Query 036160
Match_columns 601
No_of_seqs 640 out of 2946
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 17:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4E-42 1.4E-46 356.4 33.3 484 96-589 63-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.8E-42 2.3E-46 354.7 35.0 488 4-569 72-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6E-27 2.1E-31 228.4 39.4 371 124-572 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 2E-28 6.9E-33 241.9 24.3 183 321-504 28-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 5.5E-29 1.9E-33 245.9 18.9 214 34-300 8-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-26 1.5E-30 222.3 34.3 354 226-588 7-370 (388)
7 2gw1_A Mitochondrial precursor 99.9 9.5E-25 3.2E-29 221.7 28.8 92 120-214 9-100 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.3E-23 1.1E-27 210.3 29.3 457 17-563 7-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 8.6E-23 2.9E-27 208.4 32.5 427 118-559 26-498 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.5E-22 5.3E-27 201.6 32.4 347 184-592 23-416 (450)
11 3fp2_A TPR repeat-containing p 99.9 2.7E-21 9.1E-26 197.4 34.1 437 17-523 26-495 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1.4E-21 4.7E-26 194.7 28.7 372 134-557 9-415 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 3.4E-19 1.2E-23 171.5 27.0 306 252-587 2-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 5.1E-19 1.7E-23 170.3 26.9 310 218-570 3-353 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 2.9E-16 1E-20 164.5 46.5 382 151-578 984-1376(1630)
16 3hym_B Cell division cycle pro 99.8 8.7E-19 3E-23 166.5 25.2 287 285-574 19-322 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 8.9E-16 3E-20 160.9 47.4 377 15-440 984-1375(1630)
18 2xm6_A Protein corresponding t 99.8 6.5E-17 2.2E-21 162.2 35.6 377 187-582 39-467 (490)
19 3hym_B Cell division cycle pro 99.8 2.5E-18 8.6E-23 163.3 23.2 267 317-588 20-301 (330)
20 3mkr_A Coatomer subunit epsilo 99.8 1.8E-17 6.1E-22 153.0 27.0 270 296-579 7-287 (291)
21 1fch_A Peroxisomal targeting s 99.8 1.8E-18 6.1E-23 167.1 20.8 277 300-582 37-355 (368)
22 2ooe_A Cleavage stimulation fa 99.8 1.1E-16 3.7E-21 162.3 34.4 413 150-588 11-494 (530)
23 4eqf_A PEX5-related protein; a 99.8 3.1E-18 1.1E-22 165.2 18.4 259 318-582 64-352 (365)
24 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4.2E-22 156.8 21.4 234 1-264 19-252 (449)
25 1b89_A Protein (clathrin heavy 99.8 7.4E-18 2.5E-22 158.3 19.9 350 199-588 15-387 (449)
26 2xm6_A Protein corresponding t 99.8 1.3E-15 4.5E-20 152.7 34.9 352 216-588 37-434 (490)
27 2ooe_A Cleavage stimulation fa 99.8 1.4E-15 4.8E-20 154.1 34.4 406 116-555 12-495 (530)
28 3mkr_A Coatomer subunit epsilo 99.8 1.4E-17 4.8E-22 153.7 17.1 249 326-589 6-267 (291)
29 3cv0_A Peroxisome targeting si 99.8 2.8E-17 9.6E-22 155.8 19.0 258 322-584 24-313 (327)
30 4g1t_A Interferon-induced prot 99.7 3.9E-16 1.3E-20 156.2 26.8 366 218-598 51-471 (472)
31 4eqf_A PEX5-related protein; a 99.7 2.2E-17 7.6E-22 159.2 15.4 233 354-589 65-313 (365)
32 1fch_A Peroxisomal targeting s 99.7 8.9E-17 3.1E-21 155.2 18.8 301 227-552 34-359 (368)
33 4g1t_A Interferon-induced prot 99.7 5.2E-15 1.8E-19 148.0 28.6 134 419-564 333-471 (472)
34 2pl2_A Hypothetical conserved 99.7 3.3E-16 1.1E-20 138.0 17.5 194 386-584 2-212 (217)
35 3cv0_A Peroxisome targeting si 99.7 5.3E-16 1.8E-20 147.0 17.1 274 254-555 22-318 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.7 2.8E-17 9.7E-22 166.7 7.7 151 386-537 124-286 (1134)
37 3uq3_A Heat shock protein STI1 99.7 9.4E-16 3.2E-20 139.7 16.8 224 321-587 7-237 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-17 8.2E-22 167.3 4.8 124 86-209 127-258 (1134)
39 3uq3_A Heat shock protein STI1 99.7 2.7E-15 9.4E-20 136.6 17.2 233 289-565 6-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-14 3.5E-19 134.3 19.1 240 332-580 18-269 (275)
41 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-14 4.8E-19 131.4 17.9 198 389-588 37-240 (252)
42 3u4t_A TPR repeat-containing p 99.6 1.8E-14 6.1E-19 132.4 18.1 243 292-571 7-269 (272)
43 2q7f_A YRRB protein; TPR, prot 99.6 7.7E-15 2.6E-19 132.3 14.5 194 391-587 25-223 (243)
44 2vq2_A PILW, putative fimbrial 99.6 3.2E-14 1.1E-18 126.5 18.3 199 388-588 7-213 (225)
45 3vtx_A MAMA; tetratricopeptide 99.6 2.5E-14 8.7E-19 122.6 16.6 166 419-588 4-172 (184)
46 3e4b_A ALGK; tetratricopeptide 99.6 1.1E-13 3.6E-18 136.5 22.9 371 161-585 12-420 (452)
47 2q7f_A YRRB protein; TPR, prot 99.6 2E-14 6.7E-19 129.6 16.3 214 319-571 23-241 (243)
48 1ouv_A Conserved hypothetical 99.6 2.5E-13 8.7E-18 124.7 22.5 228 318-587 5-252 (273)
49 2h6f_A Protein farnesyltransfe 99.6 4.5E-14 1.6E-18 134.6 17.0 226 320-587 98-349 (382)
50 2ho1_A Type 4 fimbrial biogene 99.6 4.2E-13 1.4E-17 121.6 21.8 204 319-560 37-246 (252)
51 3e4b_A ALGK; tetratricopeptide 99.6 1.5E-12 5.2E-17 128.2 27.0 345 57-484 9-387 (452)
52 2h6f_A Protein farnesyltransfe 99.6 2.3E-13 7.9E-18 129.7 20.1 241 288-569 97-365 (382)
53 2pl2_A Hypothetical conserved 99.6 1E-13 3.5E-18 122.0 16.3 192 318-550 4-212 (217)
54 1ouv_A Conserved hypothetical 99.5 3.2E-12 1.1E-16 117.3 25.5 225 287-556 5-255 (273)
55 4a1s_A PINS, partner of inscut 99.5 3.7E-14 1.3E-18 139.0 13.1 259 326-585 55-371 (411)
56 4abn_A Tetratricopeptide repea 99.5 3.7E-14 1.2E-18 140.8 13.1 191 388-582 101-317 (474)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.8E-14 2E-18 129.2 13.6 220 364-588 15-246 (275)
58 3vtx_A MAMA; tetratricopeptide 99.5 2E-13 6.9E-18 117.0 15.9 167 388-557 4-175 (184)
59 3u4t_A TPR repeat-containing p 99.5 2.1E-12 7.3E-17 118.4 23.7 243 253-534 3-266 (272)
60 3ro2_A PINS homolog, G-protein 99.5 1.5E-13 5.2E-18 130.5 15.6 261 326-586 12-332 (338)
61 3sf4_A G-protein-signaling mod 99.5 7.8E-14 2.7E-18 136.4 13.9 290 288-577 9-367 (406)
62 2vq2_A PILW, putative fimbrial 99.5 1.3E-12 4.4E-17 116.0 20.6 205 319-561 8-220 (225)
63 4gyw_A UDP-N-acetylglucosamine 99.5 1.3E-13 4.5E-18 142.0 15.5 162 419-585 8-173 (723)
64 4e6h_A MRNA 3'-END-processing 99.5 2.7E-10 9.2E-15 116.0 36.0 416 115-558 64-576 (679)
65 3sf4_A G-protein-signaling mod 99.5 9.4E-14 3.2E-18 135.8 9.2 292 250-541 6-365 (406)
66 3as5_A MAMA; tetratricopeptide 99.4 8.1E-13 2.8E-17 113.3 12.3 165 390-557 9-178 (186)
67 4a1s_A PINS, partner of inscut 99.4 7.6E-13 2.6E-17 129.6 13.7 270 254-554 49-374 (411)
68 4i17_A Hypothetical protein; T 99.4 1.8E-12 6E-17 115.4 14.7 166 421-589 8-212 (228)
69 2ond_A Cleavage stimulation fa 99.4 1.1E-11 3.9E-16 115.6 19.5 220 336-559 33-277 (308)
70 3as5_A MAMA; tetratricopeptide 99.4 1.9E-11 6.6E-16 104.6 19.1 169 420-591 8-178 (186)
71 2ond_A Cleavage stimulation fa 99.4 7.5E-11 2.6E-15 110.0 24.2 215 371-590 33-274 (308)
72 3nf1_A KLC 1, kinesin light ch 99.4 3.3E-13 1.1E-17 126.6 8.0 236 320-585 28-306 (311)
73 3ro2_A PINS homolog, G-protein 99.4 2E-12 6.8E-17 122.7 13.2 135 421-555 184-335 (338)
74 4i17_A Hypothetical protein; T 99.4 1.7E-11 6E-16 108.9 18.2 202 354-567 7-224 (228)
75 4e6h_A MRNA 3'-END-processing 99.4 1.5E-09 5.1E-14 110.6 34.3 446 32-501 48-584 (679)
76 3ulq_A Response regulator aspa 99.4 4.9E-11 1.7E-15 115.4 22.7 228 327-554 111-370 (383)
77 4abn_A Tetratricopeptide repea 99.4 1.9E-12 6.4E-17 128.5 12.5 180 405-589 84-290 (474)
78 3nf1_A KLC 1, kinesin light ch 99.4 1.9E-12 6.6E-17 121.3 11.9 245 287-555 26-310 (311)
79 3ulq_A Response regulator aspa 99.3 5.3E-12 1.8E-16 122.2 12.5 225 360-585 109-367 (383)
80 1hz4_A MALT regulatory protein 99.3 3.3E-10 1.1E-14 109.1 24.8 288 293-588 19-351 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.3 3.5E-11 1.2E-15 124.1 15.9 163 388-555 8-177 (723)
82 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.3E-10 4.6E-15 102.7 16.6 65 528-592 152-219 (225)
83 3q15_A PSP28, response regulat 99.3 6.3E-10 2.1E-14 107.3 22.6 225 327-551 109-364 (378)
84 4ga2_A E3 SUMO-protein ligase 99.3 5.3E-12 1.8E-16 103.5 6.3 141 427-572 4-149 (150)
85 3qky_A Outer membrane assembly 99.3 1.1E-10 3.9E-15 106.0 15.6 95 388-484 14-126 (261)
86 1qqe_A Vesicular transport pro 99.2 3E-11 1E-15 111.7 11.2 186 398-583 46-266 (292)
87 3edt_B KLC 2, kinesin light ch 99.2 4.1E-11 1.4E-15 110.4 11.3 222 364-585 11-280 (283)
88 3q15_A PSP28, response regulat 99.2 6.7E-11 2.3E-15 114.1 13.2 223 362-585 109-364 (378)
89 3mv2_B Coatomer subunit epsilo 99.2 1.3E-09 4.5E-14 98.2 19.8 244 296-561 21-291 (310)
90 3mv2_B Coatomer subunit epsilo 99.2 1.1E-09 3.8E-14 98.7 19.2 241 327-589 21-285 (310)
91 2fo7_A Synthetic consensus TPR 99.2 2.8E-10 9.5E-15 91.4 12.2 129 423-554 4-134 (136)
92 4ga2_A E3 SUMO-protein ligase 99.2 3.1E-11 1.1E-15 98.8 6.4 126 461-589 3-132 (150)
93 3qky_A Outer membrane assembly 99.2 3.5E-10 1.2E-14 102.7 14.1 167 419-587 14-225 (261)
94 2pzi_A Probable serine/threoni 99.2 6.9E-11 2.4E-15 122.7 10.3 167 400-572 402-583 (681)
95 3gyz_A Chaperone protein IPGC; 99.2 6.7E-11 2.3E-15 96.2 7.7 102 487-588 31-135 (151)
96 1hz4_A MALT regulatory protein 99.1 3.6E-09 1.2E-13 101.8 21.0 287 262-554 23-351 (373)
97 3qou_A Protein YBBN; thioredox 99.1 3.4E-10 1.2E-14 104.1 13.1 171 409-584 106-282 (287)
98 3edt_B KLC 2, kinesin light ch 99.1 2.4E-09 8.4E-14 98.3 17.3 165 389-553 85-282 (283)
99 2fo7_A Synthetic consensus TPR 99.1 3.9E-09 1.4E-13 84.5 16.4 130 457-588 3-134 (136)
100 1qqe_A Vesicular transport pro 99.1 6.2E-10 2.1E-14 102.8 12.7 173 404-587 32-229 (292)
101 2r5s_A Uncharacterized protein 99.1 2.6E-10 8.8E-15 96.5 9.2 156 424-584 10-171 (176)
102 4gco_A Protein STI-1; structur 99.1 1.8E-10 6E-15 90.9 7.5 114 451-566 8-124 (126)
103 2pzi_A Probable serine/threoni 99.1 3.6E-10 1.2E-14 117.3 11.9 153 431-588 402-565 (681)
104 2vsy_A XCC0866; transferase, g 99.1 4.8E-10 1.7E-14 114.5 12.4 159 402-564 2-169 (568)
105 4gco_A Protein STI-1; structur 99.1 4.5E-10 1.5E-14 88.6 9.4 103 487-589 8-113 (126)
106 3urz_A Uncharacterized protein 99.1 6.3E-10 2.1E-14 96.9 10.4 159 391-555 6-189 (208)
107 3urz_A Uncharacterized protein 99.0 4.1E-09 1.4E-13 91.7 14.8 161 423-589 7-189 (208)
108 3rjv_A Putative SEL1 repeat pr 99.0 7.2E-09 2.5E-13 90.4 16.2 162 418-588 16-199 (212)
109 2vsy_A XCC0866; transferase, g 99.0 6.1E-09 2.1E-13 106.3 16.9 151 434-589 3-160 (568)
110 1hh8_A P67PHOX, NCF-2, neutrop 99.0 4.1E-09 1.4E-13 92.3 12.5 130 421-556 7-154 (213)
111 2ifu_A Gamma-SNAP; membrane fu 99.0 3.5E-09 1.2E-13 98.5 12.7 218 332-578 4-253 (307)
112 2vgx_A Chaperone SYCD; alterna 99.0 4E-10 1.4E-14 91.9 5.3 101 457-559 23-125 (148)
113 3gyz_A Chaperone protein IPGC; 99.0 6.4E-09 2.2E-13 84.4 11.8 105 451-557 31-138 (151)
114 2r5s_A Uncharacterized protein 98.9 1.8E-08 6.2E-13 85.0 14.7 155 392-551 9-172 (176)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 2.6E-09 8.7E-14 99.5 9.9 195 367-584 4-222 (307)
116 2yhc_A BAMD, UPF0169 lipoprote 98.9 3E-08 1E-12 87.5 16.3 164 392-560 7-221 (225)
117 3u3w_A Transcriptional activat 98.9 5.9E-08 2E-12 89.6 19.0 161 425-585 80-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.9E-08 1E-12 86.8 16.1 133 390-523 7-154 (213)
119 3qou_A Protein YBBN; thioredox 98.9 7.9E-09 2.7E-13 94.9 12.5 135 453-590 114-252 (287)
120 3dra_A Protein farnesyltransfe 98.9 9.8E-08 3.4E-12 87.1 19.3 225 330-560 43-296 (306)
121 2uy1_A Cleavage stimulation fa 98.9 7.3E-07 2.5E-11 88.2 27.0 368 130-551 7-412 (493)
122 2e2e_A Formate-dependent nitri 98.9 2.5E-09 8.5E-14 90.5 7.6 126 430-558 20-150 (177)
123 1a17_A Serine/threonine protei 98.9 1.1E-08 3.6E-13 85.5 11.2 126 457-584 15-144 (166)
124 2xcb_A PCRH, regulatory protei 98.9 3.1E-09 1.1E-13 86.0 6.9 101 457-559 20-122 (142)
125 1p5q_A FKBP52, FK506-binding p 98.9 7.1E-09 2.4E-13 97.6 10.0 93 491-583 196-291 (336)
126 2vgx_A Chaperone SYCD; alterna 98.8 3.9E-09 1.3E-13 85.9 6.2 102 487-588 16-120 (148)
127 2vyi_A SGTA protein; chaperone 98.8 1.6E-08 5.4E-13 80.3 9.8 116 456-573 13-130 (131)
128 1hxi_A PEX5, peroxisome target 98.8 4.3E-09 1.5E-13 82.2 6.0 96 493-588 19-116 (121)
129 2c2l_A CHIP, carboxy terminus 98.8 4.5E-09 1.5E-13 96.2 7.1 189 389-585 4-198 (281)
130 4gcn_A Protein STI-1; structur 98.8 5.1E-09 1.7E-13 82.7 5.9 95 457-554 10-114 (127)
131 4f3v_A ESX-1 secretion system 98.8 4.8E-09 1.7E-13 93.2 6.3 184 401-589 18-240 (282)
132 2qfc_A PLCR protein; TPR, HTH, 98.8 3.9E-08 1.3E-12 90.8 12.7 161 423-584 78-264 (293)
133 2kck_A TPR repeat; tetratricop 98.8 1.1E-08 3.8E-13 78.7 7.7 100 491-590 6-110 (112)
134 3upv_A Heat shock protein STI1 98.8 6.8E-09 2.3E-13 82.0 6.5 95 457-553 6-102 (126)
135 2lni_A Stress-induced-phosphop 98.8 1.4E-08 4.8E-13 81.0 8.4 113 457-571 18-132 (133)
136 3rjv_A Putative SEL1 repeat pr 98.8 3.7E-07 1.3E-11 79.4 17.9 172 373-554 5-199 (212)
137 1na0_A Designed protein CTPR3; 98.8 3.6E-08 1.2E-12 77.4 10.4 114 456-571 10-125 (125)
138 2uy1_A Cleavage stimulation fa 98.8 4.2E-06 1.4E-10 82.8 26.8 100 28-145 6-117 (493)
139 3sz7_A HSC70 cochaperone (SGT) 98.8 1.1E-08 3.7E-13 85.2 6.9 108 455-564 11-120 (164)
140 3dra_A Protein farnesyltransfe 98.8 3.2E-06 1.1E-10 77.1 23.5 229 335-585 32-286 (306)
141 2qfc_A PLCR protein; TPR, HTH, 98.7 4.4E-07 1.5E-11 83.7 17.6 162 391-552 77-266 (293)
142 2e2e_A Formate-dependent nitri 98.7 4.9E-08 1.7E-12 82.4 10.3 124 465-590 20-148 (177)
143 3u3w_A Transcriptional activat 98.7 1.3E-06 4.6E-11 80.4 20.0 159 395-553 81-267 (293)
144 2xcb_A PCRH, regulatory protei 98.7 4E-08 1.4E-12 79.4 8.3 98 491-588 18-117 (142)
145 3q49_B STIP1 homology and U bo 98.7 4.1E-08 1.4E-12 78.8 8.3 101 454-556 8-110 (137)
146 3sz7_A HSC70 cochaperone (SGT) 98.7 1.9E-07 6.4E-12 77.6 12.5 99 419-521 10-110 (164)
147 2lni_A Stress-induced-phosphop 98.7 4.7E-08 1.6E-12 77.9 8.5 100 490-589 15-116 (133)
148 3upv_A Heat shock protein STI1 98.7 5.1E-08 1.7E-12 76.9 8.1 96 492-587 5-102 (126)
149 2fbn_A 70 kDa peptidylprolyl i 98.7 5.6E-08 1.9E-12 83.8 8.9 166 401-587 16-187 (198)
150 1elw_A TPR1-domain of HOP; HOP 98.7 1.2E-07 4.2E-12 73.5 10.0 107 457-565 6-114 (118)
151 1elw_A TPR1-domain of HOP; HOP 98.7 5.6E-08 1.9E-12 75.4 7.9 99 491-589 4-104 (118)
152 3gw4_A Uncharacterized protein 98.7 1.9E-07 6.4E-12 80.8 11.7 155 400-554 3-178 (203)
153 1a17_A Serine/threonine protei 98.6 7.9E-07 2.7E-11 73.9 14.6 131 420-553 13-147 (166)
154 2dba_A Smooth muscle cell asso 98.6 1.3E-07 4.6E-12 76.8 9.6 111 454-567 27-143 (148)
155 2hr2_A Hypothetical protein; a 98.6 4.4E-08 1.5E-12 78.3 6.3 108 457-564 13-143 (159)
156 2if4_A ATFKBP42; FKBP-like, al 98.6 8E-08 2.8E-12 90.4 8.7 152 420-591 179-333 (338)
157 2dba_A Smooth muscle cell asso 98.6 2.7E-07 9.4E-12 75.0 10.7 94 419-516 27-124 (148)
158 2c2l_A CHIP, carboxy terminus 98.6 2.1E-07 7.1E-12 85.1 10.5 157 419-585 3-163 (281)
159 1hxi_A PEX5, peroxisome target 98.6 2.7E-07 9.1E-12 71.9 9.5 99 457-557 19-119 (121)
160 1wao_1 Serine/threonine protei 98.6 1E-07 3.5E-12 94.2 8.6 118 461-581 12-134 (477)
161 3q49_B STIP1 homology and U bo 98.6 1.8E-07 6E-12 75.0 8.4 98 490-587 8-107 (137)
162 2xev_A YBGF; tetratricopeptide 98.6 9.1E-08 3.1E-12 75.8 6.6 99 458-559 5-112 (129)
163 4f3v_A ESX-1 secretion system 98.6 4.4E-07 1.5E-11 80.7 11.5 137 423-564 105-248 (282)
164 3gw4_A Uncharacterized protein 98.6 1.1E-06 3.7E-11 75.9 14.0 152 432-584 4-174 (203)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2.7E-07 9.1E-12 90.8 11.2 142 420-583 268-412 (457)
166 3rkv_A Putative peptidylprolyl 98.6 7.7E-08 2.6E-12 79.8 6.0 111 456-566 12-141 (162)
167 2hr2_A Hypothetical protein; a 98.5 3E-07 1E-11 73.6 8.8 96 491-586 11-131 (159)
168 2vyi_A SGTA protein; chaperone 98.5 1.9E-06 6.4E-11 68.0 13.7 118 419-539 11-130 (131)
169 3k9i_A BH0479 protein; putativ 98.5 2.6E-08 9E-13 77.3 2.6 91 468-559 3-97 (117)
170 1na0_A Designed protein CTPR3; 98.5 2.4E-06 8.3E-11 66.7 14.2 114 420-536 9-124 (125)
171 1p5q_A FKBP52, FK506-binding p 98.5 7.7E-07 2.6E-11 83.6 13.1 129 419-551 146-293 (336)
172 2kck_A TPR repeat; tetratricop 98.5 9.2E-07 3.1E-11 67.6 11.0 101 455-557 6-111 (112)
173 4gcn_A Protein STI-1; structur 98.5 5E-07 1.7E-11 71.1 9.4 97 492-588 9-114 (127)
174 3q7a_A Farnesyltransferase alp 98.5 5.2E-06 1.8E-10 76.5 16.8 177 405-584 105-329 (349)
175 1ihg_A Cyclophilin 40; ppiase 98.5 3.2E-07 1.1E-11 87.2 8.9 89 491-579 273-363 (370)
176 3dss_A Geranylgeranyl transfer 98.5 1.1E-05 3.8E-10 74.0 18.4 181 405-588 90-306 (331)
177 2xev_A YBGF; tetratricopeptide 98.4 1.3E-06 4.3E-11 69.0 10.0 89 497-585 8-104 (129)
178 2fbn_A 70 kDa peptidylprolyl i 98.4 6.1E-07 2.1E-11 77.2 8.7 146 360-510 10-175 (198)
179 1elr_A TPR2A-domain of HOP; HO 98.4 2.2E-07 7.4E-12 73.6 5.4 110 456-568 5-123 (131)
180 1elr_A TPR2A-domain of HOP; HO 98.4 5E-07 1.7E-11 71.5 7.4 114 420-534 4-123 (131)
181 3k9i_A BH0479 protein; putativ 98.4 7.7E-08 2.6E-12 74.6 2.5 82 504-585 3-89 (117)
182 3rkv_A Putative peptidylprolyl 98.4 4.3E-07 1.5E-11 75.2 7.0 102 420-523 11-130 (162)
183 1dce_A Protein (RAB geranylger 98.4 7.5E-06 2.6E-10 82.3 16.9 168 404-575 44-244 (567)
184 2if4_A ATFKBP42; FKBP-like, al 98.4 1.2E-06 4.2E-11 82.3 10.0 153 389-558 179-334 (338)
185 3ro3_A PINS homolog, G-protein 98.4 5.8E-07 2E-11 74.3 6.7 95 422-516 11-114 (164)
186 1wao_1 Serine/threonine protei 98.3 1.7E-06 5.7E-11 85.5 9.9 130 428-562 14-160 (477)
187 2l6j_A TPR repeat-containing p 98.3 1.3E-07 4.4E-12 72.5 1.5 92 490-581 3-102 (111)
188 1zu2_A Mitochondrial import re 98.3 1.7E-07 5.9E-12 74.7 2.3 90 465-556 12-124 (158)
189 3q7a_A Farnesyltransferase alp 98.3 0.00035 1.2E-08 64.4 24.3 225 330-560 65-340 (349)
190 3dss_A Geranylgeranyl transfer 98.3 1.4E-05 4.9E-10 73.3 14.6 184 401-588 41-269 (331)
191 4b4t_Q 26S proteasome regulato 98.3 6.8E-06 2.3E-10 80.6 13.5 163 422-584 57-243 (434)
192 3ro3_A PINS homolog, G-protein 98.3 8.6E-06 2.9E-10 67.0 11.8 130 456-585 10-157 (164)
193 3ma5_A Tetratricopeptide repea 98.2 2E-06 7E-11 64.1 6.0 64 522-585 6-69 (100)
194 2kat_A Uncharacterized protein 98.2 1.5E-06 5.3E-11 66.9 5.5 80 473-555 3-85 (115)
195 1ihg_A Cyclophilin 40; ppiase 98.2 2.3E-06 7.9E-11 81.3 7.0 115 456-589 224-339 (370)
196 1zu2_A Mitochondrial import re 98.2 1.3E-06 4.6E-11 69.6 4.2 87 502-588 13-122 (158)
197 1na3_A Designed protein CTPR2; 98.2 2.4E-06 8.4E-11 62.4 5.3 81 491-571 9-91 (91)
198 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.4E-05 8.1E-10 76.9 13.4 120 388-511 267-405 (457)
199 4b4t_Q 26S proteasome regulato 98.1 0.00045 1.5E-08 67.5 22.4 163 322-484 58-245 (434)
200 3bee_A Putative YFRE protein; 98.1 5.5E-06 1.9E-10 60.3 6.3 72 520-592 3-77 (93)
201 1dce_A Protein (RAB geranylger 98.0 4.6E-05 1.6E-09 76.6 13.0 155 433-591 42-226 (567)
202 3n71_A Histone lysine methyltr 98.0 6.2E-06 2.1E-10 80.7 6.5 94 492-585 352-463 (490)
203 2l6j_A TPR repeat-containing p 97.9 1.1E-05 3.6E-10 61.5 5.6 70 521-590 2-71 (111)
204 1klx_A Cysteine rich protein B 97.9 2.3E-05 8E-10 62.3 6.7 109 435-552 10-126 (138)
205 2kc7_A BFR218_protein; tetratr 97.8 8.3E-06 2.8E-10 60.7 3.0 80 497-584 6-88 (99)
206 1na3_A Designed protein CTPR2; 97.8 2.6E-05 8.8E-10 56.7 5.4 67 522-588 8-74 (91)
207 3n71_A Histone lysine methyltr 97.7 0.00035 1.2E-08 68.5 13.2 124 429-552 318-464 (490)
208 2kat_A Uncharacterized protein 97.7 2.8E-05 9.6E-10 59.7 4.5 75 438-516 3-78 (115)
209 1klx_A Cysteine rich protein B 97.7 0.00068 2.3E-08 53.7 12.1 113 468-588 8-128 (138)
210 3lvg_A Clathrin heavy chain 1; 97.7 0.00062 2.1E-08 63.9 13.0 404 15-477 82-534 (624)
211 3ly7_A Transcriptional activat 97.6 0.00044 1.5E-08 63.6 10.4 138 417-556 191-343 (372)
212 2kc7_A BFR218_protein; tetratr 97.5 7.9E-05 2.7E-09 55.2 4.5 64 528-591 5-69 (99)
213 3ma5_A Tetratricopeptide repea 97.5 0.00059 2E-08 50.4 9.0 64 419-484 6-70 (100)
214 3ly7_A Transcriptional activat 97.5 0.0016 5.6E-08 59.9 13.5 134 452-589 191-342 (372)
215 3lvg_A Clathrin heavy chain 1; 97.4 0.00028 9.7E-09 66.2 7.3 236 86-340 54-325 (624)
216 3u64_A Protein TP_0956; tetrat 97.4 0.0003 1E-08 61.8 6.9 86 508-593 180-276 (301)
217 3bee_A Putative YFRE protein; 97.4 0.00073 2.5E-08 48.9 7.8 68 488-555 3-75 (93)
218 3qww_A SET and MYND domain-con 97.3 0.00017 5.8E-09 69.4 4.4 86 467-552 310-411 (433)
219 3qww_A SET and MYND domain-con 97.2 0.00088 3E-08 64.4 9.0 85 432-516 310-407 (433)
220 3qwp_A SET and MYND domain-con 97.2 0.00035 1.2E-08 67.4 6.2 91 462-552 294-400 (429)
221 1pc2_A Mitochondria fission pr 97.1 0.0016 5.5E-08 51.3 7.7 89 469-559 12-107 (152)
222 1wy6_A Hypothetical protein ST 97.1 0.011 3.8E-07 44.5 11.0 141 430-589 17-157 (172)
223 1pc2_A Mitochondria fission pr 97.0 0.00071 2.4E-08 53.3 4.6 82 508-589 15-103 (152)
224 3qwp_A SET and MYND domain-con 96.9 0.0037 1.3E-07 60.2 9.8 91 426-516 293-396 (429)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.003 1E-07 46.9 7.1 73 491-563 5-86 (104)
226 3mkq_A Coatomer beta'-subunit; 96.7 0.085 2.9E-06 56.1 19.4 103 398-518 661-763 (814)
227 1qsa_A Protein (soluble lytic 96.6 0.67 2.3E-05 46.6 24.5 114 434-551 228-347 (618)
228 3u64_A Protein TP_0956; tetrat 96.6 0.005 1.7E-07 54.2 7.4 105 471-584 179-296 (301)
229 1nzn_A CGI-135 protein, fissio 96.6 0.032 1.1E-06 42.1 10.5 92 467-560 13-111 (126)
230 3mkq_B Coatomer subunit alpha; 96.3 0.16 5.6E-06 41.0 14.1 129 397-549 13-141 (177)
231 3mkq_A Coatomer beta'-subunit; 96.3 0.12 3.9E-06 55.0 17.3 48 297-346 661-708 (814)
232 2v5f_A Prolyl 4-hydroxylase su 96.2 0.0062 2.1E-07 45.2 5.2 68 522-589 4-78 (104)
233 4h7y_A Dual specificity protei 96.0 0.097 3.3E-06 40.6 10.5 112 417-531 10-136 (161)
234 4gns_B Protein CSD3, chitin bi 95.9 0.016 5.6E-07 59.2 7.9 54 530-583 344-397 (754)
235 4ady_A RPN2, 26S proteasome re 95.5 3.1 0.00011 43.7 27.9 38 105-145 221-258 (963)
236 4h7y_A Dual specificity protei 95.3 0.037 1.3E-06 42.9 6.0 101 454-556 12-127 (161)
237 1nzn_A CGI-135 protein, fissio 94.9 0.018 6.1E-07 43.5 3.3 70 520-589 32-106 (126)
238 1y8m_A FIS1; mitochondria, unk 94.8 0.23 7.9E-06 38.2 9.0 71 488-558 36-112 (144)
239 1wy6_A Hypothetical protein ST 94.7 1.1 3.6E-05 34.1 12.7 65 421-487 92-156 (172)
240 3mkq_B Coatomer subunit alpha; 94.4 0.7 2.4E-05 37.4 11.5 130 427-584 12-142 (177)
241 1y8m_A FIS1; mitochondria, unk 94.4 0.12 4.1E-06 39.7 6.7 70 520-589 36-109 (144)
242 3o48_A Mitochondria fission 1 93.8 0.054 1.8E-06 41.1 3.8 72 488-559 37-114 (134)
243 3o48_A Mitochondria fission 1 93.5 0.53 1.8E-05 35.7 8.6 68 452-522 37-110 (134)
244 4ady_A RPN2, 26S proteasome re 93.3 9.4 0.00032 40.2 30.4 260 193-459 380-665 (963)
245 2wpv_A GET4, UPF0363 protein Y 92.5 5.7 0.0002 35.7 16.9 132 189-331 35-177 (312)
246 3ffl_A Anaphase-promoting comp 92.5 0.96 3.3E-05 35.9 9.2 26 493-518 124-149 (167)
247 3ffl_A Anaphase-promoting comp 92.5 0.53 1.8E-05 37.4 7.7 22 527-548 126-147 (167)
248 1zbp_A Hypothetical protein VP 92.3 2.8 9.5E-05 36.4 12.6 126 428-560 5-137 (273)
249 2wpv_A GET4, UPF0363 protein Y 91.9 6.8 0.00023 35.2 19.5 167 292-484 37-217 (312)
250 2ff4_A Probable regulatory pro 91.5 0.19 6.5E-06 47.6 5.1 57 494-550 174-232 (388)
251 3txn_A 26S proteasome regulato 91.4 8.9 0.0003 35.9 16.0 55 461-515 105-163 (394)
252 4b4t_P 26S proteasome regulato 90.7 10 0.00034 36.5 16.3 186 332-517 29-244 (445)
253 1v54_E Cytochrome C oxidase po 89.7 2.5 8.5E-05 30.1 7.9 71 437-518 27-97 (109)
254 3lpz_A GET4 (YOR164C homolog); 89.2 13 0.00043 33.8 20.8 168 391-585 37-215 (336)
255 2ff4_A Probable regulatory pro 89.1 3.3 0.00011 39.1 11.3 73 424-497 175-251 (388)
256 4gns_B Protein CSD3, chitin bi 89.0 2.1 7.1E-05 44.0 10.4 52 428-481 345-397 (754)
257 1qsa_A Protein (soluble lytic 86.3 29 0.001 34.8 33.4 308 26-347 16-347 (618)
258 1v54_E Cytochrome C oxidase po 84.5 7.4 0.00025 27.8 7.9 63 132-195 25-87 (109)
259 2y69_E Cytochrome C oxidase su 84.3 6.3 0.00021 29.8 7.9 70 438-518 71-140 (152)
260 1zbp_A Hypothetical protein VP 83.7 0.76 2.6E-05 39.9 3.4 58 499-556 5-64 (273)
261 4fhn_B Nucleoporin NUP120; pro 83.3 26 0.0009 38.6 16.1 164 291-472 815-988 (1139)
262 3ltm_A Alpha-REP4; protein eng 82.5 20 0.00069 29.8 17.1 60 185-245 124-183 (211)
263 2uwj_G Type III export protein 82.4 11 0.00037 26.7 8.9 88 64-156 19-106 (115)
264 4fhn_B Nucleoporin NUP120; pro 82.2 59 0.002 35.8 18.3 80 154-233 901-986 (1139)
265 3lpz_A GET4 (YOR164C homolog); 81.9 30 0.001 31.4 22.7 166 292-483 39-215 (336)
266 2p58_C Putative type III secre 81.8 12 0.0004 26.6 9.3 87 64-155 20-106 (116)
267 2uwj_G Type III export protein 79.4 14 0.00049 26.2 9.4 59 397-458 47-105 (115)
268 2p58_C Putative type III secre 78.6 15 0.00052 26.0 9.4 59 397-458 48-106 (116)
269 4b4t_R RPN7, 26S proteasome re 78.5 8.1 0.00028 37.0 9.0 95 391-485 133-238 (429)
270 2y69_E Cytochrome C oxidase su 76.7 13 0.00044 28.2 7.4 61 134-195 70-130 (152)
271 3esl_A Checkpoint serine/threo 74.8 35 0.0012 28.2 10.3 83 406-490 61-149 (202)
272 3ltj_A Alpharep-4; protein eng 74.6 34 0.0012 28.1 17.6 91 150-245 88-178 (201)
273 4b4t_R RPN7, 26S proteasome re 73.0 23 0.00079 33.8 10.6 94 356-449 133-237 (429)
274 3eiq_C Programmed cell death p 72.2 9.2 0.00031 35.2 7.1 247 121-383 58-321 (358)
275 4b4t_P 26S proteasome regulato 71.9 71 0.0024 30.5 19.7 195 302-515 30-262 (445)
276 3mv2_A Coatomer subunit alpha; 71.2 51 0.0017 29.5 11.2 60 512-585 194-255 (325)
277 3kea_A K1L; tropism, ANK repea 70.6 33 0.0011 30.3 10.5 20 92-111 65-84 (285)
278 3esl_A Checkpoint serine/threo 69.8 14 0.00049 30.4 6.9 50 504-553 92-145 (202)
279 1wdy_A 2-5A-dependent ribonucl 68.1 60 0.0021 28.2 15.4 18 22-39 8-25 (285)
280 1wdy_A 2-5A-dependent ribonucl 67.0 64 0.0022 28.0 14.0 53 56-112 7-62 (285)
281 1k1a_A B-cell lymphoma 3-encod 66.8 50 0.0017 27.9 10.7 88 22-113 12-103 (241)
282 3jxi_A Vanilloid receptor-rela 66.0 24 0.00083 30.5 8.6 92 23-114 9-118 (260)
283 2qx5_A Nucleoporin NIC96; mRNA 61.6 60 0.002 32.8 11.0 81 325-416 300-383 (661)
284 4a1g_A Mitotic checkpoint seri 61.2 57 0.0019 25.5 9.3 53 437-490 82-135 (152)
285 3bqo_A Telomeric repeat-bindin 60.7 34 0.0012 27.9 7.2 67 507-573 94-167 (211)
286 3ltm_A Alpha-REP4; protein eng 59.5 74 0.0025 26.2 18.1 150 391-551 35-184 (211)
287 1k1a_A B-cell lymphoma 3-encod 59.1 80 0.0027 26.5 11.2 83 58-141 13-100 (241)
288 3eu9_A Huntingtin-interacting 57.0 86 0.0029 26.2 11.1 78 26-111 16-98 (240)
289 2zu6_B Programmed cell death p 56.6 19 0.00064 32.3 5.9 65 292-356 170-239 (307)
290 4a1g_A Mitotic checkpoint seri 55.2 31 0.0011 27.0 6.1 49 505-553 82-131 (152)
291 4b4t_S RPN3, 26S proteasome re 54.9 32 0.0011 33.4 7.4 23 458-480 234-256 (523)
292 2zu6_B Programmed cell death p 53.6 61 0.0021 29.0 8.7 62 393-454 170-236 (307)
293 2qx5_A Nucleoporin NIC96; mRNA 53.2 1.9E+02 0.0067 29.2 22.4 39 224-266 300-338 (661)
294 2wvi_A Mitotic checkpoint seri 52.9 84 0.0029 24.9 10.0 52 438-490 78-130 (164)
295 3jxi_A Vanilloid receptor-rela 52.6 45 0.0015 28.7 7.9 55 124-178 9-72 (260)
296 1oyz_A Hypothetical protein YI 52.4 1.2E+02 0.004 26.4 21.0 19 215-233 203-221 (280)
297 2nsz_A Programmed cell death p 52.1 53 0.0018 24.8 7.0 64 292-355 11-79 (129)
298 2ion_A PDCD4, programmed cell 51.2 72 0.0025 24.9 7.8 62 392-453 12-78 (152)
299 3bu8_A Telomeric repeat-bindin 50.9 88 0.003 26.0 8.2 57 471-527 88-151 (235)
300 3hra_A Ankyrin repeat family p 50.8 71 0.0024 25.9 8.5 50 97-151 13-66 (201)
301 4b4t_S RPN3, 26S proteasome re 49.7 19 0.00065 34.9 5.0 68 491-558 231-305 (523)
302 2nsz_A Programmed cell death p 49.3 82 0.0028 23.7 9.1 62 393-454 11-77 (129)
303 2d2s_A Exocyst complex compone 46.5 82 0.0028 26.9 8.0 28 488-515 88-115 (235)
304 2d2s_A Exocyst complex compone 46.5 54 0.0019 28.0 6.9 22 124-145 25-46 (235)
305 2fu4_A Ferric uptake regulatio 46.1 54 0.0018 22.1 5.8 61 40-101 6-67 (83)
306 3b7b_A Euchromatic histone-lys 46.0 91 0.0031 26.1 8.7 82 23-112 15-100 (237)
307 1ya0_A SMG-7 transcript varian 45.9 24 0.00082 34.3 5.2 54 529-582 158-211 (497)
308 1n11_A Ankyrin; clathrin, BAND 45.4 2E+02 0.0068 27.0 16.3 330 23-389 18-372 (437)
309 3kea_A K1L; tropism, ANK repea 44.2 1.1E+02 0.0036 26.9 9.1 136 23-170 35-176 (285)
310 2ion_A PDCD4, programmed cell 43.6 47 0.0016 26.0 5.7 64 292-355 13-81 (152)
311 3ltj_A Alpharep-4; protein eng 42.8 1.3E+02 0.0046 24.3 18.3 153 388-551 27-179 (201)
312 4ets_A Ferric uptake regulatio 42.1 95 0.0033 24.5 7.4 71 32-103 13-86 (162)
313 3ljn_A Hypothetical protein; a 42.1 1.3E+02 0.0045 27.4 9.7 16 197-212 180-195 (364)
314 2wvi_A Mitotic checkpoint seri 42.0 75 0.0026 25.2 6.5 60 68-127 77-137 (164)
315 3hra_A Ankyrin repeat family p 41.8 1.4E+02 0.0047 24.1 9.3 152 25-186 11-172 (201)
316 2xig_A Ferric uptake regulatio 37.8 89 0.0031 24.3 6.5 64 38-102 14-77 (150)
317 3mkr_B Coatomer subunit alpha; 37.7 1.5E+02 0.0053 26.5 8.5 58 514-585 187-246 (320)
318 3aji_A 26S proteasome non-ATPa 36.7 1.8E+02 0.0062 24.0 11.6 85 22-111 9-95 (231)
319 3ygs_P Procaspase 9; apoptosis 36.3 32 0.0011 24.4 3.3 39 30-72 51-89 (97)
320 3eu9_A Huntingtin-interacting 36.0 1.9E+02 0.0064 24.0 9.5 21 93-113 46-66 (240)
321 2fe3_A Peroxide operon regulat 35.7 78 0.0027 24.4 5.8 62 40-102 11-72 (145)
322 2pnn_A Transient receptor pote 35.5 1.9E+02 0.0066 24.8 9.3 98 15-114 10-126 (273)
323 4gq2_M Nucleoporin NUP120; bet 35.2 1.3E+02 0.0043 32.3 9.2 30 524-553 898-927 (950)
324 1bd8_A P19INK4D CDK4/6 inhibit 35.1 1E+02 0.0036 23.5 6.8 17 25-41 8-24 (156)
325 2w57_A Ferric uptake regulatio 35.0 1.5E+02 0.0052 22.9 7.4 62 343-405 6-68 (150)
326 4aez_C MAD3, mitotic spindle c 34.6 2.1E+02 0.0071 24.1 9.7 53 437-490 131-184 (223)
327 2fu4_A Ferric uptake regulatio 34.6 1E+02 0.0035 20.6 7.1 62 141-203 6-68 (83)
328 4aez_C MAD3, mitotic spindle c 34.2 1.3E+02 0.0046 25.2 7.2 60 68-127 131-191 (223)
329 1mzb_A Ferric uptake regulatio 34.0 1.4E+02 0.0049 22.5 7.1 61 344-405 8-69 (136)
330 1wgl_A TOLL-interacting protei 33.9 24 0.00082 22.2 2.0 46 543-589 10-55 (59)
331 2rfa_A Transient receptor pote 32.6 1.7E+02 0.0059 24.2 8.3 150 23-185 7-184 (232)
332 3ygs_P Procaspase 9; apoptosis 32.1 56 0.0019 23.1 4.0 37 302-338 51-87 (97)
333 2b7e_A PRE-mRNA processing pro 30.4 49 0.0017 20.8 3.0 36 32-67 2-38 (59)
334 3e3v_A Regulatory protein RECX 29.7 1.9E+02 0.0066 23.2 7.4 117 436-557 49-170 (177)
335 3ljn_A Hypothetical protein; a 29.5 1.6E+02 0.0055 26.8 8.1 59 295-353 57-115 (364)
336 1mzb_A Ferric uptake regulatio 29.1 1.9E+02 0.0064 21.9 7.1 61 142-203 8-69 (136)
337 3kae_A CDC27, possible protein 29.1 1.2E+02 0.004 24.3 5.5 66 464-530 71-154 (242)
338 4ets_A Ferric uptake regulatio 28.5 2.2E+02 0.0074 22.4 7.9 70 134-204 14-86 (162)
339 2w57_A Ferric uptake regulatio 28.3 2E+02 0.0068 22.2 7.1 62 141-203 6-68 (150)
340 3eyy_A Putative iron uptake re 28.2 76 0.0026 24.5 4.6 62 37-100 5-66 (145)
341 3bge_A Predicted ATPase; struc 27.9 1.6E+02 0.0054 24.2 6.3 39 229-267 18-56 (201)
342 2rfa_A Transient receptor pote 27.8 2.6E+02 0.0088 23.1 9.8 18 296-313 202-219 (232)
343 1ug3_A EIF4GI, eukaryotic prot 27.8 2.5E+02 0.0087 25.4 8.8 26 292-317 15-40 (339)
344 2o03_A Probable zinc uptake re 27.7 76 0.0026 23.9 4.4 43 58-100 17-59 (131)
345 2fe3_A Peroxide operon regulat 27.5 1.2E+02 0.0042 23.3 5.7 62 444-507 11-72 (145)
346 3b7b_A Euchromatic histone-lys 27.0 2.7E+02 0.0092 23.0 8.8 143 58-213 15-167 (237)
347 2xig_A Ferric uptake regulatio 26.8 1.7E+02 0.006 22.6 6.5 62 444-507 16-77 (150)
348 3qye_A TBC1 domain family memb 26.8 3.1E+02 0.011 24.7 9.2 106 138-243 209-319 (331)
349 2r9g_A AAA ATPase, central reg 26.8 2.7E+02 0.0091 22.9 9.4 62 324-386 16-85 (204)
350 3bge_A Predicted ATPase; struc 25.3 2.8E+02 0.0096 22.7 8.0 45 325-369 10-57 (201)
351 3mwm_A ZUR, putative metal upt 25.3 72 0.0025 24.4 3.9 47 55-101 17-63 (139)
352 1bpo_A Protein (clathrin); cla 24.9 2.1E+02 0.0074 27.2 7.5 136 73-217 348-486 (494)
353 3mwm_A ZUR, putative metal upt 24.7 1.1E+02 0.0038 23.3 4.9 48 20-67 17-64 (139)
354 1oai_A Nuclear RNA export fact 24.4 54 0.0019 20.6 2.5 23 130-152 33-56 (59)
355 2r9g_A AAA ATPase, central reg 24.4 3E+02 0.01 22.7 9.7 56 431-488 25-85 (204)
356 2etb_A Transient receptor pote 24.3 1.1E+02 0.0036 26.2 5.4 117 55-176 3-157 (256)
357 2o03_A Probable zinc uptake re 24.2 1.1E+02 0.0039 22.9 4.9 48 21-68 15-62 (131)
358 3e3v_A Regulatory protein RECX 23.8 2.8E+02 0.0097 22.2 7.9 83 439-523 86-169 (177)
359 2p1h_A APAF-1, apoptotic prote 23.0 1.9E+02 0.0066 20.0 5.7 36 200-235 49-84 (94)
360 2ijq_A Hypothetical protein; s 22.9 1.5E+02 0.0052 23.3 5.3 53 27-79 43-103 (161)
361 1n11_A Ankyrin; clathrin, BAND 22.1 4.8E+02 0.016 24.3 15.8 299 57-388 17-338 (437)
362 2qfz_A TBC1 domain family memb 21.3 4.2E+02 0.014 24.0 9.0 79 340-418 230-315 (345)
363 3aji_A 26S proteasome non-ATPa 21.2 3.4E+02 0.012 22.2 8.9 19 93-111 10-28 (231)
364 2bn5_A PSI; nuclear protein, s 21.2 75 0.0026 17.0 2.1 22 563-584 8-29 (33)
365 4gq2_M Nucleoporin NUP120; bet 21.1 5.5E+02 0.019 27.5 11.0 122 293-434 815-950 (950)
366 1bd8_A P19INK4D CDK4/6 inhibit 21.0 1.7E+02 0.006 22.1 5.7 142 58-212 6-155 (156)
367 3bu8_A Telomeric repeat-bindin 20.2 3.2E+02 0.011 22.7 6.7 67 436-505 88-161 (235)
368 3ctd_A Putative ATPase, AAA fa 20.0 3.8E+02 0.013 22.2 8.6 64 323-386 36-107 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-42 Score=356.43 Aligned_cols=484 Identities=10% Similarity=-0.067 Sum_probs=402.4
Q ss_pred hhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHH
Q 036160 96 YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175 (601)
Q Consensus 96 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 175 (601)
+.+.|....+...+..++.+++..|+.++..+.+.|++++|+.+|++|.+ ..|+..++..++.++.+.|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777888888888878899999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCC-------------------CcccHHHHHHHHhcCCCchh
Q 036160 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-------------------DSVSWNALFSRFQDYESPDQ 236 (601)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~ 236 (601)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 788999999999999999999999999965433 36789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHH--HH-HHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhh
Q 036160 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK--QL-HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313 (601)
Q Consensus 237 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 313 (601)
|.+.|++|...+ +.+...+..+...+...+..+... .+ +..+...+..+...+++.++..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999999863 223445555554444433322211 11 44444445555566677778889999999999999999
Q ss_pred CCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhH
Q 036160 314 LAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391 (601)
Q Consensus 314 ~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 391 (601)
+.+ +++.+|+.++..|.+.|++++|.++|+++...+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 987 788999999999999999999999999999875 3467789999999999999999999999998654 557889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhcc
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 468 (601)
+..++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..+|..++.+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 9999999999999999999999764 5578899999999999999999999999999863 45678999999999999
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-------CCCCc--HHHHHHHHHHHHhcCCh
Q 036160 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-------KLTPN--ALVWENLLGACSWHGNI 539 (601)
Q Consensus 469 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~ 539 (601)
|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++
T Consensus 455 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 455 GNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp TCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999999876 3446889999999999999999999999984 45786 78999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
++|++.++++++..|+++.++..++.+|...|++++|.++++++.+..+.
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999886654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-42 Score=354.68 Aligned_cols=488 Identities=9% Similarity=-0.075 Sum_probs=332.3
Q ss_pred HHHHhccCCCCCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCC
Q 036160 4 AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCA 83 (601)
Q Consensus 4 a~~~f~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (601)
+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+|+.+.. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 147 (597)
T 2xpi_A 72 ERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YN 147 (597)
T ss_dssp ----------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GG
T ss_pred CCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cc
Confidence 45566677767788888888888888888888888888875 456777888888888888888888888887754 35
Q ss_pred CChhHHhhHHHHhhcCCChhHHHHHHhcCCCC-------------------CccchHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 84 LDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-------------------DVVAWGAIITCLDQQGCCQEAAKIFNLMR 144 (601)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 144 (601)
++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.
T Consensus 148 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67888888888888888888888888854332 25667777777777777777777777777
Q ss_pred HcCCCCChhhHHHHHHHHhccCCcchh--hHH-HHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC--CCcc
Q 036160 145 ESSVKPNQFVLTSLVRATTETGDQRCG--ESI-HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSV 219 (601)
Q Consensus 145 ~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 219 (601)
+.+ +.+...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+ ++..
T Consensus 228 ~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 306 (597)
T 2xpi_A 228 MVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306 (597)
T ss_dssp HHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHH
T ss_pred HhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHH
Confidence 653 12333344444333322211111 011 22333333333344455556666666666666666665554 4455
Q ss_pred cHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHH
Q 036160 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299 (601)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (601)
+|+.++..+.+.|++++|..+|+++...+ +.+..++..++.++.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEID------------------------------------PYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcC------------------------------------cccHHHHHHHHHHHH
Confidence 55555555555555555555555554432 112233333334444
Q ss_pred hcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHH
Q 036160 300 KSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376 (601)
Q Consensus 300 ~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 376 (601)
+.|++++|..+++++.+ .+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 351 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------------- 402 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------------------------- 402 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------
T ss_pred HhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------------------
Confidence 44444444444333321 23344555555555555555555555555442
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 036160 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453 (601)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 453 (601)
. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 403 -------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 403 -------D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp -------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred -------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 1 2245566777777778888888877777543 4577889999999999999999999999999863 45
Q ss_pred CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-cHHHH
Q 036160 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIY---GITPT--IKHFACMIDILGRAGKFTEIENFITET-KLTP-NALVW 526 (601)
Q Consensus 454 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 526 (601)
+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 67899999999999999999999999997653 45777 679999999999999999999999983 3445 88999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhh
Q 036160 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 569 (601)
..++.+|.+.|++++|.+.++++++++|+++..+..++.+|..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999888754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6e-27 Score=228.43 Aligned_cols=371 Identities=13% Similarity=0.143 Sum_probs=255.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCc
Q 036160 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203 (601)
Q Consensus 124 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (601)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|+++.|...++...+.. +.+..++..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345566777888887777776642 2234445555556667777777777777766653 45566677777777777777
Q ss_pred cHHHHHHhhcCC--C-CcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHH
Q 036160 204 SYGSRVFEAIAH--Q-DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280 (601)
Q Consensus 204 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 280 (601)
++|...|+++.. | +..+|..+...+...|++++|...|+++... .|+..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~-------------------------- 135 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLY-------------------------- 135 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCT--------------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcH--------------------------
Confidence 666666665533 2 2234555555555555556665555555543 22211
Q ss_pred HccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036160 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357 (601)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 357 (601)
..+..+...+...|++++|.+.|+++.+ .+..+|..+...+...|++++|...|+++.... |
T Consensus 136 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p----- 200 (388)
T 1w3b_A 136 --------CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--P----- 200 (388)
T ss_dssp --------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--T-----
T ss_pred --------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-----
Confidence 1222233333333333333333333221 123445555666666666666666666655532 2
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCC
Q 036160 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHG 434 (601)
Q Consensus 358 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 434 (601)
.+...+..+...+...|++++|...|++.. +.+..++..+..++.+.|
T Consensus 201 -----------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 201 -----------------------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp -----------------------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -----------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence 234445566666677777777777666443 446778888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036160 435 LGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513 (601)
Q Consensus 435 ~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 513 (601)
++++|++.|+++.+. .| +..++..+..++.+.|++++|.+.++++.+. .+.+..++..++..+.+.|++++|.+.
T Consensus 252 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 252 LIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp CHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999985 45 4568999999999999999999999999876 355688999999999999999999999
Q ss_pred hHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCC
Q 036160 514 ITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572 (601)
Q Consensus 514 ~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 572 (601)
+++ +...| +..++..++.++.+.|++++|+..++++++..|+++.++..++.++...|+
T Consensus 328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 998 44556 678999999999999999999999999999999999999999988877764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2e-28 Score=241.91 Aligned_cols=183 Identities=14% Similarity=0.168 Sum_probs=169.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCc---------hhhHHHHHHHHHHhCCCCchhH
Q 036160 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT---------LANGRLLHSIAVKTGHLLDMFV 391 (601)
Q Consensus 321 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 391 (601)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4778899999999999999999999999999999999999999987654 6789999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSA----LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 467 (601)
|++|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999998765 789999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 036160 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 504 (601)
.|++++|.+++++|++. +..|+..||+.++..+.+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999988 9999999999999888753
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.5e-29 Score=245.90 Aligned_cols=214 Identities=14% Similarity=0.086 Sum_probs=162.4
Q ss_pred hHHHHHHhhhhcCCCCCc-chHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcC
Q 036160 34 KVMHLFCSMKDMEKKFSK-FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112 (601)
Q Consensus 34 ~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 112 (601)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 355566777777766554 368889999999999999999999999999999999999999999887764332
Q ss_pred CCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHH
Q 036160 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192 (601)
Q Consensus 113 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 192 (601)
.+.+.+++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.+++++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12345688999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHH
Q 036160 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272 (601)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 272 (601)
+|.+|++.|++ ++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|
T Consensus 146 lI~~~~~~g~~-------------------------------~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 146 ALFGFCRKGDA-------------------------------DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHHHHTTCH-------------------------------HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCH-------------------------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 88887777766 56666666677777777777777777777777777777
Q ss_pred HHHHHHHHHccCCCCcchhhHHHHHHHh
Q 036160 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDK 300 (601)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (601)
.+++++|.+.+..|+..+|+.++..|+.
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777666654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.4e-26 Score=222.31 Aligned_cols=354 Identities=14% Similarity=0.100 Sum_probs=281.4
Q ss_pred HHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHH
Q 036160 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305 (601)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 305 (601)
..+.+.|++++|.+.+..+.... +.+...+..+...+...|+++.|...++...+.. +.+...+..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34455666666666666665541 2233444445555566667777776666666543 345556777777777777777
Q ss_pred HHHHHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 036160 306 DAGVAFDSLAN--K-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382 (601)
Q Consensus 306 ~a~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 382 (601)
+|...|+++.+ | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+..+.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777776643 3 44567888888888899999999888887753 22344566677777888999999999888887
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhH
Q 036160 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITF 458 (601)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~ 458 (601)
.. +.+..++..+...+.+.|++++|...|+++. +.+...|..+...+...|++++|+..+++.... .|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 64 3356788889999999999999999998765 456778999999999999999999999999885 554 5688
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhc-CC-CCcHHHHHHHHHHHHh
Q 036160 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITET-KL-TPNALVWENLLGACSW 535 (601)
Q Consensus 459 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 535 (601)
..+..++...|++++|.+.++++.+. .|+ ..++..++.++.+.|++++|.+.++++ .. +++..++..++..+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999875 454 778999999999999999999999983 33 4478899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
.|++++|+..++++++..|+++.++..++.+|...|++++|...++++.+..+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999987544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.5e-25 Score=221.65 Aligned_cols=92 Identities=11% Similarity=0.000 Sum_probs=57.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHh
Q 036160 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199 (601)
Q Consensus 120 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 199 (601)
|......+.+.|++++|+..|+++.+.. |+..+|..+..++...|+++.|...++.+++.+ +.+..++..+..++..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666643 566666666666666666666666666666654 3445566666666666
Q ss_pred cCCccHHHHHHhhcC
Q 036160 200 NGRVSYGSRVFEAIA 214 (601)
Q Consensus 200 ~~~~~~a~~~~~~~~ 214 (601)
.|++++|...|+.+.
T Consensus 86 ~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 86 LGKFADAMFDLSVLS 100 (514)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 666666666666553
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.3e-23 Score=210.28 Aligned_cols=457 Identities=9% Similarity=-0.027 Sum_probs=248.5
Q ss_pred ccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHh
Q 036160 17 VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMY 96 (601)
Q Consensus 17 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (601)
..|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++.+.+.+ +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456667777888888888888888887754 677778888888888888888888888877754 33556666666777
Q ss_pred hcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhH
Q 036160 97 SKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173 (601)
Q Consensus 97 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 173 (601)
.+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-.....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------- 153 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD---------- 153 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh----------
Confidence 777777777666665543 2233333344433333333333333333333222222221111000000
Q ss_pred HHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCC-CcccHHHHHHHHhc---CCCchhHHHHHHHHHH---
Q 036160 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQD---YESPDQGLRIFYQMLL--- 246 (601)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~--- 246 (601)
.....|+.......+..+...... ..+..+ +...+......+.. .|++++|...|+++..
T Consensus 154 ------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 154 ------KQENLPSVTSMASFFGIFKPELTF-------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCC-------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred ------hccCCchhHHHHHHHhhcCHHHHH-------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 000111111111111110000000 001111 12223333333332 6777777777777665
Q ss_pred --CCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC--CCcccH
Q 036160 247 --KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN--KDLFAY 322 (601)
Q Consensus 247 --~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 322 (601)
....|+.... .+.+..++..+...+...|++++|...|+++.+ |+...+
T Consensus 221 ~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 273 (514)
T 2gw1_A 221 EQLDKNNEDEKL---------------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273 (514)
T ss_dssp HHTTTSTTCHHH---------------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHH
T ss_pred hhhccCcccccc---------------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHH
Confidence 2111211000 001122333444444555555555555544321 223445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036160 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402 (601)
Q Consensus 323 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (601)
..+...+...|++++|...++++.... +.+.. ++..+..++...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~l~~~~~~~ 317 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSS-----------------------------------VYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH-----------------------------------HHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH-----------------------------------HHHHHHHHHHHh
Confidence 556666677777777777777765532 11222 223333444444
Q ss_pred CCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHH
Q 036160 403 GSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479 (601)
Q Consensus 403 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 479 (601)
|++++|...+++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444444443321 2344566667777777788888888888877752 3345577777788888888888888888
Q ss_pred HHHHHhCCCCC----hhHHHHHHHHHHh---cCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 480 SIKKIYGITPT----IKHFACMIDILGR---AGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 480 ~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
.+.+...-.++ ...+..++.++.. .|++++|...+++ +...| +..++..++..+.+.|++++|...+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87665222222 3377788888888 8888888888887 33344 67778888888888888888888888888
Q ss_pred hcCCCCCcceeeh
Q 036160 551 ELEPKMESNYVFP 563 (601)
Q Consensus 551 ~~~p~~~~~~~~l 563 (601)
++.|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 8888776666554
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=8.6e-23 Score=208.42 Aligned_cols=427 Identities=12% Similarity=0.002 Sum_probs=266.8
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHH
Q 036160 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197 (601)
Q Consensus 118 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (601)
..|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|+++.|.+.++.+.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345666677778888888888888877753 4466777777888888888888888888887775 55667778888888
Q ss_pred HhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHC------CCCCCHhhHHHHHHHhcCCCChhH
Q 036160 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK------GFKPNMCTFIVILKACSSLSDVGF 271 (601)
Q Consensus 198 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 271 (601)
...|++++|...|+.+ ..++...+..+..+...+....|...++.+... ...|+.......+. ..+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcChHH
Confidence 8888888888888644 222222233344444455557777777777543 23344444333322 222222
Q ss_pred HHHHHHHHHHccCCCCcc---hhhHHHHHHHh--------cCCHHHHHHHHhhCCCCCcc----------cHHHHHHHHH
Q 036160 272 GKQLHAHTIKHSLDGNHV---VGTSLVDMYDK--------SGCLEDAGVAFDSLANKDLF----------AYTAIITSYA 330 (601)
Q Consensus 272 a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~----------~~~~ll~~~~ 330 (601)
+...+.. ....+.. ....+...+.. .|++++|...|+++.+.++. ++..+...+.
T Consensus 179 ~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 179 EVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 2211111 0111111 22222222222 24677788888777653322 3555556777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 036160 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410 (601)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 410 (601)
..|++++|...+++.... .|+...+..+...+...|+++.|...+..+.+... .+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHH
Confidence 788888888888888775 35567777777788888888888888887776642 356667777777777788888777
Q ss_pred HHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 036160 411 VFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487 (601)
Q Consensus 411 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 487 (601)
.|++.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+....
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 776544 3355677777777777788888888877777752 333456777777777777888887777777654211
Q ss_pred CCC----hhHHHHHHHHHHhc----------CChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 488 TPT----IKHFACMIDILGRA----------GKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 488 ~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
.++ ...+..+..++.+. |++++|...+++ +...| +...+..++..+...|++++|.+.++++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 12234445666666 777777777776 33344 566777777777777777777777777777
Q ss_pred cCCCCCcc
Q 036160 552 LEPKMESN 559 (601)
Q Consensus 552 ~~p~~~~~ 559 (601)
+.|+++..
T Consensus 491 ~~~~~~~~ 498 (537)
T 3fp2_A 491 LARTMDEK 498 (537)
T ss_dssp HC--CHHH
T ss_pred hCCCcHHH
Confidence 77765443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.5e-22 Score=201.57 Aligned_cols=347 Identities=12% Similarity=0.058 Sum_probs=217.0
Q ss_pred CCchhHHHHHHHHHHhcCCccHHHHHHhhcCC---CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHH
Q 036160 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260 (601)
Q Consensus 184 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 260 (601)
+.+...+..+...+.+.|++++|...|+.+.+ .+...|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 33455566666666666666666666655533 234445555555555566666665555555442 12233444444
Q ss_pred HHhcCCCChhHHHHHHHHHHHccCCCCc---chhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhH
Q 036160 261 KACSSLSDVGFGKQLHAHTIKHSLDGNH---VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337 (601)
Q Consensus 261 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 337 (601)
..+...|+++.|...++.+.+... .+. ..+..+...+... .+..+...+...|++++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHH
Confidence 444444444444444444443211 011 1222222211110 01122334556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-
Q 036160 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA- 416 (601)
Q Consensus 338 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 416 (601)
|+..|+++.... +.+..++..+..+|.+.|++++|.+.|+++.
T Consensus 162 A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (450)
T 2y4t_A 162 AIAFLDKILEVC------------------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASK 205 (450)
T ss_dssp HHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhC------------------------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666665532 1234445555566666666666666665543
Q ss_pred --CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHH------------HHHhhccCcHHHHHHHHHHH
Q 036160 417 --LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVV------------LSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 417 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l------------~~~~~~~~~~~~a~~~~~~~ 481 (601)
+.+..+|..+...+...|++++|+..|+++.+. .|+.. .+..+ ...|...|++++|...++.+
T Consensus 206 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 446677888888888888888888888888764 45443 34333 67788889999999999988
Q ss_pred HHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 482 KKIYGITPT-----IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 482 ~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
.+. .|+ ...+..++.++.+.|++++|+..+++ +...| +...|..++.+|...|++++|...+++++++.|
T Consensus 284 l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 284 MKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred Hhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 875 344 34678888889999999999999888 34445 678888999999999999999999999999999
Q ss_pred CCCcceeehh------------hhhhhcC-----ChhhHHHHHHH-HHhcCCcCCC
Q 036160 555 KMESNYVFPS------------DISATQG-----RWNDFSGVRAL-LSSQGIKKEP 592 (601)
Q Consensus 555 ~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 592 (601)
+++..+..++ ..|...| +.+++.+.+++ ..+..|.+.+
T Consensus 361 ~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 8888888888 5566666 66677887776 4456665554
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.7e-21 Score=197.36 Aligned_cols=437 Identities=10% Similarity=0.002 Sum_probs=281.4
Q ss_pred ccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHh
Q 036160 17 VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMY 96 (601)
Q Consensus 17 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (601)
..|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.. +.+...+..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456667777777777777777777777653 3356677777777777777777777777777654 33566666677777
Q ss_pred hcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHH
Q 036160 97 SKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176 (601)
Q Consensus 97 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 176 (601)
...|++++|...|+.+.. +....+..+..+...+...+|...++.+.... |+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~------------------------ 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR------------------------ 156 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc------------------------
Confidence 777777777777753321 11112222333444444555666666554321 000
Q ss_pred HHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcc---cHHHHHHHHhcC--------CCchhHHHHHHHHH
Q 036160 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV---SWNALFSRFQDY--------ESPDQGLRIFYQML 245 (601)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~ 245 (601)
.....|+ ...+..+....+.+.+...+......+.. ....+...+... |++++|..+++++.
T Consensus 157 ---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 157 ---GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp -----CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0000111 11222233334444444444333332222 222222222221 35677777777776
Q ss_pred HCCCCCC-HhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC--CCcccH
Q 036160 246 LKGFKPN-MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN--KDLFAY 322 (601)
Q Consensus 246 ~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 322 (601)
.. .|+ ...+..+. ..+..+...+...|++++|...|+...+ |+...|
T Consensus 230 ~~--~p~~~~~~~~~~----------------------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 279 (537)
T 3fp2_A 230 SA--NTVDDPLRENAA----------------------------LALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY 279 (537)
T ss_dssp C----CCCHHHHHHHH----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HH--CCCcchhhHHHH----------------------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHH
Confidence 54 232 21111111 1223444556666677777766666543 345567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036160 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402 (601)
Q Consensus 323 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (601)
..+...+...|++++|...+++..... +.+..++..+...+...|+++.|...++.+.+... .+...+..+..++...
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 778888999999999999999998864 34677888899999999999999999999998753 3567888999999999
Q ss_pred CCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-C----CHhhHHHHHHHhhcc------
Q 036160 403 GSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-P----DEITFVVVLSACSHM------ 468 (601)
Q Consensus 403 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p----~~~~~~~l~~~~~~~------ 468 (601)
|++++|...+++.. +.+...|..+...+...|++++|.+.|+++.+.... + ....+..+...+...
T Consensus 358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 99999999998655 456778999999999999999999999998874211 1 111244555677777
Q ss_pred ----CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH
Q 036160 469 ----GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNA 523 (601)
Q Consensus 469 ----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~ 523 (601)
|++++|...++++.+. .+.+...+..++.+|.+.|++++|.+.|++ +.+.|+.
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred hhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999999999999876 234478899999999999999999999998 4455643
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.4e-21 Score=194.72 Aligned_cols=372 Identities=9% Similarity=-0.045 Sum_probs=262.8
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhc
Q 036160 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213 (601)
Q Consensus 134 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 213 (601)
..+...+...... -+.+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..++...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344445544443 24566788899999999999999999999999874 567889999999999999999999999988
Q ss_pred CC---CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCH----hhHHHHHHHhcCCCChhHHHHHHHHHHHccCCC
Q 036160 214 AH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM----CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286 (601)
Q Consensus 214 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 286 (601)
.+ .+...+..+...+...|++++|...|+++... .|+. ..+..+...+..
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH---------------------
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH---------------------
Confidence 65 34667889999999999999999999999876 4443 445444443211
Q ss_pred CcchhhHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 036160 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363 (601)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 363 (601)
..+..+...+...|++++|...|+.+.+ .+...+..+...|.+.|++++|...|+++.... +.+..++..+...
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1123445567778888888888887653 356778888889999999999999999887752 3456677777777
Q ss_pred hcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHH
Q 036160 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443 (601)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 443 (601)
+...|+++.|...++.+.+.... +...+..+... . ....+..+...+.+.|++++|...|
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV-K------------------KLNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-H------------------HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH-H------------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777777777654321 22222211100 0 0112233477788888899999999
Q ss_pred HHHHHcCCCCC-----HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-c
Q 036160 444 RMMLDEGYVPD-----EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-T 517 (601)
Q Consensus 444 ~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~ 517 (601)
+++.+. .|+ ...+..+..++.+.|++++|...++.+.+. .+.+...+..++.+|...|++++|...+++ +
T Consensus 281 ~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 281 ESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888874 455 236777788888889999999998888765 233577888888999999999999999887 4
Q ss_pred CCCC-cHHHHHHHHHH------------HHhcC-----ChhHHHHHHHH-HHhcCCCCC
Q 036160 518 KLTP-NALVWENLLGA------------CSWHG-----NIELDEKDAEK-LLELEPKME 557 (601)
Q Consensus 518 ~~~p-~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~p~~~ 557 (601)
.+.| +...+..+..+ |...| +.+++.+.+++ +++..|++.
T Consensus 357 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 5667 45666666633 33334 66788888886 788888653
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=3.4e-19 Score=171.49 Aligned_cols=306 Identities=11% Similarity=0.042 Sum_probs=182.7
Q ss_pred CHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHH
Q 036160 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITS 328 (601)
Q Consensus 252 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~ 328 (601)
|...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566677778888888888888888888764 33456777788888888888888888887653 245667777888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC---C-HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036160 329 YAQAGEAEMALKCFRKMRLEGIKS---N-EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404 (601)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~~~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 404 (601)
+...|++++|...+++.... .| + ...+..+.... ....+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccC
Confidence 88888888888888888764 34 2 22222221000 00111223445555566
Q ss_pred HHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHH
Q 036160 405 IDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 405 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 481 (601)
+++|.+.+++.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666555433 3345555566666666666666666666666531 223445555666666666666666666666
Q ss_pred HHHhCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHhHh-cCCCCc-H----HHHHHHHHHHHhcCChhHH
Q 036160 482 KKIYGITPT-IKHFA------------CMIDILGRAGKFTEIENFITE-TKLTPN-A----LVWENLLGACSWHGNIELD 542 (601)
Q Consensus 482 ~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~----~~~~~l~~~~~~~g~~~~A 542 (601)
.+. .|+ ...+. .++..+.+.|++++|...+++ +...|+ . ..+..++..+...|++++|
T Consensus 215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 544 222 22222 124445666666666666665 222332 2 2233455556666666666
Q ss_pred HHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 543 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
+..++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666666666666666666666666666666666666666665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=5.1e-19 Score=170.30 Aligned_cols=310 Identities=13% Similarity=0.059 Sum_probs=239.5
Q ss_pred cccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHH
Q 036160 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297 (601)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (601)
+..+..+...+...|++++|...|+++.... +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567788889999999999999999998863 3457888889999999999999999999999875 3355788899999
Q ss_pred HHhcCCHHHHHHHHhhCCCCCc------ccHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036160 298 YDKSGCLEDAGVAFDSLANKDL------FAYTAI------------ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359 (601)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~------~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 359 (601)
+...|++++|...|++..+.++ ..+..+ ...+...|++++|...++++.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------- 147 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL------------- 147 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-------------
Confidence 9999999999999999866444 223222 234444555555555555544
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCCh
Q 036160 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLG 436 (601)
Q Consensus 360 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 436 (601)
+.. +.+...+..+..++...|++++|...+++.. +.+...|..+...+...|++
T Consensus 148 ----------------------~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 148 ----------------------EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp ----------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred ----------------------HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 332 2244556677777778888888887776543 44677888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-hhHH------------HHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-h----hHHHHHH
Q 036160 437 EKALEAFRMMLDEGYVPDE-ITFV------------VVLSACSHMGLIEEGKKHFSSIKKIYGITPT-I----KHFACMI 498 (601)
Q Consensus 437 ~~A~~~~~~m~~~~~~p~~-~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~ 498 (601)
++|...+++..+. .|+. ..+. .+...+.+.|++++|...++.+.+. .|+ . ..+..++
T Consensus 205 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 205 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHH
Confidence 9999999998875 4443 3332 2356688999999999999999876 344 2 2355678
Q ss_pred HHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhc
Q 036160 499 DILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 570 (601)
.++...|++++|.+.+++ +...| +...+..++..+...|++++|...++++++++|+++..+..+..+....
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999999999999998 33455 7889999999999999999999999999999999888877777665543
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=2.9e-16 Score=164.45 Aligned_cols=382 Identities=11% Similarity=0.049 Sum_probs=283.6
Q ss_pred ChhhHHHHHHHHhccCCcchhhHHHHHHHHHCC--CCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHH
Q 036160 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGF--ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228 (601)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 228 (601)
++.-....+++|...|.+.++.++++...-.+- ..+...-+.++....+. +..+..++.+....-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 344456667778888888888888888873321 12335556677666666 5566666666554322 45577788
Q ss_pred hcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHH
Q 036160 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308 (601)
Q Consensus 229 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 308 (601)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++ .++.+|..+..++...|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 88899999999998752 12222233332 567788888887755 34677888999999999999999
Q ss_pred HHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCc
Q 036160 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 388 (601)
..|.+. .|...|..++..+.+.|++++|.+.|...++.. +++...+.+..+|++.++++....+. . .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 998664 677778889999999999999999998777654 33333345788888888877544332 1 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhcc
Q 036160 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468 (601)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 468 (601)
...+..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 556667888999999999999999885 48899999999999999999999876 3557888888889999
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc--CChhHHHH
Q 036160 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWH--GNIELDEK 544 (601)
Q Consensus 469 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~--g~~~~A~~ 544 (601)
|++..|...... +..++..+..++..|.+.|.+++|+++++. ++++| ....|..++.++.+. ++..++.+
T Consensus 1264 ~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 998888886442 344566777889999999999999999976 66666 566777787777655 57788888
Q ss_pred HHHHHHhcCC-----CCCcceeehhhhhhhcCChhhHHH
Q 036160 545 DAEKLLELEP-----KMESNYVFPSDISATQGRWNDFSG 578 (601)
Q Consensus 545 ~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 578 (601)
.|..-..+.| ++...|..+..+|.+-|+++.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8887777766 677788889999999999999984
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=8.7e-19 Score=166.51 Aligned_cols=287 Identities=14% Similarity=-0.037 Sum_probs=206.3
Q ss_pred CCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036160 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361 (601)
Q Consensus 285 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 361 (601)
+.+...+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 33444555566666666777777666666543 234455556667777777777777777776652 23445566666
Q ss_pred HhhcCCC-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChH
Q 036160 362 NGCSPVA-TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGE 437 (601)
Q Consensus 362 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 437 (601)
..+...| +++.|...++.+.+.. +.+...+..+..++...|++++|...+++.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6666677 7777777777766543 2345667778888888888888888887654 335566777888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCC-------CCChhHHHHHHHHHHhcCChHHH
Q 036160 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI-------TPTIKHFACMIDILGRAGKFTEI 510 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A 510 (601)
+|.+.++++.+.. +.+...+..+...+...|++++|...++++.+...- +.....+..++.++.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999998888752 334567888888888899999999988888765211 23356788888888999999999
Q ss_pred HHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhh-hhcCChh
Q 036160 511 ENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS-ATQGRWN 574 (601)
Q Consensus 511 ~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 574 (601)
...+++ +...| +...+..++..+...|++++|...+++++++.|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 998887 33344 6778888888888999999999999999999998888888888887 4556543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=8.9e-16 Score=160.90 Aligned_cols=377 Identities=11% Similarity=0.027 Sum_probs=216.5
Q ss_pred CcccHHHHHHHHhhCCChhhHHHHHHhhhhcCC--CCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhH
Q 036160 15 NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK--KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL 92 (601)
Q Consensus 15 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (601)
++.--...+++|...|.+.+|++++++..-.+- .-+....+.++.+..+. +.....++...... ....-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 444456788999999999999999999984321 12334556666666655 44555555554431 112335
Q ss_pred HHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchh
Q 036160 93 VDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD-QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171 (601)
Q Consensus 93 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 171 (601)
...+...|.+++|..+|++... +..-+..+. ..+++++|.++.++. -++.+|..+..++...|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 5666777888888888877642 111122222 566777777776643 2356677777777777777777
Q ss_pred hHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC--CCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCC
Q 036160 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249 (601)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 249 (601)
...|... .|...|..++..+.+.|++++|.+.+....+ +++...+.++.+|.+.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 7777542 4566666777777777777777777765543 33333445777777777666433221 1
Q ss_pred CCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHH
Q 036160 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329 (601)
Q Consensus 250 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~ 329 (601)
.|+...+..+...|...|+++.|..+|..+ ..|..+...|.+.|+++.|.+.+++.. +..+|..+-.+|
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC 1260 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHH
Confidence 345555666777777777777777777764 256777777777777777777776653 345555555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHH
Q 036160 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK--CGSIDD 407 (601)
Q Consensus 330 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 407 (601)
...|++..|...... +..++..+..++..|.+.|.+++|..+++...... +-....|+-|..+|.+ .++..+
T Consensus 1261 ve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 555555555443332 22233344455555555555555555554443322 2223333333333333 233334
Q ss_pred HHHHHcCCC-C-------CCHhHHHHHHHHHHhCCChHHHH
Q 036160 408 AEAVFKGSA-L-------RDTASWNMMIGGYVKHGLGEKAL 440 (601)
Q Consensus 408 A~~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~~A~ 440 (601)
+.++|.+-. - .+...|.-+.-.|.+.|+++.|.
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 444433211 1 13344555555555555555554
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=6.5e-17 Score=162.21 Aligned_cols=377 Identities=11% Similarity=0.028 Sum_probs=251.5
Q ss_pred hhHHHHHHHHHHh----cCCccHHHHHHhhcCC-CCcccHHHHHHHHhc----CCCchhHHHHHHHHHHCCCCCCHhhHH
Q 036160 187 TLVGNALVSMYME----NGRVSYGSRVFEAIAH-QDSVSWNALFSRFQD----YESPDQGLRIFYQMLLKGFKPNMCTFI 257 (601)
Q Consensus 187 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~ 257 (601)
...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3334444444444 4455555555544433 233344444444444 555555555555555543 333344
Q ss_pred HHHHHhcC----CCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHh----cCCHHHHHHHHhhCCC-CCcccHHHHHHH
Q 036160 258 VILKACSS----LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK----SGCLEDAGVAFDSLAN-KDLFAYTAIITS 328 (601)
Q Consensus 258 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~ll~~ 328 (601)
.+...+.. .++++.|...++...+.+ +...+..+...|.. .++.++|.+.|++..+ .++.++..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 455666666666655543 33444555555555 5667777777666543 355566666666
Q ss_pred HHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC----CCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036160 329 YAQ----AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP----VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400 (601)
Q Consensus 329 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (601)
|.. .+++++|...|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+..+|.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 666 678888888888777654 33444444444443 678888888888777654 3455666777777
Q ss_pred h----cCCHHHHHHHHcCCC-CCCHhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccC-
Q 036160 401 K----CGSIDDAEAVFKGSA-LRDTASWNMMIGGYVKH-----GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG- 469 (601)
Q Consensus 401 ~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 469 (601)
. .++.++|..+|++.. ..+...+..+...|... +++++|+..|++..+.| +...+..+...|...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 7 788999999988665 34667778888888887 89999999999999864 4456667777776655
Q ss_pred --cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHhHhcCCCCcHHHHHHHHHHHHh----cCCh
Q 036160 470 --LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR----AGKFTEIENFITETKLTPNALVWENLLGACSW----HGNI 539 (601)
Q Consensus 470 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 539 (601)
++++|.+.|++..+. .++..+..|...|.. .+++++|...+++..-..++..+..++..|.. .+|+
T Consensus 344 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred cccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 889999999998764 357788889999988 89999999999984323467888899999988 8999
Q ss_pred hHHHHHHHHHHhcCCC---CCcceeehhhhhhhcCChhh--HHHHHHH
Q 036160 540 ELDEKDAEKLLELEPK---MESNYVFPSDISATQGRWND--FSGVRAL 582 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~--A~~~~~~ 582 (601)
++|...++++.+..|+ ++.....++.++....+..+ |.+++++
T Consensus 420 ~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 9999999999999954 77788888887765433222 4454543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.5e-18 Score=163.30 Aligned_cols=267 Identities=10% Similarity=0.012 Sum_probs=227.9
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 036160 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396 (601)
Q Consensus 317 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 396 (601)
.++..+..+...+...|++++|..+++++.... +.+...+..+...+...|+.++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366677888889999999999999999998764 3344556667777888999999999999998865 34677888899
Q ss_pred HHHHhcC-CHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHH
Q 036160 397 AMYAKCG-SIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472 (601)
Q Consensus 397 ~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 472 (601)
..+...| ++++|...|++.. +.+...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999998654 4467789999999999999999999999999863 334567778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CC----------CCcHHHHHHHHHHHHhcCChhH
Q 036160 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KL----------TPNALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 473 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 541 (601)
+|.+.++++.+. .+.+...+..++..+...|++++|...+++. .. +.+...+..++..+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999998764 2344788999999999999999999999873 11 2356799999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 542 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
|+..++++++..|+++..+..++.+|...|++++|.+++++..+..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999997765443
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.8e-17 Score=153.03 Aligned_cols=270 Identities=9% Similarity=-0.019 Sum_probs=214.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchh
Q 036160 296 DMYDKSGCLEDAGVAFDSLANKDL----FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371 (601)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 371 (601)
+-....|++..|+..++.+...++ .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 345567888888888887765443 2334567888899999998876654 24566778888888888889999
Q ss_pred hHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 036160 372 NGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450 (601)
Q Consensus 372 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 450 (601)
.|.+.++.+...+..| +...+..+..++...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999888876544 566677788999999999999999999 568889999999999999999999999999986
Q ss_pred CCCCHhhH---HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHH
Q 036160 451 YVPDEITF---VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALV 525 (601)
Q Consensus 451 ~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~ 525 (601)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.+++ +...| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4665322 12233344569999999999999986 456688999999999999999999999998 55567 7889
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHH
Q 036160 526 WENLLGACSWHGNIEL-DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGV 579 (601)
Q Consensus 526 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 579 (601)
+..++..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 9999999999999875 67899999999998876543 44555555555443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.8e-18 Score=167.14 Aligned_cols=277 Identities=11% Similarity=-0.034 Sum_probs=211.6
Q ss_pred hcCCHHHHHH-HHhhCCCC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchh
Q 036160 300 KSGCLEDAGV-AFDSLANK-------DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371 (601)
Q Consensus 300 ~~~~~~~a~~-~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 371 (601)
..|++++|.. .|++.... +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 66654321 24557777778888888888888888887653 345667777777788888888
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHH---------------HHHHHHhC
Q 036160 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNM---------------MIGGYVKH 433 (601)
Q Consensus 372 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~---------------l~~~~~~~ 433 (601)
.|...++.+.+.. +.+..++..+..+|...|++++|.+.++++. +.+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888777765 3356677788888888888888888887543 222222221 13334488
Q ss_pred CChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 036160 434 GLGEKALEAFRMMLDEGYVPD---EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510 (601)
Q Consensus 434 ~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 510 (601)
|++++|...++++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+...+..++.++.+.|++++|
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999985 444 678899999999999999999999999876 234478899999999999999999
Q ss_pred HHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----------CcceeehhhhhhhcCChhhHH
Q 036160 511 ENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM-----------ESNYVFPSDISATQGRWNDFS 577 (601)
Q Consensus 511 ~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 577 (601)
...+++ +...| +...+..++.++.+.|++++|...+++++++.|++ +.+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999998 34455 68899999999999999999999999999999987 678999999999999999999
Q ss_pred HHHHH
Q 036160 578 GVRAL 582 (601)
Q Consensus 578 ~~~~~ 582 (601)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 98763
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.1e-16 Score=162.31 Aligned_cols=413 Identities=6% Similarity=-0.057 Sum_probs=269.2
Q ss_pred CChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC--CCcccHHHHHHH
Q 036160 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFSR 227 (601)
Q Consensus 150 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~ 227 (601)
-+...|..++.. .+.|+++.|..+++.+++.. |.+...|..++..+.+.|++++|..+|++... |++..|..++..
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 366677777774 66788888888888887763 55667788888888888888888888888766 555556555542
Q ss_pred -HhcCCCchhHHH----HHHHHHHC-CCCC-CHhhHHHHHHHhcC---------CCChhHHHHHHHHHHHccCCCCcchh
Q 036160 228 -FQDYESPDQGLR----IFYQMLLK-GFKP-NMCTFIVILKACSS---------LSDVGFGKQLHAHTIKHSLDGNHVVG 291 (601)
Q Consensus 228 -~~~~~~~~~a~~----~~~~m~~~-g~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 291 (601)
....|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+...+.........|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 234566766655 55555443 4444 33444444443322 45666677777666652111111122
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH------HcC---CCCCH--------
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR------LEG---IKSNE-------- 354 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~------~~~---~~p~~-------- 354 (601)
..........|. ..+..++. ...+++..|..+++++. +.. ++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 211111100010 00111110 02344556666555422 111 23331
Q ss_pred HHHHHHHHhhc----CCCch----hhHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 036160 355 FTLASCLNGCS----PVATL----ANGRLLHSIAVKTGHLLDMFVSTALVAMYAK-------CGSID-------DAEAVF 412 (601)
Q Consensus 355 ~~~~~ll~~~~----~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~ 412 (601)
..|...+.... ..++. ..+..+|+.+.... +.+...|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 23333332221 11222 35667788777753 4467777777777775 68877 889998
Q ss_pred cCCC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHhhccCcHHHHHHHHHHHHHHhC
Q 036160 413 KGSA----LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE--ITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486 (601)
Q Consensus 413 ~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 486 (601)
++.. +.+...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 8654 336788999999999999999999999999984 6653 47888888888899999999999988754
Q ss_pred CCCC-hhHHHHHHHH-HHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc----
Q 036160 487 ITPT-IKHFACMIDI-LGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES---- 558 (601)
Q Consensus 487 ~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 558 (601)
.|+ ...|...+.. +...|++++|..+|++ +...| ++..|..++..+.+.|+.++|..+++++++..|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 343 3334333322 3468999999999997 44456 6889999999999999999999999999998876655
Q ss_pred ceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 559 NYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 559 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
.|..++......|+.+.+..+++++.+.-+
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 666667777888999999999998876554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=3.1e-18 Score=165.18 Aligned_cols=259 Identities=11% Similarity=-0.037 Sum_probs=206.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 036160 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397 (601)
Q Consensus 318 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 397 (601)
+...|..+...+.+.|++++|...|+++.... +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34557778888888888888888888887763 3466778888888888888888888888888764 335777888888
Q ss_pred HHHhcCCHHHHHHHHcCCCC--C-C----------HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHhhHHHH
Q 036160 398 MYAKCGSIDDAEAVFKGSAL--R-D----------TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP---DEITFVVV 461 (601)
Q Consensus 398 ~~~~~~~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l 461 (601)
+|...|++++|...|++... | + ...+..+...+...|++++|++.++++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 88899999999888876542 1 1 223344578899999999999999999986 44 46789999
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCCh
Q 036160 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNI 539 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~ 539 (601)
...+...|++++|.+.++++.+. .+.+..++..++.+|.+.|++++|+..+++ +...| +..++..++.+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999876 244588999999999999999999999998 44556 688999999999999999
Q ss_pred hHHHHHHHHHHhcCCC------------CCcceeehhhhhhhcCChhhHHHHHHH
Q 036160 540 ELDEKDAEKLLELEPK------------MESNYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
++|...+++++++.|+ +...+..++.++...|+.+.|..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999887 356788899999999999999887764
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.2e-17 Score=156.80 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=96.1
Q ss_pred CchHHHHhccCCCCCcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHh
Q 036160 1 MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRL 80 (601)
Q Consensus 1 ~~~a~~~f~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 80 (601)
+++|.+.|++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++...++.
T Consensus 19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 467888888886654 7889999999999999999999653 57778999999999999999999988777763
Q ss_pred cCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036160 81 GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR 160 (601)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 160 (601)
.+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..+..
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 44577888899999999999998887753 77789999999999999999999999876 46888999
Q ss_pred HHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHH
Q 036160 161 ATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240 (601)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 240 (601)
++.+.|++++|.+.+..+ .++.+|..++.+|+..|+++.|......+. ..+.....++..|.+.|.+++|..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 999999999988888877 367888899999999999998877666654 3334455677888888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhc
Q 036160 241 FYQMLLKGFKPNMCTFIVILKACS 264 (601)
Q Consensus 241 ~~~m~~~g~~p~~~t~~~ll~~~~ 264 (601)
++...... +--...|+-+..+++
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHH
Confidence 88776443 223444444444443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=7.4e-18 Score=158.28 Aligned_cols=350 Identities=9% Similarity=-0.005 Sum_probs=158.1
Q ss_pred hcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHH
Q 036160 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278 (601)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 278 (601)
+.|++++|.++++++..| .+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456778888888877444 3777888888888888888888854 25667888888888888888888887776
Q ss_pred HHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036160 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358 (601)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 358 (601)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 34466777888888888888887777753 66678888888888888888888888866 3678
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHH
Q 036160 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438 (601)
Q Consensus 359 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 438 (601)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888888888888888888777 267888888889999999999977766655 444545568888999999999
Q ss_pred HHHHHHHHHHcCCCCC-HhhHHHHHHHhh--ccCcHHHHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCChHH
Q 036160 439 ALEAFRMMLDEGYVPD-EITFVVVLSACS--HMGLIEEGKKHFSSIKKIYGITP------TIKHFACMIDILGRAGKFTE 509 (601)
Q Consensus 439 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~ 509 (601)
|+.+++..... .+. ...|+.+..+|+ +.++..+.++.|.. +.+++| +...|.-++..|...++++.
T Consensus 226 ai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999888754 333 335555555554 44555555555542 224444 36778889999999999998
Q ss_pred HHHHhHhcC-C------------C-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhh
Q 036160 510 IENFITETK-L------------T-PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575 (601)
Q Consensus 510 A~~~~~~~~-~------------~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 575 (601)
|...+-+-. . + .+..+|...+.-|. +....+..-+..++. | ...+......+.+.|...-
T Consensus 301 A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~--~--~ld~~r~v~~~~~~~~l~l 374 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS--P--RLDHTRAVNYFSKVKQLPL 374 (449)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHG--G--GCCHHHHHHHHHHTTCTTT
T ss_pred HHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHH--h--ccCcHHHHHHHHHcCCcHH
Confidence 887665522 1 1 24445555555444 222333333333331 1 1112334455566677777
Q ss_pred HHHHHHHHHhcCC
Q 036160 576 FSGVRALLSSQGI 588 (601)
Q Consensus 576 A~~~~~~~~~~~~ 588 (601)
+..++..+...+.
T Consensus 375 ~~~yl~~v~~~n~ 387 (449)
T 1b89_A 375 VKPYLRSVQNHNN 387 (449)
T ss_dssp THHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhH
Confidence 7777766665443
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.3e-15 Score=152.73 Aligned_cols=352 Identities=14% Similarity=0.014 Sum_probs=290.0
Q ss_pred CCcccHHHHHHHHhc----CCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcC----CCChhHHHHHHHHHHHccCCCC
Q 036160 216 QDSVSWNALFSRFQD----YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS----LSDVGFGKQLHAHTIKHSLDGN 287 (601)
Q Consensus 216 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 287 (601)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++++.|...++...+.+ +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 456667777777777 899999999999998875 55667777777777 899999999999998865 5
Q ss_pred cchhhHHHHHHHh----cCCHHHHHHHHhhCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036160 288 HVVGTSLVDMYDK----SGCLEDAGVAFDSLANK-DLFAYTAIITSYAQ----AGEAEMALKCFRKMRLEGIKSNEFTLA 358 (601)
Q Consensus 288 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 358 (601)
...+..|...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666778888888 88999999999987654 56677788888887 789999999999998875 456666
Q ss_pred HHHHhhcC----CCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHcCCC-CCCHhHHHHHHHH
Q 036160 359 SCLNGCSP----VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK----CGSIDDAEAVFKGSA-LRDTASWNMMIGG 429 (601)
Q Consensus 359 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~ 429 (601)
.+...+.. .++.++|...+....+.+ +...+..+...|.. .+++++|..+|++.. ..+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666655 899999999999998876 55677778888886 789999999998755 4466777788888
Q ss_pred HHh----CCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhcc-----CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036160 430 YVK----HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-----GLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500 (601)
Q Consensus 430 ~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 500 (601)
|.. .+++++|++.|++..+.| +...+..+...|... +++++|...+++..+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998764 455667777777776 8999999999998765 3 45677888888
Q ss_pred HHhcC---ChHHHHHHhHhcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCcceeehhhhhhh----
Q 036160 501 LGRAG---KFTEIENFITETKLTPNALVWENLLGACSW----HGNIELDEKDAEKLLELEPKMESNYVFPSDISAT---- 569 (601)
Q Consensus 501 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 569 (601)
|...| ++++|.+++++.....++..+..++..|.. .+++++|...++++.+.. ++.++..++.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 789999999984324678899999999998 899999999999999864 57899999999998
Q ss_pred cCChhhHHHHHHHHHhcCC
Q 036160 570 QGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 570 ~g~~~~A~~~~~~~~~~~~ 588 (601)
.++.++|..+|++..+.++
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988774
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.4e-15 Score=154.13 Aligned_cols=406 Identities=10% Similarity=0.047 Sum_probs=280.8
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHH
Q 036160 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195 (601)
Q Consensus 116 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 195 (601)
+...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|+.++... |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5678888888 47899999999999999875 34566788999999999999999999999998874 57777777765
Q ss_pred HH-HhcCCccHHHH----HHhhcCC------CCcccHHHHHHHHhc---------CCCchhHHHHHHHHHHCCCCCCH--
Q 036160 196 MY-MENGRVSYGSR----VFEAIAH------QDSVSWNALFSRFQD---------YESPDQGLRIFYQMLLKGFKPNM-- 253 (601)
Q Consensus 196 ~~-~~~~~~~~a~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~-- 253 (601)
.. ...|+.+.|.+ +|+.... .+...|...+....+ .|+++.|..+|++.... |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 33 45678877765 6665422 244567777766554 68899999999998873 332
Q ss_pred -hhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhh-------CC------CCC-
Q 036160 254 -CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS-------LA------NKD- 318 (601)
Q Consensus 254 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~- 318 (601)
..|..........+. ..+..++. .+.+++..|..++.. +. .|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 233222211000000 00111110 012334444443332 11 111
Q ss_pred -------cccHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-------CCchh-----
Q 036160 319 -------LFAYTAIITSYAQA----GEA----EMALKCFRKMRLEGIKSNEFTLASCLNGCSP-------VATLA----- 371 (601)
Q Consensus 319 -------~~~~~~ll~~~~~~----g~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~----- 371 (601)
...|...+...... ++. .++..+|++.... .+-+...|......+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 12344443322221 232 3777888888775 23356666666666553 68876
Q ss_pred --hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC--CC-CH-hHHHHHHHHHHhCCChHHHHHHHHH
Q 036160 372 --NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA--LR-DT-ASWNMMIGGYVKHGLGEKALEAFRM 445 (601)
Q Consensus 372 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (601)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|++.. .| +. ..|..++..+.+.|++++|.++|++
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888888763334468888899999999999999999998755 33 43 5899999999999999999999999
Q ss_pred HHHcCCCCC-HhhHHHHHHH-hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CC---
Q 036160 446 MLDEGYVPD-EITFVVVLSA-CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KL--- 519 (601)
Q Consensus 446 m~~~~~~p~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 519 (601)
..+. .|+ ...|...... +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++. ..
T Consensus 382 Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 382 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 9985 343 3333332222 346899999999999998762 334788999999999999999999999983 22
Q ss_pred CCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 520 TPN--ALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 520 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
.|+ ...|...+......|+.+.+..+..++.+..|+
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 332 448888888888999999999999999999985
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.4e-17 Score=153.71 Aligned_cols=249 Identities=8% Similarity=0.024 Sum_probs=202.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036160 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNE--FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403 (601)
Q Consensus 326 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (601)
++-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999998887643 34443 3445677889999999999876543 24567788888999999999
Q ss_pred CHHHHHHHHcCCC-----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHH
Q 036160 404 SIDDAEAVFKGSA-----LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478 (601)
Q Consensus 404 ~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 478 (601)
+.++|.+.++++. +.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998653 33667788888999999999999999987 456678889999999999999999999
Q ss_pred HHHHHHhCCCCChhHH---HHHHHHHHhcCChHHHHHHhHhcC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 479 SSIKKIYGITPTIKHF---ACMIDILGRAGKFTEIENFITETK--LTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 479 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
+++.+. .|+.... ..++..+...|++++|..+|+++. .++++..++.++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999876 4663211 223345556689999999999843 34488899999999999999999999999999999
Q ss_pred CCCCcceeehhhhhhhcCChhh-HHHHHHHHHhcCCc
Q 036160 554 PKMESNYVFPSDISATQGRWND-FSGVRALLSSQGIK 589 (601)
Q Consensus 554 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 589 (601)
|+++.++..++.++...|+.++ +.++++++.+..|.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999987 57899998876653
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=2.8e-17 Score=155.81 Aligned_cols=258 Identities=10% Similarity=-0.051 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036160 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401 (601)
Q Consensus 322 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (601)
+..+...+...|++++|..+|+++.... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 2234444445555555555555555555555442 2234455556666666
Q ss_pred cCCHHHHHHHHcCCC---CCCHhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 036160 402 CGSIDDAEAVFKGSA---LRDTASWNMM--------------IG-GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463 (601)
Q Consensus 402 ~~~~~~A~~~~~~~~---~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 463 (601)
.|++++|.+.+++.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 666666666665433 1122222222 22 3677889999999999999863 345678889999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhH
Q 036160 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 464 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 541 (601)
.+...|++++|.+.++++.+. .+.+...+..++..+...|++++|...+++ +...| +...+..++..+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999876 234478899999999999999999999998 34445 68899999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 542 DEKDAEKLLELEPK------------MESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 542 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
|.+.++++++..|+ ++..+..++.++...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999998 67888999999999999999999987543
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.9e-16 Score=156.22 Aligned_cols=366 Identities=10% Similarity=-0.065 Sum_probs=219.3
Q ss_pred cccHHHHHHHHhcCCCchhHHHHHHHHHHC-----C--CCC-CHhhHHHHHHHhcCCCChhHHHHHHHHHHHccC-----
Q 036160 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLK-----G--FKP-NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL----- 284 (601)
Q Consensus 218 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----- 284 (601)
...||.+...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...++...+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 446899999999999999999999876542 1 122 356788888899999999999999888765321
Q ss_pred -C-CCcchhhHHHHHHHhc--CCHHHHHHHHhhCCC--C-CcccHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCH
Q 036160 285 -D-GNHVVGTSLVDMYDKS--GCLEDAGVAFDSLAN--K-DLFAYTAIITS---YAQAGEAEMALKCFRKMRLEGIKSNE 354 (601)
Q Consensus 285 -~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--~-~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~~~~p~~ 354 (601)
. ....++..+..++... +++++|...|++..+ | ++..+..+... +...++.++|++.+++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 1 1223444444444443 467888888887653 2 34444444333 345677788888888777653 2233
Q ss_pred HHHHHHHHh----hcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHH
Q 036160 355 FTLASCLNG----CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMI 427 (601)
Q Consensus 355 ~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~ 427 (601)
..+..+... ....++.+.|.+.++...... +.+..++..+...|...|++++|...+++.. +.+..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 344333322 334567777888887777654 3355667778888888888888888887654 34566676666
Q ss_pred HHHHhC-------------------CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 036160 428 GGYVKH-------------------GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488 (601)
Q Consensus 428 ~~~~~~-------------------~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 488 (601)
.+|... +.+++|...+++..+.. +.+..++..+...+...|++++|.+.|++..+. .
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~ 364 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---E 364 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---C
Confidence 666432 22456677777766642 223346777777788888888888888777654 3
Q ss_pred CChh----HHHHHHHH-HHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceee
Q 036160 489 PTIK----HFACMIDI-LGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562 (601)
Q Consensus 489 p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 562 (601)
|+.. .+..+... +...|++++|+..+++ +.+.|+..... +....+.+++++.++.+|+++.++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3321 22233322 3456778888887776 44566543222 22334566777778889999999999
Q ss_pred hhhhhhhcCChhhHHHHHHHHHhcCCcCCCceeEEE
Q 036160 563 PSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598 (601)
Q Consensus 563 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 598 (601)
+|.+|...|++++|++.|++..+.++......+|+.
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999998887777777763
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.2e-17 Score=159.18 Aligned_cols=233 Identities=12% Similarity=-0.004 Sum_probs=195.8
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHH
Q 036160 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGY 430 (601)
Q Consensus 354 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 430 (601)
...+..+...+.+.|++++|..+++.+.+.. +.+..++..+..+|.+.|++++|...|++.. +.+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3447777888889999999999999999875 3468889999999999999999999998765 45788999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHh-h----------HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 431 VKHGLGEKALEAFRMMLDEGYVPDEI-T----------FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~~~-~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
...|++++|+..++++.+. .|+.. . +..+...+...|++++|.+.++++.+.....++..++..++.
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999984 44432 2 233477889999999999999999887222225789999999
Q ss_pred HHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHH
Q 036160 500 ILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 577 (601)
.|.+.|++++|++.+++ +...| +..+|..++.+|...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998 34455 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCc
Q 036160 578 GVRALLSSQGIK 589 (601)
Q Consensus 578 ~~~~~~~~~~~~ 589 (601)
.++++..+..+.
T Consensus 302 ~~~~~al~~~~~ 313 (365)
T 4eqf_A 302 SNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhCcc
Confidence 999999865543
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=8.9e-17 Score=155.17 Aligned_cols=301 Identities=12% Similarity=-0.015 Sum_probs=177.3
Q ss_pred HHhcCCCchhHHH-HHHHHHHCCC-CC--CHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcC
Q 036160 227 RFQDYESPDQGLR-IFYQMLLKGF-KP--NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302 (601)
Q Consensus 227 ~~~~~~~~~~a~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 302 (601)
++...|++++|.. .+++...... .| +...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444556666665 5554332210 01 23344455555555555555555555555442 223334444455555555
Q ss_pred CHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHH
Q 036160 303 CLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379 (601)
Q Consensus 303 ~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 379 (601)
++++|...|+++.+ .+..++..+...+...|++++|...++++.... |+...... ..+...
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~------~~~~~~-------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVT------PAEEGA-------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHH------HHHHHh--------
Confidence 55555555544322 233444444445555555555555555544432 11110000 000000
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 036160 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LR--DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454 (601)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 454 (601)
+.......+..+...+ ..|++++|...|+++. +. +..++..+...+...|++++|+..++++.+.. +.+
T Consensus 177 ----~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 177 ----GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0000000011233333 7888899988887654 22 57788999999999999999999999998852 334
Q ss_pred HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-c----------
Q 036160 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP-N---------- 522 (601)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~---------- 522 (601)
...+..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...+++. ...| +
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 668899999999999999999999999876 2344778999999999999999999999873 2223 2
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 523 -ALVWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 523 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
..+|..++.++...|++++|..++++.++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 688999999999999999999998876653
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=5.2e-15 Score=148.00 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=71.8
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh--hHHHHHH-HhhccCcHHHHHHHHHHHHHHhCCCCChhHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI--TFVVVLS-ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 495 (601)
+...+..+...+...|++++|+..|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+.....
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~ 409 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKE 409 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHH
Confidence 44567777788888889999999998888753222221 2222222 23467889999999988775 456543322
Q ss_pred HHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehh
Q 036160 496 CMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564 (601)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 564 (601)
.. ...+..++++ +...| +..+|..++.++...|++++|++.+++++++.|.+|.+...+|
T Consensus 410 ~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 KM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 22 2233344443 23345 7889999999999999999999999999999999888776655
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=3.3e-16 Score=138.04 Aligned_cols=194 Identities=16% Similarity=0.124 Sum_probs=158.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHH
Q 036160 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVV 461 (601)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 461 (601)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..+++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566777888889999999999999998654 557888999999999999999999999999985 555 4688888
Q ss_pred HHHhhcc-----------CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHH
Q 036160 462 LSACSHM-----------GLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWEN 528 (601)
Q Consensus 462 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ 528 (601)
..++... |++++|+..+++..+. .|+ ...+..+..+|...|++++|+..+++ +.+..++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8999999 9999999999999876 455 77899999999999999999999998 222278889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
++.++...|++++|+..++++++.+|+++..+..++.++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998654
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=5.3e-16 Score=146.97 Aligned_cols=274 Identities=11% Similarity=-0.003 Sum_probs=166.5
Q ss_pred hhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHH
Q 036160 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYA 330 (601)
Q Consensus 254 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~ 330 (601)
..+......+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 334445555556666666666666655543 22334444555555555555555555554432 13344444555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHH-HH-HHHhcCCHHH
Q 036160 331 QAGEAEMALKCFRKMRLEGIKSNEF-TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL-VA-MYAKCGSIDD 407 (601)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 407 (601)
..|++++|...++++.... |+.. .+..+... .|+......+ .. .+...|++++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 5555555555555554432 1111 11111000 0000000011 11 2555666777
Q ss_pred HHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 408 AEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 408 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
|...+++.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777666543 3466778888888888888888888888888752 334567888888888889999999988888765
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-------------cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 485 YGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP-------------NALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 485 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
.+.+...+..++.++.+.|++++|.+.+++. ...| +...+..++.++...|++++|..++++++
T Consensus 236 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 --NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2334677888888888899999998888872 2333 36788888888899999999998888877
Q ss_pred hcCCC
Q 036160 551 ELEPK 555 (601)
Q Consensus 551 ~~~p~ 555 (601)
+..|+
T Consensus 314 ~~~~~ 318 (327)
T 3cv0_A 314 EPFAK 318 (327)
T ss_dssp HHHHH
T ss_pred Hhcch
Confidence 76554
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=2.8e-17 Score=166.75 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=119.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHcCC-------CCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhH
Q 036160 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGS-------ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458 (601)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 458 (601)
.....+|++||++|++.|++++|.++|++| ..||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334567889999999999999999988543 3789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCc-HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCC----CcHHHHHHHHHHH
Q 036160 459 VVVLSACSHMGL-IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT----PNALVWENLLGAC 533 (601)
Q Consensus 459 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~l~~~~ 533 (601)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++.+.++..++.-+ |...+-..|.+.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 999999999998 47899999999998 99999999999988777665555444443333311 1123334455555
Q ss_pred HhcC
Q 036160 534 SWHG 537 (601)
Q Consensus 534 ~~~g 537 (601)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.4e-16 Score=139.73 Aligned_cols=224 Identities=14% Similarity=0.077 Sum_probs=159.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036160 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400 (601)
Q Consensus 321 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (601)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...+..+.+.....
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------- 71 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------- 71 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-------------
Confidence 45556666666777777777776666654 444455444444555555555554444443321100
Q ss_pred hcCCHHHHHHHHcCCCCCC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHH
Q 036160 401 KCGSIDDAEAVFKGSALRD----TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476 (601)
Q Consensus 401 ~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 476 (601)
.++ ...|..+...+...|++++|...|+++.+. .|+. ..+...|++++|..
T Consensus 72 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 72 ----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp ----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 011 456777788888888888888888888874 4553 34566788888888
Q ss_pred HHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 477 HFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 477 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
.++.+... .|+ ...+..++..+...|++++|...+++ +...| +...+..++..+...|++++|+..++++++..
T Consensus 127 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 127 KAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88887653 343 66788888888888999999988887 33344 67788888888888999999999999999999
Q ss_pred CCCCcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 554 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
|+++..+..++.++...|++++|...+++..+..
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9888888889999999999999999888887644
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=2.4e-17 Score=167.27 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=110.3
Q ss_pred hhHHhhHHHHhhcCCChhHHHHHHhcCC-------CCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 036160 86 KFLSCSLVDMYSKCGLADNALKVFYRIK-------DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSL 158 (601)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 158 (601)
..+||++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4689999999999999999999997753 499999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCc-chhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHH
Q 036160 159 VRATTETGDQ-RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209 (601)
Q Consensus 159 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (601)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999985 78999999999999999999999998777665444333333
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.7e-15 Score=136.63 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=170.9
Q ss_pred chhhHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 036160 289 VVGTSLVDMYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI--KSN----EFTLASC 360 (601)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~l 360 (601)
..+..+...+...|++++|...|++..+ .+...|..+...+...|++++|...+++...... .|+ ...+..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4677888999999999999999987543 6677889999999999999999999999876431 112 2344444
Q ss_pred HHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHH
Q 036160 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440 (601)
Q Consensus 361 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 440 (601)
...+...|++++|...++.+.+.. |+ ...+.+.|++++|.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHHHH
Confidence 444444444444444444443322 22 12355567788888
Q ss_pred HHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cC
Q 036160 441 EAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TK 518 (601)
Q Consensus 441 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~ 518 (601)
..++++... .|+. ..+..+...+...|++++|...++++.+. .+.+...+..++.++.+.|++++|...+++ +.
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888874 4443 46777888888899999999999988876 234577888888999999999999999887 33
Q ss_pred CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCcceeehhh
Q 036160 519 LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELE------PKMESNYVFPSD 565 (601)
Q Consensus 519 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 565 (601)
..| +...+..++..+...|++++|...+++++++. |++...+..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 445 57888889999999999999999999999988 766555444443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1e-14 Score=134.28 Aligned_cols=240 Identities=8% Similarity=-0.132 Sum_probs=181.3
Q ss_pred cCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036160 332 AGEAEMALKCFRKMRLEGIK---SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408 (601)
Q Consensus 332 ~g~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 408 (601)
.|++++|+..++++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45667777777777665321 134456666666777777777777777777654 23567778888888888999999
Q ss_pred HHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHh
Q 036160 409 EAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485 (601)
Q Consensus 409 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 485 (601)
...|++.. +.+...|..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 88887655 446788999999999999999999999999985 566655555555667789999999999888776
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 486 GITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPN-----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 486 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
.+++...+ .++..+...++.++|.+.+++ +...|+ ...+..++..+...|++++|...++++++..|++..
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 34444444 477778888899999999988 443442 578889999999999999999999999999997643
Q ss_pred eeehhhhhhhcCChhhHHHHH
Q 036160 560 YVFPSDISATQGRWNDFSGVR 580 (601)
Q Consensus 560 ~~~l~~~~~~~g~~~~A~~~~ 580 (601)
..+.++...|++++|++.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 4477888999999998876
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.4e-14 Score=131.44 Aligned_cols=198 Identities=8% Similarity=-0.027 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHh
Q 036160 389 MFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465 (601)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 465 (601)
...+..+...+...|++++|...|++.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3445556666666777777776666543 3356667777777777788888888887777652 33455677777777
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHH
Q 036160 466 SHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELD 542 (601)
Q Consensus 466 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A 542 (601)
...|++++|.+.++++.+. +..|+ ...+..++.++...|++++|.+.+++ +...| +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7778888888877777651 23443 55677777777788888888877776 33334 566777777777888888888
Q ss_pred HHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 543 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 8888888887777777777777778888888888888887776554
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.8e-14 Score=132.41 Aligned_cols=243 Identities=9% Similarity=-0.013 Sum_probs=151.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCC
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 368 (601)
......+...|++++|...|++..+ .+...+..+...|...|++++|+..+++.......|+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------- 71 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK--------------- 71 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT---------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh---------------
Confidence 3445555566666666666655432 2334555555566666666666666665554221111
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 036160 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRM 445 (601)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (601)
.....+..+...+...|++++|...|++.. +.+...|..+...+...|++++|++.+++
T Consensus 72 ------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 72 ------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred ------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 012234556666666666666666665443 33556777777777788888888888877
Q ss_pred HHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHHhHhc-C--
Q 036160 446 MLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK---FTEIENFITET-K-- 518 (601)
Q Consensus 446 m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-- 518 (601)
..+. .|+ ...+..+...+...+++++|.+.++++.+. .+.+...+..++.++...|+ +++|...+++. .
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 7764 443 345555552334445888888888888765 22336667777777777777 77777777662 1
Q ss_pred -CCCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC
Q 036160 519 -LTPN------ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571 (601)
Q Consensus 519 -~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 571 (601)
..|+ ..++..++..|...|++++|.+.++++++++|+++.++..+..+....+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1233 2577778888999999999999999999999999888877777665544
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=7.7e-15 Score=132.32 Aligned_cols=194 Identities=9% Similarity=0.020 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc
Q 036160 391 VSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467 (601)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 467 (601)
.+..+...+...|++++|...|++.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 33444444555555555555544332 2344555555555666666666666666655531 2234455555555666
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHH
Q 036160 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKD 545 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 545 (601)
.|++++|.+.++++.+. .+.+...+..++..+.+.|++++|...+++ +...| +...+..++..+...|++++|+..
T Consensus 104 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665554 123345555556666666666666666655 22223 455555566666666666666666
Q ss_pred HHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 546 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
++++++..|+++..+..++.+|...|++++|..+++++.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 666666666655566666666666666666666666555433
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=3.2e-14 Score=126.49 Aligned_cols=199 Identities=14% Similarity=0.040 Sum_probs=151.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 464 (601)
+...+..+...+...|++++|.+.|++.. +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34556667777777778888777776543 3456677788888888888888888888887752 3355677778888
Q ss_pred hhcc-CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChh
Q 036160 465 CSHM-GLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIE 540 (601)
Q Consensus 465 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~ 540 (601)
+... |++++|...++.+.+. +..|+ ...+..++.++...|++++|...+++ +...| +...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 8888888888888762 33444 56777788888888888888888887 33344 5777888888888888888
Q ss_pred HHHHHHHHHHhcCC-CCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 541 LDEKDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 541 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+..+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 88888888888888 7878887777888888888888888888776544
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=2.5e-14 Score=122.63 Aligned_cols=166 Identities=11% Similarity=0.040 Sum_probs=133.5
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 497 (601)
+...|..+...+.+.|++++|++.|++..+. .|+ ...+..+..+|.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888888888888888888888888875 454 457788888888888888888888888765 23346677777
Q ss_pred HHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhh
Q 036160 498 IDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 575 (601)
...+...++++.|...+.+ ....| +...+..++..+.+.|++++|++.++++++.+|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888887 33445 677888888888888999999999999999899888888888999999999999
Q ss_pred HHHHHHHHHhcCC
Q 036160 576 FSGVRALLSSQGI 588 (601)
Q Consensus 576 A~~~~~~~~~~~~ 588 (601)
|++.|++..+..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9998888876544
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=1.1e-13 Score=136.53 Aligned_cols=371 Identities=11% Similarity=0.012 Sum_probs=176.8
Q ss_pred HHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCc---cHHHHHHhhcCCCCcccHHHHHHHHhcCC-----
Q 036160 161 ATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV---SYGSRVFEAIAHQDSVSWNALFSRFQDYE----- 232 (601)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~----- 232 (601)
.+.+.|++++|.++++...+.| +...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344455555555555555544 222233344444445555 66666666665555555555555444443
Q ss_pred CchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChh---HHHHHHHHHHHccCCCCcchhhHHHHHHHhcC----CHH
Q 036160 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG----CLE 305 (601)
Q Consensus 233 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 305 (601)
++++|+..|++....|... .+..+...+...+..+ .+...+......| +......+...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 5667777777777765322 3444444444333322 2333333333333 2344555666666666 344
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC----CchhhHHHHHH
Q 036160 306 DAGVAFDSLANKDLFAYTAIITSYAQAG---EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV----ATLANGRLLHS 378 (601)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~ 378 (601)
.+..+++.....++..+..+...|...| +.++|+..|++..+.|.. +...+..+-..+... ++.++|...|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4555566666666667777777777777 777888888877776532 222222222222221 34444444444
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHH-H--HhCCChHHHHHHHHHHHHcCCCCCH
Q 036160 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG-Y--VKHGLGEKALEAFRMMLDEGYVPDE 455 (601)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~ 455 (601)
... +.++..+..|... + ...+++++|++.|++..+.| +.
T Consensus 242 ~aa-----------------------------------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 242 KIA-----------------------------------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp HHG-----------------------------------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred HHc-----------------------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 443 2233344444443 2 23556666666666666544 34
Q ss_pred hhHHHHHHHhhccC-----cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHhHhcCCCCcHHHH
Q 036160 456 ITFVVVLSACSHMG-----LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR----AGKFTEIENFITETKLTPNALVW 526 (601)
Q Consensus 456 ~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~ 526 (601)
..+..|...|. .| ++++|.+.|++.. .-++..+..|...|.. ..++++|..+|++..-.-++...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 44444544444 33 6666666665543 2234555555555554 22666666666663212344455
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 527 ENLLGACSW----HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 527 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
..++..|.. ..|.++|...++++.+..+................++..+|..+.++..+
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 555555543 34666666666666665542222222222222234455566666555543
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=2e-14 Score=129.62 Aligned_cols=214 Identities=13% Similarity=0.086 Sum_probs=150.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036160 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398 (601)
Q Consensus 319 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (601)
...|..+...+...|++++|...|+++.... | .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~----------------------------------~~~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--K----------------------------------EDAIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHHH
Confidence 3445555666666666666666666665531 1 234444555666
Q ss_pred HHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHH
Q 036160 399 YAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 475 (601)
+...|++++|...+++.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 666666666666665443 3466778888899999999999999999998863 445678888899999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 476 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
..++++.+. .+.+...+..++..+.+.|++++|...+++ +...| +..++..++..+...|++++|...++++++..
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999876 234577888999999999999999999998 33344 67889999999999999999999999999999
Q ss_pred CCCCcceeehhhhhhhcC
Q 036160 554 PKMESNYVFPSDISATQG 571 (601)
Q Consensus 554 p~~~~~~~~l~~~~~~~g 571 (601)
|+++..+..++.+....|
T Consensus 224 p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCHHHHHHHTC------
T ss_pred cchHHHHHHHHHHHhhcc
Confidence 999888887776665544
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=2.5e-13 Score=124.68 Aligned_cols=228 Identities=9% Similarity=-0.105 Sum_probs=114.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC----CCchhhHHHHHHHHHHhCCCCchhHHH
Q 036160 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP----VATLANGRLLHSIAVKTGHLLDMFVST 393 (601)
Q Consensus 318 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 393 (601)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777888888888888877762 233444444444555 566666666666555543 344444
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc----cC
Q 036160 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH----MG 469 (601)
Q Consensus 394 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~ 469 (601)
.+...|... ....+++++|++.|++..+.+ +...+..+...|.. .+
T Consensus 79 ~lg~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 79 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 444444440 000444555555554444432 33344444444444 44
Q ss_pred cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHhHhcCCCCcHHHHHHHHHHHHh----cCChhH
Q 036160 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR----AGKFTEIENFITETKLTPNALVWENLLGACSW----HGNIEL 541 (601)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 541 (601)
++++|.+.+++..+. + +...+..+...|.. .+++++|...+++..-..++..+..++..+.. .+++++
T Consensus 129 ~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 129 DFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred CHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHH
Confidence 555555555544432 1 23334444444444 44555555555442111233444444444444 455555
Q ss_pred HHHHHHHHHhcCCCCCcceeehhhhhhh----cCChhhHHHHHHHHHhcC
Q 036160 542 DEKDAEKLLELEPKMESNYVFPSDISAT----QGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 542 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 587 (601)
|+..++++.+..| +..+..++.+|.. .|++++|..++++..+.|
T Consensus 205 A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 205 ALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555555555433 3444445555554 555555555555444443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=4.5e-14 Score=134.58 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=154.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036160 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399 (601)
Q Consensus 320 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (601)
..|..+...+...|++++|+..+++.... .|+ +...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~----------------------------------~~~a~~~~g~~l 141 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc----------------------------------CHHHHHHHHHHH
Confidence 45666777777788888888888877764 232 333444555555
Q ss_pred HhcCC-HHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcHHHH
Q 036160 400 AKCGS-IDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEG 474 (601)
Q Consensus 400 ~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 474 (601)
...|+ +++|+..|++.. +.+...|..+..++...|++++|+..|+++++. .| +...|..+..++...|++++|
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHH
Confidence 55664 666666665443 345667777777777778888888888877774 44 345777777777778888888
Q ss_pred HHHHHHHHHHhCCCC-ChhHHHHHHHHHHh-cCChHHH-----HHHhHh-cCCCC-cHHHHHHHHHHHHhcC--ChhHHH
Q 036160 475 KKHFSSIKKIYGITP-TIKHFACMIDILGR-AGKFTEI-----ENFITE-TKLTP-NALVWENLLGACSWHG--NIELDE 543 (601)
Q Consensus 475 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~-~~~~p-~~~~~~~l~~~~~~~g--~~~~A~ 543 (601)
+..++++++. .| +...|..+..++.+ .|..++| ++.+++ +.+.| +...|..+..++...| ++++|+
T Consensus 220 l~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 220 LQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 8888877765 34 36677777777777 5554666 366665 44556 5667777777777766 577788
Q ss_pred HHHHHHHhcCCCCCcceeehhhhhhhcC---------ChhhHHHHHHHH-HhcC
Q 036160 544 KDAEKLLELEPKMESNYVFPSDISATQG---------RWNDFSGVRALL-SSQG 587 (601)
Q Consensus 544 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~ 587 (601)
+.++++ +.+|+++.++..++.+|...| ..++|+++++++ .+..
T Consensus 297 ~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 297 NQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 877777 777777777778888877764 247788888777 4433
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=4.2e-13 Score=121.59 Aligned_cols=204 Identities=15% Similarity=0.051 Sum_probs=155.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036160 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398 (601)
Q Consensus 319 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (601)
...|..+...+...|++++|...|+++.... | .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 3456666666777777777777777766542 1 133444555566
Q ss_pred HHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHH
Q 036160 399 YAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEG 474 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a 474 (601)
|...|++++|.+.+++.. +.+...+..+...+...|++++|.++++++.+.+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666665433 346677888888899999999999999998874345644 5778888899999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 475 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
.+.++++.+. .+.+...+..++..+...|++++|...+++ +...| +...+..+...+...|++++|.+.++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999876 233477888999999999999999999998 44445 6778888889999999999999999999999
Q ss_pred CCCCCcce
Q 036160 553 EPKMESNY 560 (601)
Q Consensus 553 ~p~~~~~~ 560 (601)
.|+++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99876543
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=1.5e-12 Score=128.23 Aligned_cols=345 Identities=14% Similarity=0.063 Sum_probs=174.0
Q ss_pred HHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCCh---hHHHHHHhcCCCCCccchHHHHHHHHhcC--
Q 036160 57 VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA---DNALKVFYRIKDPDVVAWGAIITCLDQQG-- 131 (601)
Q Consensus 57 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 131 (601)
+...+.+.|++++|.+.|+...+.| +...+..|...|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4555667778888888888877765 334455566666667777 78888888877666666666666555554
Q ss_pred ---ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhH---HHHHHHHHCCCCchhHHHHHHHHHHhcCCcc-
Q 036160 132 ---CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES---IHAVICKYGFESDTLVGNALVSMYMENGRVS- 204 (601)
Q Consensus 132 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 204 (601)
++++|...|++..+.|. ...+..|...+...+..+.+.. .+......| +......|...|...+.++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67889999998888653 2356666666666555444443 444444444 3456666777777777443
Q ss_pred ---HHHHHHhhcCCCCcccHHHHHHHHhcCC---CchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHH
Q 036160 205 ---YGSRVFEAIAHQDSVSWNALFSRFQDYE---SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278 (601)
Q Consensus 205 ---~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 278 (601)
.+..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+..+...|....
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~----------- 227 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT----------- 227 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG-----------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-----------
Confidence 4444555555566667777777777777 7777777777777665 233333233333332220
Q ss_pred HHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHH
Q 036160 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS-Y--AQAGEAEMALKCFRKMRLEGIKSNEF 355 (601)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~ 355 (601)
...++.++|...|+.....++..+..+... + ...+++++|+..|++..+.|
T Consensus 228 --------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------ 281 (452)
T 3e4b_A 228 --------------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------ 281 (452)
T ss_dssp --------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------
T ss_pred --------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------
Confidence 000233333333333331122333333333 2 23455555555555555443
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-----CHHHHHHHHcCCCCCCHhHHHHHHHHH
Q 036160 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG-----SIDDAEAVFKGSALRDTASWNMMIGGY 430 (601)
Q Consensus 356 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~l~~~~ 430 (601)
+...+..|..+|. .| ++++|..+|++....++..+..|...|
T Consensus 282 --------------------------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 282 --------------------------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIY 328 (452)
T ss_dssp --------------------------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred --------------------------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2222333334443 23 566666666655533455555555555
Q ss_pred Hh----CCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc----cCcHHHHHHHHHHHHHH
Q 036160 431 VK----HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH----MGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 431 ~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 484 (601)
.. ..++++|...|++..+.|. ......|...|.. ..++++|...|+...+.
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 44 2366677777776666542 2233334333432 34666677666666543
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=2.3e-13 Score=129.68 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=188.2
Q ss_pred cchhhHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 036160 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGE-AEMALKCFRKMRLEGIKSNEFTLASCLNG 363 (601)
Q Consensus 288 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 363 (601)
...+..+...+...|++++|+..|+++.+ .+...|+.+...+...|+ +++|+..|++..... |+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~---------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PK---------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TT----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CC----------
Confidence 34677788889999999999999998764 356778889999999997 999999999988753 32
Q ss_pred hcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHH
Q 036160 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKAL 440 (601)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 440 (601)
+...|..+..++...|++++|...|++.. +.+...|..+..++.+.|++++|+
T Consensus 165 ------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 165 ------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 33444555556666666777766666544 457778888888999999999999
Q ss_pred HHHHHHHHcCCCC-CHhhHHHHHHHhhc-cCcHHHH-----HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC--ChHHH
Q 036160 441 EAFRMMLDEGYVP-DEITFVVVLSACSH-MGLIEEG-----KKHFSSIKKIYGITPT-IKHFACMIDILGRAG--KFTEI 510 (601)
Q Consensus 441 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A 510 (601)
..++++++. .| +...|+.+..++.. .|..++| ++.+++..+. .|+ ...|..+..++...| ++++|
T Consensus 221 ~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 221 QYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHH
Confidence 999999985 45 45688888888888 5655777 4778888765 455 778888888898888 68999
Q ss_pred HHHhHhcCCCC-cHHHHHHHHHHHHhcC--------C-hhHHHHHHHHH-HhcCCCCCcceeehhhhhhh
Q 036160 511 ENFITETKLTP-NALVWENLLGACSWHG--------N-IELDEKDAEKL-LELEPKMESNYVFPSDISAT 569 (601)
Q Consensus 511 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 569 (601)
++.+.++...| +...+..++..|.+.| + +++|+++++++ .+++|.....|..++..+..
T Consensus 296 ~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 296 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 99988875555 5678888888888764 2 58999999999 89999888888877766554
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=1e-13 Score=122.01 Aligned_cols=192 Identities=15% Similarity=0.075 Sum_probs=121.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 036160 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397 (601)
Q Consensus 318 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 397 (601)
++..+..+...+.+.|++++|...|++..+.. +.+...+ ..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~-----------------------------------~~lg~ 47 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEAL-----------------------------------YWLAR 47 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHH-----------------------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH-----------------------------------HHHHH
Confidence 44556666677777777777777777776542 1233344 44444
Q ss_pred HHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCCCC-HhhHHHHH
Q 036160 398 MYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKH-----------GLGEKALEAFRMMLDEGYVPD-EITFVVVL 462 (601)
Q Consensus 398 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 462 (601)
++.+.|++++|...|++.. +.+...|..+...+... |++++|+..+++..+. .|+ ...+..+.
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg 125 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRG 125 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 4555555555555554332 33445555555566666 8888888888888874 454 45777777
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChh
Q 036160 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIE 540 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~ 540 (601)
.++...|++++|+..|++..+. . .+...+..++.+|...|++++|+..+++ +...| +...+..++.++...|+++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred HHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 8888888888888888888876 4 6677788888888888888888888887 34455 6777888888888888888
Q ss_pred HHHHHHHHHH
Q 036160 541 LDEKDAEKLL 550 (601)
Q Consensus 541 ~A~~~~~~~~ 550 (601)
+|+..++++.
T Consensus 203 ~A~~~~~~~~ 212 (217)
T 2pl2_A 203 EAARAAALEH 212 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=3.2e-12 Score=117.28 Aligned_cols=225 Identities=13% Similarity=-0.053 Sum_probs=178.5
Q ss_pred CcchhhHHHHHHHhcCCHHHHHHHHhhCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036160 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQ----AGEAEMALKCFRKMRLEGIKSNEFTLASCL 361 (601)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 361 (601)
+...+..+...+...|++++|...|++..++ ++.++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4556778888999999999999999987765 56678888889999 999999999999998876 667777777
Q ss_pred HhhcC----CCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHh----C
Q 036160 362 NGCSP----VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK----H 433 (601)
Q Consensus 362 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~ 433 (601)
..+.. .++.++|...++...+.+ +...+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCCCcc
Confidence 77777 888888888887776543 23344555555666 7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc----cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cC
Q 036160 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH----MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR----AG 505 (601)
Q Consensus 434 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 505 (601)
+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCc
Confidence 88888888888888764 45566777777776 88999999999888764 2 45677788888888 89
Q ss_pred ChHHHHHHhHhc-CCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCC
Q 036160 506 KFTEIENFITET-KLTPNALVWENLLGACSW----HGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 506 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 556 (601)
++++|...+++. ... +...+..+...|.. .+++++|.+.++++.+..|++
T Consensus 201 ~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999873 333 36778888888888 899999999999999998854
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=3.7e-14 Score=139.00 Aligned_cols=259 Identities=11% Similarity=0.031 Sum_probs=154.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHhhcCCCchhhHHHHHHHHHHh----C-CCCchhHHHHHH
Q 036160 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNE----FTLASCLNGCSPVATLANGRLLHSIAVKT----G-HLLDMFVSTALV 396 (601)
Q Consensus 326 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~ 396 (601)
...+...|++++|+..|++..+.... +. ..+..+...+...|+++.|...++...+. + .+.....+..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 33444555555555555555443211 11 23444444455555555555555544432 1 112234455566
Q ss_pred HHHHhcCCHHHHHHHHcCCCC---------CCHhHHHHHHHHHHhCCC-----------------hHHHHHHHHHHHHc-
Q 036160 397 AMYAKCGSIDDAEAVFKGSAL---------RDTASWNMMIGGYVKHGL-----------------GEKALEAFRMMLDE- 449 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~~- 449 (601)
..|...|++++|...+++... ....++..+...+...|+ +++|++.+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 666666666666666654321 123356666677777777 77777777665442
Q ss_pred ---CCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc-CCC
Q 036160 450 ---GYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITET-KLT 520 (601)
Q Consensus 450 ---~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 520 (601)
+-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..++.+|...|++++|...+++. ...
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11111 135666777777888888888888777654211112 226677778888888888888887762 111
Q ss_pred C-------cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 521 P-------NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM------ESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 521 p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
| ...++..++..+...|++++|...++++++..++. ...+..++.+|...|++++|..++++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 24566777778888888888888888888765543 23677788888888888888888887654
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=3.7e-14 Score=140.77 Aligned_cols=191 Identities=8% Similarity=0.015 Sum_probs=160.4
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 036160 388 DMFVSTALVAMYAKCGSI-DDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 463 (601)
+...+..+...+...|++ ++|.+.|++.. +.+...|..+..+|...|++++|.+.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 445555566666666666 66666665443 345778888999999999999999999999984 688788889999
Q ss_pred Hhhcc---------CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------CChHHHHHHhHh-cCCCC----
Q 036160 464 ACSHM---------GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA--------GKFTEIENFITE-TKLTP---- 521 (601)
Q Consensus 464 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~-~~~~p---- 521 (601)
++... |++++|.+.+++..+. .+.+...|..++.+|... |++++|++.|++ +.+.|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 99999 9999999999999876 233478899999999998 999999999998 44456
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHH
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
+...|..++.+|...|++++|++.++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999999999999999999999999999999999999975543
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.8e-14 Score=129.17 Aligned_cols=220 Identities=9% Similarity=-0.028 Sum_probs=181.4
Q ss_pred hcCCCchhhHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChH
Q 036160 364 CSPVATLANGRLLHSIAVKTGH---LLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGE 437 (601)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 437 (601)
....|+++.|...++.+.+... +.+..++..+...+...|++++|...|++.. +.+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4566899999999999988642 2246788889999999999999999998765 457889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-
Q 036160 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE- 516 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~- 516 (601)
+|++.|+++.+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999862 335678899999999999999999999999876 46655455555666788999999999976
Q ss_pred cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 517 TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPK----MESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 517 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
+...| +...+ .++..+...++.++|...++++++..|+ ++..+..++.+|...|++++|..++++..+..+
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 33334 43443 4677778888999999999999988774 367889999999999999999999999987654
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=2e-13 Score=116.97 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=145.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 464 (601)
+..+|..+...|.+.|++++|.+.|++.. +.+...|..+..++.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678889999999999999999998755 5578889999999999999999999999998852 3345577777888
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHH
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELD 542 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A 542 (601)
+...++++.|.+.+.+..+. .+.+...+..++.+|.+.|++++|++.+++ +...| +..+|..++.++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999876 234478889999999999999999999998 44566 788999999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 036160 543 EKDAEKLLELEPKME 557 (601)
Q Consensus 543 ~~~~~~~~~~~p~~~ 557 (601)
++.++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.1e-12 Score=118.43 Aligned_cols=243 Identities=8% Similarity=-0.011 Sum_probs=187.2
Q ss_pred HhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC--CCcc----cHHHHH
Q 036160 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN--KDLF----AYTAII 326 (601)
Q Consensus 253 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~ll 326 (601)
...+......+...|+++.|...++.+.+... .+...+..+...+...|++++|...+++..+ ++.. .|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34555677788899999999999999988653 3455788899999999999999999998765 2333 378888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036160 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406 (601)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (601)
..+...|++++|+..|++..+.. | .+..++..+..+|...|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~----------------------------------~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--T----------------------------------TRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--T----------------------------------TCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--c----------------------------------ccHHHHHHHHHHHHHccCHH
Confidence 99999999999999999987742 1 23456677888899999999
Q ss_pred HHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCc---HHHHHHHHH
Q 036160 407 DAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGL---IEEGKKHFS 479 (601)
Q Consensus 407 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~ 479 (601)
+|...|++.. +.+...|..+...+...+++++|.+.|+++.+. .|+ ...+..+..++...|+ +++|...++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 9999998766 346677877773444456999999999999985 454 5677778888888888 888999999
Q ss_pred HHHHHhCCCCCh------hHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 480 SIKKIYGITPTI------KHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 480 ~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
++.+...-.|+. ..|..++..|...|++++|.+.+++ +.+.| +...+..+.....
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 888764334442 5788899999999999999999998 44567 5566555554443
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1.5e-13 Score=130.47 Aligned_cols=261 Identities=12% Similarity=0.045 Sum_probs=179.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCCchhhHHHHHHHHHHh----CCC-CchhHHHHHHH
Q 036160 326 ITSYAQAGEAEMALKCFRKMRLEGIKSN---EFTLASCLNGCSPVATLANGRLLHSIAVKT----GHL-LDMFVSTALVA 397 (601)
Q Consensus 326 l~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 397 (601)
...+...|++++|...|++..+...... ...+..+...+...|+++.|...++..... +.. ....++..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4455566666666666666655421110 234555555666666666666666554432 111 12455666777
Q ss_pred HHHhcCCHHHHHHHHcCCC-----CCC----HhHHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH
Q 036160 398 MYAKCGSIDDAEAVFKGSA-----LRD----TASWNMMIGGYVKHGL--------------------GEKALEAFRMMLD 448 (601)
Q Consensus 398 ~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~~ 448 (601)
.|...|++++|...+++.. .++ ..++..+...+...|+ +++|.+.+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7778888888877776543 111 3367777788888888 8888888877654
Q ss_pred c----CCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc-C
Q 036160 449 E----GYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITET-K 518 (601)
Q Consensus 449 ~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 518 (601)
. +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..++..+...|++++|...+++. .
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11121 236777788889999999999999887654211122 337788889999999999999998872 2
Q ss_pred CC---C----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 519 LT---P----NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM------ESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 519 ~~---p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
.. + ...++..++..+...|++++|...++++++..|.. ..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11 1 15677888889999999999999999999876643 33777899999999999999999998876
Q ss_pred c
Q 036160 586 Q 586 (601)
Q Consensus 586 ~ 586 (601)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 4
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=7.8e-14 Score=136.43 Aligned_cols=290 Identities=12% Similarity=0.033 Sum_probs=154.1
Q ss_pred cchhhHHHHHHHhcCCHHHHHHHHhhCCC--C-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HH
Q 036160 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLAN--K-D----LFAYTAIITSYAQAGEAEMALKCFRKMRLE----GIKSN-EF 355 (601)
Q Consensus 288 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~ 355 (601)
...+......+...|++++|...|++..+ + + ...|..+...+...|++++|...+++.... +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33445566677777777777777776543 2 2 134556666777777777777777765432 11111 23
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhCC----C-CchhHHHHHHHHHHhcCC--------------------HHHHHH
Q 036160 356 TLASCLNGCSPVATLANGRLLHSIAVKTGH----L-LDMFVSTALVAMYAKCGS--------------------IDDAEA 410 (601)
Q Consensus 356 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~--------------------~~~A~~ 410 (601)
.+..+...+...|+++.|...+....+... . ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455555566666777777766665554311 0 113355556666666666 666655
Q ss_pred HHcCCC-----CC----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH----hhHHHHHHHhhccCcHHHHHH
Q 036160 411 VFKGSA-----LR----DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY-VPDE----ITFVVVLSACSHMGLIEEGKK 476 (601)
Q Consensus 411 ~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~ 476 (601)
.+++.. .. ...++..+...+...|++++|...+++..+..- .++. .++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 554322 00 123455555666666666666666666554210 1111 145555556666666666666
Q ss_pred HHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc-CC---CC----cHHHHHHHHHHHHhcCChhHHHH
Q 036160 477 HFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITET-KL---TP----NALVWENLLGACSWHGNIELDEK 544 (601)
Q Consensus 477 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~ 544 (601)
.+++..+...-.++ ..++..++..|...|++++|...+++. .+ .+ ...++..++..+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66655443111111 334555566666666666666666541 10 11 13455555666666666666666
Q ss_pred HHHHHHhcCCCCCc------ceeehhhhhhhcCChhhHH
Q 036160 545 DAEKLLELEPKMES------NYVFPSDISATQGRWNDFS 577 (601)
Q Consensus 545 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~ 577 (601)
.+++++++.+.... ++..++.++...|+...+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 66666666654421 2334444455555444433
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.3e-12 Score=116.00 Aligned_cols=205 Identities=11% Similarity=-0.020 Sum_probs=151.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036160 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398 (601)
Q Consensus 319 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 398 (601)
+..|..+...+...|++++|...++++.... | .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHHH
Confidence 3455566666667777777777776665542 1 123344555556
Q ss_pred HHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHH
Q 036160 399 YAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKH-GLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEE 473 (601)
Q Consensus 399 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 473 (601)
+...|++++|.+.+++.. +.+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 666666666666665443 34566788888889999 999999999999988433454 3577888889999999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLT--PNALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 474 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
|...++++.+. .+.+...+..++.++.+.|++++|...+++. ... .+...+..+...+...|+.+.|...++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999998876 2334778888999999999999999999883 333 466777777788889999999999999999
Q ss_pred hcCCCCCccee
Q 036160 551 ELEPKMESNYV 561 (601)
Q Consensus 551 ~~~p~~~~~~~ 561 (601)
+..|+++....
T Consensus 210 ~~~p~~~~~~~ 220 (225)
T 2vq2_A 210 ANFPYSEELQT 220 (225)
T ss_dssp HHCTTCHHHHH
T ss_pred HhCCCCHHHHH
Confidence 99998766544
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=1.3e-13 Score=142.03 Aligned_cols=162 Identities=20% Similarity=0.249 Sum_probs=138.9
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFAC 496 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 496 (601)
+...|+.|...+.+.|++++|++.|++.++. .|+ ...+..+..+|.+.|++++|++.|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4567888888899999999999999998884 565 457888888999999999999999988875 555 778888
Q ss_pred HHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChh
Q 036160 497 MIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 574 (601)
++.+|.+.|++++|++.+++ +.+.| +...|..++.++...|++++|++.++++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 45566 67888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 036160 575 DFSGVRALLSS 585 (601)
Q Consensus 575 ~A~~~~~~~~~ 585 (601)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887764
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=2.7e-10 Score=115.99 Aligned_cols=416 Identities=7% Similarity=0.003 Sum_probs=248.0
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC---cchhhHHHHHHHHHC-CCCchhHH
Q 036160 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD---QRCGESIHAVICKYG-FESDTLVG 190 (601)
Q Consensus 115 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 190 (601)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36667777777777777788888888877765 44455566666666666666 777777777776653 13666667
Q ss_pred HHHHHHHHhcCCc--------cHHHHHHhhcC------CC-CcccHHHHHHHHhc---------CCCchhHHHHHHHHHH
Q 036160 191 NALVSMYMENGRV--------SYGSRVFEAIA------HQ-DSVSWNALFSRFQD---------YESPDQGLRIFYQMLL 246 (601)
Q Consensus 191 ~~l~~~~~~~~~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~ 246 (601)
...+....+.++. +...++|+... ++ +...|...+..... .++.+.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666655554443 22335555432 11 22345555544322 2234455566665553
Q ss_pred CCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhh-------CCC---
Q 036160 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS-------LAN--- 316 (601)
Q Consensus 247 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~--- 316 (601)
.....-..+|..... +.+.-+...+..++.+. ..+++.|...+.+ +..
T Consensus 223 iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211111122211111 00000000011111110 0112223333222 111
Q ss_pred -----------C--C------cccHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCch
Q 036160 317 -----------K--D------LFAYTAIITSYAQAG-------EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370 (601)
Q Consensus 317 -----------~--~------~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 370 (601)
| + ...|...+.---..+ ..+++..+|++.... .+-....|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 012333333222221 123455677777665 334566666666666677888
Q ss_pred hhHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCC-------------C------------CHhHHH
Q 036160 371 ANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-------------R------------DTASWN 424 (601)
Q Consensus 371 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~------------~~~~~~ 424 (601)
+.|. .+++...... +.+...+-..+....+.|++++|.++|++... | ....|.
T Consensus 360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 9998888643 44666677788888889999999998886552 2 123688
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHhhc-cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036160 425 MMIGGYVKHGLGEKALEAFRMMLDE-GYVPDEITFVVVLSACSH-MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502 (601)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 502 (601)
..+....+.|+.+.|..+|.++++. + .+....|...+..-.+ .++++.|..+|+...+.+ +-+...+..+++...
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 8888888889999999999999885 2 1222334332222223 356899999999998873 344666778888888
Q ss_pred hcCChHHHHHHhHh-cCCCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 503 RAGKFTEIENFITE-TKLTP----NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 503 ~~g~~~~A~~~~~~-~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
..|+.+.|..+|++ +...| ....|...+..-.+.|+.+.+..+.+++.+..|+++.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 99999999999998 44344 3467888888888999999999999999999997643
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=9.4e-14 Score=135.83 Aligned_cols=292 Identities=11% Similarity=-0.018 Sum_probs=214.2
Q ss_pred CCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCC---cchhhHHHHHHHhcCCHHHHHHHHhhCCC-----C----
Q 036160 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN---HVVGTSLVDMYDKSGCLEDAGVAFDSLAN-----K---- 317 (601)
Q Consensus 250 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~---- 317 (601)
.+....+......+...|+++.|...++.+.+...... ..++..+...+...|++++|...+++... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556667777888899999999999999988743221 24677888899999999999998877532 1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHhhcCCCc--------------------hhh
Q 036160 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK-SN----EFTLASCLNGCSPVAT--------------------LAN 372 (601)
Q Consensus 318 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~--------------------~~~ 372 (601)
...++..+...|...|++++|...+++....... ++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2346777888899999999999999887653110 11 3367777778888899 899
Q ss_pred HHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-----CCC----HhHHHHHHHHHHhCCChHH
Q 036160 373 GRLLHSIAVKT----GH-LLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-----LRD----TASWNMMIGGYVKHGLGEK 438 (601)
Q Consensus 373 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~ 438 (601)
|...+....+. +. .....++..+...|...|++++|...+++.. .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 98888876653 21 1224567788889999999999999887654 122 2367888889999999999
Q ss_pred HHHHHHHHHHcCC-CCC----HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHH
Q 036160 439 ALEAFRMMLDEGY-VPD----EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTE 509 (601)
Q Consensus 439 A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 509 (601)
|...+++..+..- .++ ..++..+...|...|++++|...+++..+...-.++ ..++..++.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998875310 112 346778888899999999999999988764222222 5577888999999999999
Q ss_pred HHHHhHhc-------CCCC-cHHHHHHHHHHHHhcCChhH
Q 036160 510 IENFITET-------KLTP-NALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 510 A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~ 541 (601)
|.+.+++. +..+ ...++..+...+...|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99998872 1122 34566777777777776653
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=8.1e-13 Score=113.28 Aligned_cols=165 Identities=15% Similarity=0.037 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhh
Q 036160 390 FVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466 (601)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 466 (601)
..+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344555666666666666666666554 2244555566666666666666666666665541 223445555555566
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHH
Q 036160 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEK 544 (601)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 544 (601)
..|++++|.+.++++.+. .+.+...+..++.++...|++++|.+.+++ +...| +...+..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665544 123344555555555555555555555554 22222 44555555555555555555555
Q ss_pred HHHHHHhcCCCCC
Q 036160 545 DAEKLLELEPKME 557 (601)
Q Consensus 545 ~~~~~~~~~p~~~ 557 (601)
.++++++..|+++
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 5555555555443
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=7.6e-13 Score=129.61 Aligned_cols=270 Identities=14% Similarity=0.058 Sum_probs=172.5
Q ss_pred hhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCC---cchhhHHHHHHHhcCCHHHHHHHHhhCCCC---------Cccc
Q 036160 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN---HVVGTSLVDMYDKSGCLEDAGVAFDSLANK---------DLFA 321 (601)
Q Consensus 254 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 321 (601)
..+..+...+...|+++.|...++.+.+...... ..++..+...|...|++++|...+++..+. ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3344455566677777777777777776532211 124555556666666666666655543210 1233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhC-CCCchhHHHHHHHHHH
Q 036160 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYA 400 (601)
Q Consensus 322 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 400 (601)
+..+...|...|++++|...+++...... ..+ ......++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 44444555555555555555554433200 001 1112334555666666
Q ss_pred hcCC-----------------HHHHHHHHcCCC-------C--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CC
Q 036160 401 KCGS-----------------IDDAEAVFKGSA-------L--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY-VP 453 (601)
Q Consensus 401 ~~~~-----------------~~~A~~~~~~~~-------~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p 453 (601)
..|+ +++|.+.+++.. . .....+..+...+...|++++|++.+++..+..- .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 666666655432 1 1234677788889999999999999988876310 11
Q ss_pred C----HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc-CC-----
Q 036160 454 D----EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITET-KL----- 519 (601)
Q Consensus 454 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----- 519 (601)
+ ..++..+...|...|++++|...+++..+...-..+ ..++..++.++...|++++|...+++. .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 126778888999999999999999988765211111 467788899999999999999999873 21
Q ss_pred -CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 520 -TP-NALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 520 -~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
.+ ...++..++..+...|++++|.+.+++++++.+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 245788889999999999999999999998876
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=1.8e-12 Score=115.42 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 036160 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMID 499 (601)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 499 (601)
..|......+...|++++|+..|++..+..-+++...+..+..++...|++++|++.+++..+. .|+ ...+..++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHHH
Confidence 3444444444455555555555555444321134444444444455555555555555544432 232 344444555
Q ss_pred HHHhcCChHHHHHHhHh-cCCCC-cH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCcceeehhhhhh
Q 036160 500 ILGRAGKFTEIENFITE-TKLTP-NA-------LVWENLLGACSWHGNIELDEKDAEKLLELEPK--MESNYVFPSDISA 568 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~-~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 568 (601)
+|...|++++|++.+++ +...| +. ..|..++..+...|++++|+..++++++.+|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 55555555555555544 22223 22 23444444445555555555555555555554 4445555555555
Q ss_pred hcCCh---------------------------hhHHHHHHHHHhcCCc
Q 036160 569 TQGRW---------------------------NDFSGVRALLSSQGIK 589 (601)
Q Consensus 569 ~~g~~---------------------------~~A~~~~~~~~~~~~~ 589 (601)
..|+. ++|+.++++..+..|.
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 54444 8888888888776553
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=1.1e-11 Score=115.61 Aligned_cols=220 Identities=10% Similarity=0.006 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHhhc-------CCCch-------hhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036160 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCS-------PVATL-------ANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401 (601)
Q Consensus 336 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (601)
++|..+|++..... +-+...|..+...+. ..|+. ++|..+++...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68888999888752 345556666666554 35775 7888888888874223456678888888888
Q ss_pred cCCHHHHHHHHcCCC--CC-CHh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHh-hccCcHHHHHH
Q 036160 402 CGSIDDAEAVFKGSA--LR-DTA-SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC-SHMGLIEEGKK 476 (601)
Q Consensus 402 ~~~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 476 (601)
.|++++|.++|++.. .| +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999888654 23 344 78888888888999999999999988753 23334444333322 23689999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-C---CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-K---LTP--NALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 477 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
+|+...+.. +-+...|..++..+.+.|++++|+.+|++. . ++| ....|..++....+.|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888762 334778888888888999999999999873 2 355 35678888888888999999999999999
Q ss_pred hcCCCCCcc
Q 036160 551 ELEPKMESN 559 (601)
Q Consensus 551 ~~~p~~~~~ 559 (601)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999976544
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1.9e-11 Score=104.56 Aligned_cols=169 Identities=12% Similarity=-0.040 Sum_probs=146.7
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 3457778888999999999999999988742 345668888999999999999999999999876 2345788889999
Q ss_pred HHHhcCChHHHHHHhHhc-CCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHH
Q 036160 500 ILGRAGKFTEIENFITET-KLT-PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 577 (601)
.+...|++++|.+.+++. ... .+...+..++..+...|++++|...++++++..|+++..+..++.++...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999983 333 478889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcCC
Q 036160 578 GVRALLSSQGIKKE 591 (601)
Q Consensus 578 ~~~~~~~~~~~~~~ 591 (601)
.++++..+..+...
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 99999887655443
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=7.5e-11 Score=110.03 Aligned_cols=215 Identities=7% Similarity=-0.056 Sum_probs=151.0
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHcCCC----CCCHhHHHHHHHHHHh
Q 036160 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYA-------KCGSI-------DDAEAVFKGSA----LRDTASWNMMIGGYVK 432 (601)
Q Consensus 371 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 432 (601)
+.|..+|+.+.... +.++..|..++..+. +.|++ ++|..+|++.. +.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45667777777653 345666666666654 34775 78888887533 3356678888888888
Q ss_pred CCChHHHHHHHHHHHHcCCCCCH-h-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChHH
Q 036160 433 HGLGEKALEAFRMMLDEGYVPDE-I-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG-RAGKFTE 509 (601)
Q Consensus 433 ~~~~~~A~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 509 (601)
.|++++|.++|+++.+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887 35543 2 6777777888888888888888887753 1233445544433322 2688888
Q ss_pred HHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCC-CCcceeehhhhhhhcCChhhHHHHHHHH
Q 036160 510 IENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLEL---EPK-MESNYVFPSDISATQGRWNDFSGVRALL 583 (601)
Q Consensus 510 A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 583 (601)
|..+|++ +...| +...|..++..+.+.|++++|+.+++++++. .|+ ....|..++..+...|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887 33344 6777888888888888888888888888885 443 4557777788888888888888888888
Q ss_pred HhcCCcC
Q 036160 584 SSQGIKK 590 (601)
Q Consensus 584 ~~~~~~~ 590 (601)
.+..+..
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 7766643
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=3.3e-13 Score=126.63 Aligned_cols=236 Identities=15% Similarity=0.078 Sum_probs=114.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHh------CCC
Q 036160 320 FAYTAIITSYAQAGEAEMALKCFRKMRLE-------GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT------GHL 386 (601)
Q Consensus 320 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 386 (601)
.++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 55777888888999999999999888763 12223344555555566666666666666555443 111
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCCH-hhHH
Q 036160 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE------GYVPDE-ITFV 459 (601)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~~-~~~~ 459 (601)
|. ...++..+...+...|++++|...++++.+. +-.|+. ..+.
T Consensus 108 ~~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 108 PA------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HH------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hH------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 11 1223444445555555555555555554432 111211 2344
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcC----------CCCc-
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIY-----GITPT-IKHFACMIDILGRAGKFTEIENFITETK----------LTPN- 522 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~- 522 (601)
.+...+...|++++|.+.++++.+.. +..|. ..++..++.+|...|++++|.+.+++.. ..|.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 55555555555555555555554321 00111 3345555555555555555555555411 1111
Q ss_pred ------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 523 ------ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 523 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
...+......+...+.+.+|...++++.+..|.++.++..++.+|...|++++|.+++++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111122222233445555555566666666665666666666666666666666666665543
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=2e-12 Score=122.69 Aligned_cols=135 Identities=13% Similarity=0.031 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----h
Q 036160 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGY-VPD----EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----I 491 (601)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~ 491 (601)
..+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 4567777888888999999998888765310 112 126778888899999999999999987654221222 5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhHhc-CC------CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 492 KHFACMIDILGRAGKFTEIENFITET-KL------TP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 492 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
.++..++..+...|++++|...+++. .. .+ ...++..++..+...|++++|...+++++++.++
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 57778889999999999999998873 21 11 2457788899999999999999999999998774
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=1.7e-11 Score=108.91 Aligned_cols=202 Identities=10% Similarity=0.050 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHH
Q 036160 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGY 430 (601)
Q Consensus 354 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 430 (601)
+..+......+...|++++|...|+...+...+++...+..+..++...|++++|...|++.. +.+...|..+...+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 344445555555556666666666555555433344444445555555555555555554332 22344455555555
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-H-------hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---hhHHHHHHH
Q 036160 431 VKHGLGEKALEAFRMMLDEGYVPD-E-------ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT---IKHFACMID 499 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 499 (601)
...|++++|++.+++..+. .|+ . ..|..+...+...|++++|.+.++++.+ ..|+ ...+..++.
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 5555555555555555543 222 2 2244444444555555555555554442 2332 334444444
Q ss_pred HHHhcCChHHHHHHhHhcC-C-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhh
Q 036160 500 ILGRAGKFTEIENFITETK-L-TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 567 (601)
+|...|+. .++++. + ..+...+.... ....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 44433321 111100 0 11222222111 22334459999999999999999877666665543
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.5e-09 Score=110.57 Aligned_cols=446 Identities=9% Similarity=0.013 Sum_probs=239.2
Q ss_pred hhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC---hhHHHHH
Q 036160 32 GQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL---ADNALKV 108 (601)
Q Consensus 32 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~ 108 (601)
..+.+..|+.....+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.+...|...+..-.+.+. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344455556555544 457778888888888888888888888888875 45567777777777777777 8888888
Q ss_pred HhcCCC-----CCccchHHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHHhc--------
Q 036160 109 FYRIKD-----PDVVAWGAIITCLDQQGCC--------QEAAKIFNLMRE-SSV-KPN-QFVLTSLVRATTE-------- 164 (601)
Q Consensus 109 ~~~~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~~-------- 164 (601)
|++... |++..|...+....+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 887664 5666777766655554443 233466665544 355 443 3455555544332
Q ss_pred -cCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHH
Q 036160 165 -TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243 (601)
Q Consensus 165 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 243 (601)
.++++.+.++|+..+......-..+|......-...+. ..+.+++.+. ...++.|...+.+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~e 267 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQD 267 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHHH
Confidence 22355666777776642111111222221111100010 0111111110 0011112222221
Q ss_pred HHHC--CCC---------------C-----C---HhhHHHHHHHhcCCC-------ChhHHHHHHHHHHHccCCCCcchh
Q 036160 244 MLLK--GFK---------------P-----N---MCTFIVILKACSSLS-------DVGFGKQLHAHTIKHSLDGNHVVG 291 (601)
Q Consensus 244 m~~~--g~~---------------p-----~---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~ 291 (601)
+... ++. | + ...|...+.---..+ ..+.+..+|+++.... +-...+|
T Consensus 268 ~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW 346 (679)
T 4e6h_A 268 WLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIW 346 (679)
T ss_dssp HHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHH
T ss_pred HHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHH
Confidence 1100 000 0 0 011222222111111 1123344555555542 3355566
Q ss_pred hHHHHHHHhcCCHHHHH-HHHhhCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcC---------CCCC-----
Q 036160 292 TSLVDMYDKSGCLEDAG-VAFDSLAN--K-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEG---------IKSN----- 353 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~-~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---------~~p~----- 353 (601)
...+..+...|+.++|. .+|++... | +...|-..+...-+.|++++|.++|+++.... ..|+
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 66666666666666664 66666443 2 33345555566666777777777777766531 0131
Q ss_pred -------HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHcCCC---CCCHhH
Q 036160 354 -------EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC-GSIDDAEAVFKGSA---LRDTAS 422 (601)
Q Consensus 354 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~---~~~~~~ 422 (601)
...|...+....+.|..+.|+.+|..+.+....+...+|...+..-.+. ++.+.|..+|+.+. +.+...
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHH
Confidence 2346666666666777788888887777651122233343333333343 34778888777655 345666
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD--EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 500 (601)
|...+......|+.+.|..+|++.......+. ...|...+.--.+.|+.+.+.++.+++.+. .|+......+++-
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~r 583 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHH
Confidence 77777777777888888888888777532121 235666666666778888888888888776 3454444444544
Q ss_pred H
Q 036160 501 L 501 (601)
Q Consensus 501 ~ 501 (601)
|
T Consensus 584 y 584 (679)
T 4e6h_A 584 Y 584 (679)
T ss_dssp T
T ss_pred h
Confidence 4
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=4.9e-11 Score=115.35 Aligned_cols=228 Identities=10% Similarity=0.012 Sum_probs=128.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCC------CCchhHHHHH
Q 036160 327 TSYAQAGEAEMALKCFRKMRLEGI-KSN----EFTLASCLNGCSPVATLANGRLLHSIAVKTGH------LLDMFVSTAL 395 (601)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 395 (601)
..+...|++++|+..+++....-. .++ ..++..+...+...|+++.|...+....+.-. .....++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 344555666666666665544210 111 22344444445555555555555544443210 0112345556
Q ss_pred HHHHHhcCCHHHHHHHHcCCC-----CCC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhhHHHH
Q 036160 396 VAMYAKCGSIDDAEAVFKGSA-----LRD----TASWNMMIGGYVKHGLGEKALEAFRMMLDE----GYVPD-EITFVVV 461 (601)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l 461 (601)
..+|...|++++|...|++.. .++ ..++..+...|...|++++|++.+++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 666666666666666665433 111 235666777777777777777777776652 22133 3456667
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHhHhcCCCC-cHHHHHHHHHHHH
Q 036160 462 LSACSHMGLIEEGKKHFSSIKKIYGITPT---IKHFACMIDILGRAGK---FTEIENFITETKLTP-NALVWENLLGACS 534 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 534 (601)
..++...|++++|...+++..+...-..+ ...+..+...+...|+ +++|+.++++.+..| ....+..++..|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 77777777777777777766543111111 2234556666777777 677777777765444 2345666777777
Q ss_pred hcCChhHHHHHHHHHHhcCC
Q 036160 535 WHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p 554 (601)
..|++++|...+++++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 77777777777777776544
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.9e-12 Score=128.45 Aligned_cols=180 Identities=6% Similarity=-0.067 Sum_probs=156.8
Q ss_pred HHHHHHHHcCC---CCCCHhHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHH
Q 036160 405 IDDAEAVFKGS---ALRDTASWNMMIGGYVKHGLG-EKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFS 479 (601)
Q Consensus 405 ~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 479 (601)
++++...++.. .+.+...|..+...+...|++ ++|++.|++..+. .|+ ...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444432 345778899999999999999 9999999999985 454 6689999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhc---------CChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc--------CChh
Q 036160 480 SIKKIYGITPTIKHFACMIDILGRA---------GKFTEIENFITE-TKLTP-NALVWENLLGACSWH--------GNIE 540 (601)
Q Consensus 480 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~--------g~~~ 540 (601)
+..+ +.|+...+..+..+|... |++++|++.+++ +...| +...|..++.+|... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 468888899999999999 999999999998 44556 688999999999999 9999
Q ss_pred HHHHHHHHHHhcCC---CCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 541 LDEKDAEKLLELEP---KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 541 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+|+..++++++++| +++..+..++.+|...|++++|.+.|++..+..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999 99999999999999999999999999998876543
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=121.30 Aligned_cols=245 Identities=13% Similarity=0.021 Sum_probs=160.6
Q ss_pred CcchhhHHHHHHHhcCCHHHHHHHHhhCCC--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 036160 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLAN--------K---DLFAYTAIITSYAQAGEAEMALKCFRKMRLE------G 349 (601)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~ 349 (601)
...++..+...+...|++++|...|+++.+ . ....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345678889999999999999999988754 2 2356778888999999999999999998765 2
Q ss_pred CCC-CHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHH
Q 036160 350 IKS-NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428 (601)
Q Consensus 350 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 428 (601)
..| ....+..+...+...|++++|...+..+.+... +.+..-.......+..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------------------------~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE------------------------KVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH------------------------HHHCTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH------------------------HhcCCCChHHHHHHHHHHH
Confidence 222 344666777777788888888877776654310 0000000112345666777
Q ss_pred HHHhCCChHHHHHHHHHHHHc------CCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHh------CCCCC-hhHH
Q 036160 429 GYVKHGLGEKALEAFRMMLDE------GYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIY------GITPT-IKHF 494 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~ 494 (601)
.+...|++++|+++++++.+. +..|+. .++..+...|...|++++|.+.++++.+.. ...+. ...+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 788888888888888877763 223332 367778888899999999999998887531 11122 1222
Q ss_pred ------HHHHHHHHhcCChHHHHHHhHhcC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 495 ------ACMIDILGRAGKFTEIENFITETK-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 495 ------~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
..+...+...+.+.+|...+++.. ..| +..++..++.+|.+.|++++|.+.+++++++.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222333444555666666666643 344 5678899999999999999999999999998874
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=5.3e-12 Score=122.20 Aligned_cols=225 Identities=9% Similarity=-0.039 Sum_probs=172.0
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHcCCC-----CC-----CHhHHH
Q 036160 360 CLNGCSPVATLANGRLLHSIAVKT----GHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSA-----LR-----DTASWN 424 (601)
Q Consensus 360 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~-----~~~~~~ 424 (601)
....+...|+++.|...+....+. +..+ ...++..+...|...|++++|...+++.. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344567889999999999998864 2122 34678889999999999999988886543 11 234788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hhHHH
Q 036160 425 MMIGGYVKHGLGEKALEAFRMMLDEGY-VPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKIY---GITPT-IKHFA 495 (601)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~~~~ 495 (601)
.+...|...|++++|+..+++..+..- .++. .++..+..+|...|++++|.+.+++..+.. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998876311 1222 378888899999999999999999887621 22133 66788
Q ss_pred HHHHHHHhcCChHHHHHHhHhc-CC-----CC-cHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCcceeehhh
Q 036160 496 CMIDILGRAGKFTEIENFITET-KL-----TP-NALVWENLLGACSWHGN---IELDEKDAEKLLELEPKMESNYVFPSD 565 (601)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 565 (601)
.++.++.+.|++++|...+++. .+ .| ....+..+...+...|+ +++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999872 21 23 23345667788888898 77777777766 334445567888999
Q ss_pred hhhhcCChhhHHHHHHHHHh
Q 036160 566 ISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 566 ~~~~~g~~~~A~~~~~~~~~ 585 (601)
+|...|++++|..++++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999874
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=3.3e-10 Score=109.08 Aligned_cols=288 Identities=11% Similarity=-0.001 Sum_probs=148.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC----CCcc----cHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----HHHHH
Q 036160 293 SLVDMYDKSGCLEDAGVAFDSLAN----KDLF----AYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNE----FTLAS 359 (601)
Q Consensus 293 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~----~~~~~ 359 (601)
.....+...|++++|...+++... .+.. .++.+...+...|++++|...+++...... .++. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344455667777777777665321 1211 344455566677777777777776554311 1111 12344
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHcCCC----C---C-CHhHHH
Q 036160 360 CLNGCSPVATLANGRLLHSIAVKT----GHL--L-DMFVSTALVAMYAKCGSIDDAEAVFKGSA----L---R-DTASWN 424 (601)
Q Consensus 360 ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~---~-~~~~~~ 424 (601)
+...+...|+++.|...++...+. +.. | ....+..+...+...|++++|...+++.. . + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 455566667777777766665542 111 2 22344455666666677766666665322 0 0 123455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHH-----HHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---hhHHH
Q 036160 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFV-----VVLSACSHMGLIEEGKKHFSSIKKIYGITPT---IKHFA 495 (601)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~ 495 (601)
.+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...++..... ...+. ...+.
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHH
Confidence 5666666666777776666666543111111 1111 1122355666666666666655432 11010 11344
Q ss_pred HHHHHHHhcCChHHHHHHhHhc-------CCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhh
Q 036160 496 CMIDILGRAGKFTEIENFITET-------KLTPNA-LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567 (601)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 567 (601)
.+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++++..+... ....+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~ 332 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHF 332 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHH
Confidence 5556666666666666666652 111122 2444555666666666667766666666655321 22333
Q ss_pred hhcCChhhHHHHHHHHHhcCC
Q 036160 568 ATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 568 ~~~g~~~~A~~~~~~~~~~~~ 588 (601)
...| +....+++.+....+
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTC
T ss_pred HHcc--HHHHHHHHHHHhCCC
Confidence 3444 455555555554333
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=3.5e-11 Score=124.09 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=144.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHH
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLS 463 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 463 (601)
+...++.|..+|.+.|++++|++.|++.. +.+...|..+..+|.+.|++++|++.|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 46678888999999999999999998755 457889999999999999999999999999985 565 468999999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChh
Q 036160 464 ACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIE 540 (601)
Q Consensus 464 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~ 540 (601)
+|...|++++|++.|++..+. .|+ ...|..++.+|.+.|++++|++.|++ +.+.| +...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999876 555 78999999999999999999999998 55677 6789999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 036160 541 LDEKDAEKLLELEPK 555 (601)
Q Consensus 541 ~A~~~~~~~~~~~p~ 555 (601)
+|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987654
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=1.3e-10 Score=102.71 Aligned_cols=65 Identities=8% Similarity=0.000 Sum_probs=57.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC---cceeehhhhhhhcCChhhHHHHHHHHHhcCCcCCC
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKME---SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 592 (601)
.++..+.+.|++++|+..++++++..|+++ .++..++.+|...|++++|++.++.+...++..+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 456778899999999999999999999876 56889999999999999999999999988776553
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=6.3e-10 Score=107.26 Aligned_cols=225 Identities=9% Similarity=-0.026 Sum_probs=104.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCC-----C-CchhHHHHH
Q 036160 327 TSYAQAGEAEMALKCFRKMRLEGI-KSN----EFTLASCLNGCSPVATLANGRLLHSIAVKTGH-----L-LDMFVSTAL 395 (601)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l 395 (601)
..+...|++++|+..+++...... .++ ..++..+...+...|+++.|...+....+... . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345567777777777777654311 122 22344444555555555555555554443210 0 012334445
Q ss_pred HHHHHhcCCHHHHHHHHcCCCC-----C----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHhhHHHHH
Q 036160 396 VAMYAKCGSIDDAEAVFKGSAL-----R----DTASWNMMIGGYVKHGLGEKALEAFRMMLDE----GYVPDEITFVVVL 462 (601)
Q Consensus 396 ~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~l~ 462 (601)
..+|...|++++|.+.|++... + ...++..+...|...|++++|++.+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 5555555555555554443220 1 1223444555555555555555555555441 1111123444555
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHhHhcCCCCc-HHHHHHHHHHHHh
Q 036160 463 SACSHMGLIEEGKKHFSSIKKIYGITPT---IKHFACMIDILGRAGK---FTEIENFITETKLTPN-ALVWENLLGACSW 535 (601)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~ 535 (601)
.++.+.|++++|...+++..+...-.++ ...+..+...+...|+ +++|+.++++....|+ ...+..++..|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 5555555555555555555443111111 2233334444444444 5555555555432222 2334445555555
Q ss_pred cCChhHHHHHHHHHHh
Q 036160 536 HGNIELDEKDAEKLLE 551 (601)
Q Consensus 536 ~g~~~~A~~~~~~~~~ 551 (601)
.|++++|...++++++
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=5.3e-12 Score=103.47 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=112.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 036160 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRA 504 (601)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 504 (601)
...+...|++++|+..+++.... .|+. ..+..+...|.+.|++++|++.|++..+. .|+ ...|..++.+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 33455667888888888887653 4443 36667888899999999999999998876 454 78889999999999
Q ss_pred CChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCCCcceeehhhhhhhcCC
Q 036160 505 GKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKD-AEKLLELEPKMESNYVFPSDISATQGR 572 (601)
Q Consensus 505 g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 572 (601)
|++++|+..|++ +.+.| +...+..++..+.+.|++++|.+. ++++++++|+++.++...+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999988 45667 678899999999999998776654 689999999999999888888888775
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=1.1e-10 Score=106.01 Aligned_cols=95 Identities=9% Similarity=-0.055 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCC--CC-C---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----Hhh
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSA--LR-D---TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD----EIT 457 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~ 457 (601)
+...+..+...+.+.|++++|...|+++. .| + ...+..+..++.+.|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 34445555566666666666666666544 12 2 445555666666666666666666666664 221 124
Q ss_pred HHHHHHHhhc--------cCcHHHHHHHHHHHHHH
Q 036160 458 FVVVLSACSH--------MGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 458 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 484 (601)
+..+..++.. .|++++|...|+++.+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4455555555 66666666666666654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=3e-11 Score=111.67 Aligned_cols=186 Identities=8% Similarity=-0.019 Sum_probs=114.9
Q ss_pred HHHhcCCHHHHHHHHcCCC-------CC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HhhHHHHHH
Q 036160 398 MYAKCGSIDDAEAVFKGSA-------LR--DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY---VPD--EITFVVVLS 463 (601)
Q Consensus 398 ~~~~~~~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~ 463 (601)
.|...|++++|...|++.. .+ ...+|+.+..+|.+.|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556555555554322 11 134667777777788888888887777765210 111 236777777
Q ss_pred Hhhcc-CcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH--------HHHHHH
Q 036160 464 ACSHM-GLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITE-TKLTPNA--------LVWENL 529 (601)
Q Consensus 464 ~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~--------~~~~~l 529 (601)
.|... |++++|+..|++..+...-..+ ..++..++..+.+.|++++|+..+++ +...|+. ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887764211111 34577788888888888888888887 2233321 146677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCccee-----ehhhhhh--hcCChhhHHHHHHHH
Q 036160 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYV-----FPSDISA--TQGRWNDFSGVRALL 583 (601)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-----~l~~~~~--~~g~~~~A~~~~~~~ 583 (601)
+.++...|++++|+..++++++++|+.+.... .++..+. ..+++++|+..|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 77788888888888888888888887655432 2334443 456777777777644
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=4.1e-11 Score=110.37 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=148.7
Q ss_pred hcCCCchhhHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-----------CCCHhHHHH
Q 036160 364 CSPVATLANGRLLHSIAVKT-------GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-----------LRDTASWNM 425 (601)
Q Consensus 364 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~ 425 (601)
....|+++.|...+++..+. ..+....++..+...|...|++++|...+++.. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 35678888888888777653 223346677888888899999999988886543 113456788
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hh
Q 036160 426 MIGGYVKHGLGEKALEAFRMMLDE------GYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIY-----GITPT-IK 492 (601)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~ 492 (601)
+...+...|++++|.+.++++.+. .-.|+ ..++..+...|...|++++|...++++.+.. +..|+ ..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 888888999999999998888764 11232 3467778888888999999999888876541 11232 55
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHhcC----------CCC-cHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCC
Q 036160 493 HFACMIDILGRAGKFTEIENFITETK----------LTP-NALVWENLLGACSWHGNI------ELDEKDAEKLLELEPK 555 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~p~ 555 (601)
++..++.+|.+.|++++|...+++.. ..+ ....+..+.......+.. ..+...++......|.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 77788888889999999888887621 223 233444444444433332 2233333332233455
Q ss_pred CCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 556 MESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 556 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
.+.++..++.+|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566788899999999999999999998765
No 88
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=6.7e-11 Score=114.12 Aligned_cols=223 Identities=13% Similarity=0.025 Sum_probs=166.3
Q ss_pred HhhcCCCchhhHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHcCCC-------C---CCHhHHHHH
Q 036160 362 NGCSPVATLANGRLLHSIAVKTGH-LL----DMFVSTALVAMYAKCGSIDDAEAVFKGSA-------L---RDTASWNMM 426 (601)
Q Consensus 362 ~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~---~~~~~~~~l 426 (601)
..+...|+++.|...+..+.+... .+ ...++..+...|...|+++.|...+++.. . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345688999999999999886421 12 34577888999999999999988776433 1 124578889
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhHHHHHH
Q 036160 427 IGGYVKHGLGEKALEAFRMMLDEGY-VPD----EITFVVVLSACSHMGLIEEGKKHFSSIKKIY---GITPTIKHFACMI 498 (601)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~ 498 (601)
...|...|++++|.+.+++..+..- .++ ..++..+..+|...|++++|.+.+++..+.. +.+....++..++
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 9999999999999999998876310 112 2367788889999999999999999887621 2222366788899
Q ss_pred HHHHhcCChHHHHHHhHhc-C---C--CC-cHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 499 DILGRAGKFTEIENFITET-K---L--TP-NALVWENLLGACSWHGN---IELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~-~---~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
.++.+.|++++|...+++. . . .| ....+..+...+...|+ +++|...+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 9999999999999999872 1 1 23 23455666666777788 77777777762 233334556778999999
Q ss_pred hcCChhhHHHHHHHHHh
Q 036160 569 TQGRWNDFSGVRALLSS 585 (601)
Q Consensus 569 ~~g~~~~A~~~~~~~~~ 585 (601)
..|++++|..++++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998864
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=1.3e-09 Score=98.15 Aligned_cols=244 Identities=9% Similarity=-0.020 Sum_probs=153.6
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHH
Q 036160 296 DMYDKSGCLEDAGVAFDSLANKDLFA-YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374 (601)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 374 (601)
+-..-.|.+..++.-...+...+... -.-+.++|...|++... ..-.|....+..+...+. .+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----HH
Confidence 44455677777777665554433322 22234777777777642 123344434444333332 22 55
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCC-----CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 036160 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-----RDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449 (601)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 449 (601)
..++.....+ .++......+..++...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666555544 34444555777888888888888888876532 34556777788888888888888888888774
Q ss_pred CCCC-----CHhhHHHHHHHh--hccC--cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC-C
Q 036160 450 GYVP-----DEITFVVVLSAC--SHMG--LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-L 519 (601)
Q Consensus 450 ~~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 519 (601)
.| +..+...|+.++ ...| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+. .
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66 355555666553 3334 788888888887643 4553333344447888888888888887532 1
Q ss_pred ----------CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccee
Q 036160 520 ----------TP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561 (601)
Q Consensus 520 ----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 561 (601)
.| |+.++..++......|+ +|.++++++.+..|++|.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 24 56666566655666676 778888888888887765543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=1.1e-09 Score=98.66 Aligned_cols=241 Identities=11% Similarity=-0.026 Sum_probs=163.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036160 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406 (601)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (601)
+-..-.|++..++.-..++ ...........+.+++...|..... ..-.|....+..+... ...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence 3444578888887733322 1122222333344555555554421 0122333333333333 3333
Q ss_pred HHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHH
Q 036160 407 DAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIK 482 (601)
Q Consensus 407 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 482 (601)
|...|++.. .++...+..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666544 34556667888999999999999999999877543233 3577788899999999999999999997
Q ss_pred HHhCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHhHhcC-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 483 KIYGITP-----TIKHFACMIDI--LGRAG--KFTEIENFITETK-LTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 483 ~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
+. .| +..+...|+.+ ....| ++++|..+|+++. ..|+..+...+..++.+.|++++|++.++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65 66 34555555555 33344 8999999999954 3455344445555889999999999999988876
Q ss_pred ----------CCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 553 ----------EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 553 ----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+|+|+.++.+++.+....|+ +|.++++++++..|.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 48899999888888888997 999999999986653
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.8e-10 Score=91.37 Aligned_cols=129 Identities=19% Similarity=0.289 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 502 (601)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 4445555555555555555555555432 223344445555555555555555555555443 1222334444445555
Q ss_pred hcCChHHHHHHhHhc-CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 503 RAGKFTEIENFITET-KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 503 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
..|++++|.+.++++ ...| +...+..++..+...|++++|...++++++..|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 555555555555441 1122 344444444445555555555555555554444
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=3.1e-11 Score=98.82 Aligned_cols=126 Identities=7% Similarity=-0.063 Sum_probs=105.7
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcC
Q 036160 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHG 537 (601)
Q Consensus 461 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g 537 (601)
|...+...|++++|++.++.... ..|+ ...+..++.+|.+.|++++|++.|++ +.+.| +...|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566778999999999887653 3454 55667899999999999999999998 55667 7889999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHH-HHHHHhcCCc
Q 036160 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGV-RALLSSQGIK 589 (601)
Q Consensus 538 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~ 589 (601)
++++|+..++++++++|+++.++..++.+|...|++++|.+. +++..+..|.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999987775 5877775553
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=3.5e-10 Score=102.72 Aligned_cols=167 Identities=11% Similarity=-0.018 Sum_probs=80.0
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD----EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKH 493 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 493 (601)
+...+-.+...+.+.|++++|+..|+++.+. .|+ ...+..+..+|.+.|++++|...|+.+.+.+.-.|. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3444444445555555555555555555543 222 234444555555555555555555555544211112 234
Q ss_pred HHHHHHHHHh--------cCChHHHHHHhHh-cCCCCc-HHHH-----------------HHHHHHHHhcCChhHHHHHH
Q 036160 494 FACMIDILGR--------AGKFTEIENFITE-TKLTPN-ALVW-----------------ENLLGACSWHGNIELDEKDA 546 (601)
Q Consensus 494 ~~~l~~~~~~--------~g~~~~A~~~~~~-~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 546 (601)
+..++.++.. .|++++|+..|++ +...|+ .... ..++..+.+.|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4444555555 5555555555554 222231 1112 33344555555555555555
Q ss_pred HHHHhcCCCCC---cceeehhhhhhhc----------CChhhHHHHHHHHHhcC
Q 036160 547 EKLLELEPKME---SNYVFPSDISATQ----------GRWNDFSGVRALLSSQG 587 (601)
Q Consensus 547 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 587 (601)
+++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 55555555432 2444555555544 55555555555555433
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=6.9e-11 Score=122.67 Aligned_cols=167 Identities=11% Similarity=0.000 Sum_probs=102.6
Q ss_pred HhcCCHHHHHHHHcCCC-----------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhc
Q 036160 400 AKCGSIDDAEAVFKGSA-----------LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSH 467 (601)
Q Consensus 400 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 467 (601)
...|++++|.+.+++.. +.+...|..+..++...|++++|+..|+++.+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44555666655554432 334555666666666667777777777666664 33 33456666666666
Q ss_pred cCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHH
Q 036160 468 MGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEK 544 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 544 (601)
.|++++|.+.|++..+. .| +...+..+..+|.+.|++++ ++.+++ +...| +...|..++.++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777766654 33 35566666667777777766 666665 33444 45666666667777777777777
Q ss_pred HHHHHHhcCCCCCcceeehhhhhhhcCC
Q 036160 545 DAEKLLELEPKMESNYVFPSDISATQGR 572 (601)
Q Consensus 545 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 572 (601)
.++++++++|++..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777666666666666655443
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.15 E-value=6.7e-11 Score=96.19 Aligned_cols=102 Identities=9% Similarity=-0.060 Sum_probs=73.2
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeeh
Q 036160 487 ITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563 (601)
Q Consensus 487 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 563 (601)
+.|+ ...+..++..+.+.|++++|+..|++ +...| ++..|..++.++...|++++|+..++++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3444 45666677777777777777777776 33455 567777777777777777777777777777777777777777
Q ss_pred hhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 564 SDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 564 ~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
+.+|...|++++|+..|++..+..+
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7777777777777777777766443
No 96
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=3.6e-09 Score=101.84 Aligned_cols=287 Identities=11% Similarity=0.098 Sum_probs=151.9
Q ss_pred HhcCCCChhHHHHHHHHHHHccCCCCcc----hhhHHHHHHHhcCCHHHHHHHHhhCCC-----CCc----ccHHHHHHH
Q 036160 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHV----VGTSLVDMYDKSGCLEDAGVAFDSLAN-----KDL----FAYTAIITS 328 (601)
Q Consensus 262 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~ll~~ 328 (601)
.+...|+++.|...++.........+.. .++.+...+...|++++|...+++... .+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4445677777777777766543222211 344555666667777777766665432 111 123445556
Q ss_pred HHhcCChhHHHHHHHHHHHc----CCC--CC-HHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCC----CchhHHHHHHH
Q 036160 329 YAQAGEAEMALKCFRKMRLE----GIK--SN-EFTLASCLNGCSPVATLANGRLLHSIAVKTGHL----LDMFVSTALVA 397 (601)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~----~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 397 (601)
+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+......... .....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66677777777777665442 111 21 233444555666677777777777666654221 12234556666
Q ss_pred HHHhcCCHHHHHHHHcCCC----CC-CHhHHH-----HHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHH
Q 036160 398 MYAKCGSIDDAEAVFKGSA----LR-DTASWN-----MMIGGYVKHGLGEKALEAFRMMLDEGYVPD---EITFVVVLSA 464 (601)
Q Consensus 398 ~~~~~~~~~~A~~~~~~~~----~~-~~~~~~-----~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~ 464 (601)
.+...|++++|...+++.. .+ ....+. ..+..+...|++++|...+++.......+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 6677777777776665432 11 111121 122335567777777777766654321111 1134455566
Q ss_pred hhccCcHHHHHHHHHHHHHHh---CCCCCh-hHHHHHHHHHHhcCChHHHHHHhHhc-CCCCcHHHHHHHHHHHHhcCCh
Q 036160 465 CSHMGLIEEGKKHFSSIKKIY---GITPTI-KHFACMIDILGRAGKFTEIENFITET-KLTPNALVWENLLGACSWHGNI 539 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~---~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 539 (601)
+...|++++|...++...... +..++. ..+..+..++...|+.++|...+++. ...+.. .....+...|
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~----g~~~~~~~~g-- 336 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT----GFISHFVIEG-- 336 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----CCCHHHHTTH--
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc----cHHHHHHHcc--
Confidence 667777777777776664431 111111 24555566667777777777776652 111110 1112233334
Q ss_pred hHHHHHHHHHHhcCC
Q 036160 540 ELDEKDAEKLLELEP 554 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p 554 (601)
+....+++.+....|
T Consensus 337 ~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC
Confidence 455566666666666
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=3.4e-10 Score=104.11 Aligned_cols=171 Identities=10% Similarity=-0.060 Sum_probs=138.7
Q ss_pred HHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 036160 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487 (601)
Q Consensus 409 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 487 (601)
...+....+.+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++++...
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--- 180 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--- 180 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---
Confidence 33444444455666777888899999999999999999985 554 457888899999999999999999988654
Q ss_pred CCChhHHH-HHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--Ccceee
Q 036160 488 TPTIKHFA-CMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM--ESNYVF 562 (601)
Q Consensus 488 ~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~ 562 (601)
.|+..... .....+.+.++.++|.+.+++ +...| +...+..++..+...|++++|+..++++++.+|++ ..++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 56644332 233446778888889988887 44556 78899999999999999999999999999999987 788999
Q ss_pred hhhhhhhcCChhhHHHHHHHHH
Q 036160 563 PSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 563 l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
++.++...|+.++|...+++..
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999988754
No 98
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=2.4e-09 Score=98.35 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHcCCC-----------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CC
Q 036160 389 MFVSTALVAMYAKCGSIDDAEAVFKGSA-----------LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE------GY 451 (601)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~ 451 (601)
..++..+..+|...|++++|.+.+++.. +....++..+...+...|++++|...++++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445556666666666666666655432 113456777888889999999999999888764 11
Q ss_pred CCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHh------CCCCC-hhHHHHHHHHHHhcCC------hHHHHHHhHhc
Q 036160 452 VPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIY------GITPT-IKHFACMIDILGRAGK------FTEIENFITET 517 (601)
Q Consensus 452 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~ 517 (601)
.|+ ..++..+...|...|++++|...++++.+.. ...+. ...+..+...+...+. +.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3478888899999999999999999887641 11233 3344444444443333 34445555554
Q ss_pred C-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 518 K-LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 518 ~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
. ..| ...++..++..|...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4 234 45688889999999999999999999998753
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=3.9e-09 Score=84.47 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=112.6
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-cHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP-NALVWENLLGACS 534 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 534 (601)
.+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|...+++. ...| +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788889999999999999999876 2345778888999999999999999999983 3334 6778888999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
..|++++|.+.++++++..|+++..+..++.++...|++++|..+++++.+..+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999999999999989999999999999999999999999877554
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=6.2e-10 Score=102.82 Aligned_cols=173 Identities=9% Similarity=-0.025 Sum_probs=137.1
Q ss_pred CHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHhhccCcHHHHHHHH
Q 036160 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE----GYVPD-EITFVVVLSACSHMGLIEEGKKHF 478 (601)
Q Consensus 404 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 478 (601)
++++|...|+. ....|...|++++|...|++..+. |-.++ ..+|..+..+|...|++++|+..+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47777776554 356788899999999999988763 21222 357889999999999999999999
Q ss_pred HHHHHHhCCCCC----hhHHHHHHHHHHhc-CChHHHHHHhHh-cCCCCc-------HHHHHHHHHHHHhcCChhHHHHH
Q 036160 479 SSIKKIYGITPT----IKHFACMIDILGRA-GKFTEIENFITE-TKLTPN-------ALVWENLLGACSWHGNIELDEKD 545 (601)
Q Consensus 479 ~~~~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~-~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~ 545 (601)
++..+...-..+ ..++..+..+|... |++++|+..+++ +.+.|+ ..++..++..+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988765311112 45788899999996 999999999997 333231 45788899999999999999999
Q ss_pred HHHHHhcCCCCCcc-------eeehhhhhhhcCChhhHHHHHHHHHhcC
Q 036160 546 AEKLLELEPKMESN-------YVFPSDISATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 546 ~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 587 (601)
++++++..|+++.. +..++.++...|++++|+..+++..+..
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999987653 5678889999999999999999776533
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=2.6e-10 Score=96.48 Aligned_cols=156 Identities=12% Similarity=-0.003 Sum_probs=98.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH-H
Q 036160 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI-L 501 (601)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 501 (601)
..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++.+.+. .|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 34445566666777777777666553 333 345666666667777777777777666543 2333222222211 1
Q ss_pred HhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CcceeehhhhhhhcCChhhHH
Q 036160 502 GRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM--ESNYVFPSDISATQGRWNDFS 577 (601)
Q Consensus 502 ~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 577 (601)
...+...+|+..+++ +...| +...+..++.++...|++++|+..++++++.+|+. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 122233345666665 33455 57777888888888888888888888888888764 447778888888888888888
Q ss_pred HHHHHHH
Q 036160 578 GVRALLS 584 (601)
Q Consensus 578 ~~~~~~~ 584 (601)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=1.8e-10 Score=90.94 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=76.8
Q ss_pred CCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHH
Q 036160 451 YVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWE 527 (601)
Q Consensus 451 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~ 527 (601)
+.|+. ..+......|.+.|++++|++.|++..+. .+.+...|..++.+|.+.|++++|++.+++ +.+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 35666667777777777777777777664 233466677777777777777777777776 33444 566777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhh
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 566 (601)
.++.++...|++++|++.++++++++|+++.++..++.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777777777776665555443
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=3.6e-10 Score=117.34 Aligned_cols=153 Identities=9% Similarity=0.004 Sum_probs=134.8
Q ss_pred HhCCChHHHHHHHHHHH--------HcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036160 431 VKHGLGEKALEAFRMML--------DEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~--------~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 501 (601)
...|++++|++.+++.. + ..|+ ...+..+..++...|++++|.+.++++.+. -+.+...|..++.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 77899999999999998 4 3454 457888889999999999999999999876 233478899999999
Q ss_pred HhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHH
Q 036160 502 GRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGV 579 (601)
Q Consensus 502 ~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 579 (601)
...|++++|++.|++ +...| +...+..++.++.+.|++++ ++.++++++++|+++.++..++.+|...|++++|+..
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998 45667 67899999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 036160 580 RALLSSQGI 588 (601)
Q Consensus 580 ~~~~~~~~~ 588 (601)
|++..+..+
T Consensus 557 ~~~al~l~P 565 (681)
T 2pzi_A 557 LDEVPPTSR 565 (681)
T ss_dssp HHTSCTTST
T ss_pred HHhhcccCc
Confidence 997655443
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=4.8e-10 Score=114.45 Aligned_cols=159 Identities=11% Similarity=0.029 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHH
Q 036160 402 CGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 402 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 477 (601)
.|++++|.+.+++.. +.+...|..+...+...|++++|.+.+++..+. .|+ ...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999998776 346778999999999999999999999999985 454 56888899999999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc---CChhHHHHHHHHHHhc
Q 036160 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWH---GNIELDEKDAEKLLEL 552 (601)
Q Consensus 478 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 552 (601)
+++..+. .+.+...+..++.+|.+.|++++|.+.+++ +...| +...+..++..+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999876 233477899999999999999999999998 44456 678889999999999 9999999999999999
Q ss_pred CCCCCcceeehh
Q 036160 553 EPKMESNYVFPS 564 (601)
Q Consensus 553 ~p~~~~~~~~l~ 564 (601)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998888777766
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.08 E-value=4.5e-10 Score=88.57 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=88.5
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeeh
Q 036160 487 ITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563 (601)
Q Consensus 487 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 563 (601)
+.|+ ...+...+..|.+.|++++|++.|++ +...| +...|..++.++.+.|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5566 56777888999999999999999988 44556 788889999999999999999999999999999999999999
Q ss_pred hhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 564 SDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 564 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+.+|...|++++|++.|++..+..|.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999988876553
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=6.3e-10 Score=96.93 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHcCCCC--C-CHhHHHH----------------HHHHHHhCCChHHHHHHHHHHHHcCC
Q 036160 391 VSTALVAMYAKCGSIDDAEAVFKGSAL--R-DTASWNM----------------MIGGYVKHGLGEKALEAFRMMLDEGY 451 (601)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~~~ 451 (601)
.+......+...|++++|...|++... | +...|.. +..++.+.|++++|+..|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 344455667789999999999987662 2 4556666 888899999999999999999985
Q ss_pred CCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC--hHHHHHHhHhcCCCCc--HHH
Q 036160 452 VPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGK--FTEIENFITETKLTPN--ALV 525 (601)
Q Consensus 452 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~--~~~ 525 (601)
.|+ ...+..+..++...|++++|...|+++.+. .|+ ...+..++.+|...|+ .+.+...+++.. .|+ ...
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a 159 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYA 159 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHH
Confidence 454 568888889999999999999999999876 454 7788888888876654 345566666643 343 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 526 WENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
+...+.++...|++++|+..+++++++.|+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 555677778889999999999999999995
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=4.1e-09 Score=91.69 Aligned_cols=161 Identities=11% Similarity=0.016 Sum_probs=111.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHH----------------HHHHhhccCcHHHHHHHHHHHHHHh
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVV----------------VLSACSHMGLIEEGKKHFSSIKKIY 485 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 485 (601)
+-.....+...|++++|+..|++..+. .|+. ..+.. +..+|.+.|++++|+..+++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 333445667788888888888888774 5544 35555 777788888888888888888765
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCcce
Q 036160 486 GITP-TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHG--NIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 486 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
.| +...+..++.++...|++++|+..|++ +.+.| +...+..++.++...| +.+.+...++++....| ....+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence 34 467788888888888888888888887 44556 6777888887776554 34555666666654333 22345
Q ss_pred eehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 561 VFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 561 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
..++.++...|++++|+..|++..+..|.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 56777778888888888888887765554
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=7.2e-09 Score=90.40 Aligned_cols=162 Identities=7% Similarity=-0.063 Sum_probs=129.9
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccC----cHHHHHHHHHHHHHHhCCCCChhH
Q 036160 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG----LIEEGKKHFSSIKKIYGITPTIKH 493 (601)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~ 493 (601)
.++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456677777777888889999999999888865 55667777777777 6 899999999888653 35667
Q ss_pred HHHHHHHHHh----cCChHHHHHHhHh-cCCCCc---HHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCccee
Q 036160 494 FACMIDILGR----AGKFTEIENFITE-TKLTPN---ALVWENLLGACSW----HGNIELDEKDAEKLLELEPKMESNYV 561 (601)
Q Consensus 494 ~~~l~~~~~~----~g~~~~A~~~~~~-~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 561 (601)
+..|...|.. .+++++|+.++++ ....|+ +..+..|...|.. .+|+++|+..++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888877 7899999999998 444453 7888888888888 78999999999999988 66778889
Q ss_pred ehhhhhhhc-C-----ChhhHHHHHHHHHhcCC
Q 036160 562 FPSDISATQ-G-----RWNDFSGVRALLSSQGI 588 (601)
Q Consensus 562 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 588 (601)
.|+.+|..- | +.++|..+|++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999988754 3 89999999998887764
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=6.1e-09 Score=106.30 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 036160 434 GLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIE 511 (601)
Q Consensus 434 ~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 511 (601)
|++++|++.+++..+. .|+ ...+..+...+...|++++|.+.+++..+. .|+ ...+..++.+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4566666666666553 333 345556666666666666666666666542 333 555666666666666666666
Q ss_pred HHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhc---CChhhHHHHHHHHHhc
Q 036160 512 NFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ---GRWNDFSGVRALLSSQ 586 (601)
Q Consensus 512 ~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 586 (601)
+.+++ +...| +...+..++.++...|++++|++.++++++.+|+++..+..++.++... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66665 23334 4556666666666666666666666666666666666666666666666 6666666666666554
Q ss_pred CCc
Q 036160 587 GIK 589 (601)
Q Consensus 587 ~~~ 589 (601)
++.
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 443
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=4.1e-09 Score=92.31 Aligned_cols=130 Identities=12% Similarity=-0.062 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 036160 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500 (601)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 500 (601)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|.+.+++..+. .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34566777888999999999999877 3678889999999999999999999999999876 23457788999999
Q ss_pred HHhcCChHHHHHHhHh-cCCCC-c----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 501 LGRAGKFTEIENFITE-TKLTP-N----------------ALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 501 ~~~~g~~~~A~~~~~~-~~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
|...|++++|.+.+++ +...| + ...+..++.++...|++++|...++++++..|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999998 33333 2 3788899999999999999999999999999965
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=3.5e-09 Score=98.55 Aligned_cols=218 Identities=8% Similarity=-0.047 Sum_probs=142.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 036160 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP-VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410 (601)
Q Consensus 332 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 410 (601)
.|++++|.+++++..+... .. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566777777776654311 10 122 45666666665543 345666777777777
Q ss_pred HHcCCC-------CC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HhhHHHHHHHhhccCcHHHHHH
Q 036160 411 VFKGSA-------LR--DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY---VPD--EITFVVVLSACSHMGLIEEGKK 476 (601)
Q Consensus 411 ~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~ 476 (601)
.|.+.. .+ -..+|+.+...|.+.|++++|+..|++..+.-. .|. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 665432 11 134677788888889999999999888765311 121 2467777888888 99999999
Q ss_pred HHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC---c----HHHHHHHHHHHHhcCChhHHHH
Q 036160 477 HFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITET-KLTP---N----ALVWENLLGACSWHGNIELDEK 544 (601)
Q Consensus 477 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~ 544 (601)
.+++..+...-..+ ..++..+..+|.+.|++++|++.+++. .+.| + ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99888765211111 457788889999999999999998872 2111 1 2356666677778899999999
Q ss_pred HHHHHHhcCCCCCcce-----eehhhhhhhcCChhhHHH
Q 036160 545 DAEKLLELEPKMESNY-----VFPSDISATQGRWNDFSG 578 (601)
Q Consensus 545 ~~~~~~~~~p~~~~~~-----~~l~~~~~~~g~~~~A~~ 578 (601)
.+++++ +.|+..... ..++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 888755432 2233333 5666666555
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.98 E-value=4e-10 Score=91.85 Aligned_cols=101 Identities=9% Similarity=-0.038 Sum_probs=62.6
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
.+..+...+...|++++|...|+.+... -+.+...|..++.+|...|++++|+..+++ +.+.| ++..+..++.++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555556666666777777666666654 122355666666666666666666666666 33344 4566666666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 535 WHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
..|++++|+..+++++++.|+++..
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 6666666666666666666655433
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=6.4e-09 Score=84.43 Aligned_cols=105 Identities=10% Similarity=-0.069 Sum_probs=89.6
Q ss_pred CCCCH-hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHH
Q 036160 451 YVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWE 527 (601)
Q Consensus 451 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~ 527 (601)
+.|+. ..+..+...+.+.|++++|...|+++.+. -+.+...|..++.+|...|++++|+..|++ +.+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 35544 36777888899999999999999999876 233478899999999999999999999998 44566 688999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
.++.++...|++++|+..+++++++.|+.+
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999653
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=1.8e-08 Score=84.96 Aligned_cols=155 Identities=12% Similarity=-0.019 Sum_probs=120.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-hhc
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA-CSH 467 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 467 (601)
+..+...+.+.|++++|...|++.. +.+...+..+...+...|++++|+..+++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 4456677888999999999999887 447778999999999999999999999998764 4544333222211 222
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc---HHHHHHHHHHHHhcCChhHH
Q 036160 468 MGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPN---ALVWENLLGACSWHGNIELD 542 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~---~~~~~~l~~~~~~~g~~~~A 542 (601)
.+...+|...+++..+. .|+ ...+..++.++...|++++|...+++ +...|+ ...+..++..+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22334578888888765 454 78889999999999999999999998 556664 55889999999999999999
Q ss_pred HHHHHHHHh
Q 036160 543 EKDAEKLLE 551 (601)
Q Consensus 543 ~~~~~~~~~ 551 (601)
...+++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=2.6e-09 Score=99.47 Aligned_cols=195 Identities=8% Similarity=0.004 Sum_probs=147.4
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 036160 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK-CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445 (601)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (601)
.|++++|.++++...+.... . +.+ .++++.|...|. .....|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~-----------~a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYA-----------KAAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHH
Confidence 56778888888877764221 1 111 467777777655 356778899999999999998
Q ss_pred HHHcCC---CC-C-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC--CC--hhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 446 MLDEGY---VP-D-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT--PT--IKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 446 m~~~~~---~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
..+... .+ . ..+|..+...|...|++++|...+++..+.+.-. |. ..++..+..+|.. |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 2378888889999999999999999887653111 11 4577888899988 999999999987
Q ss_pred -cCCCC-------cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc------ceeehhhhhhhcCChhhHHHHHHH
Q 036160 517 -TKLTP-------NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES------NYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 517 -~~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
+.+.| ...++..++..+...|++++|+..+++++++.|++.. .+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222 1467888999999999999999999999998776543 566677888889999999999998
Q ss_pred HH
Q 036160 583 LS 584 (601)
Q Consensus 583 ~~ 584 (601)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=3e-08 Score=87.49 Aligned_cols=164 Identities=12% Similarity=-0.025 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCC--CCC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh----hHHHH
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSA--LRD----TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI----TFVVV 461 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l 461 (601)
+..+...+.+.|++++|...|+++. .|+ ...+..+..++.+.|++++|+..|+++.+. .|+.. .+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHH
Confidence 3344555666677777777766544 121 235566667777777777777777777764 34332 23333
Q ss_pred HHHhh------------------ccCcHHHHHHHHHHHHHHhCCCCC-hhHH-----------------HHHHHHHHhcC
Q 036160 462 LSACS------------------HMGLIEEGKKHFSSIKKIYGITPT-IKHF-----------------ACMIDILGRAG 505 (601)
Q Consensus 462 ~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g 505 (601)
..++. ..|++++|...|+++.+. .|+ ...+ ..++..|.+.|
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333 356788888888887754 344 2222 34567889999
Q ss_pred ChHHHHHHhHh-cCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcce
Q 036160 506 KFTEIENFITE-TKLTPN----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 506 ~~~~A~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
++++|+..|++ +...|+ ...+..++.++.+.|++++|++.++.+....|++...+
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 99999999998 334453 35788899999999999999999999999999765543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=5.9e-08 Score=89.60 Aligned_cols=161 Identities=9% Similarity=-0.075 Sum_probs=122.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHh----hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHH
Q 036160 425 MMIGGYVKHGLGEKALEAFRMMLDEGY-VPDEI----TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFA 495 (601)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~ 495 (601)
..+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|+..++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887421 12211 2334666777888999999999998874222233 23688
Q ss_pred HHHHHHHhcCChHHHHHHhHhc--------CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------Ccce
Q 036160 496 CMIDILGRAGKFTEIENFITET--------KLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM------ESNY 560 (601)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 560 (601)
.++.+|...|++++|..++++. ...| ...++..++..|.+.|++++|+..+++++++.++. +..+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999998872 2122 23578899999999999999999999999876543 4567
Q ss_pred eehhhhhhhcCC-hhhHHHHHHHHHh
Q 036160 561 VFPSDISATQGR-WNDFSGVRALLSS 585 (601)
Q Consensus 561 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 585 (601)
..++.+|...|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 789999999995 6999999987753
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=2.9e-08 Score=86.77 Aligned_cols=133 Identities=8% Similarity=-0.072 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccC
Q 036160 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469 (601)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 469 (601)
..+..+...+...|++++|...|++...++...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3456678888999999999999999988899999999999999999999999999999863 345568889999999999
Q ss_pred cHHHHHHHHHHHHHHhCCC-------------CC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH
Q 036160 470 LIEEGKKHFSSIKKIYGIT-------------PT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPNA 523 (601)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~-------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~ 523 (601)
++++|.+.++...+...-. |+ ...+..++.++.+.|++++|.+.+++ +...|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999998752111 11 26788899999999999999999998 5667765
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=7.9e-09 Score=94.93 Aligned_cols=135 Identities=5% Similarity=-0.113 Sum_probs=115.0
Q ss_pred CC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcC-CCCcHHHHHHH
Q 036160 453 PD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITETK-LTPNALVWENL 529 (601)
Q Consensus 453 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 529 (601)
|+ ...+..+...+...|++++|...++++.+. .|+ ...+..++.++.+.|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 44 456777888899999999999999999876 454 7788999999999999999999999954 56765544333
Q ss_pred H-HHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 530 L-GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 530 ~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
. ..+...++.+.|+..++++++.+|+++..+..++.+|...|++++|...|+++.+..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 3 346788899999999999999999999999999999999999999999999998876654
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=9.8e-08 Score=87.08 Aligned_cols=225 Identities=11% Similarity=0.019 Sum_probs=106.0
Q ss_pred HhcCC-hhHHHHHHHHHHHcCCCCCHH-HHHHHHHhhcCCC--chhhHHHHHHHHHHhCCCCchhHHHHHHHHH----Hh
Q 036160 330 AQAGE-AEMALKCFRKMRLEGIKSNEF-TLASCLNGCSPVA--TLANGRLLHSIAVKTGHLLDMFVSTALVAMY----AK 401 (601)
Q Consensus 330 ~~~g~-~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 401 (601)
.+.|. .++|+.++++++.. .|+.. .++.--..+...+ +++++...++.+.....+ +..+|+.-..++ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 34444 46888888888775 44433 3444444444555 667777777666665432 222333222222 22
Q ss_pred c---CCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCc---
Q 036160 402 C---GSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGE--KALEAFRMMLDEGYVPDEITFVVVLSACSHMGL--- 470 (601)
Q Consensus 402 ~---~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--- 470 (601)
. ++++++.++++++. +.+..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+...++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 2 44555555554433 334445544444444555544 5555555555532 2233344443333334343
Q ss_pred ---HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH-HHHHhHhcC-C----CCcHHHHHHHHHHHHhcCChhH
Q 036160 471 ---IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE-IENFITETK-L----TPNALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 471 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~ 541 (601)
++++++.++.++.. .+-|...|+.+...+.+.|+..+ +.++..++- . ..++..+..++..+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 45555555555443 12234445445555555554332 223333311 1 1134444555555555555555
Q ss_pred HHHHHHHHHh-cCCCCCcce
Q 036160 542 DEKDAEKLLE-LEPKMESNY 560 (601)
Q Consensus 542 A~~~~~~~~~-~~p~~~~~~ 560 (601)
|.++++.+.+ .+|-....|
T Consensus 277 A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHhccChHHHHHH
Confidence 5555555553 455443333
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=7.3e-07 Score=88.17 Aligned_cols=368 Identities=10% Similarity=-0.034 Sum_probs=202.9
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCC-ccHHH
Q 036160 130 QG-CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR-VSYGS 207 (601)
Q Consensus 130 ~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~ 207 (601)
.| +++.|..+|+.+... -|. ++.+.+..+|+..+.. .|+...|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366777777776653 233 7777788888777764 4677777777766666553 34445
Q ss_pred HHHhhcCC------CCcccHHHHHHHHhc----CCCchhHHHHHHHHHHCCCCCCH-hhHHHHHHHhcCCCChhHHHHHH
Q 036160 208 RVFEAIAH------QDSVSWNALFSRFQD----YESPDQGLRIFYQMLLKGFKPNM-CTFIVILKACSSLSDVGFGKQLH 276 (601)
Q Consensus 208 ~~~~~~~~------~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 276 (601)
.+|+.... .+...|...+..+.. .++.+.+..+|++...... .+. ..|..... +....+...+..++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 55554332 233445555554432 2445566666666665211 111 11111111 11111111111111
Q ss_pred HHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCC----CCcccHHHHHHHHHhcC--C-----hhHHHHHHHHH
Q 036160 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN----KDLFAYTAIITSYAQAG--E-----AEMALKCFRKM 345 (601)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g--~-----~~~a~~~~~~m 345 (601)
.+.. +.+..|..+++.+.. .+...|...+.--...+ - .+++..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1110 112222222222111 12234444433322211 0 34566788887
Q ss_pred HHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHcCC---------
Q 036160 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGS--------- 415 (601)
Q Consensus 346 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~--------- 415 (601)
.... +-+...|...+.-+.+.|+.+.|..+++..... +.+...+.. |....+.++. ..+.+..
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC--------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhh
Confidence 7653 344666666666677788899999999988887 334333322 2221111111 1111111
Q ss_pred -C--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhh-ccCcHHHHHHHHHHHHHHhCCCCCh
Q 036160 416 -A--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS-HMGLIEEGKKHFSSIKKIYGITPTI 491 (601)
Q Consensus 416 -~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~ 491 (601)
. ......|...+....+.++.+.|..+|+++ ... ..+...|......-. ..++.+.|..+|+...+.++ -++
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~ 354 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DST 354 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCH
Confidence 0 112345777777777788899999999999 321 223334432222212 23469999999999988732 234
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 492 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
..+...++...+.|+.+.|..+|++.. .....|...+..-...|+.+.+..++++..+
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556677888889999999999999973 3677888888878889999999999999885
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=2.5e-09 Score=90.50 Aligned_cols=126 Identities=9% Similarity=0.076 Sum_probs=91.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCCh-
Q 036160 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI-LGRAGKF- 507 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 507 (601)
+...|++++|+..+++..+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 445678888888888887752 334567778888888888888888888888765 13346677777777 6778887
Q ss_pred -HHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 508 -TEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 508 -~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
++|...+++ +...| +...+..++..+...|++++|+..++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 888888887 33455 5677888888888888888888888888888887643
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.89 E-value=1.1e-08 Score=85.45 Aligned_cols=126 Identities=9% Similarity=-0.030 Sum_probs=84.4
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
.+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|...+++ +...| +...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455555666677777777777766654 223456666677777777777777777766 33334 5667777777777
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcceeehhhh--hhhcCChhhHHHHHHHHH
Q 036160 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDI--SATQGRWNDFSGVRALLS 584 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 584 (601)
..|++++|...++++++..|+++..+..++.+ +...|++++|...++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77888888888888887777776666444433 666778888877777654
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.87 E-value=3.1e-09 Score=86.01 Aligned_cols=101 Identities=8% Similarity=-0.018 Sum_probs=63.3
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
.+..+...+.+.|++++|...|+.+... -+.+...|..++.+|.+.|++++|+..+++ +...| ++..+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445555666667777777777666654 122355666666666777777777777666 33344 4556666666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 535 WHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
..|++++|+..+++++++.|+++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcch
Confidence 7777777777777777766655544
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.86 E-value=7.1e-09 Score=97.58 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
...|..++.+|.+.|++++|+..+++ +.+.| +...+..++.++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 36778888888999999999999887 44455 67888889999999999999999999999999999999999999999
Q ss_pred hcCChhhH-HHHHHHH
Q 036160 569 TQGRWNDF-SGVRALL 583 (601)
Q Consensus 569 ~~g~~~~A-~~~~~~~ 583 (601)
..|++++| ...++.|
T Consensus 276 ~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 276 RIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999988 4455555
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=3.9e-09 Score=85.93 Aligned_cols=102 Identities=8% Similarity=0.008 Sum_probs=82.7
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeeh
Q 036160 487 ITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563 (601)
Q Consensus 487 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 563 (601)
+.|+ ...+..++..+.+.|++++|...|++ +...| +...|..++.++...|++++|+..++++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 3454 55677778888888888888888887 33455 777888888888888888888888888888888888888888
Q ss_pred hhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 564 SDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 564 ~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
+.+|...|++++|+..|++..+..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 8888888888888888888876544
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=1.6e-08 Score=80.35 Aligned_cols=116 Identities=10% Similarity=-0.015 Sum_probs=87.4
Q ss_pred hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHH
Q 036160 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGAC 533 (601)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~ 533 (601)
..+..+...+...|++++|...+++.... .+.+...+..++.++...|++++|...+++ +...| +...+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35666666777777888888887777665 233466777777788888888888888776 33344 567778888888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCCh
Q 036160 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRW 573 (601)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 573 (601)
...|++++|...++++++..|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888877765
No 128
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.82 E-value=4.3e-09 Score=82.22 Aligned_cols=96 Identities=9% Similarity=-0.108 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhc
Q 036160 493 HFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 570 (601)
.+..++..+.+.|++++|+..+++ +...| +...|..++.++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 345566777788888888888887 34455 6777888888888888888888888888888888888888888888888
Q ss_pred CChhhHHHHHHHHHhcCC
Q 036160 571 GRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 571 g~~~~A~~~~~~~~~~~~ 588 (601)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 888888888887766444
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=4.5e-09 Score=96.19 Aligned_cols=189 Identities=12% Similarity=0.004 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 036160 389 MFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSA 464 (601)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 464 (601)
...+..+...+.+.|++++|...|++.. +.+...|..+..++.+.|++++|+..+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4455666677777888888888777554 346777888888888888888888888888774 444 4577778888
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHH
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 543 (601)
+...|++++|...|++..+. .|+ ...+...+....+..+...... .......++..+...+... ..|++++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 88888888888888887664 222 1111111211111111111111 2222333444444444332 368888888
Q ss_pred HHHHHHHhcCCCCCcceeehhhhhhhc-CChhhHHHHHHHHHh
Q 036160 544 KDAEKLLELEPKMESNYVFPSDISATQ-GRWNDFSGVRALLSS 585 (601)
Q Consensus 544 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 585 (601)
+.++++++.+|++......+...+... +++++|.++|++..+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888888887776666676666665 778888888887764
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.80 E-value=5.1e-09 Score=82.67 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=45.8
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc--------HHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTPN--------ALVW 526 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~--------~~~~ 526 (601)
.+..+...+.+.|++++|++.|++..+. .|+ ...|..++.+|.+.|++++|++.+++ +.+.|+ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3444455555555555555555555443 222 44455555555555555555555544 221121 1234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036160 527 ENLLGACSWHGNIELDEKDAEKLLELEP 554 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p 554 (601)
..++.++...|++++|++.++++++..|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 4444455555555555555555555444
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=4.8e-09 Score=93.22 Aligned_cols=184 Identities=7% Similarity=-0.040 Sum_probs=113.5
Q ss_pred hcCCHHHHHHHHcCCC---CCCHhHHHHH-------HHHHHhCCChHHHHHHHHHHHHcCCCCCHh--------------
Q 036160 401 KCGSIDDAEAVFKGSA---LRDTASWNMM-------IGGYVKHGLGEKALEAFRMMLDEGYVPDEI-------------- 456 (601)
Q Consensus 401 ~~~~~~~A~~~~~~~~---~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------------- 456 (601)
..++...|.+.|.+.. +.....|..+ ...+...++..+++..+++-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 3566666666665544 3345556655 3444444445555554444433 233221
Q ss_pred --------hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCc----HH
Q 036160 457 --------TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN----AL 524 (601)
Q Consensus 457 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~ 524 (601)
....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|++....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455667778888888887766532 35433555666677788888888888876442332 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC--CC-CCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 525 VWENLLGACSWHGNIELDEKDAEKLLELE--PK-MESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
.+..++.++...|++++|+..++++..-. |. .+.....++.++.++|+.++|..+|+++.+..+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66777777888888888888888877432 33 3346677777888888888888888887776554
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=3.9e-08 Score=90.84 Aligned_cols=161 Identities=9% Similarity=-0.087 Sum_probs=108.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hh
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE------ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IK 492 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 492 (601)
+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445666777888888888887777642 1121 12333445566778888888888877643111111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHhc----CCCCc-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------C
Q 036160 493 HFACMIDILGRAGKFTEIENFITET----KLTPN-----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKM------E 557 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~ 557 (601)
+++.++..|...|++++|..++++. ...|+ ..++..++..|...|++++|+..+++++++.++. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777888888888888888888762 11222 2577888888888888888888888888765421 4
Q ss_pred cceeehhhhhhhcCChhhH-HHHHHHHH
Q 036160 558 SNYVFPSDISATQGRWNDF-SGVRALLS 584 (601)
Q Consensus 558 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 584 (601)
.++..++.+|...|++++| ..++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4566788888888888888 77676654
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.80 E-value=1.1e-08 Score=78.66 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCcceeehhhh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPK--MESNYVFPSDI 566 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 566 (601)
...+..++..+.+.|++++|...+++ +...| +...+..++..+...|++++|+..++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 45566677777777777777777776 23334 5667777788888888888888888888888887 77788888888
Q ss_pred hhhc-CChhhHHHHHHHHHhcCCcC
Q 036160 567 SATQ-GRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 567 ~~~~-g~~~~A~~~~~~~~~~~~~~ 590 (601)
+... |++++|.+++++..+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 8888 88888888888777655543
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=6.8e-09 Score=82.05 Aligned_cols=95 Identities=7% Similarity=-0.066 Sum_probs=45.9
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
.+..+...+.+.|++++|...|++..+. .+.+...|..++.++.+.|++++|+..+++ +.+.| +...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444444455555555555555555443 122244445555555555555555555544 22233 3444455555555
Q ss_pred hcCChhHHHHHHHHHHhcC
Q 036160 535 WHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~ 553 (601)
..|++++|+..++++++++
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 5555555555555555555
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=1.4e-08 Score=81.02 Aligned_cols=113 Identities=13% Similarity=0.008 Sum_probs=70.2
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
.+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|...+++ +...| +...+..++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4555555556666666666666655432 122345555666666666666666666665 22233 4566667777777
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC
Q 036160 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 571 (601)
..|++++|++.++++++..|++...+..++.++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777777777777766666555
No 136
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=3.7e-07 Score=79.42 Aligned_cols=172 Identities=8% Similarity=-0.049 Sum_probs=134.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-CCCHhHHHHHHHHHHhCC----ChHHHHHHHHHHH
Q 036160 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-LRDTASWNMMIGGYVKHG----LGEKALEAFRMML 447 (601)
Q Consensus 373 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~ 447 (601)
|.+.|....+.| ++..+..|...|...+++++|..+|++.. ..++..+..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 56667778888888889999988887655 3467777778887777 6 8999999999998
Q ss_pred HcCCCCCHhhHHHHHHHhhc----cCcHHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHhHh
Q 036160 448 DEGYVPDEITFVVVLSACSH----MGLIEEGKKHFSSIKKIYGITPT---IKHFACMIDILGR----AGKFTEIENFITE 516 (601)
Q Consensus 448 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 516 (601)
+.| +...+..|...|.. .+++++|.+.|++..+. .|+ +..+..|..+|.. .+++++|..+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 56677778888877 78999999999988653 443 6788889999988 8899999999998
Q ss_pred c-CCCCcHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 036160 517 T-KLTPNALVWENLLGACSWH-G-----NIELDEKDAEKLLELEP 554 (601)
Q Consensus 517 ~-~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 554 (601)
. ...++...+..+...|... | |.++|+..++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4 3335677888888888754 3 89999999999998755
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=3.6e-08 Score=77.43 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=81.5
Q ss_pred hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC-cHHHHHHHHHHH
Q 036160 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP-NALVWENLLGAC 533 (601)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 533 (601)
..+..+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|...+++. ...| +...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666666777777777777777777665 2234566777777777778888877777763 2233 566777788888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcC
Q 036160 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571 (601)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 571 (601)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888887777777776665543
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=4.2e-06 Score=82.76 Aligned_cols=100 Identities=7% Similarity=-0.008 Sum_probs=52.9
Q ss_pred hCC-ChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC-hhHH
Q 036160 28 ESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL-ADNA 105 (601)
Q Consensus 28 ~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A 105 (601)
+.| ++..|..+|+.+... -|. |+++.+..+|+..+.. .|++..|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 366777777776653 233 6777777777777662 3577777776665555442 2334
Q ss_pred HHHHhcCCC------CCccchHHHHHHHH----hcCChhHHHHHHHHHHH
Q 036160 106 LKVFYRIKD------PDVVAWGAIITCLD----QQGCCQEAAKIFNLMRE 145 (601)
Q Consensus 106 ~~~~~~~~~------~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~ 145 (601)
..+|+.... .+...|...+..+. .+++.+.+.++|++...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 444443321 23345555554432 23456666777776665
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.76 E-value=1.1e-08 Score=85.25 Aligned_cols=108 Identities=12% Similarity=-0.006 Sum_probs=93.6
Q ss_pred HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHH
Q 036160 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGA 532 (601)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~ 532 (601)
...+..+...+...|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..+++ +.+.| +...|..++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 357788888999999999999999999876 233578899999999999999999999998 44566 68899999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcceeehh
Q 036160 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564 (601)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 564 (601)
+...|++++|+..+++++++.|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999888665544
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=3.2e-06 Score=77.13 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=176.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHH
Q 036160 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG--SIDDAEAVF 412 (601)
Q Consensus 335 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~ 412 (601)
+.+++..+......|. ..++|...++.+...+. -...+++.--.++...+ +++++++++
T Consensus 32 y~~~~~~~~a~~~~~e------------------~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~ 92 (306)
T 3dra_A 32 YKQIMGLLLALMKAEE------------------YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWC 92 (306)
T ss_dssp HHHHHHHHHHHHHTTC------------------CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC------------------CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 4566666666665542 23567777777777652 24556677777777888 999999999
Q ss_pred cCCC---CCCHhHHHHHHHHH----HhC---CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHH--HHHHHHHH
Q 036160 413 KGSA---LRDTASWNMMIGGY----VKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE--EGKKHFSS 480 (601)
Q Consensus 413 ~~~~---~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~ 480 (601)
+.+. +.+..+|+.-...+ ... +++++++.+++++.+.. +-|...|+.-...+.+.|.++ ++++.+++
T Consensus 93 ~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 93 EEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 8766 44666777655555 555 78999999999999862 345568887777778888888 99999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCC------hHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 036160 481 IKKIYGITPTIKHFACMIDILGRAGK------FTEIENFITE-TKLTP-NALVWENLLGACSWHGN-IELDEKDAEKLLE 551 (601)
Q Consensus 481 ~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 551 (601)
+.+. -+-|...|+.-..++.+.|+ ++++++.+++ +...| |...|+.+...+.+.|+ .+....+.+++++
T Consensus 172 ~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 172 VIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 9986 24456777777777777776 8999999987 45566 88999999999998887 4556778888888
Q ss_pred cC---CCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 552 LE---PKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 552 ~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
++ |.++.++..++.+|...|+.++|.++++.+.+
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 76 88888999999999999999999999999975
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=4.4e-07 Score=83.66 Aligned_cols=162 Identities=10% Similarity=-0.036 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHcCCC---CCCH------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--Hh
Q 036160 391 VSTALVAMYAKCGSIDDAEAVFKGSA---LRDT------ASWNMMIGGYVKHGLGEKALEAFRMMLDEGY---VPD--EI 456 (601)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~ 456 (601)
.+...+..+...|++++|.+.+++.. +... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44456777888999999988886432 1111 2234456677888999999999999886321 122 24
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-------cH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-----IKHFACMIDILGRAGKFTEIENFITE-TKLTP-------NA 523 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-------~~ 523 (601)
+++.+...|...|++++|...++++.+.....|+ ..++..++.+|.+.|++++|+..+++ +.+.+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998743222233 25888899999999999999999987 22112 26
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHHhc
Q 036160 524 LVWENLLGACSWHGNIELD-EKDAEKLLEL 552 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 552 (601)
.++..++.++.+.|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999 8889998864
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=4.9e-08 Score=82.41 Aligned_cols=124 Identities=8% Similarity=0.010 Sum_probs=96.4
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHH-HHhcCCh--
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGA-CSWHGNI-- 539 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~-~~~~g~~-- 539 (601)
+...|++++|...++...+. .+.+...+..++.+|...|++++|...+++ +...| +...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888888765 234467888888888999999999998887 33444 67777888888 7788888
Q ss_pred hHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
++|+..++++++..|+++..+..++.+|...|++++|...+++..+..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 899999999999999888888889999999999999999998888766644
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=1.3e-06 Score=80.42 Aligned_cols=159 Identities=11% Similarity=-0.047 Sum_probs=120.3
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCC---CCH------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCH----hhHHH
Q 036160 395 LVAMYAKCGSIDDAEAVFKGSAL---RDT------ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDE----ITFVV 460 (601)
Q Consensus 395 l~~~~~~~~~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~----~~~~~ 460 (601)
.+..+...|++++|...+++... .+. ..+..+...+...+++++|+..+++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999876432 111 12334666777788999999999999984322 222 26888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhC----CCCC-hhHHHHHHHHHHhcCChHHHHHHhHhc-C------CCC-cHHHHH
Q 036160 461 VLSACSHMGLIEEGKKHFSSIKKIYG----ITPT-IKHFACMIDILGRAGKFTEIENFITET-K------LTP-NALVWE 527 (601)
Q Consensus 461 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~~~~~ 527 (601)
+..+|...|++++|...++++.+... ..+. ..++..++.+|.+.|++++|..++++. . ..+ -..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999875321 1122 347888999999999999999998872 1 122 267899
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHhcC
Q 036160 528 NLLGACSWHGN-IELDEKDAEKLLELE 553 (601)
Q Consensus 528 ~l~~~~~~~g~-~~~A~~~~~~~~~~~ 553 (601)
.++.++.+.|+ +++|.+.+++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999995 699999999999753
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.70 E-value=4e-08 Score=79.41 Aligned_cols=98 Identities=9% Similarity=-0.029 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
...+..++..+.+.|++++|...|++ +...| +...|..++.++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44555667777777888888877776 33445 66777777777777788888888888888888877777777888888
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 036160 569 TQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 569 ~~g~~~~A~~~~~~~~~~~~ 588 (601)
..|++++|...|++..+..+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 88888888877777765443
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.70 E-value=4.1e-08 Score=78.76 Aligned_cols=101 Identities=4% Similarity=-0.198 Sum_probs=70.2
Q ss_pred CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHH
Q 036160 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLG 531 (601)
Q Consensus 454 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~ 531 (601)
+...+..+...+...|++++|...|+...+. .+.+...+..++.++...|++++|...+++ +...| +...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4456667777777777777777777777665 123356677777777777777777777776 33344 5667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 532 ACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
++...|++++|+..+++++++.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhH
Confidence 7777777777777777777777753
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=1.9e-07 Score=77.61 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=78.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 497 (601)
+...|..+...+.+.|++++|+..|++..+. .| +...|..+..+|...|++++|+..+++..+. .+.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4567778888888899999999999888885 44 5567888888888899999999998888875 23337788888
Q ss_pred HHHHHhcCChHHHHHHhHh-cCCCC
Q 036160 498 IDILGRAGKFTEIENFITE-TKLTP 521 (601)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~-~~~~p 521 (601)
..+|...|++++|...|++ +.+.|
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8888899999999988887 33445
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=4.7e-08 Score=77.88 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=90.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhh
Q 036160 490 TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567 (601)
Q Consensus 490 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 567 (601)
+...+..++..+.+.|++++|...+++ +...| +...+..++..+...|++++|+..++++++..|+++..+..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 366788899999999999999999998 45566 7889999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHHhcCCc
Q 036160 568 ATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 568 ~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
...|++++|.+++++..+..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhhHHHHHHHHHHHHHhCCC
Confidence 9999999999999998876553
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=5.1e-08 Score=76.91 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhh
Q 036160 492 KHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569 (601)
Q Consensus 492 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 569 (601)
..+..++..+.+.|++++|+..|++ +...| +...|..++.++.+.|++++|+..++++++++|+++.++..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4455666677777777777777776 33344 566777777777777777777777777777777777777777777777
Q ss_pred cCChhhHHHHHHHHHhcC
Q 036160 570 QGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 570 ~g~~~~A~~~~~~~~~~~ 587 (601)
.|++++|...+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 777777777777666543
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.68 E-value=5.6e-08 Score=83.80 Aligned_cols=166 Identities=10% Similarity=-0.004 Sum_probs=99.1
Q ss_pred hcCCHHHHHHHHcCCCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHH
Q 036160 401 KCGSIDDAEAVFKGSALR---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 401 ~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 477 (601)
..|.++++.+.++.-... ....+..+...+...|++++|+..|++..+. .|+...+... ....-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~-- 83 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK-- 83 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH--
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH--
Confidence 344555555554432211 2334555566666667777777777666653 2222111000 000000
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 478 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
.. .....+..++.+|.+.|++++|+..+++ +...| +...+..++.++...|++++|+..+++++++.|+
T Consensus 84 -~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 84 -KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp -HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred -HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 00 0125677788888899999999998887 33445 6788888999999999999999999999999999
Q ss_pred CCcceeehhhhhhhcCChhhHH-HHHHHHHhcC
Q 036160 556 MESNYVFPSDISATQGRWNDFS-GVRALLSSQG 587 (601)
Q Consensus 556 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 587 (601)
++.++..++.++...|+.+++. ..+..+-..+
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998888888 5555554433
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=1.2e-07 Score=73.48 Aligned_cols=107 Identities=11% Similarity=0.051 Sum_probs=63.6
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
.+..+...+...|++++|...++..... .+.+...+..++.++...|++++|...+++ +...| +...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4445555556666666666666666554 122355556666666666666666666665 22333 4556666666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcceeehhh
Q 036160 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSD 565 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 565 (601)
..|++++|...++++++..|+++..+..++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7777777777777777777766555444443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=5.6e-08 Score=75.42 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
...+..++..+...|++++|...+++ +...| +...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677888999999999999999998 33445 78889999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCc
Q 036160 569 TQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 569 ~~g~~~~A~~~~~~~~~~~~~ 589 (601)
..|++++|...+++..+..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT
T ss_pred HHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999998876553
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=1.9e-07 Score=80.78 Aligned_cols=155 Identities=10% Similarity=0.016 Sum_probs=86.5
Q ss_pred HhcCCHHHHHH---HHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHhhccCcH
Q 036160 400 AKCGSIDDAEA---VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE----GYVPD-EITFVVVLSACSHMGLI 471 (601)
Q Consensus 400 ~~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~ 471 (601)
...|++++|.+ ++..........+..+...+...|++++|...+++..+. +..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34567777777 554433334556666677777777777777777666551 11121 13455566666677777
Q ss_pred HHHHHHHHHHHHHhCCCC-C----hhHHHHHHHHHHhcCChHHHHHHhHhc-C-----CCCc--HHHHHHHHHHHHhcCC
Q 036160 472 EEGKKHFSSIKKIYGITP-T----IKHFACMIDILGRAGKFTEIENFITET-K-----LTPN--ALVWENLLGACSWHGN 538 (601)
Q Consensus 472 ~~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~--~~~~~~l~~~~~~~g~ 538 (601)
++|.+.+++..+...-.+ + ...+..+...+...|++++|...+++. . -.|. ..++..++..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 777777766554321112 1 234556666666677777776666651 1 0111 2234556666666677
Q ss_pred hhHHHHHHHHHHhcCC
Q 036160 539 IELDEKDAEKLLELEP 554 (601)
Q Consensus 539 ~~~A~~~~~~~~~~~p 554 (601)
+++|...+++++++..
T Consensus 163 ~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766665444
No 153
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=7.9e-07 Score=73.85 Aligned_cols=131 Identities=11% Similarity=-0.010 Sum_probs=103.8
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3456777888889999999999999988852 335668888888999999999999999998876 2345778889999
Q ss_pred HHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHH--HHHHhcCChhHHHHHHHHHHhcC
Q 036160 500 ILGRAGKFTEIENFITE-TKLTP-NALVWENLL--GACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
++...|++++|...+++ +...| +...+..+. ..+...|++++|...+++..+..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 99999999999999988 33445 555554444 44778899999999999887653
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.3e-07 Score=76.83 Aligned_cols=111 Identities=11% Similarity=-0.014 Sum_probs=79.3
Q ss_pred CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHH
Q 036160 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWE 527 (601)
Q Consensus 454 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~ 527 (601)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|++++|+..+++ +...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344666777777788888888888887764 3555 56677777778888888888888776 33344 566777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhh
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 567 (601)
.++.++...|++++|...++++++..|+++..+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777888888888888888888888887665555554443
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.63 E-value=4.4e-08 Score=78.31 Aligned_cols=108 Identities=12% Similarity=0.024 Sum_probs=65.7
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-----Ch-----hHHHHHHHHHHhcCChHHHHHHhHh-cCC------
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-----TI-----KHFACMIDILGRAGKFTEIENFITE-TKL------ 519 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~-----~~~~~l~~~~~~~g~~~~A~~~~~~-~~~------ 519 (601)
.+......+.+.|++++|+..|++..+...-.| +. ..|..+..++.+.|++++|+..+++ +.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 345555667778888888888888776521111 11 1566666666666666666666655 333
Q ss_pred -CC-cHHHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehh
Q 036160 520 -TP-NALVW----ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564 (601)
Q Consensus 520 -~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 564 (601)
.| +...| ...+.++...|++++|+..|++++++.|++.....-+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 55 34455 66666666666666666666666666666655554443
No 156
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.61 E-value=8e-08 Score=90.37 Aligned_cols=152 Identities=10% Similarity=0.005 Sum_probs=85.9
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
...+..+...+.+.|++++|+..|++.... .|+... +...++++++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 445667777788888899999988888774 455432 234445554443221 136788999
Q ss_pred HHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh-hcCChhhH
Q 036160 500 ILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA-TQGRWNDF 576 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 576 (601)
+|.+.|++++|+..+++ +.+.| +...|..++.+|...|++++|+..++++++++|+++.++..++.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 44556 78899999999999999999999999999999999999999998844 56788889
Q ss_pred HHHHHHHHhcCCcCC
Q 036160 577 SGVRALLSSQGIKKE 591 (601)
Q Consensus 577 ~~~~~~~~~~~~~~~ 591 (601)
..+|.+|.+..+...
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999998876555443
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.7e-07 Score=74.96 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=54.0
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD----EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 494 (601)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...|++++|...++...+. .+.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4445555566666666666666666666553 444 344555555566666666666666665544 12234555
Q ss_pred HHHHHHHHhcCChHHHHHHhHh
Q 036160 495 ACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
..++.++...|++++|...+++
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666666666666666665
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=2.1e-07 Score=85.10 Aligned_cols=157 Identities=5% Similarity=-0.085 Sum_probs=93.0
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFAC 496 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 496 (601)
+...+..+...+.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|...+++..+ +.|+ ...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3455666777777777777777777777764 34 445666777777777777777777776654 3444 566777
Q ss_pred HHHHHHhcCChHHHHHHhHh-cCCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChh
Q 036160 497 MIDILGRAGKFTEIENFITE-TKLTPNA-LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 574 (601)
++.+|...|++++|...+++ +...|+. ..+...+....+.. .+...........|.++.....++.++ .|+++
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKKRWNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 77777777777777777776 3333321 11111222222111 222222233345555655555555543 67888
Q ss_pred hHHHHHHHHHh
Q 036160 575 DFSGVRALLSS 585 (601)
Q Consensus 575 ~A~~~~~~~~~ 585 (601)
+|++.++...+
T Consensus 153 ~A~~~~~~al~ 163 (281)
T 2c2l_A 153 RELEECQRNHE 163 (281)
T ss_dssp HHHTTTSGGGT
T ss_pred HHHHHHHhhhc
Confidence 88777765543
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=2.7e-07 Score=71.90 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=75.7
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACS 534 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~ 534 (601)
.+..+...+.+.|++++|...+++..+. -+.+...|..++.++.+.|++++|+..+++ +.+.| +...+..++.++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666778889999999999888875 233477888888889999999999999887 44566 6778888889999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCC
Q 036160 535 WHGNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p~~~ 557 (601)
..|++++|+..++++++.+|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999988654
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.58 E-value=1e-07 Score=94.19 Aligned_cols=118 Identities=10% Similarity=0.011 Sum_probs=88.1
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcC
Q 036160 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHG 537 (601)
Q Consensus 461 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g 537 (601)
+...+.+.|++++|.+.+++..+. .|+ ...+..++.+|.+.|++++|++.+++ +.+.| +...+..++.++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334566778888888888887765 343 67778888888888888888888877 34555 5678888888888888
Q ss_pred ChhHHHHHHHHHHhcCCCCCcceeehhhh--hhhcCChhhHHHHHH
Q 036160 538 NIELDEKDAEKLLELEPKMESNYVFPSDI--SATQGRWNDFSGVRA 581 (601)
Q Consensus 538 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 581 (601)
++++|++.++++++..|+++..+..++.+ +...|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888888888888888777 777888888888877
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=1.8e-07 Score=75.02 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhh
Q 036160 490 TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567 (601)
Q Consensus 490 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 567 (601)
+...+..++..+...|++++|...+++ +...| +...+..++.++...|++++|+..++++++..|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 345566666666666666666666665 23334 4556666666666666666666666666666666666666666666
Q ss_pred hhcCChhhHHHHHHHHHhcC
Q 036160 568 ATQGRWNDFSGVRALLSSQG 587 (601)
Q Consensus 568 ~~~g~~~~A~~~~~~~~~~~ 587 (601)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666665433
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=9.1e-08 Score=75.78 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=70.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-h---hHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-c---HHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-I---KHFACMIDILGRAGKFTEIENFITE-TKLTP-N---ALVWEN 528 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~---~~~~~~ 528 (601)
+..+...+...|++++|...++.+.+. .|+ . ..+..++.++.+.|++++|...+++ +...| + ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 344556677788888888888887765 233 2 4666777788888888888888877 33344 3 566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 529 LLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
++.++...|++++|+..++++++..|+++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 7777888888888888888888888866543
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=4.4e-07 Score=80.67 Aligned_cols=137 Identities=14% Similarity=-0.078 Sum_probs=101.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHH
Q 036160 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDI 500 (601)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 500 (601)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 445667788889999999998887764 465545555556788899999999999755321 0111 2367778899
Q ss_pred HHhcCChHHHHHHhHhcC---CCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehh
Q 036160 501 LGRAGKFTEIENFITETK---LTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564 (601)
Q Consensus 501 ~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 564 (601)
+.+.|++++|++.|++.. ..| ........+.++.+.|+.++|...++++.+.+|+ +.+...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999842 114 3456777888899999999999999999999996 55544443
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=1.1e-06 Score=75.94 Aligned_cols=152 Identities=11% Similarity=0.064 Sum_probs=82.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hhHHHHHHHHHHhcCCh
Q 036160 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY---GITPT-IKHFACMIDILGRAGKF 507 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~ 507 (601)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..|. ...+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443321 11123355666666666677777766666655421 11222 34566666666667777
Q ss_pred HHHHHHhHhc-CC---CC-c----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------cceeehhhhhhhcCC
Q 036160 508 TEIENFITET-KL---TP-N----ALVWENLLGACSWHGNIELDEKDAEKLLELEPKME------SNYVFPSDISATQGR 572 (601)
Q Consensus 508 ~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~ 572 (601)
++|.+.+++. .. .+ + ...+..++..+...|++++|+..++++++..+... ..+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666651 11 11 1 23455666666666777777777766665432211 123566666667777
Q ss_pred hhhHHHHHHHHH
Q 036160 573 WNDFSGVRALLS 584 (601)
Q Consensus 573 ~~~A~~~~~~~~ 584 (601)
+++|..++++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666554
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.56 E-value=2.7e-07 Score=90.81 Aligned_cols=142 Identities=16% Similarity=0.055 Sum_probs=95.3
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
...|..+...+.+.|++++|+..|++..+. .|+...+ . .+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~----~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA----SES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH----HHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH----HHH-----HHHHHHHHHHH
Confidence 445666666777777777777777776663 2322110 0 000000 000 01356778888
Q ss_pred HHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHH
Q 036160 500 ILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 577 (601)
+|.+.|++++|+..+++ +.+.| +...|..++.+|...|++++|+..++++++++|++..++..++.++...|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899988888887 44455 67888888889999999999999999999999999999999999999988888876
Q ss_pred HH-HHHH
Q 036160 578 GV-RALL 583 (601)
Q Consensus 578 ~~-~~~~ 583 (601)
+. +..|
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 53 4433
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.55 E-value=7.7e-08 Score=79.81 Aligned_cols=111 Identities=14% Similarity=-0.024 Sum_probs=78.8
Q ss_pred hhHHHHHHHhhccCcHHHHHHHHHHHHHHhC------C---------CC-ChhHHHHHHHHHHhcCChHHHHHHhHh-cC
Q 036160 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYG------I---------TP-TIKHFACMIDILGRAGKFTEIENFITE-TK 518 (601)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~ 518 (601)
..+......+.+.|++++|+..|........ . .| +...|..++.+|.+.|++++|+..+++ +.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3566777788888999999999888776410 0 11 135677777888888888888888877 44
Q ss_pred CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-cceeehhhh
Q 036160 519 LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME-SNYVFPSDI 566 (601)
Q Consensus 519 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 566 (601)
+.| +...|..++.++...|++++|+..++++++++|+++ .....+..+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 455 577778888888888888888888888888888765 334444333
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=3e-07 Score=73.56 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTPN-------------ALVWENLLGACSWHGNIELDEKDAEKLLEL---- 552 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 552 (601)
...+...+..+.+.|++++|+..|++ +.+.|+ ...|..++.++.+.|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34566778888999999999999998 444454 238999999999999999999999999999
Q ss_pred ---CCCCCcce----eehhhhhhhcCChhhHHHHHHHHHhc
Q 036160 553 ---EPKMESNY----VFPSDISATQGRWNDFSGVRALLSSQ 586 (601)
Q Consensus 553 ---~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 586 (601)
+|+++..| +..+.++...|++++|+..|++..+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999988753
No 168
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=1.9e-06 Score=68.04 Aligned_cols=118 Identities=16% Similarity=0.056 Sum_probs=89.1
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 498 (601)
+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|.+.++...+. .+.+...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 34566677778888888888888888888752 335567777888888888888888888888765 233467788888
Q ss_pred HHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCCh
Q 036160 499 DILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNI 539 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~ 539 (601)
.++.+.|++++|...+++ +...| +...+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888899888888887 33445 667777787888777765
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.54 E-value=2.6e-08 Score=77.32 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=56.0
Q ss_pred cCcHHHHHHHHHHHHHHhCC-CCC-hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHH
Q 036160 468 MGLIEEGKKHFSSIKKIYGI-TPT-IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDE 543 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 543 (601)
.|++++|+..|++..+. +. .|+ ...+..++.+|.+.|++++|+..+++ +...| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46667777777766542 10 132 45666677777777777777777776 33344 5666667777777777777777
Q ss_pred HHHHHHHhcCCCCCcc
Q 036160 544 KDAEKLLELEPKMESN 559 (601)
Q Consensus 544 ~~~~~~~~~~p~~~~~ 559 (601)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777766543
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=2.4e-06 Score=66.70 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=81.0
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 499 (601)
...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4566677777888888888888888887752 334557777778888888888888888888765 2334667777888
Q ss_pred HHHhcCChHHHHHHhHhc-CCCC-cHHHHHHHHHHHHhc
Q 036160 500 ILGRAGKFTEIENFITET-KLTP-NALVWENLLGACSWH 536 (601)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 536 (601)
++...|++++|...+++. ...| +...+..+...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 888888888888888773 3344 555666666555443
No 171
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=7.7e-07 Score=83.61 Aligned_cols=129 Identities=11% Similarity=0.017 Sum_probs=106.9
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----------------hhHHHHHHHhhccCcHHHHHHHHHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE----------------ITFVVVLSACSHMGLIEEGKKHFSSIK 482 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 482 (601)
+...|..+...+.+.|++++|+..|++..+. .|+. ..|..+..+|.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556777888889999999999999998885 4443 688889999999999999999999998
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 036160 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELD-EKDAEKLLE 551 (601)
Q Consensus 483 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 551 (601)
+. .+.+...+..++.+|...|++++|+..|++ +.+.| +...+..+..++...|+.++| ...++++++
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 233578889999999999999999999998 44566 678888999999999999888 557777764
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.52 E-value=9.2e-07 Score=67.63 Aligned_cols=101 Identities=12% Similarity=0.028 Sum_probs=78.8
Q ss_pred HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC---cHHHHHHHH
Q 036160 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP---NALVWENLL 530 (601)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p---~~~~~~~l~ 530 (601)
...+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|...+++ +...| +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 345667777788888888888888888765 233466777888888888888888888887 33444 477888888
Q ss_pred HHHHhc-CChhHHHHHHHHHHhcCCCCC
Q 036160 531 GACSWH-GNIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 531 ~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 557 (601)
..+... |++++|++.++++++..|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888899 999999999999999888654
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=5e-07 Score=71.08 Aligned_cols=97 Identities=10% Similarity=-0.063 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-------ceee
Q 036160 492 KHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES-------NYVF 562 (601)
Q Consensus 492 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 562 (601)
..+..++..+.+.|++++|++.|++ +.+.| +...|..++.+|...|++++|++.+++++++.|+++. ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4566788888888999999888887 44556 6778888888888889999999999988888887654 4666
Q ss_pred hhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 563 PSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 563 l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
++.++...|++++|++.|++..+..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 88888888999999888888765433
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=5.2e-06 Score=76.47 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=101.4
Q ss_pred HHHHHHHHcCCC---CCCHhHHHHHHHHHHhC-C-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHH-------
Q 036160 405 IDDAEAVFKGSA---LRDTASWNMMIGGYVKH-G-LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE------- 472 (601)
Q Consensus 405 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~------- 472 (601)
+++++++++.+. +.+..+|+.-...+.+. + ++++++++++++.+.. +-|...|+.-...+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhH
Confidence 555555555433 33555565555555544 5 6677777777776642 223445555444444444444
Q ss_pred -HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-------hHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCCh---
Q 036160 473 -EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK-------FTEIENFITE-TKLTP-NALVWENLLGACSWHGNI--- 539 (601)
Q Consensus 473 -~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~--- 539 (601)
++++.++++.+. .+-|...|+....++.+.++ ++++++.+++ +...| |...|+.+...+.+.|+-
T Consensus 184 ~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 184 GSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence 677777777665 23345666666666666665 5667777665 44455 667777766666665543
Q ss_pred -----------------hHHHHHHHHHHhcC------CCCCcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 540 -----------------ELDEKDAEKLLELE------PKMESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 540 -----------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
....+...++.... +..+-++..++.+|...|+.++|.++++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22222222222221 3445566678888888888888888888885
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.48 E-value=3.2e-07 Score=87.23 Aligned_cols=89 Identities=9% Similarity=-0.021 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
...|..+..+|.+.|++++|++.+++ +...| +...+..++.++...|++++|+..+++++++.|+++..+..++.++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56788899999999999999999998 56667 67899999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHH
Q 036160 569 TQGRWNDFSGV 579 (601)
Q Consensus 569 ~~g~~~~A~~~ 579 (601)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=1.1e-05 Score=73.99 Aligned_cols=181 Identities=8% Similarity=-0.022 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCC---CCCHhHHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCc-HHHHHHHH
Q 036160 405 IDDAEAVFKGSA---LRDTASWNMMIGGYVKHG--LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL-IEEGKKHF 478 (601)
Q Consensus 405 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 478 (601)
++++..+++.+. +.+..+|+.-...+.+.+ .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555433 456677777666777777 3788888888888853 3355567666666666777 58888888
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc------
Q 036160 479 SSIKKIYGITPTIKHFACMIDILGRA--------------GKFTEIENFITE-TKLTP-NALVWENLLGACSWH------ 536 (601)
Q Consensus 479 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~------ 536 (601)
+.+.+. .+-|...|+.....+.+. +.++++++.+++ +...| |...|+.+...+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 888876 234466676666666554 456778888877 44556 777887776666555
Q ss_pred -----CChhHHHHHHHHHHhcCCCCCcceeehhhh---hhhcCChhhHHHHHHHHHhcCC
Q 036160 537 -----GNIELDEKDAEKLLELEPKMESNYVFPSDI---SATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 537 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
+.++++++.+++++++.|++.-.+..++.+ ....|..++...++.++++..|
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 457889999999999999774443333322 1236778888888888876443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.43 E-value=1.3e-06 Score=69.04 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=42.3
Q ss_pred HHHHHHhcCChHHHHHHhHhc-CCCCc-H---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---Ccceeehhhhhh
Q 036160 497 MIDILGRAGKFTEIENFITET-KLTPN-A---LVWENLLGACSWHGNIELDEKDAEKLLELEPKM---ESNYVFPSDISA 568 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 568 (601)
++..+...|++++|...+++. ...|+ . ..+..++.++...|++++|+..++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344444555555555555441 12221 1 244444445555555555555555555555544 333445555555
Q ss_pred hcCChhhHHHHHHHHHh
Q 036160 569 TQGRWNDFSGVRALLSS 585 (601)
Q Consensus 569 ~~g~~~~A~~~~~~~~~ 585 (601)
..|++++|...|+++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554444
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=6.1e-07 Score=77.21 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=72.9
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCCH----------------
Q 036160 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRDT---------------- 420 (601)
Q Consensus 360 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~---------------- 420 (601)
........|+++.+.+.|+.-.... ......+..+...+...|++++|...|++.. +.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455666777766665333211 1134566778888999999999999998644 1222
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHH
Q 036160 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMID 499 (601)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 499 (601)
..|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .| +...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 445555555555555555555555555531 223334555555555555555555555555443 22 2344444444
Q ss_pred HHHhcCChHHH
Q 036160 500 ILGRAGKFTEI 510 (601)
Q Consensus 500 ~~~~~g~~~~A 510 (601)
++...++.+++
T Consensus 165 ~~~~~~~~~~~ 175 (198)
T 2fbn_A 165 CVNKLKEARKK 175 (198)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=2.2e-07 Score=73.63 Aligned_cols=110 Identities=6% Similarity=0.002 Sum_probs=85.2
Q ss_pred hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc-CCCC----c----HHHH
Q 036160 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTP----N----ALVW 526 (601)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~ 526 (601)
..+..+...+...|++++|...++...+. .+.+...+..++.++...|++++|...+++. ...| + ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777788888899999999999988876 2345777888888999999999999998873 2223 2 6778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
..++.++...|++++|...++++++..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 8888889999999999999999999888 5555555544433
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.42 E-value=5e-07 Score=71.49 Aligned_cols=114 Identities=9% Similarity=-0.030 Sum_probs=84.0
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCC-CCC----hhHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI-TPT----IKHF 494 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~ 494 (601)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+...... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567778888888899999999998888753 345567778888888889999999988888765211 122 5677
Q ss_pred HHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHH
Q 036160 495 ACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACS 534 (601)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~ 534 (601)
..++.++...|++++|.+.+++ +...|+......+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7888888889999999988887 345567666666555443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=7.7e-08 Score=74.63 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=43.2
Q ss_pred cCChHHHHHHhHh-cCC---CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHH
Q 036160 504 AGKFTEIENFITE-TKL---TP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578 (601)
Q Consensus 504 ~g~~~~A~~~~~~-~~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 578 (601)
.|++++|+..|++ +.. .| +...+..++.++...|++++|+..++++++..|+++.++..++.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555555 233 13 344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 036160 579 VRALLSS 585 (601)
Q Consensus 579 ~~~~~~~ 585 (601)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=4.3e-07 Score=75.22 Aligned_cols=102 Identities=15% Similarity=0.039 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CC---------CCC-HhhHHHHHHHhhccCcHHHHHHHHHHHH
Q 036160 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDE-------GY---------VPD-EITFVVVLSACSHMGLIEEGKKHFSSIK 482 (601)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~---------~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 482 (601)
...+......+.+.|++++|+..|++.... .- .|. ...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445667777788888888888888887763 00 122 2467777778888888888888888887
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcH
Q 036160 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNA 523 (601)
Q Consensus 483 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~ 523 (601)
+. -+.+...|..++.+|...|++++|...|++ +.+.|+.
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 65 233367777888888888888888888887 4456643
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=7.5e-06 Score=82.31 Aligned_cols=168 Identities=8% Similarity=-0.062 Sum_probs=136.8
Q ss_pred CHHHHHHHHcCCC---CCCHhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccC
Q 036160 404 SIDDAEAVFKGSA---LRDTASWNMMIGGYVKHGL----------GEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMG 469 (601)
Q Consensus 404 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~ 469 (601)
.-++|.+.++.+. +.+...|+.--.++.+.|+ ++++++.++++.+. .|. ..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 3456677777655 4456677776666666666 89999999999985 454 458888888888888
Q ss_pred --cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc--------
Q 036160 470 --LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG-KFTEIENFITE-TKLTP-NALVWENLLGACSWH-------- 536 (601)
Q Consensus 470 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~-------- 536 (601)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++++++ +...| |...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999986 2445778888888888889 89999999988 55677 788999988887763
Q ss_pred ------CChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhh
Q 036160 537 ------GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575 (601)
Q Consensus 537 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 575 (601)
+.++++.+.+.++++.+|++..+|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998666
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.38 E-value=1.2e-06 Score=82.26 Aligned_cols=153 Identities=7% Similarity=-0.016 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhcc
Q 036160 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468 (601)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 468 (601)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788888899999999999987542111111 1223333444433221 13678888899999
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHH-HhcCChhHHHHH
Q 036160 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGAC-SWHGNIELDEKD 545 (601)
Q Consensus 469 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~-~~~g~~~~A~~~ 545 (601)
|++++|+..+++..+. .+.+...|..+..+|...|++++|+..|++ +.+.| +...+..+.... ...+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 233578899999999999999999999998 55677 455666666553 445678899999
Q ss_pred HHHHHhcCCCCCc
Q 036160 546 AEKLLELEPKMES 558 (601)
Q Consensus 546 ~~~~~~~~p~~~~ 558 (601)
+.++++..|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999997653
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=5.8e-07 Score=74.26 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hh
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGY-VPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IK 492 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 492 (601)
++..+...+...|++++|+..+++..+..- .++. .++..+...+...|++++|.+.+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555556666666666666655554210 0111 23444455555555555555555554432111111 22
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHh
Q 036160 493 HFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
.+..++..+...|++++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333444444444555444444443
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=1.7e-06 Score=85.49 Aligned_cols=130 Identities=13% Similarity=0.039 Sum_probs=91.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 036160 428 GGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAG 505 (601)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 505 (601)
..+.+.|++++|++.|++..+. .|+ ...+..+..+|.+.|++++|.+.+++..+. .|+ ...+..++.+|.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3456678888888888888875 444 567888888888888888888888888764 444 677888888888888
Q ss_pred ChHHHHHHhHh-cCCCC-cHHHHHHHHHH--HHhcCChhHHHHHHH-----------HHHhcCCCCCcceee
Q 036160 506 KFTEIENFITE-TKLTP-NALVWENLLGA--CSWHGNIELDEKDAE-----------KLLELEPKMESNYVF 562 (601)
Q Consensus 506 ~~~~A~~~~~~-~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~~~~~~~ 562 (601)
++++|.+.+++ +...| +...+..+..+ +.+.|++++|++.++ ++++..|+....+..
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence 88888888887 33445 44566666655 777888888888888 777777765555443
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.3e-07 Score=72.54 Aligned_cols=92 Identities=11% Similarity=-0.052 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------Cccee
Q 036160 490 TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM------ESNYV 561 (601)
Q Consensus 490 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 561 (601)
+...+..++..+.+.|++++|++.+++ +...| +...+..++.++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345677778888888888888888887 33455 67788888888899999999999999999999987 66777
Q ss_pred ehhhhhhhcCChhhHHHHHH
Q 036160 562 FPSDISATQGRWNDFSGVRA 581 (601)
Q Consensus 562 ~l~~~~~~~g~~~~A~~~~~ 581 (601)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888888888887776655
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.32 E-value=1.7e-07 Score=74.71 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=69.7
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh----------HHHHHHhHh-cCCCC-cHHHHHHHHHH
Q 036160 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF----------TEIENFITE-TKLTP-NALVWENLLGA 532 (601)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~-~~~~p-~~~~~~~l~~~ 532 (601)
..+.+.+++|.+.++...+. -+.+...|..+..++...|++ ++|+..|++ +.+.| +...|..++.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 44667788899988888876 233477888888888888765 488888887 55667 56788888888
Q ss_pred HHhcC-----------ChhHHHHHHHHHHhcCCCC
Q 036160 533 CSWHG-----------NIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 533 ~~~~g-----------~~~~A~~~~~~~~~~~p~~ 556 (601)
|...| ++++|++.|+++++++|++
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 88764 7888888888888888864
No 189
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00035 Score=64.35 Aligned_cols=225 Identities=12% Similarity=0.023 Sum_probs=152.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHhhcCCC-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 036160 330 AQAGEAEMALKCFRKMRLEGIKSN-EFTLASCLNGCSPVA-TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC-G-SI 405 (601)
Q Consensus 330 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 405 (601)
.+.+..++|+++++++... .|+ ...++.--..+...+ .++++..+++.+.....+ +..+|+.-..++.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3445556788888888775 343 334444444444455 588888888888766533 555666655556555 6 78
Q ss_pred HHHHHHHcCCC---CCCHhHHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCc----
Q 036160 406 DDAEAVFKGSA---LRDTASWNMMIGGYVKHGLGE--------KALEAFRMMLDEGYVPDEITFVVVLSACSHMGL---- 470 (601)
Q Consensus 406 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---- 470 (601)
+++.++++++. +.|...|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 88988888766 446677776665665556566 8999999999863 3456678877777777765
Q ss_pred ---HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHhHhcC-C-------
Q 036160 471 ---IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF--------------------TEIENFITETK-L------- 519 (601)
Q Consensus 471 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~------- 519 (601)
++++++.+++++.. .+-|...|+.+-..+.+.|+. .+..++..++. .
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 68899998888875 344577787777777777764 33444444432 1
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCcce
Q 036160 520 TPNALVWENLLGACSWHGNIELDEKDAEKLL-ELEPKMESNY 560 (601)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~ 560 (601)
.+++..+..++..|...|+.++|.++++.+. +.+|-....|
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 2577788899999999999999999999997 6677443333
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=1.4e-05 Score=73.25 Aligned_cols=184 Identities=9% Similarity=-0.048 Sum_probs=138.0
Q ss_pred hcCCHH-HHHHHHcCCC---CCCHhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCC-CHhhHHHHHHHh
Q 036160 401 KCGSID-DAEAVFKGSA---LRDTASWNMMIGGYVKHGL----------GEKALEAFRMMLDEGYVP-DEITFVVVLSAC 465 (601)
Q Consensus 401 ~~~~~~-~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~ 465 (601)
+.|.++ +|..+++.+. +.+...|+.--..+...+. +++++.+++.+... .| +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 345444 6777777655 3345566654443333332 67899999999885 44 556777777777
Q ss_pred hccC--cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhc----
Q 036160 466 SHMG--LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK-FTEIENFITE-TKLTP-NALVWENLLGACSWH---- 536 (601)
Q Consensus 466 ~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~---- 536 (601)
...+ ++++++.+++.+.+. -+-|...|+.-..++...|. ++++++.+++ +...| |...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 7777 489999999999886 34457778777788888888 5899999888 44566 788998888877765
Q ss_pred ----------CChhHHHHHHHHHHhcCCCCCcceeehhhhhhhc-----------CChhhHHHHHHHHHhcCC
Q 036160 537 ----------GNIELDEKDAEKLLELEPKMESNYVFPSDISATQ-----------GRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 537 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~ 588 (601)
+.++++++.+.+++..+|+|..+|..+.+++... +.++++++.++++.+..|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 4578999999999999999999998887777766 568899999999887544
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=6.8e-06 Score=80.59 Aligned_cols=163 Identities=6% Similarity=-0.139 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHh----hHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hh
Q 036160 422 SWNMMIGGYVKHGLGEKALEAFRMMLDE-GYVPDEI----TFVVVLSACSHMGLIEEGKKHFSSIKKIY---GITPT-IK 492 (601)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~ 492 (601)
.+..+...|.+.|++++|.+.+.++... +-.++.. ..+.+-..+...|+++.|.++++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3667788888999999999888877652 1112221 23333445566788999999888765431 22222 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHhcC-------CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-------
Q 036160 493 HFACMIDILGRAGKFTEIENFITETK-------LTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKME------- 557 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------- 557 (601)
++..++..|...|++++|..+++++. -+| ...++..++..|...|++++|...+++++...|..+
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77788999999999999999988621 122 356788888999999999999999999987644322
Q ss_pred cceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 558 SNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 558 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
..+..++.++...|++++|..++....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344567778888999999998877664
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=8.6e-06 Score=67.03 Aligned_cols=130 Identities=10% Similarity=-0.032 Sum_probs=85.2
Q ss_pred hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc-C----C-CC--cH
Q 036160 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFITET-K----L-TP--NA 523 (601)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~-~p--~~ 523 (601)
.++..+...+...|++++|...+++..+...-.++ ...+..++..+...|++++|.+.+++. . . .| ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666667777778888888777776554211112 236667777777888888877777762 1 1 11 14
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------CCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPK------MESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
..+..++..+...|++++|...++++++..+. ....+..++.++...|++++|.+++++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45666777777788888888888877765322 234566777778888888888888776654
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.21 E-value=2e-06 Score=64.14 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
+...+..++.++...|++++|+..++++++.+|+++.+|..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666666666666666666666666666666666666666666666665543
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.21 E-value=1.5e-06 Score=66.91 Aligned_cols=80 Identities=9% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036160 473 EGKKHFSSIKKIYGITP-TIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKL 549 (601)
Q Consensus 473 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 549 (601)
.|.+.+++..+. .| +...+..++..|...|++++|+..+++ +...| +...|..++.++...|++++|+..++++
T Consensus 3 ~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566655542 33 366677777777777777777777776 33344 5667777777777777777777777777
Q ss_pred HhcCCC
Q 036160 550 LELEPK 555 (601)
Q Consensus 550 ~~~~p~ 555 (601)
++..|+
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 777664
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=2.3e-06 Score=81.29 Aligned_cols=115 Identities=9% Similarity=-0.040 Sum_probs=86.6
Q ss_pred hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCC-cHHHHHHHHHHHH
Q 036160 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENLLGACS 534 (601)
Q Consensus 456 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 534 (601)
..+..+...+.+.|++++|++.|++..+.. +... .....+++ ....| +...|..++.++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~------~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADG------AKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHH------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHH------HHHHHHHHHHHHHHHHHHH
Confidence 346666677777778888887777766531 1100 00011111 11234 5678899999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..+..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999998876553
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.16 E-value=1.3e-06 Score=69.62 Aligned_cols=87 Identities=13% Similarity=0.029 Sum_probs=58.0
Q ss_pred HhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCCCcceeehhhhhhh
Q 036160 502 GRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNI----------ELDEKDAEKLLELEPKMESNYVFPSDISAT 569 (601)
Q Consensus 502 ~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 569 (601)
.+.+++++|++.+++ +...| +...|..++.++...+++ ++|+..++++++++|+++.+|+.++.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 344556777777666 33445 666777777766666554 477777777777777777777777777776
Q ss_pred cC-----------ChhhHHHHHHHHHhcCC
Q 036160 570 QG-----------RWNDFSGVRALLSSQGI 588 (601)
Q Consensus 570 ~g-----------~~~~A~~~~~~~~~~~~ 588 (601)
.| ++++|+++|++..+..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 64 67777777777766544
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=2.4e-06 Score=62.35 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhh
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 568 (601)
...+..+...+...|++++|...+++ +...| +...+..++.++...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45666777778888888888888876 33344 56777888888888888888888888888888888888877777776
Q ss_pred hcC
Q 036160 569 TQG 571 (601)
Q Consensus 569 ~~g 571 (601)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=2.4e-05 Score=76.92 Aligned_cols=120 Identities=17% Similarity=0.083 Sum_probs=62.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCC---CCC---------------HhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSA---LRD---------------TASWNMMIGGYVKHGLGEKALEAFRMMLDE 449 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 449 (601)
....+..+...+.+.|++++|...|++.. +.+ ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35567788899999999999999988654 222 234444444444555555555555444443
Q ss_pred CCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 036160 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIE 511 (601)
Q Consensus 450 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 511 (601)
. +.+...|..+..+|...|++++|...|+++.+. .|+ ...+..+..++.+.|+.++|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112234444444444444444444444444322 222 334444444444444444433
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.00045 Score=67.47 Aligned_cols=163 Identities=7% Similarity=-0.103 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHhhcCCCchhhHHHHHHHHHHh----CCCC-chhH
Q 036160 322 YTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEF----TLASCLNGCSPVATLANGRLLHSIAVKT----GHLL-DMFV 391 (601)
Q Consensus 322 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 391 (601)
+..+...|...|++++|.+.+..+...- ..++.. ..+.+-..+...|+.+.+..++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567778888888888888887765431 112211 2223333455678888888888776642 2222 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCC--------CC-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCC-C-C--Hh
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSA--------LR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDE--GYV-P-D--EI 456 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~-p-~--~~ 456 (601)
+..+...|...|++++|..++++.. .+ ....+..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788999999999999988886432 11 3457888899999999999999999887652 111 2 1 13
Q ss_pred hHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 457 TFVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 457 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
.+..+...+...|++++|...+....+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566667788899999999888877654
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.11 E-value=5.5e-06 Score=60.25 Aligned_cols=72 Identities=14% Similarity=0.020 Sum_probs=60.2
Q ss_pred CCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcCCC
Q 036160 520 TPNALVWENLLGACSWHGN---IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592 (601)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 592 (601)
++|+..+..++.++...++ .++|..+++++++.+|+++.+...++..+...|++++|+.+|+++.+..+. .|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc
Confidence 3477788888888765544 689999999999999999999999999999999999999999999887766 44
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=4.6e-05 Score=76.63 Aligned_cols=155 Identities=10% Similarity=0.021 Sum_probs=127.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCc----------HHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 036160 433 HGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGL----------IEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501 (601)
Q Consensus 433 ~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 501 (601)
....++|++.++++.+. .|+.. .|+.--.++...|+ ++++++.++.+.+. .+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34457889999999985 66654 56666666666666 89999999999876 234477888888888
Q ss_pred HhcC--ChHHHHHHhHhc-CCCC-cHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCcceeehhhhhhhc------
Q 036160 502 GRAG--KFTEIENFITET-KLTP-NALVWENLLGACSWHG-NIELDEKDAEKLLELEPKMESNYVFPSDISATQ------ 570 (601)
Q Consensus 502 ~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 570 (601)
.+.| +++++++.++++ ...| +...|+.-..++.+.| .++++.+.++++++.+|+|..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 679999999984 4566 7889999999999999 899999999999999999999999999998774
Q ss_pred --------CChhhHHHHHHHHHhcCCcCC
Q 036160 571 --------GRWNDFSGVRALLSSQGIKKE 591 (601)
Q Consensus 571 --------g~~~~A~~~~~~~~~~~~~~~ 591 (601)
+++++|.+++++.....|...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 667999999998887665443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=6.2e-06 Score=80.73 Aligned_cols=94 Identities=7% Similarity=0.006 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhHhc--------C-CCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC
Q 036160 492 KHFACMIDILGRAGKFTEIENFITET--------K-LTPN-ALVWENLLGACSWHGNIELDEKDAEKLLE-----LEPKM 556 (601)
Q Consensus 492 ~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~ 556 (601)
.+++.|+.+|...|++++|..++++. + ..|+ ..+++.|+..|...|++++|+.+++++++ +.|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555554431 1 1222 23455555666666666666666666654 24444
Q ss_pred Cccee---ehhhhhhhcCChhhHHHHHHHHHh
Q 036160 557 ESNYV---FPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 557 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
|.+-. .+..++..+|++++|..++.++++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 444555555666666666665554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.1e-05 Score=61.51 Aligned_cols=70 Identities=7% Similarity=-0.080 Sum_probs=64.2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCcC
Q 036160 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590 (601)
Q Consensus 521 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 590 (601)
++...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|+..+++..+..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4567888899999999999999999999999999999999999999999999999999999998766543
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.89 E-value=2.3e-05 Score=62.33 Aligned_cols=109 Identities=9% Similarity=-0.137 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHH
Q 036160 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR----AGKFTEI 510 (601)
Q Consensus 435 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 510 (601)
++++|++.|++..+.| .|+.. |...|...+.+++|.+.|++..+. -++..+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4556666666666654 22222 444455555555566666555443 234445555555555 4555555
Q ss_pred HHHhHhcCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhc
Q 036160 511 ENFITETKLTPNALVWENLLGACSW----HGNIELDEKDAEKLLEL 552 (601)
Q Consensus 511 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 552 (601)
.++|++....-++.....|...|.. .+|.++|...++++.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555552212344455555555555 45555555555555554
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.83 E-value=8.3e-06 Score=60.66 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=58.0
Q ss_pred HHHHHHhcCChHHHHHHhHh-cCCCC-cHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCCh
Q 036160 497 MIDILGRAGKFTEIENFITE-TKLTP-NAL-VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRW 573 (601)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 573 (601)
.+..+.+.|++++|++.+++ +...| +.. .+..++.++...|++++|++.++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45667778888888888887 33455 556 77888888888888888888888888888877665522 556
Q ss_pred hhHHHHHHHHH
Q 036160 574 NDFSGVRALLS 584 (601)
Q Consensus 574 ~~A~~~~~~~~ 584 (601)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 66666666443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.81 E-value=2.6e-05 Score=56.72 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCC
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 588 (601)
+...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4668888999999999999999999999999999999999999999999999999999999987654
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=0.00035 Score=68.46 Aligned_cols=124 Identities=12% Similarity=-0.034 Sum_probs=90.9
Q ss_pred HHHhCCChHHHHHHHHHHHHc---CCCCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHHh----C-CCCC-hhHHH
Q 036160 429 GYVKHGLGEKALEAFRMMLDE---GYVPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKIY----G-ITPT-IKHFA 495 (601)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~---~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~p~-~~~~~ 495 (601)
.+...|++++|+.++++..+. -+.|+. .+++.|..+|...|++++|..++++..+.+ | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778888888888877652 123332 378888999999999999999888875431 2 2233 55788
Q ss_pred HHHHHHHhcCChHHHHHHhHhc--------C-CCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 496 CMIDILGRAGKFTEIENFITET--------K-LTPN-ALVWENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
.|+..|..+|++++|+.++++. + -.|+ ..+.+.+..++...|.+++|+.++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988862 2 2233 234556667778889999999999998874
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.72 E-value=2.8e-05 Score=59.66 Aligned_cols=75 Identities=8% Similarity=0.021 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCC-CHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 438 KALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
.|+..|++..+. .| +...+..+...|...|++++|...+++..+. .+.+...+..++.+|...|++++|...+++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555555543 23 3345555555555666666666666655544 122244555555666666666666665555
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.00068 Score=53.73 Aligned_cols=113 Identities=4% Similarity=-0.117 Sum_probs=94.3
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHh----cCChhHHH
Q 036160 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW----HGNIELDE 543 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 543 (601)
.+++++|.+.|++..+. + .|+ .. |...|...+.+++|.++|++.....++.....+...|.. .+|+++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45788999999998776 4 333 33 788888888899999999984434678888899998888 78999999
Q ss_pred HHHHHHHhcCCCCCcceeehhhhhhh----cCChhhHHHHHHHHHhcCC
Q 036160 544 KDAEKLLELEPKMESNYVFPSDISAT----QGRWNDFSGVRALLSSQGI 588 (601)
Q Consensus 544 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 588 (601)
..++++.+. .++..+..|+.+|.. .++.++|..+|++..+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987 568889999999999 8999999999999988765
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.66 E-value=0.00062 Score=63.94 Aligned_cols=404 Identities=10% Similarity=0.068 Sum_probs=203.7
Q ss_pred CcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHH
Q 036160 15 NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVD 94 (601)
Q Consensus 15 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (601)
|+..|.-+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|++.++..+..+++. .|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 455566666666666666666666666655422 22333456666666665554433332 123222233333
Q ss_pred HhhcCCChhHHHHHHhcCCC------------------------CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036160 95 MYSKCGLADNALKVFYRIKD------------------------PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150 (601)
Q Consensus 95 ~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 150 (601)
-|...|.++.|.-+|..+.. .++.+|-.+-.+|...+.+.-|.-.--.+. .
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI-----v 227 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V 227 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----C
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc-----c
Confidence 33333444444444333321 345566666667776666655544332222 1
Q ss_pred ChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC-----------CCcc
Q 036160 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-----------QDSV 219 (601)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~ 219 (601)
.+.....++..|-..|.+++.+.+++.-+... .....+|+-|.-.|++- ++++..+.++..-. ....
T Consensus 228 hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 228 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 12223345555666677777777776654221 34566788888887765 56666666655433 1344
Q ss_pred cHHHHHHHHhcCCCchhHHHHH-------------HHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccCCC
Q 036160 220 SWNALFSRFQDYESPDQGLRIF-------------YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286 (601)
Q Consensus 220 ~~~~li~~~~~~~~~~~a~~~~-------------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 286 (601)
.|.-++-.|....+++.|.... .+...+ .++...|-..|..|....- ..--.++.-+. ..+.+
T Consensus 306 LW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P-~lL~DLL~vL~-prlDh 381 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKP-LLLNDLLMVLS-PRLDH 381 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCC-TTSHHHHHHHC-TTCCS
T ss_pred hHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhCh-HHHHHHHHhcc-ccCCh
Confidence 6888888888888777665431 111111 2344444444444433211 11111111110 00111
Q ss_pred CcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 036160 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT-AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365 (601)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 365 (601)
+..++.+.+.|++.-....+..+...|...-| ++-..|....+++.-. .-+..|-
T Consensus 382 -----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR-------------------~SId~yd 437 (624)
T 3lvg_A 382 -----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR-------------------TSIDAYD 437 (624)
T ss_dssp -----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHH-------------------HTTSSCC
T ss_pred -----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH-------------------HHHHHhc
Confidence 23444555556555555555555555544433 3444555555554321 1222222
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 036160 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445 (601)
Q Consensus 366 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (601)
+-.....|.++ .++ +-...-..-...|.++++++++.++.++-. .|.-.|...+..|+.+-|.++++-
T Consensus 438 NFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~y 505 (624)
T 3lvg_A 438 NFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQW 505 (624)
T ss_dssp CSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHH
T ss_pred cccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22233222222 111 111112233455777788888877655322 122223445567778888888888
Q ss_pred HHHcCCCCCHhhHHHHHHHhhccCcHHHHHHH
Q 036160 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 446 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 477 (601)
..+.| +...|...+-.|...=+++-++++
T Consensus 506 Fv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 506 FLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 77755 445677777777777777777665
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.55 E-value=0.00044 Score=63.64 Aligned_cols=138 Identities=13% Similarity=-0.021 Sum_probs=67.5
Q ss_pred CCCHhHHHHHHHHHH--hCC---ChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhcc---C-c-HHHHHH---HHHHHH
Q 036160 417 LRDTASWNMMIGGYV--KHG---LGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHM---G-L-IEEGKK---HFSSIK 482 (601)
Q Consensus 417 ~~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~---~-~-~~~a~~---~~~~~~ 482 (601)
+.+...|...+++.. ..+ +..+|..+|++.++. .|+. ..+..+..+|... + . ...... .++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 446666666665533 222 236677777777773 5654 3444444444311 1 0 001111 111110
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 483 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
.....+.+...|..+...+...|++++|...+++ +.+.|+...|..++..+.-.|++++|.+.+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0001133345555555555555666666666665 2234555555555555666666666666666666666643
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.53 E-value=7.9e-05 Score=55.18 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=57.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-ceeehhhhhhhcCChhhHHHHHHHHHhcCCcCC
Q 036160 528 NLLGACSWHGNIELDEKDAEKLLELEPKMES-NYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591 (601)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 591 (601)
..+..+...|++++|+..++++++..|+++. .+..++.+|...|++++|...|++..+..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 3566788999999999999999999999999 999999999999999999999999988766443
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.50 E-value=0.00059 Score=50.45 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=38.8
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD-EITFVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
+...|..+...+...|++++|+..|++..+. .|+ ...|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666666666666666666666666664 333 345666666666666666666666665543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.50 E-value=0.0016 Score=59.87 Aligned_cols=134 Identities=9% Similarity=-0.024 Sum_probs=90.9
Q ss_pred CCCHhhHHHHHHHhh--cc---CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH----hcCC----h---HHHHHHh
Q 036160 452 VPDEITFVVVLSACS--HM---GLIEEGKKHFSSIKKIYGITPT-IKHFACMIDILG----RAGK----F---TEIENFI 514 (601)
Q Consensus 452 ~p~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~----~~g~----~---~~A~~~~ 514 (601)
+.+...|...+++.. .. .+..+|..+|++..+. .|+ ...+..+..+|. ..+. . ..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 556667777776543 22 3457888999988875 676 445554443332 1111 1 1222222
Q ss_pred HhcCC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 515 TETKL-TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 515 ~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
..+.. +.++.++..+...+...|++++|+..++++++++| +...|..+++++...|++++|.+.+++....+|.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22333 33778888888777778999999999999999987 4567778899999999999999999988776653
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.41 E-value=0.00028 Score=66.16 Aligned_cols=236 Identities=10% Similarity=0.111 Sum_probs=145.4
Q ss_pred hhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 036160 86 KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165 (601)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 165 (601)
+.+|..|..+....+++.+|++-|-+ ..|...|..+|.+..+.|.++.-...+...++..- ++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 34566666666666666666554432 24455566666666666776666666655444322 223334566666666
Q ss_pred CCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCC------------------------CCcccH
Q 036160 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH------------------------QDSVSW 221 (601)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~ 221 (601)
+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 66655444432 24444445555556666666666666555432 467789
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHHHHHHHHHHHccC-CCCcchhhHHHHHHHh
Q 036160 222 NALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHVVGTSLVDMYDK 300 (601)
Q Consensus 222 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 300 (601)
-.+-.+|+..+.+.-|.-.--.+.-. | ..+..++..|-..|-+++...+++.-. |+ .....+|+-|.-.|++
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHh
Confidence 99999999999888776554444322 1 122335556788888888888887665 33 3455677777777776
Q ss_pred cCCHHHHHHHHhhCCC----C-------CcccHHHHHHHHHhcCChhHHHH
Q 036160 301 SGCLEDAGVAFDSLAN----K-------DLFAYTAIITSYAQAGEAEMALK 340 (601)
Q Consensus 301 ~~~~~~a~~~~~~~~~----~-------~~~~~~~ll~~~~~~g~~~~a~~ 340 (601)
- ++++..+.++..-. | ....|..++-.|+.-.++|.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 56666666655433 2 44668888888888888887753
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.39 E-value=0.0003 Score=61.77 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=53.1
Q ss_pred HHHHHHhHh-cCCCCc---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCC-Ccceeehhhhhhhc-CChhhH
Q 036160 508 TEIENFITE-TKLTPN---ALVWENLLGACSW-----HGNIELDEKDAEKLLELEPKM-ESNYVFPSDISATQ-GRWNDF 576 (601)
Q Consensus 508 ~~A~~~~~~-~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 576 (601)
.+|...+++ +.+.|+ ...|..++..|.+ .|+.++|++++++++++.|+. ..+++.++..++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 345555554 344554 4466666666666 367777777777777777753 66677777666663 677777
Q ss_pred HHHHHHHHhcCCcCCCc
Q 036160 577 SGVRALLSSQGIKKEPS 593 (601)
Q Consensus 577 ~~~~~~~~~~~~~~~~~ 593 (601)
.+++++..+..+...|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77777666655554444
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.37 E-value=0.00073 Score=48.87 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036160 488 TPTIKHFACMIDILGRAGK---FTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555 (601)
Q Consensus 488 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 555 (601)
+.++..+..+..++...++ .++|..++++ +...| ++..+..++..+.+.|++++|+..|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4557777788888765554 6889998887 55667 6788888888999999999999999999999886
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.27 E-value=0.00017 Score=69.37 Aligned_cols=86 Identities=12% Similarity=0.029 Sum_probs=61.2
Q ss_pred ccCcHHHHHHHHHHHHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc--------C-CCCc-HHHHHHHH
Q 036160 467 HMGLIEEGKKHFSSIKKIY--GITPT----IKHFACMIDILGRAGKFTEIENFITET--------K-LTPN-ALVWENLL 530 (601)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~~~~l~ 530 (601)
..|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. + ..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 5678888888888766531 12232 456777888888888888888887762 2 2343 35677888
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 036160 531 GACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
..|...|++++|+.++++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8888888888888888888877
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.24 E-value=0.00088 Score=64.41 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=57.9
Q ss_pred hCCChHHHHHHHHHHHHc---CCCCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHH----hC-CCCC-hhHHHHHH
Q 036160 432 KHGLGEKALEAFRMMLDE---GYVPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKI----YG-ITPT-IKHFACMI 498 (601)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~---~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~p~-~~~~~~l~ 498 (601)
..|++++|+.++++..+. -+.|+. .+++.|..+|...|++++|..++++..+. +| ..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456788888888776652 233332 36777788888888888888888776543 11 1233 44677788
Q ss_pred HHHHhcCChHHHHHHhHh
Q 036160 499 DILGRAGKFTEIENFITE 516 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~ 516 (601)
..|..+|++++|+.++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHH
Confidence 888888888888887776
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.24 E-value=0.00035 Score=67.38 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=64.8
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc--------C-CCCc-HHH
Q 036160 462 LSACSHMGLIEEGKKHFSSIKKIY--GITPT----IKHFACMIDILGRAGKFTEIENFITET--------K-LTPN-ALV 525 (601)
Q Consensus 462 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~ 525 (601)
+..+.+.|++++|..++++..+.. -+.|+ ..+++.++.+|...|++++|+.++++. + ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 555667788888888888776431 12222 456777888888888888888887752 1 2333 356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036160 526 WENLLGACSWHGNIELDEKDAEKLLEL 552 (601)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (601)
++.|+..|...|++++|+.++++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 778888888888888888888888887
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.12 E-value=0.0016 Score=51.26 Aligned_cols=89 Identities=17% Similarity=-0.023 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHhHhc-CCC-C--cHHHHHHHHHHHHhcCChhH
Q 036160 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG---KFTEIENFITET-KLT-P--NALVWENLLGACSWHGNIEL 541 (601)
Q Consensus 469 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 541 (601)
.....+.+.|.+..+. + .++..+...+..++.+.+ +.++++.+++++ ... | +...+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3445555666555443 2 366777777778888877 455788777762 233 5 45677778888899999999
Q ss_pred HHHHHHHHHhcCCCCCcc
Q 036160 542 DEKDAEKLLELEPKMESN 559 (601)
Q Consensus 542 A~~~~~~~~~~~p~~~~~ 559 (601)
|.+.++.+++.+|+|..+
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999999999966433
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.06 E-value=0.011 Score=44.51 Aligned_cols=141 Identities=9% Similarity=0.017 Sum_probs=95.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 036160 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 509 (601)
+.-.|..++..++..+.... .+..-|+.++--....-+-+...++++.+-+-|.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467788888888887763 34455666665555555666666666655333222 23455555
Q ss_pred HHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 510 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
...-+-.++ .+....+..+.....+|..+.-.+++..++...|-+|.....++.+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555443 344556667777888888888888888876655557888888899999999999999999988888874
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.99 E-value=0.00071 Score=53.26 Aligned_cols=82 Identities=7% Similarity=-0.128 Sum_probs=67.4
Q ss_pred HHHHHHhHhc-C-CCCcHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-C-CCCcceeehhhhhhhcCChhhHHHHH
Q 036160 508 TEIENFITET-K-LTPNALVWENLLGACSWHG---NIELDEKDAEKLLELE-P-KMESNYVFPSDISATQGRWNDFSGVR 580 (601)
Q Consensus 508 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 580 (601)
..+.+.+.+. . -.++..+...+.+++.+.+ +.++++.+++++++.+ | ++...++.++..|++.|++++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444431 1 2468899999999999988 7779999999999998 7 56889999999999999999999999
Q ss_pred HHHHhcCCc
Q 036160 581 ALLSSQGIK 589 (601)
Q Consensus 581 ~~~~~~~~~ 589 (601)
+.+.+..|.
T Consensus 95 ~~lL~ieP~ 103 (152)
T 1pc2_A 95 RGLLQTEPQ 103 (152)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 999886654
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.0037 Score=60.25 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=67.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc---CCCCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hh
Q 036160 426 MIGGYVKHGLGEKALEAFRMMLDE---GYVPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKIY-----GITPT-IK 492 (601)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~ 492 (601)
.+..+.+.|++++|+.++++..+. -+.|+. .+++.+..+|...|++++|+.+++++.+.+ ...|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566788999999999888753 233433 367888888989999999999988775431 12233 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHh
Q 036160 493 HFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
+++.|+..|..+|++++|+.++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 688888999999999999888876
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.87 E-value=0.003 Score=46.90 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHhc-C--------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccee
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITET-K--------LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 561 (601)
..-+..|+..+.+.|+++.|...+++. . -.+...++..++.++.+.|+++.|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334456667777777777777776651 1 1235678889999999999999999999999999998866544
Q ss_pred eh
Q 036160 562 FP 563 (601)
Q Consensus 562 ~l 563 (601)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.085 Score=56.08 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=69.1
Q ss_pred HHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHH
Q 036160 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477 (601)
Q Consensus 398 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 477 (601)
.....|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3556789999999887764 567899999999999999999999988753 34444455556666665555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcC
Q 036160 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518 (601)
Q Consensus 478 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (601)
-+..... | .++.-..+|.+.|++++|++++.+++
T Consensus 730 ~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 730 AKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 4444332 1 12333444556677777776666654
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.64 E-value=0.67 Score=46.59 Aligned_cols=114 Identities=8% Similarity=-0.057 Sum_probs=73.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHh----hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 036160 434 GLGEKALEAFRMMLDEGYVPDEI----TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509 (601)
Q Consensus 434 ~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 509 (601)
.+.+.|...|....+.+ ..+.. ....+.......+...++...+...... .++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37889999998887643 23332 2233333445555345555555554332 3444444455555668899999
Q ss_pred HHHHhHhcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036160 510 IENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLLE 551 (601)
Q Consensus 510 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (601)
|...|+.+.-.+ ...-..-++.++...|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999987443 234445566777888999999999999875
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.61 E-value=0.005 Score=54.20 Aligned_cols=105 Identities=9% Similarity=0.052 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHhHh-cCCCC--cHHHHHHHHHHHHh-cCC
Q 036160 471 IEEGKKHFSSIKKIYGITPT---IKHFACMIDILGRA-----GKFTEIENFITE-TKLTP--NALVWENLLGACSW-HGN 538 (601)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~-~~~~p--~~~~~~~l~~~~~~-~g~ 538 (601)
...|...+++..+. .|+ ...|..|+..|... |+.++|.+.|++ +.+.| +..++...+..++. .|+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45566666666544 566 44677777777774 888888888887 55667 36677777777766 488
Q ss_pred hhHHHHHHHHHHhcCCCC-CcceeehhhhhhhcCChhhHHHHHHHHH
Q 036160 539 IELDEKDAEKLLELEPKM-ESNYVFPSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 539 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
.++|.+.+++++...|.. |. +.+...++.++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhH
Confidence 888888888888877742 22 34445566667777776554
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.55 E-value=0.032 Score=42.13 Aligned_cols=92 Identities=16% Similarity=-0.049 Sum_probs=66.2
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH---HHHHhHhcC-CC-C--cHHHHHHHHHHHHhcCCh
Q 036160 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE---IENFITETK-LT-P--NALVWENLLGACSWHGNI 539 (601)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~ 539 (601)
.......+.+.|...... | .|+..+-..++.++.+..+..+ ++.+++++- .. | .......+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455566666655554 3 3777777778888888887665 788888743 33 4 345667778889999999
Q ss_pred hHHHHHHHHHHhcCCCCCcce
Q 036160 540 ELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~~~~~~ 560 (601)
++|.+.++.+++.+|+|..+.
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999775443
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.16 Score=41.02 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=89.0
Q ss_pred HHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHH
Q 036160 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 476 (601)
+.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++... +..+.-.|.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455678889888887765 4677899999999999999999999987653 4455555666787777666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036160 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549 (601)
Q Consensus 477 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 549 (601)
+-+..... | -++.-...+.-.|+++++.+++.+.+.-|.. .......|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 55444333 2 2344455667789999999999887733321 22223467777787777655
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.27 E-value=0.12 Score=55.05 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=35.8
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346 (601)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 346 (601)
.....|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3456788888888776663 45678888888888888888888888764
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.24 E-value=0.0062 Score=45.18 Aligned_cols=68 Identities=15% Similarity=-0.122 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 522 NALVWENLLGACSWHGNIELDEKDAEKLLELE-------PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
+..-...++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..++++..+..|.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 44555678999999999999999999999863 234556889999999999999999999999875554
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.98 E-value=0.097 Score=40.57 Aligned_cols=112 Identities=8% Similarity=0.089 Sum_probs=71.3
Q ss_pred CCCHhHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCHh-hHHHHHH------HhhccCcHHHHHHHHHHHHH
Q 036160 417 LRDTASWNMMIGGYVKHGLG------EKALEAFRMMLDEGYVPDEI-TFVVVLS------ACSHMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 483 (601)
+.|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .+...+. .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55788888888888888888 8888888888875 667542 1111111 12334678888888888766
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHH
Q 036160 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLG 531 (601)
Q Consensus 484 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~ 531 (601)
. +-.- ...|-..++.=.++|+...|..++.+ ++..| +...+...+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 4 2222 55666666666778888888888776 44444 3344444443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.016 Score=59.16 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=50.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHH
Q 036160 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583 (601)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 583 (601)
..-|...|+++.|.++.++++...|.+-.+|..|+.+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455778899999999999999999999999999999999999999999999876
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.46 E-value=3.1 Score=43.72 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145 (601)
Q Consensus 105 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 145 (601)
+.++|..+..| -|..++++..+.++.+.+.++|..+..
T Consensus 221 l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 221 SFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555433 467778888888899999999988864
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.30 E-value=0.037 Score=42.87 Aligned_cols=101 Identities=11% Similarity=0.080 Sum_probs=70.6
Q ss_pred CHhhHHHHHHHhhccCcH------HHHHHHHHHHHHHhCCCCCh-hHHHHHHHH------HHhcCChHHHHHHhHhc-C-
Q 036160 454 DEITFVVVLSACSHMGLI------EEGKKHFSSIKKIYGITPTI-KHFACMIDI------LGRAGKFTEIENFITET-K- 518 (601)
Q Consensus 454 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~-~- 518 (601)
|..+|...+....+.|++ ++..++|++.... ++|+. ..|...+.. +...++.++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 456888888888878988 8888899988875 67763 223333322 23457888888888863 1
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 519 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
.+.=..+|-....--.++|+.+.|.+++.+++.+.|..
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 12226666666666778899999999999999888854
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.93 E-value=0.018 Score=43.53 Aligned_cols=70 Identities=6% Similarity=-0.189 Sum_probs=59.0
Q ss_pred CCcHHHHHHHHHHHHhcCChhH---HHHHHHHHHhcC-C-CCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 520 TPNALVWENLLGACSWHGNIEL---DEKDAEKLLELE-P-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
.|+..+-..+.+++.+.++... ++.+++.+++.. | ......+.|+..+++.|++++|+++.+.+.+..|.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 4788888889999998876555 999999999877 5 46678889999999999999999999999875553
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.76 E-value=0.23 Score=38.21 Aligned_cols=71 Identities=17% Similarity=0.074 Sum_probs=52.1
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHhHhc-CCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 488 TPTIKHFACMIDILGRAGKFT---EIENFITET-KLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 488 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
.|+..+--.++.++.+..+.+ +++.+++++ ...| .......+.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 466666667777887777644 566677663 2334 4556777778899999999999999999999997743
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.65 E-value=1.1 Score=34.10 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 036160 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487 (601)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 487 (601)
.....-+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.+. |+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 34555667778888888888888886443 4778888888888888888888888888888776 54
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.7 Score=37.36 Aligned_cols=130 Identities=10% Similarity=0.038 Sum_probs=89.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 036160 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506 (601)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 506 (601)
+....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34556789999999987765 4677899999999999999999999887642 4566677777888
Q ss_pred hHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhh-hhcCChhhHHHHHHHHH
Q 036160 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS-ATQGRWNDFSGVRALLS 584 (601)
Q Consensus 507 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 584 (601)
.+.-..+-+....+- -++.....+.-.|+++++.+++.+.-.. -.+... ...|-.+.|.++++.+.
T Consensus 76 ~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~---------~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSL---------PLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCH---------HHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCCh---------HHHHHHHHHcCcHHHHHHHHHHhC
Confidence 776665544322112 2334455667889999999998654321 122222 23577888888887663
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.38 E-value=0.12 Score=39.73 Aligned_cols=70 Identities=9% Similarity=-0.108 Sum_probs=59.0
Q ss_pred CCcHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCC-CCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 520 TPNALVWENLLGACSWHG---NIELDEKDAEKLLELEPK-MESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
.|+..+-..+.+++.+.. +..+++.+++.++...|. .....+.|+..+++.|++++|+++.+.+.+..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 578888888899998876 456899999999998884 5567788999999999999999999999875553
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.84 E-value=0.054 Score=41.06 Aligned_cols=72 Identities=17% Similarity=0.063 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHhHhc-CCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 036160 488 TPTIKHFACMIDILGRAGKFT---EIENFITET-KLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559 (601)
Q Consensus 488 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 559 (601)
.|++.+--.++.++.+..+.+ +++.+++++ ...| ....+..+.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 566677777888888887654 577777763 2345 35677888889999999999999999999999987443
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.46 E-value=0.53 Score=35.70 Aligned_cols=68 Identities=9% Similarity=-0.035 Sum_probs=45.4
Q ss_pred CCCHhhHHHHHHHhhccC---cHHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChHHHHHHhHh-cCCCCc
Q 036160 452 VPDEITFVVVLSACSHMG---LIEEGKKHFSSIKKIYGITP--TIKHFACMIDILGRAGKFTEIENFITE-TKLTPN 522 (601)
Q Consensus 452 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~ 522 (601)
.|+..|--.+..++.+.. +..+++.+++.+.+. + | ..+.+-.|+-++.+.|++++|+++.+. +...|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 455555555555665554 445677787777765 3 4 245566677788888888888888887 556774
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.30 E-value=9.4 Score=40.20 Aligned_cols=260 Identities=8% Similarity=-0.022 Sum_probs=135.3
Q ss_pred HHHHHHhcCCccHHHHHHhhcCCC----Ccc--cHHHHHHHHhcCCCchhHHHHHHHHHHCCC-------CCCHhhHHHH
Q 036160 193 LVSMYMENGRVSYGSRVFEAIAHQ----DSV--SWNALFSRFQDYESPDQGLRIFYQMLLKGF-------KPNMCTFIVI 259 (601)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~t~~~l 259 (601)
..-+.+..|+.+++..++...... +.. .-..+.-+.+..|..+++..++.......- .+....-.++
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 344566788888888888877642 211 222334455666666677777776654321 0111112222
Q ss_pred HHHh--cCCCChhHHHHHHHHHHHccCC-CCcchhhHHHHHHHhcCCHHHHHHHHhhCCCC-C--cccHHHHHHHHHhcC
Q 036160 260 LKAC--SSLSDVGFGKQLHAHTIKHSLD-GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK-D--LFAYTAIITSYAQAG 333 (601)
Q Consensus 260 l~~~--~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~ll~~~~~~g 333 (601)
.-+. .-.++- .+...+..+....-. .....--++...+.-.|+.+....++..+.+. + +.-.-.+.-++...|
T Consensus 460 GLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 460 GIGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 2233 333333 334444443332110 00011122333445567766666666554322 1 122233334555778
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHH---HHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 036160 334 EAEMALKCFRKMRLEGIKSNEFTLA---SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410 (601)
Q Consensus 334 ~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 410 (601)
+.+.+..+++.+... ..|. .-|. .+.-+|+..|+.....+++..+.... ..++.....+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 888888888887763 2222 2232 33456888899888888888877642 2233322233333444566677777
Q ss_pred HHcCCC---CCCHhHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCCHhhHH
Q 036160 411 VFKGSA---LRDTASWNMMIGGYVKHGLG-EKALEAFRMMLDEGYVPDEITFV 459 (601)
Q Consensus 411 ~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~ 459 (601)
+++.+. .+.+..-..+.-+....|.. .+++.++..+.. .+|..+-.
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQ 665 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHH
Confidence 776544 23333333344455555554 678888888875 55655433
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.53 E-value=5.7 Score=35.72 Aligned_cols=132 Identities=9% Similarity=0.046 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHH----HHHHHHCCCCCCHhhHHHHHHHhc
Q 036160 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI----FYQMLLKGFKPNMCTFIVILKACS 264 (601)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 264 (601)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++ ++...+.+.+++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555666677888888888886542 3445666776666554 556666788999888888888776
Q ss_pred CCCCh-hHHHHHHHHHHHc----c--CCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 036160 265 SLSDV-GFGKQLHAHTIKH----S--LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331 (601)
Q Consensus 265 ~~~~~-~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 331 (601)
....- ..-.++.+.+++. | ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+..
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 54322 1234455555543 2 123556777888888888888888887753322234444444444333
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.52 E-value=0.96 Score=35.92 Aligned_cols=26 Identities=0% Similarity=-0.180 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHhHhcC
Q 036160 493 HFACMIDILGRAGKFTEIENFITETK 518 (601)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (601)
.-.-+..+|.+.|++++|+.+++.++
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345666677777777777777654
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.50 E-value=0.53 Score=37.38 Aligned_cols=22 Identities=5% Similarity=-0.249 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 036160 527 ENLLGACSWHGNIELDEKDAEK 548 (601)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~ 548 (601)
..+..+|.+.|++++|+..++.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHhc
Confidence 3344555555666666555543
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.32 E-value=2.8 Score=36.44 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=81.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036160 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507 (601)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 507 (601)
..+.+.|+.++|++....-++.. +-|...-..|++-+|-.|+|++|.+-++...+. .|+...-..+...+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 34567899999999998888862 445556667888999999999999999988765 56643322222222222
Q ss_pred HHHH-HHhHh--cC--CCCcHHHHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCcce
Q 036160 508 TEIE-NFITE--TK--LTPNALVWENLLGAC--SWHGNIELDEKDAEKLLELEPKMESNY 560 (601)
Q Consensus 508 ~~A~-~~~~~--~~--~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~ 560 (601)
+..+ ++|.. .+ +.....-...++.+. ...|+.++|..+-.++++..|..+...
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 1222 23332 11 112222334455544 467999999999999999988655533
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.93 E-value=6.8 Score=35.23 Aligned_cols=167 Identities=10% Similarity=0.037 Sum_probs=99.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHH----HHHHHHHcCCCCCHHHHHHHHHhhcCC
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK----CFRKMRLEGIKSNEFTLASCLNGCSPV 367 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~ 367 (601)
.++..-|.+.+++++|.+++.. -...+.+.|+...|.+ +++-..+.+++++......++..+..-
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4556667788888888887533 2344566777766555 456667778999998888887776553
Q ss_pred Cchh-hHHHHHHHHHH----hCC--CCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhC---CChH
Q 036160 368 ATLA-NGRLLHSIAVK----TGH--LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH---GLGE 437 (601)
Q Consensus 368 ~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 437 (601)
..-+ .-.++.+.+++ .|- .-++.....+...|.+.+++.+|+..|--....+...+..++.-+.+. |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3221 22344444443 222 236777888899999999999998876533222344444443333322 2222
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 036160 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 484 (601)
++-- ..-.. +--|.-.|+...|..+++...+.
T Consensus 186 e~dl--------------f~~Ra-VL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TVAE--------------FFSRL-VFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHH-HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHH--------------HHHHH-HHHHHHhcCHHHHHHHHHHHHHH
Confidence 2111 11112 22355678899999998877654
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.51 E-value=0.19 Score=47.59 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 494 FACMIDILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
...++..+.+.|++++|+..+.. +...| +...+..++.++.+.|+..+|.+.|+++.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444555555555555555444 22333 45555555555555555555555555543
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.36 E-value=8.9 Score=35.93 Aligned_cols=55 Identities=5% Similarity=-0.042 Sum_probs=24.3
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHhH
Q 036160 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHFACMIDILGRAGKFTEIENFIT 515 (601)
Q Consensus 461 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 515 (601)
++..|...|++.+|.+++..+.+...-..| .+++..-++.|...|++.++...+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344455555555555555555443111011 2233333444555555555554444
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.72 E-value=10 Score=36.52 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=116.8
Q ss_pred cCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHh-CCCCchh--HHHHHHHHHHhcC
Q 036160 332 AGEAEMALKCFRKMRLE-----GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT-GHLLDMF--VSTALVAMYAKCG 403 (601)
Q Consensus 332 ~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~~ 403 (601)
.|+++.|++.+-.+.+. ...........++..|...++++...+.+..+.+. |..+... ..+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37788998888766543 24556777888899999999999887777666543 3322221 1122233333333
Q ss_pred CHH--HHHHHHcCCC---CC-------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----hhHHHHHHHhh
Q 036160 404 SID--DAEAVFKGSA---LR-------DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-----ITFVVVLSACS 466 (601)
Q Consensus 404 ~~~--~A~~~~~~~~---~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~ 466 (601)
..+ .-..+.+... .. .......|...+...|++.+|..++..+...-...+. ..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333 2233444333 11 1123456778888999999999999888753222222 24666677888
Q ss_pred ccCcHHHHHHHHHHHHHH-hCCCCC----hhHHHHHHHHHHhcCChHHHHHHhHhc
Q 036160 467 HMGLIEEGKKHFSSIKKI-YGITPT----IKHFACMIDILGRAGKFTEIENFITET 517 (601)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (601)
..+++.+|..++.++... +...++ ...+...+..+...+++.+|-+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999887532 122222 235666777888888998888877664
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.67 E-value=2.5 Score=30.11 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHh
Q 036160 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516 (601)
Q Consensus 437 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (601)
=+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+ ..+...+|..+++ +..-.+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq---------ElkPtl~E 95 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTLNE 95 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH---------HHhhHHHH
Confidence 356666677777778899999999999999999999999999988876 3344556766643 44455555
Q ss_pred cC
Q 036160 517 TK 518 (601)
Q Consensus 517 ~~ 518 (601)
++
T Consensus 96 LG 97 (109)
T 1v54_E 96 LG 97 (109)
T ss_dssp HT
T ss_pred hC
Confidence 55
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.16 E-value=13 Score=33.78 Aligned_cols=168 Identities=10% Similarity=0.042 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCHhhHHHHHHHhh
Q 036160 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA----FRMMLDEGYVPDEITFVVVLSACS 466 (601)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 466 (601)
.|.++..-|.+.+++++|.+++.+. ...+.+.|+...|-.+ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666788899999998875432 2345666776655444 466667788898888777777766
Q ss_pred ccCc--HHHHHHHHHHHHH---HhCC--CCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCCh
Q 036160 467 HMGL--IEEGKKHFSSIKK---IYGI--TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539 (601)
Q Consensus 467 ~~~~--~~~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 539 (601)
.... ++. ..+.+++++ ..|- .-|+.....++..|.+.+++.+|...|- ++-.+++..+..++.-+...+..
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 5442 221 223333321 1242 2346777888999999999999998885 34345556666666555554432
Q ss_pred hHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 540 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
.++--++-++ .--|...|+...|...++...+
T Consensus 184 ~e~dlfiaRa--------------VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAPLYCARA--------------VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH--------------HHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222221 1235567788888887766654
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.10 E-value=3.3 Score=39.09 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHH----HhCCCCChhHHHHH
Q 036160 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK----IYGITPTIKHFACM 497 (601)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 497 (601)
..++..+...|++++|+..+..+... -+-+...+..++.++.+.|+..+|.+.|+...+ ..|+.|+..+-...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34566777888899998888888775 244666888889999999999999888887654 34888887655433
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.03 E-value=2.1 Score=44.00 Aligned_cols=52 Identities=13% Similarity=-0.007 Sum_probs=42.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCcHHHHHHHHHHH
Q 036160 428 GGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSI 481 (601)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 481 (601)
.-+...|+++.|+++-++.... .|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456788899999999888875 5654 58999999999999999998888765
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.34 E-value=29 Score=34.85 Aligned_cols=308 Identities=9% Similarity=-0.036 Sum_probs=165.7
Q ss_pred HhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCC-ChhHHhhHHHHhhcCCChhH
Q 036160 26 YAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADN 104 (601)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 104 (601)
..+.|++..+..+...+...-+.|- ..|..+...+. .....++..++ .+..-.| ....-+.-+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~-~~~~~ev~~Fl---~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLM-NQPAVTVTNFV---RANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGG-GCCHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcc-cCCHHHHHHHH---HHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 3567888888887777754322221 24444443332 11333333333 3322122 23444556677778889999
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchh--hHHHHHHHHHC
Q 036160 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG--ESIHAVICKYG 182 (601)
Q Consensus 105 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~ 182 (601)
...++.. ...+...-.....+....|+..+|....+.+-..| ...+..+..++..+.+.|.+... ..=++.+...|
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~ 168 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 9987776 32344444556677888899888888888877665 44556677788887766655432 22222222222
Q ss_pred -----------CCCchh-HHHHHHHHHHhcCCccHHHHHHhhcCCCCcc---cHHHHHHHHhcCCCchhHHHHHHHHHHC
Q 036160 183 -----------FESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSV---SWNALFSRFQDYESPDQGLRIFYQMLLK 247 (601)
Q Consensus 183 -----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 247 (601)
++++.. ....++..+ .+...+....... .++.. .+..-+.-+.+ .+.+.|...+......
T Consensus 169 ~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~ 243 (618)
T 1qsa_A 169 NTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQA 243 (618)
T ss_dssp CHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhc
Confidence 111111 111111111 1223333333222 11111 11112233333 3778999999888654
Q ss_pred C-CCCCHh--hHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCCCc--ccH
Q 036160 248 G-FKPNMC--TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL--FAY 322 (601)
Q Consensus 248 g-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 322 (601)
. ..+... ....+.......+....+...+....... .+.....-.+....+.|+++.|...|..+..... .-|
T Consensus 244 ~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~ 321 (618)
T 1qsa_A 244 QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEW 321 (618)
T ss_dssp TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhH
Confidence 3 222221 22233334445553555666666544332 3333344455556678999999999999987422 111
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHH
Q 036160 323 -TAIITSYAQAGEAEMALKCFRKMRL 347 (601)
Q Consensus 323 -~~ll~~~~~~g~~~~a~~~~~~m~~ 347 (601)
-=+..++...|+.++|..+|..+..
T Consensus 322 ~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 1134466788999999999999864
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.46 E-value=7.4 Score=27.75 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=41.6
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHH
Q 036160 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195 (601)
Q Consensus 132 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 195 (601)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++..- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 334556666666666777888888888888888888888888887776552 222344555443
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.30 E-value=6.3 Score=29.84 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhc
Q 036160 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (601)
+..+-++.+....+.|++......+++|-+.+|+..|.++++.++.+ ..+...+|..+++ +-.-.++++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq---------ElkPtl~EL 139 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH---------HHhhHHHHh
Confidence 45556666666778899999999999999999999999999998876 3444556766643 445556665
Q ss_pred C
Q 036160 518 K 518 (601)
Q Consensus 518 ~ 518 (601)
+
T Consensus 140 G 140 (152)
T 2y69_E 140 G 140 (152)
T ss_dssp T
T ss_pred C
Confidence 5
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.73 E-value=0.76 Score=39.88 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=48.0
Q ss_pred HHHHhcCChHHHHHHhHh-cCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036160 499 DILGRAGKFTEIENFITE-TKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556 (601)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 556 (601)
..+.+.|++++|++.+.. +...| |...-..++..++-.|++++|.+-++-+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 456788999999988876 55567 77778888899999999999999999999999953
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.27 E-value=26 Score=38.56 Aligned_cols=164 Identities=16% Similarity=0.035 Sum_probs=90.1
Q ss_pred hhHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCch
Q 036160 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370 (601)
Q Consensus 291 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 370 (601)
...++..+...+..+.+.++..-... ++..--.+..+|...|++++|.+.|.+... |+..+... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l----------~~~- 881 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ----------FAV- 881 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS----------CSS-
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh----------hhh-
Confidence 34566667777888877776655543 444444566778899999999999976421 22111000 000
Q ss_pred hhHHHHHHHHHHh-CC-CCchhHHHHHHHHHHhcCCHHHHHHHHcC----CCCCC----HhHHHHHHHHHHhCCChHHHH
Q 036160 371 ANGRLLHSIAVKT-GH-LLDMFVSTALVAMYAKCGSIDDAEAVFKG----SALRD----TASWNMMIGGYVKHGLGEKAL 440 (601)
Q Consensus 371 ~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~ 440 (601)
..-+..+... .. ..-..-|.-++..+.+.+.++.+.++-+. ....+ ...|..++..+...|++++|.
T Consensus 882 ---~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 882 ---LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp ---HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred ---hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 0001111111 00 11223455566666666666666554431 11111 125777888888888888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHhhccCcHH
Q 036160 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472 (601)
Q Consensus 441 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 472 (601)
..+-.+..... -...+..|+..+|..|..+
T Consensus 959 ~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 959 VALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 88877765432 2345666666666555443
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.45 E-value=20 Score=29.83 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHH
Q 036160 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245 (601)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 245 (601)
++..+-...+.++.+.+..+....+.+.+.+++...-...+.++.+.+. ..+...+..+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 4444445555555555554433333333334444444444444444443 33444444443
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.40 E-value=11 Score=26.71 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=63.0
Q ss_pred cCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHH
Q 036160 64 SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143 (601)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 143 (601)
..+.++|.-+-+.+...+. ...+-.+-+..+...|++++|..+.+....||..+|-+|-. .+.|-.+++..-+..+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3466788888887776553 33333344456778899999999999999999999887754 5778888888888777
Q ss_pred HHcCCCCChhhHH
Q 036160 144 RESSVKPNQFVLT 156 (601)
Q Consensus 144 ~~~~~~p~~~~~~ 156 (601)
..+| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7765 44444443
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.16 E-value=59 Score=35.82 Aligned_cols=80 Identities=5% Similarity=-0.023 Sum_probs=44.3
Q ss_pred hHHHHHHHHhccCCcchhhHHHHHHHHHCCCCch----hHHHHHHHHHHhcCCccHHHHHHhhcCCCCc--ccHHHHHHH
Q 036160 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDT----LVGNALVSMYMENGRVSYGSRVFEAIAHQDS--VSWNALFSR 227 (601)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~ 227 (601)
-|..++..+.+.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.+++... .....++..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3566666666667777666666665554322221 2466667777777777777666655543221 233444444
Q ss_pred HhcCCC
Q 036160 228 FQDYES 233 (601)
Q Consensus 228 ~~~~~~ 233 (601)
++..+.
T Consensus 981 lce~~~ 986 (1139)
T 4fhn_B 981 LTKQGK 986 (1139)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 444443
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.87 E-value=30 Score=31.38 Aligned_cols=166 Identities=10% Similarity=0.058 Sum_probs=99.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHH----HHHHHHHcCCCCCHHHHHHHHHhhcCC
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK----CFRKMRLEGIKSNEFTLASCLNGCSPV 367 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~ 367 (601)
.++..-|.+.+++++|.+++.. -...+.+.|+...|.+ +++-..+.+++++..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 4556667888888888887533 2334566677665544 446667788999998888888777665
Q ss_pred Cchhh-HHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHH
Q 036160 368 ATLAN-GRLLHSIAVK----TG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440 (601)
Q Consensus 368 ~~~~~-a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 440 (601)
..-+- -..+.+.+++ .| ..-++.....+...|.+.+++.+|+..|--...+.+..+..++.-+.+.+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e-- 185 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT-- 185 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--
Confidence 53221 1233333332 33 234677778889999999999999888753333333455444433333322111
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHH
Q 036160 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483 (601)
Q Consensus 441 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 483 (601)
++...-.. +--|.-.++...|..+++...+
T Consensus 186 ------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ------------APLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 11112222 2235567888888887777654
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.83 E-value=12 Score=26.63 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=62.2
Q ss_pred cCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHHHhcCChhHHHHHHHHH
Q 036160 64 SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143 (601)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 143 (601)
..+.++|.-+-+.+...+. ...+-.+-+..+...|++++|..+.+....||...|-+|-. .+.|-.+++..-+..+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3466788888887776553 33333344456778899999999999999999999987755 4678888888777777
Q ss_pred HHcCCCCChhhH
Q 036160 144 RESSVKPNQFVL 155 (601)
Q Consensus 144 ~~~~~~p~~~~~ 155 (601)
..+| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 4444444
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.45 E-value=14 Score=26.16 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=44.0
Q ss_pred HHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhH
Q 036160 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 458 (601)
..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34667899999999999998999988877754 47777777777777777765 4444333
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.58 E-value=15 Score=26.04 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=41.5
Q ss_pred HHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhH
Q 036160 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458 (601)
Q Consensus 397 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 458 (601)
..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..+| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34667888999999888888888888877754 35676677777776776655 4433333
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.53 E-value=8.1 Score=36.97 Aligned_cols=95 Identities=14% Similarity=-0.035 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHcCCC------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHhhHH--
Q 036160 391 VSTALVAMYAKCGSIDDAEAVFKGSA------LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE---GYVPDEITFV-- 459 (601)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~-- 459 (601)
+...+.+.|.+.|+++.|.+.+.++. ..-...+-..++.+...+++..+...+++.... +-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45678888888999998888887654 223456777788888888888888888877542 2222222111
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHh
Q 036160 460 VVLSACSHMGLIEEGKKHFSSIKKIY 485 (601)
Q Consensus 460 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 485 (601)
.-...+...+++..|.+.|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11223456778888888888887663
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.73 E-value=13 Score=28.20 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHH
Q 036160 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195 (601)
Q Consensus 134 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 195 (601)
-+..+-++.+...++.|++......+++|.+.+|+..|.++++-++..- .+...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455666666677788888888888888888888888888888776652 333445655543
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.75 E-value=35 Score=28.17 Aligned_cols=83 Identities=11% Similarity=0.086 Sum_probs=54.5
Q ss_pred HHHHHHHcCCC--CCCHh---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHH
Q 036160 406 DDAEAVFKGSA--LRDTA---SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFS 479 (601)
Q Consensus 406 ~~A~~~~~~~~--~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~ 479 (601)
+++.+.|.... ..|+. .|-..+..+ ..+....+..+|..|...|+--... .|......+...|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445554433 33443 344444433 2344668888999998888776654 56677777888899999999988
Q ss_pred HHHHHhCCCCC
Q 036160 480 SIKKIYGITPT 490 (601)
Q Consensus 480 ~~~~~~~~~p~ 490 (601)
.-++. +-.|-
T Consensus 140 ~GI~~-~A~P~ 149 (202)
T 3esl_A 140 LGAEN-NCRPY 149 (202)
T ss_dssp HHHHT-TCBSH
T ss_pred HHHHc-CCccH
Confidence 88776 55664
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.55 E-value=34 Score=28.07 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCCcccHHHHHHHHh
Q 036160 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229 (601)
Q Consensus 150 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 229 (601)
++...-...+.++...++.+....+.+ +. -.++..+-...+.++.+.++.+....+.+.+.+++...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444455555555444332222222 21 13444455555555555555443333334344444444444444444
Q ss_pred cCCCchhHHHHHHHHH
Q 036160 230 DYESPDQGLRIFYQML 245 (601)
Q Consensus 230 ~~~~~~~a~~~~~~m~ 245 (601)
..|. .++...+..+.
T Consensus 164 ~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 164 EIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHCS-HHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHH
Confidence 4443 33444444433
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.00 E-value=23 Score=33.76 Aligned_cols=94 Identities=6% Similarity=-0.156 Sum_probs=66.7
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHcCCC-----CCCHhHHHHH--
Q 036160 356 TLASCLNGCSPVATLANGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-----LRDTASWNMM-- 426 (601)
Q Consensus 356 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l-- 426 (601)
+...+..-+.+.|+++.|.+.+..+.... ...-...+-.++..+...+++..+...+++.. .++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567778889999999999999988753 33345677788888999999998887776542 2233333322
Q ss_pred --HHHHHhCCChHHHHHHHHHHHHc
Q 036160 427 --IGGYVKHGLGEKALEAFRMMLDE 449 (601)
Q Consensus 427 --~~~~~~~~~~~~A~~~~~~m~~~ 449 (601)
...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 23345678899999988877654
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.15 E-value=9.2 Score=35.16 Aligned_cols=247 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhc
Q 036160 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200 (601)
Q Consensus 121 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (601)
..+|.-|...++.++|...++++......|.......-...=.+...-+.+-.++..+.. ++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CCc--------cHHHHHHhhcCCCCcccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCCChhHH
Q 036160 201 GRV--------SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272 (601)
Q Consensus 201 ~~~--------~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 272 (601)
.+. +..-.++.++...+....+.+-. +...-.-..+.+.++..... --..+....+-+.+...+.....
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~-~~~~~~~~~~~~~l~~a~~~--L~~~~~~~~~~~~WG~g~~~~~v 213 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDS-YKGTVDCVQARAALDKATVL--LSMSKGGKRKDSVWGSGGGQQPV 213 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGG-GC---CCHHHHHHHHHHHHH--HTC---------CCCCCCSSSCH
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHH-HhhcccchHHHHHHHHHHHH--HhccchHHHHHHhcCCCCCCccH
Q ss_pred HHHHHHHHHccCCCCcchhhHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 036160 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK---DLFAYTAIITSYAQAG--EAEMALKCFRKMRL 347 (601)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~ 347 (601)
.++-+.+ ..++.-|...|+.++|...++++..| .......+..++-+.+ ..+...+++..+..
T Consensus 214 eelkkki------------~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 214 NHLVKEI------------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp HHHHHHH------------HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Q ss_pred cCCCCCHHHHHHHHHhhcCCC----chhhHHHHHHHHHHh
Q 036160 348 EGIKSNEFTLASCLNGCSPVA----TLANGRLLHSIAVKT 383 (601)
Q Consensus 348 ~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~ 383 (601)
.|+-+.......+...+.... +...|..++..+...
T Consensus 282 ~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 282 SSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHH
No 275
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.88 E-value=71 Score=30.54 Aligned_cols=195 Identities=11% Similarity=-0.005 Sum_probs=110.8
Q ss_pred CCHHHHHHHHhhCCC-----CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhc----CCC
Q 036160 302 GCLEDAGVAFDSLAN-----KD----LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS----PVA 368 (601)
Q Consensus 302 ~~~~~a~~~~~~~~~-----~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~ 368 (601)
|+++.|.+.+-.+.+ .| ......++..|...|+++...+.+.-+....-.. ......++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 678888777655432 22 2335667888899999999888777665443222 222233333322 222
Q ss_pred chhhHHHHHHHHHHh--CCC-----C---chhHHHHHHHHHHhcCCHHHHHHHHcCCC----CC-----CHhHHHHHHHH
Q 036160 369 TLANGRLLHSIAVKT--GHL-----L---DMFVSTALVAMYAKCGSIDDAEAVFKGSA----LR-----DTASWNMMIGG 429 (601)
Q Consensus 369 ~~~~a~~~~~~~~~~--~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~-----~~~~~~~l~~~ 429 (601)
..+.. ........ .+. . .......|...|...|++.+|..++..+. .. -+..+..-++.
T Consensus 109 ~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22111 11111111 111 1 22344568889999999999999887654 11 13456667888
Q ss_pred HHhCCChHHHHHHHHHHHHc--CCCCCH----hhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 036160 430 YVKHGLGEKALEAFRMMLDE--GYVPDE----ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503 (601)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~--~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 503 (601)
|...+++.+|..+++++... ...+++ ..+...+..+...+++.+|-+.| ..+...+..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y----------------~e~~~~~~~ 250 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL----------------QEIYQTDAI 250 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------------HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH----------------HHHHhcccc
Confidence 99999999999999887531 112222 13444455566667777665543 334455556
Q ss_pred cCChHHHHHHhH
Q 036160 504 AGKFTEIENFIT 515 (601)
Q Consensus 504 ~g~~~~A~~~~~ 515 (601)
.++.......+.
T Consensus 251 ~~d~~~~~~~L~ 262 (445)
T 4b4t_P 251 KSDEAKWKPVLS 262 (445)
T ss_dssp HSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 666555444444
No 276
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=71.23 E-value=51 Score=29.55 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=44.1
Q ss_pred HHhHhcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 512 NFITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 512 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
.+|....+.| -..++...+..+.+.+|+..|..+.++++++.|+ ....++|++++..-.+
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKNKADS 255 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHHHHHT
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHhc
Confidence 3455555666 3557788888999999999999999999999994 1234567777765543
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=70.58 E-value=33 Score=30.33 Aligned_cols=20 Identities=0% Similarity=-0.089 Sum_probs=10.3
Q ss_pred HHHHhhcCCChhHHHHHHhc
Q 036160 92 LVDMYSKCGLADNALKVFYR 111 (601)
Q Consensus 92 l~~~~~~~~~~~~A~~~~~~ 111 (601)
.+...+..|+.+-+.-+++.
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34444455565555555554
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.79 E-value=14 Score=30.41 Aligned_cols=50 Identities=18% Similarity=0.021 Sum_probs=36.3
Q ss_pred cCChHHHHHHhHhc---CC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 504 AGKFTEIENFITET---KL-TPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 504 ~g~~~~A~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
.+...++.++|.-| ++ .--...|......+...|++++|.++++..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44355666665542 22 4467788888888899999999999999999854
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.07 E-value=60 Score=28.18 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=8.9
Q ss_pred HHHHHhhCCChhhHHHHH
Q 036160 22 LLNGYAESGDGQKVMHLF 39 (601)
Q Consensus 22 li~~~~~~~~~~~a~~~~ 39 (601)
.+...++.|+.+....++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344445666655444433
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.96 E-value=64 Score=28.03 Aligned_cols=53 Identities=8% Similarity=-0.067 Sum_probs=25.1
Q ss_pred HHHHHHhccCchhhhHHHHHHHHHhcCCCChh---HHhhHHHHhhcCCChhHHHHHHhcC
Q 036160 56 TVLKGFANSGYIKAGQVVHAMAIRLGCALDKF---LSCSLVDMYSKCGLADNALKVFYRI 112 (601)
Q Consensus 56 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~ 112 (601)
+.+...++.|+.+.+..+ .+.|..++.. .-...+...+..|+.+-+.-+++.-
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 344555566665544433 3444433321 1123344445556666655555543
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.83 E-value=50 Score=27.89 Aligned_cols=88 Identities=9% Similarity=0.004 Sum_probs=48.8
Q ss_pred HHHHHhhCCChhhHHHHHHhhhhcCCCCCcch--HHHHHHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhh
Q 036160 22 LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFS--LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYS 97 (601)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 97 (601)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++.. .-...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34445677888888888887766665544321 223344445566654 444555566554432 1123344445
Q ss_pred cCCChhHHHHHHhcCC
Q 036160 98 KCGLADNALKVFYRIK 113 (601)
Q Consensus 98 ~~~~~~~A~~~~~~~~ 113 (601)
..|+.+-+..+++...
T Consensus 88 ~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAA 103 (241)
T ss_dssp HTTCHHHHHHHHHHSC
T ss_pred HcCCHHHHHHHHHcCC
Confidence 5677776666666543
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=66.04 E-value=24 Score=30.53 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=49.8
Q ss_pred HHHHhhCCChhhHHHHHHhhhhcCCCCCcch-------HHHHHHHHh--ccCchhhhHHHHHHHHHhc-------CCCCh
Q 036160 23 LNGYAESGDGQKVMHLFCSMKDMEKKFSKFS-------LSTVLKGFA--NSGYIKAGQVVHAMAIRLG-------CALDK 86 (601)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-------~~~~~ 86 (601)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ ...+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 4445678888888888887777665555332 233443332 5677777766666543311 00000
Q ss_pred --hHHhhHHHHhhcCCChhHHHHHHhcCCC
Q 036160 87 --FLSCSLVDMYSKCGLADNALKVFYRIKD 114 (601)
Q Consensus 87 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 114 (601)
..-.+.+...+..|+.+-+.-+++.-..
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 0112233444456777766666665443
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=61.62 E-value=60 Score=32.85 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=39.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh---
Q 036160 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK--- 401 (601)
Q Consensus 325 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 401 (601)
....+.-.|+++.|++.+-.. ...+.+++...+..+.-.+- . +.+..........-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---D----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---C----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 345556688888888877644 34556666666655433332 1 111110000012224556666654
Q ss_pred cCCHHHHHHHHcCCC
Q 036160 402 CGSIDDAEAVFKGSA 416 (601)
Q Consensus 402 ~~~~~~A~~~~~~~~ 416 (601)
..+..+|.++|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 467777777665443
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.19 E-value=57 Score=25.49 Aligned_cols=53 Identities=8% Similarity=0.095 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC
Q 036160 437 EKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490 (601)
Q Consensus 437 ~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 490 (601)
+.+..+|..|...|+--... .|......+...|++.+|.++|+.-++. +-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 33778888888877666544 5666677777788888888888877765 55553
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=60.68 E-value=34 Score=27.90 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=34.3
Q ss_pred hHHHHHHhHhcCCCCcH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCCh
Q 036160 507 FTEIENFITETKLTPNA-------LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRW 573 (601)
Q Consensus 507 ~~~A~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 573 (601)
++.|+.+|+.+.-.-+. ..-...+..|.+.|.+++|.+++++.....|.+...-.-|..+-.....+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~ 167 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTF 167 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCC
Confidence 35567777765522221 11123345678888888888888887776665544444444443333333
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.48 E-value=74 Score=26.23 Aligned_cols=150 Identities=17% Similarity=0.039 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCc
Q 036160 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470 (601)
Q Consensus 391 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 470 (601)
+-...+..+.+.+..+....+.+.+..++...-...+.++.+.++. .+...+.++.. .++...-...+.++.+.++
T Consensus 35 vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 35 VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 3333444444444433333344444445555555555555555543 23333333332 3555555555556666555
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036160 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550 (601)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (601)
.+ +...+..+. -.++..+-...+.++.+.|..+ +...+.++-..++...-...+.++.+.++ +.+...+.+++
T Consensus 111 ~~-~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 111 ER-AVEPLIKAL----KDEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp GG-GHHHHHHHT----TCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HH-HHHHHHHHH----hCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 33 222222222 2455555566666666666643 33444432236666666666666666665 34555555555
Q ss_pred h
Q 036160 551 E 551 (601)
Q Consensus 551 ~ 551 (601)
+
T Consensus 184 ~ 184 (211)
T 3ltm_A 184 E 184 (211)
T ss_dssp H
T ss_pred h
Confidence 4
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.12 E-value=80 Score=26.53 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=43.9
Q ss_pred HHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhhcCCChhHHHHHHhcCCCC---CccchHHHHHHHHhcCC
Q 036160 58 LKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDP---DVVAWGAIITCLDQQGC 132 (601)
Q Consensus 58 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 132 (601)
+...+..|+.+.+..+++.+.+.+..++.. .-...+...+..|+.+-+..+++.-..+ +..-++.+ ...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA-HLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCC
Confidence 445556788888888887776666554432 1223344455567776666666544332 22223333 33345565
Q ss_pred hhHHHHHHH
Q 036160 133 CQEAAKIFN 141 (601)
Q Consensus 133 ~~~a~~~~~ 141 (601)
.+-+..+++
T Consensus 92 ~~~~~~Ll~ 100 (241)
T 1k1a_A 92 PTCLRALLD 100 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444433
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=56.97 E-value=86 Score=26.22 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=34.6
Q ss_pred HhhCCChhhHHHHHHhhhhcCCCCCcc--hHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhH---HhhHHHHhhcCC
Q 036160 26 YAESGDGQKVMHLFCSMKDMEKKFSKF--SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFL---SCSLVDMYSKCG 100 (601)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 100 (601)
.++.|+.+....+++ .|..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -...+...+..|
T Consensus 16 A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 356677655555444 33333221 1223444555556654 3344444444332111 122333444456
Q ss_pred ChhHHHHHHhc
Q 036160 101 LADNALKVFYR 111 (601)
Q Consensus 101 ~~~~A~~~~~~ 111 (601)
+.+-+..+++.
T Consensus 88 ~~~~v~~Ll~~ 98 (240)
T 3eu9_A 88 HLSMVVQLMKY 98 (240)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 65555555544
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.57 E-value=19 Score=32.35 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=41.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHH
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLANKDL---FAYTAIITSYAQAGE--AEMALKCFRKMRLEGIKSNEFT 356 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 356 (601)
..++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4577788888999999999999877621 223333334333322 3456778888887776555443
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.22 E-value=31 Score=26.99 Aligned_cols=49 Identities=8% Similarity=0.167 Sum_probs=28.0
Q ss_pred CChHHHHHHhHhcCC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 505 GKFTEIENFITETKL-TPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 505 g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
.+..+...++..-++ .--...|......+...|++++|.++++..++..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 343334444333222 3345666666666777777777777777777643
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.89 E-value=32 Score=33.40 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=11.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHH
Q 036160 458 FVVVLSACSHMGLIEEGKKHFSS 480 (601)
Q Consensus 458 ~~~l~~~~~~~~~~~~a~~~~~~ 480 (601)
++.+++.|...+.++.|..+..+
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhc
Confidence 44444445555555555554443
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.61 E-value=61 Score=29.04 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHcCCCCCC---HhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 036160 393 TALVAMYAKCGSIDDAEAVFKGSALRD---TASWNMMIGGYVKHGL--GEKALEAFRMMLDEGYVPD 454 (601)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 454 (601)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+...+++..+.+.|+-+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 457778888899999999999988663 2234444444444333 3456677777777665443
No 293
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.25 E-value=1.9e+02 Score=29.20 Aligned_cols=39 Identities=5% Similarity=-0.009 Sum_probs=23.8
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCC
Q 036160 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266 (601)
Q Consensus 224 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 266 (601)
....+.-.|+++.|++.+... ...+..++.+.+..+.-.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL 338 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLF 338 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCc
Confidence 445566677888888776643 345666666666655433
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.93 E-value=84 Score=24.92 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC
Q 036160 438 KALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490 (601)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 490 (601)
.+..+|..|...|+--... .|......+...|++.+|.++|+.-++. +-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 3667788888877766544 5666666777788888888888877776 55564
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=52.56 E-value=45 Score=28.73 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=30.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhh-------HHHHHHHHh--ccCCcchhhHHHHHH
Q 036160 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFV-------LTSLVRATT--ETGDQRCGESIHAVI 178 (601)
Q Consensus 124 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 178 (601)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344567777777777777766665555332 233333321 556666555555543
No 296
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.37 E-value=1.2e+02 Score=26.42 Aligned_cols=19 Identities=0% Similarity=-0.114 Sum_probs=8.7
Q ss_pred CCCcccHHHHHHHHhcCCC
Q 036160 215 HQDSVSWNALFSRFQDYES 233 (601)
Q Consensus 215 ~~~~~~~~~li~~~~~~~~ 233 (601)
+++...-...+.++.+.|+
T Consensus 203 d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 3444444444445555553
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.05 E-value=53 Score=24.79 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=40.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHH
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLANKDL---FAYTAIITSYAQAGE--AEMALKCFRKMRLEGIKSNEF 355 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 355 (601)
..++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5577778888999999999888876521 223333344444332 356777888887777655443
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.17 E-value=72 Score=24.95 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCCCCC---HhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCC
Q 036160 392 STALVAMYAKCGSIDDAEAVFKGSALRD---TASWNMMIGGYVKHGL--GEKALEAFRMMLDEGYVP 453 (601)
Q Consensus 392 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p 453 (601)
...++.-|...++.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3567788888899999999999887663 2234444455554332 345677777777666444
No 299
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.92 E-value=88 Score=25.97 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhCCCCC-hhHHH-----HHHHHHHhcCChHHHHHHhHh-cCCCCcHHHHH
Q 036160 471 IEEGKKHFSSIKKIYGITPT-IKHFA-----CMIDILGRAGKFTEIENFITE-TKLTPNALVWE 527 (601)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~ 527 (601)
.+.|+.+|+.+.+...+..+ ..... ..+..|.+.|.+++|.+++++ ++-.|+...+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr 151 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLR 151 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHH
Confidence 34566666666554221111 11111 223456677777777777777 44344444333
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.77 E-value=71 Score=25.92 Aligned_cols=50 Identities=6% Similarity=-0.017 Sum_probs=23.6
Q ss_pred hcCCChhHHHHHHhcCC-C---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036160 97 SKCGLADNALKVFYRIK-D---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151 (601)
Q Consensus 97 ~~~~~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 151 (601)
+..|+.+....++..-. . .+..-++.|.. .++.|+. ++++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp HHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTT
T ss_pred HHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCC
Confidence 44566666666665544 2 22223333333 3344553 34444455555443
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.72 E-value=19 Score=34.91 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhHhcCCCCc----H---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 036160 491 IKHFACMIDILGRAGKFTEIENFITETKLTPN----A---LVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558 (601)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 558 (601)
...++.+++.|...+.++.|..++.+..++.+ . ..+..++..+.-.+++.+|.+.+..++...|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 45678888889999999999999998653322 1 12233456667888999999999999988886543
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.31 E-value=82 Score=23.74 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHcCCCCCC---HhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 036160 393 TALVAMYAKCGSIDDAEAVFKGSALRD---TASWNMMIGGYVKHGL--GEKALEAFRMMLDEGYVPD 454 (601)
Q Consensus 393 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 454 (601)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+.+++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567788888899999999999887662 2234444445554432 3566777777777665443
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.51 E-value=82 Score=26.88 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=16.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHhH
Q 036160 488 TPTIKHFACMIDILGRAGKFTEIENFIT 515 (601)
Q Consensus 488 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 515 (601)
.++.......+..+.+.|+.++|.++|=
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 3344445555566667777777666654
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.48 E-value=54 Score=27.98 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=14.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 036160 124 ITCLDQQGCCQEAAKIFNLMRE 145 (601)
Q Consensus 124 i~~~~~~~~~~~a~~~~~~m~~ 145 (601)
++.+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666777777777666543
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=46.07 E-value=54 Score=22.10 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=39.7
Q ss_pred HhhhhcCCCCCcchHHHHHHHHhccC-chhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC
Q 036160 40 CSMKDMEKKFSKFSLSTVLKGFANSG-YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101 (601)
Q Consensus 40 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (601)
+.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566676665433 45566666554 567788888888777666666666666776666554
No 306
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=46.02 E-value=91 Score=26.14 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=36.8
Q ss_pred HHHHhhCCChhhHHHHHHhhhhcCCCCCcch--HHHHHHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhhc
Q 036160 23 LNGYAESGDGQKVMHLFCSMKDMEKKFSKFS--LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSK 98 (601)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 98 (601)
+...+..|+.+.+ +.+.+.|..++... -.+.+...+..|+.+. ++.+.+.|..++.. .-...+...+.
T Consensus 15 L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 15 LHAAAEAGHVDIC----HMLVQAGANIDTCSEDQRTPLMEAAENNHLEA----VKYLIKAGALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCcHHHH----HHHHHcCCCcCccCCCCCCHHHHHHHhCCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence 3444566776543 44444454443221 1123334445555543 33444445443321 11223334445
Q ss_pred CCChhHHHHHHhcC
Q 036160 99 CGLADNALKVFYRI 112 (601)
Q Consensus 99 ~~~~~~A~~~~~~~ 112 (601)
.|+.+-+..+++.-
T Consensus 87 ~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 87 KGHYEVVQYLLSNG 100 (237)
T ss_dssp TTCHHHHHHHHTTT
T ss_pred cCCHHHHHHHHhCC
Confidence 56666666666553
No 307
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=45.87 E-value=24 Score=34.30 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=33.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHH
Q 036160 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582 (601)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 582 (601)
|+....-...++.|...|.++..+.|++...|..||.+....|+.-+|.-+|-+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 334444445556677777777777777777777777766666666666555443
No 308
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.39 E-value=2e+02 Score=27.04 Aligned_cols=330 Identities=10% Similarity=0.087 Sum_probs=142.9
Q ss_pred HHHHhhCCChhhHHHHHHhhhhcCCCCCcc--hHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhhc
Q 036160 23 LNGYAESGDGQKVMHLFCSMKDMEKKFSKF--SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSK 98 (601)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 98 (601)
+..-+..|+.+-+..+++ .|..|+.. ...+.+...+..|+.+-+.. +.+.|..++.. .-...+...+.
T Consensus 18 L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHH
Confidence 444466677665555544 34444322 12234445556666554443 34445443321 12233444556
Q ss_pred CCChhHHHHHHhcCCCCC---ccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCCcchhhH
Q 036160 99 CGLADNALKVFYRIKDPD---VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV--LTSLVRATTETGDQRCGES 173 (601)
Q Consensus 99 ~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~ 173 (601)
.|+.+-+.-+++.-..++ ...++.| ...+..|+.+-+..++ +.+..++... -.+.+...+..|+.+
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~---- 160 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVR---- 160 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHH----
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHH----
Confidence 677776666666544332 2223333 3344556655444443 3333222111 112333444555543
Q ss_pred HHHHHHHHCCCCchh--HHHHHHHHHHhcCCccHHHHHHhhcCCCCcc---cHHHHHHHHhcCCCchhHHHHHHHHHHCC
Q 036160 174 IHAVICKYGFESDTL--VGNALVSMYMENGRVSYGSRVFEAIAHQDSV---SWNALFSRFQDYESPDQGLRIFYQMLLKG 248 (601)
Q Consensus 174 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g 248 (601)
+.+.+.+.|..++.. .-.+.+...+..|+.+-+.-+++.-..++.. .++. +...+..|+.+ +++.+.+.|
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g 235 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVE----VARSLLQYG 235 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHH----HHHHHHHTT
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHHcC
Confidence 444455555544322 1122344445666766555555544332221 1222 23334455543 333444444
Q ss_pred CCCCH---hhHHHHHHHhcCCCChhHHHHHHHHHHHccCCCCcc--hhhHHHHHHHhcCCHHHHHHHHhhCCCC---Ccc
Q 036160 249 FKPNM---CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV--VGTSLVDMYDKSGCLEDAGVAFDSLANK---DLF 320 (601)
Q Consensus 249 ~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 320 (601)
..++. ...+. +...+..|+.+.+..+ .+.+..++.. .-.+.+...+..|+.+-+..+++.-... +..
T Consensus 236 ~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 310 (437)
T 1n11_A 236 GSANAESVQGVTP-LHLAAQEGHAEMVALL----LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310 (437)
T ss_dssp CCTTCCCTTCCCH-HHHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred CCCCCCCCCCCCH-HHHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCC
Confidence 33322 11222 2333445555444333 3344333221 1122344455667777666666643322 222
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCch
Q 036160 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF---TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389 (601)
Q Consensus 321 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 389 (601)
.++.+ ...+..|+.+- ++.+.+.|..++.. -.+.+..+ ...|+. ++.+.+.+.|..|+.
T Consensus 311 g~t~L-~~A~~~g~~~~----v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~----~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 311 GYTPL-HVASHYGNIKL----VKFLLQHQADVNAKTKLGYSPLHQA-AQQGHT----DIVTLLLKNGASPNE 372 (437)
T ss_dssp CCCHH-HHHHHSSCSHH----HHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCH----HHHHHHHHTTCCSCC
T ss_pred CCCHH-HHHHHcCcHHH----HHHHHhcCCCCCCCCCCCCCHHHHH-HHCChH----HHHHHHHHCcCCCCC
Confidence 23333 33345666543 33344455444321 12222222 233443 345555566665543
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.24 E-value=1.1e+02 Score=26.91 Aligned_cols=136 Identities=10% Similarity=-0.024 Sum_probs=64.1
Q ss_pred HHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhhcCC
Q 036160 23 LNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCG 100 (601)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 100 (601)
+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 444466777765555544 45444443334455666677776544 4444556655432 1112333444566
Q ss_pred ChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCCcch
Q 036160 101 LADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF-VLTSLVRATTETGDQRC 170 (601)
Q Consensus 101 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 170 (601)
+.+-+.-+++.-.. .+..-|.+.+...+..|+.+ +++.+.+.|..+... .-.+.+...+..|+.+-
T Consensus 107 ~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp CHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 76666666655332 22223234444445555543 334444444333111 22333344444455443
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.64 E-value=47 Score=25.99 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=40.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHH
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLANKDL---FAYTAIITSYAQAGE--AEMALKCFRKMRLEGIKSNEF 355 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 355 (601)
..++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5677778888999999998888876521 223333344444322 345677777787777555443
No 311
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=42.80 E-value=1.3e+02 Score=24.31 Aligned_cols=153 Identities=16% Similarity=0.037 Sum_probs=84.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHcCCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc
Q 036160 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467 (601)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 467 (601)
+..+-...+..+.+.+..+....+.+.+..++...-...+.++...++. .+...+.++.. .|+...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333344444555555544444444444455665555566666666654 33444444443 4566666666666666
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhHhcCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 036160 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547 (601)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 547 (601)
.++.+ +...+..+. -.++..+-...+.++.+.|..+ +...+.++-..++...-...+.++.+.|+. ++...+.
T Consensus 103 ~~~~~-~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-~~~~~L~ 175 (201)
T 3ltj_A 103 IGDER-AVEPLIKAL----KDEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGGE-RVRAAME 175 (201)
T ss_dssp HCCGG-GHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-HHHHHHH
T ss_pred hCcHH-HHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 66643 333332222 2456666666777777777643 444444433367777777777777777653 4556666
Q ss_pred HHHh
Q 036160 548 KLLE 551 (601)
Q Consensus 548 ~~~~ 551 (601)
.+++
T Consensus 176 ~~l~ 179 (201)
T 3ltj_A 176 KLAE 179 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5553
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.12 E-value=95 Score=24.54 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=51.2
Q ss_pred hhhHHHHHH-hhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHh--cCCCChhHHhhHHHHhhcCCChh
Q 036160 32 GQKVMHLFC-SMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRL--GCALDKFLSCSLVDMYSKCGLAD 103 (601)
Q Consensus 32 ~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 103 (601)
.+.+++-+. .+++.|++++. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344555444 45667877754 4567778888888899999999999988 77777766666677777777543
No 313
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.12 E-value=1.3e+02 Score=27.43 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=8.0
Q ss_pred HHhcCCccHHHHHHhh
Q 036160 197 YMENGRVSYGSRVFEA 212 (601)
Q Consensus 197 ~~~~~~~~~a~~~~~~ 212 (601)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445555555555543
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.01 E-value=75 Score=25.20 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHhcCCCC-hhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHH
Q 036160 68 KAGQVVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127 (601)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 127 (601)
+...++|..|...|+... ...|..-...+-..|++.+|.++|+.-.+..+.....|-..+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~ 137 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQH 137 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 446677888877776543 456666666677778888888888776665555555555443
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.78 E-value=1.4e+02 Score=24.10 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=69.9
Q ss_pred HHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhH--HhhHHHHhhcCCCh
Q 036160 25 GYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFL--SCSLVDMYSKCGLA 102 (601)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 102 (601)
..+..|+.+....+++.-...--..+..-++ .+...+..|+.+ +.+.+.+.|..++... -...+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3366778877777775433110011222222 333444556644 4455555566554321 12334444566777
Q ss_pred hHHHHHHhcCC-C---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC---hhhHHHHHHHHhccCCcchhhHH
Q 036160 103 DNALKVFYRIK-D---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPN---QFVLTSLVRATTETGDQRCGESI 174 (601)
Q Consensus 103 ~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~---~~~~~~ll~~~~~~~~~~~a~~~ 174 (601)
+-+..+++... . .+..-.+.+ ...+..|+.+- ++.+.+.| ..++ ..-.+.+..++........-.++
T Consensus 86 ~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 86 EILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDN----VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHH----HHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHH----HHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 77777774433 2 222223333 33345566543 33444444 2222 22223333333222222333566
Q ss_pred HHHHHHHCCCCc
Q 036160 175 HAVICKYGFESD 186 (601)
Q Consensus 175 ~~~~~~~~~~~~ 186 (601)
.+.+.+.|..++
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 666777766554
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.79 E-value=89 Score=24.28 Aligned_cols=64 Identities=16% Similarity=0.017 Sum_probs=43.7
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCCh
Q 036160 38 LFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA 102 (601)
Q Consensus 38 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (601)
+.+.+++.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 14 ~~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 334566777766543 4455666666677889999999999888777777666667777776643
No 317
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=37.67 E-value=1.5e+02 Score=26.50 Aligned_cols=58 Identities=24% Similarity=0.192 Sum_probs=41.2
Q ss_pred hHhcCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHh
Q 036160 514 ITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585 (601)
Q Consensus 514 ~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 585 (601)
|....+.| -..++...+....+.+|+..|..+.++++++.|+. ...++|++++..-.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~~~qArkil~~ce~ 246 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP--------------EVAQQTRKILSACEK 246 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH--------------HHHHHHHHHHHHHHH
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhc
Confidence 44444566 34567778888999999999999999999998731 134556776665543
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.71 E-value=1.8e+02 Score=24.04 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=39.7
Q ss_pred HHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhhcC
Q 036160 22 LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKC 99 (601)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 99 (601)
.+...++.|+.+....+++.-...-..++..-.+. +...+..|+.+ +++.+.+.|..++.. .-...+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 35566778888887777765433211222222222 33334455544 344444555544321 111223333444
Q ss_pred CChhHHHHHHhc
Q 036160 100 GLADNALKVFYR 111 (601)
Q Consensus 100 ~~~~~A~~~~~~ 111 (601)
|+.+-+.-+++.
T Consensus 84 ~~~~~v~~Ll~~ 95 (231)
T 3aji_A 84 GXDEIVKALLVK 95 (231)
T ss_dssp TCHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 555555555544
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.25 E-value=32 Score=24.41 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=30.2
Q ss_pred CChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHH
Q 036160 30 GDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72 (601)
Q Consensus 30 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 72 (601)
.+.+.|.++++.+..+| ..+|..++.++...|+...|..
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHH
Confidence 57889999999998876 3578899999987776655543
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.03 E-value=1.9e+02 Score=24.00 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=10.0
Q ss_pred HHHhhcCCChhHHHHHHhcCC
Q 036160 93 VDMYSKCGLADNALKVFYRIK 113 (601)
Q Consensus 93 ~~~~~~~~~~~~A~~~~~~~~ 113 (601)
+...+..|+.+-+.-+++.-.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHcCC
Confidence 334444555555555554433
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.68 E-value=78 Score=24.42 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=41.6
Q ss_pred HhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCCh
Q 036160 40 CSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA 102 (601)
Q Consensus 40 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (601)
+.+++.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4466677766543 3445556656667778889998888777666766666667777766643
No 322
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=35.45 E-value=1.9e+02 Score=24.83 Aligned_cols=98 Identities=8% Similarity=0.033 Sum_probs=53.1
Q ss_pred CcccHHHHHHHHhhCCChhhHHHHHHhhhhcCCCC-------CcchHHHHHHHHh--ccCchhhhHHHHHHHHHhc----
Q 036160 15 NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-------SKFSLSTVLKGFA--NSGYIKAGQVVHAMAIRLG---- 81 (601)
Q Consensus 15 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---- 81 (601)
|..-.+.|.. .++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-...+
T Consensus 10 d~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFD-AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHH-HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHH-HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 3334444444 467899999888888776555332 3334455555554 3577776666666543211
Q ss_pred ---C--C-CChhHHhhHHHHhhcCCChhHHHHHHhcCCC
Q 036160 82 ---C--A-LDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114 (601)
Q Consensus 82 ---~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 114 (601)
. . .+..-.+ .+...+..|+.+-+.-+++.-..
T Consensus 89 ~i~~~~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 89 FVNASYTDSYYKGQT-ALHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp HHTCCCCSTTTTTCC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HhhcccccccCCCCC-HHHHHHHcCCHHHHHHHHHCCCC
Confidence 0 0 1112222 33334456777777777665443
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.19 E-value=1.3e+02 Score=32.34 Aligned_cols=30 Identities=3% Similarity=-0.346 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036160 524 LVWENLLGACSWHGNIELDEKDAEKLLELE 553 (601)
Q Consensus 524 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (601)
..|..++..+.+.+-++.+.++.+.+++.-
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 366777788888899999999999998753
No 324
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.10 E-value=1e+02 Score=23.52 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=8.7
Q ss_pred HHhhCCChhhHHHHHHh
Q 036160 25 GYAESGDGQKVMHLFCS 41 (601)
Q Consensus 25 ~~~~~~~~~~a~~~~~~ 41 (601)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33445555555555554
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.98 E-value=1.5e+02 Score=22.95 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=42.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHhhcCCC-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036160 343 RKMRLEGIKSNEFTLASCLNGCSPVA-TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405 (601)
Q Consensus 343 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (601)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446778888776654 3444555555 6778999999998887777776666666777776654
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.57 E-value=2.1e+02 Score=24.09 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC
Q 036160 437 EKALEAFRMMLDEGYVPDEI-TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490 (601)
Q Consensus 437 ~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 490 (601)
+.+..+|..|...|+--... .|......+...|++.+|.++|+.-++. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 45667888888877665543 5666667777778888888888877776 55553
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.55 E-value=1e+02 Score=20.61 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccC-CcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCc
Q 036160 141 NLMRESSVKPNQFVLTSLVRATTETG-DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203 (601)
Q Consensus 141 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (601)
+.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34667787777654 34556666554 5667888888887776556666666667777766654
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.24 E-value=1.3e+02 Score=25.19 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHhcCCCC-hhHHhhHHHHhhcCCChhHHHHHHhcCCCCCccchHHHHHHH
Q 036160 68 KAGQVVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127 (601)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 127 (601)
+...++|..|...|+... ...|......+-..|++.+|..+|+.-.+..+.....|...+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 466677777777766543 345666666666777777777777766655555555554443
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.02 E-value=1.4e+02 Score=22.53 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=39.8
Q ss_pred HHHHcCCCCCHHHHHHHHHhhcCCC-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036160 344 KMRLEGIKSNEFTLASCLNGCSPVA-TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405 (601)
Q Consensus 344 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (601)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..+...-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 466778777766543 344444445 6777888888888877766766666666666666543
No 330
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.92 E-value=24 Score=22.25 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCCCcceeehhhhhhhcCChhhHHHHHHHHHhcCCc
Q 036160 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589 (601)
Q Consensus 543 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 589 (601)
++..+.+.++.|+ -.....-..+-...|+.+.|...|-.|...+..
T Consensus 10 ee~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~ 55 (59)
T 1wgl_A 10 EEDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSG 55 (59)
T ss_dssp HHHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCS
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCC
Confidence 3444555556662 122222222233456677777666666544333
No 331
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.55 E-value=1.7e+02 Score=24.20 Aligned_cols=150 Identities=11% Similarity=-0.044 Sum_probs=73.1
Q ss_pred HHHHhhCCChhhHHHHHHhhhhcCCCCCcc--hHHHHHHHHhccCchhhhHHHHHHHHHhcCCC--------ChhHHhhH
Q 036160 23 LNGYAESGDGQKVMHLFCSMKDMEKKFSKF--SLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL--------DKFLSCSL 92 (601)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l 92 (601)
+...++.|+.+....+++.- |..++.. .-.+.+...+..|+.+-+..+++ .|..+ +..-. ..
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~-t~ 78 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFE---GCEVHQRGAMGETALHIAALYDNLEAAMVLME----AAPELVFEPMTSELYEGQ-TA 78 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTT---CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTC-CH
T ss_pred HHHHHHcCCHHHHHHHHHhc---CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH----cCchhccccccccCCCCc-CH
Confidence 44456677766665555431 3332221 11223444455666655554444 33221 11222 23
Q ss_pred HHHhhcCCChhHHHHHHhcCCCCCc----------------cchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh--
Q 036160 93 VDMYSKCGLADNALKVFYRIKDPDV----------------VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV-- 154 (601)
Q Consensus 93 ~~~~~~~~~~~~A~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-- 154 (601)
+...+..|+.+-+.-+++.-..++. .-++.| ...+..|+.+ +++.+.+.|..++...
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEE----IVRLLIEHGADIRAQDSL 153 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCCCC
Confidence 3444556777766666665443222 123333 3334455543 4444555665554321
Q ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHCCCC
Q 036160 155 LTSLVRATTETGDQRCGESIHAVICKYGFES 185 (601)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (601)
-.+.+...+..|+.+.+..+++.+.+.|..+
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 1234455556677776666777777766433
No 332
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.08 E-value=56 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHH
Q 036160 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338 (601)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 338 (601)
...+.|.++++.++.+++.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3577888888888888888888888888776765544
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.44 E-value=49 Score=20.82 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=23.3
Q ss_pred hhhHHHHHHhhhhcCCCCCcchHHHHHHHH-hccCch
Q 036160 32 GQKVMHLFCSMKDMEKKFSKFSLSTVLKGF-ANSGYI 67 (601)
Q Consensus 32 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~ 67 (601)
.++|.+.|.+|++..--++..+|...++.+ +.-.++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 356777777776554344556788888887 554433
No 334
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.66 E-value=1.9e+02 Score=23.19 Aligned_cols=117 Identities=10% Similarity=-0.000 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhH
Q 036160 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515 (601)
Q Consensus 436 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 515 (601)
.+....++..+.+.|+--|...-...+....+.|.+ .-..+-.++.++ |+.++. ....+..+......+.|..+++
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~K-GI~~~~--I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKK-GIDDNI--AEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTT-TCCHHH--HHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHc-CCCHHH--HHHHHHhCCchhHHHHHHHHHH
Confidence 345666777777777665555445555555443322 123334445555 665432 1111111111112344555555
Q ss_pred h-c---CCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCC
Q 036160 516 E-T---KLTPNALVWENLLGACSWHG-NIELDEKDAEKLLELEPKME 557 (601)
Q Consensus 516 ~-~---~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~ 557 (601)
+ + .-.|+.....-+...+.+.| .++.+..++..+ ...|++.
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l-~~~~~~~ 170 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL-DLIFDDE 170 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHC----
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC-cCCCCcc
Confidence 4 2 21223344555666677777 666666666654 4455443
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.49 E-value=1.6e+02 Score=26.79 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036160 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353 (601)
Q Consensus 295 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 353 (601)
+...+..|+.+-+..+++.-...+...-...+...+..|+.+-+..+++.....|..|+
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 34445556666666666554433221112223334456666666656555444454443
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.12 E-value=1.9e+02 Score=21.89 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=40.0
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccC-CcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCc
Q 036160 142 LMRESSVKPNQFVLTSLVRATTETG-DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203 (601)
Q Consensus 142 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (601)
.|.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 466778777766543 344555555 6777888998888877666666655666666666654
No 337
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.09 E-value=1.2e+02 Score=24.29 Aligned_cols=66 Identities=15% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhH-----------------HHHHHHHHHhcCChHHHHHHhHh-cCCCCcHHH
Q 036160 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKH-----------------FACMIDILGRAGKFTEIENFITE-TKLTPNALV 525 (601)
Q Consensus 464 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~ 525 (601)
+|-+..++..|+..++.+.+. .+..|+.+ ++.++..+...|+.+||+..+.. .+..|--.+
T Consensus 71 Cy~klKdYkkA~~~le~il~~-kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEG-KVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-CSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Q ss_pred HHHHH
Q 036160 526 WENLL 530 (601)
Q Consensus 526 ~~~l~ 530 (601)
...++
T Consensus 150 vEnli 154 (242)
T 3kae_A 150 VENLL 154 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.49 E-value=2.2e+02 Score=22.44 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=48.3
Q ss_pred hHHHHHHH-HHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHH--CCCCchhHHHHHHHHHHhcCCcc
Q 036160 134 QEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY--GFESDTLVGNALVSMYMENGRVS 204 (601)
Q Consensus 134 ~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 204 (601)
+.+++-+. .+.+.|++++..- ..++..+...++.-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444444 4566788886654 45566777777888899999999888 76667666666667777777653
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.33 E-value=2e+02 Score=22.24 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccC-CcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCc
Q 036160 141 NLMRESSVKPNQFVLTSLVRATTETG-DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203 (601)
Q Consensus 141 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 203 (601)
+.|.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4567788887766543 445555555 6778999999998887666666666667777777755
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.16 E-value=76 Score=24.50 Aligned_cols=62 Identities=5% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCC
Q 036160 37 HLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG 100 (601)
Q Consensus 37 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (601)
++-+.+++.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 5 ~~~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp THHHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
No 341
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.93 E-value=1.6e+02 Score=24.16 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.4
Q ss_pred hcCCCchhHHHHHHHHHHCCCCCCHhhHHHHHHHhcCCC
Q 036160 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267 (601)
Q Consensus 229 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 267 (601)
++..+++.|+-.+-+|.+.|-.|....-..++-+.-..|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 456789999999999999988777666666666654444
No 342
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.85 E-value=2.6e+02 Score=23.09 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=8.4
Q ss_pred HHHHhcCCHHHHHHHHhh
Q 036160 296 DMYDKSGCLEDAGVAFDS 313 (601)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~ 313 (601)
....+.|+.+-+..+++.
T Consensus 202 ~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 202 KLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 333445555555444443
No 343
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.83 E-value=2.5e+02 Score=25.45 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=20.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhCCCC
Q 036160 292 TSLVDMYDKSGCLEDAGVAFDSLANK 317 (601)
Q Consensus 292 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 317 (601)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 45677777888888888888888765
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.68 E-value=76 Score=23.94 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=20.0
Q ss_pred HHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCC
Q 036160 58 LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG 100 (601)
Q Consensus 58 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (601)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333444455555555555444444444444444444444
No 345
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.48 E-value=1.2e+02 Score=23.30 Aligned_cols=62 Identities=5% Similarity=0.021 Sum_probs=37.7
Q ss_pred HHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036160 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507 (601)
Q Consensus 444 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 507 (601)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-.
T Consensus 11 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 3456677777665332 333444455667788888888665 4445555555556777777754
No 346
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.04 E-value=2.7e+02 Score=23.04 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=66.1
Q ss_pred HHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhhcCCChhHHHHHHhcCCCC---CccchHHHHHHHHhcCC
Q 036160 58 LKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDP---DVVAWGAIITCLDQQGC 132 (601)
Q Consensus 58 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 132 (601)
+...+..|+.+ +++.+.+.|..++.. .-...+...+..|+.+-+.-+++.-..+ +....+.+. ..+..|+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~ 89 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH-LAAKKGH 89 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH-HHHHTTC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCC
Confidence 44455566655 444555556554432 1123444455677877777777654332 223333333 3345565
Q ss_pred hhHHHHHHHHHHHcC-CCCChhh--HHHHHHHHhccCCcchhhHHHHHHHHHCCCCchh--HHHHHHHHHHhcCCccHHH
Q 036160 133 CQEAAKIFNLMRESS-VKPNQFV--LTSLVRATTETGDQRCGESIHAVICKYGFESDTL--VGNALVSMYMENGRVSYGS 207 (601)
Q Consensus 133 ~~~a~~~~~~m~~~~-~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 207 (601)
.+ +++.+.+.| ..++... -...+...+..|+. ++++.+.+.|..++.. .-.+.+...+..|+.+-+.
T Consensus 90 ~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 90 YE----VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV----DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HH----HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HH----HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 44 444455544 2222111 11223333444544 3455555566544322 1112333444556665555
Q ss_pred HHHhhc
Q 036160 208 RVFEAI 213 (601)
Q Consensus 208 ~~~~~~ 213 (601)
-+++.-
T Consensus 162 ~Ll~~g 167 (237)
T 3b7b_A 162 ILLAAK 167 (237)
T ss_dssp HHHTTT
T ss_pred HHHHcC
Confidence 555443
No 347
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.85 E-value=1.7e+02 Score=22.57 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 036160 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507 (601)
Q Consensus 444 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 507 (601)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 445667776655432 3344444556677888888888776 4455555555556777777764
No 348
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.82 E-value=3.1e+02 Score=24.68 Aligned_cols=106 Identities=9% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHh----cCCccHHHHHHhh-
Q 036160 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME----NGRVSYGSRVFEA- 212 (601)
Q Consensus 138 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~- 212 (601)
+++..+.+.|+.|...++..++..+++.=.++.+.++|+.+...|...-..+..+++..+.. ..++++...+++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q ss_pred cCCCCcccHHHHHHHHhcCCCchhHHHHHHH
Q 036160 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243 (601)
Q Consensus 213 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 243 (601)
++..+......++.-........+..++=.+
T Consensus 289 ~p~~~~~di~~li~~A~~l~~s~~l~~~e~e 319 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEMDIAKQLQAYEVE 319 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCchHHHHHHHHH
No 349
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.82 E-value=2.7e+02 Score=22.93 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=41.1
Q ss_pred HHHHHH---HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCch-----hhHHHHHHHHHHhCCC
Q 036160 324 AIITSY---AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL-----ANGRLLHSIAVKTGHL 386 (601)
Q Consensus 324 ~ll~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 386 (601)
-+|+++ .+..+++.|+-.+-+|.+.| .|....-..++.+....|.- ..|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 345555 45689999999999999999 77777777777777666643 2233344444444543
No 350
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.35 E-value=2.8e+02 Score=22.72 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=34.6
Q ss_pred HHHHH---HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCc
Q 036160 325 IITSY---AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369 (601)
Q Consensus 325 ll~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 369 (601)
+|+++ .+..+++.|+-.+-+|++.|-.|....-..++.+....|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 44444 4568999999999999999988887777777777666554
No 351
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.34 E-value=72 Score=24.41 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHHHHhccCchhhhHHHHHHHHHhcCCCChhHHhhHHHHhhcCCC
Q 036160 55 STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101 (601)
Q Consensus 55 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (601)
..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34445555555555666666666655555555554445555555554
No 352
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.89 E-value=2.1e+02 Score=27.24 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCChhHHhhHHHHhhcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036160 73 VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149 (601)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 149 (601)
.+....+.|++-....|..-.+.+...|++++|-++--..+. ++..+.+.+-..-...|...-.+..|..+.+.| +
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~ 426 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-c
Q ss_pred CChhhHHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHHHhhcCCCC
Q 036160 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217 (601)
Q Consensus 150 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 217 (601)
.+..--.-+++.....|+.+-.++++.+ +..+++-=+--+.+..+..-|..+|.+..-++
T Consensus 427 Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a~~~~ 486 (494)
T 1bpo_A 427 LNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRANVPN 486 (494)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHHCCCC
T ss_pred cchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHcCCcH
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.74 E-value=1.1e+02 Score=23.34 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCch
Q 036160 20 NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67 (601)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 67 (601)
..++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 356777777777888999999998877666666666666666666544
No 354
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=24.44 E-value=54 Score=20.63 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=17.2
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCh
Q 036160 130 QGCCQEAAKIFNLMRESS-VKPNQ 152 (601)
Q Consensus 130 ~~~~~~a~~~~~~m~~~~-~~p~~ 152 (601)
.-+++.|...|.++...| |+|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457899999999998765 55544
No 355
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.43 E-value=3e+02 Score=22.65 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=38.0
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCc-----HHHHHHHHHHHHHHhCCC
Q 036160 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL-----IEEGKKHFSSIKKIYGIT 488 (601)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 488 (601)
.+..+++.|+-.+-+|++.| .|....-..++.+...-|. ...|...++..... |.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCC
Confidence 45679999999999999999 6666666666666666553 33455555555444 653
No 356
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.34 E-value=1.1e+02 Score=26.19 Aligned_cols=117 Identities=9% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhccCchhhhHHHHHHHHHhcCCCCh------hHHhhHHHHhhcC---CChhHHHHHHhcCCCCC---------
Q 036160 55 STVLKGFANSGYIKAGQVVHAMAIRLGCALDK------FLSCSLVDMYSKC---GLADNALKVFYRIKDPD--------- 116 (601)
Q Consensus 55 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~--------- 116 (601)
.+.+...++.|+.+.+..+++.+.+.|..++. ..-.+.+...+.. |+.+-+.-+++.-..++
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Q ss_pred -----ccchHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh---------------HHHHHHHHhccCCcchhhHHHH
Q 036160 117 -----VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV---------------LTSLVRATTETGDQRCGESIHA 176 (601)
Q Consensus 117 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---------------~~~ll~~~~~~~~~~~a~~~~~ 176 (601)
..-++.|..+..... .++.+.+.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 83 ~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 83 CTDEFYQGHSALHIAIEKRS-----LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CCSTTTTTCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
No 357
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.19 E-value=1.1e+02 Score=22.90 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHHhhCCChhhHHHHHHhhhhcCCCCCcchHHHHHHHHhccCchh
Q 036160 21 ALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIK 68 (601)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 68 (601)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 467777777788899999999988776666667666677777776553
No 358
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=23.79 E-value=2.8e+02 Score=22.19 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hHHHHHHhHhc
Q 036160 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK-FTEIENFITET 517 (601)
Q Consensus 439 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 517 (601)
...+-.++...|+.++. ....+..+......+.|..++++-...+.-.++.....-++..+.+.|- ++.+..+++++
T Consensus 86 ~~~I~~eL~~KGI~~~~--I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 86 PKVIKLNLSKKGIDDNI--AEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHHTTTCCHHH--HHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHH--HHHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 35566677777775432 2222222211222345556655443331212223445567777888884 56667777776
Q ss_pred CCCCcH
Q 036160 518 KLTPNA 523 (601)
Q Consensus 518 ~~~p~~ 523 (601)
...||.
T Consensus 164 ~~~~~~ 169 (177)
T 3e3v_A 164 DLIFDD 169 (177)
T ss_dssp HHC---
T ss_pred cCCCCc
Confidence 655543
No 359
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.98 E-value=1.9e+02 Score=19.98 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=25.3
Q ss_pred cCCccHHHHHHhhcCCCCcccHHHHHHHHhcCCCch
Q 036160 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235 (601)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 235 (601)
....++|.++++.++.++..+|..++.++...+...
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 456677778887777777777777777777666533
No 360
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.86 E-value=1.5e+02 Score=23.35 Aligned_cols=53 Identities=8% Similarity=-0.090 Sum_probs=37.3
Q ss_pred hhCCChhhHHHHHHhhhhcCCCC--CcchHHHHHH-HH-----hccCchhhhHHHHHHHHH
Q 036160 27 AESGDGQKVMHLFCSMKDMEKKF--SKFSLSTVLK-GF-----ANSGYIKAGQVVHAMAIR 79 (601)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 79 (601)
...|++-+|-++|+..-.....+ ....|..||+ .. .+.|+...|..++.....
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34589999999998887654445 4556777777 32 257788888888877765
No 361
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.12 E-value=4.8e+02 Score=24.27 Aligned_cols=299 Identities=13% Similarity=0.137 Sum_probs=146.7
Q ss_pred HHHHHhccCchhhhHHHHHHHHHhcCCCChh--HHhhHHHHhhcCCChhHHHHHHhcCCCC---CccchHHHHHHHHhcC
Q 036160 57 VLKGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDP---DVVAWGAIITCLDQQG 131 (601)
Q Consensus 57 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~ 131 (601)
.+...+..|+.+-+..+ .+.|..++.. .....+...+..|+.+-+.-+++.-... +..-++.| ...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-HCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-HHHHHHT
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCC
Confidence 45555667776655444 4456655432 2234455566778888888887764432 22333333 4445667
Q ss_pred ChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCCcchhhHHHHHHHHHCCCCchh--HHHHHHHHHHhcCCccHHH
Q 036160 132 CCQEAAKIFNLMRESSVKPNQFV--LTSLVRATTETGDQRCGESIHAVICKYGFESDTL--VGNALVSMYMENGRVSYGS 207 (601)
Q Consensus 132 ~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 207 (601)
+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..+ .+.+..++.. .-.+.+...+..|+.+-+.
T Consensus 92 ~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 92 HTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL----LEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp CHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH----HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH----HhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 654 4445555565554321 12234445566766544444 4444333211 1123445556778888777
Q ss_pred HHHhhcCCCCc---ccHHHHHHHHhcCCCchhHHHHHHHHHHCCCCCCHh---hHHHHHHHhcCCCChhHHHHHHHHHHH
Q 036160 208 RVFEAIAHQDS---VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC---TFIVILKACSSLSDVGFGKQLHAHTIK 281 (601)
Q Consensus 208 ~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~ 281 (601)
.+++.-..++. ...+. +...+..|+.+ +++.+.+.|..|+.. ..+ .+...+..|+.+.+..++ +
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~ 233 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLL----Q 233 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHH----H
T ss_pred HHHhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH----H
Confidence 77776544322 12222 33344455543 444555565444332 222 334445566665554444 4
Q ss_pred ccCCCCcc--hhhHHHHHHHhcCCHHHHHHHHhhCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-
Q 036160 282 HSLDGNHV--VGTSLVDMYDKSGCLEDAGVAFDSLANKD---LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF- 355 (601)
Q Consensus 282 ~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~- 355 (601)
.|..++.. .-.+.+...+..|+.+-...+++.-...+ ....+.+ ...+..|+.+- ++.+.+.|..++..
T Consensus 234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~ 308 (437)
T 1n11_A 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL-HLVAQEGHVPV----ADVLIKHGVMVDATT 308 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHH-HHHHHHTCHHH----HHHHHHHTCCTTCCC
T ss_pred cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHhCCccCCCCC
Confidence 44433322 11234455567788887777776544332 2222333 33345566543 34444555444321
Q ss_pred --HHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCc
Q 036160 356 --TLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388 (601)
Q Consensus 356 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 388 (601)
..+.+ ...+..|+.+ +.+.+.+.|..++
T Consensus 309 ~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~n 338 (437)
T 1n11_A 309 RMGYTPL-HVASHYGNIK----LVKFLLQHQADVN 338 (437)
T ss_dssp SSCCCHH-HHHHHSSCSH----HHHHHHHTTCCTT
T ss_pred CCCCCHH-HHHHHcCcHH----HHHHHHhcCCCCC
Confidence 11222 2333455554 4444555565544
No 362
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.25 E-value=4.2e+02 Score=23.96 Aligned_cols=79 Identities=8% Similarity=0.021 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhcCCCchhhHHHHHHHHHHhCCCCc-hhHH--HHHHHHH----HhcCCHHHHHHHH
Q 036160 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVS--TALVAMY----AKCGSIDDAEAVF 412 (601)
Q Consensus 340 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~~----~~~~~~~~A~~~~ 412 (601)
++++.+.+.|+.|...++.-++..+++.=..+.+..+|+.+...|.... ...+ -+++..+ ....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4556667788988888888888889888889999999999988775433 2222 2333222 2346778888888
Q ss_pred cCCCCC
Q 036160 413 KGSALR 418 (601)
Q Consensus 413 ~~~~~~ 418 (601)
+.+...
T Consensus 310 ~~~p~~ 315 (345)
T 2qfz_A 310 QNLPTA 315 (345)
T ss_dssp TSCSCT
T ss_pred HcCCCc
Confidence 877654
No 363
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.18 E-value=3.4e+02 Score=22.21 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=10.1
Q ss_pred HHHhhcCCChhHHHHHHhc
Q 036160 93 VDMYSKCGLADNALKVFYR 111 (601)
Q Consensus 93 ~~~~~~~~~~~~A~~~~~~ 111 (601)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334455666666655554
No 364
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=21.17 E-value=75 Score=16.95 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=12.8
Q ss_pred hhhhhhhcCChhhHHHHHHHHH
Q 036160 563 PSDISATQGRWNDFSGVRALLS 584 (601)
Q Consensus 563 l~~~~~~~g~~~~A~~~~~~~~ 584 (601)
.+..|...|+.++|..+-.+++
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 3445555666666666655554
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.07 E-value=5.5e+02 Score=27.45 Aligned_cols=122 Identities=16% Similarity=0.020 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHhhcC
Q 036160 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE------FTLASCLNGCSP 366 (601)
Q Consensus 293 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~ 366 (601)
.++..+...|..+-+.++..-++. ++..--.+..+|...|++++|...|++.- .|+..+. .....++....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e- 891 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYH- 891 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTT-
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccc-
Confidence 466777788888888876666654 44443456778899999999999998753 2332211 01111111100
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc----CCCCCCH----hHHHHHHHHHHhCC
Q 036160 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK----GSALRDT----ASWNMMIGGYVKHG 434 (601)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~----~~~~~l~~~~~~~~ 434 (601)
.......-|.-++..+.+.+.++.+.++-+ .+...|. ..|..++++.+..|
T Consensus 892 -----------------~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 892 -----------------HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -----------------TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 001122366778888888888887766543 3333333 35777777766544
No 366
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.96 E-value=1.7e+02 Score=22.14 Aligned_cols=142 Identities=11% Similarity=0.069 Sum_probs=63.2
Q ss_pred HHHHhccCchhhhHHHHHHHHHhcCCC---ChhHHhhHHHHhhcCCChhHHHHHHhcCCC---CCccchHHHHHHHHhcC
Q 036160 58 LKGFANSGYIKAGQVVHAMAIRLGCAL---DKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQG 131 (601)
Q Consensus 58 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 131 (601)
+...+..|+.+.+..+++. . +..+ +..-. ..+.. +..|+.+-+..+++.-.. ++..-++.|..+ +..|
T Consensus 6 L~~A~~~g~~~~v~~ll~~-~--~~~~~~~~~~g~-t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~ 79 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR-E--LVHPDALNRFGK-TALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDA-ARTG 79 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT-T--CCCTTCCCTTSC-CHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTT
T ss_pred HHHHHHhCCHHHHHHHHHh-h--CcCccccCCCCC-cHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH-HHcC
Confidence 4444556677666666655 1 1111 22222 23333 666777766666665433 223333444333 3445
Q ss_pred ChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCCcchhhHHHHHHHHHCCCCchhHHHHHHHHHHhcCCccHHHHH
Q 036160 132 CCQEAAKIFNLMRESSVKPNQFV--LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209 (601)
Q Consensus 132 ~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 209 (601)
+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.-+++. .... ..|..-. +-+...+..|+.+-+.-+
T Consensus 80 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~-t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 80 FLD----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGL-TPLELALQRGAQDLVDIL 152 (156)
T ss_dssp CHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSC-CHHHHHHHSCCHHHHHHH
T ss_pred cHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCC-CHHHHHHHcCcHHHHHHH
Confidence 544 3344445554443221 12233444455665544444433 1111 1111111 233444566666655555
Q ss_pred Hhh
Q 036160 210 FEA 212 (601)
Q Consensus 210 ~~~ 212 (601)
++.
T Consensus 153 l~~ 155 (156)
T 1bd8_A 153 QGH 155 (156)
T ss_dssp HTT
T ss_pred Hhh
Confidence 543
No 367
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.19 E-value=3.2e+02 Score=22.74 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHh--hHH-----HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 036160 436 GEKALEAFRMMLDEGYVPDEI--TFV-----VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505 (601)
Q Consensus 436 ~~~A~~~~~~m~~~~~~p~~~--~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 505 (601)
.+.|+.+|+.+.+.--.|+.. ... ..+..|.+.|.+++|.+++++... -.++..-...-+....+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~---~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS---KDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST---TCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc---CCCCchHHHHHHHHHHhcc
Confidence 356777777666642111211 111 223457788888888888887753 2444443333333334433
No 368
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.01 E-value=3.8e+02 Score=22.24 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=43.2
Q ss_pred HHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCch-----hhHHHHHHHHHHhCCC
Q 036160 323 TAIITSYA---QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL-----ANGRLLHSIAVKTGHL 386 (601)
Q Consensus 323 ~~ll~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 386 (601)
--+|+++. +..+++.|+-.+-+|++.|-.|....-..++.+....|.- ..|...++.....|.+
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34455554 5689999999999999999888877777777776666543 2333444444444543
Done!