Query 036163
Match_columns 361
No_of_seqs 314 out of 2705
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05562 Peptidases_S53_like Pe 99.8 3.2E-20 7E-25 176.4 8.0 98 97-212 176-274 (275)
2 cd07478 Peptidases_S8_CspA-lik 99.8 7.5E-20 1.6E-24 185.2 9.9 116 71-203 328-455 (455)
3 cd07475 Peptidases_S8_C5a_Pept 99.8 6.9E-19 1.5E-23 172.0 9.3 106 92-212 230-346 (346)
4 cd07497 Peptidases_S8_14 Pepti 99.8 9.8E-19 2.1E-23 169.0 8.6 88 93-185 218-311 (311)
5 cd07474 Peptidases_S8_subtilis 99.8 1.9E-18 4.2E-23 165.0 9.7 107 92-210 188-295 (295)
6 cd07489 Peptidases_S8_5 Peptid 99.7 2.3E-18 5E-23 166.2 8.5 107 97-216 189-302 (312)
7 cd07479 Peptidases_S8_SKI-1_li 99.7 1.1E-17 2.5E-22 157.2 8.7 88 89-189 159-254 (255)
8 cd04857 Peptidases_S8_Tripepti 99.7 1.5E-17 3.3E-22 165.1 8.5 83 93-188 326-412 (412)
9 cd05561 Peptidases_S8_4 Peptid 99.7 2E-17 4.4E-22 154.1 8.6 90 89-203 150-239 (239)
10 PTZ00262 subtilisin-like prote 99.7 8E-18 1.7E-22 173.0 6.1 89 113-218 531-619 (639)
11 cd07493 Peptidases_S8_9 Peptid 99.7 3.5E-17 7.6E-22 154.1 8.5 83 89-186 179-261 (261)
12 cd04847 Peptidases_S8_Subtilis 99.7 3E-17 6.5E-22 157.0 7.4 87 98-186 200-291 (291)
13 PF00082 Peptidase_S8: Subtila 99.7 9.1E-18 2E-22 158.7 3.6 111 91-212 172-282 (282)
14 cd07481 Peptidases_S8_Bacillop 99.7 6.6E-17 1.4E-21 152.5 8.6 85 87-186 178-264 (264)
15 cd07487 Peptidases_S8_1 Peptid 99.6 8E-16 1.7E-20 144.3 9.7 85 96-186 180-264 (264)
16 cd07476 Peptidases_S8_thiazoli 99.6 7.9E-16 1.7E-20 145.8 8.7 85 89-191 167-255 (267)
17 cd07483 Peptidases_S8_Subtilis 99.6 1.9E-15 4E-20 144.9 11.2 72 95-186 220-291 (291)
18 cd04843 Peptidases_S8_11 Pepti 99.6 5.6E-15 1.2E-19 140.7 8.3 81 95-186 192-277 (277)
19 cd04077 Peptidases_S8_PCSK9_Pr 99.6 7.7E-15 1.7E-19 137.5 8.4 80 89-187 176-255 (255)
20 cd04842 Peptidases_S8_Kp43_pro 99.6 9.6E-15 2.1E-19 139.2 9.1 85 96-186 201-293 (293)
21 cd07490 Peptidases_S8_6 Peptid 99.5 1.3E-14 2.7E-19 135.7 8.1 87 90-186 158-254 (254)
22 cd07498 Peptidases_S8_15 Pepti 99.5 2.3E-14 5E-19 133.1 7.4 84 89-184 159-242 (242)
23 cd04852 Peptidases_S8_3 Peptid 99.5 2.3E-14 5E-19 138.1 7.1 72 112-186 236-307 (307)
24 cd07496 Peptidases_S8_13 Pepti 99.5 4.8E-14 1E-18 134.5 8.5 89 88-184 195-285 (285)
25 cd07485 Peptidases_S8_Fervidol 99.5 4.3E-14 9.2E-19 134.0 7.9 82 88-184 190-273 (273)
26 cd02133 PA_C5a_like PA_C5a_lik 99.5 1.4E-13 3E-18 118.5 9.8 95 6-105 38-141 (143)
27 cd07480 Peptidases_S8_12 Pepti 99.5 5.7E-14 1.2E-18 134.8 8.1 98 94-208 197-296 (297)
28 cd04059 Peptidases_S8_Protein_ 99.5 5.9E-14 1.3E-18 134.2 7.3 80 89-186 211-297 (297)
29 cd07484 Peptidases_S8_Thermita 99.5 7.7E-14 1.7E-18 131.0 7.8 78 89-188 182-259 (260)
30 cd07477 Peptidases_S8_Subtilis 99.5 8.6E-14 1.9E-18 127.9 7.9 76 88-184 154-229 (229)
31 cd07473 Peptidases_S8_Subtilis 99.5 1E-13 2.2E-18 129.9 8.5 78 89-186 182-259 (259)
32 cd07494 Peptidases_S8_10 Pepti 99.4 2.2E-13 4.8E-18 131.0 8.8 78 109-191 195-288 (298)
33 cd07488 Peptidases_S8_2 Peptid 99.4 1.1E-13 2.3E-18 129.8 6.1 74 96-184 167-246 (247)
34 KOG1114 Tripeptidyl peptidase 99.4 6.2E-13 1.4E-17 138.6 8.5 101 95-212 453-557 (1304)
35 cd07492 Peptidases_S8_8 Peptid 99.4 4.6E-13 9.9E-18 123.0 6.3 62 112-186 161-222 (222)
36 cd07482 Peptidases_S8_Lantibio 99.4 7.4E-13 1.6E-17 126.2 7.5 90 88-184 195-294 (294)
37 cd04848 Peptidases_S8_Autotran 99.4 7E-13 1.5E-17 123.9 6.8 82 89-186 184-267 (267)
38 KOG1153 Subtilisin-related pro 99.2 4.1E-12 8.8E-17 124.0 3.2 82 86-186 371-461 (501)
39 KOG4266 Subtilisin kexin isozy 99.2 1E-11 2.2E-16 124.8 4.5 106 90-212 352-465 (1033)
40 cd04816 PA_SaNapH_like PA_SaNa 99.2 5.9E-11 1.3E-15 99.4 8.2 77 2-81 32-121 (122)
41 cd02120 PA_subtilisin_like PA_ 99.2 8.6E-11 1.9E-15 98.4 8.3 78 2-82 40-126 (126)
42 cd07491 Peptidases_S8_7 Peptid 99.1 4.1E-11 9E-16 112.3 5.5 62 89-168 168-229 (247)
43 cd02130 PA_ScAPY_like PA_ScAPY 99.1 3.9E-10 8.5E-15 94.4 8.3 74 6-81 36-121 (122)
44 cd04818 PA_subtilisin_1 PA_sub 99.1 6.2E-10 1.4E-14 92.5 8.7 76 2-81 30-117 (118)
45 cd00306 Peptidases_S8_S53 Pept 99.1 3.3E-10 7.2E-15 103.0 7.6 62 112-184 180-241 (241)
46 PF02225 PA: PA domain; Inter 99.0 1.4E-10 3.1E-15 93.0 4.1 66 6-72 24-101 (101)
47 cd02122 PA_GRAIL_like PA _GRAI 99.0 7E-10 1.5E-14 94.9 8.6 73 10-82 55-138 (138)
48 cd00538 PA PA: Protease-associ 99.0 7.3E-10 1.6E-14 92.3 8.5 77 2-81 33-125 (126)
49 cd02127 PA_hPAP21_like PA_hPAP 99.0 2E-09 4.4E-14 89.7 9.0 72 11-82 30-116 (118)
50 cd02129 PA_hSPPL_like PA_hSPPL 99.0 1.7E-09 3.8E-14 90.0 7.6 71 2-75 33-115 (120)
51 cd04817 PA_VapT_like PA_VapT_l 99.0 2.5E-09 5.4E-14 91.4 8.6 67 8-75 49-134 (139)
52 cd02126 PA_EDEM3_like PA_EDEM3 99.0 2.5E-09 5.4E-14 90.1 8.4 72 10-81 35-125 (126)
53 cd02132 PA_GO-like PA_GO-like: 98.9 2.9E-09 6.4E-14 91.2 8.1 69 12-81 56-138 (139)
54 cd02125 PA_VSR PA_VSR: Proteas 98.9 6E-09 1.3E-13 87.9 8.7 68 13-81 40-126 (127)
55 cd04813 PA_1 PA_1: Protease-as 98.9 5.5E-09 1.2E-13 86.9 8.2 67 9-75 33-112 (117)
56 cd02124 PA_PoS1_like PA_PoS1_l 98.9 6.2E-09 1.3E-13 88.1 8.1 68 12-81 52-128 (129)
57 cd02123 PA_C_RZF_like PA_C-RZF 98.7 4.8E-08 1E-12 85.1 8.5 65 12-77 64-142 (153)
58 PF06280 DUF1034: Fn3-like dom 98.7 1.3E-07 2.7E-12 77.9 10.3 81 275-356 8-112 (112)
59 cd04819 PA_2 PA_2: Protease-as 98.7 4.7E-08 1E-12 82.4 7.6 69 7-76 36-121 (127)
60 COG1404 AprE Subtilisin-like s 98.4 1E-06 2.2E-11 88.5 8.5 100 92-212 314-420 (508)
61 cd04815 PA_M28_2 PA_M28_2: Pro 98.2 3.8E-06 8.1E-11 71.6 6.9 72 9-81 33-133 (134)
62 cd02128 PA_TfR PA_TfR: Proteas 98.0 1.2E-05 2.6E-10 71.8 5.6 65 11-75 51-156 (183)
63 cd04822 PA_M28_1_3 PA_M28_1_3: 97.4 0.00045 9.8E-09 59.9 6.9 65 7-71 39-131 (151)
64 KOG2442 Uncharacterized conser 97.4 0.00042 9E-09 69.3 7.2 72 10-82 90-175 (541)
65 cd04056 Peptidases_S53 Peptida 97.4 0.00025 5.5E-09 70.1 5.5 48 109-170 249-299 (361)
66 cd02121 PA_GCPII_like PA_GCPII 97.3 0.00046 9.9E-09 63.6 5.5 33 11-43 67-104 (220)
67 cd04814 PA_M28_1 PA_M28_1: Pro 97.2 0.00079 1.7E-08 57.8 6.5 39 6-44 38-99 (142)
68 cd04820 PA_M28_1_1 PA_M28_1_1: 97.2 0.00045 9.7E-09 59.0 4.6 38 6-43 40-94 (137)
69 cd02131 PA_hNAALADL2_like PA_h 97.1 0.0005 1.1E-08 59.3 3.8 33 12-44 37-74 (153)
70 PF14874 PapD-like: Flagellar- 97.1 0.014 3E-07 46.7 12.0 92 258-358 9-100 (102)
71 PF10633 NPCBM_assoc: NPCBM-as 96.2 0.028 6.1E-07 42.9 7.4 58 275-332 5-63 (78)
72 KOG4628 Predicted E3 ubiquitin 95.8 0.021 4.7E-07 55.7 6.7 64 12-76 76-151 (348)
73 cd04821 PA_M28_1_2 PA_M28_1_2: 95.5 0.026 5.6E-07 49.4 5.1 37 7-43 41-101 (157)
74 KOG3526 Subtilisin-like propro 95.2 0.0015 3.3E-08 63.5 -3.5 84 146-232 379-474 (629)
75 PF11614 FixG_C: IG-like fold 95.1 0.24 5.1E-06 40.8 9.6 58 275-333 31-88 (118)
76 PF06030 DUF916: Bacterial pro 92.7 2.5 5.3E-05 35.3 11.3 69 275-345 27-119 (121)
77 KOG3920 Uncharacterized conser 90.6 0.25 5.4E-06 42.8 3.1 65 10-75 82-164 (193)
78 PF00345 PapD_N: Pili and flag 90.1 4 8.7E-05 33.5 10.0 68 276-345 15-89 (122)
79 PF00635 Motile_Sperm: MSP (Ma 86.3 6.6 0.00014 31.2 8.8 54 275-331 18-71 (109)
80 COG1470 Predicted membrane pro 85.0 7.6 0.00016 39.6 10.0 70 275-344 397-467 (513)
81 TIGR02745 ccoG_rdxA_fixG cytoc 84.6 5.4 0.00012 40.6 9.0 56 275-331 346-401 (434)
82 COG1470 Predicted membrane pro 81.0 25 0.00055 35.9 11.9 70 259-331 270-345 (513)
83 smart00635 BID_2 Bacterial Ig- 80.9 5.9 0.00013 30.2 6.1 40 304-348 4-43 (81)
84 COG4934 Predicted protease [Po 80.1 1.5 3.2E-05 49.3 3.2 26 144-169 472-497 (1174)
85 PF07718 Coatamer_beta_C: Coat 77.7 11 0.00024 32.3 7.1 46 298-345 93-138 (140)
86 PF07705 CARDB: CARDB; InterP 64.5 61 0.0013 24.7 9.1 52 275-330 19-72 (101)
87 PF14016 DUF4232: Protein of u 63.6 85 0.0018 26.0 9.9 78 275-355 18-112 (131)
88 PLN03080 Probable beta-xylosid 62.1 35 0.00075 37.5 8.6 78 276-354 685-778 (779)
89 PF07610 DUF1573: Protein of u 61.7 35 0.00075 23.0 5.6 43 282-327 3-45 (45)
90 PRK15308 putative fimbrial pro 60.8 72 0.0016 29.7 9.4 66 276-345 32-113 (234)
91 KOG3525 Subtilisin-like propro 58.7 5.1 0.00011 40.8 1.4 67 147-213 251-325 (431)
92 PF12690 BsuPI: Intracellular 51.0 92 0.002 23.9 7.1 20 311-331 53-72 (82)
93 PF04744 Monooxygenase_B: Mono 49.1 1.9E+02 0.0042 28.8 10.4 49 275-328 263-334 (381)
94 PF00927 Transglut_C: Transglu 48.9 1.1E+02 0.0023 24.3 7.5 55 275-331 15-78 (107)
95 KOG2195 Transferrin receptor a 43.7 23 0.0005 38.3 3.6 33 12-44 181-218 (702)
96 PF08260 Kinin: Insect kinin p 43.0 11 0.00025 16.2 0.5 6 98-103 3-8 (8)
97 PF02845 CUE: CUE domain; Int 43.0 25 0.00053 23.2 2.4 24 162-185 5-28 (42)
98 PF05506 DUF756: Domain of unk 36.6 1.9E+02 0.0042 22.1 8.8 58 276-342 19-76 (89)
99 PF11611 DUF4352: Domain of un 36.6 2.1E+02 0.0046 22.7 7.7 58 275-333 36-105 (123)
100 PF13598 DUF4139: Domain of un 36.5 2.2E+02 0.0047 27.2 8.9 9 337-345 288-296 (317)
101 TIGR01451 B_ant_repeat conserv 36.3 1.2E+02 0.0025 21.2 5.1 37 275-314 12-50 (53)
102 cd00407 Urease_beta Urease bet 36.1 75 0.0016 25.6 4.5 49 275-325 18-81 (101)
103 PF02368 Big_2: Bacterial Ig-l 35.8 18 0.00039 27.1 1.0 37 304-346 4-40 (79)
104 PRK15019 CsdA-binding activato 35.4 36 0.00077 29.4 2.8 31 148-179 79-109 (147)
105 PRK09918 putative fimbrial cha 35.4 1.8E+02 0.004 26.8 7.8 52 275-329 38-94 (230)
106 PRK15098 beta-D-glucoside gluc 35.0 97 0.0021 34.0 6.7 54 275-331 667-729 (765)
107 PF01345 DUF11: Domain of unkn 34.5 97 0.0021 22.8 4.8 30 275-305 41-72 (76)
108 PRK13203 ureB urease subunit b 34.2 73 0.0016 25.7 4.2 49 275-325 18-81 (102)
109 TIGR03391 FeS_syn_CsdE cystein 34.2 39 0.00084 28.8 2.8 33 146-179 72-104 (138)
110 PF13940 Ldr_toxin: Toxin Ldr, 33.7 32 0.00069 22.0 1.6 13 153-165 14-26 (35)
111 PF00699 Urease_beta: Urease b 33.5 2.2E+02 0.0048 22.9 6.8 49 275-325 17-80 (100)
112 PRK13202 ureB urease subunit b 33.0 87 0.0019 25.4 4.4 47 277-325 21-82 (104)
113 TIGR00192 urease_beta urease, 32.6 88 0.0019 25.2 4.4 49 275-325 18-81 (101)
114 PF04255 DUF433: Protein of un 32.3 1.1E+02 0.0023 21.6 4.5 40 143-182 9-54 (56)
115 COG2166 sufE Cysteine desulfur 30.5 46 0.001 28.6 2.7 30 148-178 74-103 (144)
116 PRK09296 cysteine desufuration 30.3 49 0.0011 28.2 2.8 32 147-179 68-99 (138)
117 COG4882 Predicted aminopeptida 29.6 86 0.0019 31.3 4.6 57 12-69 86-160 (486)
118 PF02657 SufE: Fe-S metabolism 29.6 52 0.0011 27.5 2.8 32 147-179 59-90 (125)
119 TIGR00845 caca sodium/calcium 29.6 5.7E+02 0.012 28.9 11.4 27 161-187 322-348 (928)
120 COG4856 Uncharacterized protei 27.4 1.9E+02 0.0042 28.9 6.7 53 276-330 91-147 (403)
121 PF09244 DUF1964: Domain of un 27.3 1E+02 0.0022 22.6 3.5 37 311-347 15-53 (68)
122 PRK13205 ureB urease subunit b 27.2 1E+02 0.0022 26.8 4.1 49 275-325 18-81 (162)
123 smart00546 CUE Domain that may 26.5 94 0.002 20.4 3.2 25 161-185 5-29 (43)
124 PRK13201 ureB urease subunit b 25.5 1.2E+02 0.0025 25.8 4.1 49 275-325 18-81 (136)
125 PRK13204 ureB urease subunit b 23.6 1.3E+02 0.0027 26.2 4.0 49 275-325 41-104 (159)
126 cd06475 ACD_HspB1_like Alpha c 22.6 3.6E+02 0.0077 20.6 6.3 28 289-316 8-39 (86)
127 PRK15299 fimbrial chaperone pr 22.4 6.1E+02 0.013 23.2 9.0 53 275-330 36-96 (227)
128 PF08029 HisG_C: HisG, C-termi 22.2 1.1E+02 0.0023 23.3 3.1 17 24-40 53-69 (75)
129 TIGR03079 CH4_NH3mon_ox_B meth 21.4 1E+02 0.0022 30.7 3.4 51 275-329 282-354 (399)
130 PRK09926 putative chaperone pr 21.0 6.8E+02 0.015 23.3 9.0 55 275-330 39-101 (246)
No 1
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.81 E-value=3.2e-20 Score=176.42 Aligned_cols=98 Identities=33% Similarity=0.350 Sum_probs=81.9
Q ss_pred eccCCCCCCCCCCCCCCCcEEecCC-ceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCCHH
Q 036163 97 AGFSSRGPNEIAPDILKPDISAPGV-DILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPS 175 (361)
Q Consensus 97 a~fSs~Gp~~~~~~~~KPdi~APG~-~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~ 175 (361)
+.|+++||.. +..+||||+|||+ ++.+.+.. +.|..++|||||||||||++|||+|++|.|+++
T Consensus 176 ~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~ 240 (275)
T cd05562 176 DPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPA 240 (275)
T ss_pred cCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3566777766 6789999999975 44444332 378999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCcccccccccCC
Q 036163 176 AIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVN 212 (361)
Q Consensus 176 ~ik~~L~~tA~~~~~~~~~~~~~~~G~G~vn~~~A~~ 212 (361)
|||++|+++|+++.... .+..+|||+||+.+|++
T Consensus 241 ~v~~~L~~tA~~~~~~g---~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 241 DIRDALRSTALDMGEPG---YDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHhCcccCCCC---CCCCcCcCcccHHHHhh
Confidence 99999999999876432 35689999999999986
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.80 E-value=7.5e-20 Score=185.20 Aligned_cols=116 Identities=31% Similarity=0.415 Sum_probs=92.7
Q ss_pred HhhcCCCcceeeeee-----eeeeCC-CCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccce
Q 036163 71 YLKSTKKPEAEILTT-----EAITDS-DAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLT 144 (361)
Q Consensus 71 ~~~~~~~~~~~i~~~-----~~~~~~-~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~ 144 (361)
|++..+..+++++.. ++...+ ..+.++.||||||+. ++++||||+|||++|+++.+.+ .
T Consensus 328 f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~ 392 (455)
T cd07478 328 FLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------G 392 (455)
T ss_pred eecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------c
Confidence 455555566666422 233322 345799999999987 7899999999999999998754 7
Q ss_pred eeeeCCccccHHHHHHHHHHHHhhC------CCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 036163 145 YSILSGTSMSCPHVAGVAAYVKSFH------PDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203 (361)
Q Consensus 145 y~~~sGTSmAaP~VAG~aALl~~~~------p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~G~G 203 (361)
|..++|||||||||||++|||+|++ |.|++++||++|+++|+++....+ .+.++|||
T Consensus 393 ~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~~--pn~~~GyG 455 (455)
T cd07478 393 YTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEY--PNPEWGYG 455 (455)
T ss_pred EEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCCC--CCCCCCCC
Confidence 9999999999999999999999975 567999999999999998864322 46789987
No 3
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.77 E-value=6.9e-19 Score=172.04 Aligned_cols=106 Identities=40% Similarity=0.578 Sum_probs=89.6
Q ss_pred CCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh---
Q 036163 92 DAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF--- 168 (361)
Q Consensus 92 ~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~--- 168 (361)
..+.++.||+|||.. ...+||||+|||.+|+++.... .|..++|||||||+|||++|||+|+
T Consensus 230 ~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~ 294 (346)
T cd07475 230 NGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKE 294 (346)
T ss_pred CCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999987 7899999999999999887643 7899999999999999999999997
Q ss_pred -CCCCCHHH----HHHHHHhcCCCCCCCCCCC---CCCCCCcccccccccCC
Q 036163 169 -HPDWSPSA----IKSAIMTTARPMNSSKNKD---AEFAFGSGHINPVEAVN 212 (361)
Q Consensus 169 -~p~~s~~~----ik~~L~~tA~~~~~~~~~~---~~~~~G~G~vn~~~A~~ 212 (361)
+|.|++.+ ||++|++||.+........ .+..+|+|+||+.+|++
T Consensus 295 ~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 295 KYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred hCCCCCHHHHHHHHHHHHHhcCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 78899877 7889999998543322221 56788999999999985
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.76 E-value=9.8e-19 Score=168.97 Aligned_cols=88 Identities=31% Similarity=0.398 Sum_probs=73.5
Q ss_pred CCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCC--
Q 036163 93 APVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHP-- 170 (361)
Q Consensus 93 ~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-- 170 (361)
.+.++.||||||.. ++++||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++|
T Consensus 218 ~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~ 292 (311)
T cd07497 218 SGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEK 292 (311)
T ss_pred CCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhh
Confidence 46789999999988 78999999999999999876542100 011234799999999999999999999999876
Q ss_pred ----CCCHHHHHHHHHhcC
Q 036163 171 ----DWSPSAIKSAIMTTA 185 (361)
Q Consensus 171 ----~~s~~~ik~~L~~tA 185 (361)
.++|++||++|++||
T Consensus 293 ~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 293 EGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
No 5
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.76 E-value=1.9e-18 Score=164.96 Aligned_cols=107 Identities=45% Similarity=0.711 Sum_probs=88.5
Q ss_pred CCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCC
Q 036163 92 DAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPD 171 (361)
Q Consensus 92 ~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 171 (361)
.......|+++|+.. ....+||||+|||++|++++... ...|..++|||||||+|||++|||+|++|.
T Consensus 188 ~~~~~~~~~s~~~~~-~~~~~kpdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~ 255 (295)
T cd07474 188 EADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPD 255 (295)
T ss_pred CCCceeccCCCCCCC-CCCCcCCCEECCcCceEeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCC
Confidence 344566666665533 27889999999999999988753 237899999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCCC-CCCCCCccccccccc
Q 036163 172 WSPSAIKSAIMTTARPMNSSKNKD-AEFAFGSGHINPVEA 210 (361)
Q Consensus 172 ~s~~~ik~~L~~tA~~~~~~~~~~-~~~~~G~G~vn~~~A 210 (361)
|++++||++|++||.+........ ....+|+|+||+.+|
T Consensus 256 l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 256 WSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 999999999999999886644332 357899999999987
No 6
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.75 E-value=2.3e-18 Score=166.22 Aligned_cols=107 Identities=35% Similarity=0.514 Sum_probs=92.7
Q ss_pred eccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhC-CCCCHH
Q 036163 97 AGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFH-PDWSPS 175 (361)
Q Consensus 97 a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~~s~~ 175 (361)
+.||+|||.. +...|||++|||++++++++.. .+.|..++|||||||+|||++|||++++ |.+++.
T Consensus 189 ~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~ 255 (312)
T cd07489 189 SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA-----------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPA 255 (312)
T ss_pred CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC-----------CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 7899999987 6889999999999999988764 1368999999999999999999999999 999999
Q ss_pred HHHHHHHhcCCCCCCCCCCC------CCCCCCcccccccccCCCCcc
Q 036163 176 AIKSAIMTTARPMNSSKNKD------AEFAFGSGHINPVEAVNPGLV 216 (361)
Q Consensus 176 ~ik~~L~~tA~~~~~~~~~~------~~~~~G~G~vn~~~A~~~~lv 216 (361)
+|+++|++||.++...+... ....+|+|+||+.+|+...-.
T Consensus 256 ~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 256 ELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred HHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCCcc
Confidence 99999999998876543221 347899999999999996544
No 7
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.72 E-value=1.1e-17 Score=157.24 Aligned_cols=88 Identities=31% Similarity=0.343 Sum_probs=75.7
Q ss_pred eCCCCCeeeccCCCCCCCC----CCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHH
Q 036163 89 TDSDAPVVAGFSSRGPNEI----APDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAY 164 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~----~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 164 (361)
..+..+.++.|||+|+... ..+.+||||.|||.+|+++.... .|..++|||||||||||++||
T Consensus 159 a~~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAl 225 (255)
T cd07479 159 GIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG-------------GCRALSGTSVASPVVAGAVAL 225 (255)
T ss_pred eeccCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC-------------CeEEeccHHHHHHHHHHHHHH
Confidence 3456788999999996521 25678999999999999876533 688999999999999999999
Q ss_pred HHhhCC----CCCHHHHHHHHHhcCCCCC
Q 036163 165 VKSFHP----DWSPSAIKSAIMTTARPMN 189 (361)
Q Consensus 165 l~~~~p----~~s~~~ik~~L~~tA~~~~ 189 (361)
|++++| .++|.+||++|+++|+++.
T Consensus 226 l~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 226 LLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred HHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999998 7899999999999998875
No 8
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.71 E-value=1.5e-17 Score=165.09 Aligned_cols=83 Identities=30% Similarity=0.362 Sum_probs=71.6
Q ss_pred CCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHh----h
Q 036163 93 APVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKS----F 168 (361)
Q Consensus 93 ~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~ 168 (361)
.+.++.||||||.. ++.+||||+|||++|.+.-... ...|..++|||||||||||++|||++ .
T Consensus 326 ~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~ 392 (412)
T cd04857 326 PGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAE 392 (412)
T ss_pred CCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhc
Confidence 45689999999988 8999999999999998752211 23689999999999999999999975 4
Q ss_pred CCCCCHHHHHHHHHhcCCCC
Q 036163 169 HPDWSPSAIKSAIMTTARPM 188 (361)
Q Consensus 169 ~p~~s~~~ik~~L~~tA~~~ 188 (361)
+|.|+|.+||++|++||+++
T Consensus 393 ~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 393 GIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCCCHHHHHHHHHHhCccC
Confidence 78999999999999999864
No 9
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.71 E-value=2e-17 Score=154.09 Aligned_cols=90 Identities=27% Similarity=0.414 Sum_probs=78.1
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF 168 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 168 (361)
..+..+.++.||++|+.. ||.|||++|+++.+.. .|..++|||||||||||++|||+|+
T Consensus 150 a~~~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~ 208 (239)
T cd05561 150 AVDARGRLYREANRGAHV--------DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTAALALLLQA 208 (239)
T ss_pred eecCCCCccccCCCCCcc--------eEEccccceecccCCC-------------CEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 355677899999999876 9999999999876543 7999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 036163 169 HPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSG 203 (361)
Q Consensus 169 ~p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~G~G 203 (361)
+| ++++||+++|++||+.+.... ....+|||
T Consensus 209 ~p-~~~~~i~~~L~~ta~~~g~~~---~d~~~G~G 239 (239)
T cd05561 209 SP-LAPDDARARLAATAKDLGPPG---RDPVFGYG 239 (239)
T ss_pred CC-CCHHHHHHHHHHHhhccCCCC---cCCCcCCC
Confidence 99 999999999999998776543 34588887
No 10
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.71 E-value=8e-18 Score=173.00 Aligned_cols=89 Identities=28% Similarity=0.400 Sum_probs=75.7
Q ss_pred CCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCC
Q 036163 113 KPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSK 192 (361)
Q Consensus 113 KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~~ 192 (361)
++||+|||++|+++++.+ .|..++|||||||||||+||||++++|.|+++||+++|++||.++....
T Consensus 531 ~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~ 597 (639)
T PTZ00262 531 YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK 597 (639)
T ss_pred cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC
Confidence 459999999999998754 7999999999999999999999999999999999999999998875432
Q ss_pred CCCCCCCCCcccccccccCCCCcccc
Q 036163 193 NKDAEFAFGSGHINPVEAVNPGLVYE 218 (361)
Q Consensus 193 ~~~~~~~~G~G~vn~~~A~~~~lv~d 218 (361)
+...+.|+||+.+|++..+-+-
T Consensus 598 ----n~~~wgG~LDa~kAV~~Ai~~~ 619 (639)
T PTZ00262 598 ----NKVKWGGYLDIHHAVNLAIASK 619 (639)
T ss_pred ----CccccCcEEcHHHHHHHHHhcc
Confidence 1122348999999999766543
No 11
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.70 E-value=3.5e-17 Score=154.08 Aligned_cols=83 Identities=36% Similarity=0.529 Sum_probs=74.3
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF 168 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 168 (361)
..+..+.++.||++||.. ++.+|||++|||.++++.... +.|..++|||||||||||++|||+++
T Consensus 179 a~~~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~ 243 (261)
T cd07493 179 AVDANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQA 243 (261)
T ss_pred EeccCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHH
Confidence 345667899999999987 789999999999999975433 37899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCC
Q 036163 169 HPDWSPSAIKSAIMTTAR 186 (361)
Q Consensus 169 ~p~~s~~~ik~~L~~tA~ 186 (361)
+|.|++.|||++|++||+
T Consensus 244 ~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 244 HPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 999999999999999984
No 12
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.69 E-value=3e-17 Score=156.96 Aligned_cols=87 Identities=25% Similarity=0.331 Sum_probs=69.9
Q ss_pred ccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCC-----CCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCC
Q 036163 98 GFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVP-----IGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDW 172 (361)
Q Consensus 98 ~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~ 172 (361)
.||+|||.. ++.+||||+|||++|.+........ ...........|..++|||||||||||++|||++++|++
T Consensus 200 ~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~ 277 (291)
T cd04847 200 ATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPEL 277 (291)
T ss_pred CccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCC
Confidence 399999987 8999999999999998764421100 000011224579999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCC
Q 036163 173 SPSAIKSAIMTTAR 186 (361)
Q Consensus 173 s~~~ik~~L~~tA~ 186 (361)
+|++||++|+++|+
T Consensus 278 t~~~ikalL~~sA~ 291 (291)
T cd04847 278 SPETIRALLIHSAE 291 (291)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999999984
No 13
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.69 E-value=9.1e-18 Score=158.69 Aligned_cols=111 Identities=34% Similarity=0.514 Sum_probs=90.8
Q ss_pred CCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCC
Q 036163 91 SDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHP 170 (361)
Q Consensus 91 ~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p 170 (361)
...+.++.||++|+.. ..+.+|||++|||.++++.++... ...|...+|||||||+|||++||+++++|
T Consensus 172 ~~~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~~p 240 (282)
T PF00082_consen 172 DNNGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFAAPVVAGAAALLLSKYP 240 (282)
T ss_dssp ETTSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHHHHHHHHHHHHHHHHST
T ss_pred cccccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCchHHHHHHHHHHHHHHCC
Confidence 3445779999997543 278999999999999988876541 13688999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccccCC
Q 036163 171 DWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVN 212 (361)
Q Consensus 171 ~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~G~G~vn~~~A~~ 212 (361)
.|++.+||.+|+++|.++...........+|+|+||+.+|++
T Consensus 241 ~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 241 NLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp TSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred CCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 999999999999999988732211245678999999999874
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.68 E-value=6.6e-17 Score=152.50 Aligned_cols=85 Identities=46% Similarity=0.585 Sum_probs=77.1
Q ss_pred eeeCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHH
Q 036163 87 AITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVK 166 (361)
Q Consensus 87 ~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 166 (361)
+......+.++.||++||.. .+.+||||+|||.+|.++++.+ .|..++|||||||+|||++|||+
T Consensus 178 Vga~~~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~ 242 (264)
T cd07481 178 VGATDRNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLW 242 (264)
T ss_pred EEecCCCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHH
Confidence 33456778899999999987 6889999999999999988754 78999999999999999999999
Q ss_pred hhCCC--CCHHHHHHHHHhcCC
Q 036163 167 SFHPD--WSPSAIKSAIMTTAR 186 (361)
Q Consensus 167 ~~~p~--~s~~~ik~~L~~tA~ 186 (361)
|++|. ++++|||++|++||+
T Consensus 243 ~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 243 SANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred HhCCCCCCCHHHHHHHHHHhcC
Confidence 99999 999999999999984
No 15
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.63 E-value=8e-16 Score=144.26 Aligned_cols=85 Identities=39% Similarity=0.566 Sum_probs=73.4
Q ss_pred eeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCCHH
Q 036163 96 VAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPS 175 (361)
Q Consensus 96 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~ 175 (361)
++.||++||.. .+.+||||+|||++|++..+..... .....+.|..++|||||||+|||++|||++++|.+++.
T Consensus 180 ~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~ 253 (264)
T cd07487 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPD 253 (264)
T ss_pred ccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHH
Confidence 89999999987 7899999999999999986543111 11224578999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 036163 176 AIKSAIMTTAR 186 (361)
Q Consensus 176 ~ik~~L~~tA~ 186 (361)
+||++|++||+
T Consensus 254 ~ik~~L~~tA~ 264 (264)
T cd07487 254 EVKCILRDTAT 264 (264)
T ss_pred HHHHHHHhhcC
Confidence 99999999984
No 16
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.62 E-value=7.9e-16 Score=145.77 Aligned_cols=85 Identities=33% Similarity=0.371 Sum_probs=74.8
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF 168 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 168 (361)
..+..+..+.||+||+.. .||||+|||.+|+++.+.+ .|..++|||||||||||++|||+|+
T Consensus 167 a~~~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~ 228 (267)
T cd07476 167 AMDDDGLPLKFSNWGADY-----RKKGILAPGENILGAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSL 228 (267)
T ss_pred eecCCCCeeeecCCCCCC-----CCceEEecCCCceeecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHh
Confidence 345667889999999864 3889999999999987654 7899999999999999999999999
Q ss_pred CCC----CCHHHHHHHHHhcCCCCCCC
Q 036163 169 HPD----WSPSAIKSAIMTTARPMNSS 191 (361)
Q Consensus 169 ~p~----~s~~~ik~~L~~tA~~~~~~ 191 (361)
+|. ++|++||++|++||.++...
T Consensus 229 ~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 229 QLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred hhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 886 89999999999999998654
No 17
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.62 E-value=1.9e-15 Score=144.89 Aligned_cols=72 Identities=36% Similarity=0.544 Sum_probs=65.8
Q ss_pred eeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCCH
Q 036163 95 VVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSP 174 (361)
Q Consensus 95 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~ 174 (361)
.++.||++|+. ++||+|||++|+++.+.. .|..++|||||||||||++|||+|++|.|++
T Consensus 220 ~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~ 279 (291)
T cd07483 220 LVANFSNYGKK-------NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTA 279 (291)
T ss_pred cccccCCCCCC-------ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 58999999974 359999999999987653 7999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 036163 175 SAIKSAIMTTAR 186 (361)
Q Consensus 175 ~~ik~~L~~tA~ 186 (361)
.|||++|++||.
T Consensus 280 ~~v~~~L~~ta~ 291 (291)
T cd07483 280 KEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHHhCC
Confidence 999999999983
No 18
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.57 E-value=5.6e-15 Score=140.68 Aligned_cols=81 Identities=22% Similarity=0.179 Sum_probs=64.5
Q ss_pred eeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHh----h-C
Q 036163 95 VVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKS----F-H 169 (361)
Q Consensus 95 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~ 169 (361)
..+.|||||+.. ||.|||++|+++.+...... .......|..++|||||||||||++|||++ + +
T Consensus 192 ~~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~ 260 (277)
T cd04843 192 TRLAFSNYGSRV--------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGG 260 (277)
T ss_pred ccccccCCCCcc--------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCC
Confidence 389999999977 99999999999987542110 011112346899999999999999999975 3 4
Q ss_pred CCCCHHHHHHHHHhcCC
Q 036163 170 PDWSPSAIKSAIMTTAR 186 (361)
Q Consensus 170 p~~s~~~ik~~L~~tA~ 186 (361)
|.|+++|||++|+.|+.
T Consensus 261 p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 261 TPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 99999999999999873
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.56 E-value=7.7e-15 Score=137.51 Aligned_cols=80 Identities=44% Similarity=0.640 Sum_probs=71.4
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF 168 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 168 (361)
..+..+..+.||++||.. |+.|||.+|.++.... ...|..++|||||||+|||++|||+++
T Consensus 176 a~~~~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All~~~ 236 (255)
T cd04077 176 ATDSDDARASFSNYGSCV--------DIFAPGVDILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYLLSL 236 (255)
T ss_pred ccCCCCCccCcccCCCCC--------cEEeCCCCeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHHHhh
Confidence 355667899999999987 9999999999887642 247899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCC
Q 036163 169 HPDWSPSAIKSAIMTTARP 187 (361)
Q Consensus 169 ~p~~s~~~ik~~L~~tA~~ 187 (361)
+|.++++|||++|++||++
T Consensus 237 ~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 237 GPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CCCCCHHHHHHHHHhhccC
Confidence 9999999999999999964
No 20
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.56 E-value=9.6e-15 Score=139.23 Aligned_cols=85 Identities=42% Similarity=0.590 Sum_probs=70.7
Q ss_pred eeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhC-----C
Q 036163 96 VAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFH-----P 170 (361)
Q Consensus 96 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p 170 (361)
++.||++||.. .+.+||||+|||++|+++..... .........|..++|||||||+|||++|||+|++ |
T Consensus 201 ~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~ 274 (293)
T cd04842 201 VASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYP 274 (293)
T ss_pred cccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 99999999987 78999999999999999875420 0011223578999999999999999999999985 4
Q ss_pred ---CCCHHHHHHHHHhcCC
Q 036163 171 ---DWSPSAIKSAIMTTAR 186 (361)
Q Consensus 171 ---~~s~~~ik~~L~~tA~ 186 (361)
.+++.++|++|++||+
T Consensus 275 ~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 275 TKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCcCcCHHHHHHHHHhcCC
Confidence 6677899999999985
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.54 E-value=1.3e-14 Score=135.73 Aligned_cols=87 Identities=45% Similarity=0.585 Sum_probs=71.6
Q ss_pred CCCCCeeeccCCCC----------CCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHH
Q 036163 90 DSDAPVVAGFSSRG----------PNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVA 159 (361)
Q Consensus 90 ~~~~~~~a~fSs~G----------p~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 159 (361)
.+..+..+.||++| |.. .....|||+.|||.+|+++.... ...+.|..++|||||||+||
T Consensus 158 ~~~~~~~~~~s~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~va 227 (254)
T cd07490 158 VDRDDEDAWFSSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVA 227 (254)
T ss_pred ccccCCccCccCCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHH
Confidence 45667788899877 222 24568999999999999865221 12357999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 036163 160 GVAAYVKSFHPDWSPSAIKSAIMTTAR 186 (361)
Q Consensus 160 G~aALl~~~~p~~s~~~ik~~L~~tA~ 186 (361)
|++|||++++|+++++|||++|++||+
T Consensus 228 G~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 228 GVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999984
No 22
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.51 E-value=2.3e-14 Score=133.06 Aligned_cols=84 Identities=30% Similarity=0.396 Sum_probs=69.1
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF 168 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 168 (361)
..+..+..++||+||+.. |+.|||+++.......... .+...+.|..++|||||||+|||++|||+|+
T Consensus 159 a~~~~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~ 226 (242)
T cd07498 159 ATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVAALILSA 226 (242)
T ss_pred EeCCCCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHh
Confidence 355677899999999987 9999999998875432110 1122357889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhc
Q 036163 169 HPDWSPSAIKSAIMTT 184 (361)
Q Consensus 169 ~p~~s~~~ik~~L~~t 184 (361)
+|+|+++|||++|++|
T Consensus 227 ~p~l~~~~i~~~L~~t 242 (242)
T cd07498 227 NPNLTPAEVEDILTST 242 (242)
T ss_pred CCCCCHHHHHHHHHhC
Confidence 9999999999999875
No 23
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.51 E-value=2.3e-14 Score=138.12 Aligned_cols=72 Identities=68% Similarity=1.017 Sum_probs=61.4
Q ss_pred CCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 036163 112 LKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTAR 186 (361)
Q Consensus 112 ~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 186 (361)
.||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++|.|+|.|||++|++||+
T Consensus 236 ~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 799999999999999875311 111233468999999999999999999999999999999999999999984
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.50 E-value=4.8e-14 Score=134.49 Aligned_cols=89 Identities=38% Similarity=0.503 Sum_probs=71.5
Q ss_pred eeCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCC--CCCCCCccceeeeeCCccccHHHHHHHHHHH
Q 036163 88 ITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPI--GDPLFKRQLTYSILSGTSMSCPHVAGVAAYV 165 (361)
Q Consensus 88 ~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 165 (361)
......+.+++||++|+.. |++|||++|.++........ ..........|..++|||||||+|||++|||
T Consensus 195 ga~~~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv 266 (285)
T cd07496 195 GATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALM 266 (285)
T ss_pred eccCCCCCcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHH
Confidence 3456778899999999977 99999999998866432110 0011222457899999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHhc
Q 036163 166 KSFHPDWSPSAIKSAIMTT 184 (361)
Q Consensus 166 ~~~~p~~s~~~ik~~L~~t 184 (361)
+|++|.|++++||++|++|
T Consensus 267 ~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 267 KSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999875
No 25
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.49 E-value=4.3e-14 Score=134.01 Aligned_cols=82 Identities=39% Similarity=0.537 Sum_probs=69.8
Q ss_pred eeCCCCCeeeccCCCCCCCCCCCCCCCcEEecCC-ceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHH
Q 036163 88 ITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGV-DILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVK 166 (361)
Q Consensus 88 ~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~-~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 166 (361)
......+.++.||++|+.. ||+|||+ +|+++++.... .....|..++|||||||+|||++|||+
T Consensus 190 ~a~~~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~ 254 (273)
T cd07485 190 AALDTNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVL 254 (273)
T ss_pred EeccCCCCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHH
Confidence 3455677889999999876 9999999 89888764311 123478999999999999999999999
Q ss_pred hhCCC-CCHHHHHHHHHhc
Q 036163 167 SFHPD-WSPSAIKSAIMTT 184 (361)
Q Consensus 167 ~~~p~-~s~~~ik~~L~~t 184 (361)
|++|. ++++|||++|++|
T Consensus 255 ~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 255 SKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HhCCCCCCHHHHHHHHHhC
Confidence 99999 9999999999986
No 26
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.49 E-value=1.4e-13 Score=118.52 Aligned_cols=95 Identities=26% Similarity=0.352 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCCcc----cceeeeEEEechhhhhHHHHHhhcCC
Q 036163 6 QGCLDSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGKVS----FVVSFPSVAVSKDNFTSIYSYLKSTK 76 (361)
Q Consensus 6 ~~~~~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~~~----~~~~iP~~~Is~~dG~~L~~~~~~~~ 76 (361)
+.++...+++||||||+| .+|+.+|+++||+|+|+ +|+...... ....||+++|++++|+.|++|+++
T Consensus 38 ~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi-~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~-- 114 (143)
T cd02133 38 PEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVII-YNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES-- 114 (143)
T ss_pred hhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEE-eecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC--
Confidence 556777889999999997 68999999999999999 655443221 224789999999999999999987
Q ss_pred CcceeeeeeeeeeCCCCCeeeccCCCCCC
Q 036163 77 KPEAEILTTEAITDSDAPVVAGFSSRGPN 105 (361)
Q Consensus 77 ~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~ 105 (361)
..++.+ ..+.. ..+++.++.||||||.
T Consensus 115 ~~~i~~-~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 115 SKKLTF-NTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred CCeEEE-Eeccc-cccCCccccccCcCCC
Confidence 334443 33333 4677889999999996
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.49 E-value=5.7e-14 Score=134.83 Aligned_cols=98 Identities=30% Similarity=0.270 Sum_probs=71.8
Q ss_pred CeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCC
Q 036163 94 PVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWS 173 (361)
Q Consensus 94 ~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s 173 (361)
+....|+++.+. ...+|||+|||.+|+++.+.. .|..++|||||||+|||++||++|++|.++
T Consensus 197 ~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~ 259 (297)
T cd07480 197 GRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAG 259 (297)
T ss_pred CCCCCccccCCC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccC
Confidence 334445444432 245889999999999887654 799999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCC--CCCCCCCCCCccccccc
Q 036163 174 PSAIKSAIMTTARPMNSS--KNKDAEFAFGSGHINPV 208 (361)
Q Consensus 174 ~~~ik~~L~~tA~~~~~~--~~~~~~~~~G~G~vn~~ 208 (361)
+.+++.+|+......... ........+|+|++++.
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 260 GRALAALLQARLTAARTTQFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCCChhhcCCceeecC
Confidence 999888887432221110 00114678999998875
No 28
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.47 E-value=5.9e-14 Score=134.22 Aligned_cols=80 Identities=26% Similarity=0.221 Sum_probs=67.6
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCc-------eeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHH
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVD-------ILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGV 161 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~-------I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 161 (361)
.....+.++.||++|+.. ++.|||.+ |+++.... ....|..++|||||||+|||+
T Consensus 211 a~~~~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~ 272 (297)
T cd04059 211 AVTANGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGV 272 (297)
T ss_pred eeCCCCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhH
Confidence 345677889999999987 89999988 66554431 013578899999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcCC
Q 036163 162 AAYVKSFHPDWSPSAIKSAIMTTAR 186 (361)
Q Consensus 162 aALl~~~~p~~s~~~ik~~L~~tA~ 186 (361)
+|||+|+||+|++.|||++|++||+
T Consensus 273 aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 273 IALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred HHHhhccCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999984
No 29
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.47 E-value=7.7e-14 Score=131.04 Aligned_cols=78 Identities=41% Similarity=0.531 Sum_probs=70.2
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF 168 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 168 (361)
+....+..+.||++|+.. |++|||++|+++.+.. .|..++|||||||+|||++||++++
T Consensus 182 a~~~~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~ 240 (260)
T cd07484 182 ATDQDDKRASFSNYGKWV--------DVSAPGGGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQ 240 (260)
T ss_pred eeCCCCCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhc
Confidence 345667889999999876 9999999999886643 7899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCC
Q 036163 169 HPDWSPSAIKSAIMTTARPM 188 (361)
Q Consensus 169 ~p~~s~~~ik~~L~~tA~~~ 188 (361)
+| +++++||++|+++|+++
T Consensus 241 ~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 241 GP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CC-CCHHHHHHHHHHhCccC
Confidence 99 99999999999999875
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.47 E-value=8.6e-14 Score=127.89 Aligned_cols=76 Identities=43% Similarity=0.638 Sum_probs=68.2
Q ss_pred eeCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHh
Q 036163 88 ITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKS 167 (361)
Q Consensus 88 ~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~ 167 (361)
......+..+.||++|+.. |+.|||++|+++++.. .|..++|||||||+|||++|||+|
T Consensus 154 ga~~~~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~All~~ 212 (229)
T cd07477 154 GAVDSNNNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTSMATPHVAGVAALVWS 212 (229)
T ss_pred EeecCCCCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------------CEEEEccHHHHHHHHHHHHHHHHH
Confidence 3445677889999999865 9999999999987654 688999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhc
Q 036163 168 FHPDWSPSAIKSAIMTT 184 (361)
Q Consensus 168 ~~p~~s~~~ik~~L~~t 184 (361)
++|.+++.+||++|++|
T Consensus 213 ~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 213 KRPELTNAQVRQALNKT 229 (229)
T ss_pred hCCCCCHHHHHHHHHhC
Confidence 99999999999999875
No 31
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.47 E-value=1e-13 Score=129.92 Aligned_cols=78 Identities=41% Similarity=0.644 Sum_probs=69.1
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF 168 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 168 (361)
.....+..+.||++||. +||+.|||.++++..+. +.|..++|||||||+|||++||++|+
T Consensus 182 a~~~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~ 241 (259)
T cd07473 182 ATDSNDALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGYGYMSGTSMATPHVAGAAALLLSL 241 (259)
T ss_pred ecCCCCCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHh
Confidence 35566788899999985 35999999999986554 37899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCC
Q 036163 169 HPDWSPSAIKSAIMTTAR 186 (361)
Q Consensus 169 ~p~~s~~~ik~~L~~tA~ 186 (361)
+|.+++++||++|++||+
T Consensus 242 ~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 242 NPNLTAAQIKDAILSSAD 259 (259)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999999984
No 32
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.44 E-value=2.2e-13 Score=131.03 Aligned_cols=78 Identities=29% Similarity=0.439 Sum_probs=62.3
Q ss_pred CCCCCCcEE----------------ecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCC
Q 036163 109 PDILKPDIS----------------APGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDW 172 (361)
Q Consensus 109 ~~~~KPdi~----------------APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~ 172 (361)
++..|||++ |||.+|.+...... . .......|..++|||||||||||++|||+|++|.|
T Consensus 195 ~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~--~---~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~ 269 (298)
T cd07494 195 PGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP--D---GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGL 269 (298)
T ss_pred CCCccCccccccCcCCcccccccccCCCcceeccccCCC--C---CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCC
Confidence 577899984 68998875543210 0 01123579999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCCCC
Q 036163 173 SPSAIKSAIMTTARPMNSS 191 (361)
Q Consensus 173 s~~~ik~~L~~tA~~~~~~ 191 (361)
+++|||++|+++|+++...
T Consensus 270 ~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 270 SPERARSLLNKTARDVTKG 288 (298)
T ss_pred CHHHHHHHHHHhCcccCCC
Confidence 9999999999999987653
No 33
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.44 E-value=1.1e-13 Score=129.76 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=56.6
Q ss_pred eeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCCHH
Q 036163 96 VAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPS 175 (361)
Q Consensus 96 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~ 175 (361)
.+.||++|-.....+..||||+|||++|++ +. +.|..++|||||||||||++|||++++|.+.+.
T Consensus 167 ~s~~sn~~~~~~~~~~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~ 231 (247)
T cd07488 167 ASDVSNAGSEINSYGRRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKK 231 (247)
T ss_pred ecccccccCCCCCCCCceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhC
Confidence 456677543322367889999999999998 22 268899999999999999999999998876644
Q ss_pred ------HHHHHHHhc
Q 036163 176 ------AIKSAIMTT 184 (361)
Q Consensus 176 ------~ik~~L~~t 184 (361)
+++.+|+.+
T Consensus 232 ~~~~~~~~~~~~~~~ 246 (247)
T cd07488 232 GNNNLIALRALVSSS 246 (247)
T ss_pred cchhHHHHHHHHhcc
Confidence 456666554
No 34
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.2e-13 Score=138.57 Aligned_cols=101 Identities=30% Similarity=0.351 Sum_probs=84.8
Q ss_pred eeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh----CC
Q 036163 95 VVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF----HP 170 (361)
Q Consensus 95 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p 170 (361)
..-.||||||.. |+.+--.|.|||+-|-+.-.-. ...-..|.|||||+|+++|.+|||++. +-
T Consensus 453 ~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~t-----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni 519 (1304)
T KOG1114|consen 453 NPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYT-----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNI 519 (1304)
T ss_pred CccccccCCCCc--CCCcceEEecCCccccCCchhh-----------hhhhhhhCCcccCCccccchHHHHHHHHHhcCC
Confidence 466799999998 7888889999999986542111 124568999999999999999998764 56
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccccCC
Q 036163 171 DWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVN 212 (361)
Q Consensus 171 ~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~G~G~vn~~~A~~ 212 (361)
.|+|..||.+|++||.++.+. ..|.+|.|+++..+|.+
T Consensus 520 ~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 520 PYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred CCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 899999999999999998876 57999999999999876
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.39 E-value=4.6e-13 Score=122.95 Aligned_cols=62 Identities=34% Similarity=0.474 Sum_probs=57.2
Q ss_pred CCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 036163 112 LKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTAR 186 (361)
Q Consensus 112 ~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~ 186 (361)
.++++.|||.+|+++++.. .|..++|||||||+|||++|||++++|.|+++|||++|+.||+
T Consensus 161 ~~~~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 161 IYVEFSADGVDIIAPAPHG-------------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred CCceEEeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 4569999999999987653 7899999999999999999999999999999999999999984
No 36
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.38 E-value=7.4e-13 Score=126.17 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=67.6
Q ss_pred eeCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCC--C-CCC------CCCCCccceeeeeCCccccHHHH
Q 036163 88 ITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFG--V-PIG------DPLFKRQLTYSILSGTSMSCPHV 158 (361)
Q Consensus 88 ~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~--~-~~~------~~~~~~~~~y~~~sGTSmAaP~V 158 (361)
...+..+.++.||++|+.. +|++|||+++........ . ... .......+.|..++|||||||+|
T Consensus 195 ga~~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~V 267 (294)
T cd07482 195 SATDNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKV 267 (294)
T ss_pred EeeCCCCCcCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHH
Confidence 3456678889999999754 499999999853221110 0 000 00113346799999999999999
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 036163 159 AGVAAYVKSFHPDWSP-SAIKSAIMTT 184 (361)
Q Consensus 159 AG~aALl~~~~p~~s~-~~ik~~L~~t 184 (361)
||++|||+|++|.+++ .|||++|++|
T Consensus 268 aG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 268 SGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 9999999999999999 9999999986
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.37 E-value=7e-13 Score=123.89 Aligned_cols=82 Identities=27% Similarity=0.354 Sum_probs=68.4
Q ss_pred eCCCCCeeecc--CCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHH
Q 036163 89 TDSDAPVVAGF--SSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVK 166 (361)
Q Consensus 89 ~~~~~~~~a~f--Ss~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 166 (361)
..+..+....| |++|+.. -..+++|||.+|+++.+.. ...|..++|||||||+|||++|||+
T Consensus 184 a~~~~~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~ 247 (267)
T cd04848 184 AVDPNGTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLA 247 (267)
T ss_pred EecCCCCcccccccccchhh-----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHH
Confidence 34555667777 9998754 2447999999999887631 2378899999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhcCC
Q 036163 167 SFHPDWSPSAIKSAIMTTAR 186 (361)
Q Consensus 167 ~~~p~~s~~~ik~~L~~tA~ 186 (361)
|++|.++++|||++|++||+
T Consensus 248 ~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 248 QKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999984
No 38
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.1e-12 Score=124.04 Aligned_cols=82 Identities=40% Similarity=0.530 Sum_probs=68.7
Q ss_pred eeeeCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHH
Q 036163 86 EAITDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV 165 (361)
Q Consensus 86 ~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 165 (361)
++...+-.+.+|.|||||+.+ ||-|||++|+|+|.+. ...-.++||||||+|||||++|..
T Consensus 371 TVGAst~~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs-----------~~at~ilSGTSMasPhvaG~aAy~ 431 (501)
T KOG1153|consen 371 TVGASTKNDTIAFFSNWGKCV--------DIFAPGVNILSSWIGS-----------NNATAILSGTSMASPHVAGLAAYF 431 (501)
T ss_pred EecccccccchhhhcCcccee--------eeecCchhhhhhhhcC-----------ccchheeecccccCcchhhhHHHh
Confidence 344456678999999999999 9999999999999876 235678999999999999999999
Q ss_pred HhhCCC---------CCHHHHHHHHHhcCC
Q 036163 166 KSFHPD---------WSPSAIKSAIMTTAR 186 (361)
Q Consensus 166 ~~~~p~---------~s~~~ik~~L~~tA~ 186 (361)
++++|. .++.++|..+..-..
T Consensus 432 ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 432 LSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999873 378888887776553
No 39
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1e-11 Score=124.83 Aligned_cols=106 Identities=28% Similarity=0.385 Sum_probs=88.5
Q ss_pred CCCCCeeeccCCCCCCCC----CCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHH
Q 036163 90 DSDAPVVAGFSSRGPNEI----APDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYV 165 (361)
Q Consensus 90 ~~~~~~~a~fSs~Gp~~~----~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 165 (361)
.+-++.+|.|||||-+.. ..+++||||++.|.+|...... .+-..+||||.|+|.|||+++|+
T Consensus 352 IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LL 418 (1033)
T KOG4266|consen 352 IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLL 418 (1033)
T ss_pred ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeeeE
Confidence 456788999999997543 3578999999999998765443 36788999999999999999999
Q ss_pred Hh----hCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccccCC
Q 036163 166 KS----FHPDWSPSAIKSAIMTTARPMNSSKNKDAEFAFGSGHINPVEAVN 212 (361)
Q Consensus 166 ~~----~~p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~G~G~vn~~~A~~ 212 (361)
.+ +.--++|+.+|++|+..|..+... .-|.||+|.+|..++.+
T Consensus 419 vS~~~qk~dl~NPASmKQaLiegA~kLpg~----NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 419 VSVEAQKKDLLNPASMKQALIEGAAKLPGP----NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeeheehhhccCHHHHHHHHHhHHhhCCCC----chhhccCcchhHHHHHH
Confidence 76 334579999999999999988765 35799999999998876
No 40
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.19 E-value=5.9e-11 Score=99.37 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCC-c----c---cceeeeEEEechhhhhHH
Q 036163 2 CTGGQGCLDSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGK-V----S---FVVSFPSVAVSKDNFTSI 68 (361)
Q Consensus 2 C~~~~~~~~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~-~----~---~~~~iP~~~Is~~dG~~L 68 (361)
|. +..+...+++||||||+| .+|+.+|+++||+++|+ +|+.... . . ....||+++|++++|+.|
T Consensus 32 C~--~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi-~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 32 CD--ASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIV-VNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred CC--ccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEE-EeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 65 556667789999999998 67999999999999999 5544321 1 1 234699999999999999
Q ss_pred HHHhhcCCCccee
Q 036163 69 YSYLKSTKKPEAE 81 (361)
Q Consensus 69 ~~~~~~~~~~~~~ 81 (361)
+++++++.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999988766554
No 41
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.17 E-value=8.6e-11 Score=98.44 Aligned_cols=78 Identities=32% Similarity=0.533 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCCcEEEEEe------chHHHHHHHcCceEEEEeecCCCCCcc---cceeeeEEEechhhhhHHHHHh
Q 036163 2 CTGGQGCLDSTLAKGKILICQS------SDEFSEVLRSGAGGSVSLNDDKIGKVS---FVVSFPSVAVSKDNFTSIYSYL 72 (361)
Q Consensus 2 C~~~~~~~~~~~v~GKIVL~~r------~~k~~na~~aGA~GVIi~~n~~~~~~~---~~~~iP~~~Is~~dG~~L~~~~ 72 (361)
|+ +..+++.+++||||||+| .+|..+++++||+|+|+ +++...... ....+|+++|+.++|+.|++|+
T Consensus 40 C~--~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~-~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~ 116 (126)
T cd02120 40 CL--PGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMIL-ANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYI 116 (126)
T ss_pred CC--CCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEE-EecCCCCceecccccccceEEECHHHHHHHHHHH
Confidence 77 666777899999999987 37889999999999999 655433222 2367999999999999999999
Q ss_pred hcCCCcceee
Q 036163 73 KSTKKPEAEI 82 (361)
Q Consensus 73 ~~~~~~~~~i 82 (361)
+++.+++++|
T Consensus 117 ~~~~~~~~~i 126 (126)
T cd02120 117 NSTSNPTATI 126 (126)
T ss_pred HcCCCcceeC
Confidence 9987776653
No 42
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.14 E-value=4.1e-11 Score=112.30 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=52.5
Q ss_pred eCCCCCeeeccCCCCCCCCCCCCCCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhh
Q 036163 89 TDSDAPVVAGFSSRGPNEIAPDILKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSF 168 (361)
Q Consensus 89 ~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 168 (361)
..+..+.++.||++|+.. |++|||++|+++.+.. ..+.|..++|||||||||||++||+++.
T Consensus 168 A~~~~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 168 AADEDGGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred eeCCCCCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 355667889999999887 9999999999887521 1247999999999999999999999985
No 43
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.08 E-value=3.9e-10 Score=94.37 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCC-CCCcc------cceeeeEEEechhhhhHHHHHhh
Q 036163 6 QGCLDSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDK-IGKVS------FVVSFPSVAVSKDNFTSIYSYLK 73 (361)
Q Consensus 6 ~~~~~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~-~~~~~------~~~~iP~~~Is~~dG~~L~~~~~ 73 (361)
+..+ +.+++|||||++| .+|+++|+++||+|+|+ +|+. ..... +...||+++|++++|+.|++.++
T Consensus 36 ~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv-~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~ 113 (122)
T cd02130 36 AADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAII-YNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAALA 113 (122)
T ss_pred cccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEE-EECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHHHh
Confidence 3344 3579999999998 78999999999999999 5544 22111 24579999999999999999999
Q ss_pred cCCCccee
Q 036163 74 STKKPEAE 81 (361)
Q Consensus 74 ~~~~~~~~ 81 (361)
++.+.+++
T Consensus 114 ~g~~v~~~ 121 (122)
T cd02130 114 NGGEVSAN 121 (122)
T ss_pred cCCcEEEe
Confidence 99877664
No 44
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.07 E-value=6.2e-10 Score=92.51 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCC--Ccc-----cceeeeEEEechhhhhHHH
Q 036163 2 CTGGQGCLDSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIG--KVS-----FVVSFPSVAVSKDNFTSIY 69 (361)
Q Consensus 2 C~~~~~~~~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~--~~~-----~~~~iP~~~Is~~dG~~L~ 69 (361)
|. +..++ .+++||||||+| .+|+.+|+++||+|+|+ +|+... .+. ....+|+++|++++|+.|+
T Consensus 30 C~--~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi-~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~ 105 (118)
T cd04818 30 CT--AFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIV-ANNVAGGAPITMGGDDPDITIPAVMISQADGDALK 105 (118)
T ss_pred cC--CCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEE-EECCCCCcceeccCCCCCCEEeEEEecHHHHHHHH
Confidence 76 45543 469999999998 58999999999999999 554432 111 2357999999999999999
Q ss_pred HHhhcCCCccee
Q 036163 70 SYLKSTKKPEAE 81 (361)
Q Consensus 70 ~~~~~~~~~~~~ 81 (361)
+|++++.+.+++
T Consensus 106 ~~l~~g~~v~v~ 117 (118)
T cd04818 106 AALAAGGTVTVT 117 (118)
T ss_pred HHHhcCCcEEEe
Confidence 999988766654
No 45
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.06 E-value=3.3e-10 Score=103.05 Aligned_cols=62 Identities=47% Similarity=0.665 Sum_probs=53.5
Q ss_pred CCCcEEecCCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 036163 112 LKPDISAPGVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTT 184 (361)
Q Consensus 112 ~KPdi~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~t 184 (361)
.|||+.|||.++..... .....+..++|||||||+|||++||+++++|.+++.++|++|+++
T Consensus 180 ~~~~~~apg~~~~~~~~-----------~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 180 AGVDIAAPGGDILSSPT-----------TGGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCceEEeCcCCccCccc-----------CCCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 46699999999987511 113478999999999999999999999999999999999999875
No 46
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.05 E-value=1.4e-10 Score=93.04 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCC-CCC------cccceeeeEEEechhhhhHHHHHh
Q 036163 6 QGCLDSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDK-IGK------VSFVVSFPSVAVSKDNFTSIYSYL 72 (361)
Q Consensus 6 ~~~~~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~-~~~------~~~~~~iP~~~Is~~dG~~L~~~~ 72 (361)
+..+...+++||||||+| .+|+.+|+++||+|+|| +|.. ... ......||+++|++++|+.|++|+
T Consensus 24 ~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi-~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVII-YNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp HHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEE-E-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEE-EeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 345678899999999998 79999999999999999 6611 111 114678999999999999999986
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.05 E-value=7e-10 Score=94.88 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCC--Cc----ccceeeeEEEechhhhhHHHHHhhcCCCc
Q 036163 10 DSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIG--KV----SFVVSFPSVAVSKDNFTSIYSYLKSTKKP 78 (361)
Q Consensus 10 ~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~--~~----~~~~~iP~~~Is~~dG~~L~~~~~~~~~~ 78 (361)
++.+++||||||+| .+|+.+|+++||++||+|.|.+.. .+ .....+|+++|+.++|+.|+++++++.++
T Consensus 55 ~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~G~~V 134 (138)
T cd02122 55 IPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEILELLERGISV 134 (138)
T ss_pred CCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHcCCcE
Confidence 45679999999999 799999999999999994444312 11 12347899999999999999999998877
Q ss_pred ceee
Q 036163 79 EAEI 82 (361)
Q Consensus 79 ~~~i 82 (361)
+++|
T Consensus 135 tv~~ 138 (138)
T cd02122 135 TMVI 138 (138)
T ss_pred EEeC
Confidence 6653
No 48
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.05 E-value=7.3e-10 Score=92.32 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=60.8
Q ss_pred CCCCCCC--CCCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCC--Ccc-------cceeeeEEEechhhh
Q 036163 2 CTGGQGC--LDSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIG--KVS-------FVVSFPSVAVSKDNF 65 (361)
Q Consensus 2 C~~~~~~--~~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~--~~~-------~~~~iP~~~Is~~dG 65 (361)
|. ++. +...+++||||||+| .+|+.+|+++||+|+|+ +++... ... ....+|+++|+.++|
T Consensus 33 C~--~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii-~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 33 CG--YGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVII-YNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred Ee--cCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEE-EECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 65 444 677889999999987 58999999999999999 554432 111 235799999999999
Q ss_pred hHHHHHhhcCCCccee
Q 036163 66 TSIYSYLKSTKKPEAE 81 (361)
Q Consensus 66 ~~L~~~~~~~~~~~~~ 81 (361)
+.|++|+.++.+.++.
T Consensus 110 ~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 110 EALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHhcCCceEEe
Confidence 9999999987765543
No 49
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.99 E-value=2e-09 Score=89.65 Aligned_cols=72 Identities=18% Similarity=0.101 Sum_probs=58.1
Q ss_pred CCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCC---c-------ccceeeeEEEechhhhhHHHHHhhcC
Q 036163 11 STLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGK---V-------SFVVSFPSVAVSKDNFTSIYSYLKST 75 (361)
Q Consensus 11 ~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~---~-------~~~~~iP~~~Is~~dG~~L~~~~~~~ 75 (361)
..+++|||+|++| .+|+.+|+++||+++|+|.++.... + .....||+++|++++|+.|++.+.++
T Consensus 30 ~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g 109 (118)
T cd02127 30 IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTLERL 109 (118)
T ss_pred ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHHHHcC
Confidence 5679999999999 7999999999999999954433211 1 12357999999999999999999998
Q ss_pred CCcceee
Q 036163 76 KKPEAEI 82 (361)
Q Consensus 76 ~~~~~~i 82 (361)
..+++.|
T Consensus 110 ~~~~~~~ 116 (118)
T cd02127 110 GLPYAII 116 (118)
T ss_pred CceEEee
Confidence 8776544
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.97 E-value=1.7e-09 Score=89.95 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCC----Cc---ccceeeeEEEechhhhhHHH
Q 036163 2 CTGGQGCLDSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIG----KV---SFVVSFPSVAVSKDNFTSIY 69 (361)
Q Consensus 2 C~~~~~~~~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~----~~---~~~~~iP~~~Is~~dG~~L~ 69 (361)
|. +.++.+.+++|||+|++| .+|+.+|+++||+|||| +|+... +. .....||+++|++++|+.|+
T Consensus 33 C~--~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII-~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 33 CS--ASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLI-VSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred CC--ccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEE-EECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 76 666667789999999999 79999999999999999 554432 11 13457899999999999999
Q ss_pred HHhhcC
Q 036163 70 SYLKST 75 (361)
Q Consensus 70 ~~~~~~ 75 (361)
+.+.+.
T Consensus 110 ~~l~~~ 115 (120)
T cd02129 110 QTFGDS 115 (120)
T ss_pred HHhccC
Confidence 998743
No 51
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.96 E-value=2.5e-09 Score=91.36 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCCCCCCCCcEEEEEe----------chHHHHHHHcCceEEEEeecCC--CCCc----c---cceeeeEEEechhhhhHH
Q 036163 8 CLDSTLAKGKILICQS----------SDEFSEVLRSGAGGSVSLNDDK--IGKV----S---FVVSFPSVAVSKDNFTSI 68 (361)
Q Consensus 8 ~~~~~~v~GKIVL~~r----------~~k~~na~~aGA~GVIi~~n~~--~~~~----~---~~~~iP~~~Is~~dG~~L 68 (361)
++.+.+++|||+|++| .+|+++|+++||+|+|| ||+. +..+ . ....||+++|++++|++|
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avII-yNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L 127 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIV-YSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQAL 127 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEE-EeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHH
Confidence 5667789999999998 37899999999999999 5554 2211 1 145899999999999999
Q ss_pred HHHhhcC
Q 036163 69 YSYLKST 75 (361)
Q Consensus 69 ~~~~~~~ 75 (361)
++.+.+.
T Consensus 128 ~~~l~~~ 134 (139)
T cd04817 128 LAALGQS 134 (139)
T ss_pred HHHhcCC
Confidence 9998654
No 52
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.96 E-value=2.5e-09 Score=90.12 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=57.0
Q ss_pred CCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCC-----Cc------c---cceeeeEEEechhhhhHHHH
Q 036163 10 DSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIG-----KV------S---FVVSFPSVAVSKDNFTSIYS 70 (361)
Q Consensus 10 ~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~-----~~------~---~~~~iP~~~Is~~dG~~L~~ 70 (361)
++.+++|||+|++| .+|+.+|+++||+++|+|.|.... .. . +...||+++|+++||+.|++
T Consensus 35 ~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~ 114 (126)
T cd02126 35 NAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLA 114 (126)
T ss_pred CccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHH
Confidence 35679999999999 799999999999999994433321 11 0 24589999999999999999
Q ss_pred HhhcCCCccee
Q 036163 71 YLKSTKKPEAE 81 (361)
Q Consensus 71 ~~~~~~~~~~~ 81 (361)
+++.+...++.
T Consensus 115 ~l~~~~~~~~~ 125 (126)
T cd02126 115 AIKEHQNVEVL 125 (126)
T ss_pred HHHhCCceEEe
Confidence 99988765543
No 53
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.94 E-value=2.9e-09 Score=91.22 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=56.0
Q ss_pred CCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCCcc---------cceeeeEEEechhhhhHHHHHhhcCCC
Q 036163 12 TLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGKVS---------FVVSFPSVAVSKDNFTSIYSYLKSTKK 77 (361)
Q Consensus 12 ~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~~~---------~~~~iP~~~Is~~dG~~L~~~~~~~~~ 77 (361)
.+++||||||+| .+|+.||+++||+++|+ +|+...... ....||+++|++++|+.|++++.++..
T Consensus 56 ~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv-~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~ 134 (139)
T cd02132 56 SKLSGSIALVERGECAFTEKAKIAEAGGASALLI-INDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKK 134 (139)
T ss_pred cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEE-EECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCc
Confidence 479999999999 79999999999999999 544332111 135899999999999999999998876
Q ss_pred ccee
Q 036163 78 PEAE 81 (361)
Q Consensus 78 ~~~~ 81 (361)
++++
T Consensus 135 Vtv~ 138 (139)
T cd02132 135 VEVL 138 (139)
T ss_pred EEEe
Confidence 5543
No 54
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.90 E-value=6e-09 Score=87.91 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=55.3
Q ss_pred CCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCC-c-------------ccceeeeEEEechhhhhHHHHHhh
Q 036163 13 LAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGK-V-------------SFVVSFPSVAVSKDNFTSIYSYLK 73 (361)
Q Consensus 13 ~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~-~-------------~~~~~iP~~~Is~~dG~~L~~~~~ 73 (361)
...+||||++| .+|+.+|+++||+++|+ +|+.... . .....||+++|+.++|+.|++.+.
T Consensus 40 ~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII-~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~ 118 (127)
T cd02125 40 GRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLV-ADNVDEPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAIS 118 (127)
T ss_pred CCCceEEEEECCCcCHHHHHHHHHHCCCcEEEE-EECCCCccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHh
Confidence 37899999999 79999999999999999 5543321 1 123469999999999999999999
Q ss_pred cCCCccee
Q 036163 74 STKKPEAE 81 (361)
Q Consensus 74 ~~~~~~~~ 81 (361)
++..++++
T Consensus 119 ~g~~V~v~ 126 (127)
T cd02125 119 NGEMVVIK 126 (127)
T ss_pred cCCeEEEe
Confidence 98876654
No 55
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.90 E-value=5.5e-09 Score=86.90 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCCc--------ccceeeeEEEechhhhhHHHHHhhcC
Q 036163 9 LDSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGKV--------SFVVSFPSVAVSKDNFTSIYSYLKST 75 (361)
Q Consensus 9 ~~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~~--------~~~~~iP~~~Is~~dG~~L~~~~~~~ 75 (361)
++..+++|||||++| .+|+.+|+++||+++|+|.|...... .....||+++|++++|++|++++...
T Consensus 33 ~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~~ 112 (117)
T cd04813 33 QEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPKS 112 (117)
T ss_pred CCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHHhcccc
Confidence 366889999999999 79999999999999999444432211 13458999999999999999987654
No 56
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.89 E-value=6.2e-09 Score=88.07 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=53.3
Q ss_pred CCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCCc----ccceeeeEEEechhhhhHHHHHhhcCCCccee
Q 036163 12 TLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGKV----SFVVSFPSVAVSKDNFTSIYSYLKSTKKPEAE 81 (361)
Q Consensus 12 ~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~~----~~~~~iP~~~Is~~dG~~L~~~~~~~~~~~~~ 81 (361)
.+++|||+|++| .+|+.+|+++||++||| +|+..... .+...+|.+.+ +++|+.|++.++++...+++
T Consensus 52 ~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~avii-yn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~~G~~vtv~ 128 (129)
T cd02124 52 PDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLI-YNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDALAAGSNVTVD 128 (129)
T ss_pred ccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEE-EECCCCcccccCCCCcceeeEEe-HHHHHHHHHHHhcCCeEEEe
Confidence 479999999999 79999999999999999 55443322 13334666666 99999999999988766554
No 57
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.72 E-value=4.8e-08 Score=85.08 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCCc-c--------cceeeeEEEechhhhhHHHHHhhcCCC
Q 036163 12 TLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGKV-S--------FVVSFPSVAVSKDNFTSIYSYLKSTKK 77 (361)
Q Consensus 12 ~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~~-~--------~~~~iP~~~Is~~dG~~L~~~~~~~~~ 77 (361)
.++.|||||++| .+|+.+|+++||+++|+ +|+..... . ....||+++|+.++|+.|++++...+.
T Consensus 64 ~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII-~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 64 NASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIV-YNDESNDLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred ccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEE-EECCCCcceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 789999999999 79999999999999999 55443221 1 145899999999999999999988764
No 58
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.71 E-value=1.3e-07 Score=77.94 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=58.2
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEec-----C---Cc----------e-EEEEEcCeEEEeeCCcEEEEEEEEEeecc---
Q 036163 275 FTINFSRTVTNVGLANTTYKAKILQ-----N---SK----------I-GVKVVPQALTFKSLNEKKSFRVTVTGRGL--- 332 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~v~~-----~---~g----------~-~v~v~p~~~~~~~~g~~~~~~vt~~~~~~--- 332 (361)
...+++.+++|.|+.+.+|++++.. . .| . .+...|.+|++ ++|++++++|+|+++..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 4589999999999999999999882 0 11 1 57778889999 89999999999999652
Q ss_pred CCCCeEEEEEEEEc-CCc-eEEeEEE
Q 036163 333 SNGTIVSTSLIWAD-GNH-NVRSPIV 356 (361)
Q Consensus 333 ~~~~~~~G~l~~~~-~~~-~vr~P~~ 356 (361)
....+++|+|.+++ .++ .+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 33679999999985 454 8999985
No 59
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.70 E-value=4.7e-08 Score=82.44 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCCCCCCCCCcEEEEEe-------chHHHHHHHcCceEEEEeecCCCCCcc----------cceeeeEEEechhhhhHHH
Q 036163 7 GCLDSTLAKGKILICQS-------SDEFSEVLRSGAGGSVSLNDDKIGKVS----------FVVSFPSVAVSKDNFTSIY 69 (361)
Q Consensus 7 ~~~~~~~v~GKIVL~~r-------~~k~~na~~aGA~GVIi~~n~~~~~~~----------~~~~iP~~~Is~~dG~~L~ 69 (361)
.++.+.+++|||||++| .+|+.+|+++||+|+|+ +|+...... ....||++.|+.+||+.|+
T Consensus 36 ~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~-~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~ 114 (127)
T cd04819 36 KDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVV-VNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA 114 (127)
T ss_pred HHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEE-EeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence 45556789999999998 36899999999999999 554433221 1357999999999999999
Q ss_pred HHhhcCC
Q 036163 70 SYLKSTK 76 (361)
Q Consensus 70 ~~~~~~~ 76 (361)
+.++.+.
T Consensus 115 ~~l~~g~ 121 (127)
T cd04819 115 RVAERND 121 (127)
T ss_pred HHHhcCC
Confidence 9998764
No 60
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1e-06 Score=88.53 Aligned_cols=100 Identities=40% Similarity=0.532 Sum_probs=76.0
Q ss_pred CCCeeeccCCCCCCCCCCCCCCCcEEecCCceee-----ccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHH
Q 036163 92 DAPVVAGFSSRGPNEIAPDILKPDISAPGVDILA-----AFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVK 166 (361)
Q Consensus 92 ~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s-----~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 166 (361)
..+.++.||++|+.. ..++.|||.+|.+ .+++. ...|..++||||++||++|++||++
T Consensus 314 ~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~ 376 (508)
T COG1404 314 LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGD-----------GADYVTLSGTSMAAPHVSGVAALVL 376 (508)
T ss_pred CCCccccccccCCCC------CcceeCCCccccccccceeeeCC-----------ccceEeeccccccccHHHHHHHHHH
Confidence 358899999999851 2299999999987 33332 0249999999999999999999999
Q ss_pred hhCC-CCCHHHHHHHHHhcCCC-CCCCCCCCCCCCCCcccccccccCC
Q 036163 167 SFHP-DWSPSAIKSAIMTTARP-MNSSKNKDAEFAFGSGHINPVEAVN 212 (361)
Q Consensus 167 ~~~p-~~s~~~ik~~L~~tA~~-~~~~~~~~~~~~~G~G~vn~~~A~~ 212 (361)
+.+| .+++.+++..+..++.. .... ....++.|..+......
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 377 SANPNELTPAQVRNLIVTTAGLTPLSG----VDNLVGGGLANLDAAAT 420 (508)
T ss_pred ccCcccCCHHHHHHHHhhccccccCCc----cccccccCccccccccc
Confidence 9999 79999999999888874 1111 23456666665555544
No 61
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.20 E-value=3.8e-06 Score=71.55 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=54.2
Q ss_pred CCCCCCCCcEEEEEe-----------chH-------HHHHHHcCceEEEEeecCCC-------CCc-c---cceeeeEEE
Q 036163 9 LDSTLAKGKILICQS-----------SDE-------FSEVLRSGAGGSVSLNDDKI-------GKV-S---FVVSFPSVA 59 (361)
Q Consensus 9 ~~~~~v~GKIVL~~r-----------~~k-------~~na~~aGA~GVIi~~n~~~-------~~~-~---~~~~iP~~~ 59 (361)
++..+++|||||++| .+| .+.|+++||.|+|+ +|... .+. . ....||++.
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv-~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLI-RSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEE-EecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 446789999999976 234 58999999999999 55321 111 1 234699999
Q ss_pred echhhhhHHHHHhhcCCCccee
Q 036163 60 VSKDNFTSIYSYLKSTKKPEAE 81 (361)
Q Consensus 60 Is~~dG~~L~~~~~~~~~~~~~ 81 (361)
|+.+||+.|...++.+..+.+.
T Consensus 112 is~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 112 ISVEDADMLERLAARGKPIRVN 133 (134)
T ss_pred echhcHHHHHHHHhCCCCeEEe
Confidence 9999999999999988655443
No 62
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.97 E-value=1.2e-05 Score=71.77 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=49.9
Q ss_pred CCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCC-----------------C------cc------------
Q 036163 11 STLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIG-----------------K------VS------------ 50 (361)
Q Consensus 11 ~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~-----------------~------~~------------ 50 (361)
+.+++||||||+| .+|+++|+++||+|||||.+.... + ++
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4589999999997 789999999999999995442110 0 00
Q ss_pred -cceeeeEEEechhhhhHHHHHhhcC
Q 036163 51 -FVVSFPSVAVSKDNFTSIYSYLKST 75 (361)
Q Consensus 51 -~~~~iP~~~Is~~dG~~L~~~~~~~ 75 (361)
....||+.-|++++++.|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0235899999999999999988643
No 63
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.40 E-value=0.00045 Score=59.94 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=42.8
Q ss_pred CCCCCCCCCCcEEEEEe-----------------------chHHHHHHHcCceEEEEeecCCCCC-c----ccceeeeEE
Q 036163 7 GCLDSTLAKGKILICQS-----------------------SDEFSEVLRSGAGGSVSLNDDKIGK-V----SFVVSFPSV 58 (361)
Q Consensus 7 ~~~~~~~v~GKIVL~~r-----------------------~~k~~na~~aGA~GVIi~~n~~~~~-~----~~~~~iP~~ 58 (361)
.++...|++||||||.| ..|+.+|.++||+|||+|.+..... . +....-.++
T Consensus 39 ~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~~~~~~~ 118 (151)
T cd04822 39 DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRFGGTAPQ 118 (151)
T ss_pred hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCcccccccccCccceE
Confidence 45567799999999965 2589999999999999944433221 1 110111266
Q ss_pred EechhhhhHHHHH
Q 036163 59 AVSKDNFTSIYSY 71 (361)
Q Consensus 59 ~Is~~dG~~L~~~ 71 (361)
+|+....+.|...
T Consensus 119 ~~~~~~~~~~~~~ 131 (151)
T cd04822 119 RVDIAAADPWFTA 131 (151)
T ss_pred EechHHHHHHhhh
Confidence 6777766666654
No 64
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=97.39 E-value=0.00042 Score=69.30 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=58.9
Q ss_pred CCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCC-Cc--------ccceeeeEEEechhhhhHHHHHhhcC
Q 036163 10 DSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIG-KV--------SFVVSFPSVAVSKDNFTSIYSYLKST 75 (361)
Q Consensus 10 ~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~-~~--------~~~~~iP~~~Is~~dG~~L~~~~~~~ 75 (361)
...+++||++++.| .+|+..|+++||.++++ .|+..+ .+ ..+..||+++|++++|+.+..-..++
T Consensus 90 ~~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLli-in~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 90 LQSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLI-INNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CCccccceeEEEecccceeehhhhhhhhcCceEEEE-EcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 45689999999998 79999999999999999 776322 11 14668999999999999999877777
Q ss_pred CCcceee
Q 036163 76 KKPEAEI 82 (361)
Q Consensus 76 ~~~~~~i 82 (361)
.++++.+
T Consensus 169 ~~V~~~l 175 (541)
T KOG2442|consen 169 DNVELAL 175 (541)
T ss_pred CeEEEEE
Confidence 7666666
No 65
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=97.36 E-value=0.00025 Score=70.14 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=38.7
Q ss_pred CCCCCCcEEec---CCceeeccCCCCCCCCCCCCCccceeeeeCCccccHHHHHHHHHHHHhhCC
Q 036163 109 PDILKPDISAP---GVDILAAFSPFGVPIGDPLFKRQLTYSILSGTSMSCPHVAGVAAYVKSFHP 170 (361)
Q Consensus 109 ~~~~KPdi~AP---G~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p 170 (361)
.++-.|||+|. +...+.... +.+..+.|||+|||++||++|||.|++.
T Consensus 249 ~gR~~PDVaa~a~~~~g~~i~~~--------------g~~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 249 SGRGVPDVAANADPGTGYLVVVN--------------GQWYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred CCCcCCeeecccCCCCCEEEEEC--------------CeEEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 57889999998 455443332 3688899999999999999999999863
No 66
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=97.25 E-value=0.00046 Score=63.55 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeec
Q 036163 11 STLAKGKILICQS-----SDEFSEVLRSGAGGSVSLND 43 (361)
Q Consensus 11 ~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n 43 (361)
.-+++|||||+++ .+|+++|+++||+|||+|.+
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~D 104 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSD 104 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeC
Confidence 5689999999986 57999999999999999554
No 67
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.25 E-value=0.00079 Score=57.82 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCcEEEEEe-----------------------chHHHHHHHcCceEEEEeecC
Q 036163 6 QGCLDSTLAKGKILICQS-----------------------SDEFSEVLRSGAGGSVSLNDD 44 (361)
Q Consensus 6 ~~~~~~~~v~GKIVL~~r-----------------------~~k~~na~~aGA~GVIi~~n~ 44 (361)
..++..-|++|||||+.| ..|.++|+++||+|||+|.+.
T Consensus 38 ~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 38 WDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred hhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 456777899999999964 259999999999999994443
No 68
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.21 E-value=0.00045 Score=58.98 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCcEEEEEe-----------------chHHHHHHHcCceEEEEeec
Q 036163 6 QGCLDSTLAKGKILICQS-----------------SDEFSEVLRSGAGGSVSLND 43 (361)
Q Consensus 6 ~~~~~~~~v~GKIVL~~r-----------------~~k~~na~~aGA~GVIi~~n 43 (361)
..++...|++|||||+.+ .+|.++|.++||+|||+|.+
T Consensus 40 ~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 40 HDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred HhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 345667799999999986 25999999999999999444
No 69
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.10 E-value=0.0005 Score=59.29 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecC
Q 036163 12 TLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDD 44 (361)
Q Consensus 12 ~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~ 44 (361)
-+++|||||++. .+|+++|+++||+|+|||.+.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecCh
Confidence 579999999984 899999999999999995443
No 70
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=97.08 E-value=0.014 Score=46.69 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=66.4
Q ss_pred CCCCCCceeeecCCCCceeEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeeccCCCCe
Q 036163 258 RDLNYPSMAAQVSPGRSFTINFSRTVTNVGLANTTYKAKILQNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTI 337 (361)
Q Consensus 258 ~~lN~psi~~~~~~~~~~~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~ 337 (361)
..|++..+.+. ...+.+.+++|.|.....|++.......-.+++.|..-.+ ++|++.+++|+|.+.. . ...
T Consensus 9 ~~ldFG~v~~g------~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~-~g~ 79 (102)
T PF14874_consen 9 KELDFGNVFVG------QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-P-LGD 79 (102)
T ss_pred CEEEeeEEccC------CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-C-Cce
Confidence 34555554442 4567778889999999999987655334456677777666 8999999999999643 2 235
Q ss_pred EEEEEEEEcCCceEEeEEEEE
Q 036163 338 VSTSLIWADGNHNVRSPIVVH 358 (361)
Q Consensus 338 ~~G~l~~~~~~~~vr~P~~v~ 358 (361)
+.+.|...-.+..+.+|+-+.
T Consensus 80 ~~~~l~i~~e~~~~~i~v~a~ 100 (102)
T PF14874_consen 80 YEGSLVITTEGGSFEIPVKAE 100 (102)
T ss_pred EEEEEEEEECCeEEEEEEEEE
Confidence 788888875667888888765
No 71
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=96.15 E-value=0.028 Score=42.88 Aligned_cols=58 Identities=24% Similarity=0.156 Sum_probs=38.5
Q ss_pred eeEEEEEEEEEcCCCC-eeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeecc
Q 036163 275 FTINFSRTVTNVGLAN-TTYKAKILQNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRGL 332 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 332 (361)
...+++.+|+|.|... ...++++..|.|-++...|.++.--++|++++++++|+++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 6789999999999754 457888889999998888888754599999999999999863
No 72
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.021 Score=55.71 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=51.3
Q ss_pred CCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCC-CCCc------ccceeeeEEEechhhhhHHHHHhhcCC
Q 036163 12 TLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDK-IGKV------SFVVSFPSVAVSKDNFTSIYSYLKSTK 76 (361)
Q Consensus 12 ~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~-~~~~------~~~~~iP~~~Is~~dG~~L~~~~~~~~ 76 (361)
..-...++|+.| .+|+.+|+++|.+++|+ +|+. .+.+ .....+++++|+...|+.|++|...+.
T Consensus 76 ~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIV-ynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 76 TRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIV-YNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred CCCcceEEEEEccCCchHHHHhhcccccCceEEE-ecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcccc
Confidence 456778999998 89999999999999999 5544 3322 246689999999999999999865543
No 73
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.45 E-value=0.026 Score=49.36 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCCCCCCCCCcEEEEEe------------------------chHHHHHHHcCceEEEEeec
Q 036163 7 GCLDSTLAKGKILICQS------------------------SDEFSEVLRSGAGGSVSLND 43 (361)
Q Consensus 7 ~~~~~~~v~GKIVL~~r------------------------~~k~~na~~aGA~GVIi~~n 43 (361)
.++..-||+|||||+.+ ..|.+.|.++||+|||++.+
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 46667899999999984 13999999999999999333
No 74
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.0015 Score=63.50 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=59.7
Q ss_pred eeeCCccccHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCC--CCC----------CCCCCCCCCcccccccccCCC
Q 036163 146 SILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMN--SSK----------NKDAEFAFGSGHINPVEAVNP 213 (361)
Q Consensus 146 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~--~~~----------~~~~~~~~G~G~vn~~~A~~~ 213 (361)
..-||||.|+|-.||+.||.++++|.++..+++-+-.-|.+... +.. +-..+..+|+|.+|+.+.+..
T Consensus 379 ~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~l 458 (629)
T KOG3526|consen 379 RSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVML 458 (629)
T ss_pred cccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHH
Confidence 35699999999999999999999999999999887766664322 110 111456899999999877664
Q ss_pred CcccccchhhHHHHHhhCC
Q 036163 214 GLVYETFEQDYIIMLCSMG 232 (361)
Q Consensus 214 ~lv~d~~~~~y~~~lc~~~ 232 (361)
..-+...++. |-|..|
T Consensus 459 ak~wktvppr---yhc~ag 474 (629)
T KOG3526|consen 459 AKAWKTVPPR---YHCTAG 474 (629)
T ss_pred HHHhccCCCc---eeeccc
Confidence 4444444443 345544
No 75
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=95.07 E-value=0.24 Score=40.82 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=42.1
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeeccC
Q 036163 275 FTINFSRTVTNVGLANTTYKAKILQNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRGLS 333 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 333 (361)
-.-.++.+++|.+..+.+|++++..++|+++......+++ ++|++.++.|.+.++...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 4667889999999999999999999889999654478888 899999999999998743
No 76
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=92.68 E-value=2.5 Score=35.27 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=51.0
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEec----CCce--------------------EEEEEcCeEEEeeCCcEEEEEEEEEee
Q 036163 275 FTINFSRTVTNVGLANTTYKAKILQ----NSKI--------------------GVKVVPQALTFKSLNEKKSFRVTVTGR 330 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~v~~----~~g~--------------------~v~v~p~~~~~~~~g~~~~~~vt~~~~ 330 (361)
...++..+|+|.++...+|.+++.. ..|+ -+++ |..+++ +++|+++++++++.|
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 6888999999999999999988764 1221 1112 566888 899999999999998
Q ss_pred ccCCCCeEEEEEEEE
Q 036163 331 GLSNGTIVSTSLIWA 345 (361)
Q Consensus 331 ~~~~~~~~~G~l~~~ 345 (361)
...-...+-|.|.+.
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 754445666777654
No 77
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=90.57 E-value=0.25 Score=42.82 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=48.5
Q ss_pred CCCCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecCCCCC--c-------c----cceeeeEEEechhhhhHHHHH
Q 036163 10 DSTLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDDKIGK--V-------S----FVVSFPSVAVSKDNFTSIYSY 71 (361)
Q Consensus 10 ~~~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~~~~~--~-------~----~~~~iP~~~Is~~dG~~L~~~ 71 (361)
+.-++.|.|+|++| ..|..+++++||.++|+ .++.... + + +...||++++-..+|-.++.-
T Consensus 82 N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiii-td~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~s 160 (193)
T KOG3920|consen 82 NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIII-TDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVS 160 (193)
T ss_pred hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEE-ecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehh
Confidence 34467889999998 68999999999999999 6544321 1 1 456899999988888766655
Q ss_pred hhcC
Q 036163 72 LKST 75 (361)
Q Consensus 72 ~~~~ 75 (361)
++.-
T Consensus 161 L~r~ 164 (193)
T KOG3920|consen 161 LKRY 164 (193)
T ss_pred HHHh
Confidence 5443
No 78
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=90.09 E-value=4 Score=33.49 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=46.0
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEec---CC----ceEEEEEcCeEEEeeCCcEEEEEEEEEeeccCCCCeEEEEEEEE
Q 036163 276 TINFSRTVTNVGLANTTYKAKILQ---NS----KIGVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTIVSTSLIWA 345 (361)
Q Consensus 276 ~~~~~rtvtnvg~~~~ty~~~v~~---~~----g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~~~ 345 (361)
..+.+.+|+|.|+....+.+.+.. .. .-.+.++|..+.+ ++|+++.++| +.....+.+.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 346778999999887777777775 11 1246789999999 8999999999 6644423332223355553
No 79
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=86.31 E-value=6.6 Score=31.18 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=41.3
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeec
Q 036163 275 FTINFSRTVTNVGLANTTYKAKILQNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRG 331 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 331 (361)
.......+|+|.++....|.+....|..+. |.|..-.+ .+|++..+.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 346677799999999999999988888775 57998878 8999999999998754
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=84.96 E-value=7.6 Score=39.57 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=53.5
Q ss_pred eeEEEEEEEEEcCCCCe-eEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeeccCCCCeEEEEEEE
Q 036163 275 FTINFSRTVTNVGLANT-TYKAKILQNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTIVSTSLIW 344 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~-ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~~ 344 (361)
...++...+.|.|+.+. .-++++..|.|-++.|+|.++---++|+.+++.+|++++......-++=.|+-
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ 467 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITA 467 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEE
Confidence 46777888999998654 45788999999999999998766699999999999999874322233334433
No 81
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=84.61 E-value=5.4 Score=40.64 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=48.9
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeec
Q 036163 275 FTINFSRTVTNVGLANTTYKAKILQNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRG 331 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 331 (361)
-...++..+.|.++.+.+|+.+++..++.++...++.+++ ++||+.++.|.+..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 4667888899999999999999999999998875458888 8999999999999875
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=81.04 E-value=25 Score=35.94 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=51.4
Q ss_pred CCCCCceeeecCCCCceeEEEEEEEEEcCCCCeeEEEEEe-cCCceEEEEEcC-----eEEEeeCCcEEEEEEEEEeec
Q 036163 259 DLNYPSMAAQVSPGRSFTINFSRTVTNVGLANTTYKAKIL-QNSKIGVKVVPQ-----ALTFKSLNEKKSFRVTVTGRG 331 (361)
Q Consensus 259 ~lN~psi~~~~~~~~~~~~~~~rtvtnvg~~~~ty~~~v~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~vt~~~~~ 331 (361)
.||.-++.+.... ..+..++.++.|.|..+..|..++. .|+|.+..+.-. ++.+ .+||+++++|.+.++.
T Consensus 270 El~~s~~~~~i~~--~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 270 ELNSSDIYLEISP--STTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred EeecccceeEEcc--CCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 3454444433332 2467888999999999999999999 688776655432 4566 8999999999999875
No 83
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=80.90 E-value=5.9 Score=30.16 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=29.6
Q ss_pred EEEEEcCeEEEeeCCcEEEEEEEEEeeccCCCCeEEEEEEEEcCC
Q 036163 304 GVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTIVSTSLIWADGN 348 (361)
Q Consensus 304 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~~~~~~ 348 (361)
.+++.|..+++ ..|+++.|+++++... . .- ...+.|.+.+
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~-~--~~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS-A--KV-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC-C--Cc-cceEEEEECC
Confidence 46788999999 7999999999976543 1 12 6778897543
No 84
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.13 E-value=1.5 Score=49.26 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.9
Q ss_pred eeeeeCCccccHHHHHHHHHHHHhhC
Q 036163 144 TYSILSGTSMSCPHVAGVAAYVKSFH 169 (361)
Q Consensus 144 ~y~~~sGTSmAaP~VAG~aALl~~~~ 169 (361)
.....-|||.|+|..||+.|++-|..
T Consensus 472 ~~~~~GGTS~AtPltAGiiAdi~q~~ 497 (1174)
T COG4934 472 QTYVAGGTSLATPLTAGIIADIEQYI 497 (1174)
T ss_pred EEEEecccccccchHHHHHHHHHHHh
Confidence 45677899999999999999999874
No 85
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=77.69 E-value=11 Score=32.28 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=38.7
Q ss_pred ecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeeccCCCCeEEEEEEEE
Q 036163 298 LQNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTIVSTSLIWA 345 (361)
Q Consensus 298 ~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~~~ 345 (361)
..-.++++.-.|..+++ +|++.++++.+++..... ..+.||.|+|.
T Consensus 93 at~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSte-tGvIfG~I~Yd 138 (140)
T PF07718_consen 93 ATLGDLKLVERPQPITL-APHGFARIKATIKVSSTE-TGVIFGNIVYD 138 (140)
T ss_pred EecCCcEEccCCCceee-CCCcEEEEEEEEEEEecc-CCEEEEEEEEe
Confidence 33467888888999999 899999999999998744 45899999986
No 86
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=64.47 E-value=61 Score=24.67 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=31.8
Q ss_pred eeEEEEEEEEEcCCCC-eeEEEEEecCCceEEEEEcCeE-EEeeCCcEEEEEEEEEee
Q 036163 275 FTINFSRTVTNVGLAN-TTYKAKILQNSKIGVKVVPQAL-TFKSLNEKKSFRVTVTGR 330 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~-~ty~~~v~~~~g~~v~v~p~~~-~~~~~g~~~~~~vt~~~~ 330 (361)
...+++.+|+|.|... ..+.+.+... |..+. -..+ .+ ++|++.++++++..+
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~~--~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSVS--TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEEE--EEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Cceec--cEEECCc-CCCcEEEEEEEEEeC
Confidence 5788999999999864 4556655443 33331 1122 45 789999888888876
No 87
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=63.63 E-value=85 Score=26.00 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=44.8
Q ss_pred eeEEEEEEEEEcCCCCeeEEEE------EecCCce----EEEE---EcCeEEEeeCCcEEEEEEEEEeeccCCC--CeEE
Q 036163 275 FTINFSRTVTNVGLANTTYKAK------ILQNSKI----GVKV---VPQALTFKSLNEKKSFRVTVTGRGLSNG--TIVS 339 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~------v~~~~g~----~v~v---~p~~~~~~~~g~~~~~~vt~~~~~~~~~--~~~~ 339 (361)
+...+..++||.|+. +.++. .....|. .+.- .+..+++ ++|++..+.|.........+ ....
T Consensus 18 g~~~~~l~~tN~s~~--~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~~~~~~~~~~ 94 (131)
T PF14016_consen 18 GQRHATLTFTNTSDT--PCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGSGGGCKPVTP 94 (131)
T ss_pred CccEEEEEEEECCCC--cEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCCCCCcCcccc
Confidence 566888999999864 34432 1112222 1111 2556888 89999999999988654333 1222
Q ss_pred EEEEEE--cCCceEEeEE
Q 036163 340 TSLIWA--DGNHNVRSPI 355 (361)
Q Consensus 340 G~l~~~--~~~~~vr~P~ 355 (361)
..|... ++...+++|+
T Consensus 95 ~~l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 95 AGLTVTPPGGTAPVTVPW 112 (131)
T ss_pred CEEEEECCCCCccEEEeC
Confidence 233332 4555555553
No 88
>PLN03080 Probable beta-xylosidase; Provisional
Probab=62.06 E-value=35 Score=37.54 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=44.0
Q ss_pred eEEEEEEEEEcCCCCeeEEEE--EecCCc-----eEEEEEcCeEEEeeCCcEEEEEEEEEe-ecc----CCCCeE--EEE
Q 036163 276 TINFSRTVTNVGLANTTYKAK--ILQNSK-----IGVKVVPQALTFKSLNEKKSFRVTVTG-RGL----SNGTIV--STS 341 (361)
Q Consensus 276 ~~~~~rtvtnvg~~~~ty~~~--v~~~~g-----~~v~v~p~~~~~~~~g~~~~~~vt~~~-~~~----~~~~~~--~G~ 341 (361)
..+|+.+|||+|+.+....+- +..|.+ ++--+--+++.+ ++||++++++++.. ... ..+.|. .|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~ 763 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLGD 763 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCcc
Confidence 478999999999865444332 333321 111111234456 89999999888876 321 223443 355
Q ss_pred EEEE--cCCceEEeE
Q 036163 342 LIWA--DGNHNVRSP 354 (361)
Q Consensus 342 l~~~--~~~~~vr~P 354 (361)
..+. +..|.|+++
T Consensus 764 y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 764 HVLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEEeCCccceEEe
Confidence 4332 456777654
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=61.70 E-value=35 Score=22.97 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=24.7
Q ss_pred EEEEcCCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEE
Q 036163 282 TVTNVGLANTTYKAKILQNSKIGVKVVPQALTFKSLNEKKSFRVTV 327 (361)
Q Consensus 282 tvtnvg~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~ 327 (361)
+++|+|+....-+ .++..=|=.. +..+.=.+ ++||+..++|++
T Consensus 3 ~~~N~g~~~L~I~-~v~tsCgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 3 EFTNTGDSPLVIT-DVQTSCGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEECCCCcEEEE-EeeEccCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 5789998654332 2222223222 23333345 899999998874
No 90
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=60.82 E-value=72 Score=29.72 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=44.3
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEec---C---Cc----------eEEEEEcCeEEEeeCCcEEEEEEEEEeeccCCCCeEE
Q 036163 276 TINFSRTVTNVGLANTTYKAKILQ---N---SK----------IGVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTIVS 339 (361)
Q Consensus 276 ~~~~~rtvtnvg~~~~ty~~~v~~---~---~g----------~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~ 339 (361)
......+|.|.|+....+.+++.. | .+ -++-++|..|++ ++|+++.++|.-.... ..+.++
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg~~--~kE~~Y 108 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQAP--EREEAW 108 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcCCC--CcEEEE
Confidence 445567889999888777776653 2 11 157789999999 8999999987655432 223333
Q ss_pred EEEEEE
Q 036163 340 TSLIWA 345 (361)
Q Consensus 340 G~l~~~ 345 (361)
+|.|+
T Consensus 109 -Rl~~~ 113 (234)
T PRK15308 109 -RVYFE 113 (234)
T ss_pred -EEEEE
Confidence 56654
No 91
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=58.66 E-value=5.1 Score=40.79 Aligned_cols=67 Identities=28% Similarity=0.294 Sum_probs=52.2
Q ss_pred eeCCccccHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCC-----C---CCCCCCcccccccccCCC
Q 036163 147 ILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKSAIMTTARPMNSSKNK-----D---AEFAFGSGHINPVEAVNP 213 (361)
Q Consensus 147 ~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~~~~-----~---~~~~~G~G~vn~~~A~~~ 213 (361)
--.|||.++|+.||+.+|.+++.|.++-.++..+...++......... . ....+|+|++|....+..
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVSC 325 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhhh
Confidence 346999999999999999999999999999999888888643321111 0 335789999998877663
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=51.00 E-value=92 Score=23.92 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=12.2
Q ss_pred eEEEeeCCcEEEEEEEEEeec
Q 036163 311 ALTFKSLNEKKSFRVTVTGRG 331 (361)
Q Consensus 311 ~~~~~~~g~~~~~~vt~~~~~ 331 (361)
..++ ++||+++|+.++....
T Consensus 53 ~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 53 EETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEE--TT-EEEEEEEESS--
T ss_pred EEEE-CCCCEEEEEEEECCCC
Confidence 4466 8899999988776654
No 93
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=49.12 E-value=1.9e+02 Score=28.80 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=27.2
Q ss_pred eeEEEEEEEEEcCCCCeeEEEE-----Ee--cC----------------CceEEEEEcCeEEEeeCCcEEEEEEEEE
Q 036163 275 FTINFSRTVTNVGLANTTYKAK-----IL--QN----------------SKIGVKVVPQALTFKSLNEKKSFRVTVT 328 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~-----v~--~~----------------~g~~v~v~p~~~~~~~~g~~~~~~vt~~ 328 (361)
++.+++.+|||.|+.... --. ++ .| .|+ +|+|++ -+ ++||+++++|+.+
T Consensus 263 R~l~~~l~VtN~g~~pv~-LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL--~vs~~~-pI-~PGETrtl~V~a~ 334 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVR-LGEFNTANVRFLNPDVPTDDPDYPDELLAERGL--SVSDNS-PI-APGETRTLTVEAQ 334 (381)
T ss_dssp SEEEEEEEEEEESSS-BE-EEEEESSS-EEE-TTT-SS-S---TTTEETT-E--EES--S--B--TT-EEEEEEEEE
T ss_pred cEEEEEEEEEcCCCCceE-eeeEEeccEEEeCcccccCCCCCchhhhccCcc--eeCCCC-Cc-CCCceEEEEEEee
Confidence 688899999999985431 111 11 11 133 445554 23 7999999999886
No 94
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=48.87 E-value=1.1e+02 Score=24.30 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=35.2
Q ss_pred eeEEEEEEEEEcCCCC-ee-----EEEEEecCCceE---EEEEcCeEEEeeCCcEEEEEEEEEeec
Q 036163 275 FTINFSRTVTNVGLAN-TT-----YKAKILQNSKIG---VKVVPQALTFKSLNEKKSFRVTVTGRG 331 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~-~t-----y~~~v~~~~g~~---v~v~p~~~~~~~~g~~~~~~vt~~~~~ 331 (361)
...++..+++|..+.. .+ -..++..+ |+. ....-..+++ ++||+.++++++....
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 5788999999998766 44 22233333 553 4555556777 8999999999988764
No 95
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=43.71 E-value=23 Score=38.30 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEe-----chHHHHHHHcCceEEEEeecC
Q 036163 12 TLAKGKILICQS-----SDEFSEVLRSGAGGSVSLNDD 44 (361)
Q Consensus 12 ~~v~GKIVL~~r-----~~k~~na~~aGA~GVIi~~n~ 44 (361)
-+++|||+|.+- .+|++++.++||.|||+|.+.
T Consensus 181 i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 181 INLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred ccccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 358899999974 789999999999999995543
No 96
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=43.01 E-value=11 Score=16.23 Aligned_cols=6 Identities=50% Similarity=0.867 Sum_probs=4.4
Q ss_pred ccCCCC
Q 036163 98 GFSSRG 103 (361)
Q Consensus 98 ~fSs~G 103 (361)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 578887
No 97
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=42.98 E-value=25 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=18.9
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcC
Q 036163 162 AAYVKSFHPDWSPSAIKSAIMTTA 185 (361)
Q Consensus 162 aALl~~~~p~~s~~~ik~~L~~tA 185 (361)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999997653
No 98
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=36.61 E-value=1.9e+02 Score=22.09 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=36.5
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeeccCCCCeEEEEE
Q 036163 276 TINFSRTVTNVGLANTTYKAKILQNSKIGVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTIVSTSL 342 (361)
Q Consensus 276 ~~~~~rtvtnvg~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l 342 (361)
...+..+++|.|....++++.-..-. .-.|.++++ ++|+++++...+. ....||.=.|
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l~----~s~gwYDl~v 76 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPLA----ASGGWYDLTV 76 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEeec----CCCCcEEEEE
Confidence 34788999999987777776542211 112456677 7888887776552 2246776333
No 99
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=36.55 E-value=2.1e+02 Score=22.67 Aligned_cols=58 Identities=12% Similarity=-0.052 Sum_probs=29.2
Q ss_pred eeEEEEEEEEEcCCCCeeEE---EEEecCCceEEEEEc---------CeEEEeeCCcEEEEEEEEEeeccC
Q 036163 275 FTINFSRTVTNVGLANTTYK---AKILQNSKIGVKVVP---------QALTFKSLNEKKSFRVTVTGRGLS 333 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~---~~v~~~~g~~v~v~p---------~~~~~~~~g~~~~~~vt~~~~~~~ 333 (361)
.-..+..+|+|.|+.+..+. ..+....|-...... ..-++ ++|++.+..+.|.++...
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~~~ 105 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPKDD 105 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEESTT-
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECCCC
Confidence 45778889999988655432 222222222222111 23355 788888888888887633
No 100
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=36.52 E-value=2.2e+02 Score=27.18 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=5.4
Q ss_pred eEEEEEEEE
Q 036163 337 IVSTSLIWA 345 (361)
Q Consensus 337 ~~~G~l~~~ 345 (361)
--.|.+.|.
T Consensus 288 ~~~g~~~W~ 296 (317)
T PF13598_consen 288 EKDGILEWK 296 (317)
T ss_pred CCCCEEEEE
Confidence 345667775
No 101
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=36.28 E-value=1.2e+02 Score=21.19 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=24.3
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEe--cCCceEEEEEcCeEEE
Q 036163 275 FTINFSRTVTNVGLANTTYKAKIL--QNSKIGVKVVPQALTF 314 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~v~--~~~g~~v~v~p~~~~~ 314 (361)
...+++.+++|.|+...+ .+.+. -|+|++. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~-~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPAT-NVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceE-eEEEEEcCCCCCEE--EeCcEEE
Confidence 578999999999986543 33333 3666653 3666554
No 102
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=36.14 E-value=75 Score=25.63 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=30.2
Q ss_pred eeEEEEEEEEEcCCCCe----eEEEEEec---------CCceEEEEEcC--eEEEeeCCcEEEEEE
Q 036163 275 FTINFSRTVTNVGLANT----TYKAKILQ---------NSKIGVKVVPQ--ALTFKSLNEKKSFRV 325 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~----ty~~~v~~---------~~g~~v~v~p~--~~~~~~~g~~~~~~v 325 (361)
+..+++.+|+|.|+.+- -|+.--.. .-|..+.+ |+ .+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVEL 81 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEE
Confidence 45678889999998542 23321111 12555555 44 4677 8899998876
No 103
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=35.85 E-value=18 Score=27.12 Aligned_cols=37 Identities=22% Similarity=0.508 Sum_probs=27.0
Q ss_pred EEEEEcCeEEEeeCCcEEEEEEEEEeeccCCCCeEEEEEEEEc
Q 036163 304 GVKVVPQALTFKSLNEKKSFRVTVTGRGLSNGTIVSTSLIWAD 346 (361)
Q Consensus 304 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~l~~~~ 346 (361)
+|++.|..+++ ..|++..|++++....... ..+.|.+
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~~~~~~-----~~v~w~s 40 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTPSDGSN-----SKVTWSS 40 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEEEESTT-----SCEEEEE
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEECCCcE-----eEEEEEe
Confidence 35677888888 8899999988888776332 4566753
No 104
>PRK15019 CsdA-binding activator; Provisional
Probab=35.41 E-value=36 Score=29.42 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=26.1
Q ss_pred eCCccccHHHHHHHHHHHHhhCCCCCHHHHHH
Q 036163 148 LSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKS 179 (361)
Q Consensus 148 ~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 179 (361)
+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 33444 48999999999999999999999865
No 105
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=35.40 E-value=1.8e+02 Score=26.78 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=36.2
Q ss_pred eeEEEEEEEEEcCCCCeeEEE--EEecC---CceEEEEEcCeEEEeeCCcEEEEEEEEEe
Q 036163 275 FTINFSRTVTNVGLANTTYKA--KILQN---SKIGVKVVPQALTFKSLNEKKSFRVTVTG 329 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~--~v~~~---~g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 329 (361)
.....+.+|+|.++. .|-+ .++.. ....+.|+|..+.+ .+|+++.++|....
T Consensus 38 ~~~~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~~ 94 (230)
T PRK09918 38 SDGEGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILKS 94 (230)
T ss_pred CCCeEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECC
Confidence 356677888998864 3443 33221 12357789999999 89999999987654
No 106
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=34.96 E-value=97 Score=34.01 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=33.7
Q ss_pred eeEEEEEEEEEcCCCCeeE--EEEEecCCceEEEEEc-------CeEEEeeCCcEEEEEEEEEeec
Q 036163 275 FTINFSRTVTNVGLANTTY--KAKILQNSKIGVKVVP-------QALTFKSLNEKKSFRVTVTGRG 331 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty--~~~v~~~~g~~v~v~p-------~~~~~~~~g~~~~~~vt~~~~~ 331 (361)
...+++.+|||+|+.+..- .+=+..|.+- + ..| +++.+ ++||++++++++....
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~-~~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-M-SRPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-C-CCHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 4688999999999854322 2223333221 1 122 24456 8999999998888654
No 107
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=34.53 E-value=97 Score=22.85 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=19.3
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEec--CCceEE
Q 036163 275 FTINFSRTVTNVGLANTTYKAKILQ--NSKIGV 305 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~v~~--~~g~~v 305 (361)
...+++.+|+|.|+... ..+.+.- |+|+++
T Consensus 41 d~v~ytitvtN~G~~~a-~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPA-TNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCee-EeEEEEEcCCCCCEE
Confidence 57889999999997653 3344333 555543
No 108
>PRK13203 ureB urease subunit beta; Reviewed
Probab=34.25 E-value=73 Score=25.74 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=30.0
Q ss_pred eeEEEEEEEEEcCCCCe----eEEEEEec---------CCceEEEEEcC--eEEEeeCCcEEEEEE
Q 036163 275 FTINFSRTVTNVGLANT----TYKAKILQ---------NSKIGVKVVPQ--ALTFKSLNEKKSFRV 325 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~----ty~~~v~~---------~~g~~v~v~p~--~~~~~~~g~~~~~~v 325 (361)
+..+++.+|+|.|+.+- -|+.--.. .-|..+.+ |+ .+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVEL 81 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 45678889999998542 23321111 12555555 44 4677 7899998876
No 109
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=34.20 E-value=39 Score=28.85 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=27.2
Q ss_pred eeeCCccccHHHHHHHHHHHHhhCCCCCHHHHHH
Q 036163 146 SILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKS 179 (361)
Q Consensus 146 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 179 (361)
..+.|.| =|+.|-|++||+.+.+-..+|++|.+
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3344555 38999999999999999999999864
No 110
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=33.75 E-value=32 Score=21.97 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.7
Q ss_pred ccHHHHHHHHHHH
Q 036163 153 MSCPHVAGVAAYV 165 (361)
Q Consensus 153 mAaP~VAG~aALl 165 (361)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998743
No 111
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=33.48 E-value=2.2e+02 Score=22.91 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=25.8
Q ss_pred eeEEEEEEEEEcCCCCee----EEEEEecC---------CceEEEEEcC--eEEEeeCCcEEEEEE
Q 036163 275 FTINFSRTVTNVGLANTT----YKAKILQN---------SKIGVKVVPQ--ALTFKSLNEKKSFRV 325 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~t----y~~~v~~~---------~g~~v~v~p~--~~~~~~~g~~~~~~v 325 (361)
+..+++.+|+|.|+.+-. |+.--..+ -|..+.+ |+ .+.| .+|+++++++
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-PaGTavRF-EPG~~k~V~L 80 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDI-PAGTAVRF-EPGDTKEVEL 80 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-S-STT-EEEE--TT-EEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCc-CCCCeEEE-CCCCcEEEEE
Confidence 457888999999986421 11100001 2556655 44 4677 7899888876
No 112
>PRK13202 ureB urease subunit beta; Reviewed
Probab=33.02 E-value=87 Score=25.38 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=29.2
Q ss_pred EEEEEEEEEcCCCCe----eEEEEEec---------CCceEEEEEcC--eEEEeeCCcEEEEEE
Q 036163 277 INFSRTVTNVGLANT----TYKAKILQ---------NSKIGVKVVPQ--ALTFKSLNEKKSFRV 325 (361)
Q Consensus 277 ~~~~rtvtnvg~~~~----ty~~~v~~---------~~g~~v~v~p~--~~~~~~~g~~~~~~v 325 (361)
.+++.+|+|.|+.+- -|+.--.. .-|..+.+ |+ .+.| .+|+++++++
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 82 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDI-PAATAVRF-EPGIPQIVGL 82 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCccccc-CCCCeEEE-CCCCeEEEEE
Confidence 578899999998542 23321111 12555555 43 4677 7899988876
No 113
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=32.63 E-value=88 Score=25.23 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=30.0
Q ss_pred eeEEEEEEEEEcCCCCe----eEEEEEec---------CCceEEEEEcC--eEEEeeCCcEEEEEE
Q 036163 275 FTINFSRTVTNVGLANT----TYKAKILQ---------NSKIGVKVVPQ--ALTFKSLNEKKSFRV 325 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~----ty~~~v~~---------~~g~~v~v~p~--~~~~~~~g~~~~~~v 325 (361)
+..+++.+|+|.|+.+- -|+.--.. .-|..+.+ |+ .+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDI-PSGTAVRF-EPGEEKSVEL 81 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 35678889999998542 23321111 12555555 44 4677 8999998876
No 114
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=32.32 E-value=1.1e+02 Score=21.59 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=26.3
Q ss_pred ceeeeeCCccccHHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 036163 143 LTYSILSGTSMSCPHVAGVAA------YVKSFHPDWSPSAIKSAIM 182 (361)
Q Consensus 143 ~~y~~~sGTSmAaP~VAG~aA------Ll~~~~p~~s~~~ik~~L~ 182 (361)
++--.+.||-+..=.+....+ -+.+.||.++.++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 355678899888777766643 2566799999999999885
No 115
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.53 E-value=46 Score=28.65 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=24.8
Q ss_pred eCCccccHHHHHHHHHHHHhhCCCCCHHHHH
Q 036163 148 LSGTSMSCPHVAGVAAYVKSFHPDWSPSAIK 178 (361)
Q Consensus 148 ~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik 178 (361)
+.|=|= ++.|.|.+|++.+.+-..+|++|.
T Consensus 74 F~gdSd-A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 74 FFGDSD-ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred Eeccch-hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 334343 799999999999999999999984
No 116
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=30.33 E-value=49 Score=28.21 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=26.5
Q ss_pred eeCCccccHHHHHHHHHHHHhhCCCCCHHHHHH
Q 036163 147 ILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKS 179 (361)
Q Consensus 147 ~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 179 (361)
.+.|-| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 334445 48999999999999999999999864
No 117
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=29.61 E-value=86 Score=31.30 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=39.6
Q ss_pred CCCCCcEEEEEe-----chH--HHHHHHcCceEEEEeecCCCCC------cc-----cceeeeEEEechhhhhHHH
Q 036163 12 TLAKGKILICQS-----SDE--FSEVLRSGAGGSVSLNDDKIGK------VS-----FVVSFPSVAVSKDNFTSIY 69 (361)
Q Consensus 12 ~~v~GKIVL~~r-----~~k--~~na~~aGA~GVIi~~n~~~~~------~~-----~~~~iP~~~Is~~dG~~L~ 69 (361)
.|..|++++-.+ .-| ...|..+||.|+|+ ..+++.. .. .+..||++.+...++..+.
T Consensus 86 gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f-~~~~~rriV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~ 160 (486)
T COG4882 86 GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLF-ESRDPRRIVTGGDWGYSVSSSPTPIPVAVVPENYSRYAE 160 (486)
T ss_pred CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEE-ecCCceeEEecccccccCCCCCCCcceEEeccCcchhhc
Confidence 478888888876 122 23678899999999 6655421 11 4678999999888887443
No 118
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=29.57 E-value=52 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=25.4
Q ss_pred eeCCccccHHHHHHHHHHHHhhCCCCCHHHHHH
Q 036163 147 ILSGTSMSCPHVAGVAAYVKSFHPDWSPSAIKS 179 (361)
Q Consensus 147 ~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 179 (361)
.+.|.|= ++.|-|++||+.+.+-..+|++|.+
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~ 90 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILA 90 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHH
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445554 6799999999999999999999865
No 119
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=29.57 E-value=5.7e+02 Score=28.87 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=19.5
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcCCC
Q 036163 161 VAAYVKSFHPDWSPSAIKSAIMTTARP 187 (361)
Q Consensus 161 ~aALl~~~~p~~s~~~ik~~L~~tA~~ 187 (361)
+.-=++|+||+.+.+|+..+....+..
T Consensus 322 ~l~el~~~~p~~~~~~l~~~a~~~~~~ 348 (928)
T TIGR00845 322 ILKELKQKHPDKDLEQLEEMANYQVLS 348 (928)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhc
Confidence 334467889999999988777665533
No 120
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.42 E-value=1.9e+02 Score=28.89 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=34.7
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEec---CCceEEEEEcCeEEEe-eCCcEEEEEEEEEee
Q 036163 276 TINFSRTVTNVGLANTTYKAKILQ---NSKIGVKVVPQALTFK-SLNEKKSFRVTVTGR 330 (361)
Q Consensus 276 ~~~~~rtvtnvg~~~~ty~~~v~~---~~g~~v~v~p~~~~~~-~~g~~~~~~vt~~~~ 330 (361)
..++.--++|.+.+ ++.+.++. |.|++++|.|+..++. ...+++.|.|+++..
T Consensus 91 dFkV~ADLt~a~~G--t~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tkk~~V~vei~ 147 (403)
T COG4856 91 DFKVVADLTHAGVG--THEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTKKFPVSVEID 147 (403)
T ss_pred CeEEEEEhhhcCCC--ceEeeeEeecCCCCceEEEccceeEEEEeeeeEEEEeeeEEEc
Confidence 35555567787755 45555443 8899999999975552 334556677776654
No 121
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=27.31 E-value=1e+02 Score=22.59 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=21.5
Q ss_pred eEEEeeCCcEEEEEEEEEeeccCC--CCeEEEEEEEEcC
Q 036163 311 ALTFKSLNEKKSFRVTVTGRGLSN--GTIVSTSLIWADG 347 (361)
Q Consensus 311 ~~~~~~~g~~~~~~vt~~~~~~~~--~~~~~G~l~~~~~ 347 (361)
+++|...|+.-+-++||++..... ....-..|.|+|.
T Consensus 15 Sitf~W~g~~t~atLtFePg~Glg~~n~~pVatl~W~Ds 53 (68)
T PF09244_consen 15 SITFTWTGATTSATLTFEPGRGLGVDNTTPVATLAWTDS 53 (68)
T ss_dssp EEEEEEE-SS-EEEEEE-GGGC-STT--S--EEEEEEET
T ss_pred EEEEEEeccccEEEEEEccCcccCccCCcceeEEEEecc
Confidence 567777778888888999875321 2234578999974
No 122
>PRK13205 ureB urease subunit beta; Reviewed
Probab=27.25 E-value=1e+02 Score=26.80 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=30.3
Q ss_pred eeEEEEEEEEEcCCCCe----eEEEEEecC---------CceEEEEEcC--eEEEeeCCcEEEEEE
Q 036163 275 FTINFSRTVTNVGLANT----TYKAKILQN---------SKIGVKVVPQ--ALTFKSLNEKKSFRV 325 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~----ty~~~v~~~---------~g~~v~v~p~--~~~~~~~g~~~~~~v 325 (361)
+..+++.+|+|+|+.+- -|+.--..+ -|..+.+ |+ .+.| .||+++++++
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdI-PAGTAVRF-EPGe~ktV~L 81 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDI-PSGTAVRL-EPGDARTVNL 81 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 45678899999998542 333211111 2555555 44 4677 7899888876
No 123
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=26.48 E-value=94 Score=20.40 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcC
Q 036163 161 VAAYVKSFHPDWSPSAIKSAIMTTA 185 (361)
Q Consensus 161 ~aALl~~~~p~~s~~~ik~~L~~tA 185 (361)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4566889999999999999998654
No 124
>PRK13201 ureB urease subunit beta; Reviewed
Probab=25.53 E-value=1.2e+02 Score=25.79 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=29.9
Q ss_pred eeEEEEEEEEEcCCCCe----eEEEEEec---------CCceEEEEEcC--eEEEeeCCcEEEEEE
Q 036163 275 FTINFSRTVTNVGLANT----TYKAKILQ---------NSKIGVKVVPQ--ALTFKSLNEKKSFRV 325 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~----ty~~~v~~---------~~g~~v~v~p~--~~~~~~~g~~~~~~v 325 (361)
+..+++.+|+|+|+.+- -|+.--.. .-|..+.+ |+ .+.| .||+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~L 81 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDI-PAGAAVRF-EPGDKKEVQL 81 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 35678889999998542 23321111 12555555 44 4677 7899988876
No 125
>PRK13204 ureB urease subunit beta; Reviewed
Probab=23.57 E-value=1.3e+02 Score=26.25 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=30.4
Q ss_pred eeEEEEEEEEEcCCCCe----eEEEEEec---------CCceEEEEEcC--eEEEeeCCcEEEEEE
Q 036163 275 FTINFSRTVTNVGLANT----TYKAKILQ---------NSKIGVKVVPQ--ALTFKSLNEKKSFRV 325 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~----ty~~~v~~---------~~g~~v~v~p~--~~~~~~~g~~~~~~v 325 (361)
+..+++.+|+|.|+.+- -|+.--.. .-|..+.+ |+ .+.| .+|+++++++
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~L 104 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDI-PANTAVRF-EPGDEKEVTL 104 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeeEEEE
Confidence 45678899999998542 23321111 12555555 44 4677 7899988876
No 126
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=22.56 E-value=3.6e+02 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=21.0
Q ss_pred CCeeEEEEEecC----CceEEEEEcCeEEEee
Q 036163 289 ANTTYKAKILQN----SKIGVKVVPQALTFKS 316 (361)
Q Consensus 289 ~~~ty~~~v~~~----~g~~v~v~p~~~~~~~ 316 (361)
.+..|.+.++.| ..++|++....|++++
T Consensus 8 ~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g 39 (86)
T cd06475 8 TADRWKVSLDVNHFAPEELVVKTKDGVVEITG 39 (86)
T ss_pred cCCeEEEEEECCCCCHHHEEEEEECCEEEEEE
Confidence 345688888875 5788888888888853
No 127
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=22.38 E-value=6.1e+02 Score=23.23 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=35.8
Q ss_pred eeEEEEEEEEEcCCCCeeEEEE--EecC------CceEEEEEcCeEEEeeCCcEEEEEEEEEee
Q 036163 275 FTINFSRTVTNVGLANTTYKAK--ILQN------SKIGVKVVPQALTFKSLNEKKSFRVTVTGR 330 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~--v~~~------~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 330 (361)
..+..+.+|+|.++. .|-+. ++.. ....+.++|.-+++ .+|+++.++|.....
T Consensus 36 ~~~~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl-~p~~~q~lRI~~~~~ 96 (227)
T PRK15299 36 DAKDASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRL-NGGQKNVLRIIRTGG 96 (227)
T ss_pred CCcEEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEE-CCCCccEEEEEECCC
Confidence 356777888897764 34332 2211 12347789999999 899999999876643
No 128
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=22.24 E-value=1.1e+02 Score=23.30 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.4
Q ss_pred chHHHHHHHcCceEEEE
Q 036163 24 SDEFSEVLRSGAGGSVS 40 (361)
Q Consensus 24 ~~k~~na~~aGA~GVIi 40 (361)
.+.+...+++||.+|++
T Consensus 53 ~~~~~~Lk~~GA~~Ilv 69 (75)
T PF08029_consen 53 WDLMDKLKAAGASDILV 69 (75)
T ss_dssp HHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 67788999999999999
No 129
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=21.36 E-value=1e+02 Score=30.73 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=31.2
Q ss_pred eeEEEEEEEEEcCCCCee----EEEEEe-------------cCC-----ceEEEEEcCeEEEeeCCcEEEEEEEEEe
Q 036163 275 FTINFSRTVTNVGLANTT----YKAKIL-------------QNS-----KIGVKVVPQALTFKSLNEKKSFRVTVTG 329 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~t----y~~~v~-------------~~~-----g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 329 (361)
+.-+++.+|||.|+.... .++.+. .|+ |++| ++++ -+ .+||+++++|+.+-
T Consensus 282 R~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v--~d~~-pI-~PGETr~v~v~aqd 354 (399)
T TIGR03079 282 RALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEV--DDQS-AI-APGETVEVKMEAKD 354 (399)
T ss_pred cEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhcccee--CCCC-Cc-CCCcceEEEEEEeh
Confidence 577888899999875321 122221 122 4443 4443 23 79999999887763
No 130
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=21.00 E-value=6.8e+02 Score=23.26 Aligned_cols=55 Identities=7% Similarity=0.065 Sum_probs=36.5
Q ss_pred eeEEEEEEEEEcCCCCeeEEEEEec------CCc--eEEEEEcCeEEEeeCCcEEEEEEEEEee
Q 036163 275 FTINFSRTVTNVGLANTTYKAKILQ------NSK--IGVKVVPQALTFKSLNEKKSFRVTVTGR 330 (361)
Q Consensus 275 ~~~~~~rtvtnvg~~~~ty~~~v~~------~~g--~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 330 (361)
+.+..+.+|+|.++...-..+-++. |.. ..+.|+|.-+.+ .+|+.+.++|.....
T Consensus 39 ~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl-~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 39 DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRI-DPKRGQTIKLMYTAS 101 (246)
T ss_pred CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEE-CCCCccEEEEEeCCC
Confidence 3566778888988653222222322 111 236789999999 899999999887654
Done!