BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036161
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 131/273 (47%), Gaps = 48/273 (17%)
Query: 1 VELMNSNNILIISNLAFCNSPFRTIHPVYCS-------------IAPNTDGIDPD----- 42
+ELM S +I I SNL NSP +HPVY +PNTDGI+PD
Sbjct: 202 IELMYSADIQI-SNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNT 260
Query: 43 ----CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIF 98
CYI SG+ VAVKSGWD GIA P+ + +RR++ +P + + +G EMSG I
Sbjct: 261 RIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQ 320
Query: 99 NVTVD-----------HLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRD 147
+V + + T GRGG +++I +R + M+ +K ++ H D D
Sbjct: 321 DVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYD 380
Query: 148 PKAIPKIRGISFVNVFSVNTTKAP------------ICMKNVS--LLVLAPSVKWQCQFV 193
PKA P I+GI++ ++ + N + A IC+ NV+ L A V W C V
Sbjct: 381 PKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDV 440
Query: 194 SGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDL 226
G + V P PC L ++ S F E L
Sbjct: 441 EGISSGVTPTPCSTLPDQGPEKTSLCNFPAESL 473
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1
Length = 312
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 53/201 (26%)
Query: 19 NSPFRTIHPVYCSI-------------APNTDGIDPD---------CYIESGNGLVAVKS 56
N+ TIHP C +PNTDG +P+ G+ +AVK+
Sbjct: 42 NAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKA 101
Query: 57 G-----WDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLD---TD 108
G + D +A R I VR P G+ IG EMSG + +VTV+ D TD
Sbjct: 102 GKRGPDGEDDHLAETR---GITVRHCL-MQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTD 157
Query: 109 KGR---------GGNIENIIIRNIKMERVKIPIKISR----GSNGHPD--EGRDPKAI-- 151
+G GG + NI +R + ++ V+ + + ++GH D + R+P +
Sbjct: 158 RGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYHCDADGHDDWVQSRNPAPVND 217
Query: 152 --PKIRGISFVNVFSVNTTKA 170
P + GI+ +V N A
Sbjct: 218 GTPFVDGITVEDVEIRNLAHA 238
>sp|P26509|PGLR2_PECSS Endo-polygalacturonase OS=Pectobacterium sp. (strain SCC3193)
GN=pehA PE=1 SV=1
Length = 402
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 65/236 (27%)
Query: 4 MNSNNILIISNLAFCNSPFRTIHPVYC---------------SIAPNTDGIDP------- 41
+N + + N++ NSP H V+ S A NTDGIDP
Sbjct: 182 INKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNIT 239
Query: 42 --DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFN 99
I +G+ VA+K+ + G A R NI++ + T G+ IG E G ++N
Sbjct: 240 IAYSNIATGDDNVAIKA---YKGRAETR---NISI--LHNDFGTGHGMSIGSETMG-VYN 290
Query: 100 VTVDHL-----------DTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDP 148
VTVD L +DK G + + N+ M+ V PI I E ++
Sbjct: 291 VTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDT-----VYEKKEG 345
Query: 149 KAIPKIRGISFVNVFSV---------NTTKAPI--CMKNVSLLVLAPSVKWQCQFV 193
+P I+F +V S K PI MKNV L WQ + V
Sbjct: 346 SNVPDWSDITFKDVTSETKGVVVLNGENAKKPIEVTMKNVK---LTSDSTWQIKNV 398
>sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium carotovorum subsp.
carotovorum GN=peh PE=3 SV=1
Length = 402
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 93/237 (39%), Gaps = 65/237 (27%)
Query: 4 MNSNNILIISNLAFCNSPFRTIHPVYC---------------SIAPNTDGIDP------- 41
+N + + N++ NSP H V+ S A NTDGIDP
Sbjct: 182 INKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNIT 239
Query: 42 --DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFN 99
I +G+ VA+K+ + G + R NI++ + T G+ IG E G ++N
Sbjct: 240 IAHSNISTGDDNVAIKA---YKGRSETR---NISI--LHNEFGTGHGMSIGSETMG-VYN 290
Query: 100 VTVDHL-----------DTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDP 148
VTVD L +DK G + + N+ M+ V PI I E ++
Sbjct: 291 VTVDDLIMTGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDT-----VYEKKEG 345
Query: 149 KAIPKIRGISF---------VNVFSVNTTKAPI--CMKNVSLLVLAPSVKWQCQFVS 194
+P I+F V V + K PI MKNV L WQ + V+
Sbjct: 346 SNVPDWSDITFKDITSQTKGVVVLNGENAKKPIEVTMKNVK---LTSDSTWQIKNVT 399
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana
GN=At1g80170 PE=1 SV=1
Length = 444
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 46/221 (20%)
Query: 20 SPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLV----AVKSGWDHDGIAMARPSSNIAVR 75
S + I P + +PNTDGI +I G+V V +G D I++ + S+ I++
Sbjct: 214 SGLKVIAP---ATSPNTDGI----HISVSRGIVIDNTTVSTG--DDCISIVKNSTQISIS 264
Query: 76 RV-SGTTPTCSGVGIGREMS-GRIFNVTVD-----------HLDTDKGRGGNIENIIIRN 122
+ G S +G+ S + ++TVD + T +G G + II RN
Sbjct: 265 NIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRN 324
Query: 123 IKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPICM-------- 174
IKM V PI I + + + I ISFV+V + +K I +
Sbjct: 325 IKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPC 384
Query: 175 KNVSL--LVLAP--------SVKWQCQFVSGFNGQVFPLPC 205
+N+ L + L P S W+ S +GQV+P PC
Sbjct: 385 RNILLQDIDLEPSNGDGFTESFCWEAYGSS--SGQVYPPPC 423
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 41/166 (24%)
Query: 33 APNTDGID---------PDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVS---GT 80
+PNTDGID C I +G+ VAV +G SSNI ++ ++ G
Sbjct: 231 SPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTCGPGH 279
Query: 81 TPTCSGVGIGREMSGRIFNVTVDHLD--------------TDKGRGGNIENIIIRNIKME 126
+ +G G S V+ HLD T +G G +I N++M
Sbjct: 280 GMSIGSLGKGNSRS----EVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEMI 335
Query: 127 RVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPI 172
+ PI I++ ++ ++ KI+ ++F N+ + T A I
Sbjct: 336 NAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAAI 381
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana
GN=At3g15720 PE=1 SV=1
Length = 456
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 39/177 (22%)
Query: 6 SNNILIISNLAFCNSPFRTIHPVYCSI-------------APNTDGID---------PDC 43
S N L +S L +SP IH C+ +PNTDGID DC
Sbjct: 145 SCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDC 204
Query: 44 YIESGNGLVAVKSGWDHDGIAMAR--PSSNIAVRRV--SGTTPTCSGVGIGR-----EMS 94
I +G+ +A+ SG + I+ P I++ + G T T V + M+
Sbjct: 205 IIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMN 264
Query: 95 GRIFNVTVDHLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSN-GHPDEGRDPKA 150
G + T +G G I I ++ V+ PI I + N G D +D K+
Sbjct: 265 GA-------RIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKS 314
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1
Length = 431
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 104 HLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVF 163
+ T +G G +NI +NI+ME VK PI I + D+ D ++ +++ + + N+
Sbjct: 321 RIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQ-DYCDKDKCEDQESAVQVKNVVYKNIS 379
Query: 164 SVNTTKAPICMKNVSLLVLAPSVKWQCQFV 193
+ T I L S K+ CQ +
Sbjct: 380 GTSATDVAI--------TLNCSEKYPCQGI 401
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 10 LIISNLAFCNSPFRTIHPVYCSI---------------APNTDGIDPDCYIESGNGLVAV 54
LII L NSP H V+ + +PNTDGI D + L
Sbjct: 194 LIIQGLKLMNSP--EFHLVFGNCEGVKIIGISITAPRDSPNTDGI--DIFASKNFHLQKN 249
Query: 55 KSGWDHDGIAMARPSSNIAVRR-VSGTTPTCSGVGIGREMS-GRIFNVTVD--------- 103
G D +A+ SSNI + + G S +GRE S + V V+
Sbjct: 250 TIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQN 309
Query: 104 --HLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVN 161
+ T +G G +II N++M + PI I++ ++ ++ +I+ +++ N
Sbjct: 310 GLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKN 369
Query: 162 VFSVNTTKAPICMK 175
+ + T A I +K
Sbjct: 370 IRGTSATAAAIQLK 383
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 33/162 (20%)
Query: 33 APNTDGID---------PDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRR-VSGTTP 82
+PNTDGID C I +G+ +A+ +G SSNI ++ + G
Sbjct: 230 SPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLICGPGH 278
Query: 83 TCSGVGIGREMS-GRIFNVTVDH---LDTDKG------RGGN--IENIIIRNIKMERVKI 130
S +GR+ S + +V V+ +DT G +GG+ I N++M +
Sbjct: 279 GISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSEN 338
Query: 131 PIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPI 172
PI I++ ++ ++ +I+G+++ N+ + T A I
Sbjct: 339 PILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAI 380
>sp|Q6FKH3|SBE22_CANGA Protein SBE22 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SBE22 PE=3 SV=1
Length = 813
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 52 VAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLDT 107
V KSG GI +R S + R SG+ G+G+GR S +F+ D LDT
Sbjct: 17 VESKSGRTLAGITSSRKESGMRSRTSSGSAQAV-GLGLGRRPSDNLFHGHADPLDT 71
>sp|P58598|PGLR_RALSO Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000)
GN=pglA PE=3 SV=1
Length = 531
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 36/123 (29%)
Query: 35 NTDGIDP---------DCYIESGNGLVAVK-SGWDHDGIAMARPSSNIAVRRVSGTTPTC 84
NTDG DP + YI +G+ VA+K SG + A
Sbjct: 284 NTDGFDPGQSTNVVLANSYISTGDDHVAIKASGGATRNLLFAHNHFYYG----------- 332
Query: 85 SGVGIGREMSGRIFNVTVDHL---------------DTDKGRGGNIENIIIRNIKMERVK 129
G+ IG E G + N+ V L +D RGG + NI+ I M VK
Sbjct: 333 HGLSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVK 392
Query: 130 IPI 132
P+
Sbjct: 393 EPL 395
>sp|Q3ADX8|MOAA_CARHZ Cyclic pyranopterin monophosphate synthase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=moaA PE=3
SV=1
Length = 321
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 22/103 (21%)
Query: 99 NVTVDHLDTDKGR----GGNIENIIIR-NIKMERVKIPIKISRGSNGHPDEGRDPKAIPK 153
N ++D L+ DK R GG ++N++ N+ +E P+KI+
Sbjct: 115 NFSLDSLNPDKFRSITGGGELKNVLEAINLALELDLTPVKIN---------------TVL 159
Query: 154 IRGISF--VNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVS 194
+RGI+ ++ F + P+ + + L+ L KWQ QFVS
Sbjct: 160 LRGINLDEIDAFVDFIFRYPVHWRFIELMPLNDREKWQRQFVS 202
>sp|P20041|PGLR_RALSL Polygalacturonase OS=Ralstonia solanacearum GN=pglA PE=1 SV=1
Length = 529
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 34/122 (27%)
Query: 35 NTDGIDPD---------CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCS 85
NTDG DP YI +G+ VAVK A + P+ N+
Sbjct: 282 NTDGFDPGQSTNVVLAYSYINTGDDHVAVK--------ASSGPTRNLLFAH--NHFYYGH 331
Query: 86 GVGIGREMSGRIFNVTVDHL---------------DTDKGRGGNIENIIIRNIKMERVKI 130
G+ IG E + + N+ V L +D RGG + NI+ I M VK
Sbjct: 332 GLSIGSETNTGVSNMLVTDLTMDGNDSSAGNGLRIKSDASRGGKVTNIVYDGICMRNVKE 391
Query: 131 PI 132
P+
Sbjct: 392 PL 393
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2
Length = 433
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 29/124 (23%)
Query: 33 APNTDGIDPDCYIESGNGLVAVKS--GWDHDGIAMARPSSNIAVRRVSGTTPTCS---GV 87
+PNTDGI +I + + +S G D I++ S N+ + + TC G+
Sbjct: 239 SPNTDGI----HITNTQNIRVSESIIGTGDDCISIESGSQNVQINDI-----TCGPGHGI 289
Query: 88 GIGR--EMSGRIF--NVTVD-----------HLDTDKGRGGNIENIIIRNIKMERVKIPI 132
IG + + + F VTVD + T +G G NII +NI+M+ VK PI
Sbjct: 290 SIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPI 349
Query: 133 KISR 136
I +
Sbjct: 350 IIDQ 353
>sp|Q8R4U7|LUZP1_MOUSE Leucine zipper protein 1 OS=Mus musculus GN=Luzp1 PE=1 SV=2
Length = 1068
Score = 31.6 bits (70), Expect = 6.1, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 59 DHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGR--------IFNVTVDHLDTDKG 110
++D + RPSSN + C+GV R S R I V +D D K
Sbjct: 715 ENDSVKPTRPSSNA----IEFPDANCAGVKNQRPFSPREALRSRAIIKPVIIDK-DVKKI 769
Query: 111 RGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIP 152
GG+ +++ K + K++ +P + P+A+P
Sbjct: 770 MGGSGTEVVLEKQKSTSKSVTSKVTSSITIYPSDSSGPRAVP 811
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,731,034
Number of Sequences: 539616
Number of extensions: 4052072
Number of successful extensions: 8109
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8097
Number of HSP's gapped (non-prelim): 23
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)