Query 036160
Match_columns 601
No_of_seqs 640 out of 2946
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 10:02:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.4E-96 2E-100 776.4 66.6 599 1-601 137-735 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 8.1E-82 1.8E-86 669.1 62.7 575 13-592 48-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3E-76 6.4E-81 611.8 55.8 487 115-601 85-572 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.9E-70 1.1E-74 565.4 54.5 474 14-490 85-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 4.4E-69 9.5E-74 559.2 50.0 508 2-524 387-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.3E-67 2.8E-72 548.2 55.5 504 47-553 366-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-36 3.6E-41 331.7 57.1 551 22-583 301-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-35 2.6E-40 324.9 57.1 574 2-589 244-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-26 3.6E-31 252.2 58.8 570 3-588 46-743 (1157)
10 PRK11447 cellulose synthase su 100.0 2.7E-25 5.9E-30 242.7 54.8 562 19-592 31-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 7.5E-24 1.6E-28 220.6 54.9 543 29-589 57-709 (987)
12 PRK09782 bacteriophage N4 rece 100.0 3.5E-23 7.6E-28 215.6 51.9 564 3-591 62-745 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 7.7E-22 1.7E-26 182.7 35.4 441 122-575 53-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 2.3E-21 4.9E-26 179.6 26.3 421 155-588 51-487 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 6.2E-20 1.3E-24 188.6 39.0 417 121-586 131-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 6.5E-19 1.4E-23 172.1 41.7 577 2-589 147-801 (1018)
17 PRK11788 tetratricopeptide rep 99.9 2.7E-20 5.8E-25 182.0 26.0 289 263-594 45-355 (389)
18 PRK10049 pgaA outer membrane p 99.9 1.4E-17 3E-22 174.3 43.0 391 159-557 22-461 (765)
19 PRK15174 Vi polysaccharide exp 99.9 7.2E-18 1.6E-22 172.5 39.2 345 220-585 44-402 (656)
20 PRK10049 pgaA outer membrane p 99.9 2.7E-18 5.9E-23 179.5 36.6 399 184-590 12-460 (765)
21 KOG2002 TPR-containing nuclear 99.9 2.2E-16 4.7E-21 154.8 45.5 564 15-588 40-677 (1018)
22 PRK15174 Vi polysaccharide exp 99.9 2.2E-18 4.7E-23 176.3 33.6 354 229-591 16-386 (656)
23 KOG4422 Uncharacterized conser 99.9 1.1E-16 2.3E-21 142.5 39.1 343 16-402 116-481 (625)
24 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-17 3.9E-22 170.5 40.1 425 88-556 129-575 (615)
25 PRK11788 tetratricopeptide rep 99.8 2.5E-18 5.4E-23 168.1 31.2 291 224-551 41-346 (389)
26 PRK14574 hmsH outer membrane p 99.8 3.8E-16 8.3E-21 160.1 43.2 439 93-560 41-521 (822)
27 KOG4422 Uncharacterized conser 99.8 9.9E-17 2.1E-21 142.7 29.4 266 5-302 197-482 (625)
28 PRK14574 hmsH outer membrane p 99.8 2.4E-15 5.1E-20 154.3 42.4 317 24-347 42-395 (822)
29 KOG2003 TPR repeat-containing 99.8 5.9E-17 1.3E-21 145.1 23.7 520 19-582 165-718 (840)
30 KOG0495 HAT repeat protein [RN 99.8 1.7E-13 3.7E-18 128.8 46.3 509 71-600 366-892 (913)
31 KOG2076 RNA polymerase III tra 99.8 3E-13 6.5E-18 132.2 44.6 545 23-569 146-786 (895)
32 KOG0495 HAT repeat protein [RN 99.7 1.6E-12 3.6E-17 122.4 45.8 540 29-591 264-851 (913)
33 KOG2076 RNA polymerase III tra 99.7 6.4E-13 1.4E-17 130.0 42.3 582 1-589 155-852 (895)
34 KOG4318 Bicoid mRNA stability 99.7 1E-13 2.2E-18 134.8 33.7 561 12-592 21-814 (1088)
35 KOG4318 Bicoid mRNA stability 99.7 7.4E-14 1.6E-18 135.7 30.8 528 37-590 11-598 (1088)
36 PF13429 TPR_15: Tetratricopep 99.7 1.2E-16 2.6E-21 147.5 9.5 253 327-584 16-275 (280)
37 KOG0547 Translocase of outer m 99.7 2E-13 4.4E-18 124.1 28.9 213 366-584 338-564 (606)
38 KOG2003 TPR repeat-containing 99.7 3.9E-14 8.4E-19 127.3 23.8 258 327-588 427-691 (840)
39 PRK10747 putative protoheme IX 99.6 3.3E-12 7.1E-17 123.5 31.7 286 231-553 97-391 (398)
40 KOG1915 Cell cycle control pro 99.6 1.6E-11 3.5E-16 111.4 32.6 393 198-596 84-510 (677)
41 KOG1126 DNA-binding cell divis 99.6 7E-14 1.5E-18 132.3 18.2 278 303-590 334-624 (638)
42 KOG1915 Cell cycle control pro 99.6 8.6E-11 1.9E-15 106.8 36.8 461 85-552 72-585 (677)
43 KOG1155 Anaphase-promoting com 99.6 9.3E-12 2E-16 112.7 30.3 255 326-585 234-494 (559)
44 PRK10747 putative protoheme IX 99.6 6.2E-13 1.3E-17 128.5 24.9 275 301-585 97-389 (398)
45 KOG1126 DNA-binding cell divis 99.6 1.6E-13 3.6E-18 129.8 19.6 279 268-556 334-624 (638)
46 TIGR00540 hemY_coli hemY prote 99.6 1.3E-11 2.9E-16 120.0 31.7 290 230-551 96-398 (409)
47 PF13429 TPR_15: Tetratricopep 99.6 1.5E-14 3.4E-19 133.5 10.8 251 293-551 13-276 (280)
48 KOG1155 Anaphase-promoting com 99.5 7.8E-12 1.7E-16 113.2 25.5 321 182-516 159-491 (559)
49 COG3071 HemY Uncharacterized e 99.5 3E-11 6.6E-16 107.8 28.8 287 231-552 97-390 (400)
50 TIGR00540 hemY_coli hemY prote 99.5 1.9E-12 4.1E-17 125.9 22.9 280 298-584 94-397 (409)
51 KOG2047 mRNA splicing factor [ 99.5 8.1E-09 1.8E-13 97.9 44.0 522 52-581 103-718 (835)
52 KOG0547 Translocase of outer m 99.5 1.1E-10 2.5E-15 106.5 30.8 400 123-554 121-568 (606)
53 KOG1173 Anaphase-promoting com 99.5 3.6E-11 7.8E-16 111.9 27.7 267 287-557 243-523 (611)
54 KOG3785 Uncharacterized conser 99.5 4.9E-11 1.1E-15 104.3 26.9 448 62-562 33-499 (557)
55 TIGR02521 type_IV_pilW type IV 99.5 3.2E-12 6.8E-17 115.6 20.1 198 388-586 30-232 (234)
56 KOG4162 Predicted calmodulin-b 99.4 2.5E-09 5.4E-14 103.6 33.9 399 181-586 317-783 (799)
57 COG2956 Predicted N-acetylgluc 99.4 4.7E-10 1E-14 97.2 26.0 286 231-551 48-346 (389)
58 COG3071 HemY Uncharacterized e 99.4 4.1E-10 8.9E-15 100.7 26.4 288 130-484 97-390 (400)
59 KOG1174 Anaphase-promoting com 99.4 3E-09 6.4E-14 95.4 31.4 304 250-559 191-507 (564)
60 KOG2047 mRNA splicing factor [ 99.4 2.2E-07 4.8E-12 88.4 42.9 512 18-545 104-716 (835)
61 KOG4162 Predicted calmodulin-b 99.4 3E-08 6.6E-13 96.3 38.0 135 421-559 651-790 (799)
62 KOG1173 Anaphase-promoting com 99.4 3.7E-09 7.9E-14 98.8 29.6 277 217-533 243-532 (611)
63 COG2956 Predicted N-acetylgluc 99.3 4.3E-10 9.4E-15 97.4 21.5 287 302-594 49-355 (389)
64 COG3063 PilF Tfp pilus assembl 99.3 3.2E-11 6.9E-16 99.5 13.6 161 423-588 38-204 (250)
65 KOG1840 Kinesin light chain [C 99.3 3.7E-10 8E-15 108.6 22.3 230 355-584 200-477 (508)
66 PF13041 PPR_2: PPR repeat fam 99.3 2.3E-12 5E-17 82.7 5.1 50 14-63 1-50 (50)
67 KOG1129 TPR repeat-containing 99.3 4.4E-11 9.5E-16 103.5 14.2 226 323-588 227-460 (478)
68 PF13041 PPR_2: PPR repeat fam 99.3 3.6E-12 7.9E-17 81.8 5.8 50 115-164 1-50 (50)
69 KOG2376 Signal recognition par 99.3 8.3E-08 1.8E-12 90.5 35.6 430 127-581 22-515 (652)
70 PRK12370 invasion protein regu 99.3 7.4E-10 1.6E-14 112.1 24.5 244 334-587 276-536 (553)
71 KOG3785 Uncharacterized conser 99.3 1.1E-08 2.3E-13 90.0 27.3 450 23-494 29-497 (557)
72 KOG1129 TPR repeat-containing 99.3 1.8E-10 3.9E-15 99.8 15.9 242 291-570 226-476 (478)
73 KOG1156 N-terminal acetyltrans 99.3 8.7E-08 1.9E-12 91.3 34.7 148 63-213 19-169 (700)
74 KOG0985 Vesicle coat protein c 99.3 6E-07 1.3E-11 89.9 41.4 460 90-581 610-1244(1666)
75 PRK11189 lipoprotein NlpI; Pro 99.3 1.6E-10 3.5E-15 106.8 16.2 216 331-554 38-267 (296)
76 TIGR02521 type_IV_pilW type IV 99.2 2.6E-09 5.6E-14 96.4 22.6 197 320-554 32-234 (234)
77 KOG2376 Signal recognition par 99.2 1.3E-07 2.8E-12 89.3 32.6 436 21-479 17-515 (652)
78 PRK12370 invasion protein regu 99.2 1.2E-09 2.6E-14 110.7 20.2 210 368-585 275-501 (553)
79 KOG0985 Vesicle coat protein c 99.2 1.3E-06 2.7E-11 87.7 39.8 234 319-582 1104-1337(1666)
80 PF12569 NARP1: NMDA receptor- 99.2 9.6E-08 2.1E-12 93.4 31.6 50 533-582 466-516 (517)
81 KOG3616 Selective LIM binding 99.2 1.5E-07 3.3E-12 90.8 31.6 106 226-342 740-847 (1636)
82 KOG1156 N-terminal acetyltrans 99.2 3.4E-07 7.5E-12 87.4 33.3 130 452-584 366-509 (700)
83 PF12569 NARP1: NMDA receptor- 99.2 6.9E-07 1.5E-11 87.5 36.1 299 23-347 11-333 (517)
84 KOG3617 WD40 and TPR repeat-co 99.2 2.7E-06 5.9E-11 83.5 38.2 293 16-345 757-1106(1416)
85 KOG1840 Kinesin light chain [C 99.1 3.2E-08 7E-13 95.5 24.5 200 324-551 246-478 (508)
86 KOG1174 Anaphase-promoting com 99.1 2.3E-07 4.9E-12 83.7 27.6 391 186-590 96-504 (564)
87 KOG1127 TPR repeat-containing 99.1 5.5E-07 1.2E-11 90.2 32.1 552 18-585 494-1103(1238)
88 COG3063 PilF Tfp pilus assembl 99.1 1.7E-08 3.7E-13 83.7 17.2 190 394-585 40-235 (250)
89 PRK11189 lipoprotein NlpI; Pro 99.1 4.9E-08 1.1E-12 90.4 22.4 215 368-591 40-270 (296)
90 KOG3616 Selective LIM binding 99.1 3.8E-07 8.3E-12 88.2 28.1 304 192-545 620-930 (1636)
91 KOG1125 TPR repeat-containing 99.1 5.3E-09 1.1E-13 98.2 15.3 214 366-585 297-526 (579)
92 KOG0548 Molecular co-chaperone 99.1 2.7E-07 5.8E-12 86.3 26.1 248 323-581 228-484 (539)
93 PF04733 Coatomer_E: Coatomer 99.0 1.6E-08 3.4E-13 92.0 17.2 224 323-557 39-270 (290)
94 PF04733 Coatomer_E: Coatomer 99.0 2.9E-09 6.2E-14 96.8 11.9 245 329-588 11-267 (290)
95 KOG0624 dsRNA-activated protei 99.0 1.6E-06 3.5E-11 76.3 27.3 314 189-562 40-380 (504)
96 PRK10370 formate-dependent nit 99.0 2.6E-08 5.7E-13 85.4 16.2 149 428-590 24-177 (198)
97 TIGR03302 OM_YfiO outer membra 99.0 2.6E-08 5.5E-13 89.7 16.7 61 528-588 171-234 (235)
98 KOG3617 WD40 and TPR repeat-co 98.9 6.3E-06 1.4E-10 81.1 30.7 193 261-481 920-1171(1416)
99 KOG0548 Molecular co-chaperone 98.9 2.1E-06 4.5E-11 80.6 25.5 438 24-548 10-485 (539)
100 PRK15359 type III secretion sy 98.9 1.8E-08 3.9E-13 81.8 10.8 122 441-568 14-137 (144)
101 KOG0624 dsRNA-activated protei 98.9 1E-06 2.2E-11 77.6 21.7 291 294-590 44-374 (504)
102 PRK15359 type III secretion sy 98.9 1.7E-08 3.6E-13 81.9 10.0 109 476-589 14-124 (144)
103 KOG4340 Uncharacterized conser 98.9 8.2E-07 1.8E-11 76.6 19.9 409 156-587 14-444 (459)
104 KOG4340 Uncharacterized conser 98.9 4.2E-06 9.1E-11 72.4 23.8 312 89-416 13-337 (459)
105 cd05804 StaR_like StaR_like; a 98.8 3.2E-06 6.8E-11 81.7 26.2 257 328-587 52-337 (355)
106 KOG1914 mRNA cleavage and poly 98.8 0.00018 4E-09 67.9 34.3 174 335-509 347-528 (656)
107 COG5010 TadD Flp pilus assembl 98.8 5.8E-07 1.3E-11 76.6 15.5 155 424-581 70-226 (257)
108 PRK15179 Vi polysaccharide bio 98.8 6.6E-07 1.4E-11 91.2 19.0 129 453-584 84-215 (694)
109 KOG1070 rRNA processing protei 98.7 6.9E-07 1.5E-11 92.6 18.8 199 387-590 1456-1667(1710)
110 KOG1127 TPR repeat-containing 98.7 2.1E-05 4.6E-10 79.3 28.3 260 319-584 775-1065(1238)
111 KOG1128 Uncharacterized conser 98.7 2E-06 4.2E-11 83.7 19.9 211 360-589 404-619 (777)
112 PRK10370 formate-dependent nit 98.7 1.2E-06 2.7E-11 75.2 17.1 151 396-558 23-179 (198)
113 KOG1128 Uncharacterized conser 98.7 5.1E-07 1.1E-11 87.5 15.6 189 384-587 393-583 (777)
114 PLN02789 farnesyltranstransfer 98.7 4.5E-06 9.7E-11 77.2 21.3 182 399-584 81-300 (320)
115 PRK04841 transcriptional regul 98.7 1E-05 2.3E-10 88.7 27.7 258 328-585 461-759 (903)
116 PLN02789 farnesyltranstransfer 98.7 9.2E-07 2E-11 81.6 16.1 191 395-589 43-253 (320)
117 COG5010 TadD Flp pilus assembl 98.7 1.1E-06 2.3E-11 75.0 14.6 135 452-588 63-199 (257)
118 cd05804 StaR_like StaR_like; a 98.7 4.3E-05 9.2E-10 73.8 27.7 264 320-586 7-293 (355)
119 KOG3081 Vesicle coat complex C 98.6 2.2E-05 4.8E-10 67.1 21.6 252 296-558 16-277 (299)
120 PRK15363 pathogenicity island 98.6 1.4E-07 3E-12 74.7 8.0 97 491-587 35-133 (157)
121 PRK04841 transcriptional regul 98.6 0.00012 2.5E-09 80.6 33.6 328 227-556 383-764 (903)
122 KOG2053 Mitochondrial inherita 98.6 0.00086 1.9E-08 67.6 38.6 533 26-599 19-619 (932)
123 COG4783 Putative Zn-dependent 98.6 1.1E-05 2.3E-10 75.2 20.8 134 431-586 317-454 (484)
124 TIGR03302 OM_YfiO outer membra 98.6 3.4E-06 7.4E-11 75.9 16.9 163 388-555 32-235 (235)
125 TIGR02552 LcrH_SycD type III s 98.6 2.9E-07 6.2E-12 74.6 8.9 112 442-557 5-119 (135)
126 PF12854 PPR_1: PPR repeat 98.6 6.3E-08 1.4E-12 55.4 3.3 32 81-112 2-33 (34)
127 PF12854 PPR_1: PPR repeat 98.6 8.1E-08 1.8E-12 54.9 3.6 32 450-481 2-33 (34)
128 KOG3060 Uncharacterized conser 98.5 1.4E-05 3E-10 67.8 17.1 168 393-563 56-231 (289)
129 TIGR02552 LcrH_SycD type III s 98.5 3.8E-06 8.2E-11 68.0 12.3 103 487-589 12-117 (135)
130 COG4783 Putative Zn-dependent 98.5 3.1E-05 6.7E-10 72.3 19.1 119 464-584 315-435 (484)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.7E-06 3.6E-11 81.5 11.1 122 458-584 172-295 (395)
132 KOG1125 TPR repeat-containing 98.4 6.7E-06 1.4E-10 78.0 14.6 138 438-578 412-563 (579)
133 KOG1070 rRNA processing protei 98.4 8.5E-05 1.8E-09 77.8 22.8 220 253-473 1458-1689(1710)
134 PRK15179 Vi polysaccharide bio 98.4 4.3E-05 9.3E-10 78.3 20.6 131 419-554 85-219 (694)
135 KOG3060 Uncharacterized conser 98.4 1.8E-05 3.9E-10 67.1 14.4 163 422-588 54-222 (289)
136 PF09976 TPR_21: Tetratricopep 98.4 2.6E-05 5.6E-10 63.7 15.2 125 422-550 14-145 (145)
137 KOG3081 Vesicle coat complex C 98.3 6.1E-05 1.3E-09 64.5 16.8 152 427-588 115-273 (299)
138 KOG0553 TPR repeat-containing 98.3 2.3E-06 5E-11 74.5 8.4 91 430-525 91-184 (304)
139 PRK14720 transcript cleavage f 98.3 9.4E-05 2E-09 76.6 19.9 214 318-568 30-268 (906)
140 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.2E-06 1.1E-10 65.5 8.8 102 457-558 4-111 (119)
141 PRK14720 transcript cleavage f 98.3 0.00065 1.4E-08 70.7 25.4 31 217-247 30-60 (906)
142 PF13414 TPR_11: TPR repeat; P 98.3 8.7E-07 1.9E-11 61.7 3.3 65 522-586 2-67 (69)
143 cd00189 TPR Tetratricopeptide 98.2 5.5E-06 1.2E-10 62.4 8.0 93 494-586 3-97 (100)
144 PF13432 TPR_16: Tetratricopep 98.2 9.3E-07 2E-11 60.6 3.0 60 529-588 3-62 (65)
145 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.7E-11 50.1 4.1 35 17-51 1-35 (35)
146 KOG1914 mRNA cleavage and poly 98.2 0.0061 1.3E-07 58.1 34.0 161 420-583 366-536 (656)
147 PLN03088 SGT1, suppressor of 98.2 2.5E-06 5.3E-11 81.0 6.4 107 461-569 8-116 (356)
148 PRK15331 chaperone protein Sic 98.2 1.9E-05 4.2E-10 63.1 9.8 100 486-585 31-133 (165)
149 TIGR00756 PPR pentatricopeptid 98.2 3.4E-06 7.3E-11 49.3 4.4 35 118-152 1-35 (35)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6E-05 1.3E-09 71.2 14.7 126 392-521 172-298 (395)
151 PF09976 TPR_21: Tetratricopep 98.2 2.9E-05 6.2E-10 63.4 11.2 125 457-583 14-144 (145)
152 KOG0553 TPR repeat-containing 98.2 3.4E-06 7.3E-11 73.5 5.8 111 462-574 88-200 (304)
153 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.3E-11 49.1 3.8 33 17-49 2-34 (34)
154 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.7E-05 5.8E-10 61.4 10.6 97 493-589 4-108 (119)
155 COG4235 Cytochrome c biogenesi 98.1 2.4E-05 5.1E-10 68.9 9.8 108 488-595 153-265 (287)
156 PF13812 PPR_3: Pentatricopept 98.1 5.4E-06 1.2E-10 48.0 4.0 33 118-150 2-34 (34)
157 PF13432 TPR_16: Tetratricopep 98.1 1.1E-05 2.3E-10 55.3 6.1 61 497-557 3-65 (65)
158 PF12895 Apc3: Anaphase-promot 98.1 8.4E-07 1.8E-11 64.5 0.5 82 468-549 2-84 (84)
159 PRK10153 DNA-binding transcrip 98.1 0.00016 3.4E-09 71.8 16.1 142 415-558 332-488 (517)
160 PLN03088 SGT1, suppressor of 98.1 3.1E-05 6.6E-10 73.6 10.6 100 426-530 8-110 (356)
161 PRK02603 photosystem I assembl 98.1 2E-05 4.3E-10 66.6 8.2 48 525-572 74-121 (172)
162 COG3898 Uncharacterized membra 98.0 0.0069 1.5E-07 55.3 23.6 240 331-584 132-390 (531)
163 COG4700 Uncharacterized protei 98.0 0.00043 9.3E-09 55.9 14.3 130 452-583 86-219 (251)
164 PF12895 Apc3: Anaphase-promot 98.0 2.1E-05 4.6E-10 57.1 6.5 80 433-516 2-83 (84)
165 PF13371 TPR_9: Tetratricopept 98.0 1.2E-05 2.7E-10 56.5 4.8 60 530-589 2-61 (73)
166 PRK02603 photosystem I assembl 98.0 0.00015 3.3E-09 61.2 11.8 116 420-556 35-153 (172)
167 PF07079 DUF1347: Protein of u 98.0 0.017 3.7E-07 54.0 31.8 142 437-583 359-521 (549)
168 PF13414 TPR_11: TPR repeat; P 97.9 2E-05 4.4E-10 54.7 5.2 65 490-554 2-69 (69)
169 cd00189 TPR Tetratricopeptide 97.9 0.00012 2.6E-09 54.8 10.0 94 459-554 4-99 (100)
170 PF05843 Suf: Suppressor of fo 97.9 0.00045 9.8E-09 63.3 14.9 133 421-556 2-140 (280)
171 CHL00033 ycf3 photosystem I as 97.9 4.3E-05 9.3E-10 64.3 7.7 92 491-582 35-138 (168)
172 KOG2053 Mitochondrial inherita 97.9 0.04 8.6E-07 56.2 39.2 102 98-203 21-126 (932)
173 PF14559 TPR_19: Tetratricopep 97.9 5.2E-06 1.1E-10 57.5 1.3 55 534-588 2-56 (68)
174 PF01535 PPR: PPR repeat; Int 97.8 2E-05 4.3E-10 44.4 3.2 31 17-47 1-31 (31)
175 PRK10153 DNA-binding transcrip 97.7 0.0004 8.8E-09 69.0 12.6 135 451-589 333-485 (517)
176 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.1E-10 43.0 3.5 31 118-148 1-31 (31)
177 PF08579 RPM2: Mitochondrial r 97.7 0.0002 4.2E-09 52.8 7.6 79 20-98 29-116 (120)
178 PRK10803 tol-pal system protei 97.7 0.00016 3.4E-09 64.9 8.7 97 457-556 145-250 (263)
179 PRK15363 pathogenicity island 97.7 0.0005 1.1E-08 54.9 10.3 93 458-553 38-133 (157)
180 KOG2041 WD40 repeat protein [G 97.7 0.038 8.3E-07 54.5 24.6 60 423-482 1024-1084(1189)
181 CHL00033 ycf3 photosystem I as 97.7 0.00044 9.4E-09 58.2 10.6 98 459-556 39-153 (168)
182 PF08579 RPM2: Mitochondrial r 97.7 0.00044 9.4E-09 51.0 8.7 78 122-199 30-116 (120)
183 PF13431 TPR_17: Tetratricopep 97.7 8.4E-06 1.8E-10 46.5 -0.3 34 545-578 1-34 (34)
184 PF14559 TPR_19: Tetratricopep 97.6 1.7E-05 3.7E-10 54.9 1.0 57 467-525 3-60 (68)
185 KOG0550 Molecular chaperone (D 97.6 0.00069 1.5E-08 62.0 10.9 157 428-590 177-354 (486)
186 PF10037 MRP-S27: Mitochondria 97.6 0.0006 1.3E-08 64.9 11.0 119 82-200 62-186 (429)
187 PF04840 Vps16_C: Vps16, C-ter 97.6 0.06 1.3E-06 50.0 27.3 101 396-513 184-284 (319)
188 PF12688 TPR_5: Tetratrico pep 97.6 0.00058 1.3E-08 52.6 8.6 84 498-581 8-99 (120)
189 PF14938 SNAP: Soluble NSF att 97.6 0.0076 1.6E-07 55.6 17.4 26 322-347 38-63 (282)
190 PF10037 MRP-S27: Mitochondria 97.6 0.00084 1.8E-08 63.9 11.1 118 184-301 63-186 (429)
191 PRK10866 outer membrane biogen 97.5 0.0082 1.8E-07 53.6 16.8 56 529-584 181-239 (243)
192 COG4700 Uncharacterized protei 97.5 0.015 3.2E-07 47.4 16.1 133 418-550 87-220 (251)
193 KOG1538 Uncharacterized conser 97.5 0.02 4.3E-07 55.9 19.9 104 220-346 558-672 (1081)
194 PF07079 DUF1347: Protein of u 97.5 0.092 2E-06 49.4 38.0 203 319-529 298-531 (549)
195 PF14938 SNAP: Soluble NSF att 97.5 0.084 1.8E-06 48.7 24.1 107 422-529 157-274 (282)
196 PF13371 TPR_9: Tetratricopept 97.5 0.00018 3.9E-09 50.5 4.4 62 498-559 2-65 (73)
197 PF13428 TPR_14: Tetratricopep 97.5 0.0001 2.3E-09 45.3 2.5 42 524-565 2-43 (44)
198 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00026 5.7E-09 66.6 6.2 96 491-589 75-177 (453)
199 PRK10803 tol-pal system protei 97.4 0.0019 4E-08 58.1 11.4 87 502-588 154-248 (263)
200 PF12688 TPR_5: Tetratrico pep 97.4 0.0061 1.3E-07 47.0 12.5 91 426-516 7-100 (120)
201 COG4235 Cytochrome c biogenesi 97.4 0.008 1.7E-07 53.4 14.4 103 452-556 153-260 (287)
202 KOG2280 Vacuolar assembly/sort 97.4 0.18 3.9E-06 50.6 24.5 107 424-547 688-794 (829)
203 KOG0543 FKBP-type peptidyl-pro 97.4 0.00097 2.1E-08 61.3 8.8 94 492-585 258-354 (397)
204 KOG2280 Vacuolar assembly/sort 97.3 0.15 3.3E-06 51.1 23.6 336 44-411 425-792 (829)
205 PF06239 ECSIT: Evolutionarily 97.3 0.0012 2.5E-08 55.5 8.0 97 5-101 34-153 (228)
206 KOG1130 Predicted G-alpha GTPa 97.3 0.0012 2.7E-08 60.3 8.8 128 457-584 197-342 (639)
207 KOG1538 Uncharacterized conser 97.3 0.05 1.1E-06 53.3 19.3 269 14-348 554-846 (1081)
208 PF05843 Suf: Suppressor of fo 97.3 0.0047 1E-07 56.6 12.1 139 17-159 2-147 (280)
209 KOG2796 Uncharacterized conser 97.3 0.0074 1.6E-07 52.0 12.0 134 423-556 180-319 (366)
210 PF03704 BTAD: Bacterial trans 97.2 0.0018 3.8E-08 53.0 7.8 113 466-592 17-136 (146)
211 PF13512 TPR_18: Tetratricopep 97.2 0.005 1.1E-07 48.4 9.4 92 498-589 17-131 (142)
212 PF13525 YfiO: Outer membrane 97.2 0.0094 2E-07 51.8 12.4 149 428-578 13-199 (203)
213 PF13281 DUF4071: Domain of un 97.1 0.06 1.3E-06 50.5 17.4 160 393-555 145-337 (374)
214 PRK10866 outer membrane biogen 97.1 0.2 4.3E-06 44.8 20.7 58 326-383 39-98 (243)
215 PRK11906 transcriptional regul 97.1 0.0048 1E-07 58.5 10.0 159 421-581 252-431 (458)
216 PF13424 TPR_12: Tetratricopep 97.0 0.00033 7.1E-09 50.0 1.8 61 492-552 6-75 (78)
217 COG3898 Uncharacterized membra 97.0 0.081 1.8E-06 48.7 16.9 201 356-560 84-299 (531)
218 KOG2796 Uncharacterized conser 97.0 0.04 8.7E-07 47.7 14.1 149 435-591 164-320 (366)
219 KOG2041 WD40 repeat protein [G 97.0 0.43 9.4E-06 47.6 25.7 39 102-142 679-717 (1189)
220 PF04840 Vps16_C: Vps16, C-ter 97.0 0.31 6.7E-06 45.4 26.2 109 456-581 178-286 (319)
221 KOG0550 Molecular chaperone (D 96.9 0.074 1.6E-06 49.3 15.6 85 429-516 258-346 (486)
222 KOG0543 FKBP-type peptidyl-pro 96.8 0.003 6.5E-08 58.2 6.3 68 523-590 257-324 (397)
223 COG1729 Uncharacterized protei 96.8 0.0056 1.2E-07 53.6 7.4 99 458-557 145-249 (262)
224 COG0457 NrfG FOG: TPR repeat [ 96.8 0.38 8.3E-06 43.1 24.0 84 501-584 177-263 (291)
225 PF06239 ECSIT: Evolutionarily 96.7 0.021 4.5E-07 48.2 10.2 96 309-404 35-153 (228)
226 PF13424 TPR_12: Tetratricopep 96.7 0.0037 8.1E-08 44.4 5.2 59 525-583 7-72 (78)
227 KOG4555 TPR repeat-containing 96.7 0.0048 1E-07 46.7 5.7 85 501-585 53-143 (175)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.56 1.2E-05 44.3 26.8 132 420-555 397-534 (660)
229 PF13525 YfiO: Outer membrane 96.7 0.03 6.4E-07 48.7 11.6 130 459-588 9-172 (203)
230 PRK11906 transcriptional regul 96.7 0.068 1.5E-06 51.0 14.3 110 437-551 321-435 (458)
231 PF12921 ATP13: Mitochondrial 96.7 0.024 5.3E-07 44.2 9.7 53 450-502 47-99 (126)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0091 2E-07 56.6 8.6 59 455-516 75-137 (453)
233 PF04184 ST7: ST7 protein; In 96.7 0.28 6E-06 47.1 18.0 17 541-557 364-380 (539)
234 KOG1258 mRNA processing protei 96.7 0.77 1.7E-05 45.3 27.2 180 388-571 296-489 (577)
235 PRK15331 chaperone protein Sic 96.6 0.091 2E-06 42.5 12.6 110 460-585 42-153 (165)
236 COG4105 ComL DNA uptake lipopr 96.6 0.44 9.6E-06 41.7 17.7 156 429-586 43-233 (254)
237 PF07719 TPR_2: Tetratricopept 96.6 0.0056 1.2E-07 35.0 4.4 33 524-556 2-34 (34)
238 KOG1130 Predicted G-alpha GTPa 96.6 0.012 2.5E-07 54.2 8.2 130 422-551 197-343 (639)
239 PF09205 DUF1955: Domain of un 96.5 0.049 1.1E-06 41.6 9.9 140 431-589 13-152 (161)
240 PF00515 TPR_1: Tetratricopept 96.5 0.0053 1.1E-07 35.1 3.7 33 524-556 2-34 (34)
241 PF03704 BTAD: Bacterial trans 96.5 0.041 8.8E-07 44.9 10.4 73 422-495 64-140 (146)
242 PF13512 TPR_18: Tetratricopep 96.4 0.1 2.2E-06 41.2 11.3 115 426-557 16-133 (142)
243 COG1729 Uncharacterized protei 96.3 0.045 9.7E-07 48.2 10.2 93 422-517 144-241 (262)
244 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.1 2.3E-05 42.5 30.9 167 389-560 397-579 (660)
245 KOG3941 Intermediate in Toll s 96.1 0.038 8.2E-07 48.3 8.1 110 5-114 54-187 (406)
246 COG3118 Thioredoxin domain-con 96.0 0.37 7.9E-06 43.1 14.0 145 429-575 143-290 (304)
247 KOG2610 Uncharacterized conser 96.0 0.1 2.2E-06 47.0 10.5 112 402-516 116-234 (491)
248 COG0457 NrfG FOG: TPR repeat [ 96.0 1.1 2.4E-05 39.9 23.9 197 355-555 60-268 (291)
249 COG3118 Thioredoxin domain-con 95.8 0.35 7.5E-06 43.2 12.9 120 463-585 142-264 (304)
250 PF10300 DUF3808: Protein of u 95.7 0.31 6.7E-06 48.5 14.2 159 423-585 191-375 (468)
251 KOG1585 Protein required for f 95.7 0.9 1.9E-05 39.3 14.4 26 321-346 33-58 (308)
252 smart00299 CLH Clathrin heavy 95.6 0.43 9.2E-06 38.5 12.5 110 424-548 11-121 (140)
253 KOG2066 Vacuolar assembly/sort 95.5 3.4 7.4E-05 42.3 22.2 72 460-543 639-710 (846)
254 PRK11619 lytic murein transgly 95.5 3.7 8.1E-05 42.7 28.9 115 433-550 254-373 (644)
255 PF12921 ATP13: Mitochondrial 95.5 0.13 2.8E-06 40.2 8.6 79 15-93 1-95 (126)
256 PF13281 DUF4071: Domain of un 95.5 2.3 5E-05 40.2 20.2 164 423-587 144-335 (374)
257 PF13181 TPR_8: Tetratricopept 95.4 0.029 6.2E-07 31.9 3.6 32 524-555 2-33 (34)
258 PF02259 FAT: FAT domain; Int 95.4 1.6 3.5E-05 41.9 18.0 150 418-570 144-305 (352)
259 smart00299 CLH Clathrin heavy 95.3 0.84 1.8E-05 36.8 13.3 45 19-64 10-54 (140)
260 PF04184 ST7: ST7 protein; In 95.3 0.31 6.7E-06 46.9 11.6 56 495-550 263-322 (539)
261 COG2976 Uncharacterized protei 95.2 1.4 3.1E-05 36.8 13.8 127 422-555 56-191 (207)
262 KOG1941 Acetylcholine receptor 95.1 0.83 1.8E-05 41.9 13.3 130 423-552 125-275 (518)
263 PF00637 Clathrin: Region in C 95.1 0.01 2.2E-07 48.3 1.3 86 56-144 12-97 (143)
264 KOG4234 TPR repeat-containing 95.1 0.053 1.1E-06 44.9 5.2 101 463-565 103-210 (271)
265 KOG2114 Vacuolar assembly/sort 95.1 5 0.00011 41.5 22.6 53 394-446 710-762 (933)
266 KOG3941 Intermediate in Toll s 95.0 0.18 3.9E-06 44.3 8.6 98 106-203 54-174 (406)
267 COG4785 NlpI Lipoprotein NlpI, 95.0 0.78 1.7E-05 38.9 11.7 161 419-587 98-267 (297)
268 PF13176 TPR_7: Tetratricopept 94.9 0.043 9.2E-07 31.8 3.3 28 525-552 1-28 (36)
269 KOG1920 IkappaB kinase complex 94.8 4 8.6E-05 44.1 18.7 114 395-521 914-1029(1265)
270 KOG2610 Uncharacterized conser 94.7 0.19 4.1E-06 45.3 8.2 159 432-593 115-283 (491)
271 PF04053 Coatomer_WDAD: Coatom 94.7 1.4 2.9E-05 43.4 14.9 160 327-518 269-429 (443)
272 KOG2114 Vacuolar assembly/sort 94.7 6.4 0.00014 40.9 25.9 107 127-240 378-485 (933)
273 COG4785 NlpI Lipoprotein NlpI, 94.7 0.12 2.7E-06 43.4 6.5 90 465-557 75-167 (297)
274 PF04053 Coatomer_WDAD: Coatom 94.4 0.48 1E-05 46.4 11.0 156 397-582 269-427 (443)
275 PF07035 Mic1: Colon cancer-as 94.4 2.5 5.3E-05 34.9 15.2 56 292-347 93-148 (167)
276 KOG1920 IkappaB kinase complex 94.3 9.5 0.0002 41.4 21.5 77 395-479 971-1050(1265)
277 PF13428 TPR_14: Tetratricopep 94.3 0.1 2.2E-06 31.9 4.1 27 458-484 4-30 (44)
278 KOG4234 TPR repeat-containing 94.2 0.43 9.2E-06 39.8 8.4 93 428-524 103-202 (271)
279 PF04097 Nic96: Nup93/Nic96; 93.9 8.6 0.00019 40.0 19.5 45 121-166 115-159 (613)
280 PF09205 DUF1955: Domain of un 93.9 2.3 5.1E-05 32.9 13.3 64 422-487 88-151 (161)
281 KOG4555 TPR repeat-containing 93.9 1.1 2.3E-05 34.6 9.4 87 429-516 52-140 (175)
282 PF10300 DUF3808: Protein of u 93.9 0.39 8.4E-06 47.8 9.5 143 440-586 177-334 (468)
283 PF13170 DUF4003: Protein of u 93.8 2.1 4.5E-05 39.5 13.3 127 67-195 78-225 (297)
284 PF07035 Mic1: Colon cancer-as 93.8 2.1 4.5E-05 35.3 11.8 134 137-282 14-149 (167)
285 TIGR02561 HrpB1_HrpK type III 93.7 0.31 6.8E-06 38.6 6.6 69 504-572 23-93 (153)
286 PF09613 HrpB1_HrpK: Bacterial 93.7 1.4 3E-05 35.8 10.4 51 431-483 21-72 (160)
287 COG3629 DnrI DNA-binding trans 93.5 0.17 3.6E-06 45.4 5.6 60 492-551 154-215 (280)
288 KOG4648 Uncharacterized conser 93.5 0.072 1.6E-06 48.0 3.2 92 462-556 104-198 (536)
289 PF09613 HrpB1_HrpK: Bacterial 93.3 0.26 5.5E-06 39.8 5.8 98 492-590 8-110 (160)
290 KOG2066 Vacuolar assembly/sort 93.1 12 0.00026 38.7 18.7 45 88-132 394-438 (846)
291 COG3947 Response regulator con 93.1 5 0.00011 36.0 13.6 60 525-584 281-340 (361)
292 KOG1941 Acetylcholine receptor 93.1 1.5 3.2E-05 40.4 10.8 163 422-584 85-273 (518)
293 KOG1258 mRNA processing protei 92.9 11 0.00024 37.6 28.7 129 15-146 44-180 (577)
294 PF13174 TPR_6: Tetratricopept 92.9 0.21 4.4E-06 28.0 3.6 29 527-555 4-32 (33)
295 PRK15180 Vi polysaccharide bio 92.8 1.8 3.8E-05 41.5 11.2 131 428-562 297-430 (831)
296 KOG1308 Hsp70-interacting prot 92.8 0.036 7.9E-07 50.0 0.4 89 503-591 126-216 (377)
297 PF13170 DUF4003: Protein of u 92.7 1.2 2.6E-05 41.1 10.0 128 32-161 78-226 (297)
298 PF10602 RPN7: 26S proteasome 92.5 1.9 4E-05 36.4 10.2 96 422-517 38-139 (177)
299 PF08631 SPO22: Meiosis protei 92.4 8.9 0.00019 35.3 23.8 19 532-550 255-273 (278)
300 KOG0890 Protein kinase of the 92.3 29 0.00063 41.1 26.9 61 523-585 1670-1730(2382)
301 PF14853 Fis1_TPR_C: Fis1 C-te 92.3 0.33 7.2E-06 30.9 4.2 35 525-559 3-37 (53)
302 PF07719 TPR_2: Tetratricopept 92.1 0.065 1.4E-06 30.4 0.8 30 559-588 3-32 (34)
303 KOG3364 Membrane protein invol 92.0 3.6 7.8E-05 32.1 10.0 96 488-601 29-131 (149)
304 COG4649 Uncharacterized protei 92.0 6 0.00013 32.5 13.1 128 420-551 59-195 (221)
305 KOG1585 Protein required for f 91.9 8.2 0.00018 33.7 14.3 52 425-477 195-249 (308)
306 PF00637 Clathrin: Region in C 91.8 0.19 4.1E-06 40.8 3.6 130 20-167 11-140 (143)
307 KOG4648 Uncharacterized conser 91.6 0.58 1.3E-05 42.5 6.3 93 428-524 105-199 (536)
308 PF06552 TOM20_plant: Plant sp 91.4 0.12 2.6E-06 42.4 1.8 110 471-590 7-140 (186)
309 PF13176 TPR_7: Tetratricopept 91.4 0.54 1.2E-05 27.1 4.1 23 423-445 2-24 (36)
310 PF13174 TPR_6: Tetratricopept 91.3 0.093 2E-06 29.4 0.8 30 560-589 3-32 (33)
311 COG4649 Uncharacterized protei 91.0 6.4 0.00014 32.3 10.9 48 98-145 70-122 (221)
312 smart00028 TPR Tetratricopepti 90.9 0.46 9.9E-06 25.9 3.7 31 525-555 3-33 (34)
313 COG2976 Uncharacterized protei 90.7 3.3 7.2E-05 34.7 9.3 89 497-587 95-189 (207)
314 COG4105 ComL DNA uptake lipopr 90.5 12 0.00026 33.2 18.1 158 399-557 44-238 (254)
315 PRK09687 putative lyase; Provi 90.5 14 0.00031 33.9 25.5 61 489-554 204-265 (280)
316 KOG1464 COP9 signalosome, subu 90.5 12 0.00026 33.2 16.5 230 302-536 41-317 (440)
317 COG3629 DnrI DNA-binding trans 90.3 3.4 7.4E-05 37.4 10.0 78 422-500 155-236 (280)
318 KOG0376 Serine-threonine phosp 90.3 0.38 8.2E-06 46.0 4.2 53 531-583 46-98 (476)
319 COG4455 ImpE Protein of avirul 90.2 0.72 1.6E-05 39.1 5.2 65 494-558 4-70 (273)
320 PF10345 Cohesin_load: Cohesin 90.0 27 0.00059 36.6 30.4 52 230-281 191-253 (608)
321 PF00515 TPR_1: Tetratricopept 90.0 0.86 1.9E-05 25.6 4.2 27 422-448 3-29 (34)
322 PF13431 TPR_17: Tetratricopep 89.9 0.55 1.2E-05 26.6 3.2 20 491-510 13-32 (34)
323 PF13374 TPR_10: Tetratricopep 89.7 0.74 1.6E-05 27.4 3.9 29 524-552 3-31 (42)
324 PRK10941 hypothetical protein; 89.2 0.96 2.1E-05 40.9 5.8 62 527-588 185-246 (269)
325 PF07721 TPR_4: Tetratricopept 89.1 0.16 3.5E-06 26.7 0.5 22 560-581 4-25 (26)
326 PRK09687 putative lyase; Provi 89.0 18 0.0004 33.2 25.5 79 185-265 35-117 (280)
327 TIGR02561 HrpB1_HrpK type III 88.9 10 0.00022 30.4 10.3 46 468-518 23-71 (153)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 88.8 3.8 8.2E-05 29.8 7.2 59 438-498 25-83 (103)
329 PF06552 TOM20_plant: Plant sp 88.5 0.87 1.9E-05 37.5 4.5 91 436-527 7-117 (186)
330 PF10345 Cohesin_load: Cohesin 88.5 35 0.00077 35.7 30.0 188 16-213 30-251 (608)
331 PF02284 COX5A: Cytochrome c o 88.3 4.2 9E-05 29.9 7.3 60 438-499 28-87 (108)
332 PF10602 RPN7: 26S proteasome 87.8 3.1 6.7E-05 35.1 7.7 63 18-80 38-102 (177)
333 PF02259 FAT: FAT domain; Int 87.5 27 0.00059 33.4 16.2 64 522-585 145-212 (352)
334 KOG4507 Uncharacterized conser 87.4 1.5 3.3E-05 43.0 6.1 83 503-585 619-704 (886)
335 KOG4642 Chaperone-dependent E3 87.3 0.72 1.6E-05 39.7 3.5 85 465-552 20-107 (284)
336 PF08631 SPO22: Meiosis protei 87.2 24 0.00052 32.5 23.9 61 422-484 86-150 (278)
337 KOG4570 Uncharacterized conser 87.0 4.9 0.00011 36.4 8.5 97 384-484 59-164 (418)
338 KOG0890 Protein kinase of the 86.8 78 0.0017 37.9 33.2 109 456-568 1671-1800(2382)
339 PF11207 DUF2989: Protein of u 86.5 1.7 3.7E-05 36.7 5.2 74 502-576 118-197 (203)
340 KOG4570 Uncharacterized conser 86.5 6.1 0.00013 35.8 8.8 101 81-182 59-165 (418)
341 COG1747 Uncharacterized N-term 85.9 38 0.00082 33.4 19.9 166 392-564 69-246 (711)
342 PF04097 Nic96: Nup93/Nic96; 85.7 38 0.00082 35.4 15.7 38 92-129 117-157 (613)
343 PRK15180 Vi polysaccharide bio 85.1 9.2 0.0002 36.9 9.7 114 400-516 300-416 (831)
344 KOG3364 Membrane protein invol 84.3 3.2 7E-05 32.3 5.3 71 520-590 29-104 (149)
345 PRK11619 lytic murein transgly 84.0 60 0.0013 34.1 34.9 114 332-447 254-373 (644)
346 PF14561 TPR_20: Tetratricopep 83.9 1.1 2.5E-05 32.5 2.8 64 520-583 18-85 (90)
347 PF13181 TPR_8: Tetratricopept 83.9 0.74 1.6E-05 25.9 1.5 28 559-586 3-30 (34)
348 KOG1586 Protein required for f 83.5 30 0.00065 30.3 15.5 58 499-556 162-228 (288)
349 cd00923 Cyt_c_Oxidase_Va Cytoc 83.3 7.1 0.00015 28.4 6.3 47 134-180 24-70 (103)
350 KOG1550 Extracellular protein 83.3 59 0.0013 33.6 22.4 214 334-585 308-537 (552)
351 PF07721 TPR_4: Tetratricopept 83.2 2.4 5.2E-05 22.1 3.2 18 497-514 7-24 (26)
352 TIGR03504 FimV_Cterm FimV C-te 83.0 1.6 3.4E-05 26.5 2.7 25 562-586 4-28 (44)
353 PF13374 TPR_10: Tetratricopep 82.7 3.6 7.8E-05 24.3 4.4 26 422-447 4-29 (42)
354 COG0790 FOG: TPR repeat, SEL1 82.7 41 0.00088 31.2 14.2 17 572-588 252-268 (292)
355 TIGR02508 type_III_yscG type I 82.7 14 0.00031 27.1 7.6 87 66-156 20-106 (115)
356 KOG0276 Vesicle coat complex C 82.4 28 0.00061 35.0 12.0 92 402-516 599-691 (794)
357 PRK12798 chemotaxis protein; R 82.2 50 0.0011 31.9 21.3 180 402-584 125-322 (421)
358 KOG3807 Predicted membrane pro 81.7 7.9 0.00017 35.3 7.6 54 426-481 281-337 (556)
359 COG4455 ImpE Protein of avirul 81.6 4.9 0.00011 34.4 5.9 74 457-532 3-81 (273)
360 PRK10941 hypothetical protein; 81.5 6.4 0.00014 35.7 7.2 64 496-559 186-251 (269)
361 PF02284 COX5A: Cytochrome c o 81.4 7.8 0.00017 28.6 6.0 47 135-181 28-74 (108)
362 KOG4507 Uncharacterized conser 80.9 3.7 8.1E-05 40.5 5.7 101 465-568 617-721 (886)
363 COG4976 Predicted methyltransf 80.5 2.3 4.9E-05 36.6 3.6 59 500-558 4-64 (287)
364 PF10579 Rapsyn_N: Rapsyn N-te 79.6 4.6 0.0001 28.1 4.2 47 467-513 18-65 (80)
365 PF13762 MNE1: Mitochondrial s 79.3 22 0.00048 28.5 8.6 51 115-165 77-128 (145)
366 PF09670 Cas_Cas02710: CRISPR- 78.8 42 0.00092 32.5 12.2 55 429-484 140-198 (379)
367 KOG1550 Extracellular protein 78.6 37 0.00081 35.0 12.5 149 432-589 261-429 (552)
368 KOG2063 Vacuolar assembly/sort 78.5 1E+02 0.0023 33.3 15.9 245 1-300 494-744 (877)
369 PF11207 DUF2989: Protein of u 78.4 21 0.00046 30.4 8.6 77 128-206 118-197 (203)
370 KOG0551 Hsp90 co-chaperone CNS 77.6 8.4 0.00018 35.3 6.5 90 493-582 83-178 (390)
371 PF10579 Rapsyn_N: Rapsyn N-te 77.3 7.4 0.00016 27.1 4.7 46 432-477 18-65 (80)
372 COG4976 Predicted methyltransf 77.3 3.8 8.2E-05 35.3 4.0 53 466-521 6-60 (287)
373 KOG1586 Protein required for f 77.1 50 0.0011 28.9 13.8 60 529-588 160-226 (288)
374 KOG1464 COP9 signalosome, subu 76.8 43 0.00093 29.9 10.2 117 470-586 42-174 (440)
375 PF14561 TPR_20: Tetratricopep 76.6 9.2 0.0002 27.8 5.5 50 489-538 20-73 (90)
376 KOG0545 Aryl-hydrocarbon recep 75.3 23 0.00051 31.1 8.2 67 493-559 232-300 (329)
377 PF07720 TPR_3: Tetratricopept 75.0 11 0.00024 21.7 4.3 29 527-555 5-35 (36)
378 PRK13800 putative oxidoreducta 74.4 1.5E+02 0.0032 33.0 22.4 257 104-382 622-880 (897)
379 KOG2758 Translation initiation 74.3 73 0.0016 29.4 13.8 168 376-554 22-198 (432)
380 COG3947 Response regulator con 73.3 16 0.00035 32.9 7.0 58 494-551 282-341 (361)
381 TIGR03504 FimV_Cterm FimV C-te 73.1 9.7 0.00021 23.2 4.0 25 325-349 5-29 (44)
382 KOG0376 Serine-threonine phosp 72.5 5.1 0.00011 38.7 4.1 105 427-536 11-118 (476)
383 COG5159 RPN6 26S proteasome re 71.7 79 0.0017 28.7 13.6 47 326-372 10-63 (421)
384 COG2912 Uncharacterized conser 71.6 17 0.00036 32.6 6.8 62 527-588 185-246 (269)
385 TIGR02508 type_III_yscG type I 71.3 39 0.00084 25.0 9.2 58 398-458 48-105 (115)
386 PF12862 Apc5: Anaphase-promot 71.1 7.4 0.00016 28.6 4.0 51 534-584 9-68 (94)
387 PF07163 Pex26: Pex26 protein; 71.0 44 0.00096 30.1 9.0 88 326-413 90-182 (309)
388 KOG3824 Huntingtin interacting 70.9 6.7 0.00014 35.4 4.2 61 502-562 127-189 (472)
389 PRK13800 putative oxidoreducta 70.0 1.9E+02 0.004 32.3 25.1 61 489-550 787-847 (897)
390 smart00386 HAT HAT (Half-A-TPR 69.5 3.1 6.8E-05 22.8 1.4 28 537-564 1-28 (33)
391 KOG2471 TPR repeat-containing 69.4 70 0.0015 31.5 10.6 67 525-594 208-274 (696)
392 PHA02875 ankyrin repeat protei 69.1 1.2E+02 0.0027 29.8 17.7 207 26-253 9-230 (413)
393 KOG2396 HAT (Half-A-TPR) repea 68.3 1.3E+02 0.0028 29.9 31.0 79 34-114 89-168 (568)
394 PF11846 DUF3366: Domain of un 68.2 25 0.00054 30.2 7.2 25 489-513 142-166 (193)
395 COG2909 MalT ATP-dependent tra 67.9 1.8E+02 0.0039 31.3 21.9 215 365-582 426-684 (894)
396 PF04190 DUF410: Protein of un 67.9 97 0.0021 28.2 14.2 62 491-552 90-170 (260)
397 PF07163 Pex26: Pex26 protein; 67.6 66 0.0014 29.1 9.4 83 396-478 90-181 (309)
398 COG1747 Uncharacterized N-term 67.2 1.4E+02 0.003 29.8 21.9 157 353-516 65-230 (711)
399 KOG4077 Cytochrome c oxidase, 66.4 48 0.001 25.7 7.2 69 439-518 68-136 (149)
400 KOG0276 Vesicle coat complex C 65.6 91 0.002 31.7 10.8 104 397-518 645-748 (794)
401 PF09986 DUF2225: Uncharacteri 65.4 12 0.00025 32.8 4.6 27 559-585 167-193 (214)
402 PF14853 Fis1_TPR_C: Fis1 C-te 64.0 25 0.00054 22.5 4.7 32 426-459 7-38 (53)
403 PF10366 Vps39_1: Vacuolar sor 63.3 64 0.0014 24.5 8.5 27 422-448 41-67 (108)
404 PF11846 DUF3366: Domain of un 63.2 29 0.00063 29.8 6.7 38 517-554 138-175 (193)
405 KOG2581 26S proteasome regulat 62.9 1.5E+02 0.0032 28.6 14.4 123 432-555 138-279 (493)
406 PF04910 Tcf25: Transcriptiona 62.6 1.5E+02 0.0033 28.6 16.3 76 498-573 110-194 (360)
407 PHA02875 ankyrin repeat protei 62.4 1.7E+02 0.0036 28.9 17.2 108 239-354 116-230 (413)
408 PF11848 DUF3368: Domain of un 62.1 20 0.00044 22.2 4.0 33 27-59 13-45 (48)
409 KOG0403 Neoplastic transformat 61.3 1.7E+02 0.0036 28.6 17.8 333 90-451 218-574 (645)
410 cd00280 TRFH Telomeric Repeat 61.2 1E+02 0.0022 26.0 9.3 30 529-559 117-146 (200)
411 cd08819 CARD_MDA5_2 Caspase ac 60.2 57 0.0012 23.4 6.3 38 401-439 48-85 (88)
412 PF00244 14-3-3: 14-3-3 protei 59.9 1.3E+02 0.0028 26.9 10.5 58 426-483 7-65 (236)
413 KOG1308 Hsp70-interacting prot 59.7 5.5 0.00012 36.6 1.6 81 432-516 126-207 (377)
414 KOG4279 Serine/threonine prote 59.5 1.1E+02 0.0023 32.1 10.3 161 391-554 203-397 (1226)
415 PF04910 Tcf25: Transcriptiona 59.5 1.7E+02 0.0037 28.2 17.3 55 462-517 110-165 (360)
416 PF15469 Sec5: Exocyst complex 59.5 1E+02 0.0023 26.1 9.3 25 460-484 91-115 (182)
417 KOG0991 Replication factor C, 59.1 1.3E+02 0.0028 26.6 11.2 46 410-456 229-274 (333)
418 PF13762 MNE1: Mitochondrial s 59.1 95 0.0021 25.1 9.2 51 217-267 78-129 (145)
419 PF11848 DUF3368: Domain of un 58.8 38 0.00083 21.0 4.8 33 128-160 13-45 (48)
420 cd08819 CARD_MDA5_2 Caspase ac 58.7 66 0.0014 23.1 6.4 38 300-338 48-85 (88)
421 COG5159 RPN6 26S proteasome re 58.7 1.5E+02 0.0031 27.1 16.2 32 225-256 10-41 (421)
422 PF12968 DUF3856: Domain of Un 58.0 23 0.00049 27.1 4.2 19 493-511 57-75 (144)
423 PF11663 Toxin_YhaV: Toxin wit 58.0 11 0.00025 29.4 2.8 21 65-85 109-129 (140)
424 PF11768 DUF3312: Protein of u 57.8 1.8E+02 0.0039 29.4 11.3 24 393-416 412-435 (545)
425 COG2909 MalT ATP-dependent tra 57.4 2.8E+02 0.0061 30.0 25.3 56 460-516 623-684 (894)
426 KOG2396 HAT (Half-A-TPR) repea 57.3 2.1E+02 0.0046 28.5 33.7 236 340-584 303-557 (568)
427 COG5191 Uncharacterized conser 57.2 12 0.00026 34.0 3.2 73 490-562 106-181 (435)
428 KOG4814 Uncharacterized conser 57.0 26 0.00057 35.5 5.7 58 494-551 397-456 (872)
429 KOG4642 Chaperone-dependent E3 56.7 1.4E+02 0.0031 26.4 10.2 81 399-481 20-104 (284)
430 PF08311 Mad3_BUB1_I: Mad3/BUB 55.9 98 0.0021 24.3 8.8 42 438-479 81-123 (126)
431 KOG4077 Cytochrome c oxidase, 55.7 27 0.00059 27.0 4.4 43 516-558 77-119 (149)
432 KOG0545 Aryl-hydrocarbon recep 54.9 1.6E+02 0.0034 26.3 10.5 62 459-522 234-296 (329)
433 COG0735 Fur Fe2+/Zn2+ uptake r 54.8 62 0.0013 26.2 6.8 64 37-101 7-70 (145)
434 PF14689 SPOB_a: Sensor_kinase 54.5 32 0.0007 22.8 4.2 26 458-483 26-51 (62)
435 PF10366 Vps39_1: Vacuolar sor 54.3 73 0.0016 24.2 6.7 27 119-145 41-67 (108)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 54.1 1.1E+02 0.0023 24.1 8.3 43 473-516 81-124 (126)
437 KOG2908 26S proteasome regulat 53.2 1.2E+02 0.0027 28.3 8.8 57 460-516 80-140 (380)
438 COG5191 Uncharacterized conser 52.9 63 0.0014 29.7 6.8 69 519-587 103-172 (435)
439 KOG2297 Predicted translation 51.7 2E+02 0.0043 26.6 10.9 199 237-483 186-399 (412)
440 KOG4567 GTPase-activating prot 51.7 1.5E+02 0.0033 27.3 9.0 44 137-180 263-306 (370)
441 KOG3824 Huntingtin interacting 51.5 13 0.00029 33.6 2.6 51 533-583 126-176 (472)
442 PF14863 Alkyl_sulf_dimr: Alky 51.2 21 0.00045 28.6 3.4 65 508-575 58-122 (141)
443 PF14689 SPOB_a: Sensor_kinase 50.9 35 0.00076 22.6 4.0 43 472-517 7-49 (62)
444 PF09477 Type_III_YscG: Bacter 50.9 1.1E+02 0.0023 23.2 8.6 81 64-147 19-99 (116)
445 PF06957 COPI_C: Coatomer (COP 50.0 59 0.0013 31.7 6.8 42 514-555 289-332 (422)
446 KOG2659 LisH motif-containing 49.6 1.5E+02 0.0033 26.0 8.5 20 427-446 71-90 (228)
447 PF07575 Nucleopor_Nup85: Nup8 49.5 1.5E+02 0.0033 30.8 10.3 25 232-256 509-533 (566)
448 PF00244 14-3-3: 14-3-3 protei 49.1 2E+02 0.0043 25.8 10.0 57 325-381 7-64 (236)
449 PRK10564 maltose regulon perip 48.8 40 0.00087 30.9 5.1 40 321-360 259-298 (303)
450 KOG2659 LisH motif-containing 48.7 1.9E+02 0.0041 25.4 9.2 93 421-516 27-128 (228)
451 COG0735 Fur Fe2+/Zn2+ uptake r 48.7 1.1E+02 0.0023 24.9 7.2 62 341-403 8-69 (145)
452 KOG4567 GTPase-activating prot 48.5 2.3E+02 0.0049 26.3 10.0 80 339-423 263-352 (370)
453 PF04034 DUF367: Domain of unk 48.4 1.3E+02 0.0028 23.5 7.3 59 491-549 66-125 (127)
454 KOG4279 Serine/threonine prote 48.4 1.3E+02 0.0027 31.6 8.8 101 419-524 200-321 (1226)
455 KOG2581 26S proteasome regulat 48.3 79 0.0017 30.3 7.0 137 452-589 121-279 (493)
456 PF02184 HAT: HAT (Half-A-TPR) 48.3 15 0.00034 20.4 1.6 25 538-563 2-26 (32)
457 PF12968 DUF3856: Domain of Un 48.1 1.3E+02 0.0028 23.3 9.8 20 458-477 58-77 (144)
458 PF14669 Asp_Glu_race_2: Putat 47.7 1.8E+02 0.0038 24.8 11.7 159 145-313 1-206 (233)
459 PF07575 Nucleopor_Nup85: Nup8 46.7 3.6E+02 0.0078 28.1 17.1 27 18-44 150-176 (566)
460 PF11663 Toxin_YhaV: Toxin wit 46.4 26 0.00056 27.5 3.1 32 431-464 106-137 (140)
461 PHA02537 M terminase endonucle 46.2 1.4E+02 0.0031 26.4 7.9 33 523-555 169-210 (230)
462 KOG1498 26S proteasome regulat 45.9 2.8E+02 0.0062 26.7 13.5 104 495-598 135-253 (439)
463 KOG2168 Cullins [Cell cycle co 45.8 4.2E+02 0.0091 28.6 18.1 24 122-145 330-353 (835)
464 PRK10564 maltose regulon perip 45.3 38 0.00081 31.0 4.4 36 120-155 260-295 (303)
465 KOG2300 Uncharacterized conser 44.9 3.3E+02 0.0072 27.2 30.8 151 430-582 333-510 (629)
466 KOG2062 26S proteasome regulat 44.9 4.1E+02 0.0088 28.2 29.7 120 430-554 511-636 (929)
467 PF10255 Paf67: RNA polymerase 44.9 1.3E+02 0.0029 29.3 8.3 96 419-518 74-191 (404)
468 COG4941 Predicted RNA polymera 44.0 2.8E+02 0.0061 26.1 11.6 127 417-556 261-398 (415)
469 cd00280 TRFH Telomeric Repeat 43.9 1.5E+02 0.0033 25.0 7.2 18 499-516 119-136 (200)
470 COG5108 RPO41 Mitochondrial DN 43.0 3.1E+02 0.0068 28.5 10.5 86 394-482 33-130 (1117)
471 KOG2422 Uncharacterized conser 42.6 3.9E+02 0.0085 27.3 18.8 89 463-554 350-450 (665)
472 PRK12798 chemotaxis protein; R 42.2 3.4E+02 0.0074 26.5 17.3 188 394-586 86-286 (421)
473 PF03745 DUF309: Domain of unk 41.8 60 0.0013 21.6 4.0 48 26-73 9-61 (62)
474 PRK09462 fur ferric uptake reg 41.8 1.3E+02 0.0027 24.5 6.8 62 40-102 6-68 (148)
475 PRK13342 recombination factor 40.9 3.7E+02 0.008 26.6 16.2 167 132-313 152-330 (413)
476 PRK11639 zinc uptake transcrip 40.4 1.3E+02 0.0028 25.1 6.8 63 40-103 15-77 (169)
477 PRK09462 fur ferric uptake reg 40.0 2E+02 0.0043 23.3 7.7 62 141-203 6-68 (148)
478 PF15469 Sec5: Exocyst complex 40.0 1.2E+02 0.0026 25.7 6.6 115 458-598 60-180 (182)
479 COG2912 Uncharacterized conser 39.3 89 0.0019 28.3 5.8 62 498-559 188-251 (269)
480 PF11817 Foie-gras_1: Foie gra 39.0 1.1E+02 0.0023 27.7 6.5 19 463-481 186-204 (247)
481 PF08424 NRDE-2: NRDE-2, neces 38.9 3.4E+02 0.0075 25.6 17.8 145 436-592 47-215 (321)
482 KOG2034 Vacuolar sorting prote 38.7 5.5E+02 0.012 27.9 26.7 132 257-404 508-643 (911)
483 KOG0292 Vesicle coat complex C 38.1 53 0.0011 34.9 4.7 123 433-587 606-728 (1202)
484 PF10516 SHNi-TPR: SHNi-TPR; 37.5 80 0.0017 18.5 3.5 28 525-552 3-30 (38)
485 TIGR02270 conserved hypothetic 36.1 4.4E+02 0.0095 26.0 23.2 44 85-128 99-142 (410)
486 PF11817 Foie-gras_1: Foie gra 36.0 1.2E+02 0.0026 27.4 6.3 56 494-549 181-244 (247)
487 cd07153 Fur_like Ferric uptake 35.9 76 0.0016 24.3 4.5 44 22-65 6-49 (116)
488 KOG4521 Nuclear pore complex, 35.5 7.1E+02 0.015 28.3 13.5 24 425-448 988-1011(1480)
489 KOG0991 Replication factor C, 35.3 3.2E+02 0.007 24.3 13.3 124 394-522 135-272 (333)
490 PHA03100 ankyrin repeat protei 35.3 4.8E+02 0.01 26.3 13.8 14 98-111 117-130 (480)
491 PF04190 DUF410: Protein of un 35.1 3.5E+02 0.0076 24.6 18.9 140 329-484 20-170 (260)
492 KOG0889 Histone acetyltransfer 35.0 1.2E+03 0.025 30.6 23.1 28 320-347 2633-2660(3550)
493 PF10255 Paf67: RNA polymerase 34.8 2.5E+02 0.0055 27.4 8.4 58 424-481 126-190 (404)
494 TIGR02710 CRISPR-associated pr 34.1 4.1E+02 0.0089 25.8 9.6 125 460-585 135-274 (380)
495 KOG0687 26S proteasome regulat 33.5 4.1E+02 0.0089 25.0 10.6 24 493-516 106-129 (393)
496 PF09454 Vps23_core: Vps23 cor 33.4 1.1E+02 0.0023 20.7 4.1 47 419-466 7-53 (65)
497 KOG3677 RNA polymerase I-assoc 33.4 1.3E+02 0.0028 29.1 6.0 19 497-515 278-296 (525)
498 KOG1114 Tripeptidyl peptidase 33.1 7E+02 0.015 27.5 15.1 79 437-516 1213-1291(1304)
499 COG5108 RPO41 Mitochondrial DN 32.8 2.1E+02 0.0046 29.6 7.6 74 425-502 33-114 (1117)
500 PRK11639 zinc uptake transcrip 32.7 1.7E+02 0.0038 24.4 6.3 60 446-507 17-76 (169)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-96 Score=776.41 Aligned_cols=599 Identities=35% Similarity=0.656 Sum_probs=591.2
Q ss_pred CchHHHHhccCCCCCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHh
Q 036160 1 MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRL 80 (601)
Q Consensus 1 ~~~a~~~f~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 80 (601)
++.|.++|+.|++||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.
T Consensus 137 ~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred hHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036160 81 GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR 160 (601)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 160 (601)
|+.||..++|+|+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHH
Q 036160 161 ATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240 (601)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 240 (601)
+|++.|+++.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||.+|.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcc
Q 036160 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320 (601)
Q Consensus 241 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (601)
|++|...|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|+.
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036160 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400 (601)
Q Consensus 321 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (601)
+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 6999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHH
Q 036160 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480 (601)
Q Consensus 401 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 480 (601)
++|++++|.++|+.+ .+|..+||++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 536 k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcce
Q 036160 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 481 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
|.+.+|+.|+..+|++++++|++.|++++|.+++++|+++||..+|+.|+.+|..+|+.+.++.+.+++++++|+++..|
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 99777999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhhhhhcCChhhHHHHHHHHHhcCCcCCCceeEEEecC
Q 036160 561 VFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601 (601)
Q Consensus 561 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (601)
..++++|...|+|++|.++++.|++.|++|+||++|++|+|
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999999999987
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-82 Score=669.14 Aligned_cols=575 Identities=24% Similarity=0.406 Sum_probs=560.9
Q ss_pred CCCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhH
Q 036160 13 ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL 92 (601)
Q Consensus 13 ~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (601)
.|+..++|.++.++++.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+..+.+..++..+.+.+..++..++|++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhh
Q 036160 93 VDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172 (601)
Q Consensus 93 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 172 (601)
+..|++.|+++.|.++|++|.+||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCC
Q 036160 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252 (601)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 252 (601)
+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|+.+|..+||++|.+|++.|++++|+++|++|...|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhc
Q 036160 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332 (601)
Q Consensus 253 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 332 (601)
..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|..+|+.+|+.+|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036160 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412 (601)
Q Consensus 333 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 412 (601)
|++++|+++|++|...|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh
Q 036160 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492 (601)
Q Consensus 413 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 492 (601)
++|..+|..+|++++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~ 525 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGF 525 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccce
Confidence 999999999999999999999999999999999986 59999999999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCcceeehhhhhhhc
Q 036160 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL--EPKMESNYVFPSDISATQ 570 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 570 (601)
++++|+++|+++|++++|.++|+++ .||..+|+.++.+|.++|+.++|.++++++.+. .| |..+|..+..+|.+.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~ 602 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRS 602 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhc
Confidence 9999999999999999999999998 799999999999999999999999999999984 56 788899999999999
Q ss_pred CChhhHHHHHHHHH-hcCCcCCC
Q 036160 571 GRWNDFSGVRALLS-SQGIKKEP 592 (601)
Q Consensus 571 g~~~~A~~~~~~~~-~~~~~~~~ 592 (601)
|++++|.++|+.|. +.|+.|+.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999998 67887764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-76 Score=611.76 Aligned_cols=487 Identities=32% Similarity=0.546 Sum_probs=479.3
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHH
Q 036160 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193 (601)
Q Consensus 115 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 193 (601)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999998864 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHH
Q 036160 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273 (601)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 273 (601)
+.+|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036160 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353 (601)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 353 (601)
+++..+.+.|+.++..+++.|+++|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|...|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhC
Q 036160 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433 (601)
Q Consensus 354 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 433 (601)
..||+.++.+|++.|.++.|.+++..|.+.|+.|+..+|++|+++|+++|++++|.++|++|..+|..+||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036160 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513 (601)
Q Consensus 434 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 513 (601)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998779999999999999999999999999999
Q ss_pred hHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCCCc
Q 036160 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593 (601)
Q Consensus 514 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 593 (601)
++++++.|+..+|+.++.+|..+|+++.|+.++++++++.|++...|..++.+|.+.|+|++|.++++.|++.|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecC
Q 036160 594 CSWIEVDG 601 (601)
Q Consensus 594 ~~~~~~~~ 601 (601)
++|++++|
T Consensus 565 ~s~i~~~~ 572 (697)
T PLN03081 565 CTWIEVKK 572 (697)
T ss_pred eeEEEECC
Confidence 99999975
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.9e-70 Score=565.37 Aligned_cols=474 Identities=22% Similarity=0.372 Sum_probs=459.9
Q ss_pred CCcccHHHHHHHHhhCCChhhHHHHHHhhhhcC-CCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhH
Q 036160 14 LNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL 92 (601)
Q Consensus 14 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (601)
++..+|+.+|..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456699999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhh
Q 036160 93 VDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172 (601)
Q Consensus 93 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 172 (601)
+..|++.|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCC
Q 036160 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252 (601)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 252 (601)
+++..+.+.|+.||..++++|+.+|+++|++++|.++|+.|..+|+.+||.+|.+|++.|++++|+++|++|...|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhc
Q 036160 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332 (601)
Q Consensus 253 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 332 (601)
..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+++|++.|++++|.++|++|.++|+.+||++|.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036160 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK-TGHLLDMFVSTALVAMYAKCGSIDDAEAV 411 (601)
Q Consensus 333 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 411 (601)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HcCCC-CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 036160 412 FKGSA-LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489 (601)
Q Consensus 412 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 489 (601)
++++. .|+..+|++|+.+|..+|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|++. |+..
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99987 78999999999999999999999999999975 5665 569999999999999999999999999988 8754
Q ss_pred C
Q 036160 490 T 490 (601)
Q Consensus 490 ~ 490 (601)
.
T Consensus 562 ~ 562 (697)
T PLN03081 562 H 562 (697)
T ss_pred C
Confidence 3
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.4e-69 Score=559.21 Aligned_cols=508 Identities=16% Similarity=0.209 Sum_probs=435.2
Q ss_pred chHHHHhccCCCCCc-----ccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHH
Q 036160 2 ELAKRVFKSMPELNV-----VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAM 76 (601)
Q Consensus 2 ~~a~~~f~~~~~~~~-----~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 76 (601)
++|.++|+.|+.++. ..++.++..|.+.|.+++|+++|+.|.. ||..+|+.++.+|++.|+++.|.++|+.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 578899999876544 3566777788999999999999988875 8889999999999999999999999999
Q ss_pred HHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCC----CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036160 77 AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD----PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152 (601)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 152 (601)
|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999883 88999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccCCcchhhHHHHHHHH--HCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC----CCcccHHHHHH
Q 036160 153 FVLTSLVRATTETGDQRCGESIHAVICK--YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH----QDSVSWNALFS 226 (601)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~ 226 (601)
.||+.+|.+|++.|+++.|.+++++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+ ++..+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999976 57889999999999999999999999999998875 56688999999
Q ss_pred HHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHH
Q 036160 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306 (601)
Q Consensus 227 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 306 (601)
+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 036160 307 AGVAFDSLA----NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382 (601)
Q Consensus 307 a~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 382 (601)
|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999884 5788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 036160 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462 (601)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 462 (601)
.|+.||..+|++++.++.+ ++++|.++.+.+. .|+. .......+..+.|+.+|++|.+.|+.||..||+.++
T Consensus 783 ~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~-----~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 783 DGIKPNLVMCRCITGLCLR--RFEKACALGEPVV-----SFDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhh-----hhhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 9999999999998865432 3555544433222 1110 011112234567999999999999999999999999
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc---CCCCcHH
Q 036160 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET---KLTPNAL 524 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~ 524 (601)
.+++..+..+.+..+++.|... +..|+..+|+++++++.+. .++|..++++| ++.|+..
T Consensus 855 ~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 855 GCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888999999999999888766 7788899999999988432 46899999984 5677653
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-67 Score=548.21 Aligned_cols=504 Identities=15% Similarity=0.191 Sum_probs=468.3
Q ss_pred CCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcC-CCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHH
Q 036160 47 KKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125 (601)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 125 (601)
..++...|..++..|++.|++++|.++|+.|.+.|+ +++..+++.++.+|.+.|..++|..+|+.|..||..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778899999999999999999999999999985 5678888899999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccH
Q 036160 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205 (601)
Q Consensus 126 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (601)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC----CCcccHHHHHHHHhcCCCchhHHHHHHHHHH--CCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHH
Q 036160 206 GSRVFEAIAH----QDSVSWNALFSRFQDYESPDQGLRIFYQMLL--KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279 (601)
Q Consensus 206 a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 279 (601)
|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|+++.|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999954 8899999999999999999999999999986 579999999999999999999999999999999
Q ss_pred HHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036160 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN----KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355 (601)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 355 (601)
.+.++.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999974 688999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC----CCCHhHHHHHHHHHH
Q 036160 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA----LRDTASWNMMIGGYV 431 (601)
Q Consensus 356 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~ 431 (601)
+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765 789999999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc----c-------------------CcHHHHHHHHHHHHHHhCCC
Q 036160 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH----M-------------------GLIEEGKKHFSSIKKIYGIT 488 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~ 488 (601)
+.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|++. |+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCC
Confidence 999999999999999999999999999999865432 1 1236799999999988 999
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHhHhcC---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 489 PTIKHFACMIDILGRAGKFTEIENFITETK---LTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 489 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
||..+|+.++.++.+.+..+.+..+++.++ ..|+..+|+.++.++.+. .++|..+++++.+..
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999998889999999999998876 455788999999988432 368999999999853
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-36 Score=331.66 Aligned_cols=551 Identities=11% Similarity=0.030 Sum_probs=252.2
Q ss_pred HHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC
Q 036160 22 LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101 (601)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (601)
+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|+
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 3444455555555555555555432 2233344445555555555555555555554432 2234445555555555555
Q ss_pred hhHHHHHHhcCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHH
Q 036160 102 ADNALKVFYRIKD--P-DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178 (601)
Q Consensus 102 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 178 (601)
+++|.+.|+++.+ | +...|..+...+...|++++|.+.++.+.+... ........++..+.+.|+++.|..+++.+
T Consensus 379 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5555555555443 1 223344444444555555555555555444321 11222333344444445555555555444
Q ss_pred HHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC---CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhh
Q 036160 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255 (601)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 255 (601)
.... +++..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++...+ +.+..+
T Consensus 458 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 535 (899)
T TIGR02917 458 EKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRA 535 (899)
T ss_pred HHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHH
Confidence 4332 33344444444555555555555555544432 122233344444444445555555444444332 223334
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHccC---------------------------------CCCcchhhHHHHHHHhcC
Q 036160 256 FIVILKACSSLSDVGFGKQLHAHTIKHSL---------------------------------DGNHVVGTSLVDMYDKSG 302 (601)
Q Consensus 256 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~ 302 (601)
+..+...+...|+.+.+...++.+.+.+. +.+...+..+...+...|
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 44444444444444444444444443321 223334444444444455
Q ss_pred CHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHH
Q 036160 303 CLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379 (601)
Q Consensus 303 ~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 379 (601)
++++|...|+.+.+ .++..+..+...+...|++++|...++++.... +.+..++..+...+...|+++.|..+++.
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555544444332 123334444444444555555555554444321 22234444444444445555555555544
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhh
Q 036160 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457 (601)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 457 (601)
+.+.. +.+...+..+...+...|++++|.+.|+.+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+...
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 44433 2233344444444455555555555444332 2222344444444555555555555555544431 223334
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHh
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSW 535 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~ 535 (601)
+..+...|...|++++|.+.|+++.+. .+++...+..++..+...|+ ++|+.++++ +...| ++..+..++..+..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 444444455555555555555555443 12234444445555555555 445555544 22233 33444444445555
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHH
Q 036160 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583 (601)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 583 (601)
.|++++|...++++++..|.++.++..++.++...|++++|.+++++|
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-35 Score=324.87 Aligned_cols=574 Identities=12% Similarity=0.025 Sum_probs=429.1
Q ss_pred chHHHHhccCCC--C-CcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCC-cchHHHHHHHHhccCchhhhHHHHHHH
Q 036160 2 ELAKRVFKSMPE--L-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLKGFANSGYIKAGQVVHAMA 77 (601)
Q Consensus 2 ~~a~~~f~~~~~--~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 77 (601)
++|...|+.+.. | +...+......+...|++++|.+.|+++.+.+ |+ ...+..+...+...|+++.|...++.+
T Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 321 (899)
T TIGR02917 244 EEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQI 321 (899)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467777766642 2 33344445556678999999999999998764 33 334556667788999999999999999
Q ss_pred HHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 036160 78 IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154 (601)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 154 (601)
.+.. +.+...+..+...+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|.+.|+++.+.. +.+...
T Consensus 322 ~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 399 (899)
T TIGR02917 322 LKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAA 399 (899)
T ss_pred HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 8865 34667788888999999999999999998875 355678888999999999999999999998753 335667
Q ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC---CCcccHHHHHHHHhcC
Q 036160 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDY 231 (601)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 231 (601)
+..+...+...|+++.|.+.++.+.+.. +........++..+.+.|++++|..+++.+.. .+...|..+...+...
T Consensus 400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC
Confidence 7788888999999999999999998875 33455667788899999999999999998865 3566899999999999
Q ss_pred CCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHH
Q 036160 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311 (601)
Q Consensus 232 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 311 (601)
|++++|...|+++.... +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+.+.|+.++|...+
T Consensus 479 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998763 3455677788889999999999999999998765 345667778888888888888888888
Q ss_pred hhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCc
Q 036160 312 DSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388 (601)
Q Consensus 312 ~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 388 (601)
+++.+. +...+..+...+...|++++|..+++++... .+.+..++..+..++...|+++.|...++.+.+.. +.+
T Consensus 557 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 634 (899)
T TIGR02917 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS 634 (899)
T ss_pred HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 876432 3445566667777777777777777776654 23455666666666777777777777766666543 224
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHcCCC---CC----------------------------------CHhHHHHHHHHHH
Q 036160 389 MFVSTALVAMYAKCGSIDDAEAVFKGSA---LR----------------------------------DTASWNMMIGGYV 431 (601)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~----------------------------------~~~~~~~l~~~~~ 431 (601)
...+..+..++.+.|++++|...++++. +. +...+..+...+.
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHH
Confidence 4455556666666666666666665433 22 3334444555555
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036160 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 511 (601)
..|++++|.+.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..++..|.+.|++++|.
T Consensus 715 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 566666666666665553 344455556666666677777777777666654 3445667777778888888888888
Q ss_pred HHhHhc-CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 512 NFITET-KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 512 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+.|+++ ...| ++.+++.++..+...|+ ++|+..++++++..|+++..+..++.++...|++++|.++++++.+.++.
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888873 2334 67778888888888888 77888888888888888888888888888899999999999988887664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.6e-26 Score=252.17 Aligned_cols=570 Identities=11% Similarity=0.026 Sum_probs=407.4
Q ss_pred hHHHHhccCC---CCCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchH-----------------HHHHHHHh
Q 036160 3 LAKRVFKSMP---ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSL-----------------STVLKGFA 62 (601)
Q Consensus 3 ~a~~~f~~~~---~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~ll~~~~ 62 (601)
.|.+.+.++. ..|+..+..++..+.+.|+.++|.+.++++.+.. |+...+ ..+.+.+.
T Consensus 46 ~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~ 123 (1157)
T PRK11447 46 LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLA 123 (1157)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 3444554443 3366778888899999999999999999998854 443322 23344677
Q ss_pred ccCchhhhHHHHHHHHHhcCCCChh-HHhhHHHHhhcCCChhHHHHHHhcCCC--C-CccchHHHHHHHHhcCChhHHHH
Q 036160 63 NSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKD--P-DVVAWGAIITCLDQQGCCQEAAK 138 (601)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 138 (601)
..|++++|.+.|+.+.+.. +|+.. ............|+.++|.+.++++.+ | +...+..+...+...|++++|++
T Consensus 124 ~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~ 202 (1157)
T PRK11447 124 TTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFA 202 (1157)
T ss_pred hCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8899999999999988754 33322 111112222345889999999988875 4 34466777788888899999999
Q ss_pred HHHHHHHcCC------------------C--------------CChhhH---------------------HHHHHHHhcc
Q 036160 139 IFNLMRESSV------------------K--------------PNQFVL---------------------TSLVRATTET 165 (601)
Q Consensus 139 ~~~~m~~~~~------------------~--------------p~~~~~---------------------~~ll~~~~~~ 165 (601)
.++++.+... . |+...+ ......+...
T Consensus 203 ~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~ 282 (1157)
T PRK11447 203 VLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS 282 (1157)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC
Confidence 8888754310 0 110000 0112334566
Q ss_pred CCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC--CCcc---cHHH------------HHHHH
Q 036160 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSV---SWNA------------LFSRF 228 (601)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~~------------li~~~ 228 (601)
|++++|...++..++.. +.+...+..+..++.+.|++++|...|++..+ |+.. .|.. ....+
T Consensus 283 g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 78888888888887764 44677788888888888888888888887755 2211 1211 23456
Q ss_pred hcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHH
Q 036160 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308 (601)
Q Consensus 229 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 308 (601)
.+.|++++|...|++..... +.+...+..+...+...|+++.|.+.++++.+... .+...+..+...|. .++.++|.
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHH
Confidence 67888888888888887763 23455666677788888888888888888887642 23344555556554 45678888
Q ss_pred HHHhhCCCCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHH
Q 036160 309 VAFDSLANKD------------LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376 (601)
Q Consensus 309 ~~~~~~~~~~------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 376 (601)
..++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|+.++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8877665321 1234455667788999999999999988753 22455667788889999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC----CH---------hHHHHHHHHHHhCCChHHHHHHH
Q 036160 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR----DT---------ASWNMMIGGYVKHGLGEKALEAF 443 (601)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~A~~~~ 443 (601)
++.+.+... .+...+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|.+++
T Consensus 518 l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 999887542 34444555556677889999999999887632 11 11234566788999999999998
Q ss_pred HHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-
Q 036160 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP- 521 (601)
Q Consensus 444 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 521 (601)
+. .+++...+..+...+.+.|++++|++.|+.+.+. -+.+...+..++.+|...|++++|++.++++ ...|
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 72 2445567778888999999999999999999875 2334788999999999999999999999984 3556
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc------ceeehhhhhhhcCChhhHHHHHHHHHh-cCC
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES------NYVFPSDISATQGRWNDFSGVRALLSS-QGI 588 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 588 (601)
+...+..++.++...|++++|.+.++++++..|+++. .+..++.++...|++++|+..|++... .|+
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 5667778888999999999999999999998876553 455678899999999999999998863 444
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.7e-25 Score=242.68 Aligned_cols=562 Identities=10% Similarity=0.025 Sum_probs=331.9
Q ss_pred HHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhH----------
Q 036160 19 WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFL---------- 88 (601)
Q Consensus 19 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------- 88 (601)
.-..++.+...++.+.|.+.++++.... +.++..+..++..+.+.|+.++|.+.++...+..+. +...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 3445667888999999999999998753 346778899999999999999999999999987632 3222
Q ss_pred ------HhhHHHHhhcCCChhHHHHHHhcCCC--CCccchH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 036160 89 ------SCSLVDMYSKCGLADNALKVFYRIKD--PDVVAWG--AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSL 158 (601)
Q Consensus 89 ------~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 158 (601)
...+...+.+.|++++|.+.|+...+ |+..... .........|+.++|++.++++.+.. +-+...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 13334467889999999999999876 3222111 11112234599999999999999863 4456677888
Q ss_pred HHHHhccCCcchhhHHHHHHHHHCCC----------------Cchh---HHHHHHHHHHhcCCccHHHHHHhhcCC--CC
Q 036160 159 VRATTETGDQRCGESIHAVICKYGFE----------------SDTL---VGNALVSMYMENGRVSYGSRVFEAIAH--QD 217 (601)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~----------------~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 217 (601)
...+...|+.++|.+.++++.+.... ++.. .+...+..+-.....+.|...+..... .+
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 88899999999999999987653210 0000 011111111111111222222222111 01
Q ss_pred cc-cHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCc-chh----
Q 036160 218 SV-SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH-VVG---- 291 (601)
Q Consensus 218 ~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~---- 291 (601)
+. ........+...|++++|+..|++..... +.+...+..+..++.+.|++++|...+++..+....... ..+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 10 00112233444455555555555444431 113344444444444555555555555544443221110 000
Q ss_pred --------hHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---
Q 036160 292 --------TSLVDMYDKSGCLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL--- 357 (601)
Q Consensus 292 --------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--- 357 (601)
......+.+.|++++|...|++..+. +...+..+...+...|++++|++.|++..+.. +.+...+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 01122334445555555555444321 22333344444445555555555555444321 1112222
Q ss_pred ---------------------------------------HHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036160 358 ---------------------------------------ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398 (601)
Q Consensus 358 ---------------------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (601)
......+...|+.++|.+.++...+... .+...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 2233334455666666666666555432 234445556666
Q ss_pred HHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh---------hHHHHHHHhh
Q 036160 399 YAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI---------TFVVVLSACS 466 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~~~~~ 466 (601)
|.+.|++++|...+++.. +.+...+..+...+...++.++|+..++++......++.. .+..+...+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 666666666666665442 2233344444444455566666666665543322111111 1223345566
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHH
Q 036160 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEK 544 (601)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 544 (601)
..|+.++|.++++ . .+++...+..+...+.+.|++++|++.+++ +...| +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~----~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLR----Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHH----h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6777777777765 1 244566778889999999999999999998 44566 67888999999999999999999
Q ss_pred HHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCCC
Q 036160 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592 (601)
Q Consensus 545 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 592 (601)
.++++.+..|+++..+..++.++...|++++|.++++++.+..++..|
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 999999999999999999999999999999999999998876544333
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=7.5e-24 Score=220.56 Aligned_cols=543 Identities=8% Similarity=-0.068 Sum_probs=339.9
Q ss_pred CCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHH
Q 036160 29 SGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108 (601)
Q Consensus 29 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 108 (601)
.|++++|+..|+...+.. |-+..++..+.+.+...|+.++|....+...+... -|...+..+ ..+ ++.++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHHHH
Confidence 377777777777777653 22355667777777777777777777777776432 233333333 222 667777777
Q ss_pred HhcCCC--CCc-cchHHHHHHH-----HhcCChhHHHHHHHHHHHcCCCCChhhHHHH-HHHHhccCCcchhhHHHHHHH
Q 036160 109 FYRIKD--PDV-VAWGAIITCL-----DQQGCCQEAAKIFNLMRESSVKPNQFVLTSL-VRATTETGDQRCGESIHAVIC 179 (601)
Q Consensus 109 ~~~~~~--~~~-~~~~~li~~~-----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~ 179 (601)
++++.. |+. ..+..+.... ....+.++|.+.++ .......|+..+.... .+.+...++++.|++++..+.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 777664 332 2333333320 11222344444444 3332223334434444 666777777777777777777
Q ss_pred HHCCCCchhHHHHHHHHHHh-cCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCC-CCHhhHH
Q 036160 180 KYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK-PNMCTFI 257 (601)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~ 257 (601)
+.+ +.+......|..+|.. .++ +.+..+++...+.++..+..+...+.+.|+.++|...++++...-.. |+..++.
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 765 3344445556566666 355 66666655544456666777777777777777777777665443211 2222222
Q ss_pred HH------------------------------HHHhcCCCChhHHHHH-----------------------------HHH
Q 036160 258 VI------------------------------LKACSSLSDVGFGKQL-----------------------------HAH 278 (601)
Q Consensus 258 ~l------------------------------l~~~~~~~~~~~a~~~-----------------------------~~~ 278 (601)
.+ +..+.+.++++.++++ +..
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 22 1222233333322222 111
Q ss_pred HHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC-C-C----cccHHHHHHHHHhcCC---hhHHHHH--------
Q 036160 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN-K-D----LFAYTAIITSYAQAGE---AEMALKC-------- 341 (601)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~----~~~~~~ll~~~~~~g~---~~~a~~~-------- 341 (601)
+.+.. +-+......+.-.....|+.++|..+|+..-. + + ...-.-++..|.+.+. ..++..+
T Consensus 368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 11110 11111122222334566778888888877654 1 1 1223355666666655 3333322
Q ss_pred --------------HHHHHHc-CC-CC--CHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036160 342 --------------FRKMRLE-GI-KS--NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403 (601)
Q Consensus 342 --------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (601)
+...... +. ++ +...+..+..++.. ++..+|...+....... |+......+...+...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCC
Confidence 1111111 11 22 45555555555555 78888888777766554 44444444555567899
Q ss_pred CHHHHHHHHcCCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHH
Q 036160 404 SIDDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSS 480 (601)
Q Consensus 404 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 480 (601)
++++|...|+++. .++...+..+..++.+.|++++|...+++..+. .|+.. .+..+.......|++++|...+++
T Consensus 524 r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999998655 344455667778889999999999999999885 34443 333444455566999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 481 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
..+. .|+...+..+..++.+.|++++|+..+++ +...| +...+..++.++...|++++|+..++++++..|+++.
T Consensus 602 AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 602 SLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 8864 67788899999999999999999999998 55677 6778888889999999999999999999999999999
Q ss_pred ceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 559 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
.+..++.++...|++++|+..+++..+..+.
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998875553
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.5e-23 Score=215.58 Aligned_cols=564 Identities=9% Similarity=0.012 Sum_probs=405.5
Q ss_pred hHHHHhccCCC--C-CcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHH
Q 036160 3 LAKRVFKSMPE--L-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79 (601)
Q Consensus 3 ~a~~~f~~~~~--~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 79 (601)
+|...|..... | ++.++..|...|...|++++|...+++..+. .|+-..|..++..+ ++.++|..+++++.+
T Consensus 62 ~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHH
Confidence 45555655532 3 4667899999999999999999999999985 45545555544333 889999999999998
Q ss_pred hcCCCChhHHhhHHHH--------hhcCCChhHHHHHHhcCCCCC--ccchHH-HHHHHHhcCChhHHHHHHHHHHHcCC
Q 036160 80 LGCALDKFLSCSLVDM--------YSKCGLADNALKVFYRIKDPD--VVAWGA-IITCLDQQGCCQEAAKIFNLMRESSV 148 (601)
Q Consensus 80 ~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~ 148 (601)
..+. +..++..+... |.+.++..++++ .+...|+ ..+... +.+.|.+.|++++|++++.++.+.+
T Consensus 137 ~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~- 212 (987)
T PRK09782 137 QQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN- 212 (987)
T ss_pred hCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-
Confidence 7643 44555555554 777766666666 3333343 333344 4789999999999999999999985
Q ss_pred CCChhhHHHHHHHHhc-cCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC-----CCccc--
Q 036160 149 KPNQFVLTSLVRATTE-TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-----QDSVS-- 220 (601)
Q Consensus 149 ~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~-- 220 (601)
+.+..-...+-.++.. .++ +.+..+++. .++.+......+...|.+.|+.++|.+.++++.. |...+
T Consensus 213 pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 213 TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 3344445666667766 356 666666442 3346788999999999999999999999998854 11111
Q ss_pred ----------------------------HHHHHHHHhcCCCchhHHHHHH-----------------------------H
Q 036160 221 ----------------------------WNALFSRFQDYESPDQGLRIFY-----------------------------Q 243 (601)
Q Consensus 221 ----------------------------~~~li~~~~~~~~~~~a~~~~~-----------------------------~ 243 (601)
.-.++..+.+.++++.+.++.. .
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 1112445556666665554421 1
Q ss_pred HHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHc-c-CCCCcchhhHHHHHHHhcCC---HHHHHHHH-------
Q 036160 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH-S-LDGNHVVGTSLVDMYDKSGC---LEDAGVAF------- 311 (601)
Q Consensus 244 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~~------- 311 (601)
|... .+-+....-.+.-.....|+.++|.+++...... + -..+......++..|.+.+. ..++..+-
T Consensus 368 ~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 1111 0012222222233345678888999998887763 1 22344455678888887766 33333331
Q ss_pred ------------------hhCCC---C--CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC
Q 036160 312 ------------------DSLAN---K--DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368 (601)
Q Consensus 312 ------------------~~~~~---~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 368 (601)
..... . +...|..+..++.. +++++|+..+.+.... .|+......+...+...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 11111 1 34456666666666 8899999988887765 466655444555557899
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCC---HhHHHHHHHHHHhCCChHHHHHHHHH
Q 036160 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD---TASWNMMIGGYVKHGLGEKALEAFRM 445 (601)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (601)
+.+.|...++.+... +|+...+..+...+.+.|++++|...+++....+ ...+..+.......|++++|...+++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999987554 3444456677788899999999999998766333 23333333444556999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-c
Q 036160 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-N 522 (601)
Q Consensus 446 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~ 522 (601)
..+. .|+...+..+..++.+.|++++|...+++..+. .|+ ...+..+..++...|++++|++.+++ +...| +
T Consensus 602 AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 602 SLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9984 678788999999999999999999999999875 555 77888999999999999999999998 55677 7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCC
Q 036160 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591 (601)
Q Consensus 523 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 591 (601)
...+..++.++...|++++|+..++++++..|++..+....+++.....+++.|.+-+++....++...
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 889999999999999999999999999999999999999999999999999999999888776655443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=7.7e-22 Score=182.65 Aligned_cols=441 Identities=15% Similarity=0.117 Sum_probs=345.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcC
Q 036160 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201 (601)
Q Consensus 122 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (601)
.|..-..+.|++++|++.-...-+.+ +.+......+-..+.+..+++...+.-....+.. +.-..+|..+.+.+...|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 44445567788888877665554432 2222223333334445555554444333333322 344678888888888889
Q ss_pred CccHHHHHHhhcCCC---CcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHH-HHHHHhcCCCChhHHHHHHH
Q 036160 202 RVSYGSRVFEAIAHQ---DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI-VILKACSSLSDVGFGKQLHA 277 (601)
Q Consensus 202 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~ 277 (601)
+++.|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+.......|++++|..-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999988888662 4567888888999999999999988887765 45544332 23334445788888888887
Q ss_pred HHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-
Q 036160 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL---FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN- 353 (601)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~- 353 (601)
+.++... .-...|+.|...+-..|+...|+..|++...-|+ ..|-.+...|...+.+++|...|.+... ..|+
T Consensus 209 kAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~ 285 (966)
T KOG4626|consen 209 KAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNH 285 (966)
T ss_pred HHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcc
Confidence 7776542 3356778888899999999999999999876554 5678888899999999999999988766 3565
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHH
Q 036160 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGY 430 (601)
Q Consensus 354 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 430 (601)
...+..+...|-..|.++.|+..+++..+... .-+..|+.|..++...|++.+|.+.+.+.. .....+.+.|...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45677777788899999999999999887642 236788999999999999999999998755 45677899999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChH
Q 036160 431 VKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFT 508 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 508 (601)
...|.++.|..+|....+ +.|.. ..++.|...|-+.|++++|+.-+++..+ +.|+ ...|+.+...|...|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999988 57775 4789999999999999999999998874 6888 789999999999999999
Q ss_pred HHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhh
Q 036160 509 EIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575 (601)
Q Consensus 509 ~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 575 (601)
.|.+.+.+ +.+.| -...++.|...|...|+..+|++.|+.+++++|+.+.++-+++.++.--.+|.+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999988 66788 578999999999999999999999999999999999999999988776666665
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-21 Score=179.57 Aligned_cols=421 Identities=13% Similarity=0.143 Sum_probs=335.2
Q ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC---CCcccHHHHHHHHhcC
Q 036160 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDY 231 (601)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 231 (601)
...|..-..+.|++.+|++.-...-..+ +.+....-.+-..+....+.+.....-....+ .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3445555667788888887666554432 33333333444556666666655444333333 2345789999999999
Q ss_pred CCchhHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcch-hhHHHHHHHhcCCHHHHHH
Q 036160 232 ESPDQGLRIFYQMLLKGFKP-NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV-GTSLVDMYDKSGCLEDAGV 309 (601)
Q Consensus 232 ~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~ 309 (601)
|+.++|+.+++.+.+. .| ....|..+..++...|+.+.|.+.+.+..+. .|+... .+.+...+...|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999987 44 5678889999999999999999999988775 343332 2345555666899999999
Q ss_pred HHhhCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHhhcCCCchhhHHHHHHHHHHhCC
Q 036160 310 AFDSLANKD---LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE-FTLASCLNGCSPVATLANGRLLHSIAVKTGH 385 (601)
Q Consensus 310 ~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 385 (601)
.+.+..+.+ .+.|+.+...+..+|+...|+..|++..+ +.|+. ..|-.+-..+...+.+++|...+.......
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 888866543 36799999999999999999999999877 45553 356667777777777777777776665432
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHcCCC--CC-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHH
Q 036160 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSA--LR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVV 461 (601)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l 461 (601)
+....++..+...|...|.+|-|+..+++.. +| -+..|+.|..++-..|+..+|...|.+.... .|+. ...+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 2245566677888999999999999999765 33 4678999999999999999999999999984 6665 488999
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc-HHHHHHHHHHHHhcCC
Q 036160 462 LSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPN-ALVWENLLGACSWHGN 538 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~ 538 (601)
...|...|.+++|..+|....+ +.|. ...++.|...|..+|++++|+.-+++ +.+.|. ...++.+++.|...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 9999999999999999998865 5677 67899999999999999999999998 678895 6899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 539 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
.+.|++.+.+++..+|.-..++.+|+.+|...|+..+|+.-++...+..+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999998876544
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=6.2e-20 Score=188.58 Aligned_cols=417 Identities=13% Similarity=0.039 Sum_probs=255.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhc
Q 036160 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200 (601)
Q Consensus 121 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (601)
......+.+.|++++|+..|++..+. .|+...|..+..++...|+++.|...++..++.. +.+...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34455667778888888888877653 5676777777777777777777777777777653 33455667777777777
Q ss_pred CCccHHHHHHhhcCCCCcc---cHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHH
Q 036160 201 GRVSYGSRVFEAIAHQDSV---SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277 (601)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 277 (601)
|++++|...|..+...+.. ....++..+.. ..+........... +++...+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~------------------- 263 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTF------------------- 263 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHH-------------------
Confidence 7777777666543221110 00111111000 11111122221110 111111111
Q ss_pred HHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHH---HHhcCChhHHHHHHHHHHHcC-C
Q 036160 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL---FAYTAIITS---YAQAGEAEMALKCFRKMRLEG-I 350 (601)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~~-~ 350 (601)
+. .|...........-+....+.+. ..+..+... ....+++++|.+.|++....+ .
T Consensus 264 ----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 264 ----------------VG-NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred ----------------HH-HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 11 11111011111111111111010 011111111 122356777777777777654 2
Q ss_pred CCC-HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHH
Q 036160 351 KSN-EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMM 426 (601)
Q Consensus 351 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 426 (601)
.|+ ...+..+...+...|++++|...++...+.. +.....|..+..++...|++++|...|++.. +.+...|..+
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 232 3345555556667777777777777776653 2234566677777888888888888887544 4467788888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036160 427 IGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505 (601)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 505 (601)
...+...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|+..++...+. .+.+...+..++.++...|
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcc
Confidence 88888889999999999888874 454 456777778888889999999999888764 2334677888888889999
Q ss_pred ChHHHHHHhHh-cCCCCcH-HH-------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhH
Q 036160 506 KFTEIENFITE-TKLTPNA-LV-------WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDF 576 (601)
Q Consensus 506 ~~~~A~~~~~~-~~~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 576 (601)
++++|++.|++ +.+.|+. .. ++.....+...|++++|+++++++++++|++...+..++.++...|++++|
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 99999998887 4444431 11 111222334468899999999999999998888888899999999999999
Q ss_pred HHHHHHHHhc
Q 036160 577 SGVRALLSSQ 586 (601)
Q Consensus 577 ~~~~~~~~~~ 586 (601)
+.+|++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.5e-19 Score=172.08 Aligned_cols=577 Identities=13% Similarity=0.041 Sum_probs=399.0
Q ss_pred chHHHHhccCCCCCcc-cHHHHHHHH--hhCCChhhHHHHHHhhhhcC--CCCCcchHHHHHHHHhccCchhhhHHHHHH
Q 036160 2 ELAKRVFKSMPELNVV-SWNALLNGY--AESGDGQKVMHLFCSMKDME--KKFSKFSLSTVLKGFANSGYIKAGQVVHAM 76 (601)
Q Consensus 2 ~~a~~~f~~~~~~~~~-~y~~li~~~--~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 76 (601)
+.|.+.|....+.++. ....+..++ ...+++..|+.+|+...... .+||+ .-.+-.++.+.++.+.|...|..
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHH
Confidence 4566666555321111 222344444 45678999999999976543 33443 23334566788999999999999
Q ss_pred HHHhcCCCChhHHhhHHHHhhcC---CChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCC-
Q 036160 77 AIRLGCALDKFLSCSLVDMYSKC---GLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK- 149 (601)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 149 (601)
..+.++ .++.++..|...-... ..+..+..++...-. .++...+.|...|.-.|+++.++.+.+.+......
T Consensus 225 alqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 225 ALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 887653 2444444443333333 344555555555432 56777888889999999999999999988765311
Q ss_pred -CChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCC---CcccHHHHH
Q 036160 150 -PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ---DSVSWNALF 225 (601)
Q Consensus 150 -p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li 225 (601)
.-...|..+.+++-..|+++.|...|.+..+..-..-...+--+...|++.|+++.+...|+.+... +..+...+.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 1234588889999999999999999988777632222344556788999999999999999998763 334555555
Q ss_pred HHHhcCC----CchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHH----HHHccCCCCcchhhHHHHH
Q 036160 226 SRFQDYE----SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH----TIKHSLDGNHVVGTSLVDM 297 (601)
Q Consensus 226 ~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~ 297 (601)
..|...+ ..+.|..++.+....- +.|...|..+...+.... +......+.. +...+-.+.+...|.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 5555554 3456666666655442 345666766666555443 3333555443 3455666788889999999
Q ss_pred HHhcCCHHHHHHHHhhCCCC-------Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHh
Q 036160 298 YDKSGCLEDAGVAFDSLANK-------DLF------AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT-LASCLNG 363 (601)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~-------~~~------~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~ 363 (601)
+...|+++.|...|+..... +.. +--.+...+-..++++.|.+.|..+.+. .|+-+. |..+...
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~m 539 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCM 539 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHH
Confidence 99999999999999876432 221 1112344455567899999999999875 455443 3333323
Q ss_pred hcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-----CCCHhHHHHHHHHHH-------
Q 036160 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-----LRDTASWNMMIGGYV------- 431 (601)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~------- 431 (601)
....++..+|...+....... ..++..++.+...+.+...+..|.+-|+.+. .+|..+.-.|.+.|.
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 334567778888887776643 3355566667778888888888877444332 335444444555443
Q ss_pred -----hCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036160 432 -----KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506 (601)
Q Consensus 432 -----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 506 (601)
..+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+.++. ..-...+|-.++.+|..+|+
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHH
Confidence 2345688999999988852 445567788888899999999999999999987 33456788899999999999
Q ss_pred hHHHHHHhHh-cC---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhh-------------
Q 036160 507 FTEIENFITE-TK---LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT------------- 569 (601)
Q Consensus 507 ~~~A~~~~~~-~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~------------- 569 (601)
+-.|+++|+. +. -..+..+...|+.++.+.|.+.+|.+.+..+....|.|+...++++.+..+
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 9999999997 32 234788999999999999999999999999999999999988887766543
Q ss_pred ------cCChhhHHHHHHHHHhcCCc
Q 036160 570 ------QGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 570 ------~g~~~~A~~~~~~~~~~~~~ 589 (601)
.+..++|.++|..|...+.+
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45678888899888876554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.7e-20 Score=181.97 Aligned_cols=289 Identities=14% Similarity=0.112 Sum_probs=178.5
Q ss_pred hcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCC-------cccHHHHHHHHHhcCCh
Q 036160 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD-------LFAYTAIITSYAQAGEA 335 (601)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~ 335 (601)
+...|+++.|...+..+.+.+ +.+..++..+...+...|++++|..+++.+.... ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555666666666665542 1223344445555555555555555554443311 12234444444555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCC
Q 036160 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415 (601)
Q Consensus 336 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 415 (601)
++|..+|+++.+. . +.+..++..++.++.+.|++++|.+.++.+
T Consensus 124 ~~A~~~~~~~l~~-----------------------------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 124 DRAEELFLQLVDE-----------------------------------G-DFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHcC-----------------------------------C-cchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 5555555554432 1 223344455555555555555555555543
Q ss_pred CCC---C-----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhC
Q 036160 416 ALR---D-----TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486 (601)
Q Consensus 416 ~~~---~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 486 (601)
... + ...+..+...+.+.|++++|.+.++++.+. .|+ ...+..+...+.+.|++++|.+.++++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 311 0 113455666777888888888888888774 344 446667777888888888888888888764
Q ss_pred CCCC--hhHHHHHHHHHHhcCChHHHHHHhHhc-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeeh
Q 036160 487 ITPT--IKHFACMIDILGRAGKFTEIENFITET-KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563 (601)
Q Consensus 487 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 563 (601)
.|+ ..++..++.+|.+.|++++|...++++ ...|+...+..++..+.+.|++++|...++++++..|++.. +..+
T Consensus 244 -~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l 321 (389)
T PRK11788 244 -DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRL 321 (389)
T ss_pred -ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHH
Confidence 233 456777888888888888888888873 35677666677788888888888888888888888886653 3333
Q ss_pred hhhhhh---cCChhhHHHHHHHHHhcCCcCCCce
Q 036160 564 SDISAT---QGRWNDFSGVRALLSSQGIKKEPSC 594 (601)
Q Consensus 564 ~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 594 (601)
...+.. .|+.++|..++++|.+++++++|.+
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 333332 5588888888888888888888764
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.4e-17 Score=174.26 Aligned_cols=391 Identities=9% Similarity=-0.025 Sum_probs=173.3
Q ss_pred HHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC---CCcccHHHHHHHHhcCCCch
Q 036160 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDYESPD 235 (601)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 235 (601)
+......|+.++|.+++....... +.+...+..+...+...|++++|..+|++... .+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 333344444444444444443311 22233344444444444444444444444322 12223344444445555555
Q ss_pred hHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCC
Q 036160 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315 (601)
Q Consensus 236 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 315 (601)
+|+..+++.... .+.+.. +..+..++...|+.+.|...++.+.+.... +...+..+...+...+..+.|.+.++...
T Consensus 101 eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 555555555443 111222 444444445555555555555555544322 22233344555555566666666665554
Q ss_pred CCCcc--------cHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHhhcCCCchhhH
Q 036160 316 NKDLF--------AYTAIITSYA-----QAGEA---EMALKCFRKMRLE-GIKSNEF-TLA----SCLNGCSPVATLANG 373 (601)
Q Consensus 316 ~~~~~--------~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~a 373 (601)
. ++. .....+.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.++|
T Consensus 178 ~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 178 L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 4 111 1111111111 11223 5566666666643 1122211 110 002223344555555
Q ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCC-------HhHHHHHHHHHHhCCChHHHHHHHHH
Q 036160 374 RLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD-------TASWNMMIGGYVKHGLGEKALEAFRM 445 (601)
Q Consensus 374 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (601)
...|+.+.+.+.+ |+- ....+...|...|++++|...|+++...+ ......+..++...|++++|.+.+++
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5555555554321 111 11113445555555555555555433111 12233344445555555555555555
Q ss_pred HHHcC-----------CCCCH---hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036160 446 MLDEG-----------YVPDE---ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511 (601)
Q Consensus 446 m~~~~-----------~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 511 (601)
+.+.. -.|+. ..+..+...+...|++++|++.++++... .+.+...+..++..+...|++++|+
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 55431 01121 12233444455555555555555555443 2222445555555555555555555
Q ss_pred HHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 512 NFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 512 ~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
+.+++ +...| +...+...+..+...|++++|+..++++++..|+++
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 55555 23444 234444444555555555555555555555555544
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=7.2e-18 Score=172.51 Aligned_cols=345 Identities=12% Similarity=-0.010 Sum_probs=254.7
Q ss_pred cHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHH
Q 036160 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299 (601)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (601)
....++..+.+.|++++|..+++........ +...+..++.++...|+++.|...++.+.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455667777888888888888877766322 23344455566667888888888888887764 334456677778888
Q ss_pred hcCCHHHHHHHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHH
Q 036160 300 KSGCLEDAGVAFDSLAN--K-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376 (601)
Q Consensus 300 ~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 376 (601)
..|++++|...+++..+ | +...+..+...+...|++++|...++++......+.. .+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHH
Confidence 88888888888888654 2 4566777888888899999999988887665433322 22222 346778888899888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHH----HHHHHHHHHHc
Q 036160 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEK----ALEAFRMMLDE 449 (601)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~ 449 (601)
++.+.+....++......+...+.+.|++++|...+++.. +.+...+..+...+...|++++ |...|++..+.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 8887766444444455556677888899999988887654 4467778888889999999885 78999998874
Q ss_pred CCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhc-CCCCcHH-H
Q 036160 450 GYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITET-KLTPNAL-V 525 (601)
Q Consensus 450 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~ 525 (601)
.|+. ..+..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|+..++++ ...|+.. .
T Consensus 280 --~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 280 --NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 5554 57888888999999999999999988865 454 567778889999999999999999884 3567543 3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
+..++.++...|+.++|+..++++++..|++. ...+++|...+....+
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHH
Confidence 44456778899999999999999999999764 3455567766666654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.7e-18 Score=179.54 Aligned_cols=399 Identities=10% Similarity=-0.003 Sum_probs=301.7
Q ss_pred CCchhHHHHHHHHHHhcCCccHHHHHHhhcCC-C--CcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHH
Q 036160 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-Q--DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260 (601)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 260 (601)
+.+.....-.+......|+.++|++++..... . +...+..+...+...|++++|...+++..... +.+......+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45566666777888899999999999999875 2 33348889999999999999999999988762 33456667788
Q ss_pred HHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhcCChhH
Q 036160 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEM 337 (601)
Q Consensus 261 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 337 (601)
..+...|+++.|...++.+.+.. +.+.. +..+...+...|+.++|...++++.+. +...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 88899999999999999999874 33344 788889999999999999999998763 44556667778888999999
Q ss_pred HHHHHHHHHHcCCCCCHH------HHHHHHHhh-----cCCCch---hhHHHHHHHHHHh-CCCCchh-HH-HH---HHH
Q 036160 338 ALKCFRKMRLEGIKSNEF------TLASCLNGC-----SPVATL---ANGRLLHSIAVKT-GHLLDMF-VS-TA---LVA 397 (601)
Q Consensus 338 a~~~~~~m~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~-~~---l~~ 397 (601)
|++.++.... .|+.. .....+... ...+++ +.|...++.+.+. ...|+.. .+ .. .+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886553 23210 111122222 122233 6678888888764 2233221 11 11 133
Q ss_pred HHHhcCCHHHHHHHHcCCCCCC---Hh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----hhHHHHHHHhhcc
Q 036160 398 MYAKCGSIDDAEAVFKGSALRD---TA-SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-----ITFVVVLSACSHM 468 (601)
Q Consensus 398 ~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~ 468 (601)
.+...|++++|...|+.+...+ +. .-..+..+|...|++++|+..|+++.+. .|.. .....+..++...
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhc
Confidence 4467799999999999877432 11 2222577899999999999999998864 3332 3456667788999
Q ss_pred CcHHHHHHHHHHHHHHhC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-cHHHHHHHHHHH
Q 036160 469 GLIEEGKKHFSSIKKIYG----------ITPT---IKHFACMIDILGRAGKFTEIENFITET-KLTP-NALVWENLLGAC 533 (601)
Q Consensus 469 ~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 533 (601)
|++++|.+.++.+.+... -.|+ ...+..++..+...|++++|++.++++ ...| +...+..++..+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999976410 0122 234566788999999999999999983 4556 778899999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
...|+.++|++.++++++++|+++..+..++.++...|++++|..+++.+.+..++.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999998765543
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.2e-16 Score=154.76 Aligned_cols=564 Identities=12% Similarity=0.059 Sum_probs=337.1
Q ss_pred CcccHHHHHHHHhhCCChhhHHHHHHhhhhcCC----CCCcc---hHHHHHHHHhccC-----------chhhhHHHHHH
Q 036160 15 NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK----KFSKF---SLSTVLKGFANSG-----------YIKAGQVVHAM 76 (601)
Q Consensus 15 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~---~~~~ll~~~~~~~-----------~~~~a~~~~~~ 76 (601)
...+|..+...|.+.|..++.+.+++.-....- .+... .++.+...++..+ -...|.-+|+.
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 455799999999999999999999988762110 11111 2222222222211 11223334443
Q ss_pred HHHhcCCCChhHHhhHHHHhhcCCC--hhHHHHHHhcCCCCCccch-HHHHHHH--HhcCChhHHHHHHHHHHHc--CCC
Q 036160 77 AIRLGCALDKFLSCSLVDMYSKCGL--ADNALKVFYRIKDPDVVAW-GAIITCL--DQQGCCQEAAKIFNLMRES--SVK 149 (601)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~-~~li~~~--~~~~~~~~a~~~~~~m~~~--~~~ 149 (601)
.-+.....+...+..- ..|...|+ .+.|...|......+..-. ..+.+++ ...+++..|+.+|...... ..+
T Consensus 120 A~ki~m~~~~~l~~~~-~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 120 ADKIDMYEDSHLLVQR-GFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHHhhccCcchhhhhh-hhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 3332222222211111 11222333 5788888887765222211 2233333 3568999999999986553 344
Q ss_pred CChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCC---ccHHHHHHhhcCC---CCcccHHH
Q 036160 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR---VSYGSRVFEAIAH---QDSVSWNA 223 (601)
Q Consensus 150 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~---~~~~~~~~ 223 (601)
||+.. .+-.++.+.++.+.|...|...++.+ |.++.++..|...-....+ +..+..++...-. .|++..+.
T Consensus 199 aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~ 275 (1018)
T KOG2002|consen 199 ADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNH 275 (1018)
T ss_pred CCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 55432 23356678899999999999988764 2334444443333333333 3444444444322 57888999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHCCC--CCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhc
Q 036160 224 LFSRFQDYESPDQGLRIFYQMLLKGF--KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301 (601)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 301 (601)
|...|.-.|++..++.+...+..... ..-..+|-.+.+++-..|+++.|..+|-+..+.........+--+..+|.+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 99999999999999999888876531 1234567788899999999999999998887764333334455688899999
Q ss_pred CCHHHHHHHHhhCCCC---CcccHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHH
Q 036160 302 GCLEDAGVAFDSLANK---DLFAYTAIITSYAQAG----EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374 (601)
Q Consensus 302 ~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 374 (601)
|+++.+...|+.+.+. +..+...+...|+..+ ..++|..++.+..+.- +.|...|..+...+.. ++.....
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL 433 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASL 433 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHH
Confidence 9999999999988653 3345555555565554 4466666666655542 3344455544444443 3333335
Q ss_pred HHHHHHH----HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-------CCCH------hHHHHHHHHHHhCCChH
Q 036160 375 LLHSIAV----KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-------LRDT------ASWNMMIGGYVKHGLGE 437 (601)
Q Consensus 375 ~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~------~~~~~l~~~~~~~~~~~ 437 (601)
.++..+. ..+..+.+...|.+...+...|+++.|...|++.. .++. .+--.+...+-..++++
T Consensus 434 ~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 5554433 45666788888889888899999999988886433 1122 12223455556667888
Q ss_pred HHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhH-
Q 036160 438 KALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT- 515 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~- 515 (601)
.|.+.|..+.+. .|+-. .|..++......+...+|...+...... ...++..++.++..+.+...+..|..-|.
T Consensus 514 ~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 514 VAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred HHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 888888888874 56554 4444442223345667777777766553 33344445555556665555555555332
Q ss_pred ---hcCCCCcHHHHHHHHHHHHh------------cCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHH
Q 036160 516 ---ETKLTPNALVWENLLGACSW------------HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVR 580 (601)
Q Consensus 516 ---~~~~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 580 (601)
+....+|+.+.-.|++.|.+ .+..++|+++|.+++..+|.|.-+-..++-+++..|++.+|+.+|
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHH
Confidence 22223455555555554431 134456666666666666666666666666666666666666666
Q ss_pred HHHHhcCC
Q 036160 581 ALLSSQGI 588 (601)
Q Consensus 581 ~~~~~~~~ 588 (601)
.++.+...
T Consensus 670 sqVrEa~~ 677 (1018)
T KOG2002|consen 670 SQVREATS 677 (1018)
T ss_pred HHHHHHHh
Confidence 66665433
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=2.2e-18 Score=176.30 Aligned_cols=354 Identities=11% Similarity=0.008 Sum_probs=277.3
Q ss_pred hcCCCchhHHHHHHHHHHCC--CCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHH
Q 036160 229 QDYESPDQGLRIFYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306 (601)
Q Consensus 229 ~~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 306 (601)
.+..+|+.-.-.|..-.++. -.-+......++..+.+.|+++.|..+++........+....+ .++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHH
Confidence 34445554444444333221 1123344566777888999999999999999988765544444 45566677999999
Q ss_pred HHHHHhhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 036160 307 AGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383 (601)
Q Consensus 307 a~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 383 (601)
|...|+++... +...+..+...+...|++++|...+++..... +.+...+..+...+...|+.+.|...+..+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999998753 45678888889999999999999999998752 334567778888899999999999999988776
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhH
Q 036160 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR----DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITF 458 (601)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~ 458 (601)
...+.. .+..+ ..+...|++++|...++.+... +...+..+..++...|++++|+..++++.+. .|+ ...+
T Consensus 174 ~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~ 249 (656)
T PRK15174 174 VPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALR 249 (656)
T ss_pred CCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 543333 33333 3478899999999999876532 3334555677889999999999999999985 454 4577
Q ss_pred HHHHHHhhccCcHHH----HHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHH
Q 036160 459 VVVLSACSHMGLIEE----GKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLG 531 (601)
Q Consensus 459 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~ 531 (601)
..+...+...|++++ |...++++.+. .|+ ...+..++..+.+.|++++|+..+++ +...| +...+..++.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 788899999999986 79999988765 455 77899999999999999999999998 44667 5678888999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCC
Q 036160 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591 (601)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 591 (601)
++.+.|++++|+..++++++..|+++..+..++.++...|++++|...|++..+..++..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999999999998877666778899999999999999999987766543
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=1.1e-16 Score=142.48 Aligned_cols=343 Identities=15% Similarity=0.117 Sum_probs=252.3
Q ss_pred cccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhc--cCchhhh-HHHHHHHHHhcCCCChhHHhhH
Q 036160 16 VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN--SGYIKAG-QVVHAMAIRLGCALDKFLSCSL 92 (601)
Q Consensus 16 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 92 (601)
+.+=|.|+.. ..+|.+..+.-+|+.|.+.|++.+...--.|++..+- ..++.-+ .+-|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 3355566554 6788999999999999999988887766666654443 3333322 2233334433321 22222
Q ss_pred HHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhh
Q 036160 93 VDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172 (601)
Q Consensus 93 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 172 (601)
+.|++.+ -+|+..+ .+..+|.+||.++++--..+.|.+++++......+.+..+||.+|.+-.-..+ .
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 4455544 4444444 45678999999999999999999999999998889999999999987654333 8
Q ss_pred HHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCC
Q 036160 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252 (601)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 252 (601)
+++.+|.+..+.||..|+|+++.+..+.|+++.|. ..|.+++.+|++-|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcc
Confidence 89999999999999999999999999999987766 556778889999999999
Q ss_pred HhhHHHHHHHhcCCCChhH-HHHHHHHHHHc----cCCC----CcchhhHHHHHHHhcCCHHHHHHHHhhCCCC------
Q 036160 253 MCTFIVILKACSSLSDVGF-GKQLHAHTIKH----SLDG----NHVVGTSLVDMYDKSGCLEDAGVAFDSLANK------ 317 (601)
Q Consensus 253 ~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 317 (601)
..+|..+|..+++.++..+ +..++.++... .+.| +...+..-+..+.+..+.+-|..+-.-+...
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 9999999998888887644 44444444432 2222 2334455666677778888777765544321
Q ss_pred -----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHH
Q 036160 318 -----DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392 (601)
Q Consensus 318 -----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 392 (601)
..+-|..+....|+....+.-+..|+.|.-.-+-|+..+...++.+....+.++-..++|..++..|.......-
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 223466778888888899999999999999888999999999999999999999999999999998876555555
Q ss_pred HHHHHHHHhc
Q 036160 393 TALVAMYAKC 402 (601)
Q Consensus 393 ~~l~~~~~~~ 402 (601)
.-+...+++.
T Consensus 472 eeil~~L~~~ 481 (625)
T KOG4422|consen 472 EEILMLLARD 481 (625)
T ss_pred HHHHHHHhcC
Confidence 5555555443
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.8e-17 Score=170.45 Aligned_cols=425 Identities=11% Similarity=0.009 Sum_probs=255.1
Q ss_pred HHhhHHHHhhcCCChhHHHHHHhcCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 036160 88 LSCSLVDMYSKCGLADNALKVFYRIKD--PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165 (601)
Q Consensus 88 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 165 (601)
.+......+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 344566778888999999999988765 777788888889999999999999999988753 33456788888889999
Q ss_pred CCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHH
Q 036160 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245 (601)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 245 (601)
|++++|..-+......+-..+.. ...++..+........+...++.-+ .+...+..+.. +...........-+..-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999988887665543211221 1222221111111233333333222 22223332222 222111121111111111
Q ss_pred HCCCCCCH-hhHHHHHH---HhcCCCChhHHHHHHHHHHHcc-CCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcc
Q 036160 246 LKGFKPNM-CTFIVILK---ACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320 (601)
Q Consensus 246 ~~g~~p~~-~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (601)
+ ..|+. ..+..+.. -....++++.|...++...+.+ ..|+ ...
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------~a~ 332 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------EAI 332 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh------------------------------hHH
Confidence 1 11110 00100000 0112344555555555555433 1111 112
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036160 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN-EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399 (601)
Q Consensus 321 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (601)
.|+.+...+...|++++|+..+++..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+..++
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444444445555555555555555443 232 3344444444555555555555555554442 22455666777778
Q ss_pred HhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHH
Q 036160 400 AKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGK 475 (601)
Q Consensus 400 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~ 475 (601)
...|++++|...|++.. +.+...+..+...+.+.|++++|+..|++..+. .|+ ...++.+...+...|++++|.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 88888888888887654 345667777888888999999999999988874 444 567888888899999999999
Q ss_pred HHHHHHHHHhCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHH
Q 036160 476 KHFSSIKKIYGITPTI-K-------HFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKD 545 (601)
Q Consensus 476 ~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 545 (601)
+.|+...+. .|+. . .++.....+...|++++|.+++++ +.+.| +...+..++..+.+.|++++|+..
T Consensus 488 ~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 488 EKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999988754 3321 1 111122233446899999999988 45666 456788889999999999999999
Q ss_pred HHHHHhcCCCC
Q 036160 546 AEKLLELEPKM 556 (601)
Q Consensus 546 ~~~~~~~~p~~ 556 (601)
++++.++.+..
T Consensus 565 ~e~A~~l~~~~ 575 (615)
T TIGR00990 565 FERAAELARTE 575 (615)
T ss_pred HHHHHHHhccH
Confidence 99999887753
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.5e-18 Score=168.09 Aligned_cols=291 Identities=15% Similarity=0.140 Sum_probs=229.2
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCC---cchhhHHHHHHHh
Q 036160 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN---HVVGTSLVDMYDK 300 (601)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 300 (601)
....+...|++++|...|.++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999873 23556788889999999999999999999987543222 2457788999999
Q ss_pred cCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHH
Q 036160 301 SGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377 (601)
Q Consensus 301 ~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 377 (601)
.|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------------- 179 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI-------------------- 179 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH--------------------
Confidence 9999999999999876 35667889999999999999999999999876533321100
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 036160 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454 (601)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 454 (601)
...+..+...+.+.|++++|...|+++. +.+...+..+...+.+.|++++|.++++++.+. .|+
T Consensus 180 -----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~ 246 (389)
T PRK11788 180 -----------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPE 246 (389)
T ss_pred -----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Chh
Confidence 1122345556666777777777776544 234557777888999999999999999999875 344
Q ss_pred --HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHH
Q 036160 455 --EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLG 531 (601)
Q Consensus 455 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~ 531 (601)
..++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..++++ +...|+...+..++.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 356788889999999999999999998765 57767778899999999999999999987 556798888888887
Q ss_pred HHHh---cCChhHHHHHHHHHHh
Q 036160 532 ACSW---HGNIELDEKDAEKLLE 551 (601)
Q Consensus 532 ~~~~---~g~~~~A~~~~~~~~~ 551 (601)
.+.. .|+.+++...++++++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHH
Confidence 7664 5588888888888875
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=3.8e-16 Score=160.08 Aligned_cols=439 Identities=10% Similarity=0.022 Sum_probs=294.9
Q ss_pred HHHhhcCCChhHHHHHHhcCCC--CCcc-chHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hH--HHHHHHHhccC
Q 036160 93 VDMYSKCGLADNALKVFYRIKD--PDVV-AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF-VL--TSLVRATTETG 166 (601)
Q Consensus 93 ~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~--~~ll~~~~~~~ 166 (601)
+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+.. .+ ..+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 3345678899999999988875 4431 22377788888899999998888877 33222 22 33345677778
Q ss_pred CcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhc--CCCchhHHHHHHHH
Q 036160 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD--YESPDQGLRIFYQM 244 (601)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m 244 (601)
+++.|.++++.+.+.. +.+...+..++..+...++.++|.+.++++...++.....+..++.. .++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999988875 44566777778888888888888888888877444433323334433 55555688888888
Q ss_pred HHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHH
Q 036160 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324 (601)
Q Consensus 245 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 324 (601)
.+.. +-+...+..+..++.+.|-...|.++...-. +..+-...... +.+.|.+..+....++.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----- 258 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----- 258 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhcccccc-----
Confidence 8773 2345566677777777777777766655422 11111110000 01111111111100000
Q ss_pred HHHHHHhcCC---hhHHHHHHHHHHHc-CCCCCH-H----HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHH
Q 036160 325 IITSYAQAGE---AEMALKCFRKMRLE-GIKSNE-F----TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395 (601)
Q Consensus 325 ll~~~~~~g~---~~~a~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 395 (601)
....+ .+.|+.-++.+... +..|.. . ...-.+-++...++..++++.++.+...+.+....+-.++
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00111 24455555555442 111321 1 2223455667778888888888888888776666677888
Q ss_pred HHHHHhcCCHHHHHHHHcCCCCC---------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----------CCCH
Q 036160 396 VAMYAKCGSIDDAEAVFKGSALR---------DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY-----------VPDE 455 (601)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~~ 455 (601)
.++|...+++++|..+++++..+ +......|.-++...+++++|..+++++.+..- .||+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 88888888888888888866421 222346788889999999999999999987311 1332
Q ss_pred --h-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-cHHHHHHHH
Q 036160 456 --I-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP-NALVWENLL 530 (601)
Q Consensus 456 --~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 530 (601)
. .+..++..+...|+..+|++.++.+... -+-|......+...+...|++.+|++.++.. .+.| +.......+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 2 3445567788999999999999999764 4556888999999999999999999999773 3677 566777888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcce
Q 036160 531 GACSWHGNIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
.++...|++++|..+...+.+..|+++.+-
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 889999999999999999999999887443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=9.9e-17 Score=142.67 Aligned_cols=266 Identities=15% Similarity=0.195 Sum_probs=204.1
Q ss_pred HHHhccCCCCCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCC
Q 036160 5 KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL 84 (601)
Q Consensus 5 ~~~f~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (601)
.-.|+..| .+..+|..||.++++....++|.+++++-.....+.+..+||.+|.+-.-. ...++..+|......|
T Consensus 197 dL~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence 33444433 366788999999999999999999999888877788889999998776533 3388888999989999
Q ss_pred ChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 036160 85 DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164 (601)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 164 (601)
|..|+|+++++..+.|+++.|.+. |++++.+|++-|+.|...+|..+|..+++
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 999999999988888888877663 56788889999999999999999998888
Q ss_pred cCCcch-hhHHHHHHHHH--C--C----CCchhHHHHHHHHHHhcCCccHHHHHHhhcCCC--------C---cccHHHH
Q 036160 165 TGDQRC-GESIHAVICKY--G--F----ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ--------D---SVSWNAL 224 (601)
Q Consensus 165 ~~~~~~-a~~~~~~~~~~--~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~l 224 (601)
.++..+ +..++.++... | + +.|...|...+..|.+..+.+-|.++-.-+... + ..-|.-+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 887654 45555555443 1 2 234556777788888888888887776555431 1 2235667
Q ss_pred HHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcC
Q 036160 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302 (601)
Q Consensus 225 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 302 (601)
....+.....+.-...|+.|..+-+-|+..+...++++....+.++..-+++..++..|.........-++..+++..
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 778888888999999999999988899999999999999999999999999999998876555555444444444443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=2.4e-15 Score=154.32 Aligned_cols=317 Identities=13% Similarity=0.021 Sum_probs=186.1
Q ss_pred HHHhhCCChhhHHHHHHhhhhcCCCCCc--chHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC
Q 036160 24 NGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101 (601)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (601)
-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...++.... .-+........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCC
Confidence 34478888889999998888753 443 233 777888888888899888888871 112233334444567778889
Q ss_pred hhHHHHHHhcCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHH
Q 036160 102 ADNALKVFYRIKD--P-DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178 (601)
Q Consensus 102 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 178 (601)
+++|.++|+++.+ | +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999988875 3 3455666777788888888898888888765 566556644444444455555588888888
Q ss_pred HHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCC-CcccHHH----HHHHHh---------cCCC---chhHHHHH
Q 036160 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNA----LFSRFQ---------DYES---PDQGLRIF 241 (601)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----li~~~~---------~~~~---~~~a~~~~ 241 (601)
.+.. |.+...+..+..++.+.|-...|.++...-++- +...+.- .+.-.+ ...+ .+.|+.-+
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 8875 556777788888888888888888887765531 1000000 000111 1111 23344444
Q ss_pred HHHHHC-CCCCCHhh-H----HHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCC
Q 036160 242 YQMLLK-GFKPNMCT-F----IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315 (601)
Q Consensus 242 ~~m~~~-g~~p~~~t-~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 315 (601)
+.+... +-.|.... | .-.+-++...++...+++.++.+...+.+....+-..+.++|...+.+++|..+|..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 444432 11122111 1 12233444555555555555555555544444444555555555555555555555543
Q ss_pred CCC---------cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 316 NKD---------LFAYTAIITSYAQAGEAEMALKCFRKMRL 347 (601)
Q Consensus 316 ~~~---------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 347 (601)
..+ ......|.-+|...+++++|..+++++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 211 11123344455555555555555555544
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=5.9e-17 Score=145.13 Aligned_cols=520 Identities=12% Similarity=0.072 Sum_probs=297.2
Q ss_pred HHHHHHHHhhCCChhhHHHHHHhhhh----cCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhH-HhhHH
Q 036160 19 WNALLNGYAESGDGQKVMHLFCSMKD----MEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFL-SCSLV 93 (601)
Q Consensus 19 y~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 93 (601)
+..-+.--...|+-++|+---++-.. .++..+-.++..|.+-|.......+|+..|+.+.+...-|+... -..+.
T Consensus 165 ~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnig 244 (840)
T KOG2003|consen 165 FKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIG 244 (840)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeec
Confidence 33344444555555555433322111 11222223344455555556666667777776666655555432 22344
Q ss_pred HHhhcCCChhHHHHHHhcCCC--CCc------cchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 036160 94 DMYSKCGLADNALKVFYRIKD--PDV------VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165 (601)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~~~~--~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 165 (601)
+.+.+...+.+|+++++.... |++ ...+.+--.+.+.|.++.|+..|+...+. .|+-.+-..|+-++..-
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 566666667777766655443 221 12222223455667777777777666654 46655544455555555
Q ss_pred CCcchhhHHHHHHHHHCCCCchhHH--------HHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCC--Cch
Q 036160 166 GDQRCGESIHAVICKYGFESDTLVG--------NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE--SPD 235 (601)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~--~~~ 235 (601)
|+-+...+.|..|+.....||..-| ..|+.--.+... +.-.-+.. +.+
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~----------------------lk~~ek~~ka~ae 380 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH----------------------LKNMEKENKADAE 380 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH----------------------HHHHHHhhhhhHH
Confidence 6666666666666654333332211 111111111111 00000000 011
Q ss_pred hHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCC
Q 036160 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315 (601)
Q Consensus 236 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 315 (601)
+++-.-..+...-+.||-.. ..+.+.+.+..-.-..+..+. --.-...|.+.|+++.|.++++-+.
T Consensus 381 k~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dl--ei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 381 KAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDL--EINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhh--hhhHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111111112222100 001111111100000000000 0112234566777777777777666
Q ss_pred CCCcccHHHH-----HHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCch
Q 036160 316 NKDLFAYTAI-----ITSYAQ-AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389 (601)
Q Consensus 316 ~~~~~~~~~l-----l~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 389 (601)
+.|..+-.+. +--|.+ ..++..|.++-+..... -+-|......--......|++++|.+.+.+.....-....
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 5544332221 112222 23455665555544332 1223333333333345568888888888877765433333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhh
Q 036160 390 FVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466 (601)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 466 (601)
..|+ +.-.+...|++++|++.|-++. ..+....-.+.+.|-...++.+|++++.+.... ++.|+..+..|...|-
T Consensus 526 alfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 526 ALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 3333 3344667899999999886544 567777778888999999999999999887764 4555678889999999
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC-CCCcHHHHHHHHHHH-HhcCChhHHHH
Q 036160 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-LTPNALVWENLLGAC-SWHGNIELDEK 544 (601)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-~~~g~~~~A~~ 544 (601)
+.|+-.+|.+.+-.--+ -++.+.++...|...|....-+++|+.+|++.. +.|+..-|..++..| .+.|++.+|.+
T Consensus 604 qegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999988765543 256679999999999999999999999999944 789999999998776 56799999999
Q ss_pred HHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHH
Q 036160 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 545 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
+|+......|.+...+..|.+++...|.. +|.++-++
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 99999999999999999999999998864 44444333
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=1.7e-13 Score=128.80 Aligned_cols=509 Identities=13% Similarity=0.052 Sum_probs=393.6
Q ss_pred HHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036160 71 QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD--PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSV 148 (601)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 148 (601)
.++++..+++ ++.++..|...+ .....++|.-++.+..+ |.. .-|.-++.+..-++.|..+++..++. +
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp~s---~dLwlAlarLetYenAkkvLNkaRe~-i 436 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCPQS---MDLWLALARLETYENAKKVLNKAREI-I 436 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 3444444442 344555555543 34556667777777665 221 23445667778899999999999875 7
Q ss_pred CCChhhHHHHHHHHhccCCcchhhHHHHHH----HHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC------CCc
Q 036160 149 KPNQFVLTSLVRATTETGDQRCGESIHAVI----CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH------QDS 218 (601)
Q Consensus 149 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~ 218 (601)
+-+...|.+....--..|+.+.+.++++.- ...|+..+...|-.=...|-..|..--+..+...+.. .-.
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 778888988888888889999888887654 4558888888888888888888888888888777654 223
Q ss_pred ccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHH
Q 036160 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298 (601)
Q Consensus 219 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (601)
.+|+.-...|.+.+.++-|..+|....+- .+-+...|......--..|..+....++......- +-....+-.....+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 47888889999999999999999888765 23344556666665567788899999999888764 34455566666777
Q ss_pred HhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHH
Q 036160 299 DKSGCLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375 (601)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 375 (601)
-..|+...|+.++...-+. +...|-+-+.......++++|..+|.+... ..|+...|..-+..---.++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 7889999999999887653 445677778888899999999999998876 45677777666666666788999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 036160 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452 (601)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 452 (601)
++++..+. ++.-...|..+.+.+.+.++++.|.+.|.... +..+..|-.|...--+.|+.-+|..++++.+-.+ +
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 99887765 34446678888899999999999999998766 3366688888888889999999999999998863 4
Q ss_pred CCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHH
Q 036160 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532 (601)
Q Consensus 453 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 532 (601)
-|...|...++.-.+.|+.+.|..++.+..+. .+.+...|..-+....+.++-......+++-. -|+..+-.+...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~l 826 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKL 826 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHH
Confidence 45568889999999999999999999988875 55667788877888778787777777777643 466677788888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCCCceeEEEec
Q 036160 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600 (601)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 600 (601)
+.....++.|.+.|+++++.+|++..+|..+-..+...|.-++-.+++.+... .+|.-|..|..|+
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999997754 3345566776653
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=3e-13 Score=132.24 Aligned_cols=545 Identities=11% Similarity=0.021 Sum_probs=357.0
Q ss_pred HHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCCh
Q 036160 23 LNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA 102 (601)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (601)
...+.-.|+.++|.+++.+..+.. +.+...|.+|...|-..|+.+.+...+-.+.... +.|...|..+-....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 334445599999999999999864 5567899999999999999999988777665544 44778999999999999999
Q ss_pred hHHHHHHhcCCCCCccchHH---HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH----HHHHHHhccCCcchhhHHH
Q 036160 103 DNALKVFYRIKDPDVVAWGA---IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT----SLVRATTETGDQRCGESIH 175 (601)
Q Consensus 103 ~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~ 175 (601)
+.|.-.|.+..+.+..-|-. -...|-+.|+...|.+.|.++.+...+.|..-+. .+++.+...++-+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998743333433 3456788999999999999998864322333333 3455566677778888888
Q ss_pred HHHHHH-CCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC--------------------------CCcccHH----HH
Q 036160 176 AVICKY-GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--------------------------QDSVSWN----AL 224 (601)
Q Consensus 176 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~----~l 224 (601)
+..... +-..+...++.++..+.+...++.|......... ++..+|+ .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 887763 2244567788999999999999988887765533 1111222 22
Q ss_pred HHHHhcCCCchhHHHHHHHHHHCCCCC--CHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcC
Q 036160 225 FSRFQDYESPDQGLRIFYQMLLKGFKP--NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302 (601)
Q Consensus 225 i~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 302 (601)
.-++......+....+.....+..+.| +...|.-+..++...|++..|..++..+.......+..+|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 334444555555555555556665333 456788899999999999999999999999887778889999999999999
Q ss_pred CHHHHHHHHhhCCCCCcccHH---HHHHHHHhcCChhHHHHHHHHHHH--------cCCCCCHHHHHHHHHhhcCCCchh
Q 036160 303 CLEDAGVAFDSLANKDLFAYT---AIITSYAQAGEAEMALKCFRKMRL--------EGIKSNEFTLASCLNGCSPVATLA 371 (601)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~--------~~~~p~~~~~~~ll~~~~~~~~~~ 371 (601)
..+.|.+.|+.+...++..++ .|...+.+.|+.++|.+.+..+.. .+..|+..........+...|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999998765554444 455678899999999999998642 234555555556666677777776
Q ss_pred hHHHHHHHHHHhC----------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHcCC--------CCCCHh
Q 036160 372 NGRLLHSIAVKTG----------------------HLLDMFVSTALVAMYAKCGSIDDAEAVFKGS--------ALRDTA 421 (601)
Q Consensus 372 ~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~~ 421 (601)
+-..+-..|+... .+........++.+-.+.++......-.... ..-...
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 6544444333211 0111111122222222332222221111111 001111
Q ss_pred ----HHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHh--hH-HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--
Q 036160 422 ----SWNMMIGGYVKHGLGEKALEAFRMMLDEGY--VPDEI--TF-VVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-- 490 (601)
Q Consensus 422 ----~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-- 490 (601)
.+.-++.++++.+++++|+.+...+..... .++.. .+ ...+.+.+..+++..|...++.|...++...+
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 234456677888888888888877776431 12221 22 23344566778888888888887765444333
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhh
Q 036160 491 -IKHFACMIDILGRAGKFTEIENFITE-TKLTPNA--LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566 (601)
Q Consensus 491 -~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 566 (601)
...|+.......+.|+---=.+++.. +..+|+. ......+......+.+.-|.+.+-++....|++|.+...+|.+
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 23444444455555544333444444 3334433 2222223334567778888888888888888878777777766
Q ss_pred hhh
Q 036160 567 SAT 569 (601)
Q Consensus 567 ~~~ 569 (601)
+-+
T Consensus 784 fih 786 (895)
T KOG2076|consen 784 FIH 786 (895)
T ss_pred HHH
Confidence 554
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=1.6e-12 Score=122.36 Aligned_cols=540 Identities=11% Similarity=0.051 Sum_probs=382.0
Q ss_pred CCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHH
Q 036160 29 SGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108 (601)
Q Consensus 29 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 108 (601)
-++..+|.-+++...+.+ +-++..|-+-.+.=-..|.+..|..+...--+. ++.+...|---+ +....+.|..+
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHH
Confidence 356778888888888775 334555665555555667777777666554432 233444443322 34455666666
Q ss_pred HhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchh
Q 036160 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188 (601)
Q Consensus 109 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (601)
..........+-..-+.+---..+...=.+++++..+. ++-+...| .+.....+.+.|..++...++. ++.+..
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LW----KaAVelE~~~darilL~rAvec-cp~s~d 411 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLW----KAAVELEEPEDARILLERAVEC-CPQSMD 411 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHH----HHHHhccChHHHHHHHHHHHHh-ccchHH
Confidence 65555421111122222222233344445666666665 33343334 3344555666688888877765 233444
Q ss_pred HHHHHHHHHHhcCCccHHHHHHhhcCC---CCcccHHHHHHHHhcCCCchhHHHHHHH----HHHCCCCCCHhhHHHHHH
Q 036160 189 VGNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQ----MLLKGFKPNMCTFIVILK 261 (601)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~ 261 (601)
.|. +|.+..-++.|.++++...+ .+...|.+-...--.+|+.+...+++++ +...|+..+..-|..=..
T Consensus 412 Lwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 412 LWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 444 44555667788888877655 4666676666666677888887777654 455688888888888888
Q ss_pred HhcCCCChhHHHHHHHHHHHccCCCC--cchhhHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhcCChh
Q 036160 262 ACSSLSDVGFGKQLHAHTIKHSLDGN--HVVGTSLVDMYDKSGCLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAE 336 (601)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~ 336 (601)
.|-..|..-.+..+....+..|+... ..++..-...+.+.+.++-|+.+|....+- +...|......--..|..+
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 88888999999999998888887543 457777788889999999999998887653 4456766666666788889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC
Q 036160 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416 (601)
Q Consensus 337 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 416 (601)
....+|++.... .+-....+.......-..|++..|+.++..+.+.... +..++-+-+.....+.++++|..+|.+..
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999998876 3334445555555566789999999999998887644 77888888999999999999999998655
Q ss_pred --CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhH
Q 036160 417 --LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493 (601)
Q Consensus 417 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 493 (601)
.++...|.--+...--.+..++|++++++..+. -|+.. .|..+.+.+.+.++.+.|.+.|..-.+. .+-.+..
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipL 721 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPL 721 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchH
Confidence 667778877777777788999999999998884 56654 7888888899999999999988766543 3334677
Q ss_pred HHHHHHHHHhcCChHHHHHHhHh--cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcce----------
Q 036160 494 FACMIDILGRAGKFTEIENFITE--TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNY---------- 560 (601)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~--~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---------- 560 (601)
|-.|...=.+.|.+-.|..++++ +. .| +...|-..+..-.+.|+.+.|..+..++++..|++...|
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 88888888888999999999998 44 45 788999999999999999999999999988766544333
Q ss_pred --------------------eehhhhhhhcCChhhHHHHHHHHHhcCCcCC
Q 036160 561 --------------------VFPSDISATQGRWNDFSGVRALLSSQGIKKE 591 (601)
Q Consensus 561 --------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 591 (601)
...+..+....+++.|++.|++..+.++..-
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 3366778888999999999998876555433
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=6.4e-13 Score=129.99 Aligned_cols=582 Identities=12% Similarity=0.027 Sum_probs=379.3
Q ss_pred CchHHHHhccCCC---CCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHH
Q 036160 1 MELAKRVFKSMPE---LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77 (601)
Q Consensus 1 ~~~a~~~f~~~~~---~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 77 (601)
+++|.+++.++.+ .+..+|.+|...|-..|+.+++...+-..-... +-|...|..+.......|++++|.-.|..+
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3678888887754 355689999999999999999998876665432 345678999999999999999999999999
Q ss_pred HHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCc-cch-------HHHHHHHHhcCChhHHHHHHHHHHHc-CC
Q 036160 78 IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV-VAW-------GAIITCLDQQGCCQEAAKIFNLMRES-SV 148 (601)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~-------~~li~~~~~~~~~~~a~~~~~~m~~~-~~ 148 (601)
++..++ +...+---+..|-+.|+...|..-|.++.+.+. +.| -.++..+...++-+.|++.++..... +-
T Consensus 234 I~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 997643 555555567889999999999999988876221 111 23445667777779999998887663 23
Q ss_pred CCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCC---------------------------CCchhHHHHHHHHHHhcC
Q 036160 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF---------------------------ESDTLVGNALVSMYMENG 201 (601)
Q Consensus 149 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~ 201 (601)
.-+...+++++..+.+...++.+......+..... .++..+ -.++-++.+..
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhccc
Confidence 45566788888888888888888887777766211 222222 12333344444
Q ss_pred CccHHHHHHhhcCCC------CcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHH
Q 036160 202 RVSYGSRVFEAIAHQ------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275 (601)
Q Consensus 202 ~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 275 (601)
..+....+...+... ++..|..+..++...|++++|+.+|..+.....--+...|-.+..++-..|..+.|.+.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 444444444444432 34568888999999999999999999999875555677888999999999999999999
Q ss_pred HHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCccc-----H-------HHHHHHHHhcCChhHHHHHHH
Q 036160 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA-----Y-------TAIITSYAQAGEAEMALKCFR 343 (601)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~-------~~ll~~~~~~g~~~~a~~~~~ 343 (601)
+..+.... +.+...-.+|...+.+.|+.++|.+.+..+..||... | ......+.+.|+.++=+.+..
T Consensus 472 y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 472 YEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99998764 3344455678889999999999999999987765211 1 123345667787776555554
Q ss_pred HHHHcC-----CCC-----------------CHHHHHHHHHhhcCCCchhhHHHH------HHHHHHhCCCCc--hhHHH
Q 036160 344 KMRLEG-----IKS-----------------NEFTLASCLNGCSPVATLANGRLL------HSIAVKTGHLLD--MFVST 393 (601)
Q Consensus 344 ~m~~~~-----~~p-----------------~~~~~~~ll~~~~~~~~~~~a~~~------~~~~~~~~~~~~--~~~~~ 393 (601)
.|.... +-| ...+...++.+-.+.++......- +..-..++...+ -..+.
T Consensus 551 ~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~ 630 (895)
T KOG2076|consen 551 TLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFR 630 (895)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHH
Confidence 443321 111 111222223332222221111111 111111222222 23456
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCCCC-----CHh----HHHHHHHHHHhCCChHHHHHHHHHHHHc-CC--CCCHh-hHHH
Q 036160 394 ALVAMYAKCGSIDDAEAVFKGSALR-----DTA----SWNMMIGGYVKHGLGEKALEAFRMMLDE-GY--VPDEI-TFVV 460 (601)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~--~p~~~-~~~~ 460 (601)
-++..+++.+++++|..+...+... +.. .-...+.+.+..+++..|...++.|... ++ .|... .|+.
T Consensus 631 e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~ 710 (895)
T KOG2076|consen 631 ELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNL 710 (895)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 6788899999999999988765422 221 2344566778899999999999999874 11 22222 3444
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHH-HHHH--
Q 036160 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLL-GACS-- 534 (601)
Q Consensus 461 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~-~~~~-- 534 (601)
..+.+.+.++-.--.+++..+. ..+|+ +..+...+..+...+.+.-|+..+-+ ....||....+.++ .++.
T Consensus 711 ~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 711 DFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 4455555554333333333322 22232 23333334556677888888877655 33566644444333 2221
Q ss_pred --------hcCChhHHHHHHHHHHhcCCC--CCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 535 --------WHGNIELDEKDAEKLLELEPK--MESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 535 --------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
++-..-.+..++.+..++... .-.+.+++|++|-..|-..-|..++++..+..|.
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 122345566777777776553 5568889999999999999999999988765443
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.71 E-value=1e-13 Score=134.78 Aligned_cols=561 Identities=12% Similarity=0.058 Sum_probs=292.5
Q ss_pred CCCCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCC------------------------CCCcchHHHHHHHHhccCch
Q 036160 12 PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK------------------------KFSKFSLSTVLKGFANSGYI 67 (601)
Q Consensus 12 ~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------------~~~~~~~~~ll~~~~~~~~~ 67 (601)
..||.+||..+|.-|+..|+.+.|- +|.-|.-+.. .|.+.||..|+.+|...||.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence 4688999999999999999999998 7777753322 34566777777777777766
Q ss_pred hh---hHHHHHHHH----HhcC-----------------CCChhHHhhHHHHhhcCCChhHHHHHHhcCC----------
Q 036160 68 KA---GQVVHAMAI----RLGC-----------------ALDKFLSCSLVDMYSKCGLADNALKVFYRIK---------- 113 (601)
Q Consensus 68 ~~---a~~~~~~~~----~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------- 113 (601)
.. +.+.++.+. ..|+ -||.. ..+....-.|-++.+.+++..++
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 43 222111111 1111 11111 11122222233444444332222
Q ss_pred -----------------------C-CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcc
Q 036160 114 -----------------------D-PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169 (601)
Q Consensus 114 -----------------------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 169 (601)
+ ++..+|..++..-...|+.+.|..++.+|++.|++.+.+-|-.|+-+ .++..
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 1 45556666666666666666666666677666666666655555544 55666
Q ss_pred hhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCC-----Cc-----hhHHH
Q 036160 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE-----SP-----DQGLR 239 (601)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-----~~-----~~a~~ 239 (601)
.+..++..|...|+.|+..|+...+..+..+|....+... . +....+++-...-.-.| .. .-...
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~ 328 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIG 328 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHH
Confidence 6666666666666666666666655555554332111111 1 11111111111111111 00 01111
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCC---CCcchhhHHHHHHHhc---------------
Q 036160 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD---GNHVVGTSLVDMYDKS--------------- 301 (601)
Q Consensus 240 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~--------------- 301 (601)
.+.+..-.|+......|..... ....|.-+.++++...+..-... .+...+..++.-|.+.
T Consensus 329 s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qg 407 (1088)
T KOG4318|consen 329 STKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQG 407 (1088)
T ss_pred HhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1111111232222222222222 12245444555444444322111 1111222222222211
Q ss_pred -------CCHHHHHHHHhhCCC----------------CCccc-----------HHHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 302 -------GCLEDAGVAFDSLAN----------------KDLFA-----------YTAIITSYAQAGEAEMALKCFRKMRL 347 (601)
Q Consensus 302 -------~~~~~a~~~~~~~~~----------------~~~~~-----------~~~ll~~~~~~g~~~~a~~~~~~m~~ 347 (601)
.+.....+....... +...+ -+.++..+++.-+..++...-++...
T Consensus 408 ls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~ 487 (1088)
T KOG4318|consen 408 LSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED 487 (1088)
T ss_pred HHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111121111110 01111 12344445554444555433333322
Q ss_pred cCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCC-----CC-
Q 036160 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT--GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-----RD- 419 (601)
Q Consensus 348 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~- 419 (601)
. .-| ..|..++.-++.....+.|..+.++.... .+..+...+..+.+.+.+.+...++..+++++.. ++
T Consensus 488 ~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~ 564 (1088)
T KOG4318|consen 488 L-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLV 564 (1088)
T ss_pred H-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchH
Confidence 2 112 56778888888888888888888877643 4456677788888888888888888888877652 21
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC------------------------------CCCHhhHHHHHHHh----
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGY------------------------------VPDEITFVVVLSAC---- 465 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------------------------~p~~~~~~~l~~~~---- 465 (601)
..++--+++..+..|+.+...++++-+...|+ +|.+.....+.+.+
T Consensus 565 a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~ 644 (1088)
T KOG4318|consen 565 AIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKET 644 (1088)
T ss_pred HHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhc
Confidence 22333445555666666666666655544332 23332222222222
Q ss_pred -----------------hccCcHHHHHHHHHHHHHHhCC---------------CC---------ChhHHHHHHHHHHhc
Q 036160 466 -----------------SHMGLIEEGKKHFSSIKKIYGI---------------TP---------TIKHFACMIDILGRA 504 (601)
Q Consensus 466 -----------------~~~~~~~~a~~~~~~~~~~~~~---------------~p---------~~~~~~~l~~~~~~~ 504 (601)
.+.|++.+|.++.+. .|+ .| +.....-|+..|.+.
T Consensus 645 td~~qk~mDls~~iq~f~k~g~~~~a~di~et----pG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~ 720 (1088)
T KOG4318|consen 645 TDSPQKTMDLSIPIQKFEKLGSCVDAGDITET----PGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEE 720 (1088)
T ss_pred cccHHHHHhhcchhHHHHhcccccchhhcccc----CcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhh
Confidence 222222222222110 011 00 011122367789999
Q ss_pred CChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCCc---ceeehhhhhhhcCChhhHHH
Q 036160 505 GKFTEIENFITETKLTPNALVWENLLGACSWHG---NIELDEKDAEKLLELEPKMES---NYVFPSDISATQGRWNDFSG 578 (601)
Q Consensus 505 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 578 (601)
|+++.|..+|.++.+.|++.+...+...+.+.. |..++...-+++.++.|..+. .+.-.+.+..+-...+-|.+
T Consensus 721 g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk 800 (1088)
T KOG4318|consen 721 GRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKK 800 (1088)
T ss_pred hHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHH
Confidence 999999999999998999998888888877654 778888888888887775443 33344445555556668899
Q ss_pred HHHHHHhcCCcCCC
Q 036160 579 VRALLSSQGIKKEP 592 (601)
Q Consensus 579 ~~~~~~~~~~~~~~ 592 (601)
.|.+..++.+..+.
T Consensus 801 ~f~r~eeq~~v~ta 814 (1088)
T KOG4318|consen 801 CFERLEEQLTVSTA 814 (1088)
T ss_pred HHHHHHHccCCCcH
Confidence 99999887665543
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.69 E-value=7.4e-14 Score=135.69 Aligned_cols=528 Identities=11% Similarity=0.021 Sum_probs=295.5
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCC
Q 036160 37 HLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116 (601)
Q Consensus 37 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 116 (601)
.++-.+...|+.|+.+||..+|..||..|+++.|- +|..|.-...+.....++.++.+...+++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888999999999999999999999999999 9999998888889999999999999999887766 688
Q ss_pred ccchHHHHHHHHhcCChhH---HHHHHHHHH----HcCCCCChhhHHHHHHHHhccCCcchh---------hHHHHHHHH
Q 036160 117 VVAWGAIITCLDQQGCCQE---AAKIFNLMR----ESSVKPNQFVLTSLVRATTETGDQRCG---------ESIHAVICK 180 (601)
Q Consensus 117 ~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~a---------~~~~~~~~~ 180 (601)
..+|..|..+|...||... ..+.++... ..|+.--..-+-..++++ -+-...+ +.++...++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999754 333222222 123221111121111221 1111111 123333333
Q ss_pred HCC-CCchhHHHH---HHHHHHhc-CCccHHHHHHhhcCC-CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHh
Q 036160 181 YGF-ESDTLVGNA---LVSMYMEN-GRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254 (601)
Q Consensus 181 ~~~-~~~~~~~~~---l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 254 (601)
.+. .|...-++. .++-+... ..+++-..+.+...+ +++.+|.+++.+-..+|+.+.|..++.+|++.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 331 121111111 12222221 223444444444444 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCC
Q 036160 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334 (601)
Q Consensus 255 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~ 334 (601)
-|..++-+ .++...++.++.-|...|+.|+..|+...+..+.+.|....+.+. .+....+.+-+..-+-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg- 311 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG- 311 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc-
Confidence 88888876 788889999999999999999999999888888775553322211 111122222222222223
Q ss_pred hhHHHH------------HHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCC---CCchhHHHHHHHHH
Q 036160 335 AEMALK------------CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH---LLDMFVSTALVAMY 399 (601)
Q Consensus 335 ~~~a~~------------~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~ 399 (601)
..|.+ .+.+..-.|+......|..+.. ...+|.-+...++-..+...-. ..++..+..++.-|
T Consensus 312 -~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy 389 (1088)
T KOG4318|consen 312 -LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY 389 (1088)
T ss_pred -cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH
Confidence 22222 2222222343333333333222 2224555555554444432111 11223333333333
Q ss_pred HhcCCHHHHHHHHc--CCCCC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-------CHhhHHHHHHH
Q 036160 400 AKCGSIDDAEAVFK--GSALR--DTASWNMMIGGYVKHGLGEKALEAFRMMLDE----GYVP-------DEITFVVVLSA 464 (601)
Q Consensus 400 ~~~~~~~~A~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-------~~~~~~~l~~~ 464 (601)
.+.-+..-....+. +.... +...-..+..... .-+...+.+-+..+... ...| -...-+.++..
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 32211111101000 00000 0000000111111 11222222222111110 0111 11233445555
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC-----CCCcHHHHHHHHHHHHhcCCh
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-----LTPNALVWENLLGACSWHGNI 539 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~ 539 (601)
|++.-+..++...-+..... - -| ..|..|++.+....+.++|..+.+++. +.-|...+..+.+...+.+..
T Consensus 469 l~se~n~lK~l~~~ekye~~-l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDL-L-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHH-H-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 55555555555443333222 1 11 567778888888888888888877754 222444556666777777877
Q ss_pred hHHHHHHHHHHhcC---CCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 540 ELDEKDAEKLLELE---PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 540 ~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
..+..++++..+.- |.-......+.+.....|+.+.-.++.+-+...|+.-
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 77877777776632 2223334445555556777777777777777666644
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.2e-16 Score=147.54 Aligned_cols=253 Identities=13% Similarity=0.092 Sum_probs=113.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036160 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS-CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405 (601)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (601)
..+.+.|++++|++++++......+|+...|-. +...+...++.+.|...++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 344455555666655544333322233333322 222334455566666666655554332 44455556666 677888
Q ss_pred HHHHHHHcCCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHhhccCcHHHHHHHHHHHH
Q 036160 406 DDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482 (601)
Q Consensus 406 ~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 482 (601)
++|.++++... .+++..+..++..+...++++++..+++++.... .+++...|..+...+.+.|++++|.+.+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888877654 3466677788888999999999999999987643 24456678888888999999999999999998
Q ss_pred HHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 483 KIYGITPT-IKHFACMIDILGRAGKFTEIENFITETK--LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 483 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
+. .|+ ......++..+...|+.+++.++++... .+.|+..+..++.++...|+.++|...++++.+..|+|+..
T Consensus 174 ~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 EL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred Hc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 76 564 7788899999999999999888887633 24477788899999999999999999999999999999999
Q ss_pred eeehhhhhhhcCChhhHHHHHHHHH
Q 036160 560 YVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 560 ~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
..+++.++...|+.++|.+++.++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999988764
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2e-13 Score=124.07 Aligned_cols=213 Identities=17% Similarity=0.197 Sum_probs=164.8
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHH
Q 036160 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEA 442 (601)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 442 (601)
-.|+.-.+..-++..+.....+.. .|--+..+|....+.++-...|+... +.|+.+|.--...+.-.+++++|..-
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 346666677777776665443322 25556666777777777777776443 55777777777777777899999999
Q ss_pred HHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCC
Q 036160 443 FRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLT 520 (601)
Q Consensus 443 ~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~ 520 (601)
|++.+. +.|+. ..|--+..+..+.++++++...|++.+++ ++.-++.|+....++..+++++.|.+.++. +.+.
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 46654 46777777778899999999999999987 444478899999999999999999999997 5555
Q ss_pred Cc---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 521 PN---------ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 521 p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
|+ +.+...++- +.-.+|+..|++++.++++++|....++..|+.+...+|+.++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 54 222223332 2344999999999999999999999999999999999999999999999753
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=3.9e-14 Score=127.34 Aligned_cols=258 Identities=12% Similarity=0.068 Sum_probs=187.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH--HHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036160 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC--LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404 (601)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (601)
..+.+.|+++.|+++++-+.++.-+.-...-+.+ +.-+..-.++..|.++-+...... .-+......-...-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3578999999999999988776543333222222 222223345666666666554322 1112222222233445799
Q ss_pred HHHHHHHHcCCCCCCHhHHHHHHH---HHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHH
Q 036160 405 IDDAEAVFKGSALRDTASWNMMIG---GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 405 ~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 481 (601)
+++|.+.+++....|..+-.+|.+ .+-..|+.++|+..|-++..- +..+...+..+...|....+..+|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988877766555544 466789999999999877653 3345567778888899999999999999777
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 482 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
... ++.|+...+.|.+.|-+.|+-..|.+..-+ ...-| +..+...|...|....=+++|+..++++--+.|+...-
T Consensus 585 ~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 585 NSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred ccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 653 555688999999999999999999988554 55445 88898999988998888999999999999999955444
Q ss_pred eeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 560 YVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 560 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
...++.++.+.|+++.|.++++...++=+
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 45566777789999999999999876433
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=3.3e-12 Score=123.47 Aligned_cols=286 Identities=14% Similarity=0.030 Sum_probs=180.0
Q ss_pred CCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchh--hHHHHHHHhcCCHHHHH
Q 036160 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG--TSLVDMYDKSGCLEDAG 308 (601)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~ 308 (601)
.|+++.|.+.+....+..-.| ...|.....+....|+++.+...+.++.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 456666665555443331111 122222233335566666666666666543 2332222 12345666677777777
Q ss_pred HHHhhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCC
Q 036160 309 VAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385 (601)
Q Consensus 309 ~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 385 (601)
..++.+.+. ++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 777766543 4455667777788888888888888888776543221 111000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 036160 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462 (601)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 462 (601)
...|..++.......+.+...++++.+. +.++.....+...+...|+.++|.+++++..+. .|+.... ++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 0011222222233344555566666654 346777888888888899999999998888874 4554322 23
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhH
Q 036160 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~ 541 (601)
.+....++.+++.+..+...+. .+-|+..+.+++..+.+.|++++|.+.|++ +...|+...+..+..++.+.|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444568888888888888765 233466777888888899999999999888 5577888888888888888899999
Q ss_pred HHHHHHHHHhcC
Q 036160 542 DEKDAEKLLELE 553 (601)
Q Consensus 542 A~~~~~~~~~~~ 553 (601)
|.+++++.+.+.
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 999988887754
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.6e-11 Score=111.42 Aligned_cols=393 Identities=11% Similarity=0.095 Sum_probs=275.5
Q ss_pred HhcCCccHHHHHHhhcCC---CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHH
Q 036160 198 MENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274 (601)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 274 (601)
...+++..|..+|+.... .++..|--.+..-.++.....|..++++....=...|. .+-..+..=-..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 345666777777777765 45556666777777777778888887777654222222 22233334445678888888
Q ss_pred HHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CC-
Q 036160 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA--NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GI- 350 (601)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~- 350 (601)
+|+.-.+. .|+...|.+.++.-.+-+.++.|..++++.. .|++.+|--...--.++|+...|..+|....+. |-
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 88877653 7888888888888888888888888888743 577777777777777888888888888776553 10
Q ss_pred CCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHH--------cCCC---CC
Q 036160 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVF--------KGSA---LR 418 (601)
Q Consensus 351 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~--------~~~~---~~ 418 (601)
..+...|.+...--.+...++.|.-+|+....+-.+.. ...|..+...--+-|+........ +... +-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 11122333333333456677888888887776533221 334444444334445544433332 2222 33
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh--hHHHHH-----HHh---hccCcHHHHHHHHHHHHHHhCCC
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI--TFVVVL-----SAC---SHMGLIEEGKKHFSSIKKIYGIT 488 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~-----~~~---~~~~~~~~a~~~~~~~~~~~~~~ 488 (601)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|...+ -+| ....+.+.+.++++...+. ++
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IP 397 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IP 397 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cC
Confidence 6778888888888899999999999999985 677442 222221 222 3467899999999988864 33
Q ss_pred CChhHHHHH----HHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeeh
Q 036160 489 PTIKHFACM----IDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563 (601)
Q Consensus 489 p~~~~~~~l----~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 563 (601)
-...||.-+ +....++.++..|.+++-. +|..|...++...+..-.+.++++....++++.++..|.|..+|...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 335555544 3444688899999999987 88899999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCChhhHHHHHHHHHhcCCcCCCceeE
Q 036160 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596 (601)
Q Consensus 564 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 596 (601)
+.+-..+|+++.|+.+|+...++.....|...|
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999999988766655554443
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7e-14 Score=132.28 Aligned_cols=278 Identities=15% Similarity=0.045 Sum_probs=193.4
Q ss_pred CHHHHHHHHhhCCCC--Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCCchhhHHHHH
Q 036160 303 CLEDAGVAFDSLANK--DLF-AYTAIITSYAQAGEAEMALKCFRKMRLEGI--KSNEFTLASCLNGCSPVATLANGRLLH 377 (601)
Q Consensus 303 ~~~~a~~~~~~~~~~--~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 377 (601)
+.++|...|..++.. |+. ....+..+|...+++++|.++|+.+++... .-+..+|.+.+.-+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456777777775542 332 334566788888888888888888876531 1245566666654322 1122222
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 036160 378 -SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453 (601)
Q Consensus 378 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 453 (601)
+.+.. --+..+.+|-++..+|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22222 22446778888888888888888888888876644 345677777777777788888888887765 345
Q ss_pred CHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHH
Q 036160 454 DEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENL 529 (601)
Q Consensus 454 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l 529 (601)
... .|..+...|.+.++++.|+-.|+++.+ +.|. ......++..+.+.|+.|+|++++++ ..++| |+..-..-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 443 666777788888888888888887764 4555 55666677788888888888888887 34555 66666677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
+..+...+++++|...+|++.++-|++..++..++.+|.+.|+.+.|+..|.-+.+..++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7777888888888888888888888888888888888888888888888887776655543
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=8.6e-11 Score=106.82 Aligned_cols=461 Identities=10% Similarity=0.074 Sum_probs=310.3
Q ss_pred ChhHHhhHHHHhhcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHH
Q 036160 85 DKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF-VLTSLVR 160 (601)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~ 160 (601)
+...|-....-=...+++..|.++|++... .+...|-..+..-.+...+..|..+++..... -|.+. .+.--+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 334444444434455677788888888775 45566666777777788888888888877653 34332 2333333
Q ss_pred HHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcC--CCCcccHHHHHHHHhcCCCchhHH
Q 036160 161 ATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQGL 238 (601)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~ 238 (601)
.--..|++..|.++|+.-.+- .|+...|.+.|+.-.+-+.++.|..+++... +|++.+|--....--+.|....+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 444567888888888877654 7888888888888888888888888888764 477778888788788888888888
Q ss_pred HHHHHHHHC-CC-CCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCC-CcchhhHHHHHHHhcCCHHHHHHH-----
Q 036160 239 RIFYQMLLK-GF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG-NHVVGTSLVDMYDKSGCLEDAGVA----- 310 (601)
Q Consensus 239 ~~~~~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~----- 310 (601)
.+|....+. |- ..+...|.+....=.+...++.|..++.-....-... ...+|..+...--+-|+.......
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 888777654 11 1112223333333345566777888887776653222 234555555554555654443332
Q ss_pred ---HhhCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHH---HHhhcCCCchhhHH
Q 036160 311 ---FDSLANKDL---FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF-------TLASC---LNGCSPVATLANGR 374 (601)
Q Consensus 311 ---~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~l---l~~~~~~~~~~~a~ 374 (601)
++.+...|+ .+|--.++.--..|+.+...++|++.+.. ++|-.. .|.-+ +-.-....+.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 223333344 55666677777789999999999998865 555221 12111 11123567888899
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHH----HhcCCHHHHHHHHcCCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 036160 375 LLHSIAVKTGHLLDMFVSTALVAMY----AKCGSIDDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448 (601)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 448 (601)
++++...+ -++....++.-+--+| .++.++..|.+++.... .|-..+|...|..-.+.++++.+.++|++.++
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99998888 3455556665554444 46788999999987654 67778898899988999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCCcHHHHH
Q 036160 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTPNALVWE 527 (601)
Q Consensus 449 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 527 (601)
-+ +-|..+|......-...|+.+.|..+|.-++....+......|.+.++.=...|.++.|..+++++ ...+...+|-
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWi 544 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWI 544 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHH
Confidence 53 335568887777777889999999999988765233333456667777777899999999999984 4556666776
Q ss_pred HHHHHHH-----hcC-----------ChhHHHHHHHHHHhc
Q 036160 528 NLLGACS-----WHG-----------NIELDEKDAEKLLEL 552 (601)
Q Consensus 528 ~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 552 (601)
.....-. +.| +...|..+++++...
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 6654333 334 567888888888764
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.3e-12 Score=112.74 Aligned_cols=255 Identities=12% Similarity=0.072 Sum_probs=196.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcC
Q 036160 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH--LLDMFVSTALVAMYAKCG 403 (601)
Q Consensus 326 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 403 (601)
..++....+.+++.+-.......|.+-+...-+....+.-...+++.|+.+|+++.+... -.|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555556777777777777777766655555555556677888889888888888732 125566665543322222
Q ss_pred CHH-HHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHH
Q 036160 404 SID-DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 404 ~~~-~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 481 (601)
++. -|..++ .+.+--+.|..++.+-|.-.++.++|...|++..+. .|... .|+.+.+-|....+...|++.++.+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 221 122222 222233456666777788889999999999999984 66654 6777778899999999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 482 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
++. .+.|-..|-.|+++|.-.+...-|+-+|++ ..++| |...|..|+..|.+.++.++|++++.+++....-+..+
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 864 345678999999999999999999999998 45777 88999999999999999999999999999998888899
Q ss_pred eeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 560 YVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 560 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
+..|+.+|...++.++|..++++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999987764
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=6.2e-13 Score=128.46 Aligned_cols=275 Identities=11% Similarity=0.030 Sum_probs=191.4
Q ss_pred cCCHHHHHHHHhhCCCC--Cccc-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHhhcCCCchhhHHH
Q 036160 301 SGCLEDAGVAFDSLANK--DLFA-YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA--SCLNGCSPVATLANGRL 375 (601)
Q Consensus 301 ~~~~~~a~~~~~~~~~~--~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 375 (601)
.|+++.|++.+....+. ++.. |-....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666665554332 1222 222233346677777777777777653 44433222 22445666777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC---CHh--------HHHHHHHHHHhCCChHHHHHHHH
Q 036160 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR---DTA--------SWNMMIGGYVKHGLGEKALEAFR 444 (601)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--------~~~~l~~~~~~~~~~~~A~~~~~ 444 (601)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776655 335666777788888888888888777655522 111 33334444445556677777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-c
Q 036160 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-N 522 (601)
Q Consensus 445 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~ 522 (601)
.+.+. .+.++.....+..++...|+.++|.+.+++..+. +|+.... ++.+....++.+++++.+++ ....| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76553 3456678888999999999999999999888754 5555433 23344456999999999988 44566 6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 523 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
+..+..++..|.+.|++++|.+.++++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778899999999999999999999999999954 5577899999999999999999996643
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.6e-13 Score=129.83 Aligned_cols=279 Identities=16% Similarity=0.079 Sum_probs=220.7
Q ss_pred ChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCC------CcccHHHHHHHHHhcCChhHHHHH
Q 036160 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK------DLFAYTAIITSYAQAGEAEMALKC 341 (601)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~ 341 (601)
+..+|...|..+.+. +..+..+...+..+|...+++++|.++|+.+.+. +...|.+.+-.+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 3344467788899999999999999999998763 56678777765543 334444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHh
Q 036160 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421 (601)
Q Consensus 342 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 421 (601)
+.+-.-.--+-.+.+|..+-.+|+-+++.+.|++.|++.+..+ +-...+|+.+..-+.....+|.|...|+.....|+.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 4433333345677899999999999999999999999888754 226788888888889999999999999998877777
Q ss_pred HHHH---HHHHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036160 422 SWNM---MIGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497 (601)
Q Consensus 422 ~~~~---l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 497 (601)
.||+ +...|.+.++++.|.-.|+++.+ +.|.. +....+...+.+.|+.++|+++++++... -+.|+..--..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 6665 56789999999999999999998 46654 56777778889999999999999998754 22334444556
Q ss_pred HHHHHhcCChHHHHHHhHhcC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 498 IDILGRAGKFTEIENFITETK-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
+..+...+++++|+..+++++ +.| +...+..++..|.+.|+.+.|...+--+.+++|.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 788889999999999999966 566 56788888999999999999999999999999954
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.3e-11 Score=120.01 Aligned_cols=290 Identities=13% Similarity=0.017 Sum_probs=171.6
Q ss_pred cCCCchhHHHHHHHHHHCCCCCCH-hhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHH
Q 036160 230 DYESPDQGLRIFYQMLLKGFKPNM-CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308 (601)
Q Consensus 230 ~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 308 (601)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.+..++....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 356666666666655443 2332 2223334455556666666666666654432222222233455566666666666
Q ss_pred HHHhhCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCC
Q 036160 309 VAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385 (601)
Q Consensus 309 ~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 385 (601)
..++.+.+. ++..+..+...+...|++++|.+.+..+.+.+..+. ..+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------------------
Confidence 666665542 344555666677777777777777777776653222 11110000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHcCCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhH---H
Q 036160 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL---RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF---V 459 (601)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~ 459 (601)
..+..++..-......+...+.++..+. .++..+..+...+...|++++|.+.+++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112223444455555442 47778888888899999999999999988885 4554421 1
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh---cCCCCcHHHHHHHHHHHHhc
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE---TKLTPNALVWENLLGACSWH 536 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~l~~~~~~~ 536 (601)
.........++.+.+.+.++...+...-.|+.....+++..+.+.|++++|.+.|++ ....|+...+..++..+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111223345677788888877766522222215566788888888888888888883 44678888788888888888
Q ss_pred CChhHHHHHHHHHHh
Q 036160 537 GNIELDEKDAEKLLE 551 (601)
Q Consensus 537 g~~~~A~~~~~~~~~ 551 (601)
|+.++|.+++++.+.
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888888765
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.5e-14 Score=133.49 Aligned_cols=251 Identities=16% Similarity=0.165 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Q 036160 293 SLVDMYDKSGCLEDAGVAFDSL-AN----KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367 (601)
Q Consensus 293 ~l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 367 (601)
.+...+.+.|++++|++++++. .. .|+..|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456667777788887777432 22 24455555556666778888888888888765433 44455555555 677
Q ss_pred CchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-----CCCHhHHHHHHHHHHhCCChHHHHHH
Q 036160 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-----LRDTASWNMMIGGYVKHGLGEKALEA 442 (601)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 442 (601)
+++++|..+.....+.. +++..+...+..+.+.++++++.++++... +.+...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888887776655443 455666778888889999999988887632 45777888999999999999999999
Q ss_pred HHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCC
Q 036160 443 FRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLT 520 (601)
Q Consensus 443 ~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 520 (601)
+++..+. .|+ ......++..+...|+.+++.++++...+. .+.|+..+..++.++...|+.++|+.++++. ...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999995 665 567888999999999999999999998876 3566778889999999999999999999983 345
Q ss_pred C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 521 P-NALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 521 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
| |+.....++.++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 888999999999999999999999998875
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.8e-12 Score=113.23 Aligned_cols=321 Identities=14% Similarity=0.122 Sum_probs=169.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhH--HHH
Q 036160 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF--IVI 259 (601)
Q Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~l 259 (601)
+...|...+-.....+.+.|....|+..|......-+..|.+.+.-..-..+.+.+ .... .|...|...+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~-~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILV-VGLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHH-hcCcccchHHHHHHH
Confidence 34556555555566667788888999998888776666666555433222222222 1111 1222222222 233
Q ss_pred HHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCc------ccHHHHHHHHHhcC
Q 036160 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL------FAYTAIITSYAQAG 333 (601)
Q Consensus 260 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~ll~~~~~~g 333 (601)
..++......+++.+-.+.....|++.+...-+....+.....++++|+.+|+++.+.|+ .+|+.++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 445555567777777777777777777776666666677777788888888888776433 44554442 2222
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 036160 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413 (601)
Q Consensus 334 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 413 (601)
+. .+..+.+-...--+-.+.|...+.+-++-.++.++|..+|+...+.+.. ....|+.+.+-|....+...|.+-++
T Consensus 312 ~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1122211111111122234444444455555556666666655554321 33444555555555555555555554
Q ss_pred CCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 036160 414 GSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489 (601)
Q Consensus 414 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 489 (601)
... +.|-..|-.|.++|.-.+.+.-|+-.|++..+. +|+ +..|..|..+|.+.++.++|++.|...... | ..
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dt 464 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DT 464 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-cc
Confidence 332 334455555555555555555555555555552 332 335555555555555555555555555443 1 22
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 490 TIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 490 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
+...+..|++.|.+.++.++|...+++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334455555555555555555555543
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=3e-11 Score=107.78 Aligned_cols=287 Identities=15% Similarity=0.101 Sum_probs=211.0
Q ss_pred CCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHH
Q 036160 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310 (601)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 310 (601)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++.+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777777665554332 3345555566667788888888888777765566666667777778888888888777
Q ss_pred HhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCC
Q 036160 311 FDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387 (601)
Q Consensus 311 ~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 387 (601)
++++.+ .++........+|.+.|++.....++.+|.+.|.-.++..-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 766543 466777888889999999999999999998888654432210 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 464 (601)
...+|..+++-....+..+.-...++..+ ..++..-.+++.-+...|+.++|.++..+..+.+..|+ ....-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 12233444444444444444455666555 44677777888889999999999999999999887776 222335
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhHHH
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELDE 543 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~ 543 (601)
+.+.++...-++..+.-.+.++.. +..+.+|+..|.+.+.|.+|.+.|+. +...|+...|+.+..++.+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 667888888888888777663433 57889999999999999999999997 678999999999999999999999999
Q ss_pred HHHHHHHhc
Q 036160 544 KDAEKLLEL 552 (601)
Q Consensus 544 ~~~~~~~~~ 552 (601)
++.++++-+
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 999998854
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=1.9e-12 Score=125.88 Aligned_cols=280 Identities=10% Similarity=0.010 Sum_probs=204.9
Q ss_pred HHhcCCHHHHHHHHhhCCCC--Cc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHH
Q 036160 298 YDKSGCLEDAGVAFDSLANK--DL-FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374 (601)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~--~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 374 (601)
....|+++.|.+.+.+..+. ++ ..+-....+..+.|+++.|.+.+.+..+....+....-......+...|+++.|.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 35679999999999887653 22 2234445677788999999999999876532222223333467778899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCC---CCHhHHHH----HHHHHHhCCChHHHHHHHHHHH
Q 036160 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL---RDTASWNM----MIGGYVKHGLGEKALEAFRMML 447 (601)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~ 447 (601)
..++.+.+.. +-++.+...+...+.+.|++++|.++++...+ .+...+.. ...+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999886 33567888999999999999999999887662 34433421 1222233344455556777777
Q ss_pred HcCCCC-----CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhH---HHHHHHHHHhcCChHHHHHHhHh-cC
Q 036160 448 DEGYVP-----DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH---FACMIDILGRAGKFTEIENFITE-TK 518 (601)
Q Consensus 448 ~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~-~~ 518 (601)
+. .| +...+..+...+...|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++ +.
T Consensus 253 ~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 253 KN--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HH--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 65 34 6677888889999999999999999999875 444331 11112222345778888888887 44
Q ss_pred CCC-cH--HHHHHHHHHHHhcCChhHHHHHHH--HHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 519 LTP-NA--LVWENLLGACSWHGNIELDEKDAE--KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 519 ~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
..| |+ .....+++.|.+.|++++|.+.++ .+++..|++.. +.+++.++...|+.++|.++|++..
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566 55 677899999999999999999999 57788895544 6699999999999999999999754
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=8.1e-09 Score=97.90 Aligned_cols=522 Identities=12% Similarity=0.136 Sum_probs=307.0
Q ss_pred chHHHHHHHHhccCchhhhHHHHHHHHHh-cCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhc
Q 036160 52 FSLSTVLKGFANSGYIKAGQVVHAMAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130 (601)
Q Consensus 52 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 130 (601)
..|-..++.+..+|++......|+..+.. .+..-...|...+.-....+-++-+..++++...-++..-+-.|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34556666666777777777777766653 22223456666666666677777888888887775656677778888888
Q ss_pred CChhHHHHHHHHHHHcC------CCCChhhHHHHHHHHhccCCcchh---hHHHHHHHHHCCCCc--hhHHHHHHHHHHh
Q 036160 131 GCCQEAAKIFNLMRESS------VKPNQFVLTSLVRATTETGDQRCG---ESIHAVICKYGFESD--TLVGNALVSMYME 199 (601)
Q Consensus 131 ~~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 199 (601)
+++++|.+.+....... .+.+...|..+-...++..+.-.- ..++..+... -+| ...|.+|.+-|++
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIR 260 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHH
Confidence 88888888777764321 233444555555555554443322 2233332222 233 3578888899999
Q ss_pred cCCccHHHHHHhhcCCC--CcccHHHHHHHHhc----------------CCC------chhHHHHHHHHHHCCC------
Q 036160 200 NGRVSYGSRVFEAIAHQ--DSVSWNALFSRFQD----------------YES------PDQGLRIFYQMLLKGF------ 249 (601)
Q Consensus 200 ~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~----------------~~~------~~~a~~~~~~m~~~g~------ 249 (601)
.|.+++|..+|++.... .+.-++.+.++|+. .++ ++-.+.-|+.+...+.
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 99999999998877652 22223333333321 111 2223333444443320
Q ss_pred -----CCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccC-----CCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 036160 250 -----KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-----DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319 (601)
Q Consensus 250 -----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 319 (601)
+-+..++..-. -...|+..+....+.++.+.-- ..-...|..+...|-..|+++.|+.+|++..+-+-
T Consensus 341 lLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 11122222111 2234556666677777765421 11224678889999999999999999999877543
Q ss_pred cc-------HHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CCC------CHHHHHHHHHhhcCCCchhhHHH
Q 036160 320 FA-------YTAIITSYAQAGEAEMALKCFRKMRLEG-----------IKS------NEFTLASCLNGCSPVATLANGRL 375 (601)
Q Consensus 320 ~~-------~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----------~~p------~~~~~~~ll~~~~~~~~~~~a~~ 375 (601)
.+ |......-.+..+++.|+++.++....- .++ +...|...+..-...|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 33 4444444456778888988887654321 111 12233444444455677888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC----CCCH-hHHHHHHHHHHh---CCChHHHHHHHHHHH
Q 036160 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA----LRDT-ASWNMMIGGYVK---HGLGEKALEAFRMML 447 (601)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~ 447 (601)
+++.+.+..+.....+.| ....+....-++++.+++++.. .|++ ..|+..+.-+.+ ....+.|..+|++..
T Consensus 499 vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999998877653332222 2233455667899999999876 3443 378887766654 236899999999999
Q ss_pred HcCCCCCHhhHHHHH--HHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc
Q 036160 448 DEGYVPDEITFVVVL--SACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITE-TKLTPN 522 (601)
Q Consensus 448 ~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~ 522 (601)
+ |.+|...-+-.|+ .--.+-|-...|++++++... ++++. ..+|+..+.-....=-+..-..++++ +..-||
T Consensus 578 ~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~ 654 (835)
T KOG2047|consen 578 D-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPD 654 (835)
T ss_pred h-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCCh
Confidence 9 6777665333333 222345788889999998755 34444 44566555332211111222333333 222344
Q ss_pred HHHHHHHH---HHHHhcCChhHHHHHHHHHHhcC-CC-CCcceeehhhhhhhcCChhhHHHHHH
Q 036160 523 ALVWENLL---GACSWHGNIELDEKDAEKLLELE-PK-MESNYVFPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 523 ~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 581 (601)
...-...+ ..-.+.|..+.|..++...-++- |. ++..|...-..-.+.|+-+--++.++
T Consensus 655 ~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 655 SKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 43333222 23356778888888887777753 43 55566666666677777555444443
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.1e-10 Score=106.54 Aligned_cols=400 Identities=11% Similarity=0.008 Sum_probs=248.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCc-hhHHHHHHHHHHhc
Q 036160 123 IITCLDQQGCCQEAAKIFNLMRESSVKPN-QFVLTSLVRATTETGDQRCGESIHAVICKYGFESD-TLVGNALVSMYMEN 200 (601)
Q Consensus 123 li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 200 (601)
.-.-|.+.|.+++|++.|.+..+. .|| +..|.....+|...|+|+.+.+--...++. .|+ +..+..-..++-..
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 344566778888888888887764 677 666777777777888888777666665554 333 34566666677777
Q ss_pred CCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCc--------hhHHHHHHHHHH-CC--CCCCHhhHHHHHHHhcCCCCh
Q 036160 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP--------DQGLRIFYQMLL-KG--FKPNMCTFIVILKACSSLSDV 269 (601)
Q Consensus 201 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~g--~~p~~~t~~~ll~~~~~~~~~ 269 (601)
|++++|+.=.. -.++...+....-. ..|..-..+-.. .+ +-|+.....+....+...-.
T Consensus 197 g~~~eal~D~t---------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~- 266 (606)
T KOG0547|consen 197 GKFDEALFDVT---------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK- 266 (606)
T ss_pred ccHHHHHHhhh---------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc-
Confidence 77776653221 11111111111111 112222222222 22 34555555555444422100
Q ss_pred hHHHHHHHHHHHccCCCCcchhhHHHHHHHh--cC---CHHHHHHHHhhC-------CCC---Cccc-H-----HHHHHH
Q 036160 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK--SG---CLEDAGVAFDSL-------ANK---DLFA-Y-----TAIITS 328 (601)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~-------~~~---~~~~-~-----~~ll~~ 328 (601)
.....+.......+...+.. .+ .+..|...+.+- ... |... | .....-
T Consensus 267 -----------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 267 -----------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred -----------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 00000000011111111100 01 112222111110 000 1111 1 111112
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036160 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408 (601)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (601)
+.-.|+.-.|..-|+..+.....++.. |..+...+....+.++....|+...+.+.. ++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 334688899999999998876554443 666777788999999999999998887643 566677777777888899999
Q ss_pred HHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHh
Q 036160 409 EAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485 (601)
Q Consensus 409 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 485 (601)
..-|++.. +.++..|-.+.-+..+.++++++...|++.+++ ++.-+..|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 99998765 335666777777777889999999999999986 5555679999999999999999999999998864
Q ss_pred CCCCC---------hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 486 GITPT---------IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 486 ~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
.|+ +.+-.+++..- =.+++..|..++.+ +.+.| ....+..++..-.+.|+.++|+++|++...+.-
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred --ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 343 11222222222 23789999999998 66778 677899999999999999999999999987644
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.6e-11 Score=111.88 Aligned_cols=267 Identities=15% Similarity=0.058 Sum_probs=119.1
Q ss_pred CcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 036160 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF---AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363 (601)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 363 (601)
+..+...-.+-+...+++.+..++++.+.+.|++ .+-.-|.++...|+..+-..+=.+|.+. .+-.+.+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3333444445555566666666666666554332 3334455566666666666555566554 23334444444444
Q ss_pred hcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHH
Q 036160 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKAL 440 (601)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 440 (601)
|...|...+|+++|......+.. -...|-.+...|.-.+.-|.|...+.... +.....+--+..-|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 44445555555555544432211 12233344444444444444443332111 111111111222344444555555
Q ss_pred HHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCCC----ChhHHHHHHHHHHhcCChHHHHHHh
Q 036160 441 EAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIY-GITP----TIKHFACMIDILGRAGKFTEIENFI 514 (601)
Q Consensus 441 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 514 (601)
+.|.+... +-|+ +..++-+.-.....+.+.+|...|+...... .+.+ -..+++.|+.+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 55544443 2232 2334444333444445555555554443110 0000 1223444455555555555555555
Q ss_pred Hh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 515 TE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 515 ~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
++ +...| |..++..++..|...|+++.|++.+.+++.+.|+|.
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 54 22223 444555555555555555555555555555555443
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=4.9e-11 Score=104.31 Aligned_cols=448 Identities=12% Similarity=0.068 Sum_probs=212.5
Q ss_pred hccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHH
Q 036160 62 ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAK 138 (601)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 138 (601)
...+++..|..+++.-...+-+....+---+..++.+.|++++|...+..+.+ ++...+-.|.-++.-.|.+.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34445555555555443322211112222233444455666666665554432 444444444444444555555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCC--
Q 036160 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-- 216 (601)
Q Consensus 139 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 216 (601)
+-... +.++-.-..+++..-+.++-++...+.+.+.+. ..--.+|....-..-.+.+|++++.++...
T Consensus 113 ~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 113 IAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 43322 112222333334444555544444444443322 112223333333334566777777766553
Q ss_pred CcccHHH-HHHHHhcCCCchhHHHHHHHHHHCCCCCCH-hhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHH
Q 036160 217 DSVSWNA-LFSRFQDYESPDQGLRIFYQMLLKGFKPNM-CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294 (601)
Q Consensus 217 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (601)
+-...|. +.-+|.+..-++-+.++++--... .||+ ...+.......+.=+-..+++-...+...+-.. -..
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f 255 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPF 255 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chh
Confidence 2333343 334566666677777776666554 3332 222222222222211122222222222221111 112
Q ss_pred HHHHHhc-----CCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhh-----
Q 036160 295 VDMYDKS-----GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC----- 364 (601)
Q Consensus 295 ~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----- 364 (601)
+.-+++. .+-+.|++++-.+.+.=+.+--.++--|.++++..+|..+.+++.- ..|-....-.+..+.
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhc
Confidence 2222222 2334455554443332222222333345667777777766665421 122222222222111
Q ss_pred cCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHH
Q 036160 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444 (601)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 444 (601)
.....+.-|.+.|+..-+++...| ++.--.++...+.-..++++++-+++
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecD------------------------------TIpGRQsmAs~fFL~~qFddVl~Yln 383 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECD------------------------------TIPGRQSMASYFFLSFQFDDVLTYLN 383 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccc------------------------------cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 111112223333333222222211 12223334444444556777777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHhHhcCCCCcH
Q 036160 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF-ACMIDILGRAGKFTEIENFITETKLTPNA 523 (601)
Q Consensus 445 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 523 (601)
....- +..|...-..+.++++..|++.+|.++|-.+... .++ |..+| ..|.++|.+.|+++-|++++-++.-+.+.
T Consensus 384 Si~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~ 460 (557)
T KOG3785|consen 384 SIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSER 460 (557)
T ss_pred HHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhH
Confidence 66654 3333333345677888888888888888666432 222 33344 44567888888888888888887622233
Q ss_pred H-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceee
Q 036160 524 L-VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562 (601)
Q Consensus 524 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 562 (601)
- .+..+.+-|.+.+.+=-|-+.+..+..++| +|..|..
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWeG 499 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWEG 499 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccCC
Confidence 3 334445678888888888888888888888 6666664
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=3.2e-12 Score=115.59 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=165.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 464 (601)
....+..+...+...|++++|.+.+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35667778888999999999999988654 3456788888999999999999999999998863 3345677788888
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHH
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELD 542 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A 542 (601)
+...|++++|.+.++..............+..+..++...|++++|...+++ +...| +...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999986422223356777889999999999999999998 44455 567888899999999999999
Q ss_pred HHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 543 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
...++++++..|.++..+..++.++...|+.++|..+++.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888888999999999999999999887653
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=2.5e-09 Score=103.60 Aligned_cols=399 Identities=13% Similarity=0.075 Sum_probs=261.1
Q ss_pred HCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC---CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHh-hH
Q 036160 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC-TF 256 (601)
Q Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~ 256 (601)
..+.-|..+|..|.-+..++|+++.+.+.|++... .....|+.+...+...|....|+.+++.-....-.|+.. .+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34566888999999999999999999999998865 345578899999999999999999998876554335433 34
Q ss_pred HHHHHHhc-CCCChhHHHHHHHHHHHc--c--CCCCcchhhHHHHHHHhc-----------CCHHHHHHHHhhCCCC---
Q 036160 257 IVILKACS-SLSDVGFGKQLHAHTIKH--S--LDGNHVVGTSLVDMYDKS-----------GCLEDAGVAFDSLANK--- 317 (601)
Q Consensus 257 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~--- 317 (601)
-..-..|. +.+..+++..+-..+... + -...+..|..+.-+|... ....++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 566677777776666652 1 122233444444444322 1234456666666443
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHH-hCCCCchhHHHHHH
Q 036160 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK-TGHLLDMFVSTALV 396 (601)
Q Consensus 318 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 396 (601)
|+...--+.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|+.+.+.... .|..... ...-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--MDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--chhhh
Confidence 33333333445777889999999999999887777888888888888899999999998876654 3321110 00011
Q ss_pred HHHHhcCCHHHHHHH-------Hc-------------------CCC----CC--CHhHHHHHHHHHHhCCChHHHHHHHH
Q 036160 397 AMYAKCGSIDDAEAV-------FK-------------------GSA----LR--DTASWNMMIGGYVKHGLGEKALEAFR 444 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~-------~~-------------------~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 444 (601)
+.-..-++.+++... |+ .+. ++ .+.++..+.......+ ..+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc
Confidence 111112333333222 11 111 11 1122222221111111 00000000
Q ss_pred HHHHcCCCCCHh--------hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 445 MMLDEGYVPDEI--------TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 445 ~m~~~~~~p~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
+...-..|... .|......+.+.+..++|...+.+..+. .+-....|...+..+...|++++|.+.|..
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111223221 2445556778888899998888777653 233467788888899999999999999887
Q ss_pred -cCCCC-cHHHHHHHHHHHHhcCChhHHHH--HHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 517 -TKLTP-NALVWENLLGACSWHGNIELDEK--DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 517 -~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
+.+.| ++.+...++..+.+.|+...|.. ++..+++++|.|+..|+.+|.+...+|+.++|.+.|....+.
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 56788 67889999999999998888888 999999999999999999999999999999999999977653
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.7e-10 Score=97.21 Aligned_cols=286 Identities=14% Similarity=0.142 Sum_probs=181.3
Q ss_pred CCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCC---cchhhHHHHHHHhcCCHHHH
Q 036160 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN---HVVGTSLVDMYDKSGCLEDA 307 (601)
Q Consensus 231 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 307 (601)
+.++++|.++|-+|.+.. +.+..+--++.+.|-+.|..+.|++++..+.++.--+. ......|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455677777777776531 12223334555566666667777666666655421111 11223456667777778888
Q ss_pred HHHHhhCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhC
Q 036160 308 GVAFDSLANKDL---FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384 (601)
Q Consensus 308 ~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 384 (601)
+.+|..+.+.+. .....++..|....+|++|+++-.++.+.+-.+...-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 888777766433 34556677777888888888887777776544433211
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 036160 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461 (601)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 461 (601)
...|--|...+....+++.|..++++..+. ++..--.+.+.+...|++++|.+.|+...+.+..--+.+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 111223444444556677777777765533 3333444667788899999999999999886433333577888
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhc---C
Q 036160 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWH---G 537 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~---g 537 (601)
..+|.+.|+.++....+..+.+. .+....-..+.+.-....-.+.|..++.+ +.-+|+...+..++..-... |
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccccc
Confidence 89999999999999999888765 45555555566655555556777777655 66789988888888765433 3
Q ss_pred ChhHHHHHHHHHHh
Q 036160 538 NIELDEKDAEKLLE 551 (601)
Q Consensus 538 ~~~~A~~~~~~~~~ 551 (601)
...+....++.++.
T Consensus 333 ~~k~sL~~lr~mvg 346 (389)
T COG2956 333 RAKESLDLLRDMVG 346 (389)
T ss_pred chhhhHHHHHHHHH
Confidence 45555555555553
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=4.1e-10 Score=100.71 Aligned_cols=288 Identities=12% Similarity=0.049 Sum_probs=186.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHH
Q 036160 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209 (601)
Q Consensus 130 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (601)
.|+|.+|+++..+-.+.+-.| ...|..-.++.-..|+.+.+-+++.+..+.--.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577888888877766664322 3345555666677788888888888777764355666777777777888888877777
Q ss_pred HhhcCC---CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCC
Q 036160 210 FEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286 (601)
Q Consensus 210 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 286 (601)
.+++.+ .++........+|.+.|++.....++..|.+.|.-.|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 666544 4566777778888888888888888888888876544322100
Q ss_pred CcchhhHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 036160 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363 (601)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 363 (601)
...++..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+++..|+..++ -.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----IP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----Hh
Confidence 011223333333334444444455555553 35666677788888999999999999998888777763222 23
Q ss_pred hcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHH
Q 036160 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443 (601)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 443 (601)
+.+.++...-.+..+...+. .+.++..+.+|...|.+++.+.+|...|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~--------------------------------h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQ--------------------------------HPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred hcCCCCchHHHHHHHHHHHh--------------------------------CCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444443333332222221 1234456666777777777777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 444 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
+...+ ..|+..+|+.+.+++.+.|+..+|.+..++....
T Consensus 352 eaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 352 EAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 76666 4677777888888888888887777777766543
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3e-09 Score=95.39 Aligned_cols=304 Identities=10% Similarity=-0.025 Sum_probs=214.9
Q ss_pred CCCHhhHHHHHHHh--cCCCChhHHHHHHHHHHH-ccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHH--
Q 036160 250 KPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA-- 324 (601)
Q Consensus 250 ~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 324 (601)
.|...+....+.++ +..++...+...+-.+.. ..++.+......+...+...|+..+|...|++...-|+.+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 44444544445443 334444444444444433 3467788888999999999999999999999877655544322
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036160 325 -IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403 (601)
Q Consensus 325 -ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (601)
..-.+.+.|+.++...+...+....- -....|-.-........+++.|..+-+..++... -+...+-.-...+...+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhcc
Confidence 23345678888888888777765421 1122222222233456677777777777766542 23444444456677889
Q ss_pred CHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHH-HHhh-ccCcHHHHHHHH
Q 036160 404 SIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL-SACS-HMGLIEEGKKHF 478 (601)
Q Consensus 404 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~ 478 (601)
+.++|.-.|+... +-+..+|.-|+.+|...|++.+|.-+-++.... ++.+..+...+. ..|. ...--++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999988887543 447889999999999999999999888777664 444555665552 3333 333457899998
Q ss_pred HHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 479 SSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 479 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
++.. .+.|+ ......+...+...|+.++++.++++ +...||....+.|+..+...+.+.+|...|..++.++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8765 45787 66788889999999999999999998 6678999999999999999999999999999999999977
Q ss_pred Ccc
Q 036160 557 ESN 559 (601)
Q Consensus 557 ~~~ 559 (601)
..+
T Consensus 505 ~~s 507 (564)
T KOG1174|consen 505 KRT 507 (564)
T ss_pred hHH
Confidence 443
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=2.2e-07 Score=88.45 Aligned_cols=512 Identities=10% Similarity=0.072 Sum_probs=291.3
Q ss_pred cHHHHHHHHhhCCChhhHHHHHHhhhhc-CCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHh
Q 036160 18 SWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMY 96 (601)
Q Consensus 18 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (601)
.|-..+..+.++|++......|+..+.. .+......|.-.++-....+-++.+..+++..++. ++..-+-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4666667777777777777777776543 12223446777777777777777777777777653 223355566777
Q ss_pred hcCCChhHHHHHHhcCCCC----------CccchHHHHHHHHhcCChhH---HHHHHHHHHHcCCCCCh--hhHHHHHHH
Q 036160 97 SKCGLADNALKVFYRIKDP----------DVVAWGAIITCLDQQGCCQE---AAKIFNLMRESSVKPNQ--FVLTSLVRA 161 (601)
Q Consensus 97 ~~~~~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p~~--~~~~~ll~~ 161 (601)
++.+++++|-+.+..+... +-..|..+-...++.-+.-. ...+++.+.. .-+|. ..+.+|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence 7777777777777666531 22234444443333322211 1122222221 12332 235556666
Q ss_pred HhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhc----------------C------CccHHHHHHhhcCCC---
Q 036160 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN----------------G------RVSYGSRVFEAIAHQ--- 216 (601)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~--- 216 (601)
|.+.|.++.|..++++..+.- .+..-|..+.+.|... + +++-...-|+.+...
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 666666666666666555441 1222222222222211 1 112222233333221
Q ss_pred ------------CcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCC------HhhHHHHHHHhcCCCChhHHHHHHHH
Q 036160 217 ------------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN------MCTFIVILKACSSLSDVGFGKQLHAH 278 (601)
Q Consensus 217 ------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~ 278 (601)
++..|..- .-+..|+..+-...+.+.... +.|. ...|..+.+.|-..|+++.|..+|+.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12222222 223356667777777777654 2222 23456677788889999999999998
Q ss_pred HHHccCCCC---cchhhHHHHHHHhcCCHHHHHHHHhhCCC-C--------------------CcccHHHHHHHHHhcCC
Q 036160 279 TIKHSLDGN---HVVGTSLVDMYDKSGCLEDAGVAFDSLAN-K--------------------DLFAYTAIITSYAQAGE 334 (601)
Q Consensus 279 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--------------------~~~~~~~ll~~~~~~g~ 334 (601)
..+...+.- ..+|..-..+-.+..+++.|.++.+.... | +...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 887654332 34555555666677788888888776431 1 22346666666666788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHh---cCCHHHHHH
Q 036160 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAK---CGSIDDAEA 410 (601)
Q Consensus 335 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~A~~ 410 (601)
++....+++++.+..+.......|-. .-+....-++++.++++.-+..-..|. ...|+..+.-+.+ ..+++.|..
T Consensus 493 festk~vYdriidLriaTPqii~NyA-mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYA-MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888899999887654333322211 122334445666666654443322232 3455554444433 346899999
Q ss_pred HHcCCCCCCHh-----HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHhhccCcHHHHHHHHHHHHH
Q 036160 411 VFKGSALRDTA-----SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE--ITFVVVLSACSHMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 411 ~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 483 (601)
+|++.....+. .|-.....--+.|-...|+.++++.... +++.. ..|+..|.--...=-+.....+|++.++
T Consensus 572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 572 LFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 99876522111 1222222223467788899999997764 56554 3688877644443345566778888776
Q ss_pred HhCCCCChh---HHHHHHHHHHhcCChHHHHHHhHhcC--CCC--cHHHHHHHHHHHHhcCChhHHHHH
Q 036160 484 IYGITPTIK---HFACMIDILGRAGKFTEIENFITETK--LTP--NALVWENLLGACSWHGNIELDEKD 545 (601)
Q Consensus 484 ~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 545 (601)
. -|+.. +.--..+.=.+.|..+.|..++.--. .+| +...|...-.--.++||-+.-.++
T Consensus 651 ~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 651 S---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred h---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 5 45533 33345566678999999999987522 366 677888888878899995443333
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=3e-08 Score=96.31 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 036160 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMID 499 (601)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 499 (601)
..|......+.+.+..++|...+.+.... .+-....|......+...|.+.+|.+.|..... +.|+ +....+++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 35667778888999999999888888874 233345677777788899999999999987764 5777 778999999
Q ss_pred HHHhcCChHHHHH--HhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 500 ILGRAGKFTEIEN--FITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 500 ~~~~~g~~~~A~~--~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
++.+.|+..-|.. ++.. +.+.| +...|..++..+.+.|+.+.|-++|..+.++++.+|.-
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 9999998766655 7766 55777 78999999999999999999999999999999987763
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.7e-09 Score=98.84 Aligned_cols=277 Identities=16% Similarity=0.052 Sum_probs=178.2
Q ss_pred CcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHH
Q 036160 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296 (601)
Q Consensus 217 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 296 (601)
++.....-...+...+++.+..++++...+.. ++....+..=|.++...|+...-..+-..+.+. .+..+.+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44444555566677778888888888777662 334444444455666666655555554445443 2556677788888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhH
Q 036160 297 MYDKSGCLEDAGVAFDSLANKD---LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373 (601)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 373 (601)
.|...|+..+|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+.- |..+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~h------------------ 380 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCH------------------ 380 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCc------------------
Confidence 8888888888888888765433 3568888888888888888888887654421 1000
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc-
Q 036160 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE- 449 (601)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~- 449 (601)
.| . -.+.--|.+.++++.|.++|.+.. +.|+...+-+.-.....+.+.+|..+|+.....
T Consensus 381 ------------lP--~--LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 381 ------------LP--S--LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred ------------ch--H--HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 00 0 112223445555566666555332 445556666655555666777777777666521
Q ss_pred -CCC---C-CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH
Q 036160 450 -GYV---P-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNA 523 (601)
Q Consensus 450 -~~~---p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~ 523 (601)
.+. + -..+++.|..+|.+.+.+++|+..+++.... .+.+..++.+++..|...|+++.|.+.|.+ +.+.||.
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 011 1 2246777888888888888888888888764 456688888888888888888888888887 6678876
Q ss_pred HHHHHHHHHH
Q 036160 524 LVWENLLGAC 533 (601)
Q Consensus 524 ~~~~~l~~~~ 533 (601)
.+-..++..+
T Consensus 523 ~~~~~lL~~a 532 (611)
T KOG1173|consen 523 IFISELLKLA 532 (611)
T ss_pred HHHHHHHHHH
Confidence 6555555433
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=4.3e-10 Score=97.43 Aligned_cols=287 Identities=12% Similarity=0.089 Sum_probs=178.7
Q ss_pred CCHHHHHHHHhhCCCCCcccHH---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHhhcCCCchhhHHH
Q 036160 302 GCLEDAGVAFDSLANKDLFAYT---AIITSYAQAGEAEMALKCFRKMRLEGIKSNE---FTLASCLNGCSPVATLANGRL 375 (601)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~ 375 (601)
.+.++|...|-+|.+.|+.++. ++.+.|-+.|..|+|+++-+.+.++---+.. ...-.+..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444444333332 3344444555555555555544432100000 011122333444555555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCC--------HhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 036160 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD--------TASWNMMIGGYVKHGLGEKALEAFRMML 447 (601)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 447 (601)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+-+ ...|.-|...+....+.+.|...+.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555554422 1123344567777777778887777665443221 2235556666777889999999999998
Q ss_pred HcCCCCCHhhHH-HHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH
Q 036160 448 DEGYVPDEITFV-VVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITE-TKLTPNA 523 (601)
Q Consensus 448 ~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~ 523 (601)
+. .|+.+--+ .+.+.....|+++.|.+.|+.+.+. .|+ ..+...|..+|...|+.++...++.+ +...+..
T Consensus 208 qa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 208 QA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred hh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 85 56655333 4556788999999999999999876 455 67888899999999999999999988 4456666
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh--hcCChhhHHHHHHHHHhcCCcCCCce
Q 036160 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA--TQGRWNDFSGVRALLSSQGIKKEPSC 594 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~ 594 (601)
..-..+...-....-.+.|...+.+-+...|..-..+..+..-.. ..|++.+....+..|....++..|.+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 665566655555555677888888888889954333333332232 35678889999999988777777643
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=3.2e-11 Score=99.49 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=138.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDI 500 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 500 (601)
...|.-+|...|++..|.+-+++.++. .|+.. ++..+...|.+.|..+.|.+.|++..+. .|+ ..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhHH
Confidence 445677889999999999999999985 67654 8888888999999999999999988764 555 7788999999
Q ss_pred HHhcCChHHHHHHhHhcCCCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhH
Q 036160 501 LGRAGKFTEIENFITETKLTP----NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDF 576 (601)
Q Consensus 501 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 576 (601)
+|..|++++|...|++....| -..+|..++.+..+.|+.+.|+..+++.++.+|+++.+...++......|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999844345 3578888998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 036160 577 SGVRALLSSQGI 588 (601)
Q Consensus 577 ~~~~~~~~~~~~ 588 (601)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998876665
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=3.7e-10 Score=108.57 Aligned_cols=230 Identities=20% Similarity=0.188 Sum_probs=170.0
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHcCCC--------CC-
Q 036160 355 FTLASCLNGCSPVATLANGRLLHSIAVKT-----GH-LLDMF-VSTALVAMYAKCGSIDDAEAVFKGSA--------LR- 418 (601)
Q Consensus 355 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~- 418 (601)
.+...+...|...|+++.|...++...+. |. .|... ..+.+...|...+++++|..+|+++. ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777778888888888877776654 21 12222 22346778888899999888887543 11
Q ss_pred --CHhHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCC-CCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhC--C
Q 036160 419 --DTASWNMMIGGYVKHGLGEKALEAFRMMLD-----EGY-VPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYG--I 487 (601)
Q Consensus 419 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 487 (601)
-..+++.|..+|.+.|++++|...+++..+ .|. .|... .++.+...|+..+++++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234677788889999999998888877654 121 22222 466777788999999999999998766533 2
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHhHhc--------C-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 036160 488 TPT----IKHFACMIDILGRAGKFTEIENFITET--------K-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLEL- 552 (601)
Q Consensus 488 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 552 (601)
.++ ..+++.|...|...|++++|.+++++. + ..+ ....++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 457999999999999999999999872 1 233 3567889999999999999999999998764
Q ss_pred ---C---CCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 553 ---E---PKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 553 ---~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
. |+-..+|.+|+.+|...|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 4445577889999999999999999998886
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=2.3e-12 Score=82.68 Aligned_cols=50 Identities=26% Similarity=0.560 Sum_probs=43.3
Q ss_pred CCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhc
Q 036160 14 LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63 (601)
Q Consensus 14 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 63 (601)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888864
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.4e-11 Score=103.48 Aligned_cols=226 Identities=13% Similarity=0.027 Sum_probs=174.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036160 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402 (601)
Q Consensus 323 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (601)
+.+.++|.+.|.+.+|.+-|+.-.+. .|-+.+|-.|.+.|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-------------------------------------~~~~dTfllLskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-------------------------------------FPHPDTFLLLSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-------------------------------------CCchhHHHHHHHHHHHh
Confidence 34556666666666666666665554 22334445566777788
Q ss_pred CCHHHHHHHHcCCC--CC-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHH
Q 036160 403 GSIDDAEAVFKGSA--LR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479 (601)
Q Consensus 403 ~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 479 (601)
.+++.|..++.+.. .| |+....-+.+.+-..++.++|.++|+...+.. +.+......+...|.-.++++-|..+++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHH
Confidence 88888888887765 33 44344456777888889999999999988852 3445567777778888899999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-C--CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-K--LTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 480 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
++.+. |+ .++..|..+.-+|.-.+++|-++.-|++. . -.| -..+|..+.......||+..|.+.++-++..+|
T Consensus 349 RiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99887 64 46778889999999999999999888872 2 234 357888898888899999999999999999999
Q ss_pred CCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 555 KMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 555 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
++...+.+|+.+-.+.|+.++|+.++.......|
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999998876554
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=3.6e-12 Score=81.75 Aligned_cols=50 Identities=28% Similarity=0.571 Sum_probs=45.5
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 036160 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164 (601)
Q Consensus 115 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 164 (601)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998874
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=8.3e-08 Score=90.46 Aligned_cols=430 Identities=12% Similarity=0.060 Sum_probs=231.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHH--HHHHH--HhcCC
Q 036160 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA--LVSMY--MENGR 202 (601)
Q Consensus 127 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~--~~~~~ 202 (601)
+...|++++|.....++...+ +-|...+..-+-++.+.+.+++|..+.+.-.. ..+++. +=.+| .+.+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHccc
Confidence 445566666666666666543 33344455555555666666666544332111 011111 12333 34667
Q ss_pred ccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCCCChhHHHHHHHHHHH
Q 036160 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP-NMCTFIVILKACSSLSDVGFGKQLHAHTIK 281 (601)
Q Consensus 203 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 281 (601)
.++|...++.....+..+...-...+.+.|++++|+++|+.+..++..- +...-..++.+-... .. ..+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHHh
Confidence 7777777774444444455555566777777777777777776654321 111111111111000 00 01111
Q ss_pred ccCCCCcchhh---HHHHHHHhcCCHHHHHHHHhhC--------CCCCc----------ccHHHHHHHHHhcCChhHHHH
Q 036160 282 HSLDGNHVVGT---SLVDMYDKSGCLEDAGVAFDSL--------ANKDL----------FAYTAIITSYAQAGEAEMALK 340 (601)
Q Consensus 282 ~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~--------~~~~~----------~~~~~ll~~~~~~g~~~~a~~ 340 (601)
....| ..+|. .....+...|++.+|++++... .+.|. ..-..+.-.+...|+..+|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 11122 22222 2334556677888887777765 11111 112234456678899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHH---HhhcCCCchhh--HHHHHHHH-----------HHhCCCCchhHHHHHHHHHHhcCC
Q 036160 341 CFRKMRLEGIKSNEFTLASCL---NGCSPVATLAN--GRLLHSIA-----------VKTGHLLDMFVSTALVAMYAKCGS 404 (601)
Q Consensus 341 ~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 404 (601)
++...+.... +|......+. -+...-.++-. ....++.. ......-.+..-+.++.+| .+.
T Consensus 246 iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 246 IYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 9999888753 4433222221 12222222211 11111111 1111111111112333333 355
Q ss_pred HHHHHHHHcCCCCCC-HhHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHhhccCcHHHHHHHHH
Q 036160 405 IDDAEAVFKGSALRD-TASWNMMIGGYVK--HGLGEKALEAFRMMLDEGYVPDE--ITFVVVLSACSHMGLIEEGKKHFS 479 (601)
Q Consensus 405 ~~~A~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~ 479 (601)
.+.+.++........ ...+.+++..+.+ ...+.++.+++...-+. .|.. ......+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666777766665332 3345555544332 22467788888777764 3443 345556667788999999999998
Q ss_pred --------HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh--------cCCCCc-HHHHHHHHHHHHhcCChhHH
Q 036160 480 --------SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE--------TKLTPN-ALVWENLLGACSWHGNIELD 542 (601)
Q Consensus 480 --------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~p~-~~~~~~l~~~~~~~g~~~~A 542 (601)
.+.+. +.. +.+..++...+.+.++.+.|.+++.+ +...+. ..++..++..-.++|+.++|
T Consensus 401 ~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 44333 333 45667788888888876666666554 222222 23444445555688999999
Q ss_pred HHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHH
Q 036160 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 543 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 581 (601)
...++++++.+|++..+...+..+|+.. +.+.|..+-+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 9999999999999999998888888765 3455655544
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=7.4e-10 Score=112.13 Aligned_cols=244 Identities=11% Similarity=-0.010 Sum_probs=176.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHhh---------cCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036160 334 EAEMALKCFRKMRLEGIKSNEF-TLASCLNGC---------SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403 (601)
Q Consensus 334 ~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (601)
..++|...|++..+. .|+.. .+..+..++ ...++.++|...++.+.+.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356777888877664 44433 333332221 13455778888888887765 335667778888888999
Q ss_pred CHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHH
Q 036160 404 SIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFS 479 (601)
Q Consensus 404 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~ 479 (601)
++++|...|++.. +.+...+..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999998755 446678888999999999999999999999985 56543 33344455667899999999999
Q ss_pred HHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcC-CCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 480 SIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITETK-LTPN-ALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 480 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
++.+. .+|+ +..+..+..++...|++++|...+.++. ..|+ ....+.+...+...|+ .|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence 88765 2454 5567788899999999999999999843 4554 4455666667777774 7888888877754444
Q ss_pred CcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 557 ESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 557 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
+.....+..+|.-.|+.+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44445588889999999888877 7776543
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.1e-08 Score=90.01 Aligned_cols=450 Identities=9% Similarity=0.023 Sum_probs=228.0
Q ss_pred HHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCCh
Q 036160 23 LNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA 102 (601)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (601)
+.-+..+.++..|+.+++--...+-.-...+---+..++...|++++|..++..+.... .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677788899999988876643322222233334566678999999999999887744 45555555566666667889
Q ss_pred hHHHHHHhcCCCCCccchHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHH
Q 036160 103 DNALKVFYRIKDPDVVAWGAI-ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181 (601)
Q Consensus 103 ~~A~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (601)
.+|.++-...++ ....+.| ...--+.++-++...+-+.+... ..--.+|.+.....-.+++|++++...+..
T Consensus 108 ~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999888776543 3333333 33444566666655555544432 122233444444445678888888887765
Q ss_pred CCCCchhHHHHH-HHHHHhcCCccHHHHHHhhcCC--C-CcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHH
Q 036160 182 GFESDTLVGNAL-VSMYMENGRVSYGSRVFEAIAH--Q-DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257 (601)
Q Consensus 182 ~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 257 (601)
+ |.-...|.. .-+|.+.+-++-+.++++--.+ | ++.+.|.......+.=.-..|.+-.+++.+.+-..-+. -.
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f-~~ 257 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF-IE 257 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh-HH
Confidence 3 333333333 3445666667767666655433 3 33345555555555444445555555555553211111 11
Q ss_pred HHHH-HhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCC--
Q 036160 258 VILK-ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE-- 334 (601)
Q Consensus 258 ~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~-- 334 (601)
-+++ -+.--.+-+.|.+++--+.+. -|. ..-.|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 1111 122223445666665544432 121 223466778999999999999999876665555433334444443
Q ss_pred -----hhHHHHHHHHHHHcCCCCCHH-HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036160 335 -----AEMALKCFRKMRLEGIKSNEF-TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408 (601)
Q Consensus 335 -----~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (601)
..-|.+.|+-.-+.+..-|.. --.++..++.-..+++.+..++..+...-...|...+| +..+++..|.+.+|
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~ea 412 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEA 412 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHH
Confidence 233444444333333221111 01111122222233444444444444333333333332 44555555555555
Q ss_pred HHHHcCCCCC---CHhHHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHH-HHHHHhhccCcHHHHHHHHHHHHH
Q 036160 409 EAVFKGSALR---DTASWNM-MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV-VVLSACSHMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 409 ~~~~~~~~~~---~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~ 483 (601)
+++|-.+..| |..+|.+ |.++|...+.++.|+.++-++- -+.+..+.. .+...|.+.+.+=-|.+.|+.+..
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 5555444422 2333332 3345555555555544433221 111222222 222344455555445555554432
Q ss_pred HhCCCCChhHH
Q 036160 484 IYGITPTIKHF 494 (601)
Q Consensus 484 ~~~~~p~~~~~ 494 (601)
..|+++.|
T Consensus 490 ---lDP~pEnW 497 (557)
T KOG3785|consen 490 ---LDPTPENW 497 (557)
T ss_pred ---cCCCcccc
Confidence 24554444
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.8e-10 Score=99.77 Aligned_cols=242 Identities=14% Similarity=0.067 Sum_probs=196.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC
Q 036160 291 GTSLVDMYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368 (601)
Q Consensus 291 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 368 (601)
-+.+..+|.+.|.+.+|.+.|+...+ +-+.||-.+-+.|.+..++..|+.++.+-.+. .|-.+||.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l---------- 293 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL---------- 293 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh----------
Confidence 37789999999999999999988654 57788999999999999999999999987764 56666652
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 036160 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRM 445 (601)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (601)
..+.+.+...++.++|.++++... ..++....++...|.-.++++-|+.+|++
T Consensus 294 ------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 294 ------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred ------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 223344555566777777776544 34666667777888889999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-
Q 036160 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITE-TKLTP- 521 (601)
Q Consensus 446 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p- 521 (601)
+.+.|+ -++..|+.+.-+|.-.+++|-++.-|++.... --.|+ .++|..+.......|++.-|.+-|+- +...|
T Consensus 350 iLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 999985 46778888888899999999999999988775 44465 67899999999999999999999986 44455
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhc
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 570 (601)
+...++.|.-.-.+.|+.++|..++..+....|+......+++.+-.+.
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~~ 476 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVHY 476 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeeec
Confidence 5789999999999999999999999999999998877777766554433
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=8.7e-08 Score=91.34 Aligned_cols=148 Identities=11% Similarity=-0.002 Sum_probs=83.4
Q ss_pred ccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHH
Q 036160 63 NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKI 139 (601)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 139 (601)
..+++....++.+.+.+ +.+--..+.....-.+...|+-++|......-.. .+.++|+.+--.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45566666666666665 3232333444444445556777777777766554 3456677776666677778888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhc
Q 036160 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213 (601)
Q Consensus 140 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (601)
|+.....+ +-|...+.-+.-.-++.|+++........+.+.. +.....|..+..++.-.|+...|..+++..
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776642 2344445444444455566665555555554432 223334445555555555555555554443
No 74
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=6e-07 Score=89.85 Aligned_cols=460 Identities=14% Similarity=0.133 Sum_probs=265.4
Q ss_pred hhHHHHhhcCCChhHHHHHHhcCCC-CCccchHH-----HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 036160 90 CSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGA-----IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163 (601)
Q Consensus 90 ~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 163 (601)
..+.+.|.++|-...|++.+..+.+ ..+..-+. -+-.|...-.++.+.+.++.|...+++-|..+...+..-|.
T Consensus 610 a~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~ 689 (1666)
T KOG0985|consen 610 AEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYH 689 (1666)
T ss_pred HHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444556666666666666655543 00000011 11223334456777777777877777777766666655555
Q ss_pred ccCCcchhhHHHHHHHHH-----------CCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC-----------------
Q 036160 164 ETGDQRCGESIHAVICKY-----------GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH----------------- 215 (601)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------- 215 (601)
..-..+...++|+..... ++..|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 690 eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~D 769 (1666)
T KOG0985|consen 690 EQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTD 769 (1666)
T ss_pred HHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccc
Confidence 544455555555554432 3456777777888999999998888887654310
Q ss_pred --C------------CcccH------HHHHHHHhcC--------------------------------------------
Q 036160 216 --Q------------DSVSW------NALFSRFQDY-------------------------------------------- 231 (601)
Q Consensus 216 --~------------~~~~~------~~li~~~~~~-------------------------------------------- 231 (601)
| |.+.| -..|..|.+.
T Consensus 770 qlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvE 849 (1666)
T KOG0985|consen 770 QLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVE 849 (1666)
T ss_pred cCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHH
Confidence 0 11100 0112222221
Q ss_pred --CCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCC-hhHHH---------HHHHHHHHcc----------------
Q 036160 232 --ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD-VGFGK---------QLHAHTIKHS---------------- 283 (601)
Q Consensus 232 --~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~---------~~~~~~~~~~---------------- 283 (601)
++..--...++...+.|. .|..|++.+...|...++ ++.-. .+-.-..++.
T Consensus 850 kRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~e 928 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLE 928 (1666)
T ss_pred hhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHH
Confidence 222222333444445553 467777777777665443 22111 1111111111
Q ss_pred ---CCCCcchhhHHHHHHHhcCCHHHHHHHHhhC-----------C------CCCcccHHHHHHHHHhcCChhHHHHHHH
Q 036160 284 ---LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL-----------A------NKDLFAYTAIITSYAQAGEAEMALKCFR 343 (601)
Q Consensus 284 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 343 (601)
+......|....+.+.+..+.+--.+++.+- . ..|+..-+..+.++...+-+.+.+++++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 1111123334444444555554444443221 1 1256666777888888888899999998
Q ss_pred HHHHcCCCC--CHHHHHHHHHhh---------------------------cCCCchhhHHHHHHHHHHhCCCCchhHHHH
Q 036160 344 KMRLEGIKS--NEFTLASCLNGC---------------------------SPVATLANGRLLHSIAVKTGHLLDMFVSTA 394 (601)
Q Consensus 344 ~m~~~~~~p--~~~~~~~ll~~~---------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 394 (601)
++.-..-.- +...-+.++-.. ...+-+++|..+|+.. ..+....+.
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~V 1083 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQV 1083 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHH
Confidence 876432111 111111222111 1122223333333221 111111222
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHH
Q 036160 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474 (601)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 474 (601)
|+ -..+.+++|.++-++.. .+..|+.+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.|++-
T Consensus 1084 Li---e~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1084 LI---ENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HH---HHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHH
Confidence 22 22355566666555544 346799999999999999999887744 23667899999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 475 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
.+++...+++ .-.|.++ +.|+.+|++.++..+..+++. .||..-....+.-|...|.++.|.-+|.-
T Consensus 1153 v~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------ 1219 (1666)
T KOG0985|consen 1153 VKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN------ 1219 (1666)
T ss_pred HHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH------
Confidence 9999888776 6667665 668999999999888776653 58888888889999999999888887763
Q ss_pred CCCcceeehhhhhhhcCChhhHHHHHH
Q 036160 555 KMESNYVFPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 555 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 581 (601)
..-|..|+..+...|+++.|...-+
T Consensus 1220 --vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1220 --VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3346667777777888777766544
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1.6e-10 Score=106.81 Aligned_cols=216 Identities=11% Similarity=-0.044 Sum_probs=98.6
Q ss_pred hcCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036160 331 QAGEAEMALKCFRKMRLEG-IKSN--EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407 (601)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (601)
..+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3445556666666665432 1121 1234444444555566666666655555543 2234555555555566666666
Q ss_pred HHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 408 AEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 408 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
|...|++.. +.+...|..+..++...|++++|++.+++..+. .|+..........+...+++++|...+......
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 655555443 223445555555555556666666666555553 333321111111122344555555555443322
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHH--HHHhHh-cC----CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 485 YGITPTIKHFACMIDILGRAGKFTEI--ENFITE-TK----LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 485 ~~~~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
..|+...+ .+ .....|+..++ .+.+.+ .. ..| ....|..++..+.+.|++++|+..++++++.+|
T Consensus 195 --~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 --LDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred --CCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22222111 11 11223333222 222211 11 111 223555555555566666666666666665554
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=2.6e-09 Score=96.43 Aligned_cols=197 Identities=14% Similarity=0.182 Sum_probs=134.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036160 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399 (601)
Q Consensus 320 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (601)
..+..+...+...|++++|...+++..... |+ +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHHH
Confidence 345566666777777777777777665532 22 223334455555
Q ss_pred HhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcHHHHH
Q 036160 400 AKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGK 475 (601)
Q Consensus 400 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 475 (601)
...|++++|.+.+++.. +.+...+..+...+...|++++|.+.+++..+....| ....+..+..++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666665433 3345566677777888888888888888887643222 2345666777888889999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 476 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
..+++..+. .+.+...+..++..+...|++++|...+++. ...| +...+..++..+...|+.++|....+.+.+..
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 156 KYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 998888764 2233667778888888999999999888873 2233 56666777788888899999988888877665
Q ss_pred C
Q 036160 554 P 554 (601)
Q Consensus 554 p 554 (601)
|
T Consensus 234 ~ 234 (234)
T TIGR02521 234 P 234 (234)
T ss_pred c
Confidence 4
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.3e-07 Score=89.26 Aligned_cols=436 Identities=12% Similarity=0.059 Sum_probs=245.7
Q ss_pred HHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhh--HHHHhh-
Q 036160 21 ALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCS--LVDMYS- 97 (601)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~- 97 (601)
+=++.+...|++++|.....++...+ +-+...+..-+-++.+.+.+++|..+.+.-... .+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHHHH
Confidence 44667788999999999999999875 556778888888999999999999665543221 11121 234444
Q ss_pred -cCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCCcchhhHHH
Q 036160 98 -KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP-NQFVLTSLVRATTETGDQRCGESIH 175 (601)
Q Consensus 98 -~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 175 (601)
+.+..++|+..++-....+..+-..-...+.+.|++++|+++|+.+.+.+..- +...-..++.+-.. ...
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-
Confidence 77999999999995554454455666677889999999999999998775321 11111222211111 001
Q ss_pred HHHHHHCCCCchhHHH---HHHHHHHhcCCccHHHHHHhhcC--------CCCcc----------cHHHHHHHHhcCCCc
Q 036160 176 AVICKYGFESDTLVGN---ALVSMYMENGRVSYGSRVFEAIA--------HQDSV----------SWNALFSRFQDYESP 234 (601)
Q Consensus 176 ~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~----------~~~~li~~~~~~~~~ 234 (601)
+.+......| ..+|. .....++..|++.+|+++++... +.|.. .---+...+...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1122222223 22333 23455677899999999998772 11111 122345567788999
Q ss_pred hhHHHHHHHHHHCCCCCCHhhHHHHHHHh---cCCCChhH--HHHHHHHHHHc-----------cCCCCcchhhHHHHHH
Q 036160 235 DQGLRIFYQMLLKGFKPNMCTFIVILKAC---SSLSDVGF--GKQLHAHTIKH-----------SLDGNHVVGTSLVDMY 298 (601)
Q Consensus 235 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~--a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~ 298 (601)
.+|..++....... .+|........+-+ ....++-. ....++..... .-......-+.++..
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l- 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL- 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999988874 44554433333222 22111111 11111111100 000000001122222
Q ss_pred HhcCCHHHHHHHHhhCCCCC-cccHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHH
Q 036160 299 DKSGCLEDAGVAFDSLANKD-LFAYTAIITSYAQ--AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375 (601)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~-~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 375 (601)
..+..+.+.++...++... ...+.+++....+ ...+.++.+++...-+....-.....-..+......|+++.|.+
T Consensus 319 -~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 319 -FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 2345556666666655433 2334444443322 22466677777666554322223444455556677888888888
Q ss_pred HHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC------CCC----HhHHHHHHHHHHhCCChH
Q 036160 376 LHS--------IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA------LRD----TASWNMMIGGYVKHGLGE 437 (601)
Q Consensus 376 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~----~~~~~~l~~~~~~~~~~~ 437 (601)
++. .+.+.+.. +.+..+++..+.+.++.+.|..++.+.. .+. ..++.-+...-.++|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 877 33333333 3444566677777766666655554322 111 122333344445667777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHH
Q 036160 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 479 (601)
+|..+++++.+. .++|..+...++.+|++. +++.|..+-.
T Consensus 476 ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 476 EASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 777888777774 255666777777777664 4566666543
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=1.2e-09 Score=110.67 Aligned_cols=210 Identities=12% Similarity=-0.059 Sum_probs=162.7
Q ss_pred CchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCC
Q 036160 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK---------CGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGL 435 (601)
Q Consensus 368 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 435 (601)
++.+.|...+++..+.... +...+..+..++.. .+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3457888888888876432 34455555554432 244789999888655 4477788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 036160 436 GEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENF 513 (601)
Q Consensus 436 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 513 (601)
+++|...|+++.+. .|+. ..+..+..++...|++++|...+++..+. .|+ ...+..++..+...|++++|+..
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 5654 57888888999999999999999999865 555 33334455567778999999999
Q ss_pred hHhcC-C-CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 514 ITETK-L-TP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 514 ~~~~~-~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
+++.. . .| ++..+..++.++...|++++|+..++++....|.+......++..|...|+ +|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 98842 2 45 455678888889999999999999999998889888888888888888884 88887777654
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.3e-06 Score=87.69 Aligned_cols=234 Identities=13% Similarity=0.039 Sum_probs=139.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036160 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398 (601)
Q Consensus 319 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (601)
+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++...++....|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 455777777777777777777666432 466788889999999999999888888888776666554 578888
Q ss_pred HHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHH
Q 036160 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 478 (601)
|++.+++.+-++++. .||......+.+-|...|.++.|.-+|... ..|..|...+...|++..|...-
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888777654 345555555556666666666665555432 23555555666666666655543
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 479 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
++. .+..+|..+..+|...+.+.-|. +..+.+--...-+..++..|...|-+++-+.+++..+.+..-+-.
T Consensus 1244 RKA-------ns~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1244 RKA-------NSTKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred hhc-------cchhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 221 23445555555555444433221 111222234445556666666666666666666666665554444
Q ss_pred ceeehhhhhhhcCChhhHHHHHHH
Q 036160 559 NYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 559 ~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
.+.-|+-+|++ =+.++-.+.++.
T Consensus 1315 mfTELaiLYsk-ykp~km~EHl~L 1337 (1666)
T KOG0985|consen 1315 MFTELAILYSK-YKPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHH
Confidence 44444433332 233333444433
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=9.6e-08 Score=93.45 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=42.6
Q ss_pred HHhcC-ChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHH
Q 036160 533 CSWHG-NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 533 ~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
+.+.. =.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33444 368899999999999999999999999999999999988887653
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=1.5e-07 Score=90.84 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=58.9
Q ss_pred HHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHH
Q 036160 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305 (601)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 305 (601)
.+......|.+|+.+++.+.+.. .-..-|..+...|+..|+++.|+++|.+.- .++.-|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 44555667777777777666552 233445566666777777777766665331 2344556666666666
Q ss_pred HHHHHHhhCCCC--CcccHHHHHHHHHhcCChhHHHHHH
Q 036160 306 DAGVAFDSLANK--DLFAYTAIITSYAQAGEAEMALKCF 342 (601)
Q Consensus 306 ~a~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~ 342 (601)
+|.++-.+...| .+..|-+-..-+-++|++.+|.++|
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 666655555444 2233444444444455555555444
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=3.4e-07 Score=87.42 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=90.3
Q ss_pred CCCHh--hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcC-C-CCcHHHH
Q 036160 452 VPDEI--TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITETK-L-TPNALVW 526 (601)
Q Consensus 452 ~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~ 526 (601)
+|... ++..++..+-+.|+++.|...++..+. ..|+ ++.|..=++++...|.+++|..++++.. + .||..+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 44443 455667788888999999999887764 4777 6677777788888999999999988743 2 4455554
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC-------CCcceee--hhhhhhhcCChhhHHHHHHHHH
Q 036160 527 ENLLGACSWHGNIELDEKDAEKLLELEPK-------MESNYVF--PSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
..-+....+.++.++|.++..+......+ ..-.|+. =+.+|.++|++-+|++-|..+.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 46677778888899998888887765541 0111222 3456778888888877665443
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=6.9e-07 Score=87.54 Aligned_cols=299 Identities=11% Similarity=0.080 Sum_probs=167.7
Q ss_pred HHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcC---
Q 036160 23 LNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--- 99 (601)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 99 (601)
...+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.++ .+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 45678899999999999875543 344455677778889999999999999999998773 3555566666665322
Q ss_pred --CChhHHHHHHhcCCC--CCccchHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHH
Q 036160 100 --GLADNALKVFYRIKD--PDVVAWGAIITCLDQQGCC-QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174 (601)
Q Consensus 100 --~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 174 (601)
.+.+....+++++.+ |...+...+.-.+.....+ ..+...+..+...|+++ +|..|-..|.......-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 245666777776654 4333333332222222223 33445556666667543 344444444433333333334
Q ss_pred HHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcC-CCCcc--cHHHHHHHHhcCCCchhHHHHHHHHHHCCCCC
Q 036160 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSV--SWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251 (601)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 251 (601)
+....... ...+.+.... ..-. .|... ++..+...|...|++++|++.+++..+. .|
T Consensus 166 ~~~~~~~l---------------~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tP 225 (517)
T PF12569_consen 166 VEEYVNSL---------------ESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TP 225 (517)
T ss_pred HHHHHHhh---------------cccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CC
Confidence 33333220 0000000000 0000 01111 2334445555666666666666666555 34
Q ss_pred C-HhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCccc---------
Q 036160 252 N-MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA--------- 321 (601)
Q Consensus 252 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 321 (601)
+ +..|..-.+.+-+.|++.+|...++...+.. ..|-.+-+..+..+.++|+.++|.+++....+++...
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc 304 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQC 304 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHH
Confidence 3 4455555556666666666666666665544 2244444556666777777777777777666544211
Q ss_pred -H--HHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 322 -Y--TAIITSYAQAGEAEMALKCFRKMRL 347 (601)
Q Consensus 322 -~--~~ll~~~~~~g~~~~a~~~~~~m~~ 347 (601)
| .....+|.+.|++..|++.|....+
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 2345678888888888877766544
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.7e-06 Score=83.53 Aligned_cols=293 Identities=12% Similarity=0.084 Sum_probs=168.8
Q ss_pred cccHHHHHHHHhhCCChhhHHHHHHhhhhcC--------CCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChh
Q 036160 16 VVSWNALLNGYAESGDGQKVMHLFCSMKDME--------KKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF 87 (601)
Q Consensus 16 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (601)
-..|..|.+.|.+..+.+-|.-++-.|.... .+.+..+=..+.-.....|.+++|..+|++-.+..
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D------ 830 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD------ 830 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 4568888888888888888877776664311 11111222333333446788888888888776532
Q ss_pred HHhhHHHHhhcCCChhHHHHHHhcCCC-CCccchHHHHHHHHhcCChhHHHHHHHHHH----------HcC---------
Q 036160 88 LSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGAIITCLDQQGCCQEAAKIFNLMR----------ESS--------- 147 (601)
Q Consensus 88 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----------~~~--------- 147 (601)
.|-..|...|.|++|.++-+.-.. .=..+|......+-..++.+.|++.|++.. ...
T Consensus 831 ---LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~ 907 (1416)
T KOG3617|consen 831 ---LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR 907 (1416)
T ss_pred ---HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH
Confidence 344556677888888888765443 222356666666667778888888776521 110
Q ss_pred CCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHH
Q 036160 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227 (601)
Q Consensus 148 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 227 (601)
-..|...|..-..-+-..|+.+.|+.+|....+ |-++++..|-.|+.++|.++-++- .|..+...+.+.
T Consensus 908 ~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 908 RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARM 976 (1416)
T ss_pred hccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHH
Confidence 012333333344444455666666666655443 345666666777777777776643 355566677788
Q ss_pred HhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhc---------------CCCChhHHHHHHHHHHHccCCCCcchhh
Q 036160 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS---------------SLSDVGFGKQLHAHTIKHSLDGNHVVGT 292 (601)
Q Consensus 228 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (601)
|-..|++.+|..+|.+... |...|+.|- ...+.-.|.++|++.-- -..
T Consensus 977 YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~ 1039 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAH 1039 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhh
Confidence 8888888888888876542 222222222 22223334444443310 112
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--------------CCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 036160 293 SLVDMYDKSGCLEDAGVAFDSLAN--------------KDLFAYTAIITSYAQAGEAEMALKCFRKM 345 (601)
Q Consensus 293 ~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 345 (601)
.-+..|-+.|.+.+|+++--+-.+ .|+...+--..-|+...++++|..++-..
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345567777877777665333222 24444444555566666777776665443
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=3.2e-08 Score=95.45 Aligned_cols=200 Identities=18% Similarity=0.178 Sum_probs=129.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036160 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403 (601)
Q Consensus 324 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (601)
.+...|...+++++|..+|+++..-- +.......+.-..+++.|..+|.+.|
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~----------------------------e~~~G~~h~~va~~l~nLa~ly~~~G 297 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIR----------------------------EEVFGEDHPAVAATLNNLAVLYYKQG 297 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH----------------------------HHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 35566777888888888888775421 00000000111223334444455555
Q ss_pred CHHHHHHHHcCCC----------CCCHh-HHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCH----hhHHHHHHHh
Q 036160 404 SIDDAEAVFKGSA----------LRDTA-SWNMMIGGYVKHGLGEKALEAFRMMLDE---GYVPDE----ITFVVVLSAC 465 (601)
Q Consensus 404 ~~~~A~~~~~~~~----------~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~~----~~~~~l~~~~ 465 (601)
++++|...++... .+.+. .++.++..++..+++++|..++++..+. -+.++. .+++.|...|
T Consensus 298 Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 298 KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 5544444433211 12222 3555667788888888888888766542 122332 4788999999
Q ss_pred hccCcHHHHHHHHHHHHHHh----C-CCCC-hhHHHHHHHHHHhcCChHHHHHHhHhc-------C-CCCc-HHHHHHHH
Q 036160 466 SHMGLIEEGKKHFSSIKKIY----G-ITPT-IKHFACMIDILGRAGKFTEIENFITET-------K-LTPN-ALVWENLL 530 (601)
Q Consensus 466 ~~~~~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~ 530 (601)
...|++++|.+++++++... + ..+. ...++.|...|.+.+++++|.++|.+. + -.|+ ..+|..|+
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 99999999999999887652 1 1222 456778889999999999888888762 1 2333 46889999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 036160 531 GACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~ 551 (601)
.+|.+.|+++.|+++.+++..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999984
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.3e-07 Score=83.65 Aligned_cols=391 Identities=10% Similarity=-0.018 Sum_probs=243.0
Q ss_pred chhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccH-HHHHHHHhcCC-CchhHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 036160 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW-NALFSRFQDYE-SPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263 (601)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 263 (601)
+...-...+.+|...++-+.|...+..++..-.... |.|+.-+.+.| +..++.--+.+.... .+.-......++.--
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~aL~~i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMALQVIEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-cchHHHHHHHHHHHh
Confidence 334455667777788888899988888876433333 33333333332 222222222222221 010000111111100
Q ss_pred cCCCChhHHHHHHHHHHHccCCCCcchhhHHHH--HHHhcCCHHHHHHHHhhCCC-----CCcccHHHHHHHHHhcCChh
Q 036160 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD--MYDKSGCLEDAGVAFDSLAN-----KDLFAYTAIITSYAQAGEAE 336 (601)
Q Consensus 264 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~g~~~ 336 (601)
. ..+..--..|....++|.......-+. +.+..++...|...+-.+.. .|+.....+.+.+...|+.+
T Consensus 175 v-----~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 175 V-----NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred h-----cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0 000111111222223333333333333 33444555555554443332 36777888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHH-HHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCC
Q 036160 337 MALKCFRKMRLEGIKSNEFT-LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415 (601)
Q Consensus 337 ~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 415 (601)
+|...|++.+. +.|...+ .....-.+.+.|+.+....+...+....- .....|-.-...+...++++.|..+-++.
T Consensus 250 ~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 250 QAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred HHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999998765 3443332 11112223466777776666655544321 11122222233345567888888888765
Q ss_pred CC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh
Q 036160 416 AL---RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491 (601)
Q Consensus 416 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 491 (601)
.. +++..+-.-...+...|++++|.-.|+..+. +.|. -.+|..|+.+|...|+..+|.-+-+...+. .+.+.
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA 402 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSA 402 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcch
Confidence 53 3444555555678899999999999999987 4654 569999999999999999999888877765 44556
Q ss_pred hHHHHHH-HHHHhcC-ChHHHHHHhHh-cCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhh
Q 036160 492 KHFACMI-DILGRAG-KFTEIENFITE-TKLTPN-ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567 (601)
Q Consensus 492 ~~~~~l~-~~~~~~g-~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 567 (601)
.+...+. ..+.-.- --++|..++++ +.++|+ ....+.+...|...|..+.++.++++.+...| |...+..|+.+.
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIM 481 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 6665553 3333222 24789999988 778896 56778888999999999999999999999999 668899999999
Q ss_pred hhcCChhhHHHHHHHHHhcCCcC
Q 036160 568 ATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 568 ~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
.....+++|.++|....+..|+.
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccc
Confidence 99999999999998877666544
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.11 E-value=5.5e-07 Score=90.19 Aligned_cols=552 Identities=12% Similarity=0.018 Sum_probs=288.9
Q ss_pred cHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhc-CCCChhHHhhHHHHh
Q 036160 18 SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMY 96 (601)
Q Consensus 18 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 96 (601)
.|..|-..|...-+...|..+|++..+.. .-+..........|++..+++.|..+.-...+.. ......-|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 57777777777777777777777776643 3345567777777777778877777732222211 011122333344556
Q ss_pred hcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH--HHHHHhccCCcchh
Q 036160 97 SKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS--LVRATTETGDQRCG 171 (601)
Q Consensus 97 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~a 171 (601)
...++...|..-|+.... .|...|..+..+|.+.|++..|+++|.+.... .|+.. |.. .....+..|.+.++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~-y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK-YGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH-HHHHHHHHHHHHhhhHHHH
Confidence 677777777777777665 35567777778888888888888888776653 44432 221 12223456777777
Q ss_pred hHHHHHHHHHC------CCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHH-HHHHHhcCC----CchhHHHH
Q 036160 172 ESIHAVICKYG------FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA-LFSRFQDYE----SPDQGLRI 240 (601)
Q Consensus 172 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~~----~~~~a~~~ 240 (601)
...+......- ...-..++-.+...+.-.|=..+|..+|+.-.+ .+.. ++...+... -...|..+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie----~f~~~l~h~~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE----SFIVSLIHSLQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHhhhhhHHHHHHHhHHHHH
Confidence 77776655431 011112222222222222333333333332211 1110 111100000 01223333
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCCCCh---h---HHHHHHHHHHHccCCCCcchhhHHHHHHHh----cC----CHHH
Q 036160 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV---G---FGKQLHAHTIKHSLDGNHVVGTSLVDMYDK----SG----CLED 306 (601)
Q Consensus 241 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~ 306 (601)
|-... .. .|+.....++..-.-..+.. + .+.+.+-. ......+...|..++..|.+ .+ +...
T Consensus 726 f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 726 FSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 33332 11 33333333333312222222 1 01111100 01112224444444444433 11 2235
Q ss_pred HHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHh
Q 036160 307 AGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383 (601)
Q Consensus 307 a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 383 (601)
|...+....+ .+..+|+.+--. ...|++.-|.-.|-+-... .+.+..+|..+--.+....+++.|...|......
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 5666655433 355666665444 5556666666555544332 2334556666666777888888888888877664
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHcC--------CCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH-------
Q 036160 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKG--------SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD------- 448 (601)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~------- 448 (601)
. +.+...|-.........|+.-++..+|.. ...++..-|-+.......+|+.++-+...+.+..
T Consensus 880 d-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 D-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred C-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 3 22334443344444456777777777753 1133444555555555666666554444333322
Q ss_pred --cCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH----HHHHHHHhcCChHHHHHHhHhcCCCCc
Q 036160 449 --EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA----CMIDILGRAGKFTEIENFITETKLTPN 522 (601)
Q Consensus 449 --~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~ 522 (601)
.+.+.+...|........+.+.+..|.+...+.+......-+...|+ .+.+.++..|.++.|..-+.......+
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evd 1038 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVD 1038 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHH
Confidence 12333445777777777778888888777776554322233333444 456677778888877776665443334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc---eeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN---YVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 523 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
..+...-+.. .-.|+++++.+.|++++.+..++... ...++.....++..+.|+..+-....
T Consensus 1039 Edi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1039 EDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 4333332222 44688999999999999876544332 22344555667788888877655544
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.7e-08 Score=83.69 Aligned_cols=190 Identities=15% Similarity=0.091 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccC
Q 036160 394 ALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMG 469 (601)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~ 469 (601)
.|.-.|...|+...|..-+++.. +.+..+|..+...|.+.|+.+.|.+.|++..+. .|+. ...|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 34445555566666655555444 223345555555566666666666666665553 3333 34555555555556
Q ss_pred cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHH
Q 036160 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAE 547 (601)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 547 (601)
++++|...|++........--..+|..++-+..++|+++.|..+|++ +...| .+.....+.......|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 66666666665555422222244555566666666666666666655 33444 34455555555556666666666666
Q ss_pred HHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 548 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
+...-.+-+...+...+.+-...|+.+-|.++=.++.+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555444444444444555555666555555554443
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=4.9e-08 Score=90.38 Aligned_cols=215 Identities=13% Similarity=0.057 Sum_probs=144.6
Q ss_pred CchhhHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHH
Q 036160 368 ATLANGRLLHSIAVKTG-HLL--DMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALE 441 (601)
Q Consensus 368 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 441 (601)
+..+.+..-+.++.... ..| ....|..+...|...|+.++|...|++.. +.+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555555555555432 222 23556777778888899999888887554 4467788888888999999999999
Q ss_pred HHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cC-
Q 036160 442 AFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TK- 518 (601)
Q Consensus 442 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~- 518 (601)
.|++..+ +.|+. .++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+.+ ..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9988887 45654 57777778888889999999998888765 45433222223334556788889888866 22
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCC
Q 036160 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLL-------ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591 (601)
Q Consensus 519 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 591 (601)
..|+. |. ........|+...+ +.++.+. ++.|+.+.+|..++.++...|++++|+.+|++..+.++...
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23332 22 12333345555443 2333333 55666778889999999999999999999988887666433
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=3.8e-07 Score=88.19 Aligned_cols=304 Identities=14% Similarity=0.082 Sum_probs=148.1
Q ss_pred HHHHHHHhcCCccHHHHHHhh--cCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCCh
Q 036160 192 ALVSMYMENGRVSYGSRVFEA--IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269 (601)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 269 (601)
+.|..|.+.|.+-+|.+.-.. ....|......+..++.+...+++|-++|+++.. +...+..+-+...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 446667777776666554421 1224455555566666666666666666666542 11222333232233
Q ss_pred hHHHHHHHHHHHccCCCCcchh-hHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036160 270 GFGKQLHAHTIKHSLDGNHVVG-TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348 (601)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 348 (601)
.+|.++-+..- +...+.. ..-...+...|+++.|...|-+... .--.+.+-.....|.+|+.+++.++..
T Consensus 691 ~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 33433322211 1111100 1112223344555555544433210 111223344556667777777666654
Q ss_pred CCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC--CHhHHHHH
Q 036160 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR--DTASWNMM 426 (601)
Q Consensus 349 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l 426 (601)
.. ...-|..+..-|+..|+++.|.++|...- .++.-|.+|.+.|++++|.++-.+...| ....|-+-
T Consensus 762 k~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 KT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred cc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 32 22344555556666666666666664322 2244556666666666666666554433 33344444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhc
Q 036160 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRA 504 (601)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 504 (601)
..-+-++|++.+|.++|-... .|+. .+..|-+.|..+..+++..+- .|+ ..+...+..-|...
T Consensus 831 aedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAE 895 (1636)
T ss_pred HHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhc
Confidence 445556666666666553322 2332 234455666666655554322 222 33444555666666
Q ss_pred CChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 036160 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545 (601)
Q Consensus 505 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 545 (601)
|+..+|...|-+.+ -|...++.|...+-|++|-++
T Consensus 896 g~lkaae~~flea~------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred cChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHH
Confidence 66666666655543 233444555555555554444
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=5.3e-09 Score=98.23 Aligned_cols=214 Identities=13% Similarity=0.112 Sum_probs=159.8
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHH
Q 036160 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEA 442 (601)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 442 (601)
+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++.. +.|....-.|...|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455555555555555443 2245566666666667776666666666443 55677777888888888888889998
Q ss_pred HHHHHHcCCCCCHhhHHHHH-----------HHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036160 443 FRMMLDEGYVPDEITFVVVL-----------SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511 (601)
Q Consensus 443 ~~~m~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 511 (601)
++.-+... |. |..+. ..+..........++|-++....+..+|+++...|.-.|.-.|.+++|+
T Consensus 376 L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 88876542 11 11111 1223333445566666666555465688899999999999999999999
Q ss_pred HHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 512 NFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 512 ~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
..|+. +..+| |...||-|+..+....+.++|+..|.+++++.|.-..+.++|+-.|...|.++||.++|-....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 66788 7889999999999999999999999999999999999999999999999999999999877654
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.7e-07 Score=86.29 Aligned_cols=248 Identities=14% Similarity=0.027 Sum_probs=149.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCc------hhHHHHHH
Q 036160 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD------MFVSTALV 396 (601)
Q Consensus 323 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~ 396 (601)
..+.++.-+..+++.|++.+....+.. -+..-++..-.++...|............++.|...- ......+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344555555666666666666665543 2222333334445555555554444443333322110 01111234
Q ss_pred HHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHH
Q 036160 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGK 475 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~ 475 (601)
.+|.+.++++.+...|++...+... -....+....+++.+..+...- +.|... -...-...+.+.|++..|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 4666677778887777764422110 1122233445555555554443 344432 2222356677889999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 476 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
..|.++++. .+-|...|+.-..+|.+.|.+..|++-.+. +.+.| ....|.--+.++....+++.|.+.|+++++.+
T Consensus 379 ~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998876 244578889999999999999999888776 44555 45566666667777788999999999999999
Q ss_pred CCCCcceeehhhhhhhcCChhhHHHHHH
Q 036160 554 PKMESNYVFPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 554 p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 581 (601)
|++......+..+...+.......++.+
T Consensus 457 p~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 457 PSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred chhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 9888887777777776444444444444
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=1.6e-08 Score=91.99 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=142.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHh
Q 036160 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAK 401 (601)
Q Consensus 323 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 401 (601)
.-+.+++...|+++.++ .++... -.|.......+...+...++-+.+..-++........ .+..+......++..
T Consensus 39 ~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 33455666666655433 222222 2455555544444444433433443333322222222 222333333455667
Q ss_pred cCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc--c--CcHHHHHHH
Q 036160 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH--M--GLIEEGKKH 477 (601)
Q Consensus 402 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~--~~~~~a~~~ 477 (601)
.|++++|.+++... .+.......+..+.+.++++.|.+.++.|.+. ..| .+...+..++.. . +.+.+|..+
T Consensus 115 ~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 89999999988876 56677777888999999999999999999873 444 344445554432 2 368899999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCC
Q 036160 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNI-ELDEKDAEKLLELEP 554 (601)
Q Consensus 478 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p 554 (601)
|+++.+. ..+++.+.+.++.+....|++++|.+++++ +...| ++.++..++-+....|+. +.+.+.+.++....|
T Consensus 190 f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 190 FEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9998654 567788888899999999999999999887 55566 677777777777777776 678888888888888
Q ss_pred CCC
Q 036160 555 KME 557 (601)
Q Consensus 555 ~~~ 557 (601)
+++
T Consensus 268 ~h~ 270 (290)
T PF04733_consen 268 NHP 270 (290)
T ss_dssp TSH
T ss_pred CCh
Confidence 653
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=2.9e-09 Score=96.79 Aligned_cols=245 Identities=11% Similarity=0.001 Sum_probs=159.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036160 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408 (601)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (601)
+.-.|++..++.-.+ ...............+.+++...|..+.+. ..+.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344677777775555 222211122334445556666667655432 3333333 56666665565555444556666
Q ss_pred HHHHcCCC-CC----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHH
Q 036160 409 EAVFKGSA-LR----DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 409 ~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 483 (601)
..-+++.. .+ +....-.....+...|++++|++++++- .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66554433 22 2222222334566789999999988642 3556677788899999999999999999974
Q ss_pred HhCCCCChhHHHHHHHHHH----hcCChHHHHHHhHhcC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 484 IYGITPTIKHFACMIDILG----RAGKFTEIENFITETK--LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 484 ~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
+..| .+...++.++. -.+.+++|..+|+++. ..+++.+++.+..++...|++++|++.++++++.+|+++
T Consensus 160 ---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 160 ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp ---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred ---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 3444 33334444433 2346999999999965 456888899999999999999999999999999999999
Q ss_pred cceeehhhhhhhcCCh-hhHHHHHHHHHhcCC
Q 036160 558 SNYVFPSDISATQGRW-NDFSGVRALLSSQGI 588 (601)
Q Consensus 558 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~ 588 (601)
.+..+++.+....|+. +.+.+++.+++...+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999999999999999 667789998876544
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=1.6e-06 Score=76.35 Aligned_cols=314 Identities=15% Similarity=0.127 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHH---HHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHH-HHHHhc
Q 036160 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF---SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV-ILKACS 264 (601)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~ 264 (601)
-..-+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+....+. +||-..-.. -...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 3344556667778888888888888887777777665 3677888888888888777765 566432211 111233
Q ss_pred CCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 036160 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344 (601)
Q Consensus 265 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 344 (601)
+.|.++.|..-|+.+.+.....+. ...++.+.-..++-+. ....+..+...|+...|+.....
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHH
Confidence 445555555555544443211100 0001110000000000 11122223334444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc---CCCCCCHh
Q 036160 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK---GSALRDTA 421 (601)
Q Consensus 345 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~ 421 (601)
+ .+.. +.|...+..-..+|...|++..|+.-++ ++...+..
T Consensus 181 l-----------------------------------lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 181 L-----------------------------------LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred H-----------------------------------HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence 4 4322 2345555666677777777777765554 33344555
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-h---HHHH---------HHHhhccCcHHHHHHHHHHHHHHhCCC
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-T---FVVV---------LSACSHMGLIEEGKKHFSSIKKIYGIT 488 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~---~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 488 (601)
..--+-..+...|+.+.++...++-.+ +.||.. + |..| +......++|.++.+..+...+. .
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---e 299 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---E 299 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---C
Confidence 555566667777888877777777776 467653 1 2221 12234567788888888777654 4
Q ss_pred CC-----hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccee
Q 036160 489 PT-----IKHFACMIDILGRAGKFTEIENFITE-TKLTPN-ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561 (601)
Q Consensus 489 p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 561 (601)
|. ...+..+..++...|++-+|++...+ +.+.|| ..++..-..+|....+++.|+.-|+++.+.+|+|..+-.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 44 23455667788888999999999998 567784 888888899999999999999999999999998766544
Q ss_pred e
Q 036160 562 F 562 (601)
Q Consensus 562 ~ 562 (601)
.
T Consensus 380 G 380 (504)
T KOG0624|consen 380 G 380 (504)
T ss_pred H
Confidence 3
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.00 E-value=2.6e-08 Score=85.44 Aligned_cols=149 Identities=10% Similarity=0.071 Sum_probs=103.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036160 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507 (601)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 507 (601)
..|.+.|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..++..|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 456777777765444332221 11 0122356667777777766654 244577888888888888888
Q ss_pred HHHHHHhHh-cCCCC-cHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHH
Q 036160 508 TEIENFITE-TKLTP-NALVWENLLGAC-SWHGN--IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 508 ~~A~~~~~~-~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
++|...+++ +.+.| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888887 44556 667777777764 56666 48888888888888888888888888888888888888888888
Q ss_pred HHhcCCcC
Q 036160 583 LSSQGIKK 590 (601)
Q Consensus 583 ~~~~~~~~ 590 (601)
+.+..+..
T Consensus 170 aL~l~~~~ 177 (198)
T PRK10370 170 VLDLNSPR 177 (198)
T ss_pred HHhhCCCC
Confidence 87655543
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=2.6e-08 Score=89.65 Aligned_cols=61 Identities=11% Similarity=-0.044 Sum_probs=52.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC---cceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKME---SNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
.+...+.+.|++++|+..++++++..|+++ ..+..++.++...|++++|..+++.+....+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456678899999999999999999988654 6888999999999999999999998876543
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=6.3e-06 Score=81.13 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=94.9
Q ss_pred HHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHH
Q 036160 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340 (601)
Q Consensus 261 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 340 (601)
.-+-..|+.+.|..+|..... |-++++..|-.|+.++|-.+-++- .|....-.+.+.|-..|++.+|..
T Consensus 920 qYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 920 QYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred HHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHH
Confidence 333445555555555554433 233444445555555555544432 233334445555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh-------------h--cCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036160 341 CFRKMRLEGIKSNEFTLASCLNG-------------C--SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405 (601)
Q Consensus 341 ~~~~m~~~~~~p~~~~~~~ll~~-------------~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (601)
.|.+.+. |...|+. + +...+.-.|-++|++.- . ...--+..|.+.|.+
T Consensus 989 FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 989 FFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcch
Confidence 6654432 1111111 1 11222333344444321 1 112344567778888
Q ss_pred HHHHHHHcC-------------CC-CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH----------cC-----------
Q 036160 406 DDAEAVFKG-------------SA-LRDTASWNMMIGGYVKHGLGEKALEAFRMMLD----------EG----------- 450 (601)
Q Consensus 406 ~~A~~~~~~-------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----------~~----------- 450 (601)
.+|+++--+ +. ..|+...+.-..-++.+.++++|..++-..++ .|
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhc
Confidence 777765311 11 23555666666666666677777666544321 01
Q ss_pred -----CCCCHh----hHHHHHHHhhccCcHHHHHHHHHHH
Q 036160 451 -----YVPDEI----TFVVVLSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 451 -----~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~ 481 (601)
-.|+.. ....+...|.++|.+..|-+-|-+.
T Consensus 1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 122322 3455567778888887777665543
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.1e-06 Score=80.57 Aligned_cols=438 Identities=12% Similarity=0.041 Sum_probs=222.2
Q ss_pred HHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChh
Q 036160 24 NGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLAD 103 (601)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (601)
.+....|+++.|+.+|-..+... ++|...|..-..+++..|++++|.+=-..-++.. +....-|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 45567899999999999988765 4588889999999999999999887777666644 225678999999999999999
Q ss_pred HHHHHHhcCCC--C-CccchHHHHHHHHhcCChhHH-HHHHHH--HHHcCCCCCh--------hhHHHHHHHHhccCCcc
Q 036160 104 NALKVFYRIKD--P-DVVAWGAIITCLDQQGCCQEA-AKIFNL--MRESSVKPNQ--------FVLTSLVRATTETGDQR 169 (601)
Q Consensus 104 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a-~~~~~~--m~~~~~~p~~--------~~~~~ll~~~~~~~~~~ 169 (601)
+|+.-|.+-.+ | +...++.+..++. .+.+ -+.|.. |. .++.-++ .+|..++...-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~-~~l~~~p~t~~~~~~~~~~~~l~~~~~~---- 158 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAADQLFTKPYFH-EKLANLPLTNYSLSDPAYVKILEIIQKN---- 158 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHhhhhccCcHHH-HHhhcChhhhhhhccHHHHHHHHHhhcC----
Confidence 99999988775 3 3344555555541 1111 111100 00 0011111 1122222221110
Q ss_pred hhhHHHHHHHHHCCCCchhHH---HHHHHHHHhcCCccH-HHHHHhhcCC---CCcccHHHHHHHHhcCCCchhHHHHHH
Q 036160 170 CGESIHAVICKYGFESDTLVG---NALVSMYMENGRVSY-GSRVFEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFY 242 (601)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~-a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 242 (601)
+.+...| ..++.+.......+. ....-..+.. .++. .+. ........
T Consensus 159 --------------p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~---------~~~---~~~~~~~~ 212 (539)
T KOG0548|consen 159 --------------PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC---------KQE---HNGFPIIE 212 (539)
T ss_pred --------------cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc---------ccc---CCCCCccc
Confidence 0000000 001111100000000 0000000000 0000 000 00000000
Q ss_pred HHHHC-CCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCc--
Q 036160 243 QMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL-- 319 (601)
Q Consensus 243 ~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 319 (601)
++.+. ...--..-...+.++..+..+++.+.+-+....... .+..-++.....|...|....+....+...+..-
T Consensus 213 d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 213 DNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 00000 000011223334444445555555555555555443 3333344455555655555555444333222110
Q ss_pred -ccHHH-------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhH
Q 036160 320 -FAYTA-------IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391 (601)
Q Consensus 320 -~~~~~-------ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 391 (601)
.-|+. +..+|.+.++++.++..|.+.......|+..
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l------------------------------------ 334 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL------------------------------------ 334 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH------------------------------------
Confidence 01111 2234455566666666666644433332211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCC--CCCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhcc
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSA--LRDT-ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 468 (601)
.+....+++....+... .|.. .-...-...+.+.|++..|+..|.++++.. +-|...|....-+|.+.
T Consensus 335 --------s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 335 --------SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL 405 (539)
T ss_pred --------HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Confidence 11111222222221111 1111 011112556788999999999999999974 34556899999999999
Q ss_pred CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhc-CChhHHHHH
Q 036160 469 GLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWH-GNIELDEKD 545 (601)
Q Consensus 469 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~ 545 (601)
|.+..|++-.+..++. .|+ ...|.-=+.++.-..++++|.+.|++ +...|+..-+..-+.-|... ......+++
T Consensus 406 ~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred hhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHH
Confidence 9999999988877764 455 45555556666677789999999998 55677655444444444432 223344555
Q ss_pred HHH
Q 036160 546 AEK 548 (601)
Q Consensus 546 ~~~ 548 (601)
.++
T Consensus 483 ~~r 485 (539)
T KOG0548|consen 483 KRR 485 (539)
T ss_pred HHh
Confidence 555
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=1.8e-08 Score=81.75 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=80.4
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCC
Q 036160 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKL 519 (601)
Q Consensus 441 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~ 519 (601)
.++++..+ +.|+. +..+..++...|++++|...|+..... -+.+...+..++.++.+.|++++|...|++ +..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34445444 24443 344556667777777777777776643 223466677777777777777777777776 334
Q ss_pred CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 520 TP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 520 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
.| +...+..++.++...|++++|+..++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55 66777777777777777777777777777777777777766655543
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=1e-06 Score=77.56 Aligned_cols=291 Identities=13% Similarity=0.073 Sum_probs=195.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHH---HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHhhcCCCc
Q 036160 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII---TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS-CLNGCSPVAT 369 (601)
Q Consensus 294 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~ 369 (601)
+...+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.-+.+..+ .+||...-.. --..+.++|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 444555566677777777666666666655543 356666666667666666655 3555432211 1123456777
Q ss_pred hhhHHHHHHHHHHhCCCCc--h------------hHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHh
Q 036160 370 LANGRLLHSIAVKTGHLLD--M------------FVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVK 432 (601)
Q Consensus 370 ~~~a~~~~~~~~~~~~~~~--~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 432 (601)
++.|..=|+....+..... . ......+..+...|+...|++....+. +.+...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 7777777776665532111 1 111223344556788888888887655 5588888888999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhH----HHHH---H------H
Q 036160 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH----FACM---I------D 499 (601)
Q Consensus 433 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---~------~ 499 (601)
.|++..|+.-++...+.. ..+..++.-+-..+...|+.+..+...++-. .+.||... |..| . .
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877742 3344566666677788899888887776665 45777432 2211 1 2
Q ss_pred HHHhcCChHHHHHHhHh-cCCCCcH-----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCCh
Q 036160 500 ILGRAGKFTEIENFITE-TKLTPNA-----LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRW 573 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~-~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 573 (601)
...+.++|-++++--++ |...|.. ..+..+-.++...|++.+|++...++++++|+|..++.--+.+|.....+
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 23455677777777666 5556652 23334445556778999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCcC
Q 036160 574 NDFSGVRALLSSQGIKK 590 (601)
Q Consensus 574 ~~A~~~~~~~~~~~~~~ 590 (601)
++|+.=|+...+.+...
T Consensus 358 D~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHhcCccc
Confidence 99999999887765543
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=1.7e-08 Score=81.94 Aligned_cols=109 Identities=7% Similarity=-0.098 Sum_probs=94.1
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 476 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
..+++..+ +.|+ .+..+...+...|++++|...|+. +...| +...|..++.++.+.|++++|+..++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3455 355678899999999999999998 45666 78899999999999999999999999999999
Q ss_pred CCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 554 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
|+++.++..++.++...|++++|+..|+...+..+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999876654
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=8.2e-07 Score=76.58 Aligned_cols=409 Identities=13% Similarity=0.053 Sum_probs=209.5
Q ss_pred HHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC--CCcccHHH-HHHHHhcCC
Q 036160 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNA-LFSRFQDYE 232 (601)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-li~~~~~~~ 232 (601)
.+++..+.+..++..|++++..-.+.. +.+....+.|..+|-+..++..|...++++.. |...-|.. -...+.+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 333333344444444444444433332 22344444455555555555555555555543 22222221 123445556
Q ss_pred CchhHHHHHHHHHHCCCCCCHhhHHHHHHH--hcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHH
Q 036160 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKA--CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310 (601)
Q Consensus 233 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 310 (601)
.+.+|+++...|.+. |+...-..-+.+ ....+++..+..+.++.... .+..+.+.......+.|+.+.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 666666666665543 222221111222 22455555665555554321 2333444455556677888888888
Q ss_pred HhhCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHhhcCCCchhhHHHHHHHHHHhCC
Q 036160 311 FDSLANK----DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL-ASCLNGCSPVATLANGRLLHSIAVKTGH 385 (601)
Q Consensus 311 ~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 385 (601)
|....+- ....||..+.. .+.|+++.|++...+++++|++..+..= .....+ .....+.....+....
T Consensus 167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSA----- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHH-----
Confidence 7776542 34566665544 4567889999999999888865322110 000000 0000000001111000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC-----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHH
Q 036160 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-----DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFV 459 (601)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 459 (601)
-+..+|.-...+.+.++++.|.+-+-.|+++ |++|...+.-.- -.+++....+-++-+... .|- ..||.
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFA 314 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFA 314 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHH
Confidence 1123344445567889999999999999854 666665543322 234555566666666653 443 35899
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChHHHHHHhHhcCCCCcHHHHHHHHHHH-HhcC
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG-RAGKFTEIENFITETKLTPNALVWENLLGAC-SWHG 537 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~g 537 (601)
.++-.||+..-++.|..++.+-....=.-.+...|+ |++++. -.-..++|.+-+..+...--.......+..- .+..
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998888643211100011233343 334443 3446677776666543111111111112211 1111
Q ss_pred C----hhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 538 N----IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 538 ~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
+ ...|++-+++.+++.- .+....+++|++..++.-+.+.|..-.+..
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 1 2234445555555431 256677889999999999999998665543
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=4.2e-06 Score=72.36 Aligned_cols=312 Identities=12% Similarity=0.026 Sum_probs=174.9
Q ss_pred HhhHHHHhhcCCChhHHHHHHhcCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHhc
Q 036160 89 SCSLVDMYSKCGLADNALKVFYRIKD--P-DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS-LVRATTE 164 (601)
Q Consensus 89 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~ 164 (601)
+.+.+..+.+..++++|++++....+ | +....+.|..+|....++..|-+.|+++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 44555555666666666666655544 2 3344555556666777777777777776553 444444432 2344555
Q ss_pred cCCcchhhHHHHHHHHHCCCCchhHHHHHH--HHHHhcCCccHHHHHHhhcCC-CCcccHHHHHHHHhcCCCchhHHHHH
Q 036160 165 TGDQRCGESIHAVICKYGFESDTLVGNALV--SMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIF 241 (601)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 241 (601)
.+.+..|.++...|.+. ++...-..-+ ...-..+++..+..+.++.+. .+..+.+.......+.|+++.|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 66677777776666432 2211111111 122346788888888888874 55555566666677889999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchh----hHHHHHHHhcCCHH-HHHHHHhhCCC
Q 036160 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG----TSLVDMYDKSGCLE-DAGVAFDSLAN 316 (601)
Q Consensus 242 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-~a~~~~~~~~~ 316 (601)
....+-|--.....|+..+..| +.++.+.|.+...+++++|+...+..- +..++.- ..|+.. .+..-
T Consensus 168 qaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sa------ 239 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSA------ 239 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHHHH------
Confidence 8887764333456676665544 567888899999999888865332210 0000000 000000 00000
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHH
Q 036160 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395 (601)
Q Consensus 317 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 395 (601)
=+..+|.-...+.+.|+++.|.+.+.+|--+. ...|++|...+.-. -..+++....+-+..+...+. ....++..+
T Consensus 240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 01224444445567788888887777774332 23455665443221 112333344444444444432 445677777
Q ss_pred HHHHHhcCCHHHHHHHHcCCC
Q 036160 396 VAMYAKCGSIDDAEAVFKGSA 416 (601)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~~~ 416 (601)
+-.||++.-++-|..++-+-.
T Consensus 317 LllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCc
Confidence 778888888888877776543
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=3.2e-06 Score=81.66 Aligned_cols=257 Identities=11% Similarity=-0.022 Sum_probs=151.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH---HHHhhcCCCchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcC
Q 036160 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS---CLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCG 403 (601)
Q Consensus 328 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 403 (601)
.+...|++++|.+.+++..+.. +.+...+.. ........+....+.+.+.. .....|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4556788888888888877652 222323321 11111223444444444433 1122222 334445667788889
Q ss_pred CHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH--hhHHHHHHHhhccCcHHHHHHH
Q 036160 404 SIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY-VPDE--ITFVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 404 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 477 (601)
++++|.+.+++.. +.+...+..+...+...|++++|...+++.....- .|+. ..|..+...+...|++++|...
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999988888655 44566778888889999999999999988877421 1232 2355677788899999999999
Q ss_pred HHHHHHHhCCCCChhHH-H--HHHHHHHhcCChHHHHHH--h-Hhc-CCCCc-HHHH--HHHHHHHHhcCChhHHHHHHH
Q 036160 478 FSSIKKIYGITPTIKHF-A--CMIDILGRAGKFTEIENF--I-TET-KLTPN-ALVW--ENLLGACSWHGNIELDEKDAE 547 (601)
Q Consensus 478 ~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~-~~~~--~~l~~~~~~~g~~~~A~~~~~ 547 (601)
++.........+..... . .++..+...|..+.+.+. + ... ...|. ...+ .....++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 98875431111121111 1 233334444533333222 1 111 11111 1112 245566778899999999998
Q ss_pred HHHhcCCC---------CCcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 548 KLLELEPK---------MESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 548 ~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
.+....-. ........+.++...|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88763321 12333456677889999999999988776543
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.77 E-value=0.00018 Score=67.90 Aligned_cols=174 Identities=13% Similarity=0.043 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHc
Q 036160 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFK 413 (601)
Q Consensus 335 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 413 (601)
.+....+++++...-..--..+|...|+...+..-+..|+.+|..+.+.+..+ .+.++.+++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666677776654333334567777888888888889999999998887766 78888889987775 67888999998
Q ss_pred CCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHhhccCcHHHHHHHHHHHHHHhC--
Q 036160 414 GSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE--ITFVVVLSACSHMGLIEEGKKHFSSIKKIYG-- 486 (601)
Q Consensus 414 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 486 (601)
-.. ..++.--...+.-+...++-..+..+|++....++.|+. ..|...+.--+.-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 665 234445566777888889999999999999998777776 4899999888899999999999888776643
Q ss_pred CCCChhHHHHHHHHHHhcCChHH
Q 036160 487 ITPTIKHFACMIDILGRAGKFTE 509 (601)
Q Consensus 487 ~~p~~~~~~~l~~~~~~~g~~~~ 509 (601)
..+....-..+++.|.-.+....
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 33333444556666666665443
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=5.8e-07 Score=76.58 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=108.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036160 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503 (601)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 503 (601)
..+-..+...|+-+....+....... ..-|......++....+.|++.+|...+++... .-++|...|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666667777776666654432 122333444566777777888888888777765 345667778888888888
Q ss_pred cCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHH
Q 036160 504 AGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 504 ~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 581 (601)
.|++++|..-+.+ +.+.| ++...+.++..+.-.||++.|+.++..+....+.++.+-.+++.+....|++++|..+-.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888777766 44555 567777777777788888888888888877777777777788888888888887777644
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=6.6e-07 Score=91.19 Aligned_cols=129 Identities=18% Similarity=0.052 Sum_probs=74.6
Q ss_pred CCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHH
Q 036160 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENL 529 (601)
Q Consensus 453 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l 529 (601)
.+...+..|.....+.|++++|..+++...+. .|+ ......++..+.+.+++++|+..+++ +...| +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 33455555555566666666666666655532 454 44455555666666666666666655 33445 34455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
..++.+.|++++|+.+|++++...|+++.++..++.++...|+.++|...|++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555666666666666666666556556666666666666666666666666554
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=6.9e-07 Score=92.58 Aligned_cols=199 Identities=14% Similarity=0.101 Sum_probs=161.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC--------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-hh
Q 036160 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALR--------DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-IT 457 (601)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~ 457 (601)
.+...|-..|......++.+.|.+++++.... -...|-++++.-...|.-+...++|+++.+. -|+ ..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHH
Confidence 34556666677777788888888888765421 2346888888888888888889999999873 344 46
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC---cHHHHHHHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP---NALVWENLLGAC 533 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p---~~~~~~~l~~~~ 533 (601)
|..|...|.+.+.+++|.++++.|.++++ .....|..+++.+.++.+-+.|.+++.+ |..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888899999999999999999999865 5677888899999999999999999987 55444 355666667777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
.+.||.++++.+|+..+...|.....|..++..-.+.|+.+.++.+|+++...+..+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999998766543
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=2.1e-05 Score=79.34 Aligned_cols=260 Identities=13% Similarity=0.018 Sum_probs=150.3
Q ss_pred cccHHHHHHHHHh----cC----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchh
Q 036160 319 LFAYTAIITSYAQ----AG----EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390 (601)
Q Consensus 319 ~~~~~~ll~~~~~----~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 390 (601)
..+|..+...|.+ .| +...|+..+.+.++. ..|...+-..+...+..|++.-+..-|-...... +....
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchh
Confidence 4555555544433 22 223566777766553 3444444455555566677766665554443332 33556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCCHhhHHHHHH
Q 036160 391 VSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLD----EGYVPDEITFVVVLS 463 (601)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~~l~~ 463 (601)
+|..+.-.+.+..+++.|...|.... +.|...|-.........|+.-++..+|..-.+ .|--|+..-+.....
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 67777777888899999999987655 45777787776667778888888888876222 233344333333333
Q ss_pred HhhccCcHHHHHHHHHHHHH-------Hh-CCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-C---CCCcHHHHH----
Q 036160 464 ACSHMGLIEEGKKHFSSIKK-------IY-GITPTIKHFACMIDILGRAGKFTEIENFITET-K---LTPNALVWE---- 527 (601)
Q Consensus 464 ~~~~~~~~~~a~~~~~~~~~-------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~~~~---- 527 (601)
-....|+.++-+...+.+-. -+ +.+.+...|.+.+..+.+.+.+.+|.+...++ + .+-|...|+
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 34455655544333332211 01 33444778888888888888888888877662 1 223333443
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
.+++.+...|+++.|.......-...-++ .........-.++++++.+.|++..
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~evdEd---i~gt~l~lFfkndf~~sl~~fe~aL 1065 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWMEVDED---IRGTDLTLFFKNDFFSSLEFFEQAL 1065 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccchhHHHH---HhhhhHHHHHHhHHHHHHHHHHHHh
Confidence 55666777888886655443221110000 0011112256788999999988775
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=2e-06 Score=83.67 Aligned_cols=211 Identities=14% Similarity=0.043 Sum_probs=148.1
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC--CCCHhHHHHHHHHHHhCCChH
Q 036160 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGE 437 (601)
Q Consensus 360 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 437 (601)
+...+.+.|-...|..+++.+. .+...+.+|+..|+..+|..+..+.. +|++..|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3334445555666666665433 33456666777776666666554322 456666666666655555566
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
+|.++.+..... .-..+.....+.++++++.+.|+.-.+. .| -..+|-.+.-+..+.++++.|...|..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 666666543321 1111222233457777777777765543 33 366788888888899999999999987
Q ss_pred -cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 517 -TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 517 -~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
....| +...||++..+|.+.|+..+|...++++++-+-++...|.+...+...-|.|++|.+.+.++.+....
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 66778 57899999999999999999999999999999889999999999999999999999999998764443
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.72 E-value=1.2e-06 Score=75.20 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=116.3
Q ss_pred HHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHH
Q 036160 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475 (601)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 475 (601)
+-.|...|+++.+....+....+. ..+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777888777655543322221 01223567788888888888753 455668999999999999999999
Q ss_pred HHHHHHHHHhCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036160 476 KHFSSIKKIYGITP-TIKHFACMIDIL-GRAGK--FTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKL 549 (601)
Q Consensus 476 ~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 549 (601)
..+++..+. .| +...+..+..++ ...|+ .++|.+++++ +...| +...+..++..+...|++++|+..++++
T Consensus 94 ~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998865 45 477888888874 67777 5999999998 55677 7789999999999999999999999999
Q ss_pred HhcCCCCCc
Q 036160 550 LELEPKMES 558 (601)
Q Consensus 550 ~~~~p~~~~ 558 (601)
++..|.+..
T Consensus 171 L~l~~~~~~ 179 (198)
T PRK10370 171 LDLNSPRVN 179 (198)
T ss_pred HhhCCCCcc
Confidence 999986543
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=5.1e-07 Score=87.54 Aligned_cols=189 Identities=15% Similarity=0.089 Sum_probs=160.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 036160 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463 (601)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 463 (601)
+++|-...-..+...+...|-...|..+|++. ..|.-.+.+|+..|+..+|..+..+-.+ -+|++.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566677889999999999999999975 4677788899999999999999988887 3889999999999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhH
Q 036160 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 464 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 541 (601)
......-+++|.++.+....+ .-..+.....+.++++++.+.|+. +.+.| ...+|..++.+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998765432 223334444568999999999997 77777 78999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 542 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
|.+.|...+.++|++...|.+++.+|.+.|+..+|...+.+..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999876543
No 114
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=4.5e-06 Score=77.17 Aligned_cols=182 Identities=12% Similarity=0.025 Sum_probs=125.4
Q ss_pred HHhcC-CHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcH
Q 036160 399 YAKCG-SIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLG--EKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLI 471 (601)
Q Consensus 399 ~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~ 471 (601)
+...| .+++++..++++. +.+..+|+.....+.+.|+. ++++.+++++.+. .| |..+|+....++...|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhH
Confidence 33334 4566666665544 33555666555555555553 6778888888874 44 456788888888888899
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CCh----HHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc----CC
Q 036160 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRA---GKF----TEIENFITE-TKLTP-NALVWENLLGACSWH----GN 538 (601)
Q Consensus 472 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~----g~ 538 (601)
+++++.++++++. + ..+...|+....++.+. |.. ++++++..+ +...| |...|+.+...+... ++
T Consensus 159 ~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 159 EDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 9999999998876 2 33456666666555554 222 456666644 56677 678888888888773 34
Q ss_pred hhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC------------------ChhhHHHHHHHHH
Q 036160 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQG------------------RWNDFSGVRALLS 584 (601)
Q Consensus 539 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 584 (601)
..+|.....++....|+++.+...|+.+|.... ..++|.++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 567888889988888988888889999988632 3467888888884
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=1e-05 Score=88.70 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=136.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHhhcCCCchhhHHHHHHHHHHh----CCC-CchhHHHHHHHH
Q 036160 328 SYAQAGEAEMALKCFRKMRLEGIKSNE----FTLASCLNGCSPVATLANGRLLHSIAVKT----GHL-LDMFVSTALVAM 398 (601)
Q Consensus 328 ~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 398 (601)
.+...|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |.. ........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344677777777777766543111111 12333444455677777777776665542 111 112233445556
Q ss_pred HHhcCCHHHHHHHHcCCC-------CC----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC--HhhHHHHHH
Q 036160 399 YAKCGSIDDAEAVFKGSA-------LR----DTASWNMMIGGYVKHGLGEKALEAFRMMLDE--GYVPD--EITFVVVLS 463 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~~~~~l~~ 463 (601)
+...|++++|...+++.. .+ ....+..+...+...|++++|...+++.... ...+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 667777777776654322 10 1122334445566667777777777666542 11121 123334455
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhHH-----HHHHHHHHhcCChHHHHHHhHhcCC-C-CcH----HHHHHHHHH
Q 036160 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHF-----ACMIDILGRAGKFTEIENFITETKL-T-PNA----LVWENLLGA 532 (601)
Q Consensus 464 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~ 532 (601)
.+...|++++|.+.++..............+ ......+...|+.+.|.+.+..... . ... ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 5666777777777777664431111111101 0112334456777777777665321 1 111 113345566
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC------CCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 533 CSWHGNIELDEKDAEKLLELEPK------MESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
+...|++++|...++++++.... ...++..++.++...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777777764221 122445566777777777777777776654
No 116
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=9.2e-07 Score=81.65 Aligned_cols=191 Identities=12% Similarity=0.068 Sum_probs=142.8
Q ss_pred HHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccC
Q 036160 395 LVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHG-LGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMG 469 (601)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~ 469 (601)
+-..+...++.++|..+..++. +.+..+|+....++...| ++++++..++++.+. .|+. .+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 3344455677788888887665 335556776666677777 679999999999985 4444 46665555555666
Q ss_pred cH--HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc---CCh---
Q 036160 470 LI--EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWH---GNI--- 539 (601)
Q Consensus 470 ~~--~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~---g~~--- 539 (601)
+. +++..+++.+.+. -+-+..+|.....++.+.|+++++++.+++ +...| |...|+....++.+. |..
T Consensus 121 ~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 53 6788888888765 234578888889999999999999999998 44556 778888888777655 323
Q ss_pred -hHHHHHHHHHHhcCCCCCcceeehhhhhhh----cCChhhHHHHHHHHHhcCCc
Q 036160 540 -ELDEKDAEKLLELEPKMESNYVFPSDISAT----QGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 540 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 589 (601)
+++++...++++.+|+|..+|..+..++.. .++..+|.+...+..+.+++
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 578888889999999999999999999988 45667898888887665543
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=1.1e-06 Score=75.00 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=113.4
Q ss_pred CCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CC-CCcHHHHHHH
Q 036160 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KL-TPNALVWENL 529 (601)
Q Consensus 452 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l 529 (601)
.|+......+-.++...|+-+....+...... ..+.|......++....+.|++.+|+..+++. .. +||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 56544336666778888988888888776543 23445667777999999999999999999983 33 5589999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
+.+|.+.|+++.|...+.+++++.|+++.+..+++-.|.-.|+++.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998876544
No 118
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=4.3e-05 Score=73.82 Aligned_cols=264 Identities=15% Similarity=0.062 Sum_probs=164.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHH-HHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHH---
Q 036160 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLAS-CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA--- 394 (601)
Q Consensus 320 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 394 (601)
..|..+...+...|+.+.+...+.+...... .++...... ....+...|+++.+..+++...+... .+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhHH
Confidence 3455556666677778877666666544321 223322221 22235678899999999998887642 23333331
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCc
Q 036160 395 LVAMYAKCGSIDDAEAVFKGSALR---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGL 470 (601)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~ 470 (601)
........+..+.+.+.++..... .......+...+...|++++|.+.+++..+. .|+ ...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCC
Confidence 122222345666666666543322 3344556667889999999999999999985 454 4577888889999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChHHHHHHhHhcC-CCCcHHHH----H--HHHHHHHhcCChhH
Q 036160 471 IEEGKKHFSSIKKIYGITPTI--KHFACMIDILGRAGKFTEIENFITETK-LTPNALVW----E--NLLGACSWHGNIEL 541 (601)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~----~--~l~~~~~~~g~~~~ 541 (601)
+++|...+++........|+. ..|..+...+...|++++|...+++.. ..|....+ + .+..-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887642222332 345578899999999999999999842 23311111 1 22333344555444
Q ss_pred HHHH---HHHHHhcCCCCC--cceeehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 542 DEKD---AEKLLELEPKME--SNYVFPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 542 A~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
+.+. ........|... ....+.+.++...|+.++|...++.+...
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4443 222111112211 11125677788899999999999998753
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.2e-05 Score=67.06 Aligned_cols=252 Identities=12% Similarity=0.095 Sum_probs=155.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhH
Q 036160 296 DMYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373 (601)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 373 (601)
+-+.-.|.+..++..-..... .++..-.-+-++|...|.+..... ++... -.|....+..+-......++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHHH
Confidence 334445666665554443322 223333334556666666544332 22222 234444444444444444544443
Q ss_pred H-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 036160 374 R-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452 (601)
Q Consensus 374 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 452 (601)
. ++.+.+.......+......-...|++.|++++|.+...... +......=...+.+..+.+-|.+.+++|.+ -
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---i 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---I 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c
Confidence 3 334444444444443333444556888899999999888743 333333334456677788999999999986 2
Q ss_pred CCHhhHHHHHHHhhc----cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHH
Q 036160 453 PDEITFVVVLSACSH----MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVW 526 (601)
Q Consensus 453 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~ 526 (601)
.+..|.+-|..++.+ .+.+.+|.-+|++|.++ ..|++.+.+..+.++...|++++|..++++ +...+ ++.++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 355677777777654 34688899999998764 678888888888888899999999999888 33333 67777
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCc
Q 036160 527 ENLLGACSWHG-NIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 527 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~ 558 (601)
..++-.-...| +.+--.+...++....|+++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 66665555555 556677888888888886643
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.64 E-value=1.4e-07 Score=74.70 Aligned_cols=97 Identities=5% Similarity=-0.085 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHhcC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITETK-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
....-.+...+...|++++|..+|+-+. +.| +...|-.|+.+|...|++++|+..|.++..++|++|.++.+++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555667788889999999999999843 677 77888999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHhcC
Q 036160 569 TQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 569 ~~g~~~~A~~~~~~~~~~~ 587 (601)
..|+.+.|++.|+......
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887543
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=0.00012 Score=80.57 Aligned_cols=328 Identities=12% Similarity=-0.026 Sum_probs=203.7
Q ss_pred HHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCC------CC--cchhhHHHHHH
Q 036160 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD------GN--HVVGTSLVDMY 298 (601)
Q Consensus 227 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~ 298 (601)
.....|+++.+...+..+.......+..........+...|+++.+..++......--. +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456666666666655422111112222233344456778999999888877553111 11 11122233456
Q ss_pred HhcCCHHHHHHHHhhCCC----CCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---C--CHHHHHHHHHhhc
Q 036160 299 DKSGCLEDAGVAFDSLAN----KDL----FAYTAIITSYAQAGEAEMALKCFRKMRLEGIK---S--NEFTLASCLNGCS 365 (601)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~----~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~ll~~~~ 365 (601)
...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....-. + ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678999999988877543 121 23445556677899999999999887643111 1 1234445566678
Q ss_pred CCCchhhHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHcCCCC------C--CHhHHHHHHHHH
Q 036160 366 PVATLANGRLLHSIAVKT----GHL--L-DMFVSTALVAMYAKCGSIDDAEAVFKGSAL------R--DTASWNMMIGGY 430 (601)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~ 430 (601)
..|+++.|...+...... +.. + ....+..+...+...|++++|...+++... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988776652 221 1 223344566677788999999888875431 1 233455566778
Q ss_pred HhCCChHHHHHHHHHHHHcCCC-CCHhhH-----HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh----HHHHHHHH
Q 036160 431 VKHGLGEKALEAFRMMLDEGYV-PDEITF-----VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK----HFACMIDI 500 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~ 500 (601)
...|++++|...+++.....-. .....+ ...+..+...|+.+.|.+.+...... . ..... .+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHH
Confidence 8999999999999887652111 111111 11223445578999999887665321 1 11111 13467788
Q ss_pred HHhcCChHHHHHHhHhc-------CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 501 LGRAGKFTEIENFITET-------KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 501 ~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
+...|++++|...+++. +..+ ...++..+..++.+.|+.++|...+.+++++....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 89999999999998873 2222 23456677788899999999999999999987643
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.00086 Score=67.55 Aligned_cols=533 Identities=11% Similarity=0.047 Sum_probs=269.3
Q ss_pred HhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHh--ccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChh
Q 036160 26 YAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA--NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLAD 103 (601)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (601)
....+++..|+....++.++. |+. .|..++.++. +.|+.++|..+++.....+.. |..|...+-..|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 456789999999999988753 443 4566666654 899999999888887766544 8889999999999999999
Q ss_pred HHHHHHhcCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC-Cc---------chh
Q 036160 104 NALKVFYRIKD--PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG-DQ---------RCG 171 (601)
Q Consensus 104 ~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~---------~~a 171 (601)
+|..++++... |+......+.-+|++.+++.+-.+.--+|.+. .+-++..|=++++...... .. .-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999999987 66555556667888888887665555555442 4445666666666654332 11 123
Q ss_pred hHHHHHHHHHC-CCCchhHHHHHHHHHHhcCCccHHHHHHh-hc----CCCCcccHHHHHHHHhcCCCchhHHHHHHHHH
Q 036160 172 ESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFE-AI----AHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245 (601)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 245 (601)
.+..+.+++.+ ---+..-...-...+...|++++|..++. .. ..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444433 11111112222334455677888888772 22 22233334455666777788888888888877
Q ss_pred HCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCC-CcccHHH
Q 036160 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK-DLFAYTA 324 (601)
Q Consensus 246 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 324 (601)
.+| +|. |...+.. +++.+......|-... +...+..+...+..++.... .-.+|-+
T Consensus 254 ~k~--~Dd--y~~~~~s------------v~klLe~~~~~~a~~~-------~s~~~~l~~~~ek~~~~i~~~~Rgp~LA 310 (932)
T KOG2053|consen 254 EKG--NDD--YKIYTDS------------VFKLLELLNKEPAEAA-------HSLSKSLDECIEKAQKNIGSKSRGPYLA 310 (932)
T ss_pred HhC--Ccc--hHHHHHH------------HHHHHHhcccccchhh-------hhhhhhHHHHHHHHHHhhcccccCcHHH
Confidence 775 232 3222221 1111111111111110 11112222222222222111 1122322
Q ss_pred HHHHHH---hcCChhHHHHHHHHHHHcCCCC-------------CHHHHHHHHHhhcCCCc-hhhHHHHHHH----HH--
Q 036160 325 IITSYA---QAGEAEMALKCFRKMRLEGIKS-------------NEFTLASCLNGCSPVAT-LANGRLLHSI----AV-- 381 (601)
Q Consensus 325 ll~~~~---~~g~~~~a~~~~~~m~~~~~~p-------------~~~~~~~ll~~~~~~~~-~~~a~~~~~~----~~-- 381 (601)
-+.++. .-|+.++++..|-+- -|..| +......++..+....+ .....+.... +.
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~ 388 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLL 388 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHH
Confidence 232222 346666654443221 11111 11122233333322211 1111111110 00
Q ss_pred -HhCC--CCchhHHH----HHHHHHHhcCCHHHHHHHHcCCCCC-----C---HhHHHHHHHHHHhCCChH---HHHHHH
Q 036160 382 -KTGH--LLDMFVST----ALVAMYAKCGSIDDAEAVFKGSALR-----D---TASWNMMIGGYVKHGLGE---KALEAF 443 (601)
Q Consensus 382 -~~~~--~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~l~~~~~~~~~~~---~A~~~~ 443 (601)
-.|. ..+..... .++..|++. .++=+...+. + ..+-+.|+..+-+.++.. +|+-++
T Consensus 389 rl~G~~~~l~ad~i~a~~~kl~~~ye~g------ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LL 462 (932)
T KOG2053|consen 389 RLLGLYEKLPADSILAYVRKLKLTYEKG------LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLL 462 (932)
T ss_pred HHhhccccCChHHHHHHHHHHHHHHhcc------ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0010 11111111 111111111 0000011111 1 123566777888888765 344444
Q ss_pred HHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-C-CCC
Q 036160 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-K-LTP 521 (601)
Q Consensus 444 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p 521 (601)
+.-.... +-|..+-..+++.|+-.|-...|.++|+.+.-+ .+..|..-|- +...+...|++..+...++.. . ...
T Consensus 463 E~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 463 ENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred HHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 4444431 233445567788888889999999998888655 6666644443 345566778888888887762 2 122
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----CcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCCCceeEE
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM----ESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 597 (601)
+..--..++....+.|.+.+-.++..---.+.-.. ..+-......+...++.++-...++.|. -++.+..+.|.
T Consensus 540 ~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~--l~~~e~~I~w~ 617 (932)
T KOG2053|consen 540 SLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK--LPPSEDRIQWV 617 (932)
T ss_pred hhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc--cCcchhhcccc
Confidence 22222233444456666655554443222222211 1111123444555666666666666553 23334455555
Q ss_pred Ee
Q 036160 598 EV 599 (601)
Q Consensus 598 ~~ 599 (601)
.+
T Consensus 618 ~L 619 (932)
T KOG2053|consen 618 SL 619 (932)
T ss_pred cc
Confidence 43
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.1e-05 Score=75.20 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=63.8
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhhHH-HHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChH
Q 036160 431 VKHGLGEKALEAFRMMLDEGYVPDEITFV-VVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFT 508 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 508 (601)
...|++++|+..++.++.. .|+...|. .....+...++..+|.+.++++... .|+ ....-.+..+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChH
Confidence 3444555555555555443 33333222 2233445555555555555555432 333 333334455555555555
Q ss_pred HHHHHhHhc-CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 509 EIENFITET-KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 509 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
+|+.++++. .-.| |+..|..|..+|...|+..+|..... ..|...|++++|+..+....++
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 555555542 1222 44555555555555555444443322 2344456666666666665543
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=3.4e-06 Score=75.87 Aligned_cols=163 Identities=13% Similarity=0.049 Sum_probs=112.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCCC--C-CH---hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh----h
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSAL--R-DT---ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI----T 457 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~ 457 (601)
....+..+...+...|++++|...|+++.. | +. ..+..+..++.+.|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555666677777888888777775541 2 22 35566777788888888888888888774 34332 3
Q ss_pred HHHHHHHhhcc--------CcHHHHHHHHHHHHHHhCCCCCh-hHH-----------------HHHHHHHHhcCChHHHH
Q 036160 458 FVVVLSACSHM--------GLIEEGKKHFSSIKKIYGITPTI-KHF-----------------ACMIDILGRAGKFTEIE 511 (601)
Q Consensus 458 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~ 511 (601)
+..+..++... |++++|.+.++.+.+. .|+. ..+ ..+...+.+.|++++|.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44444445443 6778888888887765 3332 111 24567788999999999
Q ss_pred HHhHhc-CCCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 512 NFITET-KLTP----NALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 512 ~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
..+++. ...| ....+..++.++.+.|++++|...++.+....|+
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999983 3333 3578889999999999999999999988877663
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.59 E-value=2.9e-07 Score=74.60 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=65.5
Q ss_pred HHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CC
Q 036160 442 AFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KL 519 (601)
Q Consensus 442 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 519 (601)
.+++... ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 24433 33445555566666677777666666543 1234556666666666666666666666652 33
Q ss_pred CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 520 TP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 520 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
.| +...+..++..+...|++++|...++++++..|++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 34 455666666666666666666666666666666543
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=6.3e-08 Score=55.38 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=20.9
Q ss_pred cCCCChhHHhhHHHHhhcCCChhHHHHHHhcC
Q 036160 81 GCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112 (601)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 112 (601)
|+.||..+|+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=8.1e-08 Score=54.93 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=16.4
Q ss_pred CCCCCHhhHHHHHHHhhccCcHHHHHHHHHHH
Q 036160 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 450 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 481 (601)
|+.||..||+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555444
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.4e-05 Score=67.76 Aligned_cols=168 Identities=18% Similarity=0.152 Sum_probs=115.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHcCCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccC
Q 036160 393 TALVAMYAKCGSIDDAEAVFKGSAL--R-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469 (601)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 469 (601)
..++-+....|+.+.|...++.+.. | +...-..-...+-..|++++|+++|+.+.+.. +.|..++..-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3344445556666666666654331 2 11111111223445688889999999888864 445567766666666778
Q ss_pred cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-cHHHHHHHHHHHHhcC---ChhHHHH
Q 036160 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP-NALVWENLLGACSWHG---NIELDEK 544 (601)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~ 544 (601)
+..+|++-+....+. +..|.+.|.-+...|...|++++|.=-++++ -+.| ++..+..+...+.-.| +.+.|.+
T Consensus 135 K~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777888888888775 5778889999999999999999998888883 3567 6777777777655443 7888999
Q ss_pred HHHHHHhcCCCCCcceeeh
Q 036160 545 DAEKLLELEPKMESNYVFP 563 (601)
Q Consensus 545 ~~~~~~~~~p~~~~~~~~l 563 (601)
.|++++++.|.+...++.+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999998665555543
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=3.8e-06 Score=67.99 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=82.5
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeeh
Q 036160 487 ITPT-IKHFACMIDILGRAGKFTEIENFITET-KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563 (601)
Q Consensus 487 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 563 (601)
..|+ ......++..+...|++++|.+.+++. ...| +...+..++..+...|++++|...++++++..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3454 455666778888888899998888873 3445 677888888888888889999999998888888888888888
Q ss_pred hhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 564 SDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 564 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+.+|...|++++|...|+...+..+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 88888899999999988888775543
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=3.1e-05 Score=72.26 Aligned_cols=119 Identities=19% Similarity=0.081 Sum_probs=84.2
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc-HHHHHHHHHHHHhcCChhH
Q 036160 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPN-ALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 464 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~ 541 (601)
.+...|++++|+..++.+.+. .+-|+.......+.+.+.++.++|.+.+++ +...|+ ....-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 445567777777777777654 233355666667777777777777777777 445665 5566667777777777777
Q ss_pred HHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 542 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
|+..++..+..+|+++..|..|+.+|..+|+..+|....-+..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777665543
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=1.7e-06 Score=81.47 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=98.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHh
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSW 535 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~ 535 (601)
...|+..+...++++.|.++++++.+. .|+ ....++..+...++-.+|.+++++ +...| +...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345556666778899999999988765 355 344577888888888888888887 44455 66777777788889
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
.++++.|..+++++.+..|++-.+|..|+.+|...|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999998888664
No 132
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=6.7e-06 Score=77.97 Aligned_cols=138 Identities=14% Similarity=0.047 Sum_probs=99.8
Q ss_pred HHHHHHHHH-HHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhH
Q 036160 438 KALEAFRMM-LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFIT 515 (601)
Q Consensus 438 ~A~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 515 (601)
...++|-++ ...+..+|+.....|.-.|--.|++++|...|+.+... +|+ ..+|+-|+..++...+.++|++.++
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 344444333 44444466777777777788888999999999888754 565 6789999999999889999999998
Q ss_pred h-cCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----------CcceeehhhhhhhcCChhhHHH
Q 036160 516 E-TKLTPN-ALVWENLLGACSWHGNIELDEKDAEKLLELEPKM----------ESNYVFPSDISATQGRWNDFSG 578 (601)
Q Consensus 516 ~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~ 578 (601)
+ +.+.|. +..+..++-.|...|.+++|.+.+-.++.+.+.+ ..+|..|-.++...++.+-+.+
T Consensus 489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 8 667885 5677888888999999999999999998876651 1245555555555566554433
No 133
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=8.5e-05 Score=77.84 Aligned_cols=220 Identities=14% Similarity=0.129 Sum_probs=148.3
Q ss_pred HhhHHHHHHHhcCCCChhHHHHHHHHHHHc-cCC---CCcchhhHHHHHHHhcCCHHHHHHHHhhCCCC-Cc-ccHHHHH
Q 036160 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKH-SLD---GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK-DL-FAYTAII 326 (601)
Q Consensus 253 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~ll 326 (601)
+..|-..|......++.+.|..+.+++... ++. .-..+|.++++.-..-|.-+...++|++..+- |+ ..|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344555556666666777777766666543 111 12235666666666667777777788777653 32 4577788
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCH
Q 036160 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSI 405 (601)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 405 (601)
..|.+.+.+++|.++++.|.++ ..-....|...+..+.+..+-+.|..++.++.+.-.+ -......-.+.+-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888888888888888776 3356667777888888888888888888777765322 1234445566667778888
Q ss_pred HHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHhhccCcHHH
Q 036160 406 DDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE--ITFVVVLSACSHMGLIEE 473 (601)
Q Consensus 406 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~ 473 (601)
+++..+|+... +.-...|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|...+..--+.|+-..
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88888888766 334667888888888888888888888888888777654 245555543334454433
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=4.3e-05 Score=78.28 Aligned_cols=131 Identities=10% Similarity=0.077 Sum_probs=73.3
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFAC 496 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 496 (601)
++..+-.|.......|++++|..+|+...+ +.|+.. ....+...+.+.+++++|...+++.... .|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 344555555556666666666666666655 355543 3444555556666666666666555543 333 445555
Q ss_pred HHHHHHhcCChHHHHHHhHhcC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 497 MIDILGRAGKFTEIENFITETK-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
+..++...|++++|..+|+++. ..| +...+..++.++...|+.++|...|+++++...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 5566666666666666666532 233 245555555666666666666666666665443
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.8e-05 Score=67.07 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV-LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 500 (601)
.|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|++++|+++++.+.+. -+.|..++--=+.+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 4566777788899999999999999886 4 665433322 22355689999999999999876 24456677777777
Q ss_pred HHhcCChHHHHHHhHh-cC-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC---Chhh
Q 036160 501 LGRAGKFTEIENFITE-TK-LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG---RWND 575 (601)
Q Consensus 501 ~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 575 (601)
+-..|+.-+|++-+.+ +. +..|...|..+...|...|+++.|.-++++++=..|-++..+..++.+++..| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 7888988888888877 33 55699999999999999999999999999999999999999999999988765 4566
Q ss_pred HHHHHHHHHhcCC
Q 036160 576 FSGVRALLSSQGI 588 (601)
Q Consensus 576 A~~~~~~~~~~~~ 588 (601)
|+++|.+..+..+
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888887776544
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.37 E-value=2.6e-05 Score=63.66 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFA 495 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~ 495 (601)
.|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|+ .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 344455554 477888888888888875 3333 23334556778888999999998888876 32222 12344
Q ss_pred HHHHHHHhcCChHHHHHHhHhcCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 496 CMIDILGRAGKFTEIENFITETKLTP-NALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
.|..++...|++++|+..++...-.+ .+..+...+..+.+.|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 56778888888888888887754222 55666777788888888888888888763
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=6.1e-05 Score=64.46 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=119.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh---
Q 036160 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR--- 503 (601)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 503 (601)
...|++.|++++|++..+... +......=...+.+..+.+-|.+.+++|.+- -+..+.+.|+.++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 456889999999999987621 2222333344567888999999999999753 345566667666653
Q ss_pred -cCChHHHHHHhHhcC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHH-H
Q 036160 504 -AGKFTEIENFITETK--LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG-V 579 (601)
Q Consensus 504 -~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~ 579 (601)
.+.+.+|.-+|+++. ..|.+.+.+....++...|++++|+.+++.++..++++|.+..++...-...|+-.++.. .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 457899999999976 678999999999999999999999999999999999999999999988889998877654 4
Q ss_pred HHHHHhcCC
Q 036160 580 RALLSSQGI 588 (601)
Q Consensus 580 ~~~~~~~~~ 588 (601)
+.+++...+
T Consensus 265 l~QLk~~~p 273 (299)
T KOG3081|consen 265 LSQLKLSHP 273 (299)
T ss_pred HHHHHhcCC
Confidence 666665444
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=2.3e-06 Score=74.53 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=45.2
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCh
Q 036160 430 YVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKF 507 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 507 (601)
+.+.+++++|+..|.+.++ +.|+. +-|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 4445555555555555555 23332 3344444555555555555555444432 2343 44555555555555555
Q ss_pred HHHHHHhHh-cCCCCcHHH
Q 036160 508 TEIENFITE-TKLTPNALV 525 (601)
Q Consensus 508 ~~A~~~~~~-~~~~p~~~~ 525 (601)
++|++.|++ +.+.|+..+
T Consensus 166 ~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHHhhhccCCCcHH
Confidence 555555554 445554433
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=9.4e-05 Score=76.63 Aligned_cols=214 Identities=10% Similarity=0.029 Sum_probs=140.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 036160 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL-NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396 (601)
Q Consensus 318 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 396 (601)
+...+..|+..+...+++++|.++.+...+. .|+...+-.+. ..+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5567888999999999999999999976664 55544332222 234455554444333 122
Q ss_pred HHHHhcCCHHHHHHHHcCCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHH
Q 036160 397 AMYAKCGSIDDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 474 (601)
.......++.-+..+.+.+. ..+...+..+..+|-+.|+.++|..+|+++.+.. +-|....+.+...|+.. +.++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 22222223322222222222 1233467778889999999999999999999864 33456888888888888 99999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc----------------------CCCCcHHHHHHHHHH
Q 036160 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET----------------------KLTPNALVWENLLGA 532 (601)
Q Consensus 475 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~~~ 532 (601)
.+++.+.... +...+++.++.++|.++ +..--..++.-+...
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 9988877654 22233444444444432 222234445555567
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
|...+++++++.+++.+++.+|.|..+..-++.+|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 778889999999999999999999999888888877
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=5.2e-06 Score=65.50 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=54.3
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhc-CCCCc----HHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITET-KLTPN----ALVWENLL 530 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 530 (601)
++..+...+.+.|++++|.+.+..+.+...-.|. ...+..++.++.+.|++++|...++++ ...|+ ...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666666544111111 234444556666666666666666652 22232 34455555
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 531 GACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
.++.+.|+.++|...++++++..|+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5566666666666666666666665443
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=0.00065 Score=70.67 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=20.3
Q ss_pred CcccHHHHHHHHhcCCCchhHHHHHHHHHHC
Q 036160 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247 (601)
Q Consensus 217 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 247 (601)
+...+..|+..+...+++++|.++.+...+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~ 60 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE 60 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445666777777777777777777755544
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.25 E-value=8.7e-07 Score=61.69 Aligned_cols=65 Identities=22% Similarity=0.143 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC-ChhhHHHHHHHHHhc
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG-RWNDFSGVRALLSSQ 586 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 586 (601)
++.+|..++..+...|++++|+..++++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888888888888888888888888888888888888888888888 688888888877654
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.24 E-value=5.5e-06 Score=62.38 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC
Q 036160 494 FACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571 (601)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 571 (601)
+..++..+...|++++|...+++ +...| +...+..++..+...|++++|.+.++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44556666677777777777776 33344 34566666677777777777777777777777777767777777777777
Q ss_pred ChhhHHHHHHHHHhc
Q 036160 572 RWNDFSGVRALLSSQ 586 (601)
Q Consensus 572 ~~~~A~~~~~~~~~~ 586 (601)
++++|..+++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777766543
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.23 E-value=9.3e-07 Score=60.59 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=40.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
++..+...|++++|+..++++++..|+++.++..++.++..+|++++|..+|+++.+..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 345566677777777777777777777777777777777777777777777776665443
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.2e-06 Score=50.12 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCc
Q 036160 17 VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK 51 (601)
Q Consensus 17 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 51 (601)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888899999999999999999888888888873
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.21 E-value=0.0061 Score=58.09 Aligned_cols=161 Identities=11% Similarity=0.044 Sum_probs=119.6
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 498 (601)
..+|..+++.-.+..-...|..+|.+..+.+..+ ....+++++.-+| .++..-|.++|+.-.+.+|-. +.-....+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHH
Confidence 3468888888888888999999999999988777 5557778887666 578899999999887764433 34445678
Q ss_pred HHHHhcCChHHHHHHhHhcC---CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----cceeehhhhhhh
Q 036160 499 DILGRAGKFTEIENFITETK---LTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME----SNYVFPSDISAT 569 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~ 569 (601)
+.+...++-..|..+|++.. +.| ...+|..++..-..-||...+.++-++.....|.+- ..-..+..-|.-
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 88899999999999999842 344 457999999999999999999999999888777331 122234444555
Q ss_pred cCChhhHHHHHHHH
Q 036160 570 QGRWNDFSGVRALL 583 (601)
Q Consensus 570 ~g~~~~A~~~~~~~ 583 (601)
++++..-..-++.+
T Consensus 523 ~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 523 LDLYPCSLDELKFL 536 (656)
T ss_pred cccccccHHHHHhh
Confidence 56655544444444
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.21 E-value=2.5e-06 Score=80.98 Aligned_cols=107 Identities=13% Similarity=0.022 Sum_probs=88.8
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCC
Q 036160 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGN 538 (601)
Q Consensus 461 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~ 538 (601)
....+...|++++|++.|+++.+. .+.+...|..++.+|.+.|++++|+..+++ +.+.| +...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999875 233477888899999999999999999998 45667 67889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCcceeehhhhhhh
Q 036160 539 IELDEKDAEKLLELEPKMESNYVFPSDISAT 569 (601)
Q Consensus 539 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 569 (601)
+++|+..++++++++|+++.....+..+...
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988776665544333
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=98.18 E-value=1.9e-05 Score=63.06 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=80.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceee
Q 036160 486 GITPT-IKHFACMIDILGRAGKFTEIENFITETK-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562 (601)
Q Consensus 486 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 562 (601)
|++++ ....-....-+...|++++|..+|+-+. ..| +...|..|+.++...+++++|+..|..+..+.++||.+.++
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 2233345556678899999999998743 345 67777888888888999999999999999999999999999
Q ss_pred hhhhhhhcCChhhHHHHHHHHHh
Q 036160 563 PSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 563 l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
.+.+|...|+.++|+..|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999987765
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.4e-06 Score=49.29 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=30.7
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036160 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152 (601)
Q Consensus 118 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 152 (601)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988873
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=6e-05 Score=71.23 Aligned_cols=126 Identities=11% Similarity=0.077 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcH
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 471 (601)
..+|+..+...++++.|..+|+++...++.....++..+...++-.+|.+++++..+. .+-+...+......|.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 3456667777889999999999988777777777888888889999999999999875 233445566666778899999
Q ss_pred HHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcCCCC
Q 036160 472 EEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITETKLTP 521 (601)
Q Consensus 472 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 521 (601)
+.|.++.+++... .|+ ..+|..|+.+|...|+++.|+-.++.++..|
T Consensus 251 ~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999864 566 6799999999999999999999999876433
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=2.9e-05 Score=63.40 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=92.3
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcC-CCCcH----HHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITETK-LTPNA----LVWENLL 530 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~ 530 (601)
.|..++..+ ..++...+...++.+.+.++-.|- ....-.+...+...|++++|...|+... ..||+ .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 478899999999999886322211 2344456788899999999999999843 33443 3445567
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHH
Q 036160 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583 (601)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 583 (601)
..+...|++++|...++.. .-.+-.+..+..+|.+|...|++++|+..|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8889999999999999773 333446678889999999999999999999853
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=3.4e-06 Score=73.51 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=92.4
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCCh
Q 036160 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNI 539 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~ 539 (601)
..-+.+.++|.+|+..|...++. .+-|..-|..=..+|.+.|.++.|++-.+. +.+.| ....|..|+.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 34466789999999999999864 234477788889999999999999999987 66888 568999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChh
Q 036160 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 574 (601)
++|++.|+++++++|+|+.....|-++-...+.-+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999877666666655555444
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=2.9e-06 Score=49.10 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=25.5
Q ss_pred ccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCC
Q 036160 17 VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF 49 (601)
Q Consensus 17 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 49 (601)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888887777766
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=2.7e-05 Score=61.38 Aligned_cols=97 Identities=11% Similarity=-0.027 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHhc-CCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---Ccceeehh
Q 036160 493 HFACMIDILGRAGKFTEIENFITET-KLTPN----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKM---ESNYVFPS 564 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 564 (601)
++..++..+.+.|++++|.+.++++ ...|+ ...+..++.++.+.|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666666777777777777663 22332 2355556666777777777777777777766654 33466666
Q ss_pred hhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 565 DISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 565 ~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
.++...|++++|..+++++.+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 7777777777777777777665543
No 155
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.4e-05 Score=68.89 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=88.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc-C--ChhHHHHHHHHHHhcCCCCCcceee
Q 036160 488 TPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWH-G--NIELDEKDAEKLLELEPKMESNYVF 562 (601)
Q Consensus 488 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~p~~~~~~~~ 562 (601)
+-|...|-.|..+|...|+.+.|..-|.+ ..+.| ++..+..+..++..+ | +..++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 44588899999999999999999998887 33444 677777777766543 2 6788899999999999999999999
Q ss_pred hhhhhhhcCChhhHHHHHHHHHhcCCcCCCcee
Q 036160 563 PSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595 (601)
Q Consensus 563 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 595 (601)
|+..+...|++.+|...|+.|.+..+..+|.-+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999988887776543
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.4e-06 Score=47.96 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=26.6
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036160 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150 (601)
Q Consensus 118 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 150 (601)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888776
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.09 E-value=1.1e-05 Score=55.25 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=51.8
Q ss_pred HHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 497 MIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
++..+.+.|++++|++.|++ +...| +...+..++.++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 56778899999999999998 45567 678899999999999999999999999999999874
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=8.4e-07 Score=64.50 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=47.9
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCC-cHHHHHHHHHHHHhcCChhHHHHHH
Q 036160 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENLLGACSWHGNIELDEKDA 546 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 546 (601)
.|+++.|+.+++++.+.....|+...+..++.+|.+.|++++|..++++....| +......++.++.+.|++++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 466777777777776652211233444446777777777777777776643333 3344445566667777777777776
Q ss_pred HHH
Q 036160 547 EKL 549 (601)
Q Consensus 547 ~~~ 549 (601)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 653
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.07 E-value=0.00016 Score=71.83 Aligned_cols=142 Identities=13% Similarity=0.042 Sum_probs=100.5
Q ss_pred CCCCCHhHHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhcc--------CcHHHHHHHHHH
Q 036160 415 SALRDTASWNMMIGGYVKHG-----LGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHM--------GLIEEGKKHFSS 480 (601)
Q Consensus 415 ~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~ 480 (601)
....+...|..++++..... +.+.|..+|++..+. .|+.. .|..+..++... .+...+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34557778888777754322 367899999999984 78763 455444433221 123344444443
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 481 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
.........+...|..+.......|++++|...+++ +.+.|+...|..++..+...|+.++|.+.+++++.++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 332211333457788887777788999999999998 557889889999999999999999999999999999997764
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=3.1e-05 Score=73.61 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=81.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh
Q 036160 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGR 503 (601)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 503 (601)
-...+...|++++|+..|+++++. .|+ ...|..+..+|...|++++|+..++++.+. .| +...|..++.+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 345677889999999999999985 454 457888888999999999999999999875 45 47788899999999
Q ss_pred cCChHHHHHHhHh-cCCCCcHHHHHHHH
Q 036160 504 AGKFTEIENFITE-TKLTPNALVWENLL 530 (601)
Q Consensus 504 ~g~~~~A~~~~~~-~~~~p~~~~~~~l~ 530 (601)
.|++++|+..|++ +.+.|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999998 55777544443333
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=2e-05 Score=66.62 Aligned_cols=48 Identities=21% Similarity=0.132 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCC
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 572 (601)
.+..++..+.+.|++++|+..++++++..|+++..+..++.++...|+
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 344444444445555555555555555555444444444444444443
No 162
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.02 E-value=0.0069 Score=55.29 Aligned_cols=240 Identities=18% Similarity=0.137 Sum_probs=160.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036160 331 QAGEAEMALKCFRKMRLEGIKSNEF--TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408 (601)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (601)
-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|.++-+..-..- +.-.....+.+...|..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 467888888888887652 2222 23334444556777777777766655432 22345667788888999999999
Q ss_pred HHHHcCCC-----CCCHhH--HHHHHHHH---HhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHH
Q 036160 409 EAVFKGSA-----LRDTAS--WNMMIGGY---VKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 409 ~~~~~~~~-----~~~~~~--~~~l~~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~ 477 (601)
+++++.-. .+++.- -..|+.+- .-..+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 99887433 333321 12222221 112356667776666655 578765 444556789999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh---c-CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE---T-KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 478 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
++.+-+. .|.+..+.. ..+.+.|+ .++.-+++ + .++| +..+......+-...|++..|..-.+.+...
T Consensus 286 lE~aWK~---ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWKA---EPHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHhc---CCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 9988765 566554432 33445555 33333332 1 2455 5677777888889999999999999999999
Q ss_pred CCCCCcceeehhhhhhhc-CChhhHHHHHHHHH
Q 036160 553 EPKMESNYVFPSDISATQ-GRWNDFSGVRALLS 584 (601)
Q Consensus 553 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 584 (601)
.| ....|..++.+-... ||-.+++..+-+..
T Consensus 359 ~p-res~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 359 AP-RESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred Cc-hhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 99 667888888887776 99999999887654
No 163
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.01 E-value=0.00043 Score=55.90 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=78.9
Q ss_pred CCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC---cHHHHH
Q 036160 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP---NALVWE 527 (601)
Q Consensus 452 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~ 527 (601)
.|+...-..|..+....|++.+|...|++...- -..-|..+.-.+.++....+++.+|...++++ ..+| ++...-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 455555555666666777777777777666542 22334555666666666667777777666663 2223 233444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHH
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 583 (601)
.+...+...|.++.|+..++.++...| .+..-..++..+.++|+.++|..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 556666777777777777777777666 5555556666666777666666554443
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=2.1e-05 Score=57.06 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHH
Q 036160 433 HGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEI 510 (601)
Q Consensus 433 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 510 (601)
.|+++.|+.+++++.+..-. |+...+..+..+|.+.|++++|..+++. .+ ..|+ ......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46777777777777775211 1233444567777777777777777776 22 2222 34444556777777777777
Q ss_pred HHHhHh
Q 036160 511 ENFITE 516 (601)
Q Consensus 511 ~~~~~~ 516 (601)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.97 E-value=1.2e-05 Score=56.55 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=50.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
...|.+.+++++|.++++++++++|+++..+..++.++...|++++|.+.+++..+.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356778888888888888888888888888888888888888888888888888876663
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.00015 Score=61.22 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=62.5
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD--EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFAC 496 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 496 (601)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+. .|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 33455555556666666666666666655322221 234555555566666666666666655543 232 444445
Q ss_pred HHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
++.++...|+...+..-++.. .+.+++|.++++++++.+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 555555555544433222210 112577888888888888866
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.95 E-value=0.017 Score=54.00 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCCCCHh-hHHHHH---HHhhccCc-HHHHHHHHHHHHHHhCCCCChhHHHHHH----HHHHh---c
Q 036160 437 EKALEAFRMMLDEGYVPDEI-TFVVVL---SACSHMGL-IEEGKKHFSSIKKIYGITPTIKHFACMI----DILGR---A 504 (601)
Q Consensus 437 ~~A~~~~~~m~~~~~~p~~~-~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~---~ 504 (601)
..-+.+|++.... ..|.. -...|+ .-+-+.|. -++|.++++.+.+- .+-|...-+.+. ..|.. .
T Consensus 359 r~yL~lwe~~qs~--DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~ 434 (549)
T PF07079_consen 359 RDYLNLWEEIQSY--DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSM 434 (549)
T ss_pred HHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhh
Confidence 3345556666554 33332 112222 22444454 77888888877654 122333322221 22211 1
Q ss_pred CChHH---HHHHhHhcCCCC----cHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhh
Q 036160 505 GKFTE---IENFITETKLTP----NALVWENLLGA--CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575 (601)
Q Consensus 505 g~~~~---A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 575 (601)
..+.+ -..++++.++.| +...-|.|..+ +..+|++.++.-...-+.+..| .+.+|..+|-++....+++|
T Consensus 435 ~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 435 HAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHH
Confidence 12222 333455566666 34566666655 5688999999999999999999 88999999999999999999
Q ss_pred HHHHHHHH
Q 036160 576 FSGVRALL 583 (601)
Q Consensus 576 A~~~~~~~ 583 (601)
|.+++..+
T Consensus 514 A~~~l~~L 521 (549)
T PF07079_consen 514 AWEYLQKL 521 (549)
T ss_pred HHHHHHhC
Confidence 99998854
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.93 E-value=2e-05 Score=54.71 Aligned_cols=65 Identities=28% Similarity=0.335 Sum_probs=54.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 036160 490 TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHG-NIELDEKDAEKLLELEP 554 (601)
Q Consensus 490 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 554 (601)
+...|..++..+...|++++|+..|++ +...| +...|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 356778888888999999999999987 55566 6778888889999998 79999999999999887
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00012 Score=54.78 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=58.3
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc
Q 036160 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWH 536 (601)
Q Consensus 459 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~ 536 (601)
..+...+...|++++|...++.+.+. .+.+...+..++.++...|++++|.+.+++ +...| +...+..++..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 34445555666677777666666543 122234555666666667777777777765 23333 445666666777777
Q ss_pred CChhHHHHHHHHHHhcCC
Q 036160 537 GNIELDEKDAEKLLELEP 554 (601)
Q Consensus 537 g~~~~A~~~~~~~~~~~p 554 (601)
|+++.|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777776665
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00045 Score=63.27 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA-CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
.+|-.+++...+.+..+.|.++|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999998542 2234445444443 33357778899999999987 4566778889999
Q ss_pred HHHhcCChHHHHHHhHh-cCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 500 ILGRAGKFTEIENFITE-TKLTPN----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
.+.+.|+.+.|..+|++ +..-|. ..+|...+..-.+.|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999998 443333 3589999999999999999999999999988863
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.91 E-value=4.3e-05 Score=64.31 Aligned_cols=92 Identities=13% Similarity=-0.042 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTPN----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 565 (601)
...+..++..+...|++++|+..+++ +.+.|+ ..++..++..+...|++++|+..+++++++.|.+...+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 45566777778888888888888887 333332 3478888888999999999999999999999988888888888
Q ss_pred hhh-------hcCChhhHHHHHHH
Q 036160 566 ISA-------TQGRWNDFSGVRAL 582 (601)
Q Consensus 566 ~~~-------~~g~~~~A~~~~~~ 582 (601)
++. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 888 77787755555443
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.89 E-value=0.04 Score=56.19 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=52.2
Q ss_pred cCCChhHHHHHHhcCCC--CCccchHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhH
Q 036160 98 KCGLADNALKVFYRIKD--PDVVAWGAIITCL--DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173 (601)
Q Consensus 98 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 173 (601)
..+++..|.+....+.. |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 34555555555555443 222 333444433 3556666666555555443322 55555555555666666666666
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHhcCCc
Q 036160 174 IHAVICKYGFESDTLVGNALVSMYMENGRV 203 (601)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (601)
+|+...+. .|+......+..+|.+.+.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHH
Confidence 66665544 23344444455555555444
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.87 E-value=5.2e-06 Score=57.53 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=38.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
...|++++|++.++++++..|+++.++..++.+|...|++++|..+++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4567777777777777777777777777777777777777777777776654433
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2e-05 Score=44.38 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=24.9
Q ss_pred ccHHHHHHHHhhCCChhhHHHHHHhhhhcCC
Q 036160 17 VSWNALLNGYAESGDGQKVMHLFCSMKDMEK 47 (601)
Q Consensus 17 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~ 47 (601)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0004 Score=69.01 Aligned_cols=135 Identities=12% Similarity=0.019 Sum_probs=99.7
Q ss_pred CCCCHhhHHHHHHHhhc--c---CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC--------ChHHHHHHhHh
Q 036160 451 YVPDEITFVVVLSACSH--M---GLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAG--------KFTEIENFITE 516 (601)
Q Consensus 451 ~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--------~~~~A~~~~~~ 516 (601)
.+.|...|...+++... . ++...|..+|++..+. .|+ ...+..+..++.... +++.+.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45666788888877443 2 3477899999999875 677 556665555443321 23344444444
Q ss_pred ---cC-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 517 ---TK-LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 517 ---~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+. ...++..|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++.....+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 11 233567888887777788999999999999999999 5789999999999999999999999998876663
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=4.2e-05 Score=42.98 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=24.3
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036160 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSV 148 (601)
Q Consensus 118 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 148 (601)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877763
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.74 E-value=0.0002 Score=52.77 Aligned_cols=79 Identities=16% Similarity=-0.016 Sum_probs=68.8
Q ss_pred HHHHHHHhhCCChhhHHHHHHhhhhcCC-CCCcchHHHHHHHHhccC--------chhhhHHHHHHHHHhcCCCChhHHh
Q 036160 20 NALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFANSG--------YIKAGQVVHAMAIRLGCALDKFLSC 90 (601)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (601)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.+++. ++-..+.+|..|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3467777888999999999999999999 899999999999998654 3456788999999999999999999
Q ss_pred hHHHHhhc
Q 036160 91 SLVDMYSK 98 (601)
Q Consensus 91 ~l~~~~~~ 98 (601)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.00016 Score=64.89 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=58.9
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC----cHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITET-KLTP----NALVWE 527 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~ 527 (601)
.|......+.+.|++++|...|+.+.+.+ |+ ...+..++.+|...|++++|...|+++ ...| ....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444443455677777777777777652 33 235556667777777777777777663 2223 244445
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
.++..+...|+.+.|...++++++..|++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 55566666777777777777777777754
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.72 E-value=0.0005 Score=54.92 Aligned_cols=93 Identities=4% Similarity=-0.091 Sum_probs=67.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
...+..-+...|++++|..+|+-+..- .|. ..-|..|.-++...|++++|+..+.. ..+.| |+..+..++.++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455566778888888888777653 343 55666777778888888888888877 23455 6777788888888
Q ss_pred hcCChhHHHHHHHHHHhcC
Q 036160 535 WHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~ 553 (601)
..|+.+.|++.|+.++..-
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 8888888888888887765
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.038 Score=54.54 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 482 (601)
|-.|..-....|..+.|++.--.+.+ ..+-|-...|+.+.-+-+....+-...+.|-++.
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 33344445556777777665444333 1244555666666555555555554444444443
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.71 E-value=0.00044 Score=58.21 Aligned_cols=98 Identities=12% Similarity=0.052 Sum_probs=43.7
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH-
Q 036160 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS- 534 (601)
Q Consensus 459 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~- 534 (601)
..+...+...|++++|...++.......-++ ...++..+..++...|++++|+..+++ +.+.| ....+..++..+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3333444444555555555544443210001 012444444555555555555555544 22223 2233333333333
Q ss_pred ------hcCChh-------HHHHHHHHHHhcCCCC
Q 036160 535 ------WHGNIE-------LDEKDAEKLLELEPKM 556 (601)
Q Consensus 535 ------~~g~~~-------~A~~~~~~~~~~~p~~ 556 (601)
..|+++ +|..+++++++.+|++
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 445544 5566666666777743
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.69 E-value=0.00044 Score=50.99 Aligned_cols=78 Identities=5% Similarity=0.048 Sum_probs=66.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCC--------cchhhHHHHHHHHHCCCCchhHHHH
Q 036160 122 AIITCLDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGD--------QRCGESIHAVICKYGFESDTLVGNA 192 (601)
Q Consensus 122 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 192 (601)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++.- +.....+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445566677999999999999999999 8999999999999876542 3456788999999999999999999
Q ss_pred HHHHHHh
Q 036160 193 LVSMYME 199 (601)
Q Consensus 193 l~~~~~~ 199 (601)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9987764
No 183
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.66 E-value=8.4e-06 Score=46.54 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCCcceeehhhhhhhcCChhhHHH
Q 036160 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578 (601)
Q Consensus 545 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 578 (601)
+++++++++|+|+.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3689999999999999999999999999999963
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.65 E-value=1.7e-05 Score=54.91 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=33.6
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC-CCCcHHH
Q 036160 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-LTPNALV 525 (601)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 525 (601)
..|++++|++.|+.+... .+-+...+..++.+|.+.|++++|.++++++. ..|+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 456677777777766654 12245555666677777777777777776632 4455333
No 185
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00069 Score=61.99 Aligned_cols=157 Identities=11% Similarity=0.057 Sum_probs=109.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHH--HhhccCcHHHHHHHHHHHHHHhCCCCChhH------------
Q 036160 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS--ACSHMGLIEEGKKHFSSIKKIYGITPTIKH------------ 493 (601)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~------------ 493 (601)
.++.-.|++++|.++--...+. .++. .+..+++ ++...++.+.|...|++... ..|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 4566778888888877666653 2222 2333333 34456778888888877653 3555322
Q ss_pred -HHHHHHHHHhcCChHHHHHHhHh-cCCCC-----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhh
Q 036160 494 -FACMIDILGRAGKFTEIENFITE-TKLTP-----NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566 (601)
Q Consensus 494 -~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 566 (601)
+..=..-..+.|++.+|.+.+.+ +.+.| +...|.....+..+.|+..+|+.--+.+++++|.-..++..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 11123345678889999999887 55555 345566666667788999999999999999999888888888888
Q ss_pred hhhcCChhhHHHHHHHHHhcCCcC
Q 036160 567 SATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 567 ~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
+...++|++|.+.+++..+..-..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999887644433
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.0006 Score=64.87 Aligned_cols=119 Identities=10% Similarity=0.089 Sum_probs=97.5
Q ss_pred CCCChhHHhhHHHHhhcCCChhHHHHHHhcCCC-C-----CccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 036160 82 CALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-P-----DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155 (601)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 155 (601)
.+.+......+++.+....+++.+..++.+... | -..+.+++++.|...|..+.+++++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344666777778888888888888888877764 2 2335579999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhc
Q 036160 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200 (601)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (601)
+.||..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998887777777776666666555
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.06 Score=50.03 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=49.7
Q ss_pred HHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHH
Q 036160 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475 (601)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 475 (601)
+.-+...|+...|.++-.+..-|+-.-|...+.+++..+++++-.++... +-++..|...+.+|.+.|+..+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 33344455555555555555555555555555555555555554443221 112244555555555555555555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036160 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513 (601)
Q Consensus 476 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 513 (601)
.+..++ + +..-+..|.++|++.+|.+.
T Consensus 258 ~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 258 KYIPKI------P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHhC------C-----hHHHHHHHHHCCCHHHHHHH
Confidence 554331 1 12234455555555555544
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.58 E-value=0.00058 Score=52.60 Aligned_cols=84 Identities=15% Similarity=-0.029 Sum_probs=40.6
Q ss_pred HHHHHhcCChHHHHHHhHh---cCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCcceeehhhhhhh
Q 036160 498 IDILGRAGKFTEIENFITE---TKLTPN--ALVWENLLGACSWHGNIELDEKDAEKLLELEPK---MESNYVFPSDISAT 569 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~---~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 569 (601)
..++-..|+.++|+.++++ .+.... ...+-.+...+...|++++|..++++..+..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444445555555555554 111111 223344445555555555555555555555554 33344444555555
Q ss_pred cCChhhHHHHHH
Q 036160 570 QGRWNDFSGVRA 581 (601)
Q Consensus 570 ~g~~~~A~~~~~ 581 (601)
.|+.+||.+.+-
T Consensus 88 ~gr~~eAl~~~l 99 (120)
T PF12688_consen 88 LGRPKEALEWLL 99 (120)
T ss_pred CCCHHHHHHHHH
Confidence 555555555543
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0076 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 322 YTAIITSYAQAGEAEMALKCFRKMRL 347 (601)
Q Consensus 322 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 347 (601)
|......|-..|++++|.+.|.+...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34456667777888888777776543
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.00084 Score=63.94 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=89.8
Q ss_pred CCchhHHHHHHHHHHhcCCccHHHHHHhhcCCC------CcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHH
Q 036160 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257 (601)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 257 (601)
+.+......+++.+....+++.+..++.+.... -..+..++++.|.+.|..+.++.+++.=..-|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444555556666666666677777776666441 13355688899999999999999999988899999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhc
Q 036160 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301 (601)
Q Consensus 258 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 301 (601)
.+|+.+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888777776665555554444
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.55 E-value=0.0082 Score=53.57 Aligned_cols=56 Identities=9% Similarity=0.028 Sum_probs=46.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC---cceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 529 LLGACSWHGNIELDEKDAEKLLELEPKME---SNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
++..|.+.|.+..|..-++.+++..|+.+ .+...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44567889999999999999999988744 455577788999999999999888664
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.015 Score=47.36 Aligned_cols=133 Identities=8% Similarity=0.078 Sum_probs=81.1
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036160 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497 (601)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 497 (601)
|++..--.|..++...|++.+|...|++...--+.-|......+.++....+++..|...++.+.+...-..+++..-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444455666777777777777777777664445555666677777777777777777777765541111124445556
Q ss_pred HHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 498 IDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
...|...|++++|...|+. +..-|+..........+.++|+.++|..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6777777777777777775 4445555554445555566665555554444443
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.54 E-value=0.02 Score=55.89 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=52.0
Q ss_pred cHHHHHHHHhcCCCchhHHHHH---------HHHHHCCCCCCHhhHHHHHHHhcCCCChhHH--HHHHHHHHHccCCCCc
Q 036160 220 SWNALFSRFQDYESPDQGLRIF---------YQMLLKGFKPNMCTFIVILKACSSLSDVGFG--KQLHAHTIKHSLDGNH 288 (601)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~---------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a--~~~~~~~~~~~~~~~~ 288 (601)
.+.+-+..|...|.+++|.++- +.+..+ ..+.-.++..=.+|.+..+...- ..-+++++++|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 3444455566666666665431 111111 11222333334444444443322 2224455666666665
Q ss_pred chhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346 (601)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 346 (601)
.. +...++-.|++.+|-++|.+ .|.-.+|+++|.+|+
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence 43 34556667778777776644 555566666666553
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.49 E-value=0.092 Score=49.39 Aligned_cols=203 Identities=12% Similarity=0.035 Sum_probs=114.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-------HHHhhc-CCCc---hhhHHHHHHHHHHhCCCC
Q 036160 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS-------CLNGCS-PVAT---LANGRLLHSIAVKTGHLL 387 (601)
Q Consensus 319 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-------ll~~~~-~~~~---~~~a~~~~~~~~~~~~~~ 387 (601)
+.++..++....+.++..+|.+.+.-+... .|+...-.. +-+..+ .-.+ ...-..+|......++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 456778888888899999998888776553 343332111 111111 1111 222233444444333221
Q ss_pred chhHHHHHHH---HHHhcCC-HHHHHHHHcCCC---CCCHhHHHHHHH----HHH---hCCChHHHHHHHHHHHHcCCCC
Q 036160 388 DMFVSTALVA---MYAKCGS-IDDAEAVFKGSA---LRDTASWNMMIG----GYV---KHGLGEKALEAFRMMLDEGYVP 453 (601)
Q Consensus 388 ~~~~~~~l~~---~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~----~~~---~~~~~~~A~~~~~~m~~~~~~p 453 (601)
......|+. -+-+.|. -++|.++++.+. .-|..+-|.+.. +|. +...+..-+.+-+-..+.|++|
T Consensus 376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 111122222 2233344 667777777554 334444443322 222 1233444555555566778777
Q ss_pred CHh----hHHHHHHH--hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHH
Q 036160 454 DEI----TFVVVLSA--CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527 (601)
Q Consensus 454 ~~~----~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 527 (601)
-.. .-|.|.+| +...|++.++.-.-..+. .+.|++.+|+.++-++....++++|..++.+++ |+...++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 543 34444443 456788888877655554 368899999999999999999999999999876 5666555
Q ss_pred HH
Q 036160 528 NL 529 (601)
Q Consensus 528 ~l 529 (601)
.-
T Consensus 530 sk 531 (549)
T PF07079_consen 530 SK 531 (549)
T ss_pred HH
Confidence 43
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.084 Score=48.72 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----Hh-hHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCCCC--hh
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-----EI-TFVVVLSACSHMGLIEEGKKHFSSIKKIY-GITPT--IK 492 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~--~~ 492 (601)
++..+...+.+.|++++|.++|++....-...+ .. .|...+-++...||+..|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 455677788899999999999998877532221 11 23334446667789999999998876431 22222 33
Q ss_pred HHHHHHHHHHh--cCChHHHHHHhHhcCCCCcHHHHHHH
Q 036160 493 HFACMIDILGR--AGKFTEIENFITETKLTPNALVWENL 529 (601)
Q Consensus 493 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l 529 (601)
....|+.++-. ...+++|+.-|+.+. +.|..--..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 45556666643 234667777777766 5555443333
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.48 E-value=0.00018 Score=50.55 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=47.7
Q ss_pred HHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 498 IDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
...|.+.+++++|++.+++ +...| ++..+...+..+.+.|++++|.+.++++++..|+++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 3567788888888888887 44556 66777778888888888888888888888888866543
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.45 E-value=0.0001 Score=45.31 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhh
Q 036160 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 565 (601)
..+..+..+|...|++++|+++++++++..|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999888877764
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.45 E-value=0.00026 Score=66.57 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehh-
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTPNA----LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS- 564 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~- 564 (601)
...+..+..+|.+.|++++|+..|++ +.+.|+. ..|..++.+|...|+.++|++.++++++..+ + .+..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn--~-~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN--L-KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--h-hHHHHHh
Confidence 66788888888888888888888887 6677753 3478888888888888888888888888632 1 111111
Q ss_pred -hhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 565 -DISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 565 -~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
..+....+.++..++++.+.+.|..
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1122234455667777777665553
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.44 E-value=0.0019 Score=58.07 Aligned_cols=87 Identities=10% Similarity=-0.073 Sum_probs=46.9
Q ss_pred HhcCChHHHHHHhHh-cCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CcceeehhhhhhhcCCh
Q 036160 502 GRAGKFTEIENFITE-TKLTPN----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKM---ESNYVFPSDISATQGRW 573 (601)
Q Consensus 502 ~~~g~~~~A~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 573 (601)
.+.|++++|...|++ +..-|+ +..+..++.+|...|++++|...|+++++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444566666666555 222332 2355555556666666666666666666555553 22333345555566666
Q ss_pred hhHHHHHHHHHhcCC
Q 036160 574 NDFSGVRALLSSQGI 588 (601)
Q Consensus 574 ~~A~~~~~~~~~~~~ 588 (601)
++|..+|+.+.+..+
T Consensus 234 ~~A~~~~~~vi~~yP 248 (263)
T PRK10803 234 AKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHHHCc
Confidence 666666665555444
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0061 Score=46.99 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=68.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHH
Q 036160 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDE--ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILG 502 (601)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 502 (601)
+..++-..|+.++|+.+|++....|+.... ..+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876553 3566777889999999999999999887621111 1223333456788
Q ss_pred hcCChHHHHHHhHh
Q 036160 503 RAGKFTEIENFITE 516 (601)
Q Consensus 503 ~~g~~~~A~~~~~~ 516 (601)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 89999999988765
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.008 Score=53.41 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=82.6
Q ss_pred CCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHhHh-cCCCC-cHHHH
Q 036160 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG---KFTEIENFITE-TKLTP-NALVW 526 (601)
Q Consensus 452 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~-~~~~p-~~~~~ 526 (601)
+-|...|..|...|...|+.+.|...|....+. ..+++..+..+..++..+. ...++..+|++ +..+| |+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 445578999999999999999999999998876 3444667777777765443 35688899998 55677 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 527 ENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
..|...+...|++.+|...++.+++..|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 888889999999999999999999988854
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.18 Score=50.62 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=66.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036160 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503 (601)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 503 (601)
+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..++|++-+++-+.. .++.-|.-++.+|.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk-------ksPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK-------KSPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-------CCCCCchhHHHHHHh
Confidence 333444556677777776665553 466666777777777777777766653322 123445666777777
Q ss_pred cCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 036160 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547 (601)
Q Consensus 504 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 547 (601)
+|+.+||..++-+.+--+ ....+|.+.|++.+|.++.-
T Consensus 757 ~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 777777777777755222 45566777777776666544
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00097 Score=61.32 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhh
Q 036160 492 KHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569 (601)
Q Consensus 492 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 569 (601)
.++..++.++.+.+++.+|+....+ +...| |...+..-+.+|...|+++.|+..++++++++|+|..+...+..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3567788899999999999999887 44444 788888889999999999999999999999999998888888877666
Q ss_pred cCChhhH-HHHHHHHHh
Q 036160 570 QGRWNDF-SGVRALLSS 585 (601)
Q Consensus 570 ~g~~~~A-~~~~~~~~~ 585 (601)
..++.+. .++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 5444444 777887753
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.15 Score=51.11 Aligned_cols=336 Identities=12% Similarity=0.042 Sum_probs=172.4
Q ss_pred hcCCCCCcchHH-----HHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcC---CChhHHHHHHhcCCC-
Q 036160 44 DMEKKFSKFSLS-----TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC---GLADNALKVFYRIKD- 114 (601)
Q Consensus 44 ~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~- 114 (601)
..|++.+..-|. .++.-+...+.+..|.++-..+...-.+. ...|......+.+. .+-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555544443 34566666777777777776664322222 44555555555544 233334444444444
Q ss_pred -CCccchHHHHHHHHhcCChhHHHHHHHHHHHcC--C--CCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhH
Q 036160 115 -PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS--V--KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189 (601)
Q Consensus 115 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (601)
....+|..+.+-....|+.+-|..+++.=...+ + -.+..-+...+.-+...|+.+....++-.+.+.- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 455667777777777888887777766422221 1 1123345555666666666666666655554431 1111
Q ss_pred HHHHHHHHHhcCCccHHHHHHhhcCC-CCcccHHHHHHHHhcCCCchhHHHHHH--HH----HHCCCCCCHhhHHHHHHH
Q 036160 190 GNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFY--QM----LLKGFKPNMCTFIVILKA 262 (601)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~--~m----~~~g~~p~~~t~~~ll~~ 262 (601)
+... ..+..-|..++....+ .|..+ +..+...++-..+...|. .. ...|..|+. .....+
T Consensus 581 l~~~------l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 581 LFMT------LRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred HHHH------HHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 1111 1122334444433322 11111 011111222222222111 10 011223332 233334
Q ss_pred hcCCCChhHHH----------HHHHHHH-HccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 036160 263 CSSLSDVGFGK----------QLHAHTI-KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331 (601)
Q Consensus 263 ~~~~~~~~~a~----------~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 331 (601)
+++........ .+.+.+. +.+......+.+.-+.-+...|+..+|.++-.+..-||-..|-.-+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 44433311111 1111111 123334444556666677778888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036160 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411 (601)
Q Consensus 332 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 411 (601)
.++|++-.+.-+.++ ++.-|..+..+|.+.|+.++|..++...... .-.+.+|.+.|++.+|.++
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 888887666554432 2455666777777778777777766543211 1456667777777666554
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0012 Score=55.49 Aligned_cols=97 Identities=9% Similarity=0.108 Sum_probs=74.2
Q ss_pred HHHhccC--CCCCcccHHHHHHHHhh-----CCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccC------------
Q 036160 5 KRVFKSM--PELNVVSWNALLNGYAE-----SGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG------------ 65 (601)
Q Consensus 5 ~~~f~~~--~~~~~~~y~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 65 (601)
...|+.. ...+-.+|..+++.+.+ +|..+=....+..|.+.|+.-|..+|+.||.++=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3456555 45677788888888864 4677777888889999999999999999998886422
Q ss_pred ----chhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC
Q 036160 66 ----YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101 (601)
Q Consensus 66 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (601)
+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 225578888888888888888888888888876543
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.33 E-value=0.0012 Score=60.28 Aligned_cols=128 Identities=8% Similarity=-0.060 Sum_probs=87.3
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHH---HHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-------cCC-CCcHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSI---KKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-------TKL-TPNAL 524 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~-~p~~~ 524 (601)
.|..|...|.-.|+++.|+...+.= -+.+|-+.. ...+..+..++.-.|+++.|.+.++. ++- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666667777778888888765532 222343332 45677788888888888888888875 221 11344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLELE------PKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
.-..|++.|.-..++++|+....+=+.+. .....+++.|+.++...|..++|..+.++-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55667788887888888888777665432 2245577788888888898888888877654
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.30 E-value=0.05 Score=53.31 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=130.8
Q ss_pred CCcccHHHHHHHHhhCCChhhHHHHH---------HhhhhcCCCCCcchHHHHHHHHhccCchhh--hHHHHHHHHHhcC
Q 036160 14 LNVVSWNALLNGYAESGDGQKVMHLF---------CSMKDMEKKFSKFSLSTVLKGFANSGYIKA--GQVVHAMAIRLGC 82 (601)
Q Consensus 14 ~~~~~y~~li~~~~~~~~~~~a~~~~---------~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~ 82 (601)
+-...|.+-+-.|..+|.+++|.++- +.+... ..+.-.++..-.+|.+.++..- ...-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34455666677788888888887542 111111 1233445555566666555433 2333456666676
Q ss_pred CCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036160 83 ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162 (601)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 162 (601)
.|+... +...++-.|++.+|-++|.+ .|.-.+|+++|..|+-- -...-+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~ 680 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEF 680 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHH
Confidence 676553 33456667888888888764 45556666666655421 112222
Q ss_pred hccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHH
Q 036160 163 TETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242 (601)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 242 (601)
...|+.++-..+.+.-.+- ..+..--.+....+...|+.++|..+.-+ .|-.+-+.++-+
T Consensus 681 ~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d------------------~gW~d~lidI~r 740 (1081)
T KOG1538|consen 681 LGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGD------------------HGWVDMLIDIAR 740 (1081)
T ss_pred hhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhc------------------ccHHHHHHHHHh
Confidence 2333333222222211100 00000011223334445555555444321 111122222222
Q ss_pred HHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCccc-
Q 036160 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA- 321 (601)
Q Consensus 243 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 321 (601)
++- ..+..+...+..-+.+...+..|.++|..+-.. .++++.....+++.+|..+-++.++--...
T Consensus 741 kld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 741 KLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred hcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccccccc
Confidence 211 123334444444445555555666666555332 346666667777777777777766521111
Q ss_pred ------------HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036160 322 ------------YTAIITSYAQAGEAEMALKCFRKMRLE 348 (601)
Q Consensus 322 ------------~~~ll~~~~~~g~~~~a~~~~~~m~~~ 348 (601)
|...-.+|.+.|+-.+|..+++++...
T Consensus 808 ~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred chHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 122233566667777777777666443
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0047 Score=56.63 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=98.7
Q ss_pred ccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHH-HhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHH
Q 036160 17 VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG-FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM 95 (601)
Q Consensus 17 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (601)
.+|-.+++...+.+..+.|..+|.+.++.+ ..+...|...... +.-.++.+.|..+|+...+. ++.+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367888899999999999999999998643 2233444444444 22356777799999998875 56688888888999
Q ss_pred hhcCCChhHHHHHHhcCCC--CC----ccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 036160 96 YSKCGLADNALKVFYRIKD--PD----VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLV 159 (601)
Q Consensus 96 ~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 159 (601)
+.+.|+.+.|..+|++... +. ...|...+..=.+.|+.+.+..+.+++.+. .|+......++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 9999999999999998875 22 347888888888888888888888888774 44444443333
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0074 Score=51.95 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=85.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHh----CCCCChhHHHHHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY----GITPTIKHFACMI 498 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~ 498 (601)
-++++..+.-.|.+.-....+++.++..-+-++.....|.+.-.+.||.+.|...|++..+.. ++.-+..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445666666677777778888888876434455566677777778888888888888665441 2222222333334
Q ss_pred HHHHhcCChHHHHHHhHhcC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 499 DILGRAGKFTEIENFITETK-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
..+.-++++.+|...+.++. ..| ++...|.-.-...-.|+...|++..+.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 45556667777777777744 233 44455555555556677778888888888877743
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.19 E-value=0.0018 Score=53.04 Aligned_cols=113 Identities=21% Similarity=0.181 Sum_probs=69.5
Q ss_pred hccCcHHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHH
Q 036160 466 SHMGLIEEGKKHFSSIKKIYGI--TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543 (601)
Q Consensus 466 ~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 543 (601)
...++.+.+...++++...+.- -|+... ........+.+++.- ......++..+...|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHH
Confidence 4456677777776666554311 111111 122233333333321 345566777788889999999
Q ss_pred HHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH-----hcCCcCCC
Q 036160 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS-----SQGIKKEP 592 (601)
Q Consensus 544 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 592 (601)
..+++++..+|-+...|..+..+|...|+..+|.++|+++. +.|+.|.|
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 99999999999998999999999999999999999988875 35665544
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.16 E-value=0.005 Score=48.39 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=58.9
Q ss_pred HHHHHhcCChHHHHHHhHhcC----CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc---eeehhhhhhh
Q 036160 498 IDILGRAGKFTEIENFITETK----LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN---YVFPSDISAT 569 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 569 (601)
+....+.|++++|.+.|+.+. ..| ....--.++.++.+.|++++|...+++.++++|.++.+ ++..|.++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 444556777777777777643 222 34555667777788888888888888888887776553 3334444444
Q ss_pred cCC---------------hhhHHHHHHHHHhcCCc
Q 036160 570 QGR---------------WNDFSGVRALLSSQGIK 589 (601)
Q Consensus 570 ~g~---------------~~~A~~~~~~~~~~~~~ 589 (601)
+.. ..+|..-|+.+.+.-|+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 444 66777777777665544
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.16 E-value=0.0094 Score=51.79 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=76.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHH
Q 036160 428 GGYVKHGLGEKALEAFRMMLDEGYVPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI-KHFACMIDILG 502 (601)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 502 (601)
..+...|++++|.+.|+++... -|+. .....++.++.+.|+++.|...++.+.+.+.-.|.. ..+-.++.++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3445556666666666666654 2221 234445555666666666666666666554333331 12222222221
Q ss_pred hc-----------CChHHHHHHhHhc-CCCCc------H-----HHH-------HHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 503 RA-----------GKFTEIENFITET-KLTPN------A-----LVW-------ENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 503 ~~-----------g~~~~A~~~~~~~-~~~p~------~-----~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
.. +...+|...|+++ ..-|+ . .+. -.++..|.+.|.+..|..-++.+++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 11 1123444444442 11111 0 011 12356678899999999999999999
Q ss_pred CCCCCc---ceeehhhhhhhcCChhhHHH
Q 036160 553 EPKMES---NYVFPSDISATQGRWNDFSG 578 (601)
Q Consensus 553 ~p~~~~---~~~~l~~~~~~~g~~~~A~~ 578 (601)
.|+.+. +...++.+|.+.|..+.|..
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 997543 45567788888998885443
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.10 E-value=0.06 Score=50.46 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHcCCCCC-------CHhHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 036160 393 TALVAMYAKCGSIDDAEAVFKGSALR-------DTASWNMMIGGYVK---HGLGEKALEAFRMMLDEGYVPDEITFVVVL 462 (601)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 462 (601)
..++-.|-...+++...++.+.+... +...--...-++.+ .|+.++|++++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677777777777777766533 12222223344555 788999999998866665677888888777
Q ss_pred HHhhc---------cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH----HHHHHh---H----hcC---C
Q 036160 463 SACSH---------MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT----EIENFI---T----ETK---L 519 (601)
Q Consensus 463 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~----~~~---~ 519 (601)
+.|-. ....++|+..|.+. +.+.|+..+--.++..+.-.|... +..++- . +.+ -
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65532 22366777777655 355677554444455555555422 222222 1 111 2
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
..|-..+.+++.++.-.||.++|.+.++++.++.|.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 335666788899999999999999999999999773
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.08 E-value=0.2 Score=44.82 Aligned_cols=58 Identities=9% Similarity=-0.079 Sum_probs=31.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHhhcCCCchhhHHHHHHHHHHh
Q 036160 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFT--LASCLNGCSPVATLANGRLLHSIAVKT 383 (601)
Q Consensus 326 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~ 383 (601)
...+...|++++|.+.|+++...-..+.... .-.+..++.+.++++.|...++...+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444566777777777777766432221111 123344455666666666666666554
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=97.06 E-value=0.0048 Score=58.46 Aligned_cols=159 Identities=13% Similarity=0.069 Sum_probs=108.9
Q ss_pred hHH--HHHHHHHHhCC-----ChHHHHHHHHHHHH-cCCCCCHh-hHHHHHHHhhcc---------CcHHHHHHHHHHHH
Q 036160 421 ASW--NMMIGGYVKHG-----LGEKALEAFRMMLD-EGYVPDEI-TFVVVLSACSHM---------GLIEEGKKHFSSIK 482 (601)
Q Consensus 421 ~~~--~~l~~~~~~~~-----~~~~A~~~~~~m~~-~~~~p~~~-~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 482 (601)
..| ..++.+..... ..+.|+.+|.+... ..+.|+.. .|..+..++... .+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55555544422 35678888998882 23567654 677776665432 23445666666665
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcce
Q 036160 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 483 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
+. -+-|+.....++.++.-.|+++.|...|++ ..+.| ....|...+..+.-.|+.++|.+.+++++++.|....+-
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 53 234467777777877888889999999998 44677 467888888888999999999999999999999766665
Q ss_pred eehhhh-hhhcCChhhHHHHHH
Q 036160 561 VFPSDI-SATQGRWNDFSGVRA 581 (601)
Q Consensus 561 ~~l~~~-~~~~g~~~~A~~~~~ 581 (601)
....++ .+-....++|++++-
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHh
Confidence 555555 334445677777765
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.04 E-value=0.00033 Score=49.98 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhHhc-C----CC---Cc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 492 KHFACMIDILGRAGKFTEIENFITET-K----LT---PN-ALVWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 492 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
.+++.+...|.+.|++++|+..+++. . .. |+ ..++..++..+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34555566666666666666665541 0 11 11 334555555556666666666666655543
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.03 E-value=0.081 Score=48.67 Aligned_cols=201 Identities=15% Similarity=0.054 Sum_probs=121.4
Q ss_pred HHHHHHHhhc--CCCchhhHHHHHHHHHHhCCCCchhHHHHHHHH--HHhcCCHHHHHHHHcCCC-CCCHh--HHHHHHH
Q 036160 356 TLASCLNGCS--PVATLANGRLLHSIAVKTGHLLDMFVSTALVAM--YAKCGSIDDAEAVFKGSA-LRDTA--SWNMMIG 428 (601)
Q Consensus 356 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~-~~~~~--~~~~l~~ 428 (601)
.|..|-.++. -.|+-..|.+.-.+..+. +..|..-.-.|+.+ -.-.|+.+.|.+-|+.|. .|... -...|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 4555555543 456666676665443321 12222222222222 234689999999998887 33222 2333444
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH--HHHHH--HHh
Q 036160 429 GYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA--CMIDI--LGR 503 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~--~~~ 503 (601)
...+.|..+.|.++-++.-.. .|.. ......+...+..|+|+.|+++++.-+...-+.++..--. .|+.+ ...
T Consensus 163 eAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 445778888888888877764 4544 4777888888999999999999888776655666643221 12211 111
Q ss_pred -cCChHHHHHHhHh-cCCCCcHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcce
Q 036160 504 -AGKFTEIENFITE-TKLTPNALVW-ENLLGACSWHGNIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 504 -~g~~~~A~~~~~~-~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
..+...|...-.+ .++.||...- -....++.+.|+..++-.+++.+.+.+| +|..+
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia 299 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIA 299 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHH
Confidence 1234455555444 5567765433 3345678899999999999999999888 54443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.04 Score=47.66 Aligned_cols=149 Identities=12% Similarity=0.055 Sum_probs=109.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHh
Q 036160 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514 (601)
Q Consensus 435 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 514 (601)
..+.-++.|++=.. ...+.++..+.-.|.+.--..++.+.++. .-+.++...+.|+..-...|+.+.|..+|
T Consensus 164 ~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 164 AEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred chhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34556666655432 23455666666677777778888888775 44556777888888888999999999888
Q ss_pred Hhc----C----CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 515 TET----K----LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 515 ~~~----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
++. + ..-+..........+.-.+|+..|...+.+..+.+|.++.+....+.++.-.|+..+|++..+.|.+.
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 842 1 22233344444455667788989999999999999999999999999999999999999999998876
Q ss_pred CCcCC
Q 036160 587 GIKKE 591 (601)
Q Consensus 587 ~~~~~ 591 (601)
-|.+.
T Consensus 316 ~P~~~ 320 (366)
T KOG2796|consen 316 DPRHY 320 (366)
T ss_pred CCccc
Confidence 55444
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.43 Score=47.59 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=19.8
Q ss_pred hhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHH
Q 036160 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNL 142 (601)
Q Consensus 102 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 142 (601)
+++|.++.+. .|.+..|..+.......-.++-|...|-+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 4444444443 25556666666555544445555444443
No 220
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.99 E-value=0.31 Score=45.43 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=84.1
Q ss_pred hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHh
Q 036160 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535 (601)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 535 (601)
.+.+..+.-+...|+...|.++-. .+.+ |+...|...+.+|+..|+|++-..+... +.++.-|.-++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355666677778888888777644 3344 7888899999999999999998887654 3356788889999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHH
Q 036160 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 581 (601)
.|+..+|.....+ ..+......|.+.|+|.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999888877 222556778899999999977633
No 221
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.074 Score=49.34 Aligned_cols=85 Identities=16% Similarity=0.093 Sum_probs=55.1
Q ss_pred HHHhCCChHHHHHHHHHHHHc---CCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 036160 429 GYVKHGLGEKALEAFRMMLDE---GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRA 504 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 504 (601)
-..+.|++..|.+.|.+.+.. +..|+...|.....+..+.|+..+|+.-.+...+ +.|. +..|..-..++.-.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHH
Confidence 345678888888888887752 2334444566666677788888888877766543 3333 33343344556666
Q ss_pred CChHHHHHHhHh
Q 036160 505 GKFTEIENFITE 516 (601)
Q Consensus 505 g~~~~A~~~~~~ 516 (601)
++|++|++.+++
T Consensus 335 e~~e~AV~d~~~ 346 (486)
T KOG0550|consen 335 EKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHHHHH
Confidence 778888888876
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.003 Score=58.22 Aligned_cols=68 Identities=12% Similarity=-0.013 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 523 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
..++..+..++.+.+++..|++...++++++|+|..+++.-+.+|...|+++.|+..|+++.+..|..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 55778888899999999999999999999999999999999999999999999999999998866644
No 223
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.0056 Score=53.62 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=51.4
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHhHhc----CCCC-cHHHHHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGRAGKFTEIENFITET----KLTP-NALVWENLLG 531 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~ 531 (601)
|+.-+. +.+.|++..|...|...++.+.-.+ ....+-.|..++...|++++|..+|..+ +-.| -+..+--++.
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444333 3445566666666666665421111 1334445566666666666666555542 1122 2345555555
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 532 ACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
...+.|+.++|...++++.+..|+.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 55566666666666666666666443
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.76 E-value=0.38 Score=43.06 Aligned_cols=84 Identities=23% Similarity=0.183 Sum_probs=37.1
Q ss_pred HHhcCChHHHHHHhHh-cCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHH
Q 036160 501 LGRAGKFTEIENFITE-TKLTPN--ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577 (601)
Q Consensus 501 ~~~~g~~~~A~~~~~~-~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 577 (601)
+...++.++|...+.+ +...|+ ...+..+...+...++++.|...+..+.+..|.....+..++..+...|+++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 3344445555544444 222222 3344444444444445555555555555554443333344444444444444444
Q ss_pred HHHHHHH
Q 036160 578 GVRALLS 584 (601)
Q Consensus 578 ~~~~~~~ 584 (601)
..+.+..
T Consensus 257 ~~~~~~~ 263 (291)
T COG0457 257 EALEKAL 263 (291)
T ss_pred HHHHHHH
Confidence 4444443
No 225
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.75 E-value=0.021 Score=48.22 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=73.0
Q ss_pred HHHhhC--CCCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC-------------
Q 036160 309 VAFDSL--ANKDLFAYTAIITSYAQ-----AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA------------- 368 (601)
Q Consensus 309 ~~~~~~--~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------- 368 (601)
..|+.. ..++-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566677777777764 4777888888899999999999999999999887532
Q ss_pred ---chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036160 369 ---TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404 (601)
Q Consensus 369 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (601)
+-+-+..++++|...|+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 235578888888888888888888888888876554
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.73 E-value=0.0037 Score=44.44 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC---CCcceeehhhhhhhcCChhhHHHHHHHH
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLEL----EPK---MESNYVFPSDISATQGRWNDFSGVRALL 583 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 583 (601)
+++.++..|...|++++|+..+++++++ .++ -..++..++.++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555555532 111 1234445555555555555555555544
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.71 E-value=0.0048 Score=46.72 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----cceeehhhhhhhcCChh
Q 036160 501 LGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME----SNYVFPSDISATQGRWN 574 (601)
Q Consensus 501 ~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~ 574 (601)
+...|+.+.|++.|.+ +.+-| +...||.-..++.-+|+.++|.+-+++++++..+.. ..|..-+.+|...|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3444444444444443 22222 344444444444444444444444444444432211 12333344444444444
Q ss_pred hHHHHHHHHHh
Q 036160 575 DFSGVRALLSS 585 (601)
Q Consensus 575 ~A~~~~~~~~~ 585 (601)
.|+.=|+...+
T Consensus 133 ~AR~DFe~AA~ 143 (175)
T KOG4555|consen 133 AARADFEAAAQ 143 (175)
T ss_pred HHHHhHHHHHH
Confidence 44444444433
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=0.56 Score=44.30 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=102.3
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhH-HHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH-FACM 497 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 497 (601)
...|..+++...+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|++..|..+|+.-... -||... ..-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 4467778888888888899999999999988 5677778888887665 58889999999876655 345333 3455
Q ss_pred HHHHHhcCChHHHHHHhHhc-C-CCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 498 IDILGRAGKFTEIENFITET-K-LTPN--ALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
+..+.+-++-+.|..+|++. . +..+ ..+|..++..-..-|+...+..+-+++.+.-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 67778889989999999862 2 2223 568888888888899999999999999999884
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.70 E-value=0.03 Score=48.68 Aligned_cols=130 Identities=15% Similarity=0.058 Sum_probs=89.0
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc----HHHHHHHHHH
Q 036160 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPN----ALVWENLLGA 532 (601)
Q Consensus 459 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~----~~~~~~l~~~ 532 (601)
-.....+...|++.+|.+.|+.+...+...|- ....-.++.++.+.|++++|...+++ +..-|+ ...+-.++.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 34445677889999999999999987544343 44566788999999999999999998 332332 2233333333
Q ss_pred HHh-----------cCChhHHHHHHHHHHhcCCCCCccee-----------------ehhhhhhhcCChhhHHHHHHHHH
Q 036160 533 CSW-----------HGNIELDEKDAEKLLELEPKMESNYV-----------------FPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 533 ~~~-----------~g~~~~A~~~~~~~~~~~p~~~~~~~-----------------~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
+.. .+...+|...++.+++..|+++-+-. .++..|.+.|.+.-|...++.+.
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 23456899999999999997655433 36788999999999999999998
Q ss_pred hcCC
Q 036160 585 SQGI 588 (601)
Q Consensus 585 ~~~~ 588 (601)
+.-+
T Consensus 169 ~~yp 172 (203)
T PF13525_consen 169 ENYP 172 (203)
T ss_dssp HHST
T ss_pred HHCC
Confidence 7544
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=96.68 E-value=0.068 Score=51.00 Aligned_cols=110 Identities=16% Similarity=0.076 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhH
Q 036160 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFIT 515 (601)
Q Consensus 437 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 515 (601)
.+|.+..++..+.+ +-|......+..+....++++.|...|++... +.|| ...|......+.-.|+.++|.+.++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555555542 33444555555555555667777777666653 3555 4455555555556677777777776
Q ss_pred h-cCCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 516 E-TKLTPNA---LVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 516 ~-~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
+ +.+.|.. ......+..|+.. -.+.|+.++-+-.+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 435 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKETE 435 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhccc
Confidence 6 5555532 2222223333333 35556666554443
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.68 E-value=0.024 Score=44.21 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=43.1
Q ss_pred CCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036160 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502 (601)
Q Consensus 450 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 502 (601)
.+.|+..+..+++.+|+..|++..|.++++...+.++++-+..+|..|+.=..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46688888888888898889999999999988888888777888887775443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.67 E-value=0.0091 Score=56.57 Aligned_cols=59 Identities=7% Similarity=0.015 Sum_probs=43.1
Q ss_pred HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI----KHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
...++.+..+|...|++++|+..|++..+. .|+. ..|..+..+|...|+.++|++.+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346777777788888888888888777654 5653 2477777888888888888888777
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.67 E-value=0.28 Score=47.13 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCCCC
Q 036160 541 LDEKDAEKLLELEPKME 557 (601)
Q Consensus 541 ~A~~~~~~~~~~~p~~~ 557 (601)
.|.+.+.++++.+|--+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 46678888888888543
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.66 E-value=0.77 Score=45.28 Aligned_cols=180 Identities=11% Similarity=0.059 Sum_probs=113.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALR---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 464 (601)
+..+|..-+..-.+.|+.+.+.-+|+...-| -...|-..+.-.-..|+.+-|..++....+-. .|+......+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 4556666677777788888888888776644 23345555555555588888888877766643 3333322222222
Q ss_pred -hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHH---HHhHhc-CCCCcHHHHHHH----HH-HH
Q 036160 465 -CSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIE---NFITET-KLTPNALVWENL----LG-AC 533 (601)
Q Consensus 465 -~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l----~~-~~ 533 (601)
....|+.+.|..+++.+... . |+ ...-..-+....+.|+.+.+. +++... ...-+..+...+ .+ .+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 34567999999999998876 3 65 333333456667888888877 444432 112232222222 22 23
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC
Q 036160 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571 (601)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 571 (601)
.-.++.+.|..++.++.+..|++...|..+......++
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45678899999999999999988888887777766554
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=96.61 E-value=0.091 Score=42.52 Aligned_cols=110 Identities=7% Similarity=-0.108 Sum_probs=81.6
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC-C-CCcHHHHHHHHHHHHhcC
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-L-TPNALVWENLLGACSWHG 537 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g 537 (601)
....-+...|++++|..+|+-+... + .-+..-+..|..++...|++++|+..+.... + ..|+..+-..+..+...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3344456789999999999988764 2 3345567788888999999999999988622 2 347777888889999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 538 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
+.+.|+..++.+++ .|.+ ..-.+.|..+++.+.+
T Consensus 120 ~~~~A~~~f~~a~~-~~~~-------------~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 120 KAAKARQCFELVNE-RTED-------------ESLRAKALVYLEALKT 153 (165)
T ss_pred CHHHHHHHHHHHHh-Ccch-------------HHHHHHHHHHHHHHHc
Confidence 99999999999998 3432 1124556777776654
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.60 E-value=0.44 Score=41.71 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=99.3
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-
Q 036160 429 GYVKHGLGEKALEAFRMMLDEGYVPD---EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA- 504 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 504 (601)
.-.+.|++++|.+.|+.+.... +-+ ..+...++.++.+.++++.|+...++..+.++-.||.. |...+.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~ 120 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFF 120 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhc
Confidence 3456678888888888887641 222 23555666777788888888888888887766666643 33334443321
Q ss_pred ------CChHHHH---HHhHh----cC---CCCcHHHH------------HHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 505 ------GKFTEIE---NFITE----TK---LTPNALVW------------ENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 505 ------g~~~~A~---~~~~~----~~---~~p~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
.+...+. .-|++ .+ ..||...- -.+++.|.+.|.+..|..-++++++.-|+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 1222233 33333 11 22332211 123466789999999999999999988876
Q ss_pred Cccee---ehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 557 ESNYV---FPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 557 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
+.+.. .+..+|...|..++|...-.-+...
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 65555 4556788999999999988766543
No 237
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.59 E-value=0.0056 Score=34.96 Aligned_cols=33 Identities=36% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
..+..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788889999999999999999999999965
No 238
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.57 E-value=0.012 Score=54.21 Aligned_cols=130 Identities=12% Similarity=0.033 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH----HcCCCC-CHhhHHHHHHHhhccCcHHHHHHHHHHHHHH---hCC-CCChh
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMML----DEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKI---YGI-TPTIK 492 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~----~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~p~~~ 492 (601)
.|..|.+.|.-.|+++.|+...+.=. +-|-+. ....+..+..++.-.|+++.|.+.|+..... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666677777765543321 112111 1135666777777777777777776654221 011 12233
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHh-cC-------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 493 HFACMIDILGRAGKFTEIENFITE-TK-------LTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~-~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
+..+|...|.-...+++|+.++++ +. ..-....+-.|+.++...|..++|..+.++.++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455566777767777777777765 21 112345566677777777777777777777665
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.54 E-value=0.049 Score=41.62 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=79.9
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 036160 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 510 (601)
.-.|..++..++..+...+ .+..-++.++--....-+-+...++++.+-+- -|.. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis----------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDIS----------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GG----------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCch----------hhcchHHH
Confidence 3457778888888777763 24445555554444444555555555554332 2221 23444444
Q ss_pred HHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 511 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
..-+-.++ .+....+..+.....+|..+.-.+++..+.+.+..+|.....++.+|.+.|+..+|.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44333332 234455566777788888888888888887654447788888899999999999999999988888874
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.47 E-value=0.0053 Score=35.09 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
.+|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888999999999999999999999999963
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.45 E-value=0.041 Score=44.93 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHH----HhCCCCChhHHH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK----IYGITPTIKHFA 495 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~ 495 (601)
....++..+...|++++|..+.+++.... +.|...|..++.+|...|+...|.+.|+.+.+ ..|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556667778888888888888888852 34556888888888888988888888887643 347888766543
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.38 E-value=0.1 Score=41.23 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=68.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCH---hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036160 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDE---ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502 (601)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 502 (601)
-.....+.|++++|.+.|+.+... .+.+. ..-..|+.+|.+.+++++|...+++.++.+.-.|++ -|.....+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHH
Confidence 344456678888888888888775 23222 356667778888888888888888888774444443 2444444444
Q ss_pred hcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 503 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
.-...+..+.-+- ..+-|. +....|...++++++..|+++
T Consensus 94 ~~~~~~~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 3332221111111 111122 224478888899999999654
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.045 Score=48.16 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFAC 496 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 496 (601)
.|+.-+. +.+.|++..|...|...++. -|+. ..+-.|..++...|++++|..+|..+.+.++-.|. ++.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3554443 34556677777777777764 2332 24555667777777777777777777666554444 466666
Q ss_pred HHHHHHhcCChHHHHHHhHhc
Q 036160 497 MIDILGRAGKFTEIENFITET 517 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~ 517 (601)
|..+..+.|+.++|...|+++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 777777777777777777763
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.27 E-value=1.1 Score=42.54 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHcCCC-----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhH-HHHH
Q 036160 389 MFVSTALVAMYAKCGSIDDAEAVFKGSA-----LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF-VVVL 462 (601)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 462 (601)
..++-..++.-.+..-++.|..+|-+.. .+++..+++++.-++. |++.-|.++|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455567777777778999999996554 5578889999987665 6788999999865553 4555443 4556
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHhcC-CCCcHHHHHHHHHHHHhcC--
Q 036160 463 SACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITETK-LTPNALVWENLLGACSWHG-- 537 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g-- 537 (601)
.-+...++-+.|..+|+..+.+ +..+ ...|..++..=..-|+...|..+=+++. .-|...+......-|.-..
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~da 551 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKADA 551 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhccc
Confidence 6677889999999999977664 3333 5688899988889999988887766643 4565555445544444332
Q ss_pred -----ChhHHHHHHHHHHhcCCCCCcce
Q 036160 538 -----NIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 538 -----~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
....+...-+...++...|...+
T Consensus 552 ~~~~le~t~~~n~rE~sv~~~ggnG~~~ 579 (660)
T COG5107 552 ILPPLEPTYMYNEREHSVQMEGGNGDRY 579 (660)
T ss_pred cCCCCCchhhhhhhhhheeecccCCCCc
Confidence 23344444444445555565433
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.06 E-value=0.038 Score=48.34 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=84.5
Q ss_pred HHHhccCC--CCCcccHHHHHHHHhhC-----CChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCc-----------
Q 036160 5 KRVFKSMP--ELNVVSWNALLNGYAES-----GDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY----------- 66 (601)
Q Consensus 5 ~~~f~~~~--~~~~~~y~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------- 66 (601)
+..|...+ +.|-.+|-..+..+... +.++=....++.|++.|+.-|..+|+.||..+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45566655 56777888888888654 6677788889999999999999999999998865431
Q ss_pred -----hhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC-hhHHHHHHhcCCC
Q 036160 67 -----IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL-ADNALKVFYRIKD 114 (601)
Q Consensus 67 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~ 114 (601)
-+-+.+++++|..+|+.||..+-..|++++++.+- ..+..++.-.|+.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 24578999999999999999999999999988764 3345555555553
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.37 Score=43.06 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=92.3
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 036160 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 508 (601)
.....|++.+|..+|+...... +-+......+..+|...|+.+.|..++..+-.. --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 4556778888888888777742 223456667777888888888888888765432 10111112223345566666666
Q ss_pred HHHHHhHhcCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCcceeehhhhhhhcCChhh
Q 036160 509 EIENFITETKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEP--KMESNYVFPSDISATQGRWND 575 (601)
Q Consensus 509 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~ 575 (601)
+...+-.+....| |...-..+...+...|+.+.|.+.+-.+++.+- ++..+-..+..++...|.-+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 6666666655566 666777777888888888888887777776543 355566666666666664433
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.1 Score=47.02 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHH----HHHHhhccCcHHHH
Q 036160 402 CGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV----VLSACSHMGLIEEG 474 (601)
Q Consensus 402 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~----l~~~~~~~~~~~~a 474 (601)
.|+..+|...++++. +.|...++..=.+|...|+.+.-...+++.... ..||...|.. +.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 344444444444443 335555555555666666666655555555543 3444433222 22233455666666
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 475 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
.+.-++..+. .+.|.-.-.++...+.-.|++.++.+++.+
T Consensus 195 Ek~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6655544432 122233444555555566666666666655
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.97 E-value=1.1 Score=39.94 Aligned_cols=197 Identities=17% Similarity=0.095 Sum_probs=129.7
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCC--C-CHhHHHHHHH-H
Q 036160 355 FTLASCLNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--R-DTASWNMMIG-G 429 (601)
Q Consensus 355 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~-~ 429 (601)
..+......+...+....+...+...... ........+......+...+.+..+.+.+..... + +......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33334444444445555444444444332 2233444455555666666667777777765442 2 2122333333 7
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCC----CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhc
Q 036160 430 YVKHGLGEKALEAFRMMLDEGYVP----DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGRA 504 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 504 (601)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 8899999999999999865 344 2234444445567788999999999988765 233 367788888999999
Q ss_pred CChHHHHHHhHh-cCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 505 GKFTEIENFITE-TKLTPN-ALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 505 g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
++++.|...+.. ....|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999987 444554 455566666666777899999999999999996
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.35 Score=43.20 Aligned_cols=120 Identities=9% Similarity=-0.024 Sum_probs=90.7
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHH---HHHHHHhcCCh
Q 036160 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN---LLGACSWHGNI 539 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 539 (601)
......|++.+|...|+..... .+-+...--.|+.+|...|+.+.|..++..++..-...-+.. -+..+.+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3466789999999999998875 233366777889999999999999999999874443333332 34455555555
Q ss_pred hHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
.+... +++-...+|+|...-..++..+...|+.++|.+.+=.+.+
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55433 4455667999999999999999999999999998776654
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.71 E-value=0.31 Score=48.50 Aligned_cols=159 Identities=11% Similarity=0.007 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHhhc----cCcHHHHHHHHHHHHHHhCCCCCh
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-------ITFVVVLSACSH----MGLIEEGKKHFSSIKKIYGITPTI 491 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~ 491 (601)
...++....-.|+-+.+++.+.+..+.+ .... ..|...+..++. ..+.+.|.++++.+.+. -|+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 4455566666788888888887766532 1111 123334443332 45678899999998876 4665
Q ss_pred hHHHHH-HHHHHhcCChHHHHHHhHhcC-----C-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-eeeh
Q 036160 492 KHFACM-IDILGRAGKFTEIENFITETK-----L-TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN-YVFP 563 (601)
Q Consensus 492 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~-----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~l 563 (601)
..|... .+.+...|++++|++.|++.. . .-....+-.++..+...++|++|.+.+.++.+...-.... .+..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 554433 466778899999999999632 1 1134566777888889999999999999999876543333 3345
Q ss_pred hhhhhhcCCh-------hhHHHHHHHHHh
Q 036160 564 SDISATQGRW-------NDFSGVRALLSS 585 (601)
Q Consensus 564 ~~~~~~~g~~-------~~A~~~~~~~~~ 585 (601)
+-++...|+. ++|.+++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5566678888 888888887764
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.9 Score=39.30 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=15.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 321 AYTAIITSYAQAGEAEMALKCFRKMR 346 (601)
Q Consensus 321 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 346 (601)
.|.--..+|-...++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34445556666667777666655543
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.61 E-value=0.43 Score=38.54 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036160 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503 (601)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 503 (601)
..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.+ ..+..+.++. .++.......+..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345555555566666666666666654 244445666666665542 2333333321 1222333345555666
Q ss_pred cCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 036160 504 AGKFTEIENFITETKLTPNALVWENLLGACSWH-GNIELDEKDAEK 548 (601)
Q Consensus 504 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 548 (601)
.+.++++.-++.+++. +...+..+... ++.+.|++.+.+
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6666666666666551 11222223333 556666665553
No 253
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=3.4 Score=42.30 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=40.3
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCCh
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 539 (601)
..+..|.+.|-+++-.-++.+| | .+..+|.-.--+.++.++|+++.++ .-|...|..|+..+...-.+
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence 3444455555555555555444 2 1233333344455666666666665 44788888888877766554
Q ss_pred hHHH
Q 036160 540 ELDE 543 (601)
Q Consensus 540 ~~A~ 543 (601)
-.+.
T Consensus 707 ~~~l 710 (846)
T KOG2066|consen 707 IKAL 710 (846)
T ss_pred HHHH
Confidence 4444
No 254
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.51 E-value=3.7 Score=42.70 Aligned_cols=115 Identities=9% Similarity=-0.034 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHHHHcC-CCCCHh--hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 036160 433 HGLGEKALEAFRMMLDEG-YVPDEI--TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509 (601)
Q Consensus 433 ~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 509 (601)
..+.+.|...+....... +.+... ....+.......+..++|...++..... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345677777777764432 322222 2333333333332244555555443221 2244444555555567788887
Q ss_pred HHHHhHhcC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 510 IENFITETK--LTPNALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 510 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
+...+..|. ..-...-..-++.++...|+.++|...++++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777764 11123334445666666788888888888764
No 255
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.50 E-value=0.13 Score=40.20 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHhhCCChhhHHHHHHhhhhc---------------CCCCCcchHHHHHHHHhccCchhhhHHHHHHHHH
Q 036160 15 NVVSWNALLNGYAESGDGQKVMHLFCSMKDM---------------EKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79 (601)
Q Consensus 15 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 79 (601)
|..++.++|.++++.|+.+....+++..-.- ...|+..+..+++.+++..+++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3457888999999999999998888765321 1234444444455555444555555554444433
Q ss_pred h-cCCCChhHHhhHH
Q 036160 80 L-GCALDKFLSCSLV 93 (601)
Q Consensus 80 ~-~~~~~~~~~~~l~ 93 (601)
. +++.+..+|..|+
T Consensus 81 ~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLL 95 (126)
T ss_pred HcCCCCCHHHHHHHH
Confidence 2 3333344444444
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=2.3 Score=40.24 Aligned_cols=164 Identities=9% Similarity=-0.044 Sum_probs=104.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCC--CC-CHhhHHHHHHHhhc---cCcHHHHHHHHHHHHHHhCCCCChhHHHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGY--VP-DEITFVVVLSACSH---MGLIEEGKKHFSSIKKIYGITPTIKHFAC 496 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 496 (601)
.-.++-+|....+++..+++.+.+..... .+ ....-....-++.+ .|+.++|.+++..+... .-.+++++|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 33555579999999999999999987410 11 11222234456667 89999999999996555 56788899998
Q ss_pred HHHHHHh----c-----CChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCC-hhH---HHHHH----HHHHhcC---C-
Q 036160 497 MIDILGR----A-----GKFTEIENFITE-TKLTPNALVWENLLGACSWHGN-IEL---DEKDA----EKLLELE---P- 554 (601)
Q Consensus 497 l~~~~~~----~-----g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~-~~~---A~~~~----~~~~~~~---p- 554 (601)
++..|-. . ...++|...+.+ ..+.||...--.++..+...|. .+. ..++. ..+.+.. +
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8877642 1 236778888887 5566765443334434444442 222 22222 1111111 1
Q ss_pred CCCcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 555 KMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 555 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
.+-..+-.++.++.-.|+.++|.+.+++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 122333467788888999999999999998653
No 257
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.39 E-value=0.029 Score=31.94 Aligned_cols=32 Identities=31% Similarity=0.246 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
.+|..++..+...|++++|...++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677888888999999999999999998884
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.39 E-value=1.6 Score=41.93 Aligned_cols=150 Identities=13% Similarity=-0.004 Sum_probs=88.1
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hh
Q 036160 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP---DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IK 492 (601)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~ 492 (601)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-+..+-..|+..+|...++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888999999999999999999888743222 2233334455566778889999888887762 12221 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-hHhcCCCCcHHHHHHHHHHHHhc------CChhHHHHHHHHHHhcCCCCCcceeehhh
Q 036160 493 HFACMIDILGRAGKFTEIENF-ITETKLTPNALVWENLLGACSWH------GNIELDEKDAEKLLELEPKMESNYVFPSD 565 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 565 (601)
....+...+.. ..+..... ........-...+..++..+... ++.+++...+.++.++.|+....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000001123444444444444 78899999999999999998889998888
Q ss_pred hhhhc
Q 036160 566 ISATQ 570 (601)
Q Consensus 566 ~~~~~ 570 (601)
.+...
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 77654
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.31 E-value=0.84 Score=36.82 Aligned_cols=45 Identities=4% Similarity=0.040 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhcc
Q 036160 19 WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64 (601)
Q Consensus 19 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 64 (601)
...++..+...+.+.....+++.+...+ ..+....+.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4455666665666666666666665554 24455555555555543
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.27 E-value=0.31 Score=46.85 Aligned_cols=56 Identities=18% Similarity=0.059 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCChHHHHHHhHhc-CCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 495 ACMIDILGRAGKFTEIENFITET-KLTP---NALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
..+..++-+.|+.+||++.++++ ...| +..+...|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33455555566666666666653 2222 22355556666666666666666665543
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=1.4 Score=36.76 Aligned_cols=127 Identities=12% Similarity=0.035 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHH--HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHH---
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV--VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC--- 496 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~--- 496 (601)
.|..++.... .+.+ +.....+++....-......+. .+...+...+++++|...++..... +.| ..+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~D-e~lk~l~~ 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKD-ENLKALAA 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chh-HHHHHHHH
Confidence 3444554433 3333 5555556666542111112222 3345678899999999998877643 222 23333
Q ss_pred --HHHHHHhcCChHHHHHHhHhcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 497 --MIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 497 --l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
|.......|.+|+|+..++... .+ .......-+..+...|+.++|+..|+++++..++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 4567788999999999999866 44 3334455568899999999999999999998763
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.13 E-value=0.83 Score=41.95 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CH----hhHHHHHHHhhccCcHHHHHHHHHHHHHH---hCCCCChhHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DE----ITFVVVLSACSHMGLIEEGKKHFSSIKKI---YGITPTIKHF 494 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~ 494 (601)
..++..++.-.+.++++++.|+...+--... |. ..+..|-..|.+..|+++|.-+..+..+. +++.--..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3446666777777888888887766521111 11 35777777788888888877665554322 2221111222
Q ss_pred H-----HHHHHHHhcCChHHHHHHhHh-c------CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 495 A-----CMIDILGRAGKFTEIENFITE-T------KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 495 ~-----~l~~~~~~~g~~~~A~~~~~~-~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
. .|..+|...|+.-+|.+..++ + +-.| .......+...|...||.|.|..-|+.+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2 344566677887777777776 2 2222 3445566777788888888888888877653
No 263
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.06 E-value=0.01 Score=48.34 Aligned_cols=86 Identities=12% Similarity=0.154 Sum_probs=61.5
Q ss_pred HHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhH
Q 036160 56 TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135 (601)
Q Consensus 56 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 135 (601)
.++..+.+.+.+.....+++.+...+...+...++.++..|++.++.+...++++.... .-...+++.+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777788888888888888766666788888888888888887888888774332 344567777777777777
Q ss_pred HHHHHHHHH
Q 036160 136 AAKIFNLMR 144 (601)
Q Consensus 136 a~~~~~~m~ 144 (601)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776543
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.06 E-value=0.053 Score=44.87 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=73.9
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHh
Q 036160 463 SACSHMGLIEEGKKHFSSIKKIYGITPTI-----KHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSW 535 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~ 535 (601)
.-+...|++++|..-|...... +++.. ..|..-..++.+.+.++.|+.-..+ +.+.| ....+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3477899999999999998876 33332 2455556778889999999988876 55666 34444445567888
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcceeehhh
Q 036160 536 HGNIELDEKDAEKLLELEPKMESNYVFPSD 565 (601)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 565 (601)
...++.|++-|+++++.+|....+-...++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 889999999999999999976544443333
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=5 Score=41.55 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 036160 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446 (601)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 446 (601)
-++..+.+..+.+.+..+.+...+.++..|..++..+++.+..+.-.++..+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 46666777888888888888887778888999999888888665554444443
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.01 E-value=0.18 Score=44.28 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=74.5
Q ss_pred HHHHhcCC--CCCccchHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC------------
Q 036160 106 LKVFYRIK--DPDVVAWGAIITCLDQ-----QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG------------ 166 (601)
Q Consensus 106 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 166 (601)
.+.|.... +.|..+|-..+..+.. .+.++=....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555554 4666777777776654 3456666777888999999999999999998875533
Q ss_pred ----CcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCc
Q 036160 167 ----DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203 (601)
Q Consensus 167 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (601)
+-..+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999998877654
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.96 E-value=0.78 Score=38.86 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=77.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 497 (601)
-+..||-+.--+...|+++.|.+.|+...+. .|.. .+...-.-++.-.|++.-|.+-+...-+. .|+- .|++|
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~D-PfR~L 171 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPND-PFRSL 171 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCC-hHHHH
Confidence 3456676666677777777777777777663 3432 12222222344557777776655544433 2221 23333
Q ss_pred HHHHH-hcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------CCcceeehhhhhhh
Q 036160 498 IDILG-RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK-------MESNYVFPSDISAT 569 (601)
Q Consensus 498 ~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~ 569 (601)
--.+. ..-++.+|..-+.+--...|..-|...+-.+.- |.. .-+.+++++.+...+ -+.+|+.|+.-+..
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 22222 223455665554431112333333322222111 111 012223333322222 23456667777777
Q ss_pred cCChhhHHHHHHHHHhcC
Q 036160 570 QGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 570 ~g~~~~A~~~~~~~~~~~ 587 (601)
.|+.++|..+|+.....+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 777777777777665543
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.92 E-value=0.043 Score=31.76 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
+|..|+..|.+.|++++|++++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777778888888888888875543
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.75 E-value=4 Score=44.06 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=60.8
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHH
Q 036160 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474 (601)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 474 (601)
.++.-.+.|.+.+|..++.--.+.--..|.+...-+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 334444555566666655544333344455555555566666666666654322 12345566667777777
Q ss_pred HHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHhcCCCC
Q 036160 475 KKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITETKLTP 521 (601)
Q Consensus 475 ~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 521 (601)
..+..++.. .-+ ..+-..|+.-+..++++-+|-++..+....|
T Consensus 985 l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 985 LSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 776554421 112 1122455666666777777777666644233
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.19 Score=45.32 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=119.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH----HHHHHHHhcCCh
Q 036160 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA----CMIDILGRAGKF 507 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~ 507 (601)
-.|+..+|-..|+++.+. ++.|...+...=.+|...|+.+.-...++++... ..|+...|. .+..++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999886 5667778888888999999999988888888754 466654443 445667799999
Q ss_pred HHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCcceeehhhhhhhcCChhhHHHHHH
Q 036160 508 TEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPK----MESNYVFPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 508 ~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 581 (601)
++|.+.-++ +.++| |..........+...|+.+++.++.++-...-.. -.--|.+.+..+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999888 55666 6667777777888899999999987765543221 12234456667778899999999999
Q ss_pred HHHhcCCcCCCc
Q 036160 582 LLSSQGIKKEPS 593 (601)
Q Consensus 582 ~~~~~~~~~~~~ 593 (601)
+=.-+...++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 876555556554
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.71 E-value=1.4 Score=43.38 Aligned_cols=160 Identities=18% Similarity=0.098 Sum_probs=100.5
Q ss_pred HHHHhcCChhHHHHHHHH-HHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036160 327 TSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405 (601)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (601)
....-.|+++.+.++... -.-..+ +......++.-+.+.|..+.|.++-..- ..-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 344557777777666641 111111 2344666777777777777777664322 2234556788999
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHh
Q 036160 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485 (601)
Q Consensus 406 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 485 (601)
+.|.++.++.. +...|..|.......|+++-|.+.|++..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 99999988765 667999999999999999999999987653 556666677788887777776665543
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC
Q 036160 486 GITPTIKHFACMIDILGRAGKFTEIENFITETK 518 (601)
Q Consensus 486 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (601)
| -++.-..++.-.|+.++..+++.+-+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 13444555666788888888887765
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=6.4 Score=40.85 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=57.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHH
Q 036160 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206 (601)
Q Consensus 127 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 206 (601)
+.+.|++++|...|-+-... +.|. .++.-+....+...-..+++.+.+.|+. +..--..|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 44567777776666554432 2222 2344444444555555666667776643 334445677888888888777
Q ss_pred HHHHhhcCCCCcc-cHHHHHHHHhcCCCchhHHHH
Q 036160 207 SRVFEAIAHQDSV-SWNALFSRFQDYESPDQGLRI 240 (601)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~ 240 (601)
.++.+...+.... -....+..+.+.+-.++|..+
T Consensus 451 ~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 451 TEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 7776665521111 133344444444444444433
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.66 E-value=0.12 Score=43.39 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=54.3
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc-HHHHHHHHHHHHhcCChhH
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPN-ALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~ 541 (601)
|-..|-+.-|.--|.+.. .+.|+ +.+|+.|.-.+...|+++.|.+.|+. +.+.|. ..++..-+-++.-.|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 445555666655555444 45666 56677777777777777777777776 445552 2233333333445567777
Q ss_pred HHHHHHHHHhcCCCCC
Q 036160 542 DEKDAEKLLELEPKME 557 (601)
Q Consensus 542 A~~~~~~~~~~~p~~~ 557 (601)
|.+-+.+..+-+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 7777777777677554
No 274
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.38 E-value=0.48 Score=46.43 Aligned_cols=156 Identities=14% Similarity=0.015 Sum_probs=85.7
Q ss_pred HHHHhcCCHHHHHHHHc--CCC-CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHH
Q 036160 397 AMYAKCGSIDDAEAVFK--GSA-LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 473 (601)
+...-.++++++.+..+ ++. .-+....+.++.-+-+.|.++.|+++.+.-.. -| ....+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------rF----eLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH--------RF----ELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------HH----HHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH--------Hh----HHHHhcCCHHH
Confidence 33444677777544443 111 11234466677777777777777776432111 12 23346677777
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 474 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
|.++.+ ..++...|..|.+...++|+++-|.+.+++.+ -+..|.-.|...|+.+.-.++.+.+.+..
T Consensus 337 A~~~a~-------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAK-------ELDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCC-------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHH-------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777632 23456678888888888888888888887765 34556666777777766666666655433
Q ss_pred CCCCcceeehhhhhhhcCChhhHHHHHHH
Q 036160 554 PKMESNYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 554 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
- +..-..++.-.|+.++..++|..
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 33333445556777777777653
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.37 E-value=2.5 Score=34.87 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=31.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 347 (601)
..+++.+...|++-+|.+..+.....+......++.+-.+.++...-..+++-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666667777776666665444444445555555555555544444444433
No 276
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.33 E-value=9.5 Score=41.41 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCCCCHhHH---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcH
Q 036160 395 LVAMYAKCGSIDDAEAVFKGSALRDTASW---NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471 (601)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 471 (601)
-+.+|..+|++.+|..+..++..+-.... ..|+.-+...+++-+|-++..+.... | ...+..+++...|
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHH
Confidence 34556666777777777666654422222 45666677777777777776665542 1 2223334555556
Q ss_pred HHHHHHHH
Q 036160 472 EEGKKHFS 479 (601)
Q Consensus 472 ~~a~~~~~ 479 (601)
++|.++..
T Consensus 1043 ~eAlrva~ 1050 (1265)
T KOG1920|consen 1043 EEALRVAS 1050 (1265)
T ss_pred HHHHHHHH
Confidence 66655543
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.30 E-value=0.1 Score=31.88 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=14.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
+..+..+|...|++++|.++++++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
No 278
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.16 E-value=0.43 Score=39.77 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=68.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHh-----hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 036160 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEI-----TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDIL 501 (601)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 501 (601)
+-+.+.|++++|..-|.+.++. ++|... .|..-..++.+.+.++.|+.-..+.++. .|+ .....--+.+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 4578899999999999999986 444432 3444456788899999999988877754 554 33333446678
Q ss_pred HhcCChHHHHHHhHhcC-CCCcHH
Q 036160 502 GRAGKFTEIENFITETK-LTPNAL 524 (601)
Q Consensus 502 ~~~g~~~~A~~~~~~~~-~~p~~~ 524 (601)
.+..++++|++-++++. ..|...
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchH
Confidence 88899999999999854 666544
No 279
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.93 E-value=8.6 Score=40.03 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 036160 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166 (601)
Q Consensus 121 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 166 (601)
=.+|-.+.|.|++++|.++....... .......|...+..+....
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 36777889999999999999665543 5666777888888887754
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.92 E-value=2.3 Score=32.92 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 487 (601)
....-+..+.+.|+-++-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.++.+. |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3455667788888888888888888764 3778888888888999999999999988888776 54
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.90 E-value=1.1 Score=34.56 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=50.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCC
Q 036160 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGK 506 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 506 (601)
+++..|+.+.|++.|.+.+.. .+-+...||.-..++.-.|+.++|..-+++..+..|-... ...|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455667777777777766663 2334456777777777777777777777766655332211 1122223344555666
Q ss_pred hHHHHHHhHh
Q 036160 507 FTEIENFITE 516 (601)
Q Consensus 507 ~~~A~~~~~~ 516 (601)
.+.|..-|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 6666666654
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.86 E-value=0.39 Score=47.81 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh-----HHHHHHHHHH----hcCChHHH
Q 036160 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK-----HFACMIDILG----RAGKFTEI 510 (601)
Q Consensus 440 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~----~~g~~~~A 510 (601)
.-+|+-+... ++| .+..++....-.||-+.+++.+....+..++.-... .|...+..+. .....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555543 444 456667777788999999999887765433333222 2233332222 24467889
Q ss_pred HHHhHhcC-CCCcHHHHHHH-HHHHHhcCChhHHHHHHHHHHhcCCC----CCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 511 ENFITETK-LTPNALVWENL-LGACSWHGNIELDEKDAEKLLELEPK----MESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 511 ~~~~~~~~-~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
.++++.+. .-|+...|... ++.+...|+.++|++.++++.+.... ....+.-+++.+..+++|++|.+.+.++.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 99999854 45776666444 46778899999999999998854333 34556678999999999999999999998
Q ss_pred hc
Q 036160 585 SQ 586 (601)
Q Consensus 585 ~~ 586 (601)
+.
T Consensus 333 ~~ 334 (468)
T PF10300_consen 333 KE 334 (468)
T ss_pred hc
Confidence 63
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.77 E-value=2.1 Score=39.52 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=78.7
Q ss_pred hhhhHHHHHHHHHhcCCCChhHHhhHHHHhhc--C----CChhHHHHHHhcCCC-------CCccchHHHHHHHHhcCC-
Q 036160 67 IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK--C----GLADNALKVFYRIKD-------PDVVAWGAIITCLDQQGC- 132 (601)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~- 132 (601)
+++...+++.+.+.|+..+.++|-+....... . ....+|..+++.|++ ++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 35678889999999998888877775544443 1 235577888888875 333455555443 3333
Q ss_pred ---hhHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCC--cchhhHHHHHHHHHCCCCchhHHHHHHH
Q 036160 133 ---CQEAAKIFNLMRESSVKPNQF--VLTSLVRATTETGD--QRCGESIHAVICKYGFESDTLVGNALVS 195 (601)
Q Consensus 133 ---~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 195 (601)
.+.+..+|+.+.+.|+..+.. ....++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356677788888877765433 33333333332222 3366777888888887776666554443
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.76 E-value=2.1 Score=35.27 Aligned_cols=134 Identities=8% Similarity=0.034 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcC--CccHHHHHHhhcC
Q 036160 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG--RVSYGSRVFEAIA 214 (601)
Q Consensus 137 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 214 (601)
.+.++.+.+.+++|+...|..+++.+.+.|++. .+..++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 456667777889999999999999999888754 4455556666666554444333222211 1233444444432
Q ss_pred CCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 036160 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282 (601)
Q Consensus 215 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 282 (601)
..+..++..+...|++-+|+++.+..... +...-..++.+..+.++...-..+++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24566777888888888888887765322 2223345666666666666666666655554
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.68 E-value=0.31 Score=38.58 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=29.9
Q ss_pred cCChHHHHHHhHhcC-CCCcHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCC
Q 036160 504 AGKFTEIENFITETK-LTPNALVW-ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572 (601)
Q Consensus 504 ~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 572 (601)
.++++++..+++.+. +.|+..-. ..-+..+...|++++|..++..+.+-.|..+..--.++.++...||
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 445555555555433 34432221 2223344455555555555555554444333333334444444443
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.67 E-value=1.4 Score=35.75 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=24.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHhhccCcHHHHHHHHHHHHH
Q 036160 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVV-LSACSHMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~ 483 (601)
.+.++.+.+..++..+.- +.|.......+ ...+...|+|.+|..+|+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555554 34544322211 1224455556666665555543
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.52 E-value=0.17 Score=45.44 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 492 KHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 492 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
.++..++..+...|+.+.+.+.+++ +...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4566666777777777777777776 33455 667777777777777777777777777665
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.48 E-value=0.072 Score=47.99 Aligned_cols=92 Identities=21% Similarity=0.151 Sum_probs=70.6
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCC
Q 036160 462 LSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGN 538 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~ 538 (601)
..-|.+.|.+++|+..|...+. +.| ++.++..-..+|.+..++..|..-... +.+.. -...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4568899999999999988764 456 778888888899999999988877766 22221 23455555555566789
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 036160 539 IELDEKDAEKLLELEPKM 556 (601)
Q Consensus 539 ~~~A~~~~~~~~~~~p~~ 556 (601)
.++|.+-++.++++.|++
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 999999999999999974
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.34 E-value=0.26 Score=39.85 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=66.6
Q ss_pred hHHHHHHHHH---HhcCChHHHHHHhHhcC-CCCcHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhh
Q 036160 492 KHFACMIDIL---GRAGKFTEIENFITETK-LTPNALVW-ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566 (601)
Q Consensus 492 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 566 (601)
.+.+.|+..+ .+.++.+++..++..+. +.|..... ..-+..+...|++.+|+.+++.+.+-.|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445554443 46778889999888865 57754444 3345667889999999999999888888776666667777
Q ss_pred hhhcCChhhHHHHHHHHHhcCCcC
Q 036160 567 SATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 567 ~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
+...|+. +-+.+-+.+.+.+..+
T Consensus 88 L~~~~D~-~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDP-SWRRYADEVLESGADP 110 (160)
T ss_pred HHHcCCh-HHHHHHHHHHhcCCCh
Confidence 7666663 5555556565555433
No 290
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=12 Score=38.67 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=21.8
Q ss_pred HHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCC
Q 036160 88 LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132 (601)
Q Consensus 88 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 132 (601)
....+|..+.-.|++++|-+..-.|...+..-|..-+..+...++
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 344455555555555555555555544444444444444443333
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.14 E-value=5 Score=35.96 Aligned_cols=60 Identities=15% Similarity=-0.038 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
+++.....|...|.+.+|.++-++++.++|-+...+..+..+|...|+.-.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334455778899999999999999999999999999999999999999999999988885
No 292
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.13 E-value=1.5 Score=40.38 Aligned_cols=163 Identities=10% Similarity=0.033 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCH---hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDE-GYVPDE---ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKH 493 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~ 493 (601)
.|..+.+++-+.-++.+++.+-+.-... |..|.. ....++..++...+.++++++.|+...+--.-..| ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555566666655443331 222311 23344666777888899999999987654222222 347
Q ss_pred HHHHHHHHHhcCChHHHHHHhHh-------cCCCC-----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC---
Q 036160 494 FACMIDILGRAGKFTEIENFITE-------TKLTP-----NALVWENLLGACSWHGNIELDEKDAEKLLELE--PKM--- 556 (601)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~-------~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~--- 556 (601)
+-.|...|.+..++++|.-+..+ .++.. ...+...+.-++...|..-.|.+.-+++.++. ..|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 88899999999999987766554 33222 12234445567888999999999999988752 223
Q ss_pred -CcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 557 -ESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 557 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
......++.+|...|+.+.|-.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334468899999999999988888664
No 293
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.86 E-value=11 Score=37.59 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=92.0
Q ss_pred CcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcc-hHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHH
Q 036160 15 NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKF-SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLV 93 (601)
Q Consensus 15 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (601)
+-..|..+|.---+....+.+..++..+... .|... -|.....-=.+.|..+.+.++|++-+. +++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3445666676655666667777778777753 34433 444455555578888999999998886 6677777777777
Q ss_pred HHhh-cCCChhHHHHHHhcCCC------CCccchHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036160 94 DMYS-KCGLADNALKVFYRIKD------PDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146 (601)
Q Consensus 94 ~~~~-~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 146 (601)
.-+. ..|+.+.....|+...+ .+...|...|.--..++++.....+|++..+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6555 44777778888877764 45567888888888888999999999988763
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.86 E-value=0.21 Score=27.96 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 527 ENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
-.++.++.+.|++++|.+.++++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34455566666666666666666666664
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.81 E-value=1.8 Score=41.47 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=78.9
Q ss_pred HHHHhCCChHHHHH-HHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036160 428 GGYVKHGLGEKALE-AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506 (601)
Q Consensus 428 ~~~~~~~~~~~A~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 506 (601)
.--...|+...|-+ ++..++...-.|+.....+.+ +...|+++.+...+....+. +.....+..+++....+.|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhh
Confidence 33445566665544 444444443345444443333 55678888888877776554 34445667777777788888
Q ss_pred hHHHHHHhHhcC-CC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceee
Q 036160 507 FTEIENFITETK-LT-PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562 (601)
Q Consensus 507 ~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 562 (601)
+++|...-.-|- -+ .++.+...........|-++++...+++++.+.|.....+..
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 888877766532 11 244444444444556677788888888888877764444443
No 296
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.79 E-value=0.036 Score=49.98 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=64.8
Q ss_pred hcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHH
Q 036160 503 RAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVR 580 (601)
Q Consensus 503 ~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 580 (601)
..|.+++|++.|.. +.+.| ....|..-.+++.+.+....|++-+..+++++|+....|-.-+.+...+|+|++|...|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 45667777777776 44444 45556666677777777888888888888888877777877777777888888888888
Q ss_pred HHHHhcCCcCC
Q 036160 581 ALLSSQGIKKE 591 (601)
Q Consensus 581 ~~~~~~~~~~~ 591 (601)
....+.++...
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 87777666544
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.73 E-value=1.2 Score=41.11 Aligned_cols=128 Identities=12% Similarity=0.161 Sum_probs=78.6
Q ss_pred hhhHHHHHHhhhhcCCCCCcchHHHHHHHHhc--cC----chhhhHHHHHHHHHhcC---CCChhHHhhHHHHhhcCCCh
Q 036160 32 GQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN--SG----YIKAGQVVHAMAIRLGC---ALDKFLSCSLVDMYSKCGLA 102 (601)
Q Consensus 32 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 102 (601)
+++.+.+++.|++.|+.-+..+|-+..-.... .. ....+..+|+.|.+..+ .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44456788999999988888777664444433 22 34679999999998753 3455666666554 33333
Q ss_pred ----hHHHHHHhcCCC-----CCccchHHHHHHHHhc-CC--hhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 036160 103 ----DNALKVFYRIKD-----PDVVAWGAIITCLDQQ-GC--CQEAAKIFNLMRESSVKPNQFVLTSLVRA 161 (601)
Q Consensus 103 ----~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 161 (601)
+.++.+|+.+.+ .|..-+-+-+-++... .. ..++.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 344555555543 2222222222222221 11 45788999999999999888877655433
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.53 E-value=1.9 Score=36.36 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh--hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH--HH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI--TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA--CM 497 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~l 497 (601)
.+..+..-|++.|+.+.|++.|.++.+....|... .+..+++.....+++..+...+.++........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56677888889999999999999988865555543 566777888888899888888887765422212222111 11
Q ss_pred --HHHHHhcCChHHHHHHhHhc
Q 036160 498 --IDILGRAGKFTEIENFITET 517 (601)
Q Consensus 498 --~~~~~~~g~~~~A~~~~~~~ 517 (601)
+-.+...|++.+|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567888888887763
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.38 E-value=8.9 Score=35.30 Aligned_cols=19 Identities=16% Similarity=-0.188 Sum_probs=12.8
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 036160 532 ACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~ 550 (601)
.+.+.++++.|.+.++-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777777554
No 300
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.34 E-value=29 Score=41.13 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 523 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
..+|-...+.....|.++.|...+-.+.+..+ +..+.-.+..+...|+...|..+++.-.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 46777777778888888888888887777764 66777778888888888888888887664
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.29 E-value=0.33 Score=30.89 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
.+..+.-++.+.|++++|.+..+.+++++|+|..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34456678899999999999999999999977443
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.09 E-value=0.065 Score=30.36 Aligned_cols=30 Identities=3% Similarity=-0.037 Sum_probs=25.1
Q ss_pred ceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 559 NYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 559 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
.+..++.++...|++++|++.+++..+..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 567889999999999999999999877554
No 303
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.05 E-value=3.6 Score=32.08 Aligned_cols=96 Identities=16% Similarity=0.011 Sum_probs=65.7
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHhHhcC--CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcce
Q 036160 488 TPTIKHFACMIDILGRAGKFT---EIENFITETK--LTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 488 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
.++..+--.+..++.+..+.+ +-+.+++++- -.| +......|.-++.+.++++.+.+....+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~--- 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR--- 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH---
Confidence 556666667778888776644 4556666632 234 345666677788999999999999999999999763
Q ss_pred eehhhhhhhcCChhhHHHHHHHHHhcCCcCCCceeEEEecC
Q 036160 561 VFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601 (601)
Q Consensus 561 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (601)
+|.. ++++.+..+.++.-.+..-|+|
T Consensus 106 --------------Qa~~-Lk~~ied~itkegliGm~v~gG 131 (149)
T KOG3364|consen 106 --------------QALE-LKETIEDKITKEGLIGMVVVGG 131 (149)
T ss_pred --------------HHHH-HHHHHHHHHhhcceeeeeehhh
Confidence 3333 4455566677777666665554
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.02 E-value=6 Score=32.49 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=81.8
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHH-
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM- 497 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l- 497 (601)
...|..-+. +++.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.. .|.+....-+
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~A 134 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLA 134 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHH
Confidence 334444443 456677888888888888876543222 1122223456778888888888888654 2333333222
Q ss_pred ----HHHHHhcCChHHHHHHhHhcCCC--C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 498 ----IDILGRAGKFTEIENFITETKLT--P-NALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 498 ----~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
...+...|.++....-.+-+..+ | ....-..|+-+-.+.|++..|...|+.+..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456788888888877775422 2 344556777777888899998888888776
No 305
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=8.2 Score=33.75 Aligned_cols=52 Identities=25% Similarity=0.096 Sum_probs=24.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC--CC-CCHhhHHHHHHHhhccCcHHHHHHH
Q 036160 425 MMIGGYVKHGLGEKALEAFRMMLDEG--YV-PDEITFVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~m~~~~--~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 477 (601)
..|-.+....++..|.+.++.-.+.+ .. -+..+...|+.+|- .|+.+++..+
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 33444445556666666665533321 11 12234555555443 3555555444
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.85 E-value=0.19 Score=40.77 Aligned_cols=130 Identities=9% Similarity=0.114 Sum_probs=83.6
Q ss_pred HHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcC
Q 036160 20 NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC 99 (601)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (601)
..+++.+.+++.++...++++.+...+...+....+.++..|++.++.+...++++ ..+.+-...++..+.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhc
Confidence 35688888999999999999999987766678889999999999988788877777 22224455667777777
Q ss_pred CChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 036160 100 GLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167 (601)
Q Consensus 100 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 167 (601)
|.+++|.-++.++...+... ..+...++++.|.+...+ .++...|..+++.+...+.
T Consensus 84 ~l~~~a~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 77777777777665411110 012233444444422221 2446666777766665543
No 307
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.55 E-value=0.58 Score=42.46 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=64.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036160 428 GGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506 (601)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 506 (601)
+-|.+.|.+++|+..|.+... +.| |.+++..-..+|.+..++..|..-....... + ..-...|+--+.+-...|+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHhh
Confidence 469999999999999998887 466 8889999999999999999888877766543 1 0112233333333334456
Q ss_pred hHHHHHHhHh-cCCCCcHH
Q 036160 507 FTEIENFITE-TKLTPNAL 524 (601)
Q Consensus 507 ~~~A~~~~~~-~~~~p~~~ 524 (601)
..+|.+-++. +.++|+..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 6666666665 45788643
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.39 E-value=0.12 Score=42.37 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChHH-------HHHHhHh-cCCCCc-HHHHHHHHHHHHhcC-
Q 036160 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA---GKFTE-------IENFITE-TKLTPN-ALVWENLLGACSWHG- 537 (601)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~-------A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g- 537 (601)
++.|.+..+..... -+.|...++....++... ....+ |.+-|++ +.+.|+ ...+..++.++...+
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 45566666654443 244566666655555443 23233 4444444 447785 578888888886543
Q ss_pred ----------ChhHHHHHHHHHHhcCCCCCcceeehhhhhh-hcCChhhHHHHHHHHHhcCCcC
Q 036160 538 ----------NIELDEKDAEKLLELEPKMESNYVFPSDISA-TQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 538 ----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
.+++|.+.|+++.+.+|+| .+|. .++...+|-++..++.+++...
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSSS--
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 3677778888888899976 2444 3577778888888777765543
No 309
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.37 E-value=0.54 Score=27.06 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRM 445 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~ 445 (601)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.29 E-value=0.093 Score=29.43 Aligned_cols=30 Identities=7% Similarity=-0.120 Sum_probs=26.0
Q ss_pred eeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 560 YVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 560 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+..++.++...|++++|.++|+++.+.-|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 456889999999999999999999886654
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.00 E-value=6.4 Score=32.30 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=21.5
Q ss_pred cCCChhHHHHHHhcCCCCCccchHHHHH-----HHHhcCChhHHHHHHHHHHH
Q 036160 98 KCGLADNALKVFYRIKDPDVVAWGAIIT-----CLDQQGCCQEAAKIFNLMRE 145 (601)
Q Consensus 98 ~~~~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~ 145 (601)
+.++.++|+.-|..+...+.-.|-.|.. .....|+...|...|.+.-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 3444555555555544433333333322 23344555555555555443
No 312
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.90 E-value=0.46 Score=25.91 Aligned_cols=31 Identities=32% Similarity=0.263 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
.+..++..+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556667777777777777777777777664
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.67 E-value=3.3 Score=34.72 Aligned_cols=89 Identities=9% Similarity=-0.033 Sum_probs=66.5
Q ss_pred HHHHHHhcCChHHHHHHhHh-cCCCCcHHHH-----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhc
Q 036160 497 MIDILGRAGKFTEIENFITE-TKLTPNALVW-----ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 570 (601)
+...+..+|++++|...++. +. .|....+ ..|.......|.+++|...+....+..= .+.....-+.++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 35668899999999999997 54 4432222 3345667888999999998876554322 334566788999999
Q ss_pred CChhhHHHHHHHHHhcC
Q 036160 571 GRWNDFSGVRALLSSQG 587 (601)
Q Consensus 571 g~~~~A~~~~~~~~~~~ 587 (601)
|+.++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999888765
No 314
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.49 E-value=12 Score=33.16 Aligned_cols=158 Identities=17% Similarity=0.106 Sum_probs=96.6
Q ss_pred HHhcCCHHHHHHHHcCCCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHhhc----
Q 036160 399 YAKCGSIDDAEAVFKGSALR------DTASWNMMIGGYVKHGLGEKALEAFRMMLDE-GYVPDEITFVVVLSACSH---- 467 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~---- 467 (601)
-.+.|++++|.+.|+.+... ...+--.++-++.+.++++.|+...++.... +-.||. -|...+.+++.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 34567888888888766522 2334555667788888999999999888874 222332 23333333322
Q ss_pred ---cCcHH---HHHHHHHHHHHHhCC---CCChhH------------HHHHHHHHHhcCChHHHHHHhHhcC-CCC----
Q 036160 468 ---MGLIE---EGKKHFSSIKKIYGI---TPTIKH------------FACMIDILGRAGKFTEIENFITETK-LTP---- 521 (601)
Q Consensus 468 ---~~~~~---~a~~~~~~~~~~~~~---~p~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---- 521 (601)
..|.. +|..-|+.++.++.- .||... =..+.+.|.+.|.+..|..-++++- .-|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 12333 444455555554211 112111 1234577889999998888888743 122
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
-...+-.+..+|...|-.++|.....-+....|+++
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 234666677899999999999998877777777654
No 315
>PRK09687 putative lyase; Provisional
Probab=90.46 E-value=14 Score=33.94 Aligned_cols=61 Identities=13% Similarity=-0.083 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 489 PTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 489 p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
++..+-..-+.++.+.|.. +|+..+-+ +. .++ .....+.++...|+. +|...+.++.+..|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444455555555552 33333332 33 222 122344555555553 45555555555444
No 316
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.46 E-value=12 Score=33.15 Aligned_cols=230 Identities=16% Similarity=0.196 Sum_probs=118.9
Q ss_pred CCHHHHHHHHhhCCCC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHhhcCCCc
Q 036160 302 GCLEDAGVAFDSLANK-------DLFAYTAIITSYAQAGEAEMALKCFRKMRLE---GI--KSNEFTLASCLNGCSPVAT 369 (601)
Q Consensus 302 ~~~~~a~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~ 369 (601)
.++++|+.-|.++.+- ...+...++..+.+.|++++.+..+.+|..- .+ .-+..+.++++.-.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3555666666554321 1123345677777888888888877776432 11 2244566677776666666
Q ss_pred hhhHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCC---------------CHhHHHHHHHH
Q 036160 370 LANGRLLHSIAVKT-----GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR---------------DTASWNMMIGG 429 (601)
Q Consensus 370 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~ 429 (601)
.+.-..+++.-... +-..-..+-+-|...|...+.+.+-.++++++.+. -...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 65555555433221 11222333345666677777766666666543210 13356666777
Q ss_pred HHhCCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHh-----hccCcHHHHHHHHHHHHHHhCC--CCCh---hHHHHHH
Q 036160 430 YVKHGLGEKALEAFRMMLDE-GYVPDEITFVVVLSAC-----SHMGLIEEGKKHFSSIKKIYGI--TPTI---KHFACMI 498 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~p~~---~~~~~l~ 498 (601)
|...++-.+-..+|++...- .--|.+... .+++-| .+.|.+++|..-|=+..+.+.- .|.. --|-.|+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 77777767777777765542 123444333 334433 3567787776433333332211 2221 2244555
Q ss_pred HHHHhcCC----hHHHHHHhHhcCCCCcHHHHHHHHHHHHhc
Q 036160 499 DILGRAGK----FTEIENFITETKLTPNALVWENLLGACSWH 536 (601)
Q Consensus 499 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 536 (601)
.++.+.|- -++|.- ....|.......++.+|...
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc
Confidence 66666652 111111 11234445556666666543
No 317
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.30 E-value=3.4 Score=37.37 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHH----HhCCCCChhHHHHH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK----IYGITPTIKHFACM 497 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 497 (601)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455566666666777777777766642 33555677777777777777777776666544 23566665555444
Q ss_pred HHH
Q 036160 498 IDI 500 (601)
Q Consensus 498 ~~~ 500 (601)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 318
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.26 E-value=0.38 Score=45.99 Aligned_cols=53 Identities=19% Similarity=0.054 Sum_probs=24.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHH
Q 036160 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583 (601)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 583 (601)
.++.+.+++..|..=+.++++.+|.....|..-+.++...+++.+|...|+..
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444433
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.16 E-value=0.72 Score=39.10 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 494 FACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
.+.-+..+.+.+++++|+...++ .+.+| |......+...++-.|++++|..-++-+-++.|+...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34455667788888888888775 55566 6777778888888899999998888888888886543
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.02 E-value=27 Score=36.55 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=30.3
Q ss_pred cCCCchhHHHHHHHHHHCC---------CCCCHhhHHHHHHHhc--CCCChhHHHHHHHHHHH
Q 036160 230 DYESPDQGLRIFYQMLLKG---------FKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIK 281 (601)
Q Consensus 230 ~~~~~~~a~~~~~~m~~~g---------~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~ 281 (601)
..+.++++.+.++++.... ..|...++..+++.++ ..|+++.+...++.+.+
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666553321 2345667777777654 56776677666665543
No 321
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.98 E-value=0.86 Score=25.64 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLD 448 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 448 (601)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666665
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.89 E-value=0.55 Score=26.62 Aligned_cols=20 Identities=10% Similarity=0.338 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHhcCChHHH
Q 036160 491 IKHFACMIDILGRAGKFTEI 510 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A 510 (601)
...|..++..|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444444
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.66 E-value=0.74 Score=27.40 Aligned_cols=29 Identities=28% Similarity=0.213 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 524 LVWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
.+++.++..|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777778888887777777763
No 324
>PRK10941 hypothetical protein; Provisional
Probab=89.24 E-value=0.96 Score=40.87 Aligned_cols=62 Identities=18% Similarity=0.043 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
+.+-.+|.+.++++.|..+.+.++.+.|+++.-+.-.|.+|.+.|.+..|..=++...++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 34445555666666666666666666666555555556666666666666665555554444
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.09 E-value=0.16 Score=26.68 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=13.3
Q ss_pred eeehhhhhhhcCChhhHHHHHH
Q 036160 560 YVFPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 560 ~~~l~~~~~~~g~~~~A~~~~~ 581 (601)
...++.++...|+.++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666666666666666554
No 326
>PRK09687 putative lyase; Provisional
Probab=89.03 E-value=18 Score=33.21 Aligned_cols=79 Identities=10% Similarity=0.124 Sum_probs=35.9
Q ss_pred CchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCc----hhHHHHHHHHHHCCCCCCHhhHHHHH
Q 036160 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP----DQGLRIFYQMLLKGFKPNMCTFIVIL 260 (601)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~t~~~ll 260 (601)
+|..+....+.++...|..+-...+..-+.++|...-...+.++...|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444555555544433333333323334444445555555555543 3455566555333 34444444444
Q ss_pred HHhcC
Q 036160 261 KACSS 265 (601)
Q Consensus 261 ~~~~~ 265 (601)
.++..
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44433
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.89 E-value=10 Score=30.41 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=21.3
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHhHhcC
Q 036160 468 MGLIEEGKKHFSSIKKIYGITPT---IKHFACMIDILGRAGKFTEIENFITETK 518 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (601)
.++.+++..+++.|.-. .|+ ..++. +..+...|+|++|..+|+++.
T Consensus 23 ~~d~~D~e~lLdALrvL---rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL---RPNLKELDMFD--GWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHHHh---CCCccccchhH--HHHHHHcCCHHHHHHHHHhhh
Confidence 45555555555555432 333 22222 233445555555555555543
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.76 E-value=3.8 Score=29.76 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036160 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 498 (601)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+.+ .+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 4556666676677889999999999999999999999999998875523 2444565554
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.48 E-value=0.87 Score=37.53 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHhh---HHHHHHHhhccCcHHHHHHHHHHHHHH----hCCCCC-hhHHHHHHHHHHhcCC-
Q 036160 436 GEKALEAFRMMLDEGYVPDEIT---FVVVLSACSHMGLIEEGKKHFSSIKKI----YGITPT-IKHFACMIDILGRAGK- 506 (601)
Q Consensus 436 ~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~- 506 (601)
++.|.+.++.-...+ +.|... |...+.-+++.....++.+++++.+.+ ..+.|+ ..++.++..+|...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 567777777755542 334443 444444455555545555555554332 246788 5788889888876653
Q ss_pred ----------hHHHHHHhHh-cCCCCcHHHHH
Q 036160 507 ----------FTEIENFITE-TKLTPNALVWE 527 (601)
Q Consensus 507 ----------~~~A~~~~~~-~~~~p~~~~~~ 527 (601)
+++|.+.|++ ...+|+...|+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3344444444 22567666544
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.45 E-value=35 Score=35.74 Aligned_cols=188 Identities=13% Similarity=0.061 Sum_probs=101.3
Q ss_pred cccHHHHHHHHhhCCChhhHHHHHHhhh-hcCCCCCc--chHHHHHHHHh-ccCchhhhHHHHHHHHHhcCCCCh-----
Q 036160 16 VVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSK--FSLSTVLKGFA-NSGYIKAGQVVHAMAIRLGCALDK----- 86 (601)
Q Consensus 16 ~~~y~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----- 86 (601)
+..|..||.. |+.+++.+. +..++|.. .++-.+...+. ...+++.|...++......-.++.
T Consensus 30 l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 30 LKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred HHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 3456666554 566777666 33334432 24555555555 577888888888876544333322
Q ss_pred hHHhhHHHHhhcCCChhHHHHHHhcCCC----CCccchHHHHH-----HHHhcCChhHHHHHHHHHHHcC---CCCChhh
Q 036160 87 FLSCSLVDMYSKCGLADNALKVFYRIKD----PDVVAWGAIIT-----CLDQQGCCQEAAKIFNLMRESS---VKPNQFV 154 (601)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~ 154 (601)
.....++..+.+.+... |...+++..+ .....|....+ .+...+++..|.+.++.+...- ..|-...
T Consensus 101 ~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 101 RCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 12334556666665555 7777766553 11222222222 2223378888888888775532 2334444
Q ss_pred HHHHHHHHh--ccCCcchhhHHHHHHHHHCC---------CCchhHHHHHHHHHH--hcCCccHHHHHHhhc
Q 036160 155 LTSLVRATT--ETGDQRCGESIHAVICKYGF---------ESDTLVGNALVSMYM--ENGRVSYGSRVFEAI 213 (601)
Q Consensus 155 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 213 (601)
+..++.+.. +.+..+.+.+.++.+..... .|...++..+++.++ ..|+++.+...++.+
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555544 34455666666666643321 234455555555543 356665666655544
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.32 E-value=4.2 Score=29.91 Aligned_cols=60 Identities=13% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555566666667889999999999999999999999999998887633 33446666643
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.84 E-value=3.1 Score=35.07 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=42.9
Q ss_pred cHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCC--cchHHHHHHHHhccCchhhhHHHHHHHHHh
Q 036160 18 SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS--KFSLSTVLKGFANSGYIKAGQVVHAMAIRL 80 (601)
Q Consensus 18 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 80 (601)
.+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+++.....+++..+..........
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 566777777888888888888887776543333 335666677777777777777776665543
No 333
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.54 E-value=27 Score=33.42 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPK----MESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
...+|..++..+.+.|.++.|...+.++....+. .+......+..+...|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678888999999999999999999999986632 455666678899999999999999988876
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.38 E-value=1.5 Score=43.04 Aligned_cols=83 Identities=11% Similarity=-0.044 Sum_probs=46.0
Q ss_pred hcCChHHHHHHhHh-cCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHH
Q 036160 503 RAGKFTEIENFITE-TKLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGV 579 (601)
Q Consensus 503 ~~g~~~~A~~~~~~-~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 579 (601)
-.|+...|...+.. +...| ..+..-.|.+...+.|-...|-.++.+.+.+....|.++..++++|....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34555555555554 33344 2334444555555555555666666666665555555666666666666666666666
Q ss_pred HHHHHh
Q 036160 580 RALLSS 585 (601)
Q Consensus 580 ~~~~~~ 585 (601)
|+...+
T Consensus 699 ~~~a~~ 704 (886)
T KOG4507|consen 699 FRQALK 704 (886)
T ss_pred HHHHHh
Confidence 665443
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=0.72 Score=39.74 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=46.7
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH-HHHHHHHHHHHhcCChhH
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPTIK-HFACMIDILGRAGKFTEIENFITE-TKLTPNA-LVWENLLGACSWHGNIEL 541 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~l~~~~~~~g~~~~ 541 (601)
|....+++.|+.-|.+.+ .+.|+.. -|+.=+.++.+..+++.+..-..+ +.+.||. .....++........++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 455556666666555444 3456543 333445555566666666555444 4455543 344445555556666666
Q ss_pred HHHHHHHHHhc
Q 036160 542 DEKDAEKLLEL 552 (601)
Q Consensus 542 A~~~~~~~~~~ 552 (601)
|+..++++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 77666666543
No 336
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.24 E-value=24 Score=32.48 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 422 SWNMMIGGYVKHGLGE---KALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~---~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
+...++.+|...+..+ +|.++++.+... .|+ +..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666666543 455555555443 233 334445556666677777788887777765
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.97 E-value=4.9 Score=36.40 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=65.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-CC--------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 036160 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-LR--------DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454 (601)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 454 (601)
|.+.+..+...++..-....+++++...+-++. .| ...+|-.+ +. .=++++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---ll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---LL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---HH-ccChHHHHHHHhCcchhccccc
Confidence 444455555555655555667777777665443 11 22333322 22 2367788888888888899999
Q ss_pred HhhHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
..+++.+++.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888877776554
No 338
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.82 E-value=78 Score=37.94 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=71.9
Q ss_pred hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cC-CCCc--------HHH
Q 036160 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TK-LTPN--------ALV 525 (601)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~p~--------~~~ 525 (601)
.+|....+....+|.++.|...+-...+. + .| ..+--.+..+-..|+...|+.++++ ++ ..|+ +..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 46778888888899999998877666553 2 33 3444567778889999999999887 21 1222 222
Q ss_pred HHHHHHH--------H-HhcCC--hhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 526 WENLLGA--------C-SWHGN--IELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 526 ~~~l~~~--------~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
-+..+.. | ...|+ .+.-.+.|+.+.+..|.....+++++..|.
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 2222211 2 12333 356678889999999999999999984443
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.46 E-value=1.7 Score=36.73 Aligned_cols=74 Identities=15% Similarity=0.030 Sum_probs=40.0
Q ss_pred HhcCChHHHHHHhHhcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCcceeehhhhhhhcCChhh
Q 036160 502 GRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPK----MESNYVFPSDISATQGRWND 575 (601)
Q Consensus 502 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 575 (601)
.+.|+ ++|++.|-++.-.| +.......+..|....|.+++++++.+++++.+. |+..+..|+.++..+|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 44555554433233 2233333334444466666777777777765332 45566666777777777666
Q ss_pred H
Q 036160 576 F 576 (601)
Q Consensus 576 A 576 (601)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 5
No 340
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.45 E-value=6.1 Score=35.85 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=73.5
Q ss_pred cCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCC-CCc-----cchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 036160 81 GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDV-----VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154 (601)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 154 (601)
|.+.+..+...++..-....+++++...+-.++. |+. .+-...++.+ -.-++++++.++..=.+-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 4455556666667666677888888888877764 221 1122333333 34466788888888888999999999
Q ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHC
Q 036160 155 LTSLVRATTETGDQRCGESIHAVICKYG 182 (601)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (601)
++.+|+.+.+.+++..|.++.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988888877664
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.86 E-value=38 Score=33.40 Aligned_cols=166 Identities=7% Similarity=-0.000 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccC
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 469 (601)
.-+++..++.+....-.+.+..++. ..+-..|..++.+|... ..++-..+|+++.+. .-|......-+..+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHh
Confidence 3344444444444444444433333 22334455555555555 345555666665553 223333332222233335
Q ss_pred cHHHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCChHHHHHHhHhc----CCCCcHHHHHHHHHHHHhcCCh
Q 036160 470 LIEEGKKHFSSIKKIYGITPT------IKHFACMIDILGRAGKFTEIENFITET----KLTPNALVWENLLGACSWHGNI 539 (601)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~ 539 (601)
+.+.+..+|.++... +-|. .+.|..|.... ..+.+..+.+..++ +...-...+..+-.-|....|+
T Consensus 146 k~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 555555555555443 2221 11233222211 22344444444332 2222233444444455555666
Q ss_pred hHHHHHHHHHHhcCCCCCcceeehh
Q 036160 540 ELDEKDAEKLLELEPKMESNYVFPS 564 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~~~~~~~~l~ 564 (601)
++|++++...++.+..|..+-..+.
T Consensus 222 ~eai~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 222 TEAIRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred HHHHHHHHHHhhhcchhhhHHHHHH
Confidence 6666666666666555544444333
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.69 E-value=38 Score=35.45 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=19.3
Q ss_pred HHHHhhcCCChhHHHHHHhcCCC---CCccchHHHHHHHHh
Q 036160 92 LVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQ 129 (601)
Q Consensus 92 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 129 (601)
+|--+.++|+.++|.++..+..+ .....+-..+..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 34445677777777777733322 233344455555544
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.11 E-value=9.2 Score=36.91 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=70.8
Q ss_pred HhcCCHHHHH-HHHcCCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHH
Q 036160 400 AKCGSIDDAE-AVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476 (601)
Q Consensus 400 ~~~~~~~~A~-~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 476 (601)
...|++-.|. +++..+. +.++.........+...|+++.+.+.+...... +.....+...+++.....|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3456666553 3333322 223333333444566788888888887766553 45566778888888888889999888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 477 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
.-..|... .+. +++....-....-..|-++++.-.|++
T Consensus 379 ~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~ 416 (831)
T PRK15180 379 TAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKR 416 (831)
T ss_pred HHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHH
Confidence 87777654 332 233333333333455678888888887
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.30 E-value=3.2 Score=32.34 Aligned_cols=71 Identities=11% Similarity=-0.052 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHHHhcC---ChhHHHHHHHHHHh-cCCC-CCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 520 TPNALVWENLLGACSWHG---NIELDEKDAEKLLE-LEPK-MESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
.+...+-..+.+++.+.. |..+.+.+++.+++ -.|. .....+.|+-.+++.|++++++++.+.+.+..+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 566677777888887765 56788899999997 5554 44566778888999999999999999998755543
No 345
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.02 E-value=60 Score=34.14 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=55.1
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036160 332 AGEAEMALKCFRKMRLEG-IKSNEF--TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408 (601)
Q Consensus 332 ~g~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (601)
..+.+.|...+....... ..+... ....+.......+..+.+...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777764433 222221 12222222222211333444433322211 1333334444444567777777
Q ss_pred HHHHcCCCCC--CHhHHHH-HHHHHHhCCChHHHHHHHHHHH
Q 036160 409 EAVFKGSALR--DTASWNM-MIGGYVKHGLGEKALEAFRMML 447 (601)
Q Consensus 409 ~~~~~~~~~~--~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~ 447 (601)
...+..|... +...|.- +.+++...|+.++|..+|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777776521 1112221 4455556788888888887764
No 346
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.92 E-value=1.1 Score=32.51 Aligned_cols=64 Identities=19% Similarity=0.039 Sum_probs=43.4
Q ss_pred CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CcceeehhhhhhhcCCh-hhHHHHHHHH
Q 036160 520 TP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM--ESNYVFPSDISATQGRW-NDFSGVRALL 583 (601)
Q Consensus 520 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 583 (601)
.| |......+...+...|++++|.+.+-.+++.+|+. ..+-..+..++...|.- +-+.++.++|
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45 66777888888889999999999988888887753 55556677777777774 3555555544
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.86 E-value=0.74 Score=25.88 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=24.6
Q ss_pred ceeehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 559 NYVFPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 559 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
+|..++.+|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4677899999999999999999988764
No 348
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.53 E-value=30 Score=30.26 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=31.0
Q ss_pred HHHHhcCChHHHHHHhHhcC---CCCcHHHHH-----HHHHHHH-hcCChhHHHHHHHHHHhcCCCC
Q 036160 499 DILGRAGKFTEIENFITETK---LTPNALVWE-----NLLGACS-WHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~-----~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
..-...+++.+|+++|+++. +..+..-|. .-...|. -..|.-.+...+++..+++|.-
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 33345667777877777632 122222221 1112222 2356667777777777787753
No 349
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.35 E-value=7.1 Score=28.44 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHH
Q 036160 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180 (601)
Q Consensus 134 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 180 (601)
-++.+-++.+....+.|++....+.+++|.+.+++..|.++++..+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555666666667777888888888888888888888887776663
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.34 E-value=59 Score=33.56 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=104.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036160 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP-VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412 (601)
Q Consensus 334 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 412 (601)
+.+.|+.++.+.-..|. |+...+...+.-... ..+...|.++|......|..+.. -.+..+|..
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~---~~la~~y~~----------- 372 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAI---YRLALCYEL----------- 372 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHH---HHHHHHHHh-----------
Confidence 55667777777766653 333333222222222 24456666666666666533211 111111110
Q ss_pred cCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh
Q 036160 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492 (601)
Q Consensus 413 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 492 (601)
+..-..+...|..++++..+.| .|...--...+..+.. ++++.+.-.+..+.+. +......
T Consensus 373 ----------------G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~ 433 (552)
T KOG1550|consen 373 ----------------GLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQS 433 (552)
T ss_pred ----------------CCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhh
Confidence 0111234566666666666665 3332222223333333 5555555554444433 3221111
Q ss_pred HHHHHHHHH---Hh----cCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCccee
Q 036160 493 HFACMIDIL---GR----AGKFTEIENFITETKLTPNALVWENLLGACSWH----GNIELDEKDAEKLLELEPKMESNYV 561 (601)
Q Consensus 493 ~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~ 561 (601)
.-..+.... .. ..+.+.+...+.+....-+......+...|... .+.+.|...+..+.+.. +....
T Consensus 434 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~ 510 (552)
T KOG1550|consen 434 NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALF 510 (552)
T ss_pred HHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHh
Confidence 111111111 00 113445555555544344555555566555433 35777777777777666 66677
Q ss_pred ehhhhhhh----cCChhhHHHHHHHHHh
Q 036160 562 FPSDISAT----QGRWNDFSGVRALLSS 585 (601)
Q Consensus 562 ~l~~~~~~----~g~~~~A~~~~~~~~~ 585 (601)
.++..+-. .+ +..|.+++++..+
T Consensus 511 nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 511 NLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred hhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 77777654 34 6788888887765
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.18 E-value=2.4 Score=22.12 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHHh
Q 036160 497 MIDILGRAGKFTEIENFI 514 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~ 514 (601)
+...+...|++++|...+
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444443
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.97 E-value=1.6 Score=26.52 Aligned_cols=25 Identities=4% Similarity=-0.112 Sum_probs=16.7
Q ss_pred ehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 562 FPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 562 ~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
.|+.+|...|+.+.|+++++.+.+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4566677777777777777766643
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.73 E-value=3.6 Score=24.26 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMML 447 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~ 447 (601)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 354
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.70 E-value=41 Score=31.22 Aligned_cols=17 Identities=6% Similarity=-0.179 Sum_probs=10.0
Q ss_pred ChhhHHHHHHHHHhcCC
Q 036160 572 RWNDFSGVRALLSSQGI 588 (601)
Q Consensus 572 ~~~~A~~~~~~~~~~~~ 588 (601)
+...|...+......+.
T Consensus 252 ~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 252 DKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 56666666666555444
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.65 E-value=14 Score=27.08 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=58.0
Q ss_pred chhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 66 YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145 (601)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 145 (601)
..++|.-+-+.+...+-. ...+-.+-+..+...|++++|..+.+.+..||...|-+|-. .+.|-.+++..-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456666666666554322 23333344566778899999999999998899988877754 466777777777777777
Q ss_pred cCCCCChhhHH
Q 036160 146 SSVKPNQFVLT 156 (601)
Q Consensus 146 ~~~~p~~~~~~ 156 (601)
.| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.38 E-value=28 Score=34.98 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHH
Q 036160 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSS 480 (601)
Q Consensus 402 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 480 (601)
.++++.|..++..+.++ .-+.++.-+-+.|-.++|+++ .+|+. -|.. ..+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHh
Confidence 45556555555544422 223344444455555555443 22222 1211 2345666666555332
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 481 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
. .+..-|..|.++....|++..|.+.|.+
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHh
Confidence 2 2234466666666666666666666655
No 357
>PRK12798 chemotaxis protein; Reviewed
Probab=82.16 E-value=50 Score=31.85 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=118.2
Q ss_pred cCCHHHHHHHHcCCCC----CCHhHHHHHHHH-HHhCCChHHHHHHHHHHHHcCCCCCHhh----HHHHHHHhhccCcHH
Q 036160 402 CGSIDDAEAVFKGSAL----RDTASWNMMIGG-YVKHGLGEKALEAFRMMLDEGYVPDEIT----FVVVLSACSHMGLIE 472 (601)
Q Consensus 402 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~~ 472 (601)
.|+.+++.+.+..+.. +....+-.|+.+ .....++.+|+++|+...- .-|.... ...-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888887763 344456666654 4455689999999998876 3565432 333344567889999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhcC---ChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036160 473 EGKKHFSSIKKIYGITPTIKHFAC-MIDILGRAG---KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548 (601)
Q Consensus 473 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 548 (601)
++..+-....+.|...|=...|.. +...+.+.+ ..+.-..++..|.-.-...+|-.+...-...|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988888877777666665444433 333444433 3344445555555222456888888888999999999999999
Q ss_pred HHhcCCCCCcceeehhhhhhh-----cCChhhHHHHHHHHH
Q 036160 549 LLELEPKMESNYVFPSDISAT-----QGRWNDFSGVRALLS 584 (601)
Q Consensus 549 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~ 584 (601)
++.+.+ ....-...+.+|.. ..+.++|.+.+..+-
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 999874 34444444445443 566777777766543
No 358
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=81.65 E-value=7.9 Score=35.32 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHh---hHHHHHHHhhccCcHHHHHHHHHHH
Q 036160 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEI---TFVVVLSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 481 (601)
|..+..+.|+..+|.+.++.+.+. .|-.. ....|+.++....-+.+...++-+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445666666666666665543 22111 2334555665555555555554433
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.61 E-value=4.9 Score=34.35 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=54.5
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC-CCC----cHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-LTP----NALVWENLLG 531 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~ 531 (601)
|.+.-+..+.+.+..++++...+.-++. -+.|...-..+++.|+-.|+|++|..-++-.. +.| -...|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455667778889999999988876664 24446677788999999999999998888633 344 4566766665
Q ss_pred H
Q 036160 532 A 532 (601)
Q Consensus 532 ~ 532 (601)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 3
No 360
>PRK10941 hypothetical protein; Provisional
Probab=81.47 E-value=6.4 Score=35.70 Aligned_cols=64 Identities=8% Similarity=-0.046 Sum_probs=38.8
Q ss_pred HHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 496 CMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
.+-.+|.+.++++.|+...+. +.+.| |+.-+..-+-.|.+.|.+..|..-++..++..|+++.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344556666666666666665 23444 44555556666666666666666666666666655543
No 361
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.40 E-value=7.8 Score=28.56 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHH
Q 036160 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181 (601)
Q Consensus 135 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (601)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555556666667777777777777777777777777777776654
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.88 E-value=3.7 Score=40.52 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=77.2
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHh-cCC-CCcHHHHHHHHHHHHhcCChh
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITE-TKL-TPNALVWENLLGACSWHGNIE 540 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~p~~~~~~~l~~~~~~~g~~~ 540 (601)
+...|+...|...+....- ..|- ....-.|++.+.+.|...+|-.++.+ +.+ ...+.++..+++++....|.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3457899999988876643 3443 23455678888888988889888776 442 335677888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 541 LDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 541 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
.|++.+++++++.|+++..-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999887776655543
No 363
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.46 E-value=2.3 Score=36.56 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=38.8
Q ss_pred HHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 500 ILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
+..+.|+.+.|.+++.+ +...| ....|..+.....+.|+++.|.+.+++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34456666667777666 44445 5566777777667777777777777777777776543
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.56 E-value=4.6 Score=28.08 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=19.9
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 036160 467 HMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENF 513 (601)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 513 (601)
.....++|+..|....+...-.|+ ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544443211222 22344444445555555444443
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.25 E-value=22 Score=28.55 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=38.1
Q ss_pred CCccchHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 036160 115 PDVVAWGAIITCLDQQGC-CQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165 (601)
Q Consensus 115 ~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 165 (601)
.+..+|++++.+..+... ---+..+|..|++.+.++++.-|..++.++.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355678888888866555 345677888888877888888888888887765
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.81 E-value=42 Score=32.53 Aligned_cols=55 Identities=9% Similarity=-0.074 Sum_probs=37.5
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHh--hHHHHHHHhh--ccCcHHHHHHHHHHHHHH
Q 036160 429 GYVKHGLGEKALEAFRMMLDEGYVPDEI--TFVVVLSACS--HMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 484 (601)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678888899998888886 555554 4445555553 456778888888876654
No 367
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.60 E-value=37 Score=34.98 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=74.3
Q ss_pred hCCChHHHHHHHHHHHH-------cCCCCCHhhHHHHHHHhhcc----C-cHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 432 KHGLGEKALEAFRMMLD-------EGYVPDEITFVVVLSACSHM----G-LIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~----~-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
...+++.|+.+|+.+.+ .|. ......+..+|.+. . +.+.|..++...-+. | .|+.... +..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHH--HHH
Confidence 44556666666665554 442 22344444444442 2 556677777666543 3 2333222 333
Q ss_pred HHHhc---CChHHHHHHhHhcCCCCcHHHHHHHHHHHH----hcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhh-cC
Q 036160 500 ILGRA---GKFTEIENFITETKLTPNALVWENLLGACS----WHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT-QG 571 (601)
Q Consensus 500 ~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g 571 (601)
.+... .+...|.++|......-+....-.+...|. ...+.+.|...+.++-+..+ +.+...++..+.. .+
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccc
Confidence 33222 245677777776332223333222222222 22367777777777777763 3444444443332 27
Q ss_pred ChhhHHHHHHHHHhcCCc
Q 036160 572 RWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 572 ~~~~A~~~~~~~~~~~~~ 589 (601)
+++.+.-.+..+.+.|.+
T Consensus 412 ~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE 429 (552)
T ss_pred cccHHHHHHHHHHHhhhh
Confidence 777777766666655543
No 368
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.51 E-value=1e+02 Score=33.34 Aligned_cols=245 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred CchHHHHhccCCCCCcccHHHHHHHHhhCCChhhHHHHHHhhhh---cCCCCCcchHHHHHHHHhccCch--hhhHHHHH
Q 036160 1 MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD---MEKKFSKFSLSTVLKGFANSGYI--KAGQVVHA 75 (601)
Q Consensus 1 ~~~a~~~f~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~ 75 (601)
+++...++...+. |..|+..|...|..++|+++|..... ..-..-...+..++.-+...+.. +.+.+.-.
T Consensus 494 vee~e~~L~k~~~-----y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~ 568 (877)
T KOG2063|consen 494 VEEIETVLKKSKK-----YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYAD 568 (877)
T ss_pred hHHHHHHHHhccc-----HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhh
Q ss_pred HHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 036160 76 MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155 (601)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 155 (601)
+.......-....+...-..-+..=..+.... |......+-+...++.+....-.++..-.
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~-------------------~l~~~~~~l~I~YLE~li~~~~~~~~~lh 629 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRDDVLN-------------------YLKSKEPKLLIPYLEHLISDNRLTSTLLH 629 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHHHHHH-------------------HhhhhCcchhHHHHHHHhHhccccchHHH
Q ss_pred HHHHHHHhccCC-cchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCc
Q 036160 156 TSLVRATTETGD-QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234 (601)
Q Consensus 156 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 234 (601)
+.++..|+..=+ ......--++..+.+ +...+..+....+.-....+++......-.-..+++.+ +.|+.
T Consensus 630 t~ll~ly~e~v~~~~~~~~kg~e~~E~~-------~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~--rl~kh 700 (877)
T KOG2063|consen 630 TVLLKLYLEKVLEQASTDGKGEEAPETT-------VREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLG--RLGKH 700 (877)
T ss_pred HHHHHHHHHHHhhccCchhccccchhhh-------HHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHh--hhhhH
Q ss_pred hhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHh
Q 036160 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300 (601)
Q Consensus 235 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (601)
++|+.++-... ++++.|..+....-+ ...++...|-.++..|..
T Consensus 701 e~aL~Iyv~~L---------------------~d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 701 EEALHIYVHEL---------------------DDIDAAESYCLPQYE-SDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred HHHHHHHHHHh---------------------cchhHHHHHHHHhcc-CCCcccHHHHHHHHHHhc
No 369
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.41 E-value=21 Score=30.44 Aligned_cols=77 Identities=14% Similarity=0.045 Sum_probs=54.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHH---CCCCchhHHHHHHHHHHhcCCcc
Q 036160 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY---GFESDTLVGNALVSMYMENGRVS 204 (601)
Q Consensus 128 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 204 (601)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++++++-..++. +-.+|+.++.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 668888888877765556666666655555 56788888888877765 23567888888888888888887
Q ss_pred HH
Q 036160 205 YG 206 (601)
Q Consensus 205 ~a 206 (601)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 66
No 370
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.63 E-value=8.4 Score=35.34 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHh-cC---CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhh
Q 036160 493 HFACMIDILGRAGKFTEIENFITE-TK---LTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~-~~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 566 (601)
+|.-=+.-|.+..++..|...+.+ +. -.| +.+.|+.-..+-.-.|++..|+.-..+++.++|.+..+++.=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 333445667778888888888876 32 233 355666666666777899999999999999999998899888888
Q ss_pred hhhcCChhhHHHHHHH
Q 036160 567 SATQGRWNDFSGVRAL 582 (601)
Q Consensus 567 ~~~~g~~~~A~~~~~~ 582 (601)
+..+.++++|....+.
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888887766665553
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.31 E-value=7.4 Score=27.12 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=35.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHhhccCcHHHHHHH
Q 036160 432 KHGLGEKALEAFRMMLDEGYVPDE--ITFVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 477 (601)
..++.++|+..|+...+.-..|.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999998886333322 3677888999999999888775
No 372
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.29 E-value=3.8 Score=35.30 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=28.1
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC
Q 036160 466 SHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP 521 (601)
Q Consensus 466 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p 521 (601)
.+.++.+.+.+++.+..+ +.|. ...|--+...-.+.|+++.|.+.+++ +.+.|
T Consensus 6 ~~~~D~~aaaely~qal~---lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALE---LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhh---cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 345555555555555543 2333 44555555555566666666665555 34444
No 373
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.11 E-value=50 Score=28.94 Aligned_cols=60 Identities=3% Similarity=-0.125 Sum_probs=36.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcc------eeehhhhhhh-cCChhhHHHHHHHHHhcCC
Q 036160 529 LLGACSWHGNIELDEKDAEKLLELEPKMESN------YVFPSDISAT-QGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 588 (601)
....-...+++.+|+.+|+++....-+|+.. |..-+.+|.- .++.-.+...+++-.+..|
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 3344457789999999999998765554332 2222323332 3677677777776555433
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.82 E-value=43 Score=29.91 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHhcC--------CCCcHHHHHHHHHHHHhcCCh
Q 036160 470 LIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITETK--------LTPNALVWENLLGACSWHGNI 539 (601)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~ 539 (601)
.+++|+.-|++..+.-|-.-+ ......++....+.|++++..+.+.++- -.-+..+.+.++..-....+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 445555555544433111111 1223334555555666665555555421 122444555555555555555
Q ss_pred hHHHHHHHHHHhc--CCCCCccee----ehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 540 ELDEKDAEKLLEL--EPKMESNYV----FPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 540 ~~A~~~~~~~~~~--~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
+.-.++++--++. +..|...|+ .|+.+|...|.+-.-.++++++...
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 5555555544431 223444443 5888888888888888888888753
No 375
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.64 E-value=9.2 Score=27.82 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC---cHHHHHHHHHHHHhcCC
Q 036160 489 PTIKHFACMIDILGRAGKFTEIENFITE-TKLTP---NALVWENLLGACSWHGN 538 (601)
Q Consensus 489 p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p---~~~~~~~l~~~~~~~g~ 538 (601)
.|...-..+...+...|++++|++.+-+ +...| +...-..++..+...|.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3456666777777778888887777666 33222 33444555555555554
No 376
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.35 E-value=23 Score=31.07 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 493 HFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
.+..+.+++...|++-++++...+ +...| +...|..-+.+....=+..+|..-+.++++++|.-..+
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 355566778888899899888887 44455 66677666666666678889999999999999954333
No 377
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.96 E-value=11 Score=21.72 Aligned_cols=29 Identities=14% Similarity=-0.088 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCChhHHHHH--HHHHHhcCCC
Q 036160 527 ENLLGACSWHGNIELDEKD--AEKLLELEPK 555 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~--~~~~~~~~p~ 555 (601)
-.++..+...|++++|+.+ +.-+..++|.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3445556666777777777 3355555553
No 378
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.40 E-value=1.5e+02 Score=33.02 Aligned_cols=257 Identities=11% Similarity=0.006 Sum_probs=147.4
Q ss_pred HHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCC
Q 036160 104 NALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183 (601)
Q Consensus 104 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (601)
....+.+.+.+++...-...+..+.+.+..+ +...+..+.. .++...-...+.++...+........+..+++
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--- 694 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG--- 694 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---
Confidence 3345555566788777777788887777644 4455555543 24444444555555544332222233333333
Q ss_pred CCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 036160 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263 (601)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 263 (601)
.+|..+-...+..+...+.. ....+...+.++|...-...+.++.+.+..+. +.... -.++...-.....++
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred CCCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 25666666666666654422 23455566677777777777777777655432 22222 235566666666677
Q ss_pred cCCCChhH-HHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHH-HHHhhCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 036160 264 SSLSDVGF-GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG-VAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341 (601)
Q Consensus 264 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 341 (601)
...+..+. +...+..+.+ .++..+-...+..+.+.|..+.+. .+...+..++...-...+.++...+. +++...
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 66665432 2233333332 456777788888888888766553 34445555665555666777777765 456666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 036160 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382 (601)
Q Consensus 342 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 382 (601)
+..+.. .|+...-...+.++.+......+...+..+.+
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 665554 46666666677777765434455555555554
No 379
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=74.32 E-value=73 Score=29.40 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=94.7
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 036160 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455 (601)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 455 (601)
+++.+..+++-+........++.+.+.+..|-+..+++....... .=+ ++.. +-.+.+.-++++.+. +.|-.
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed-~p~----a~~e--kr~~Vla~lkeLe~e-v~piv 93 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSED-MPN----ALVE--KRTEVLAELKELEEE-VAPIV 93 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhccccccc-chH----HHHH--HHHHHHHHHHHHHHH-HHHHH
Confidence 444455556666666666777777778888888888776631110 001 1111 112233333333332 11111
Q ss_pred hhH-H-HHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh---cCCCCcHHHHHHH
Q 036160 456 ITF-V-VVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE---TKLTPNALVWENL 529 (601)
Q Consensus 456 ~~~-~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~l 529 (601)
..+ + -++... ....+....++.+.+.+++.|+ ..+...+......+|++..|-.++-- +...||....+.+
T Consensus 94 ~~le~Pd~~~~~---~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsal 170 (432)
T KOG2758|consen 94 KVLENPDLIAAL---RSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSAL 170 (432)
T ss_pred HHHcCHHHHHHH---HhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHH
Confidence 000 0 111111 1222336677888888899998 66777788888899999998887543 4445565444444
Q ss_pred HHHHH---hcCChhHHHHHHHHHHhcCC
Q 036160 530 LGACS---WHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 530 ~~~~~---~~g~~~~A~~~~~~~~~~~p 554 (601)
-.-+. -..+|+.|.+-+.++.+.-.
T Consensus 171 wGKlASEIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 171 WGKLASEILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 33222 34689999998888887543
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.32 E-value=16 Score=32.92 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 494 FACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
+......|..+|.+.+|.++.++ +.+.| +...+..++..+...||--.|...++++-+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45566788899999999999988 55666 888888899999999997778777776653
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.14 E-value=9.7 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=16.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 036160 325 IITSYAQAGEAEMALKCFRKMRLEG 349 (601)
Q Consensus 325 ll~~~~~~g~~~~a~~~~~~m~~~~ 349 (601)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666777777777777666543
No 382
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.52 E-value=5.1 Score=38.70 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=73.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 036160 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV-LSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRA 504 (601)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 504 (601)
+..+.+.+.++.|..++.++++ +.||...|-.. ..++.+.+++..|..=+..+++. .|+ ...|--=+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4556677889999999999998 57877655443 47888999999998877777664 454 33343334556666
Q ss_pred CChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhc
Q 036160 505 GKFTEIENFITE-TKLTPNALVWENLLGACSWH 536 (601)
Q Consensus 505 g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~ 536 (601)
+++.+|...|+. ..+.|+..-....+.-|-+.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 778888888887 44778776666666555443
No 383
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.69 E-value=79 Score=28.66 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHhhcCCCchhh
Q 036160 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA-------SCLNGCSPVATLAN 372 (601)
Q Consensus 326 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~~~~~~ 372 (601)
.+-..+.+++++|+..+.++..+|+..+..+.+ .+...+.+.|+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 344567788999999999999998877665543 34444445554443
No 384
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=71.60 E-value=17 Score=32.65 Aligned_cols=62 Identities=23% Similarity=0.100 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
..+-.++.+.++++.|....++.+.++|+++..+.--|.+|...|-..-|+.-++...++-+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 34445677888888888888888888888888888888888888888888888887666554
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.34 E-value=39 Score=24.99 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=38.1
Q ss_pred HHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhH
Q 036160 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458 (601)
Q Consensus 398 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 458 (601)
.+...|++++|..+.+....||...|-+|-. -+.|-.+++..-+.+|..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4556788888888888777778777776643 35566666666666676665 4444333
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.12 E-value=7.4 Score=28.61 Aligned_cols=51 Identities=4% Similarity=0.032 Sum_probs=26.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCC---------cceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 534 SWHGNIELDEKDAEKLLELEPKME---------SNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
.+.||+..|.+.+.+......... .+...++.+....|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445566666555555554322211 122345555566666666666666554
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.98 E-value=44 Score=30.15 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=53.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----
Q 036160 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK---- 401 (601)
Q Consensus 326 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 401 (601)
|.+++..++|.+++...-+--+.--+..+......|-.|++.+....+.++-....+..-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6677788888887765544433222233344555555677777777777776666654333344446666666654
Q ss_pred -cCCHHHHHHHHc
Q 036160 402 -CGSIDDAEAVFK 413 (601)
Q Consensus 402 -~~~~~~A~~~~~ 413 (601)
.|.+++|+++..
T Consensus 170 PLG~~~eAeelv~ 182 (309)
T PF07163_consen 170 PLGHFSEAEELVV 182 (309)
T ss_pred ccccHHHHHHHHh
Confidence 577888877764
No 388
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=70.93 E-value=6.7 Score=35.41 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=46.3
Q ss_pred HhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceee
Q 036160 502 GRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562 (601)
Q Consensus 502 ~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 562 (601)
.+.|+.++|..+|+. +.+.| ++.++..++......++.-+|-++|-+++.+.|.|+.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 467888888888886 55666 56666666666666778888888888888888888776654
No 389
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.02 E-value=1.9e+02 Score=32.28 Aligned_cols=61 Identities=13% Similarity=-0.033 Sum_probs=25.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 489 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
++...-...+.++.+.|..+.+...+...-..+|..+-...+.++...+. +++...+..++
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 34444444555555555443332222221124444444444444444443 23333333333
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.51 E-value=3.1 Score=22.76 Aligned_cols=28 Identities=32% Similarity=0.281 Sum_probs=19.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCcceeehh
Q 036160 537 GNIELDEKDAEKLLELEPKMESNYVFPS 564 (601)
Q Consensus 537 g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 564 (601)
|+.+.|..+++++++..|.++..|..++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567777888888877776666555443
No 391
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.39 E-value=70 Score=31.48 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCCCce
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 594 (601)
....-+.++....+...+..-.+.+.....+.+.........++..|++..|.+++. ..+|.++||.
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g~ 274 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAGG 274 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccCc
Confidence 333445566666777777777777777767777788888899999999999998876 3566666653
No 392
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.13 E-value=1.2e+02 Score=29.85 Aligned_cols=207 Identities=12% Similarity=-0.019 Sum_probs=100.7
Q ss_pred HhhCCChhhHHHHHHhhhhcCCCCCcc--hHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhhcCCC
Q 036160 26 YAESGDGQKVMHLFCSMKDMEKKFSKF--SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGL 101 (601)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 101 (601)
-++.|+.+.+..+ .+.|..|+.. ...+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3556666554444 4456555543 2344555666677765 444555556555432 12234555667788
Q ss_pred hhHHHHHHhcCCCC----CccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCCcchhhHHH
Q 036160 102 ADNALKVFYRIKDP----DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV--LTSLVRATTETGDQRCGESIH 175 (601)
Q Consensus 102 ~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~ 175 (601)
.+.+..+++.-... +..-.+. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+. .
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~----v 151 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG----I 151 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----H
Confidence 88887777654321 1112233 3334455554 45556666676665432 1233444555666543 4
Q ss_pred HHHHHHCCCCchh--HHHHHHHHHHhcCCccHHHHHHhhcCCCCccc---HHHHHHHHhcCCCchhHHHHHHHHHHCCCC
Q 036160 176 AVICKYGFESDTL--VGNALVSMYMENGRVSYGSRVFEAIAHQDSVS---WNALFSRFQDYESPDQGLRIFYQMLLKGFK 250 (601)
Q Consensus 176 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 250 (601)
+.+.+.|..++.. .-.+-+...+..|+.+-+.-+++.-..++... ..+.+...+..|+. ++.+.+.+.|..
T Consensus 152 ~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad 227 (413)
T PHA02875 152 ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGAD 227 (413)
T ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcC
Confidence 4444555433321 11123333445566666666665544433221 12333333344443 344445556655
Q ss_pred CCH
Q 036160 251 PNM 253 (601)
Q Consensus 251 p~~ 253 (601)
++.
T Consensus 228 ~n~ 230 (413)
T PHA02875 228 CNI 230 (413)
T ss_pred cch
Confidence 553
No 393
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.25 E-value=1.3e+02 Score=29.86 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=46.0
Q ss_pred hHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhc-CCCChhHHhhHHHHhhcCCChhHHHHHHhcC
Q 036160 34 KVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRI 112 (601)
Q Consensus 34 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 112 (601)
+...+|+....+ .+-|+..|...+.-|.+.+.+.+...+|..|.... ..|+.+++.+. .-|-....++.|..+|.+-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 344455554433 23367777777777777777777777777776543 34455554442 2233333477777777766
Q ss_pred CC
Q 036160 113 KD 114 (601)
Q Consensus 113 ~~ 114 (601)
.+
T Consensus 167 LR 168 (568)
T KOG2396|consen 167 LR 168 (568)
T ss_pred hh
Confidence 54
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.18 E-value=25 Score=30.21 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=9.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHH
Q 036160 489 PTIKHFACMIDILGRAGKFTEIENF 513 (601)
Q Consensus 489 p~~~~~~~l~~~~~~~g~~~~A~~~ 513 (601)
|++.+|..++.++...|+.++|.+.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~ 166 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQW 166 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3333333333333333333333333
No 395
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.93 E-value=1.8e+02 Score=31.30 Aligned_cols=215 Identities=14% Similarity=0.000 Sum_probs=109.5
Q ss_pred cCCCchhhHHHHHHHHHHhCCCCch-------hHHHHHHH-HHHhcCCHHHHHHHHcCCC--------CCCHhHHHHHHH
Q 036160 365 SPVATLANGRLLHSIAVKTGHLLDM-------FVSTALVA-MYAKCGSIDDAEAVFKGSA--------LRDTASWNMMIG 428 (601)
Q Consensus 365 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~ 428 (601)
....++.+|..+..++...-..|+. ..+++|-. .....|+++.|.++.+... ......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3455666666666665544222221 12222221 2234577777776654322 335566777778
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHhh---HHHHH--HHhhccCc--HHHHHHHHHHHHHHhCCC-CC----hhHHHH
Q 036160 429 GYVKHGLGEKALEAFRMMLDEGYVPDEIT---FVVVL--SACSHMGL--IEEGKKHFSSIKKIYGIT-PT----IKHFAC 496 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~~-p~----~~~~~~ 496 (601)
+..-.|++++|..+.+...+..-.-+... +..+. ..+...|. +.+....+......+... |- ..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999888776665322223322 22222 23455663 333334444333321111 11 223344
Q ss_pred HHHHHHhcCChHHHHHHhHh---cC--CCCc--HHHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-ccee-----
Q 036160 497 MIDILGRAGKFTEIENFITE---TK--LTPN--ALVW--ENLLGACSWHGNIELDEKDAEKLLELEPKME-SNYV----- 561 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~---~~--~~p~--~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~----- 561 (601)
+..++.+ ++.+..-... .+ ..|. .... ..++......||.+.|.....++..+.-+.. -++.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3333322221 11 2232 2222 3566777888999999999888887644331 1111
Q ss_pred -ehhhhhhhcCChhhHHHHHHH
Q 036160 562 -FPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 562 -~l~~~~~~~g~~~~A~~~~~~ 582 (601)
........+|+..+|...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 122234457888888877664
No 396
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.89 E-value=97 Score=28.19 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHhcC-----------------CCC-cHHHH-HHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITETK-----------------LTP-NALVW-ENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------~~p-~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
+.....++..|.+.|++.+|+..|---. -.| +...| ...+--|.-.|+...|...+....+
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5667777888888888888776654211 112 22211 2223335566888888887777776
Q ss_pred c
Q 036160 552 L 552 (601)
Q Consensus 552 ~ 552 (601)
.
T Consensus 170 ~ 170 (260)
T PF04190_consen 170 K 170 (260)
T ss_dssp H
T ss_pred H
Confidence 5
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.57 E-value=66 Score=29.13 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHH----HcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHh-----h
Q 036160 396 VAMYAKCGSIDDAEAV----FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC-----S 466 (601)
Q Consensus 396 ~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~ 466 (601)
|.++...+++.++... |+.-.+-.+.....-|-.|.|.+.+..+.++-..-....-.-+...|..++..| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777777544 333223344455555666778888877777776666532122223465555444 4
Q ss_pred ccCcHHHHHHHH
Q 036160 467 HMGLIEEGKKHF 478 (601)
Q Consensus 467 ~~~~~~~a~~~~ 478 (601)
=.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 467788887775
No 398
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.20 E-value=1.4e+02 Score=29.78 Aligned_cols=157 Identities=12% Similarity=0.044 Sum_probs=66.9
Q ss_pred CHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHH
Q 036160 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGG 429 (601)
Q Consensus 353 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 429 (601)
|.....+++..+.......-+..+..++...| .+...|..++++|..+ ..+.-..+++++. -.|++.-..|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33344444444444444444444444444433 2334444455555544 3333344444222 2222222233333
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036160 430 YVKHGLGEKALEAFRMMLDEGYVPDE------ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 503 (601)
|-+ ++.+++...|.++... +-|.. ..|.-|... -..+.+....+..++....|...-...+..+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333 4445555555554443 12210 122222211 1234445555555554443333334444444455555
Q ss_pred cCChHHHHHHhHh
Q 036160 504 AGKFTEIENFITE 516 (601)
Q Consensus 504 ~g~~~~A~~~~~~ 516 (601)
..++.+|++++..
T Consensus 218 ~eN~~eai~Ilk~ 230 (711)
T COG1747 218 NENWTEAIRILKH 230 (711)
T ss_pred ccCHHHHHHHHHH
Confidence 6666666666654
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.44 E-value=48 Score=25.72 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC
Q 036160 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518 (601)
Q Consensus 439 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (601)
..+-++....-.+.|++......+++|-+.+|+..|.++|+.++.+ ..+....|..++ ++..-.+++++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~ELG 136 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNELG 136 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHHhC
Confidence 4445556666678899999999999999999999999999988765 333333454443 35555666666
No 400
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.63 E-value=91 Score=31.68 Aligned_cols=104 Identities=19% Similarity=0.118 Sum_probs=69.4
Q ss_pred HHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHH
Q 036160 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 476 (601)
+...+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3445667888887766543 3567788888888888998888888877664 4556666667777665555
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC
Q 036160 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518 (601)
Q Consensus 477 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (601)
+-....+. |. . +.-..+|...|+++++.+++.+-+
T Consensus 714 la~~~~~~-g~-~-----N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 714 LASLAKKQ-GK-N-----NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHhh-cc-c-----chHHHHHHHcCCHHHHHHHHHhcC
Confidence 54444443 32 2 222345566788888888887643
No 401
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.38 E-value=12 Score=32.79 Aligned_cols=27 Identities=4% Similarity=0.075 Sum_probs=15.2
Q ss_pred ceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 559 NYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 559 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
..+.+|.++.+.|+.++|.+.|.++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 334455555566666666666665553
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.04 E-value=25 Score=22.48 Aligned_cols=32 Identities=28% Similarity=0.202 Sum_probs=18.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHH
Q 036160 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459 (601)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 459 (601)
+.-++.+.|++++|.+..+.+.+ +.|+..-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 34456677777777777777766 356554333
No 403
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.35 E-value=64 Score=24.50 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLD 448 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 448 (601)
-|..|+..|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777776665
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.19 E-value=29 Score=29.78 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=35.3
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 517 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
+...|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 138 l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 138 LRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44689999999999999999999999999999999999
No 405
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.86 E-value=1.5e+02 Score=28.58 Aligned_cols=123 Identities=7% Similarity=0.026 Sum_probs=72.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhh--------HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHH
Q 036160 432 KHGLGEKALEAFRMMLDEGYVPDEIT--------FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMID 499 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~~~p~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 499 (601)
..+++.+|.++-+.....-..-|..| |-.+-.+|...|+...-..++........+.-| ....+.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 34566777666655544322223323 333344556667766666666555443234434 334566777
Q ss_pred HHHhcCChHHHHHHhHhcCCCCcHHHH-------HHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 500 ILGRAGKFTEIENFITETKLTPNALVW-------ENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~~~p~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
.|...+.++.|..+..+.. -|+..+- .-++..-.-++++..|.+.+-.++...|+
T Consensus 218 ~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 7777888888888888765 3322111 12233345667888888888888888885
No 406
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.62 E-value=1.5e+02 Score=28.56 Aligned_cols=76 Identities=13% Similarity=-0.035 Sum_probs=42.0
Q ss_pred HHHHHhcCChHHHHHHhHh-cCCCC--cHHHHHHHHHHH-HhcCChhHHHHHHHHHHhcCC-----CCCcceeehhhhhh
Q 036160 498 IDILGRAGKFTEIENFITE-TKLTP--NALVWENLLGAC-SWHGNIELDEKDAEKLLELEP-----KMESNYVFPSDISA 568 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~-~~~~p--~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~ 568 (601)
+..+.+.|-+..|.++.+- +.+.| |+......+..| .+.++++--+++.+....... .-|..-+..+-++.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 4556677777777777665 34455 344444444444 356667666666666554211 12344445555556
Q ss_pred hcCCh
Q 036160 569 TQGRW 573 (601)
Q Consensus 569 ~~g~~ 573 (601)
..++.
T Consensus 190 ~l~~~ 194 (360)
T PF04910_consen 190 RLEKE 194 (360)
T ss_pred HhcCc
Confidence 66666
No 407
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.37 E-value=1.7e+02 Score=28.93 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=47.8
Q ss_pred HHHHHHHHCCCCCCHhh--HHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcc--hhhHHHHHHHhcCCHHHHHHHHhhC
Q 036160 239 RIFYQMLLKGFKPNMCT--FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV--VGTSLVDMYDKSGCLEDAGVAFDSL 314 (601)
Q Consensus 239 ~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 314 (601)
++++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.|..++.. .-.+-+...+..|+.+-+..+++.-
T Consensus 116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g 191 (413)
T PHA02875 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191 (413)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 34444555565544321 112333344555554443333 334332211 1122333445566766666666554
Q ss_pred CCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036160 315 ANKDLF---AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354 (601)
Q Consensus 315 ~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 354 (601)
..++.. ...+.+...+..|+.+ +.+-+.+.|..++.
T Consensus 192 a~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 192 ANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 443321 1123343334555543 44455566766654
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.15 E-value=20 Score=22.24 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=19.9
Q ss_pred hhCCChhhHHHHHHhhhhcCCCCCcchHHHHHH
Q 036160 27 AESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59 (601)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 59 (601)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455566666666666666666666555555554
No 409
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.35 E-value=1.7e+02 Score=28.65 Aligned_cols=333 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred hhHHHHhhcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 036160 90 CSLVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166 (601)
Q Consensus 90 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 166 (601)
|-.+.-|...|+..+|.+..+++.. .+...=.+++.+....-.-...+.++.+-.+.|.......-.-+-+.-...+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sld 297 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLD 297 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccc
Q ss_pred ----CcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHH
Q 036160 167 ----DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242 (601)
Q Consensus 167 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 242 (601)
+...|...++.+......-+-..-+++-..-...|+.+. .+.|++ ....+|+-|..+|+..+..+.++
T Consensus 298 dl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-------~~~~IIqEYFlsgDt~Evi~~L~ 369 (645)
T KOG0403|consen 298 DLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-------DLTPIIQEYFLSGDTPEVIRSLR 369 (645)
T ss_pred cccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-------hhHHHHHHHHhcCChHHHHHHHH
Q ss_pred HHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHH-------------HHH
Q 036160 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED-------------AGV 309 (601)
Q Consensus 243 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------a~~ 309 (601)
++-.....|-..-+.+-+..=.+...-+.|..++..+.-.-+.+..+. +.+...+-...+..- |+.
T Consensus 370 DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~-~~F~mLLesaedtALD~p~a~~elalFlARA 448 (645)
T KOG0403|consen 370 DLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVE-KGFDMLLESAEDTALDIPRASQELALFLARA 448 (645)
T ss_pred HcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHH-HHHHHHHhcchhhhccccccHHHHHHHHHHH
Q ss_pred HHhhCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCc
Q 036160 310 AFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388 (601)
Q Consensus 310 ~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 388 (601)
+.+.+..| +...+..-+..-......-+.-+.+-.|+..|-+ +++++..-|--..+...-+.+
T Consensus 449 ViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeR--------llr~WGgGG~g~sVed~kdkI-------- 512 (645)
T KOG0403|consen 449 VIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGER--------LLRVWGGGGGGWSVEDAKDKI-------- 512 (645)
T ss_pred HhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccc--------hhheecCCCCcchHHHHHHHH--------
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHcCCCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 036160 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALR---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451 (601)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 451 (601)
..|+.-|...|++.+|...++++..| ..+.+.+++.+.-+.|+-...+.++++.-..|+
T Consensus 513 ----~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 ----DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred ----HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 410
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.25 E-value=1e+02 Score=26.03 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=19.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 529 LLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
.+..|.+.|.+++|.+++++..+ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34556777777777777777776 5554444
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.24 E-value=57 Score=23.44 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHH
Q 036160 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439 (601)
Q Consensus 401 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 439 (601)
..|+.+.|.+++..+. ..+..|..++.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666666 5556666666666666654444
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=59.88 E-value=1.3e+02 Score=26.89 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=27.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhh-ccCcHHHHHHHHHHHHH
Q 036160 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS-HMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 483 (601)
++..+-+.|+++++...++++...+...+..--+.+..+|- ..|....+++++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 34445556666666666666666544444444444444442 23344445555544443
No 413
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.70 E-value=5.5 Score=36.64 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=38.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHH
Q 036160 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI-KHFACMIDILGRAGKFTEI 510 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 510 (601)
..|.++.|++.|...++.+ +|....|..-..++.+.+++..|++-+....+ +.||. .-|-.-..+-.-.|+|++|
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHHH
Confidence 3455566666665555532 23333444445555555555555555554432 34441 1122122222334555555
Q ss_pred HHHhHh
Q 036160 511 ENFITE 516 (601)
Q Consensus 511 ~~~~~~ 516 (601)
...+..
T Consensus 202 a~dl~~ 207 (377)
T KOG1308|consen 202 AHDLAL 207 (377)
T ss_pred HHHHHH
Confidence 555554
No 414
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.54 E-value=1.1e+02 Score=32.05 Aligned_cols=161 Identities=13% Similarity=0.182 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHcCCC-CCC---------Hh-HHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHhh
Q 036160 391 VSTALVAMYAKCGSIDDAEAVFKGSA-LRD---------TA-SWNMMIGGYVKHGLGEKALEAFRMMLDE--GYVPDEIT 457 (601)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~---------~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~ 457 (601)
+...++-.|-...+++...++.+.+. -|| +. .|...++---+-|+-++|+.+.-.|.+. .+.||..+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 33444555555566666655554433 111 10 1222222223456777787777666653 25566543
Q ss_pred HHHHH-------HHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hHHHHHHh------Hh-cCCCCc
Q 036160 458 FVVVL-------SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK-FTEIENFI------TE-TKLTPN 522 (601)
Q Consensus 458 ~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~------~~-~~~~p~ 522 (601)
...-| ..|...+..+.|.+.|++. +.+.|+...--.+...+..+|+ ++.-.++- .. ++-+-.
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Confidence 22111 2244455566677766655 3567775543344444444443 22222211 11 111111
Q ss_pred H---HHHH---HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 523 A---LVWE---NLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 523 ~---~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
. ..|- ....+-.-.+|+.+|++..+.+.+++|
T Consensus 360 leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 360 LEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 1 1111 122333456899999999999999998
No 415
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.52 E-value=1.7e+02 Score=28.19 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=34.5
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH-HhcCChHHHHHHhHhc
Q 036160 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL-GRAGKFTEIENFITET 517 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 517 (601)
+..+.+.|-+..|.++.+-+... ...-|+.....+++.| .++++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsL-dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSL-DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhc-CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 45667788888888887777654 2222344444455555 4677777777777663
No 416
>PF15469 Sec5: Exocyst complex component Sec5
Probab=59.47 E-value=1e+02 Score=26.06 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
.-+.-+.+.|+++.+...|.+++..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3345556667777777777666554
No 417
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.15 E-value=1.3e+02 Score=26.60 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=32.2
Q ss_pred HHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 036160 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456 (601)
Q Consensus 410 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 456 (601)
.+|+-...|.+.....++..|.+ +++++|.+++.++-+.|+.|...
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH
Confidence 34444456777777777766554 56888888888888888877553
No 418
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.07 E-value=95 Score=25.07 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=37.4
Q ss_pred CcccHHHHHHHHhcCCC-chhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCC
Q 036160 217 DSVSWNALFSRFQDYES-PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267 (601)
Q Consensus 217 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 267 (601)
+...|.+++.+...... ---+..+|.-|++.+.+++..-|..++.++.+..
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 45567788887766655 3456677888888788888888888888876653
No 419
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.85 E-value=38 Score=21.03 Aligned_cols=33 Identities=9% Similarity=0.348 Sum_probs=20.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036160 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR 160 (601)
Q Consensus 128 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 160 (601)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666666666666666666555543
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.68 E-value=66 Score=23.14 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=25.7
Q ss_pred hcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHH
Q 036160 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338 (601)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 338 (601)
..|+.+.|.++++.+. +.+..|..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466777777777777 6677777777777776665444
No 421
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.67 E-value=1.5e+02 Score=27.09 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=24.0
Q ss_pred HHHHhcCCCchhHHHHHHHHHHCCCCCCHhhH
Q 036160 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256 (601)
Q Consensus 225 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 256 (601)
.....+.+++++|+..+.++..+|+..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 44556677888888888888888877766554
No 422
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=58.03 E-value=23 Score=27.12 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcCChHHHH
Q 036160 493 HFACMIDILGRAGKFTEIE 511 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~ 511 (601)
.+..|..++...|++++++
T Consensus 57 chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhhccHHHHH
Confidence 3445666667777766543
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.96 E-value=11 Score=29.37 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=12.1
Q ss_pred CchhhhHHHHHHHHHhcCCCC
Q 036160 65 GYIKAGQVVHAMAIRLGCALD 85 (601)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~ 85 (601)
|.-..|..+|..|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 444555666666666665554
No 424
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.76 E-value=1.8e+02 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHcCCC
Q 036160 393 TALVAMYAKCGSIDDAEAVFKGSA 416 (601)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~~~ 416 (601)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346667888888888888888776
No 425
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.40 E-value=2.8e+02 Score=29.98 Aligned_cols=56 Identities=4% Similarity=0.093 Sum_probs=31.2
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh-HHH---HH--HHHHHhcCChHHHHHHhHh
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK-HFA---CM--IDILGRAGKFTEIENFITE 516 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~---~l--~~~~~~~g~~~~A~~~~~~ 516 (601)
.|+......|+.++|...++++... ...+... -|. .. .......|+.++|.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 5566667778888888777777654 2222211 111 11 1223456777777666665
No 426
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.28 E-value=2.1e+02 Score=28.54 Aligned_cols=236 Identities=9% Similarity=-0.009 Sum_probs=121.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhcCC------CchhhHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCCH-HHHHH
Q 036160 340 KCFRKMRLEGIKSNEFTLASCLNGCSPV------ATLANGRLLHSIAVKT-GHL-LDMFVSTALVAMYAKCGSI-DDAEA 410 (601)
Q Consensus 340 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~-~~A~~ 410 (601)
.+|++... .-|+...+...|..|... ..+.....+++..... +.. .....|..+.-+++..... +-|..
T Consensus 303 ~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 44444433 234444444444444321 1233344444444432 222 2344555555555554443 33444
Q ss_pred HHcCCCCCCHhHHHHHHHHHHhC-CChHHH-HHHHHHHHHcCCCCCHhhHHHHHHHhhccCc-HHH--HHHHHHHHHHHh
Q 036160 411 VFKGSALRDTASWNMMIGGYVKH-GLGEKA-LEAFRMMLDEGYVPDEITFVVVLSACSHMGL-IEE--GKKHFSSIKKIY 485 (601)
Q Consensus 411 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~--a~~~~~~~~~~~ 485 (601)
+..+....+...|-.-+...... .+++-- .+.+......-..+-...|++.. .|+ ... -..++......
T Consensus 381 l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~- 454 (568)
T KOG2396|consen 381 LTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV- 454 (568)
T ss_pred hhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-
Confidence 44455555666665555544422 122211 22233333321222223333333 222 111 11223333332
Q ss_pred CCCCChh-HHHHHHHHHHhcCChHHHHHHhHhcC-CCC-cHHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCcce
Q 036160 486 GITPTIK-HFACMIDILGRAGKFTEIENFITETK-LTP-NALVWENLLGACS--WHGNIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 486 ~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
..|+.. .-+.+++.+.+.|-..+|...+.++. ++| +...|..++..-. ..-+..-+..+|+.++.....++..|
T Consensus 455 -~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 455 -IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLW 533 (568)
T ss_pred -cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHH
Confidence 345543 34567777888888889998888744 344 7777777775432 22347778888888887666777888
Q ss_pred eehhhhhhhcCChhhHHHHHHHHH
Q 036160 561 VFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 561 ~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
..+...-...|+-+.+-.++-+..
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHH
Confidence 877777777888888777755443
No 427
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.24 E-value=12 Score=34.03 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=33.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCcceee
Q 036160 490 TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWEN-LLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562 (601)
Q Consensus 490 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 562 (601)
|+..|...+....+.|.+.+.-.++.+ +...| |+..|-. ...-+...++++.+..++.+.+.++|++|..|..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 344444444444444444444444444 22233 3333322 1122344555666666666666666655555543
No 428
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.98 E-value=26 Score=35.45 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhHhcC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 494 FACMIDILGRAGKFTEIENFITETK-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
.+.|.-+|....+.|.|.+++++.. .+| ++-+-.....+....|+-++|..+......
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3444455555555555555555533 233 222223333444555555555555555544
No 429
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.66 E-value=1.4e+02 Score=26.42 Aligned_cols=81 Identities=14% Similarity=-0.023 Sum_probs=45.1
Q ss_pred HHhcCCHHHHHHHHcCCC--CCCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHH
Q 036160 399 YAKCGSIDDAEAVFKGSA--LRDT-ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEG 474 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a 474 (601)
|....+++.|..-+.+.. .|++ .-|..-+.++.+..+++.+..--.+.++ +.||.. ....+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444455666665554332 3443 3344555566666666666666555555 456654 333444455566666677
Q ss_pred HHHHHHH
Q 036160 475 KKHFSSI 481 (601)
Q Consensus 475 ~~~~~~~ 481 (601)
+..+++.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666665
No 430
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.93 E-value=98 Score=24.30 Aligned_cols=42 Identities=10% Similarity=0.160 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHH
Q 036160 438 KALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFS 479 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~ 479 (601)
.+.++|+.|..+|+--... .|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555444332 34444455555555555555554
No 431
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.72 E-value=27 Score=26.99 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=33.5
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 516 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
.+.+-|++.+....+++|.+.+|+..|.++++.+...-+....
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 3557788888888888999999999999888887766554433
No 432
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=1.6e+02 Score=26.29 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=40.9
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc
Q 036160 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPN 522 (601)
Q Consensus 459 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~ 522 (601)
....+++...|++-++++...++... .+-++..|---+.+.+..=+.++|.+-|.. +.+.|.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 33445666778888888888887764 234466665555555555577788888877 455664
No 433
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.83 E-value=62 Score=26.21 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=45.5
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC
Q 036160 37 HLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101 (601)
Q Consensus 37 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (601)
++.+.+++.|.+++.. -..++..+...++.-.|.++++.+.+.++..+..|.-..++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4556667777776543 456777777777779999999999998877766655555666666653
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.50 E-value=32 Score=22.82 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=13.9
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 483 (601)
...++.+|...|++++|.++++.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455556666666666665555543
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.26 E-value=73 Score=24.17 Aligned_cols=27 Identities=7% Similarity=0.320 Sum_probs=23.1
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 119 AWGAIITCLDQQGCCQEAAKIFNLMRE 145 (601)
Q Consensus 119 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 145 (601)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588888888888999999999888876
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.09 E-value=1.1e+02 Score=24.12 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 473 EGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 473 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
.+.++|..|... |+-.. ...|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788888888877 77666 56778888888888999988888764
No 437
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.18 E-value=1.2e+02 Score=28.28 Aligned_cols=57 Identities=11% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhC--CCCChhHH--HHHHHHHHhcCChHHHHHHhHh
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIYG--ITPTIKHF--ACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
.++....+.++.++|.++++++++... -.|+...| ...+.++...|+..++.+.+++
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 334444556677888888877765421 23443333 3344556667777777666654
No 438
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=52.92 E-value=63 Score=29.68 Aligned_cols=69 Identities=4% Similarity=-0.101 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceee-hhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF-PSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 519 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
+..|+..|...+....+.|.+.+...++.+++...|.|...|.. -..-+...++++-++.++.+-.+.+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 45588999999988888899999999999999999999999887 4455777899999999988655443
No 439
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.66 E-value=2e+02 Score=26.57 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC
Q 036160 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316 (601)
Q Consensus 237 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 316 (601)
|.++|+... .....+.++.++.+.+--+.-.++| +|+..+-..+...+...|--+
T Consensus 186 ~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~e----------- 240 (412)
T KOG2297|consen 186 AVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKE----------- 240 (412)
T ss_pred HHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHH-----------
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 036160 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396 (601)
Q Consensus 317 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 396 (601)
+.-|.+......+.+-+++-....+ .+...+++......+-.+..--|++.+...+-
T Consensus 241 ---------lvey~~~q~~~~a~kElq~~L~~q~--------------s~e~p~~evi~~VKee~k~~nlPe~eVi~ivW 297 (412)
T KOG2297|consen 241 ---------LVEYHRNQQSEGARKELQKELQEQV--------------SEEDPVKEVILYVKEEMKRNNLPETEVIGIVW 297 (412)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHh--------------ccCCCHHHHHHHHHHHHHhcCCCCceEEeeeH
Q ss_pred HHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHH---------------HHHHHHHHHcCCCCCHhhHHHH
Q 036160 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA---------------LEAFRMMLDEGYVPDEITFVVV 461 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---------------~~~~~~m~~~~~~p~~~~~~~l 461 (601)
.+......+.+-.++..+-.-+....|.-|+.+++..|+.+.. .+.|++....=.+.+..+=..+
T Consensus 298 s~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~I 377 (412)
T KOG2297|consen 298 SGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETI 377 (412)
T ss_pred hhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HHHhhccCcHHHHHHHHHHHHH
Q 036160 462 LSACSHMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~ 483 (601)
+.-|-.......-.-+++.|..
T Consensus 378 L~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 378 LKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHhccccccHHHHHHHHHH
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.66 E-value=1.5e+02 Score=27.31 Aligned_cols=44 Identities=5% Similarity=0.091 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHH
Q 036160 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180 (601)
Q Consensus 137 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 180 (601)
.++++.|.+.++.|.-..|..+.-.+.+.=.+..+..+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35666667777777777777766666776677777777777654
No 441
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.46 E-value=13 Score=33.60 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=44.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHH
Q 036160 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583 (601)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 583 (601)
..+.|+.++|..+++.++.+.|.++.+..-++.......+.-+|-.+|-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 357899999999999999999999999999988888888888887776643
No 442
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=51.17 E-value=21 Score=28.64 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=42.6
Q ss_pred HHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhh
Q 036160 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575 (601)
Q Consensus 508 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 575 (601)
+.|.++.+-|+ . ....-.........|++..|.++...++..+|+|..+-...+.+|...|.-.+
T Consensus 58 ~~A~~~v~l~G-G--~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG-G--ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT-C--HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45566666665 2 22333445556788999999999999999999988888888877776655443
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.93 E-value=35 Score=22.65 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc
Q 036160 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517 (601)
Q Consensus 472 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (601)
+...++++.++.. .-|....-.++.+|...|++++|.++++++
T Consensus 7 ~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 7 EELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444332 223334445677777888888888777764
No 444
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.88 E-value=1.1e+02 Score=23.18 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=50.4
Q ss_pred cCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHH
Q 036160 64 SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143 (601)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 143 (601)
....++|..+.+.+...+. -...+-.+.+..+...|++++|+..=.....||...|-+|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3466788888888877553 233344444566778888988855555555688887766643 5777777787777777
Q ss_pred HHcC
Q 036160 144 RESS 147 (601)
Q Consensus 144 ~~~~ 147 (601)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6654
No 445
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=50.02 E-value=59 Score=31.72 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=29.2
Q ss_pred hHhcCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 514 ITETKLTPN--ALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 514 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
|....+.|. ..++...+..+.+.+|+..|-.+.++++++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 444445563 456677788889999999999999999999884
No 446
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.57 E-value=1.5e+02 Score=25.97 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=9.4
Q ss_pred HHHHHhCCChHHHHHHHHHH
Q 036160 427 IGGYVKHGLGEKALEAFRMM 446 (601)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m 446 (601)
|......|+.+.|++....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33344455555555544443
No 447
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.49 E-value=1.5e+02 Score=30.78 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHCCCCCCHhhH
Q 036160 232 ESPDQGLRIFYQMLLKGFKPNMCTF 256 (601)
Q Consensus 232 ~~~~~a~~~~~~m~~~g~~p~~~t~ 256 (601)
+++.+|.+.+-.+......|...-.
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~ 533 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWP 533 (566)
T ss_dssp -------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHH
Confidence 4455555555555544444444433
No 448
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.09 E-value=2e+02 Score=25.75 Aligned_cols=57 Identities=7% Similarity=-0.083 Sum_probs=33.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhc-CCCchhhHHHHHHHHH
Q 036160 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS-PVATLANGRLLHSIAV 381 (601)
Q Consensus 325 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 381 (601)
++...-+.|+++++...++++...+...+..--+.+-.+|- ..|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 45566778888888888888888876666655555544442 2233444455544444
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.84 E-value=40 Score=30.88 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=32.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 036160 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360 (601)
Q Consensus 321 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 360 (601)
-|+..|....+.||+++|+.++++....|+.--..+|-..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3778899999999999999999999999987666565433
No 450
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.70 E-value=1.9e+02 Score=25.45 Aligned_cols=93 Identities=22% Similarity=0.236 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHhhHH--HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH
Q 036160 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP---DEITFV--VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495 (601)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 495 (601)
.-.|.|+--|.-+..+.+|.+.|.. +.|+.| +..++. .-+......|+.++|++....+... -+..|.+.+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 3455555555555555556555543 334555 223333 3455667788888888877766433 2333332322
Q ss_pred HHHH----HHHhcCChHHHHHHhHh
Q 036160 496 CMID----ILGRAGKFTEIENFITE 516 (601)
Q Consensus 496 ~l~~----~~~~~g~~~~A~~~~~~ 516 (601)
.|.. =+.|.|..++|+++.+.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2221 24577778888887776
No 451
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.66 E-value=1.1e+02 Score=24.87 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036160 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403 (601)
Q Consensus 341 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (601)
+.+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44556667776665543 345555555555778888888888776666555554555555554
No 452
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.46 E-value=2.3e+02 Score=26.29 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------cCCHHHH
Q 036160 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK----------CGSIDDA 408 (601)
Q Consensus 339 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A 408 (601)
.++|+.|.+.++.|.-..|.-+.-.+++.=.+..+..+|+.+...... +..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777888888888888877777777777778888888877653222 3444444332 3666666
Q ss_pred HHHHcCCCCCCHhHH
Q 036160 409 EAVFKGSALRDTASW 423 (601)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (601)
.++++.-...|....
T Consensus 338 mkLLQ~yp~tdi~~~ 352 (370)
T KOG4567|consen 338 MKLLQNYPTTDISKM 352 (370)
T ss_pred HHHHhcCCCCCHHHH
Confidence 666666555454433
No 453
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=48.39 E-value=1.3e+02 Score=23.51 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHH-HHHHHHHHhcCChhHHHHHHHHH
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVW-ENLLGACSWHGNIELDEKDAEKL 549 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~ 549 (601)
..+..+++.++.=.|..++|.+++...+..+.-... ..++..|.+..+-++-.++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 445566677777777777777777776655543333 34666777776666655555443
No 454
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.35 E-value=1.3e+02 Score=31.64 Aligned_cols=101 Identities=9% Similarity=0.113 Sum_probs=62.5
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh----------hHHHHHHHhhccCcHHHHHHHHHHHHHHh-CC
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI----------TFVVVLSACSHMGLIEEGKKHFSSIKKIY-GI 487 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 487 (601)
...+...++-.|....+++..+++.+.+.. -||.. .|...+.-=-+-|+-++|+...-.+.+.. .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 445566677788888899999999988886 34321 23333333345678888888777776652 34
Q ss_pred CCChhHHHHHHHH---------HHhcCChHHHHHHhHh-cCCCCcHH
Q 036160 488 TPTIKHFACMIDI---------LGRAGKFTEIENFITE-TKLTPNAL 524 (601)
Q Consensus 488 ~p~~~~~~~l~~~---------~~~~g~~~~A~~~~~~-~~~~p~~~ 524 (601)
.||.. ....+. |..++..+.|.+.+++ ..+.|...
T Consensus 277 apDm~--Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 277 APDMY--CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred CCcee--eeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 45533 222222 3344566778888887 55677543
No 455
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.35 E-value=79 Score=30.29 Aligned_cols=137 Identities=11% Similarity=0.060 Sum_probs=87.1
Q ss_pred CCCHhhHHHHHHH--hhccCcHHHHHHHHHHHHHHhCCCCChh--------HHHHHHHHHHhcCChHHHHHHhHh----c
Q 036160 452 VPDEITFVVVLSA--CSHMGLIEEGKKHFSSIKKIYGITPTIK--------HFACMIDILGRAGKFTEIENFITE----T 517 (601)
Q Consensus 452 ~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~----~ 517 (601)
.|....|..++-. +..+.++.+|.++-+...... ..-+.. +|-.+...|...|+...-..++.. .
T Consensus 121 ~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 121 PAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 3334455555443 334577888888776654431 122222 333344556677887777777664 2
Q ss_pred CCCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCC--CcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 518 KLTP----NALVWENLLGACSWHGNIELDEKDAEKLLE--LEPKM--ESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 518 ~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
.+.- .....|.|++.|...+-++.|..+..+..- ...++ ....+.++.+-.-++++..|.+++-....+.|.
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 2332 355678888889999999999998887662 12222 234456778888899999999999988776553
No 456
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.27 E-value=15 Score=20.40 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCcceeeh
Q 036160 538 NIELDEKDAEKLLELEPKMESNYVFP 563 (601)
Q Consensus 538 ~~~~A~~~~~~~~~~~p~~~~~~~~l 563 (601)
.++.|..+|++.+...| ++..|...
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 45677777777777776 44544433
No 457
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=48.10 E-value=1.3e+02 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=10.8
Q ss_pred HHHHHHHhhccCcHHHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~ 477 (601)
+..|..++...|++++++.-
T Consensus 58 hA~Ls~A~~~Lgry~e~L~s 77 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQS 77 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHH
Confidence 44455566666666665543
No 458
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=47.74 E-value=1.8e+02 Score=24.83 Aligned_cols=159 Identities=8% Similarity=0.048 Sum_probs=0.0
Q ss_pred HcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHH--------CCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC-
Q 036160 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY--------GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH- 215 (601)
Q Consensus 145 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 215 (601)
+.|..++...++.++..+.+..-...-...+-.+..+ +...+......=+..|.+.||+.+--.+|-.+..
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred ------------------------CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhH
Q 036160 216 ------------------------QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271 (601)
Q Consensus 216 ------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 271 (601)
+..+.|..+..+-++.-..+++.+.+---..- +++-.|-+..++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGi----------S~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGI----------SLMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHH----------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHccCCCCcc--------------hhhHHHHHHHhcCCHHHHHHHHhh
Q 036160 272 GKQLHAHTIKHSLDGNHV--------------VGTSLVDMYDKSGCLEDAGVAFDS 313 (601)
Q Consensus 272 a~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~ 313 (601)
+..+++.+.+..+.-+.. +.|.-...+.++|.++.|..++++
T Consensus 151 GrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 459
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.70 E-value=3.6e+02 Score=28.10 Aligned_cols=27 Identities=7% Similarity=-0.007 Sum_probs=18.0
Q ss_pred cHHHHHHHHhhCCChhhHHHHHHhhhh
Q 036160 18 SWNALLNGYAESGDGQKVMHLFCSMKD 44 (601)
Q Consensus 18 ~y~~li~~~~~~~~~~~a~~~~~~m~~ 44 (601)
.|-..+..+.-.|.++.|.+++....+
T Consensus 150 ~FW~~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 150 DFWDYVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH-TTTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHhccc
Confidence 344478888888888888888855443
No 460
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.38 E-value=26 Score=27.53 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=24.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 036160 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 464 (601)
.+.|.-..|..+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3446667799999999999988874 5556554
No 461
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=46.20 E-value=1.4e+02 Score=26.40 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCC
Q 036160 523 ALVWENLLGACS---------WHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 523 ~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~ 555 (601)
...|..++..+. ..++...|..+++++++++|+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 345555555553 345778999999999999984
No 462
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=45.91 E-value=2.8e+02 Score=26.68 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCChHHHHHHhHhcCCCC------c--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-------c
Q 036160 495 ACMIDILGRAGKFTEIENFITETKLTP------N--ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES-------N 559 (601)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~ 559 (601)
..|...+-.+|+.++|..++.++.++. . ....-.-++.|...+||-.|--+-++.....-+.+. .
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 456677788889999988888754221 1 122223356778888888888887777654333332 3
Q ss_pred eeehhhhhhhcCChhhHHHHHHHHHhcCCcCCCceeEEE
Q 036160 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598 (601)
Q Consensus 560 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 598 (601)
|..+.....+.+.+=++-++++...+-|..++..--|++
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 445666666788888888888888776666664444443
No 463
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=45.82 E-value=4.2e+02 Score=28.61 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 036160 122 AIITCLDQQGCCQEAAKIFNLMRE 145 (601)
Q Consensus 122 ~li~~~~~~~~~~~a~~~~~~m~~ 145 (601)
.++..+.+.|+.+.|.+.+++...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 567778899999999999887765
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.28 E-value=38 Score=31.05 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=23.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 036160 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155 (601)
Q Consensus 120 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 155 (601)
|+.-|....+.||+++|+.++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 466777777777777777777777776655444444
No 465
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.91 E-value=3.3e+02 Score=27.16 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=95.7
Q ss_pred HHhCCChHHHHHHHHHHHHcC-CCCCHh-------hHHHHHH-HhhccCcHHHHHHHHHHHHHHhCCCCChhH--HHHHH
Q 036160 430 YVKHGLGEKALEAFRMMLDEG-YVPDEI-------TFVVVLS-ACSHMGLIEEGKKHFSSIKKIYGITPTIKH--FACMI 498 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~-~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~ 498 (601)
-.-.|++.+|++-...|.+-- -.|.+. ....++. -+...+-++.|..-|....+. .-.-|... -..++
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLA 411 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHH
Confidence 345789999999988887631 133321 1222332 345678899999988887665 23334322 23456
Q ss_pred HHHHhcCChHHHHHHhHhcCCCCcHHHHH----------HHHHHHHhcCChhHHHHHHHHHHhcCC-C-----CCcceee
Q 036160 499 DILGRAGKFTEIENFITETKLTPNALVWE----------NLLGACSWHGNIELDEKDAEKLLELEP-K-----MESNYVF 562 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~----------~l~~~~~~~g~~~~A~~~~~~~~~~~p-~-----~~~~~~~ 562 (601)
-.|.+.|+-+.--++++.++ +|+..++. .-+-.....+++.+|...+.+.+++.- . ..-....
T Consensus 412 i~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 77899999888888888876 44322221 111123578999999999999998751 0 1222335
Q ss_pred hhhhhhhcCChhhHHHHHHH
Q 036160 563 PSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 563 l~~~~~~~g~~~~A~~~~~~ 582 (601)
|+.+....|+..|+.....-
T Consensus 491 Ls~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHHhcchHHHHhccch
Confidence 67777888998888776543
No 466
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.90 E-value=4.1e+02 Score=28.20 Aligned_cols=120 Identities=14% Similarity=0.040 Sum_probs=58.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHh--hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036160 430 YVKHGLGEKALEAFRMMLDEGYVPDEI--TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 507 (601)
+.--|+-++|-.+.++|.... .|-.. -...+..+|+-.|+.....+++.-.... ..-|+.-...+.-++.-..++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEecCh
Confidence 444566666777777776542 22211 1233445666666666666655544432 233333333333344444555
Q ss_pred HHHHHHhHhcC--CCCcHHHH--HHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 508 TEIENFITETK--LTPNALVW--ENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 508 ~~A~~~~~~~~--~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
+....+.+-+. ..|.+..- -.|+-+|...|+ .+|+.+++.+.. +|
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~ 636 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DP 636 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-Ch
Confidence 55555544332 34443322 233344444454 367777776665 44
No 467
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.86 E-value=1.3e+02 Score=29.26 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=59.5
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh----------------hHHHHHHHhhccCcHHHHHHHHHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI----------------TFVVVLSACSHMGLIEEGKKHFSSIK 482 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~ 482 (601)
+...-..++.++....+..+.++..+. |..|+.. +...|++..+-.||+..|+++++.+.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~----~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKR----GEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhc----cCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Confidence 333334455566666655555444433 3455542 23455677888899999999988652
Q ss_pred HH----hCCCCC--hhHHHHHHHHHHhcCChHHHHHHhHhcC
Q 036160 483 KI----YGITPT--IKHFACMIDILGRAGKFTEIENFITETK 518 (601)
Q Consensus 483 ~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (601)
-. +.-.|. +.++-.++-+|.-.+++.+|.+.|..+-
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111122 4567778888888899999999888754
No 468
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=44.03 E-value=2.8e+02 Score=26.10 Aligned_cols=127 Identities=10% Similarity=0.096 Sum_probs=84.5
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhh------ccCcHHHHHHHHHHHHHHhCCCCC
Q 036160 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS------HMGLIEEGKKHFSSIKKIYGITPT 490 (601)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~p~ 490 (601)
..|...|+.-+ ++++..++++...++ .|.+......|.++- ..-+|.....+|+.+... .|+
T Consensus 261 dQDr~lW~r~l--------I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apS 328 (415)
T COG4941 261 DQDRSLWDRAL--------IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APS 328 (415)
T ss_pred ccchhhhhHHH--------HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCC
Confidence 34666666433 577888888888876 488888777776552 234688888888877654 566
Q ss_pred hh-HHHHHHHHHHhcCChHHHHHHhHhcCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 491 IK-HFACMIDILGRAGKFTEIENFITETKLTPN----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 491 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
+. +.|- ..++.+..-.+.++..++-++-.|. ...+..-...+.+.|..++|...|++++++.++.
T Consensus 329 PvV~LNR-AVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 329 PVVTLNR-AVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred CeEeehH-HHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 43 3332 3334444446677777777654442 2233334566789999999999999999998854
No 469
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.88 E-value=1.5e+02 Score=25.04 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=9.5
Q ss_pred HHHHhcCChHHHHHHhHh
Q 036160 499 DILGRAGKFTEIENFITE 516 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~ 516 (601)
..|.+.|.+++|.+++++
T Consensus 119 ~VCm~~g~Fk~A~eiLkr 136 (200)
T cd00280 119 AVCMENGEFKKAEEVLKR 136 (200)
T ss_pred HHHHhcCchHHHHHHHHH
Confidence 334555555555555555
No 470
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.99 E-value=3.1e+02 Score=28.51 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCC------CCCHhHHHHHHHHHHhCCChH------HHHHHHHHHHHcCCCCCHhhHHHH
Q 036160 394 ALVAMYAKCGSIDDAEAVFKGSA------LRDTASWNMMIGGYVKHGLGE------KALEAFRMMLDEGYVPDEITFVVV 461 (601)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~m~~~~~~p~~~~~~~l 461 (601)
+|.++|...|++-++.++++... +.-...+|..++...+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 45566666666666666655433 223445677777777777653 3444444443 45577788777
Q ss_pred HHHhhccCcHHHHHHHHHHHH
Q 036160 462 LSACSHMGLIEEGKKHFSSIK 482 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~ 482 (601)
+++-...-.-.-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776554333333334444443
No 471
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.55 E-value=3.9e+02 Score=27.34 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=50.2
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHH-hcCChHHHHHHhHhc------CCCCcHHHHHHHHHHH
Q 036160 463 SACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILG-RAGKFTEIENFITET------KLTPNALVWENLLGAC 533 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~ 533 (601)
..+.+.|-+..|.+..+.+.+. .|+ +.....+++.|+ ++.+++-.++++++. ..-|+-..-..++..|
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsL---dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~ 426 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSL---DPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFF 426 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhc---CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHH
Confidence 4455667777777776665543 343 444455555553 566666666665542 2345444333444445
Q ss_pred HhcCC---hhHHHHHHHHHHhcCC
Q 036160 534 SWHGN---IELDEKDAEKLLELEP 554 (601)
Q Consensus 534 ~~~g~---~~~A~~~~~~~~~~~p 554 (601)
.+... .+.|...+.+++.+.|
T Consensus 427 l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhcCChhhHHHHHHHHHHHHHhCc
Confidence 44433 5667777777777776
No 472
>PRK12798 chemotaxis protein; Reviewed
Probab=42.23 E-value=3.4e+02 Score=26.53 Aligned_cols=188 Identities=11% Similarity=0.083 Sum_probs=120.0
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHh-hccCc
Q 036160 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY--VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC-SHMGL 470 (601)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~ 470 (601)
+.+-.....|+++-...++..-..++.. +.++.+. .-.|+.++|.+.+..+...-.++....|..|+.+- ....+
T Consensus 86 Aa~iy~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 86 AALIYLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HHHhhHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 3444445567777777777665544332 2222222 23588999999999887776666666787777764 45678
Q ss_pred HHHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChHHHH----HHhHhcCCCCc-HHHHHHHHHHHHhcCChhH
Q 036160 471 IEEGKKHFSSIKKIYGITPTIK----HFACMIDILGRAGKFTEIE----NFITETKLTPN-ALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~----~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 541 (601)
+..|+++|+..+-. .|..- ...--+......|+.+++. +++++....|- ...+..+..+..+.++-..
T Consensus 164 P~~Al~~lD~aRLl---aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~ 240 (421)
T PRK12798 164 PATALKLLDQARLL---APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR 240 (421)
T ss_pred HHHHHHHHHHHHHh---CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc
Confidence 99999999988643 45422 3333455667888888754 55666555563 3444555666666665554
Q ss_pred HHHHHHHHHhcCCC-CCcceeehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 542 DEKDAEKLLELEPK-MESNYVFPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 542 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
-..+.+-+-.++|+ ....|..++..-.-.|+.+-|.-.-++....
T Consensus 241 ~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 241 DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 44444444455664 3456667777777889999888877776643
No 473
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.84 E-value=60 Score=21.60 Aligned_cols=48 Identities=8% Similarity=0.031 Sum_probs=27.7
Q ss_pred HhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHh-----ccCchhhhHHH
Q 036160 26 YAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA-----NSGYIKAGQVV 73 (601)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~ 73 (601)
+...|++-+|-++++.+-.....+....+..+|+..+ +.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4567888888888888765433344556666665554 34555544443
No 474
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.79 E-value=1.3e+02 Score=24.48 Aligned_cols=62 Identities=10% Similarity=0.130 Sum_probs=40.2
Q ss_pred HhhhhcCCCCCcchHHHHHHHHhcc-CchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCCh
Q 036160 40 CSMKDMEKKFSKFSLSTVLKGFANS-GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA 102 (601)
Q Consensus 40 ~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (601)
+.+.+.|+.++.. -..++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455667665543 34455555554 46778899999988888766766655566667666643
No 475
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.89 E-value=3.7e+02 Score=26.58 Aligned_cols=167 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHc---CC-CCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHH
Q 036160 132 CCQEAAKIFNLMRES---SV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207 (601)
Q Consensus 132 ~~~~a~~~~~~m~~~---~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 207 (601)
..++...+++..... |+ ..+......++..+ .|+...+..+++.+...+...+......++.......+
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d----- 224 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYD----- 224 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccC-----
Q ss_pred HHHhhcCCCCcccHHHHHHHHhcC---CCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCC-----hhHHHHHHHHH
Q 036160 208 RVFEAIAHQDSVSWNALFSRFQDY---ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD-----VGFGKQLHAHT 279 (601)
Q Consensus 208 ~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~ 279 (601)
++......++.++.++ ++++.|+..+..|.+.|..|....-..+..++-..|. ...+...++..
T Consensus 225 --------~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 225 --------KDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred --------CCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhh
Q 036160 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313 (601)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 313 (601)
...|.+.........+-.++.+-+...+...++.
T Consensus 297 ~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 297 ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.38 E-value=1.3e+02 Score=25.12 Aligned_cols=63 Identities=6% Similarity=-0.074 Sum_probs=42.5
Q ss_pred HhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChh
Q 036160 40 CSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLAD 103 (601)
Q Consensus 40 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (601)
+.++..|+.++..- ..++..+...++.-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 33456676655443 3556666666777889999999998887777666555667777766543
No 477
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.01 E-value=2e+02 Score=23.35 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=38.1
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhc-cCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCc
Q 036160 141 NLMRESSVKPNQFVLTSLVRATTE-TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203 (601)
Q Consensus 141 ~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (601)
+.+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455667766655433 3344443 345667888888888877666666555556666666654
No 478
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.99 E-value=1.2e+02 Score=25.74 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=61.0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC---CCC--cHHHHHHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK---LTP--NALVWENLLGA 532 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~ 532 (601)
+..++..-.+......+..++++..-.+.++ .-+.-+.+.|+++.++..+.+.. -.. ...++..+..-
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~flF~LP-------~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~e 132 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRFLFNLP-------SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSE 132 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344444445555666677766665544332 23455677899988888887643 011 23333332221
Q ss_pred HHh-cCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCCCceeEEE
Q 036160 533 CSW-HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598 (601)
Q Consensus 533 ~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 598 (601)
+-. .+++ ...+++++.. |. ...++..++.+.+.+.++..+|.+.|+.
T Consensus 133 ve~ii~~~--r~~l~~~L~~--~~---------------~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 133 VEKIIEEF--REKLWEKLLS--PP---------------SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred HHHHHHHH--HHHHHHHHhC--CC---------------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 111 0111 1122222222 21 5567778888888888888888877763
No 479
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.28 E-value=89 Score=28.27 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=43.3
Q ss_pred HHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 498 IDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
=..+.++++++.|....++ +.+.| |+.-+..-+-.|.+.|...-|++-++..++.-|+++.+
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3456777778887777776 44545 56566666677777888778888888877777766543
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.96 E-value=1.1e+02 Score=27.66 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=9.4
Q ss_pred HHhhccCcHHHHHHHHHHH
Q 036160 463 SACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~ 481 (601)
.-|...|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3444455555555555444
No 481
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.91 E-value=3.4e+02 Score=25.64 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChHHHH
Q 036160 436 GEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA---GKFTEIE 511 (601)
Q Consensus 436 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~ 511 (601)
.+.-+.+++++.+. .|+. .....++..+.+..+.++..+.|+++... .+-+...|..+++..... -.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 35667788888886 4544 45667778888888888888889888876 223467777777665442 2355555
Q ss_pred HHhHh----c---CCC--------C--cHH---HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC
Q 036160 512 NFITE----T---KLT--------P--NAL---VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571 (601)
Q Consensus 512 ~~~~~----~---~~~--------p--~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 571 (601)
..|.+ + ... | +.. ++..+...+...|-.+.|..+++.++|++=-.|.....-.
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~------- 195 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSS------- 195 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccccccc-------
Confidence 55554 1 101 1 112 2222333346889999999999999997532222222111
Q ss_pred ChhhHHHHHHHHHhcCCcCCC
Q 036160 572 RWNDFSGVRALLSSQGIKKEP 592 (601)
Q Consensus 572 ~~~~A~~~~~~~~~~~~~~~~ 592 (601)
..+..+.|+..-+.++....
T Consensus 196 -~~~~~~~fe~FWeS~vpRiG 215 (321)
T PF08424_consen 196 -FSERLESFEEFWESEVPRIG 215 (321)
T ss_pred -HHHHHHHHHHHhCcCCCCCC
Confidence 11556666666666665443
No 482
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.70 E-value=5.5e+02 Score=27.93 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCccc-HHHHHHHHHhcCCh
Q 036160 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA-YTAIITSYAQAGEA 335 (601)
Q Consensus 257 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ll~~~~~~g~~ 335 (601)
.++...+...|+.+....+-..+.. |..++..+...+.+++|++++..-..+.... |...+ ....+
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~L----i~~~p 574 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPEL----ITHSP 574 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHH----HhcCc
Confidence 3344444555666655554444432 3567777888888888888887764332211 11111 11122
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC---chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036160 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA---TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404 (601)
Q Consensus 336 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (601)
.+....+..+.. ..+..-...++.-+.+.+ ....+..+.+.....-...++..+|.++..|.+..+
T Consensus 575 ~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 575 KETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 222222222211 122222333333343332 223344444444444344567777777777766544
No 483
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.06 E-value=53 Score=34.86 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036160 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512 (601)
Q Consensus 433 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 512 (601)
.+++++.+.+.+...--| .++|.-+.+.|.++-|+.+.+.=..+ ......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Q ss_pred HhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 513 FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 513 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
.-.++. |...|..|+....++|+.+-|+.+|+ ....+..|.-+|.-.|+.++-.++-+-...++
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ--------~~knfekLsfLYliTgn~eKL~Km~~iae~r~ 728 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQ--------RTKNFEKLSFLYLITGNLEKLSKMMKIAEIRN 728 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHH--------HhhhhhheeEEEEEeCCHHHHHHHHHHHHhhh
No 484
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.47 E-value=80 Score=18.49 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
+|..|+..-...++++.|.+=+++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5666777777777888888887777764
No 485
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.13 E-value=4.4e+02 Score=26.04 Aligned_cols=44 Identities=7% Similarity=-0.083 Sum_probs=20.3
Q ss_pred ChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHH
Q 036160 85 DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128 (601)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 128 (601)
+..+-.....++...+.......+..-+..++...-...+.++.
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44445555555555555444444444444444433333334443
No 486
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.05 E-value=1.2e+02 Score=27.38 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhHhcC--------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036160 494 FACMIDILGRAGKFTEIENFITETK--------LTPNALVWENLLGACSWHGNIELDEKDAEKL 549 (601)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 549 (601)
...++.-|.+.|++++|.++|+.+. ..+...+...+..++.+.|+.+......-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677888888888888888742 1233445555566666677766665554433
No 487
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.93 E-value=76 Score=24.30 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=22.6
Q ss_pred HHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccC
Q 036160 22 LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65 (601)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 65 (601)
++..+...+..-.|.++++.+.+.+..++..|....|..+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444555556666666655554445444444444554444
No 488
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.53 E-value=7.1e+02 Score=28.26 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=10.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 036160 425 MMIGGYVKHGLGEKALEAFRMMLD 448 (601)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~m~~ 448 (601)
..++.+-.++-.+.+.++-..+++
T Consensus 988 kv~rlle~hn~~E~vcQlA~~AIe 1011 (1480)
T KOG4521|consen 988 KVVRLLEEHNHAEEVCQLAVKAIE 1011 (1480)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 489
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.28 E-value=3.2e+02 Score=24.27 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHH
Q 036160 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473 (601)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 473 (601)
.-++.|...-++.-|....+++.+|=.. -. -+--|.+..+.+--.++.+-....+++-+......++ +...|+..+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQS-RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQS-RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHHh-hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 3456677777777777777766655211 11 1222444444333334444444455555555555554 557888888
Q ss_pred HHHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhcCChHHHHHHhHh---cCCCCc
Q 036160 474 GKKHFSSIKKIYGI-----------TPTIKHFACMIDILGRAGKFTEIENFITE---TKLTPN 522 (601)
Q Consensus 474 a~~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~ 522 (601)
|...++.-...+|. .|.+.....++..+. .+++++|.+++.+ +++.|.
T Consensus 211 alNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 88888776544332 456665666665543 4678888888886 555663
No 490
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.27 E-value=4.8e+02 Score=26.29 Aligned_cols=14 Identities=7% Similarity=-0.149 Sum_probs=6.8
Q ss_pred cCCChhHHHHHHhc
Q 036160 98 KCGLADNALKVFYR 111 (601)
Q Consensus 98 ~~~~~~~A~~~~~~ 111 (601)
..|+.+-...+++.
T Consensus 117 ~~~~~~iv~~Ll~~ 130 (480)
T PHA03100 117 KSNSYSIVEYLLDN 130 (480)
T ss_pred ccChHHHHHHHHHc
Confidence 44555544444443
No 491
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.07 E-value=3.5e+02 Score=24.62 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=62.0
Q ss_pred HHhcCChhHHHH----HHHHHHHcCCCCCHHHHHHHHHhhcCCCchh-hHHHHHHHHHH---hCC--CCchhHHHHHHHH
Q 036160 329 YAQAGEAEMALK----CFRKMRLEGIKSNEFTLASCLNGCSPVATLA-NGRLLHSIAVK---TGH--LLDMFVSTALVAM 398 (601)
Q Consensus 329 ~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~l~~~ 398 (601)
+.+.|+...|.+ +++-..+.+.+++......++..+...+.-+ .-..+.+.+++ .+- .-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 444555444333 3333344456666655454444433322111 12222222222 221 2356777788888
Q ss_pred HHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhH-HHHHHHhhccCcHHHHHHH
Q 036160 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF-VVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~ 477 (601)
|.+.+++.+|+..|-....++...+..++.-.... |.+.+...| ...+--|.-.++...|...
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~----------------~~~~e~dlfi~RaVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK----------------GYPSEADLFIARAVLQYLCLGNLRDANEL 163 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH----------------TSS--HHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh----------------cCCcchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998888876544333322222222221212 222222222 2222335566788888887
Q ss_pred HHHHHHH
Q 036160 478 FSSIKKI 484 (601)
Q Consensus 478 ~~~~~~~ 484 (601)
++...+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 492
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.02 E-value=1.2e+03 Score=30.63 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 320 FAYTAIITSYAQAGEAEMALKCFRKMRL 347 (601)
Q Consensus 320 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 347 (601)
.....++.++..--...+|..++..+..
T Consensus 2633 ~~h~~lL~~~QqivEl~Ea~~I~s~l~~ 2660 (3550)
T KOG0889|consen 2633 HGHVPLLQAFQQIVELQEAAQIYSDLND 2660 (3550)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344556666665556666666655543
No 493
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.76 E-value=2.5e+02 Score=27.45 Aligned_cols=58 Identities=16% Similarity=-0.032 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHH
Q 036160 424 NMMIGGYVKHGLGEKALEAFRMMLDE------GYVPD-EITFVVVLSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 481 (601)
-.|++.++-.||+..|+++++.+.-. .+.+- ..+|..+.-+|...+++.+|.+.|..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777776544211 11221 124555666677777777777777654
No 494
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.09 E-value=4.1e+02 Score=25.78 Aligned_cols=125 Identities=14% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc------CChHHHHHHhHhcCCCCcHHHHHHHHHH-
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA------GKFTEIENFITETKLTPNALVWENLLGA- 532 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~p~~~~~~~l~~~- 532 (601)
..+..+.+.+++..|.++|+.+... ..+|+...+-..+..+++. -++++|.+.++++...-+...+..+-..
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~ 213 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDEL 213 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHH
Q ss_pred --HHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhh------cCChhhHHHHHHHHHh
Q 036160 533 --CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT------QGRWNDFSGVRALLSS 585 (601)
Q Consensus 533 --~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~ 585 (601)
..+....-.+.....++....-....++..+..++.. +|++++|...+-+..+
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 214 EDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 495
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.52 E-value=4.1e+02 Score=24.97 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHh
Q 036160 493 HFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
.+......|++-|+.+.|.+.+.+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 334444555555555555555543
No 496
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.41 E-value=1.1e+02 Score=20.69 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=23.7
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhh
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 466 (601)
....++.++...++..-.+.++..+.++...|. .+..+|.--++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 334455555555555555666666666666552 33444444444443
No 497
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.41 E-value=1.3e+02 Score=29.07 Aligned_cols=19 Identities=0% Similarity=-0.143 Sum_probs=8.5
Q ss_pred HHHHHHhcCChHHHHHHhH
Q 036160 497 MIDILGRAGKFTEIENFIT 515 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~ 515 (601)
++-+|.-.|++.+|.+.|-
T Consensus 278 VGFayLmmrryadai~~F~ 296 (525)
T KOG3677|consen 278 VGFAYLMMRRYADAIRVFL 296 (525)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 498
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=33.14 E-value=7e+02 Score=27.53 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 437 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
+.-.+.|.++..---.-|..++..-..-+...|++-.|.+++.++.+..+-.++...|..++..+...|.- --..+++.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~ 1291 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKN 1291 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhh
Confidence 34445555554421122344455445555667888888888888877656777777777777777777764 33333444
No 499
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.83 E-value=2.1e+02 Score=29.63 Aligned_cols=74 Identities=9% Similarity=0.039 Sum_probs=51.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHhhccCcHH------HHHHHHHHHHHHhCCCCChhHHHH
Q 036160 425 MMIGGYVKHGLGEKALEAFRMMLDEG--YVPDEITFVVVLSACSHMGLIE------EGKKHFSSIKKIYGITPTIKHFAC 496 (601)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~p~~~~~~~ 496 (601)
+|+.+|...|++-.+.++++.....+ -+.-...|+..++.+.+.|.++ .|.+.++.. -+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 78899999999999999999988743 1222346888888888888653 344444333 35566777777
Q ss_pred HHHHHH
Q 036160 497 MIDILG 502 (601)
Q Consensus 497 l~~~~~ 502 (601)
|+++-.
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 766543
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.71 E-value=1.7e+02 Score=24.40 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=31.0
Q ss_pred HHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036160 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507 (601)
Q Consensus 446 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 507 (601)
+.+.|++++..-. .++..+...++.-.|.++++.+.+. +..++..|..--+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 3445555554433 2333333345556677777777665 4445544444445666666644
Done!