BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036161
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
Query: 17 FCNSPFRTIHPVYC-----------SIAPNTDGIDPD---------CYIESGNGLVAVKS 56
NSP IHPV S PN DGIDP+ C ++G+ V +KS
Sbjct: 208 IINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKS 267
Query: 57 GWDHDGIAMARPSSNIAVR-RVSGTTPTCSGVGIGREMSGRIFNVT 101
G D DG + PS I VR + + + G+ IG EMSG + NV
Sbjct: 268 GRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVV 313
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 18/84 (21%)
Query: 31 SIAPNTDGIDP---------DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTT 81
S A NTDGIDP I +G+ VA+K+ + G A R NI++ +
Sbjct: 196 STARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA---YKGRAETR---NISI--LHNDF 247
Query: 82 PTCSGVGIGREMSGRIFNVTVDHL 105
T G+ IG E G ++NVTVD L
Sbjct: 248 GTGHGMSIGSETMG-VYNVTVDDL 270
>pdb|3S6X|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6X|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6X|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6Y|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Y|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Y|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Z|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
pdb|3S6Z|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
pdb|3S6Z|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
Length = 325
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 183 APSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNC 234
+P++++ VSG G P + + S W + +SG LN+ VQ+N
Sbjct: 163 SPNLRYPIADVSGGIGM-----SPNYRFRQSMWIGIVSYSGSGLNWRVQVNS 209
>pdb|1KKE|A Chain A, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
pdb|1KKE|B Chain B, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
pdb|1KKE|C Chain C, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
Length = 210
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 183 APSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNC 234
+P++++ VSG G P + + S W + +SG LN+ VQ+N
Sbjct: 48 SPNLRYPIADVSGGIGM-----SPNYRFRQSMWIGIVSYSGSGLNWRVQVNS 94
>pdb|2OJ5|A Chain A, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|B Chain B, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|C Chain C, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|D Chain D, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|E Chain E, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|F Chain F, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|3EOY|A Chain A, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|B Chain B, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|C Chain C, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|D Chain D, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|E Chain E, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|F Chain F, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 165
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 183 APSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNC 234
+P++++ VSG G P + + S W + +SG LN+ VQ+N
Sbjct: 3 SPNLRYPIADVSGGIGM-----SPNYRFRQSMWIGIVSYSGSGLNWRVQVNS 49
>pdb|2OJ6|A Chain A, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|B Chain B, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|C Chain C, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|D Chain D, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|E Chain E, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|F Chain F, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
Length = 165
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 183 APSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNC 234
+P++++ VSG G P + + S W + +SG LN+ VQ+N
Sbjct: 3 SPNLRYPIADVSGGIGM-----SPNYRFRQSMWIGIVSYSGSGLNWRVQVNS 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,814,771
Number of Sequences: 62578
Number of extensions: 259738
Number of successful extensions: 364
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)