BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036163
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 216/352 (61%), Gaps = 6/352 (1%)
Query: 9 LDSTLAKGKILICQSSDEFSEVLRSGAGGSVSLNDDKIGKXXXXXXXXXXXXXKDNFTSI 68
++ L KGKI++C++S E +S G + L ++ +
Sbjct: 275 VNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLAT 334
Query: 69 YSYLKSTKKPEAEILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFS 128
Y+ S + P A I + I ++ APVV FSSRGPN D++KPDIS PGV+ILAA+
Sbjct: 335 LRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW- 393
Query: 129 PFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPM 188
P P+G +R ++I+SGTSMSCPH+ G+A YVK+++P WSP+AIKSA+MTTA PM
Sbjct: 394 PSVAPVGG--IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPM 451
Query: 189 NSSKNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDEGNIGKISGNFSTC 248
N+ N AEFA+GSGH+NP++AV PGLVY+ E DY+ LC GY+ + +I+G++S C
Sbjct: 452 NARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSAC 511
Query: 249 PKGSDKATPRDLNYPSMAAQVSPGRSFTINFSRTVTNVGLANTTYKAKILQNSKIGVKVV 308
G + DLNYPS VSP ++F F+RT+T+V +TY+A I + + V
Sbjct: 512 TSG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVN 570
Query: 309 PQALTFKSLNEKKSFRVTVTGRGLSNGTIVSTSLIWADGNHNVRSPIVVHSL 360
P L+F L ++KSF +TV RG G +VS SL+W+DG H VRSPI + SL
Sbjct: 571 PNVLSFNGLGDRKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPITITSL 620
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 136/360 (37%), Positives = 200/360 (55%), Gaps = 25/360 (6%)
Query: 18 ILICQSSDEFSE----VLRSGAGGSVSLNDDKIGKXXXXXXXXXXXXXKDNFTSIYSYLK 73
I+IC + +FS+ + R+ ++ +++D K + +Y+K
Sbjct: 286 IVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVK 345
Query: 74 STKKPEAEILTTEAITDSD-APVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSP--F 130
++ P A I E D+ APVVA S+RGP+ I KPDI APGV ILAA+ P F
Sbjct: 346 NSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVF 405
Query: 131 GVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNS 190
IG + Y + SGTSM+ PH AG+AA +K+ HP+WSPSAI+SA+MTTA P+++
Sbjct: 406 ATSIGTNIL-LSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDN 464
Query: 191 SKN--KDAE-------FAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDEGNIGKI 241
++ KD++ G+GH++P A++PGLVY+ QDY+ +LCS+ + E I
Sbjct: 465 TRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTI 524
Query: 242 SGNFSTCPKGSDKATPRDLNYPSMAAQVSPGRSFTI---NFSRTVTNVGLANTTYKAKIL 298
+ + ++ + A DLNYPS A S +FT+ F RTVTNVG TYKAK+
Sbjct: 525 ARSSASHNCSNPSA---DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLK 581
Query: 299 QNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTIVSTSLIWAD--GNHNVRSPIV 356
+ V PQ L FK+ NEK+S+ +T+ G + S+ W + GNH+VRSPIV
Sbjct: 582 APKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 80 AEILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLF 139
++++T A+ D V+ FSSRGP A + LKP++ APG I+AA + G +G P+
Sbjct: 295 SKVITVGAVDKYD--VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARAS-GTSMGQPIN 349
Query: 140 KRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFA 199
Y+ GT+M+ PHVAG+AA + HP W+P +K+A++ TA + ++ A+ A
Sbjct: 350 DY---YTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIV--KPDEIADIA 404
Query: 200 FGSGHINPVEA 210
+G+G +N +A
Sbjct: 405 YGAGRVNAYKA 415
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 28/112 (25%)
Query: 99 FSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHV 158
FSS GP + D+ APGV I + P G Y LSGTSM+ PHV
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-PGG------------KYGALSGTSMASPHV 218
Query: 159 AGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEA 210
AG AA + S HP+W+ + ++S++ TA + S F +G G IN VEA
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTATKLGDS------FYYGKGLIN-VEA 263
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 57/112 (50%), Gaps = 28/112 (25%)
Query: 99 FSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHV 158
FSS GP + D+ APGV I + P G Y LSGT+M+ PHV
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-PGG------------KYGALSGTAMASPHV 218
Query: 159 AGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEA 210
AG AA + S HP+W+ + ++S++ TA + S F +G G IN VEA
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTATKLGDS------FYYGKGLIN-VEA 263
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 16/103 (15%)
Query: 115 DISAPGVDILAAF-SPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV----KSFH 169
D++APG DIL+ S P+ D YS ++GTSM+ PHV+GVAA V S +
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSD-------AYSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 170 PDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVN 212
+ +P+ +K +++T P N ++ A GSG ++ AVN
Sbjct: 298 KNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVDAEAAVN 336
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 16/103 (15%)
Query: 115 DISAPGVDILAAF-SPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV----KSFH 169
D++APG DIL+ S P+ D YS ++GTSM+ PHV+GVAA V S +
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSD-------AYSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 170 PDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVN 212
+ +P+ +K +++T P N ++ A GSG ++ AVN
Sbjct: 298 KNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVDAEAAVN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 16/103 (15%)
Query: 115 DISAPGVDILAAF-SPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV----KSFH 169
D++APG DIL+ S P+ D YS ++GTSM+ PHV+GVAA V S +
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSD-------AYSFMAGTSMATPHVSGVAALVISAANSVN 297
Query: 170 PDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVN 212
+ +P+ +K +++T P N ++ A GSG ++ AVN
Sbjct: 298 KNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVDAEAAVN 336
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 144 TYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203
TY+ L+GTSM+ PHVAG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKG 265
Query: 204 HINPVEA 210
IN VEA
Sbjct: 266 LIN-VEA 271
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 144 TYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203
TY+ L+GTSM+ PHVAG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKG 265
Query: 204 HINPVEA 210
IN VEA
Sbjct: 266 LIN-VEA 271
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 144 TYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203
TY+ L+GTSM+ PHVAG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKG 265
Query: 204 HINPVEA 210
IN VEA
Sbjct: 266 LIN-VEA 271
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 144 TYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203
TY+ L+GTSM+ PHVAG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 213 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKG 266
Query: 204 HINPVEA 210
IN VEA
Sbjct: 267 LIN-VEA 272
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 144 TYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203
TY+ L+GTSM+ PHVAG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 213 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKG 266
Query: 204 HINPVEA 210
IN VEA
Sbjct: 267 LIN-VEA 272
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL---------PGNK----YGAYSGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 28/114 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTSMASP 216
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEA 210
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 263
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 28/114 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I++ P K Y SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTL---------PGNK----YGAKSGTAMASP 216
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEA 210
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 263
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 144 TYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203
TY+ L+GTSM+ PHVAG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKG 265
Query: 204 HINPVEA 210
IN VEA
Sbjct: 266 LIN-VEA 271
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTSMASP 216
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + +S F +G G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS------FYYGKGLIN 260
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 28/114 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEA 210
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 272
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS------FYYGKGLIN 269
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS------FYYGKGLIN 269
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GTSM+ PHVAGVAA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + ++ +GSG +N
Sbjct: 238 VQIRNHLKNTATGLGNTN------LYGSGLVN 263
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
D+ APGV I + P G TY +GTSM+ PHVAG AA + S HP W+
Sbjct: 197 DVMAPGVSIQSTL-PGG------------TYGAYNGTSMATPHVAGAAALILSKHPTWTN 243
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
+ ++ + +TA + SS F +G G IN
Sbjct: 244 AQVRDRLESTATYLGSS------FYYGKGLIN 269
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GTSM+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL---------PGNK----YGAYSGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS------FYYGKGLIN 269
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GTSM+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GTSM+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GTSM+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I++ P K Y SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTL---------PGNK----YGAKSGTAMASP 216
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GTSM+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAKSGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 28/114 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGT M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL---------PGNK----YGAKSGTXMASP 216
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEA 210
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 263
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query: 144 TYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203
TY+ L+GT M+ PHVAG AA + S HP+ S S +++ + +TA + SS F +G G
Sbjct: 212 TYATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKG 265
Query: 204 HINPVEA 210
IN VEA
Sbjct: 266 LIN-VEA 271
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 28/114 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGT M+ P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSIWSTL---------PGNK----YGAKSGTXMASP 213
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEA 210
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN VEA
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN-VEA 260
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYSGTXMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYSGTXMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAKSGTXMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GT M+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GT M+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GT M+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APGV++ + + TY+ L+GT M+ PHVAG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
I++ + TA + S+ +GSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y +GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTXMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y +GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTXMASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
D+ APGV I + P G TY +GT M+ PHVAG AA + S HP W+
Sbjct: 197 DVMAPGVSIQSTL-PGG------------TYGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
+ ++ + +TA + +S F +G G IN
Sbjct: 244 AQVRDRLESTATYLGNS------FYYGKGLIN 269
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCP 156
A FSS GP + D+ APGV I + P K Y +GTS + P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSXASP 225
Query: 157 HVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
HVAG AA + S HP+W+ + ++S++ T + S F +G G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
D+ APGV I + P G TY +GT M+ PHVAG AA + S HP W+
Sbjct: 197 DVMAPGVSIQSTL-PGG------------TYGAYNGTCMATPHVAGAAALILSKHPTWTN 243
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
+ ++ + +TA + +S F +G G IN
Sbjct: 244 AQVRDRLESTATYLGNS------FYYGKGLIN 269
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 145 YSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGH 204
Y +GTSM+ PHV+GVA V S+HP+ S S +++A+ TA + S +D + + G
Sbjct: 362 YEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDL-SVAGRDNQTGY--GM 418
Query: 205 INPVEA 210
IN V A
Sbjct: 419 INAVAA 424
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Query: 144 TYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203
TY+ L+GTSM+ PHVAG AA + S +P S S +++ + +TA + S F +G G
Sbjct: 212 TYTSLNGTSMASPHVAGAAALILSKYPTLSASQVRNRLSSTATNLGDS------FYYGKG 265
Query: 204 HINPVEA 210
IN VEA
Sbjct: 266 LIN-VEA 271
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 21/106 (19%)
Query: 80 AEILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLF 139
AE LT A T SDA A FS+ G D+ APG I +A+ +
Sbjct: 171 AEALTVGATTSSDAR--ASFSNYGS--------CVDLFAPGASIPSAW-----------Y 209
Query: 140 KRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTA 185
L+GTSM+ PHVAGVAA +P +P+++ SAI+ A
Sbjct: 210 TSDTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 96 VAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSC 155
VA FSSRGP + +KPD+ APG IL+A S P Y+ + GTSM+
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSL-APDSSFWANHDSKYAYMGGTSMAT 258
Query: 156 PHVAGVAA-----YVKSFHPDWSPSAIKSAIMTTA 185
P VAG A +VK+ PS +K+A++ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 313
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 314 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADA 372
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 373 LGPT-GWDADYGYG 385
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 21/91 (23%)
Query: 112 LKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVK----S 167
+KPDI+APG DIL++ + Y+ LSGTSMS P VAG+ ++ +
Sbjct: 389 IKPDIAAPGQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYET 435
Query: 168 FHPDWSPSA----IKSAIMTTARPMNSSKNK 194
+PD +PS K +M++A + K
Sbjct: 436 QYPDMTPSERLDLAKKVLMSSATALYDEDEK 466
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 313
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 314 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 372
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 373 LGPT-GWDADYGYG 385
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 313
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 314 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 372
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 373 LGPT-GWDADYGYG 385
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 313
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 314 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 372
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 373 LGPT-GWDADYGYG 385
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 96 VAGFSSRGPNEIAPD--ILKPD--ISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGT 151
VA FSSRG A D I K D ISAPG + + + G Y+ +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-------------YATISGT 248
Query: 152 SMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTA 185
SM+ PH AG+AA + + P S ++ + T A
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA 282
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 275 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 310
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 311 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 369
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 370 LGPT-GWDADYGYG 382
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 209 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 244
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 245 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 303
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 304 LGPT-GWDADYGYG 316
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 17/98 (17%)
Query: 96 VAGFSSRGPNEIAPDIL----KPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGT 151
VA +SSRG A D + +ISAPG + + + G Y+ +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-------------YNTISGT 249
Query: 152 SMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMN 189
SM+ PHV+G+AA + + +P S + ++S + A+ ++
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 233
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 234 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 292
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 293 LGPT-GWDADYGYG 305
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 209 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 244
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 245 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 303
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 304 LGPT-GWDADYGYG 316
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 200 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 235
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT+M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 236 -DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 294
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 295 LGPT-GWDADYGYG 307
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 233
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 234 -DDSYETLMGTXMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 292
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 293 LGPT-GWDADYGYG 305
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 39/134 (29%)
Query: 81 EILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFK 140
E++ AI +D +A FS+R +P++SAPGVDIL+ +
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTYP------------ 233
Query: 141 RQLTYSILSGTSMSCPHVAGVAAYVKSFH-------------PDWSPSAIKSAIMTTARP 187
+Y L GT M+ PHV+GV A +++ + D S + ++ + TA
Sbjct: 234 -DDSYETLMGTCMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 292
Query: 188 MNSSKNKDAEFAFG 201
+ + DA++ +G
Sbjct: 293 LGPT-GWDADYGYG 305
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 30/149 (20%)
Query: 82 ILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKR 141
+L A+ D PV FS+ G K I APG DIL A P G I
Sbjct: 174 VLAVGAMDDQGKPV--DFSNWGDA-----YQKQGILAPGKDILGA-KPNGGTIR------ 219
Query: 142 QLTYSILSGTSMSCPHVAGVAAYVKSFH------PDWSPSAIKSAIMTTARPMNSSKNKD 195
LSGTS + P V+GVAA + S PD P +K+A++ +A P N K+ D
Sbjct: 220 ------LSGTSFATPIVSGVAALLLSLQIKRGEKPD--PQKVKNALLASATPCN-PKDTD 270
Query: 196 AEFAFGSGHINPVEAVNPGLVYETFEQDY 224
+ G +N ++A+ L ET +D
Sbjct: 271 DQSRCLMGKLNILDAIE-HLTGETMSEDL 298
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 96 VAGFSSRGPNEIAPDIL----KPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGT 151
VA +SSRG A D + +ISAPG + + + G Y+ +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-------------YNTISGT 249
Query: 152 SMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMN 189
M+ PHV+G+AA + + +P S + ++S + A+ ++
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 96 VAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSC 155
VA FSSRGP + +KPD+ APG IL+A S P Y+ GTS +
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSL-APDSSFWANHDSKYAYXGGTSXAT 258
Query: 156 PHVAGVAA-----YVKSFHPDWSPSAIKSAIMTTA 185
P VAG A +VK+ PS +K+A++ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI APG I +++ + + +SGTSM+ PHVAGVAA +P+ SP
Sbjct: 198 DIYAPGSSITSSW-----------YTSNSATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 175 SAIKSAIMTTA 185
+ + + + T A
Sbjct: 247 AQVTNLLKTRA 257
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 17/68 (25%)
Query: 112 LKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVK----S 167
+KPDI+APG DIL++ + Y+ LSGTS S P VAG+ ++ +
Sbjct: 380 IKPDIAAPGQDILSSVA-------------NNKYAKLSGTSXSAPLVAGIXGLLQKQYET 426
Query: 168 FHPDWSPS 175
+PD +PS
Sbjct: 427 QYPDXTPS 434
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 20/97 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
D++APG I + + TY+ LSGTSM+ PHVAGVA + S S
Sbjct: 201 DVAAPGSSIYSTYP-------------TSTYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAV 211
S I++AI TA ++ + A+ G +N +AV
Sbjct: 246 SNIRAAIENTADKISGTGTYWAK-----GRVNAYKAV 277
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 116 ISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV----KSFHPD 171
++APG +IL S V P+ + +Y + +GTSM+ PHV+GVAA V S
Sbjct: 247 LAAPGTNIL---STIDVGQAGPV---RSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 172 WSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFE 221
+PS + ++ T N ++ GSG ++ AVN L + E
Sbjct: 301 LTPSELSDILVRTTSRFNGRLDR----GLGSGIVDANAAVNAVLGDQNLE 346
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 116 ISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV----KSFHPD 171
++APG +IL S V P+ + +Y + +GTSM+ PHV+GVAA V S
Sbjct: 247 LAAPGTNIL---STIDVGQAGPV---RSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 172 WSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFE 221
+PS + ++ T N ++ GSG ++ AVN L + E
Sbjct: 301 LTPSELSDILVRTTSRFNGRLDR----GLGSGIVDANAAVNAVLGDQNLE 346
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 96 VAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQL------TYSILS 149
VAGFSSR + APGV IL+ P IG + TY
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTV-PGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 150 GTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSS 191
GTSM+ PHV GV A + P+ P I+ + TA N +
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN 420
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
D+ APGVDI++ + R Y+ +SGTSM+ PHVAG+AA + S +
Sbjct: 202 DVVAPGVDIVSTITG----------NR---YAYMSGTSMASPHVAGLAALLASQGRN--N 246
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAV 211
I+ AI TA ++ + F G IN AV
Sbjct: 247 IEIRQAIEQTADKISGTGTY-----FKYGRINSYNAV 278
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 20/97 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
D++APG I + + TY+ LSGTSM+ PHVAGVA + S S
Sbjct: 201 DVAAPGSWIYSTYP-------------TSTYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 175 SAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAV 211
S I++AI TA ++ + A+ G +N +AV
Sbjct: 246 SNIRAAIENTADKISGTGTYWAK-----GRVNAYKAV 277
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI PG DIL+ + IG T SI SGTSM+ PHVAG+AAY+ + +
Sbjct: 200 DIFGPGTDILSTW------IGGS------TRSI-SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 175 SAIK 178
SA +
Sbjct: 247 SACR 250
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV-----KSFH 169
DI APGV I + + G Y+ LSGT+M+ PHVAG A + +F
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 170 PDWSPSAIKSAIMTTARPM 188
S + I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV-----KSFH 169
DI APGV I + + G Y+ LSGT+M+ PHVAG A + +F
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 170 PDWSPSAIKSAIMTTARPM 188
S + I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV-----KSFH 169
DI APGV I + + G Y+ LSGT+M+ PHVAG A + +F
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 170 PDWSPSAIKSAIMTTARPM 188
S + I + ++ A P+
Sbjct: 273 RSLSETEIYAQLVRRATPI 291
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV-----KSFH 169
DI APGV I + + G Y+ LSGT+M+ PHVAG A + +F
Sbjct: 208 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 254
Query: 170 PDWSPSAIKSAIMTTARPM 188
S + I + ++ A P+
Sbjct: 255 RSLSETEIYAQLVRRATPI 273
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI PG IL+ + IG T SI SGTSM+ PHVAG+AAY+ + +
Sbjct: 200 DIFGPGTSILSTW------IGGS------TRSI-SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 175 SAIK 178
SA +
Sbjct: 247 SACR 250
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174
DI PG IL+ + IG T SI SGTSM+ PHVAG+AAY+ + +
Sbjct: 200 DIFGPGTSILSTW------IGGS------TRSI-SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 175 SAIK 178
SA +
Sbjct: 247 SACR 250
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 23/91 (25%)
Query: 79 EAEILTTEAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPL 138
E + T A T SDA + FS+ G N + DI APG +IL+ + IG
Sbjct: 177 EPTVCTVGATTSSDAR--SSFSNYG-NLV-------DIFAPGSNILSTW------IGG-- 218
Query: 139 FKRQLTYSILSGTSMSCPHVAGVAAYVKSFH 169
T + +SGTSM+ PH+ G+ AY+
Sbjct: 219 -----TTNTISGTSMATPHIVGLGAYLAGLE 244
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 115 DISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAA 163
D+ APG I +A+ G Y +SGTSM+ PHVAGVAA
Sbjct: 196 DLFAPGSQIKSAWYDGG-------------YKTISGTSMATPHVAGVAA 231
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 146 SILSGTSMSCPHVAGVAAY----VKSFHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFG 201
+ +GTS + PHVAG A +K + ++SP +IK AI TA + FA G
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD----PFAQG 511
Query: 202 SGHIN 206
G +N
Sbjct: 512 HGLLN 516
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 95 VVAGFSSRGPNEIAPDILKPDISAPGV----DILAAFSPFG--VPIGDPLFKRQLTY--- 145
V AG +R +P +P + G D+ + FS +G V I P T+
Sbjct: 158 VAAGNDNRDAANTSP-ASEPTVCTVGATDSNDVRSTFSNYGRVVDIFAPGTSITSTWIGG 216
Query: 146 --SILSGTSMSCPHVAGVAAYV 165
+ +SGTSM+ PH+AG+AAY+
Sbjct: 217 RTNTISGTSMATPHIAGLAAYL 238
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 99 FSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHV 158
FS+ G N IL APG +IL A P+ L+GTSM+ P +
Sbjct: 256 FSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR------------LTGTSMAAPVM 298
Query: 159 AGVAAYVKSFHPDW----SPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
G++A + S A+++A++ TA P + ++ E G +N
Sbjct: 299 TGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPERCL-RGFVN 349
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 22/97 (22%)
Query: 116 ISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFH------ 169
I APG DIL A P G LSGTS + P V+GVAA + S
Sbjct: 207 ILAPGEDILGA-KPGG------------GTERLSGTSFATPIVSGVAALLLSEQVRRGET 253
Query: 170 PDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
PD P ++ ++ +A P + + A +G +N
Sbjct: 254 PD--PQKVRQLLLQSALPCDDDAPEQARRCL-AGRLN 287
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 99 FSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHV 158
FS+ G N IL APG +IL A P+ L+GTSM+ P +
Sbjct: 256 FSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR------------LTGTSMAAPVM 298
Query: 159 AGVAAYVKSFHPDW----SPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
G++A + S A+++A++ TA P + ++ E G +N
Sbjct: 299 TGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPERCL-RGFVN 349
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 22/97 (22%)
Query: 116 ISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFH------ 169
I APG DIL A P G LSGTS + P V+GVAA + S
Sbjct: 198 ILAPGEDILGA-KPGG------------GTERLSGTSFATPIVSGVAALLLSEQVRRGET 244
Query: 170 PDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
PD P ++ ++ +A P + + A +G +N
Sbjct: 245 PD--PQKVRQLLLQSALPCDDDAPEQARRCL-AGRLN 278
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 99 FSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHV 158
FS+ G N IL APG +IL A P+ L+GTSM+ P +
Sbjct: 238 FSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR------------LTGTSMAAPVM 280
Query: 159 AGVAAYVKSFHPDW----SPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHIN 206
G++A + S A+++A++ TA P + ++ E G +N
Sbjct: 281 TGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPERCL-RGFVN 331
>pdb|1B2O|A Chain A, Clostridium Pasteurianum Rubredoxin G10vg43a Mutant
pdb|1B2O|B Chain B, Clostridium Pasteurianum Rubredoxin G10vg43a Mutant
Length = 54
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 206 NPVEAVNPGLVYETFEQDYIIMLCSMGYDE 235
+P VNPG ++ D++ LC++G D+
Sbjct: 19 DPDNGVNPGTDFKDIPDDWVCPLCAVGKDQ 48
>pdb|1B2J|A Chain A, Clostridium Pasteurianum Rubredoxin G43a Mutant
Length = 54
Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 206 NPVEAVNPGLVYETFEQDYIIMLCSMGYDE 235
+P VNPG ++ D++ LC++G D+
Sbjct: 19 DPDNGVNPGTDFKDIPDDWVCPLCAVGKDQ 48
>pdb|1T9Q|A Chain A, Crystal Structure Of V44l Cp Rubredoxin
Length = 54
Score = 27.7 bits (60), Expect = 9.8, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 206 NPVEAVNPGLVYETFEQDYIIMLCSMGYDE 235
+P VNPG ++ D++ LC +G D+
Sbjct: 19 DPDNGVNPGTDFKDIPDDWVCPLCGLGKDQ 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,593,843
Number of Sequences: 62578
Number of extensions: 424125
Number of successful extensions: 813
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 116
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)