BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036165
         (566 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/521 (65%), Positives = 420/521 (80%), Gaps = 1/521 (0%)

Query: 47   SASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIV 106
            +A+ A + LIN   +   Y+     R+F  S   Y++ I++Y RDRAL  G+ LHA L++
Sbjct: 772  AAAAAMQSLINRANVYRVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVI 831

Query: 107  SGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTV 166
             GLARLT  A KL++FYTEC  + +AR LFD+IP TNI RWI LTGA ARRG+++EA++ 
Sbjct: 832  IGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSA 891

Query: 167  FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
            F EM  +GL+ N FV+PS+LKACGHLSD  TGE +H+++LK+SF +DA+++S+LI MYSK
Sbjct: 892  FSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSK 951

Query: 227  CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
            CG VEKA +VFD +V+KD+V MNAMVSGY Q G   EALBLV+++    VKPNVV+WNTL
Sbjct: 952  CGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTL 1011

Query: 287  ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
            I+GFS+ GD+ MVS++F+LM A GVEPDVVSWTSVISG V NF N E FD FKEML QGF
Sbjct: 1012 IAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGF 1071

Query: 347  CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            CP+S TISS+LPAC + AN+R GKEIHG A+V+GVE D++VRSALVDMYAKCG+ISEA+ 
Sbjct: 1072 CPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKI 1131

Query: 407  LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
            LF  M ERNTVTWNS+IFG ANHGYC+EAIELFNQMEE   KLDHL+FTAVL AC H G+
Sbjct: 1132 LFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGM 1191

Query: 466  VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            VELG+ LF  MQEKY+I PR EHYACMVDLLGRAG+L+EAY++IK M  EPD FVWGALL
Sbjct: 1192 VELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALL 1251

Query: 526  GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            GAC+NHGNIELAE+AA+HL ELEPES  +++LL++LYA+AG
Sbjct: 1252 GACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAG 1292



 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 153/513 (29%), Positives = 265/513 (51%), Gaps = 39/513 (7%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R+  ++ G+  H  ++  GL     + T LI  Y +C  +  A  ++D++   +      
Sbjct: 125 REGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNC 184

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L  AYAR G+  +A  VF ++   G + N +   ++L  CG +S I  G+++H+ V+K  
Sbjct: 185 LISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQ 244

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           + ++  V ++L+ +YSKCG +E+A+ VF+ + +++I++  A ++G+ Q G   +AL    
Sbjct: 245 YLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFS 304

Query: 270 EIGTPRVKPNVVTWN-----------------------------------TLISGFSKSG 294
            +    ++PN  T++                                    +I  +S  G
Sbjct: 305 MMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLG 364

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           +     K F+ M   G     VSW ++I+G V N   ++A + F  M+ +       T S
Sbjct: 365 EMDEAEKQFKQM---GRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYS 421

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           +I  AC+S  ++    +IH   I   VE +LHV S+L++ Y +CG +  A  +F ++S+ 
Sbjct: 422 NIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDA 481

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V+WNS+I   + +G   +AI L  +M EE  K    +F  VL+AC H GLV+ GQ  F
Sbjct: 482 DVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFF 541

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M + Y I P   H +CMVD+LGRAG+L  A + IK ++ +P   +W  LL AC+ + N
Sbjct: 542 KSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSN 601

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +++AE  A+ + +LEP  A   + L+++YA  G
Sbjct: 602 LQMAEYVAEKILDLEPNDATVYVTLSNMYAEVG 634



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 177/399 (44%), Gaps = 54/399 (13%)

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
           +Q +F   S L  CG    +  G + H  V+K   G+D FV +SLIDMY+KCG V+ A +
Sbjct: 113 RQYVF---SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVR 169

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------ 283
           V+D+M   D    N ++S Y + G   +A  +  +IG    +PN  T+            
Sbjct: 170 VYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISA 229

Query: 284 -----------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
                                  N L++ +SK G       +F+ +R +    +++SWT+
Sbjct: 230 IQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQR----NIISWTA 285

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
            I+G   +    +A   F  M   G  P   T S +L +C    +   G+  H   I  G
Sbjct: 286 SINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKG 345

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELF 439
           +   + V +A++DMY+  G + EA   F +M    + V+WN++I G   +   ++A+E F
Sbjct: 346 MASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAF 405

Query: 440 NQM-EERKKLDHLSFTAVLTACCH----VGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
            +M +E    +  +++ +  AC         V++  RL      K  +       + +++
Sbjct: 406 CRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLI-----KSNVESNLHVASSLIE 460

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
              + G L  A ++   +S + D+  W +++ A   +G+
Sbjct: 461 AYTQCGSLENAVQVFTQIS-DADVVSWNSIIKAYSQNGD 498



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 186/409 (45%), Gaps = 43/409 (10%)

Query: 57  NGIFIEA-HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG F++A    M I +     +   YS  + +     A+Q GK LHA ++       T +
Sbjct: 192 NGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAV 251

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
              L+T Y++C  +  A ++F+ + + NI  W A    + + G  ++A+  F  M   G+
Sbjct: 252 GNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGI 311

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
           + N F    VL +CG + D   G   H+ V+K    +  FV +++IDMYS  G +++A+K
Sbjct: 312 EPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEK 371

Query: 236 VFDEMVE-KDIVAMNAMVSGYVQRGLATEALN----LVEE-------------------- 270
            F +M      V+ NA+++GYV      +A+     +V+E                    
Sbjct: 372 QFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFP 431

Query: 271 -------IGTPRVKPNVVT----WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                  I +  +K NV +     ++LI  +++ G      ++F  +     + DVVSW 
Sbjct: 432 SLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQIS----DADVVSWN 487

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV- 378
           S+I     N    +A    ++M+ +G  PTS T  ++L AC+ +  ++ G+E     +  
Sbjct: 488 SIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQD 547

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT-WNSMIFGC 426
             ++ +    S +VD+  + G +  A     K++ + T + W  ++  C
Sbjct: 548 YSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAAC 596



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           GF P    + S L  C     +  G+  H   + +G+  D  V ++L+DMYAKCG +  A
Sbjct: 109 GF-PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV 463
             ++DKM+  +  T N +I   A +G+  +A ++F Q+     + +H +++ +L  C  +
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI 227

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G++L   +  K + +  T     ++ L  + G + EA E++     + ++  W A
Sbjct: 228 SAIQEGKQLHAHVV-KMQYLSETAVGNALLTLYSKCGMMEEA-EIVFESLRQRNIISWTA 285

Query: 524 LLGACKNHGNIE--LAEIAAKHLSELEPESAANNMLL 558
            +     HG+ +  L + +    S +EP     +++L
Sbjct: 286 SINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVL 322


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/515 (65%), Positives = 416/515 (80%), Gaps = 1/515 (0%)

Query: 53  KPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           + LIN   +   Y+     R+F  S   Y++ I++Y RDRAL  G+ LHA L++ GLARL
Sbjct: 2   QSLINRANVYRVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARL 61

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
           T  A KL++FYTEC  + +AR LFD+IP TNI RWI LTGA ARRG+++EA++ F EM  
Sbjct: 62  TYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQK 121

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
           +GL+ N FV+PS+LKACGHLSD  TGE +H+++LK+SF +DA+++S+LI MYSKCG VEK
Sbjct: 122 EGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEK 181

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A +VFD +V+KD+V MNAMVSGY Q G   EALNLV+++    VKPNVV+WNTLI+GFS+
Sbjct: 182 ACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQ 241

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            GD+ MVS++F+LM A GVEPDVVSWTSVISG V NF N E FD FKEML QGFCP+S T
Sbjct: 242 VGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVT 301

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           ISS+LPAC + AN+R GKEIHG A+V+GVE D++VRSALVDMYAKCG+ISEA+ LF  M 
Sbjct: 302 ISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMP 361

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
           ERNTVTWNS+IFG ANHGYC+EAIELFNQMEE   KLDHL+FTAVL AC H G+VELG+ 
Sbjct: 362 ERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGES 421

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
           LF  MQEKY+I PR EHYACMVDLLGRAG+L+EAY++IK M  EPD FVWGALLGAC+NH
Sbjct: 422 LFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNH 481

Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GNIELAE+AA+HL ELEPES  +++LL++LYA+AG
Sbjct: 482 GNIELAEVAAEHLFELEPESPGSSLLLSNLYADAG 516


>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/503 (67%), Positives = 401/503 (79%), Gaps = 5/503 (0%)

Query: 69  IISRSFHLS-PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
           IISR F  S P +Y+E I++Y RDRAL +GK LHA L+ +G AR   +A+ L++FYT C 
Sbjct: 17  IISRHFFRSEPESYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCG 76

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH-IQGLKQN-IFVIPSV 185
            + HAR LFD+IP TN+ RWIAL G+ AR G++  A+ VF EM  +QGL  N +FVIPSV
Sbjct: 77  QLSHARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSV 136

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           LKACGH+ D  TGEKIH  +LK SF  D+FV SSLI MYSKC  VE A+KVFD M  KD 
Sbjct: 137 LKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDT 196

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           VA+NA+V+GYVQ+G A EAL LVE +    +KPNVVTWN+LISGFS+ GDQ  VS++F+L
Sbjct: 197 VALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRL 256

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M A GVEPDVVSWTSVISG V NF N EAFDTFK+MLS GF PTSATIS++LPACA+AA 
Sbjct: 257 MIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAAR 316

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G+EIHG A+V GVEGD++VRSALVDMYAKCGFISEAR LF +M E+NTVTWNS+IFG
Sbjct: 317 VSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFG 376

Query: 426 CANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
            ANHGYC+EAIELFNQME+    KLDHL+FTA LTAC HVG  ELGQRLF +MQEKY I 
Sbjct: 377 FANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIE 436

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           PR EHYACMVDLLGRAG+L EAY MIKTM  EPDLFVWGALL AC+NH ++ELAE+AA H
Sbjct: 437 PRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAACRNHRHVELAEVAAMH 496

Query: 544 LSELEPESAANNMLLTDLYANAG 566
           L ELEPESAAN +LL+ +YA+AG
Sbjct: 497 LMELEPESAANPLLLSSVYADAG 519



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 147/366 (40%), Gaps = 81/366 (22%)

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-----DIVAMNAMVSGYV 256
           + ++ +H F ++    + LIDMY++  ++   KK+   +V       ++VA N +VS Y 
Sbjct: 15  NGIISRHFFRSEPESYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASN-LVSFYT 73

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV 316
             G  + A  L ++I T     NV  W  LI   ++ G                      
Sbjct: 74  CCGQLSHARKLFDKIPT----TNVRRWIALIGSCARCG---------------------- 107

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSA-TISSILPACASAANMRRGKEIHG 374
                          D A   F EM + QG  P     I S+L AC    +   G++IHG
Sbjct: 108 -------------FYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHG 154

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
             +    E D  V S+L+ MY+KC  + +AR +FD M+ ++TV  N+++ G    G  +E
Sbjct: 155 FILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANE 214

Query: 435 AIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
           A+ L   M    KL  L    V       G  + G +                       
Sbjct: 215 ALGLVESM----KLMGLKPNVVTWNSLISGFSQKGDQ----------------------- 247

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHLSE-LEPESA 552
                GR++E + ++     EPD+  W +++ G  +N  N E  +   + LS    P SA
Sbjct: 248 -----GRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSA 302

Query: 553 ANNMLL 558
             + LL
Sbjct: 303 TISALL 308


>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
 gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
          Length = 547

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/510 (63%), Positives = 401/510 (78%), Gaps = 2/510 (0%)

Query: 59  IFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK 118
           +F+ A  + P I R F  S   Y E IE   R+R L  G+ LHA+LI+ G ARLT  A K
Sbjct: 9   VFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAK 68

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
            I FY  C  I  AR+LFD+IP+TN  RWI L GAY+R GY+ EA++VF E+   GL+ +
Sbjct: 69  FIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPS 128

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            ++IPSVLKACGHLS+  TG K+H+L+LK+S  +DA+V S+LIDMY+K G VEKA++VF+
Sbjct: 129 EYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFE 188

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M  KD+VA+NAMVSGY   GLA EALNLVEE+    +KPN+VTWNTL++GFS+ G++ M
Sbjct: 189 SMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEEM 248

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           V +LF+ M A G+EPDVVSWTSVISG V NF N+EAFDTF+ ML+ GF PTSATISS+LP
Sbjct: 249 VRELFKEMEANGIEPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSATISSLLP 308

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACAS  N R GKEIHG ++ +GVE D++VR+ALVDMYAKCG+  EA+ LF +MSERN+ T
Sbjct: 309 ACASVGNGRCGKEIHGHSLALGVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSERNSAT 368

Query: 419 WNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           WNSMIFG ANHGYC+EAIELF+QM  ++ KKLDHL+FTA+LTAC H GLV+LG+ LF +M
Sbjct: 369 WNSMIFGYANHGYCNEAIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSLFQLM 428

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           Q KY I+PR EHYACMVD+ GRAG+LAEAY++IKTM  +PDL+VWGALLGAC+ HG IEL
Sbjct: 429 QSKYGIVPRVEHYACMVDVFGRAGKLAEAYDLIKTMPVKPDLYVWGALLGACRKHGEIEL 488

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE AAKHLSELEP S  N++LL+D+YANAG
Sbjct: 489 AEEAAKHLSELEPGSVGNSLLLSDIYANAG 518


>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 547

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/516 (63%), Positives = 399/516 (77%), Gaps = 4/516 (0%)

Query: 55  LINGI-FIEAHYKMPIISRSFHLSPA-AYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           +I GI F   H+K+PII RSF  S    + E I+ Y RD AL  GK LHA+LIVSGLA  
Sbjct: 4   VIRGITFHGPHFKIPIIYRSFQSSSLHTFDELIKTYTRDHALNQGKHLHARLIVSGLASS 63

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
              A+KLI+FYTE + +   R LFD IPK N ++   L GAY+R G++Q+ + VF EM  
Sbjct: 64  NNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQN 123

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
           + L+ N FVIPSVL+ACGH+ D+ TG+ +HS++L+H F +D  V ++LIDMYS+C  VEK
Sbjct: 124 ERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFESDVVVNTALIDMYSRCRHVEK 183

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A+KVFD M EKD+VA+NAMV GY Q G A E   LVE++    +KPN+VTWNTLISGF++
Sbjct: 184 ARKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQ 243

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           +GD+VMV +LF LM   G EPDV+SWTSVIS  V N  N+ AF  FK+ML  G  P SAT
Sbjct: 244 AGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSAT 303

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           ISS+LPACAS AN+R G+E+HG A  +GVE D++VRSA+VDMY+KCG ISEAR LF KM 
Sbjct: 304 ISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKMP 363

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQME--ERKKLDHLSFTAVLTACCHVGLVELGQ 470
           ER+TVTWNSMIFG ANHGYCDEAIELFNQME  E KK+DHLSFTAVLTAC H  LVELGQ
Sbjct: 364 ERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLTACSHGRLVELGQ 423

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
            LF +M EKYKI+PR EHYACM+DLLGRAG+L+EAY+MIKTM  EPDLFVWGALLGAC+ 
Sbjct: 424 SLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTMPVEPDLFVWGALLGACRQ 483

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           HG I+LAEIAA+HL+ELEP +A NNMLL++LYA+AG
Sbjct: 484 HGEIDLAEIAARHLAELEPRNAGNNMLLSNLYADAG 519


>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/493 (66%), Positives = 384/493 (77%), Gaps = 4/493 (0%)

Query: 78  PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
           P +Y++ IE Y   R+LQ GK LHA L  +G  R   IA+ LIT YT C  +  AR LFD
Sbjct: 29  PESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFD 88

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH-IQGLKQN-IFVIPSVLKACGHLSDI 195
           +IP+TNIHRWIAL    AR G+H  A+ VF EM  +   K N +FVIPSVLKACGH+ D 
Sbjct: 89  KIPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDR 148

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             GE++H LVLK SF  DAFV S+LI MYSKCG V  A+KVFD MV KD+VAMNA+VSGY
Sbjct: 149 IYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVVSGY 208

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
            Q+GL  EAL+LVE +    V PNVVTWN LISGF++  D+ MVS++F+LM    VEPDV
Sbjct: 209 AQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMVSEIFRLMNEDRVEPDV 268

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           VSWTSV+SG V NF N+EAFD FK+ML  GFCPTSATIS++LPACA+ A +R GKEIHG 
Sbjct: 269 VSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPACATEARVRFGKEIHGY 328

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
           A+V+GVE DL+VRSALVDMYAKCGFISEARTLF KM E+NTVT NSMIFG ANHG C+EA
Sbjct: 329 ALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMNSMIFGYANHGCCEEA 388

Query: 436 IELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           IELFNQME     KLDHL+FTA LTAC HVG +ELGQRLF +MQEKY I PR EHYACMV
Sbjct: 389 IELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYCIEPRLEHYACMV 448

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           DL GRAG+L EAY +IK+M  +PDLFVWGALL AC+NHG++ELAE+AAKHLSELEPESA 
Sbjct: 449 DLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHVELAEVAAKHLSELEPESAG 508

Query: 554 NNMLLTDLYANAG 566
           N +LL+ LYA+AG
Sbjct: 509 NRLLLSSLYADAG 521


>gi|297796913|ref|XP_002866341.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312176|gb|EFH42600.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/492 (60%), Positives = 378/492 (76%), Gaps = 1/492 (0%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LS  +Y E IE   RDR L  G +LHA L+ SG+ARLT+IA KL++FY EC  +  AR +
Sbjct: 14  LSIGSYVELIEANSRDRLLCGGIVLHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKV 73

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FDE+PK +I  W+ + GA AR GY+QE++ +F EM+ +GLK ++F++PS+LKA  +L D 
Sbjct: 74  FDEMPKRDISGWVVMIGACARYGYYQESLDIFREMNKEGLKLDVFIVPSLLKASRNLLDR 133

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G+ IH LVLK SF +DAF+VSSLIDMYSK G V  A+KVFD++ E+D+V  NAM+SGY
Sbjct: 134 EFGKMIHCLVLKCSFESDAFIVSSLIDMYSKFGEVVNARKVFDDLGEQDLVVFNAMISGY 193

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
                A EALNLV+++    +KP+++TWN LISGFS  G++  VS++ +LM   G  PDV
Sbjct: 194 ANNSQADEALNLVKDMKLLGIKPDIITWNALISGFSHMGNEEKVSEILELMCLDGYMPDV 253

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           VSWTS+ISGLVHNF N++AFD FK+ML+ G  P SATI+++LPAC + ANM+ GKEIHG 
Sbjct: 254 VSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATITTLLPACTTLANMKHGKEIHGY 313

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
           ++V G+E    VRSAL+DMY KCGFISEA  LF K  ++ TVT+NSMIF  ANHG  D+A
Sbjct: 314 SVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLSDKA 373

Query: 436 IELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
           +ELF+QME   +KLDHL+FTA+LTAC H GL +LGQ LF++MQ KY+I PR EHYACMVD
Sbjct: 374 VELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFHLMQTKYRIEPRLEHYACMVD 433

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554
           LLGRAG+L EAYEM+KTM  EPDLFVWGALLGAC+NHGN+ELA IAAK L+ELEPE++ N
Sbjct: 434 LLGRAGKLVEAYEMMKTMRMEPDLFVWGALLGACRNHGNMELARIAAKRLAELEPENSGN 493

Query: 555 NMLLTDLYANAG 566
            +LLT LYA+ G
Sbjct: 494 GLLLTSLYADVG 505


>gi|15238469|ref|NP_200768.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170472|sp|Q9FGR2.1|PP436_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g59600
 gi|10177776|dbj|BAB11040.1| unnamed protein product [Arabidopsis thaliana]
 gi|71143062|gb|AAZ23922.1| At5g59600 [Arabidopsis thaliana]
 gi|332009827|gb|AED97210.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/503 (59%), Positives = 377/503 (74%), Gaps = 2/503 (0%)

Query: 66  KMPIISRSFHL-SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
           K+ I+  SF L S  +Y E IE   RDR    G++LHA L+ SG+ARLT+IA KL+TFY 
Sbjct: 3   KLTIVPSSFRLLSIGSYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYV 62

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
           EC  +  AR +FDE+PK +I   + + GA AR GY+QE++  F EM+  GLK + F++PS
Sbjct: 63  ECGKVLDARKVFDEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPS 122

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +LKA  +L D   G+ IH LVLK S+ +DAF+VSSLIDMYSK G V  A+KVF ++ E+D
Sbjct: 123 LLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQD 182

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +V  NAM+SGY     A EALNLV+++    +KP+V+TWN LISGFS   ++  VS++ +
Sbjct: 183 LVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILE 242

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           LM   G +PDVVSWTS+ISGLVHNF N++AFD FK+ML+ G  P SATI ++LPAC + A
Sbjct: 243 LMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLLPACTTLA 302

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            M+ GKEIHG ++V G+E    VRSAL+DMY KCGFISEA  LF K  ++ TVT+NSMIF
Sbjct: 303 YMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIF 362

Query: 425 GCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
             ANHG  D+A+ELF+QME   +KLDHL+FTA+LTAC H GL +LGQ LF +MQ KY+I+
Sbjct: 363 CYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIV 422

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           PR EHYACMVDLLGRAG+L EAYEMIK M  EPDLFVWGALL AC+NHGN+ELA IAAKH
Sbjct: 423 PRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKH 482

Query: 544 LSELEPESAANNMLLTDLYANAG 566
           L+ELEPE++ N +LLT LYANAG
Sbjct: 483 LAELEPENSGNGLLLTSLYANAG 505


>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
 gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
          Length = 429

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/399 (69%), Positives = 334/399 (83%), Gaps = 2/399 (0%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M  QGL  N FVIPSVLK CGH+ D+ TG  +HS++LK+S  +D +V+SSLIDMYSKCG 
Sbjct: 1   MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
           VEKA++VFD MVEKD+VA+NAM+SGY Q G A E   L++++    +KPNV+TWN+LISG
Sbjct: 61  VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISG 120

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           F++ GD  MVSK+F+LM + GVEPDV+SWTSVISGLV NF N+ AFD FK+ML +GF PT
Sbjct: 121 FAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPT 180

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           SATIS++L ACA+ AN+RRG+EIHG A+V+ VE D++VRSALVDMYAKCGFISEA  LF 
Sbjct: 181 SATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFY 240

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQME--ERKKLDHLSFTAVLTACCHVGLVE 467
            M ERNTVTWNSMIFG ANHGYCDEAIELF+QME  E  KLDHL+FTAVLTAC H G+VE
Sbjct: 241 MMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVE 300

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            GQ LF +MQ+KYKI+PR EHYACMVDLLGRAG L EAY+MIK M  +PDLFVWGALLGA
Sbjct: 301 HGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGA 360

Query: 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           C+NHG+I LAE+AA+HL+ELEPE+A NNML+++LYA+AG
Sbjct: 361 CRNHGDIGLAEVAARHLAELEPENAGNNMLMSNLYADAG 399



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 162/353 (45%), Gaps = 29/353 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +Q+G+ILH+ ++   +     + + LI  Y++C  +  AR +FD + + ++    A+   
Sbjct: 26  VQTGRILHSVILKYSIESDVYVISSLIDMYSKCGEVEKARRVFDRMVEKDLVALNAMLSG 85

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G+ +E   +  +M   G+K N+    S++       D     K+  L++ +    D
Sbjct: 86  YGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISGFAQKGDDAMVSKMFELMISNGVEPD 145

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS---------GYVQRGLATEA 264
               +S+I    +    E A   F +M+ +  +  +A +S           V+RG     
Sbjct: 146 VISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRRGREIHG 205

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
             +V      RV+ ++   + L+  ++K G     S LF +M     E + V+W S+I G
Sbjct: 206 YAVV-----IRVEDDIYVRSALVDMYAKCGFISEASVLFYMMP----ERNTVTWNSMIFG 256

Query: 325 LV-HNFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
              H +C DEA + F +M  S+G      T +++L AC+ A  +  G+ +    ++M  +
Sbjct: 257 YANHGYC-DEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSLF---LLMQQK 312

Query: 383 GDLHVR----SALVDMYAKCGFISEARTLFDKMSER-NTVTWNSMIFGCANHG 430
             +  R    + +VD+  + G ++EA  +  KM  + +   W +++  C NHG
Sbjct: 313 YKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGACRNHG 365



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 86/187 (45%), Gaps = 3/187 (1%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           ++ R F  + A  S  +        ++ G+ +H   +V  +     + + L+  Y +C  
Sbjct: 172 MLGRGFLPTSATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGF 231

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLK 187
           I  A +LF  +P+ N   W ++   YA  GY  EA+ +F +M   +G K +     +VL 
Sbjct: 232 ISEASVLFYMMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLT 291

Query: 188 ACGHLSDIGTGEKIHSLV-LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDI 245
           AC H   +  G+ +  L+  K+         + ++D+  + G++ +A  +  +M V+ D+
Sbjct: 292 ACSHAGMVEHGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDL 351

Query: 246 VAMNAMV 252
               A++
Sbjct: 352 FVWGALL 358


>gi|357120134|ref|XP_003561784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Brachypodium distachyon]
          Length = 466

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/430 (51%), Positives = 300/430 (69%), Gaps = 10/430 (2%)

Query: 147 WIALTGAYARRGYHQEAVTVFH-----EMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEK 200
           W+    + +R+GYH  A+ +F      +  I+G +      +P+ L+AC HL+D  +G  
Sbjct: 8   WMKQLMSSSRQGYHGLALRLFFTRLSLQASIRGTVDPYPAAVPTALRACAHLADAASGRL 67

Query: 201 IHSLV-LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           IH+LV  + +  +D  V ++L+DMY+KCG V  A+KVFDEM  +D+V  NA+++GY + G
Sbjct: 68  IHALVQTRPALASDEVVSTALLDMYAKCGLVYSARKVFDEMPVRDLVVWNALLAGYARHG 127

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
           L   AL L  ++    + P++VTWN  +SGF+ +GD  M S L   M+  G++PDVV+WT
Sbjct: 128 LPEHALALAVKMRGLGLNPDLVTWNAAVSGFAMAGDDGMASDLVCAMQEDGLQPDVVTWT 187

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKEIHGCAI 377
           S++SG V NF    A   FK M++ G    P+SATISSILPA A+  +M+ GKEIHG A+
Sbjct: 188 SLVSGSVLNFQYGRARTLFKGMVAGGARVRPSSATISSILPAFATVGDMKHGKEIHGYAV 247

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
           V GVE +L VRS+L+DMY KCG + EAR LFD M+ER+TVTWNSMIFG AN+G+C EA+ 
Sbjct: 248 VTGVEQELTVRSSLIDMYTKCGLVHEARHLFDNMAERSTVTWNSMIFGLANYGHCGEAVG 307

Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF+ M  E  K DHL+FTAVLTAC + G+VE G+ L+ +MQE+Y + PR EHYACMV LL
Sbjct: 308 LFDWMLREGAKPDHLTFTAVLTACSYGGMVEKGKGLYRVMQEEYGMEPRLEHYACMVHLL 367

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
           GRAGRLAEA+  IK M  EPD FVWGALLGAC++HGN+ELAE+AA  L  +EP +AA+ +
Sbjct: 368 GRAGRLAEAHVFIKAMPVEPDRFVWGALLGACRSHGNVELAEMAASRLLTVEPGNAASYL 427

Query: 557 LLTDLYANAG 566
           LL+   A+AG
Sbjct: 428 LLSGALASAG 437



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 152/382 (39%), Gaps = 89/382 (23%)

Query: 96  SGKILHAQLIV-SGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           SG+++HA +     LA    ++T L+  Y +C  ++ AR +FDE+P  ++  W AL   Y
Sbjct: 64  SGRLIHALVQTRPALASDEVVSTALLDMYAKCGLVYSARKVFDEMPVRDLVVWNALLAGY 123

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-------------- 200
           AR G  + A+ +  +M   GL  ++    + +       D G                  
Sbjct: 124 ARHGLPEHALALAVKMRGLGLNPDLVTWNAAVSGFAMAGDDGMASDLVCAMQEDGLQPDV 183

Query: 201 ------IHSLVLKHSFG-----------------TDAFVVSSLIDMYSKCGSVEKAKKVF 237
                 +   VL   +G                   +  +SS++  ++  G ++  K++ 
Sbjct: 184 VTWTSLVSGSVLNFQYGRARTLFKGMVAGGARVRPSSATISSILPAFATVGDMKHGKEIH 243

Query: 238 DEM----VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
                  VE+++   ++++  Y + GL  EA +L + +     + + VTWN++I G +  
Sbjct: 244 GYAVVTGVEQELTVRSSLIDMYTKCGLVHEARHLFDNM----AERSTVTWNSMIFGLANY 299

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G       LF  M  +G +PD +++T+V++                              
Sbjct: 300 GHCGEAVGLFDWMLREGAKPDHLTFTAVLT------------------------------ 329

Query: 354 SSILPACASAANMRRGKEIHGCAIVM----GVEGDLHVRSALVDMYAKCGFISEARTLFD 409
                AC+    + +GK   G   VM    G+E  L   + +V +  + G ++EA     
Sbjct: 330 -----ACSYGGMVEKGK---GLYRVMQEEYGMEPRLEHYACMVHLLGRAGRLAEAHVFIK 381

Query: 410 KMS-ERNTVTWNSMIFGCANHG 430
            M  E +   W +++  C +HG
Sbjct: 382 AMPVEPDRFVWGALLGACRSHG 403



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 7/213 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +H   +V+G+ +   + + LI  YT+C  +H AR LFD + + +   W ++   
Sbjct: 236 MKHGKEIHGYAVVTGVEQELTVRSSLIDMYTKCGLVHEARHLFDNMAERSTVTWNSMIFG 295

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A  G+  EAV +F  M  +G K +     +VL AC +   +  G+ ++  V++  +G +
Sbjct: 296 LANYGHCGEAVGLFDWMLREGAKPDHLTFTAVLTACSYGGMVEKGKGLYR-VMQEEYGME 354

Query: 214 AFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +   + ++ +  + G + +A      M VE D     A++      G    A      
Sbjct: 355 PRLEHYACMVHLLGRAGRLAEAHVFIKAMPVEPDRFVWGALLGACRSHGNVELAEMAASR 414

Query: 271 IGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKL 302
           + T  V+P       L+SG  + +G Q  V K+
Sbjct: 415 LLT--VEPGNAASYLLLSGALASAGKQTDVFKI 445


>gi|218192520|gb|EEC74947.1| hypothetical protein OsI_10926 [Oryza sativa Indica Group]
          Length = 469

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/431 (49%), Positives = 297/431 (68%), Gaps = 11/431 (2%)

Query: 147 WIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIF-----VIPSVLKACGHLSDIGTGEK 200
           W+    + +R+G+H + + +F   + +Q   +         +P+ L+AC HL+D+ +G  
Sbjct: 9   WMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHLADVASGRL 68

Query: 201 IHSLVL-KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQR 258
           IH+LVL + +  +DA   ++L+DMYSKCG V  A+KVFDEM  + D V  NA+++ Y + 
Sbjct: 69  IHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALLACYARH 128

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
           GL   AL L  ++    + P++VTWN ++SGF+ +GD +M   L   M+  G +PDVV+W
Sbjct: 129 GLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALAGDDLMAGDLVGAMKDDGFQPDVVTW 188

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKEIHGCA 376
           TS +SG V NF    A   F+ M+  G    P+SATIS+ILPA A+ A+++ GKE+HG +
Sbjct: 189 TSRVSGSVLNFQYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYS 248

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           +V GVE +L V SALVDMYAKCG + EAR LFDKM +R+TVTWNSMIFG AN G+C EA+
Sbjct: 249 VVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAV 308

Query: 437 ELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
            LF++M  +  K DHL+FTAVLTAC + G+VE+G+ L+  MQ +Y + PR EHYACMV L
Sbjct: 309 GLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYSVEPRLEHYACMVHL 368

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           LGRAGRL EAY  I+ M  EPD FVWGALLGAC++HGNIELAE+AA  L  +EP++AA+ 
Sbjct: 369 LGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASC 428

Query: 556 MLLTDLYANAG 566
           +LL+   ANAG
Sbjct: 429 LLLSSALANAG 439



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 84/382 (21%)

Query: 94  LQSGKILHAQLIV-SGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALT 151
           + SG+++HA ++    LA     AT L+  Y++C  +  AR +FDE+  + +   W AL 
Sbjct: 63  VASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALL 122

Query: 152 GAYARRGYHQEAVTVFHEMHIQGL-----KQNIFV--------------IPSVLKACGHL 192
             YAR G  + A+ +  +M   GL       NI V              +   +K  G  
Sbjct: 123 ACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALAGDDLMAGDLVGAMKDDGFQ 182

Query: 193 SDIGT-GEKIHSLVLKHSFG-----------------TDAFVVSSLIDMYSKCGSVEKAK 234
            D+ T   ++   VL   +G                   +  +S+++  ++    V+  K
Sbjct: 183 PDVVTWTSRVSGSVLNFQYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGK 242

Query: 235 KVFD----EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           +V        VE+++   +A+V  Y + GL  EA  L +++     + + VTWN++I G 
Sbjct: 243 EVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKM----PQRSTVTWNSMIFGL 298

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           + SG       LF  M   G +PD +++T+V++                           
Sbjct: 299 ANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLT--------------------------- 331

Query: 351 ATISSILPACASAANMRRGKEIH-GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
                   AC+    +  GK ++    +   VE  L   + +V +  + G + EA     
Sbjct: 332 --------ACSYGGMVEVGKILYRAMQVEYSVEPRLEHYACMVHLLGRAGRLDEAYGFIR 383

Query: 410 KMS-ERNTVTWNSMIFGCANHG 430
            M  E +   W +++  C +HG
Sbjct: 384 AMPLEPDRFVWGALLGACRSHG 405



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 112/233 (48%), Gaps = 14/233 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +H   +V+G+ +   +++ L+  Y +C  +  AR LFD++P+ +   W ++   
Sbjct: 238 VKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFG 297

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFGT 212
            A  G+ QEAV +F  M   G K +     +VL AC +   +  G+ ++ ++ +++S   
Sbjct: 298 LANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYSVEP 357

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNL-VEE 270
                + ++ +  + G +++A      M +E D     A++      G      N+ + E
Sbjct: 358 RLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHG------NIELAE 411

Query: 271 IGTPR---VKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-DVVSW 318
           +   R   V+P N  +   L S  + +G Q  V K+ +L++ + ++  D  SW
Sbjct: 412 LAASRLLAVEPDNAASCLLLSSALANAGKQDDVFKIKRLVKRRRLKKLDSYSW 464


>gi|115452179|ref|NP_001049690.1| Os03g0271300 [Oryza sativa Japonica Group]
 gi|113548161|dbj|BAF11604.1| Os03g0271300, partial [Oryza sativa Japonica Group]
          Length = 484

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/431 (49%), Positives = 297/431 (68%), Gaps = 11/431 (2%)

Query: 147 WIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIF-----VIPSVLKACGHLSDIGTGEK 200
           W+    + +R+G+H + + +F   + +Q   +         +P+ L+AC HL+D+ +G  
Sbjct: 24  WMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHLADVASGRL 83

Query: 201 IHSLVL-KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQR 258
           IH+LVL + +  +DA   ++L+DMYSKCG V  A+KVFDEM  + D V  NA+++ Y + 
Sbjct: 84  IHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALLACYARH 143

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
           GL   AL L  ++    + P++VTWN ++SGF+ +GD +M   L   M+  G +PDVV+W
Sbjct: 144 GLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALAGDDLMAGDLVGAMKDDGFQPDVVTW 203

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKEIHGCA 376
           TS +SG V NF    A   F+ M+  G    P+SATIS+ILPA A+ A+++ GKE+HG +
Sbjct: 204 TSRVSGSVLNFQYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYS 263

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           +V GVE +L V SALVDMYAKCG + EAR LFDKM +R+TVTWNSMIFG AN G+C EA+
Sbjct: 264 VVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAV 323

Query: 437 ELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
            LF++M  +  K DHL+FTAVLTAC + G+VE+G+ L+  MQ +Y + PR EHYACMV L
Sbjct: 324 GLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHL 383

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           LGRAGRL EAY  I+ M  EPD FVWGALLGAC++HGNIELAE+AA  L  +EP++AA+ 
Sbjct: 384 LGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASC 443

Query: 556 MLLTDLYANAG 566
           +LL+   ANAG
Sbjct: 444 LLLSSALANAG 454



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 154/382 (40%), Gaps = 84/382 (21%)

Query: 94  LQSGKILHAQLIV-SGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALT 151
           + SG+++HA ++    LA     AT L+  Y++C  +  AR +FDE+  + +   W AL 
Sbjct: 78  VASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALL 137

Query: 152 GAYARRGYHQEAVTVFHEMHIQGL-----KQNIFV--------------IPSVLKACGHL 192
             YAR G  + A+ +  +M   GL       NI V              +   +K  G  
Sbjct: 138 ACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALAGDDLMAGDLVGAMKDDGFQ 197

Query: 193 SDIGT-GEKIHSLVLKHSFG-----------------TDAFVVSSLIDMYSKCGSVEKAK 234
            D+ T   ++   VL   +G                   +  +S+++  ++    V+  K
Sbjct: 198 PDVVTWTSRVSGSVLNFQYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGK 257

Query: 235 KVFD----EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           +V        VE+++   +A+V  Y + GL  EA  L +++     + + VTWN++I G 
Sbjct: 258 EVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKM----PQRSTVTWNSMIFGL 313

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           + SG       LF  M   G +PD +++T+V++                           
Sbjct: 314 ANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLT--------------------------- 346

Query: 351 ATISSILPACASAANMRRGKEIH-GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
                   AC+    +  GK ++    +  GVE  L   + +V +  + G + EA     
Sbjct: 347 --------ACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIR 398

Query: 410 KMS-ERNTVTWNSMIFGCANHG 430
            M  E +   W +++  C +HG
Sbjct: 399 AMPLEPDRFVWGALLGACRSHG 420



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 111/234 (47%), Gaps = 16/234 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +H   +V+G+ +   +++ L+  Y +C  +  AR LFD++P+ +   W ++   
Sbjct: 253 VKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFG 312

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A  G+ QEAV +F  M   G K +     +VL AC +   +  G KI    ++  +G +
Sbjct: 313 LANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVG-KILYRAMQVEYGVE 371

Query: 214 AFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNL-VE 269
             +   + ++ +  + G +++A      M +E D     A++      G      N+ + 
Sbjct: 372 PRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHG------NIELA 425

Query: 270 EIGTPR---VKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-DVVSW 318
           E+   R   V+P N  +   L S  + +G Q  V K+ +L++ + ++  D  SW
Sbjct: 426 ELAASRLLAVEPDNAASCLLLSSALANAGKQDDVFKIKRLVKRRRLKKLDSYSW 479


>gi|108707417|gb|ABF95212.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 469

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/431 (49%), Positives = 297/431 (68%), Gaps = 11/431 (2%)

Query: 147 WIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIF-----VIPSVLKACGHLSDIGTGEK 200
           W+    + +R+G+H + + +F   + +Q   +         +P+ L+AC HL+D+ +G  
Sbjct: 9   WMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHLADVASGRL 68

Query: 201 IHSLVL-KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQR 258
           IH+LVL + +  +DA   ++L+DMYSKCG V  A+KVFDEM  + D V  NA+++ Y + 
Sbjct: 69  IHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALLACYARH 128

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
           GL   AL L  ++    + P++VTWN ++SGF+ +GD +M   L   M+  G +PDVV+W
Sbjct: 129 GLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALAGDDLMAGDLVGAMKDDGFQPDVVTW 188

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKEIHGCA 376
           TS +SG V NF    A   F+ M+  G    P+SATIS+ILPA A+ A+++ GKE+HG +
Sbjct: 189 TSRVSGSVLNFQYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYS 248

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           +V GVE +L V SALVDMYAKCG + EAR LFDKM +R+TVTWNSMIFG AN G+C EA+
Sbjct: 249 VVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAV 308

Query: 437 ELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
            LF++M  +  K DHL+FTAVLTAC + G+VE+G+ L+  MQ +Y + PR EHYACMV L
Sbjct: 309 GLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHL 368

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           LGRAGRL EAY  I+ M  EPD FVWGALLGAC++HGNIELAE+AA  L  +EP++AA+ 
Sbjct: 369 LGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASC 428

Query: 556 MLLTDLYANAG 566
           +LL+   ANAG
Sbjct: 429 LLLSSALANAG 439



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 154/382 (40%), Gaps = 84/382 (21%)

Query: 94  LQSGKILHAQLIV-SGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALT 151
           + SG+++HA ++    LA     AT L+  Y++C  +  AR +FDE+  + +   W AL 
Sbjct: 63  VASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALL 122

Query: 152 GAYARRGYHQEAVTVFHEMHIQGL-----KQNIFV--------------IPSVLKACGHL 192
             YAR G  + A+ +  +M   GL       NI V              +   +K  G  
Sbjct: 123 ACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALAGDDLMAGDLVGAMKDDGFQ 182

Query: 193 SDIGT-GEKIHSLVLKHSFG-----------------TDAFVVSSLIDMYSKCGSVEKAK 234
            D+ T   ++   VL   +G                   +  +S+++  ++    V+  K
Sbjct: 183 PDVVTWTSRVSGSVLNFQYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGK 242

Query: 235 KVFD----EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           +V        VE+++   +A+V  Y + GL  EA  L +++     + + VTWN++I G 
Sbjct: 243 EVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKM----PQRSTVTWNSMIFGL 298

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           + SG       LF  M   G +PD +++T+V++                           
Sbjct: 299 ANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLT--------------------------- 331

Query: 351 ATISSILPACASAANMRRGKEIH-GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
                   AC+    +  GK ++    +  GVE  L   + +V +  + G + EA     
Sbjct: 332 --------ACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIR 383

Query: 410 KMS-ERNTVTWNSMIFGCANHG 430
            M  E +   W +++  C +HG
Sbjct: 384 AMPLEPDRFVWGALLGACRSHG 405



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 111/234 (47%), Gaps = 16/234 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +H   +V+G+ +   +++ L+  Y +C  +  AR LFD++P+ +   W ++   
Sbjct: 238 VKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFG 297

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A  G+ QEAV +F  M   G K +     +VL AC +   +  G KI    ++  +G +
Sbjct: 298 LANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVG-KILYRAMQVEYGVE 356

Query: 214 AFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNL-VE 269
             +   + ++ +  + G +++A      M +E D     A++      G      N+ + 
Sbjct: 357 PRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHG------NIELA 410

Query: 270 EIGTPR---VKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-DVVSW 318
           E+   R   V+P N  +   L S  + +G Q  V K+ +L++ + ++  D  SW
Sbjct: 411 ELAASRLLAVEPDNAASCLLLSSALANAGKQDDVFKIKRLVKRRRLKKLDSYSW 464


>gi|29893615|gb|AAP06869.1| chloroplast import-associated channel protein homolog [Oryza sativa
            Japonica Group]
          Length = 1273

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/431 (49%), Positives = 297/431 (68%), Gaps = 11/431 (2%)

Query: 147  WIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIF-----VIPSVLKACGHLSDIGTGEK 200
            W+    + +R+G+H + + +F   + +Q   +         +P+ L+AC HL+D+ +G  
Sbjct: 813  WMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHLADVASGRL 872

Query: 201  IHSLVL-KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQR 258
            IH+LVL + +  +DA   ++L+DMYSKCG V  A+KVFDEM  + D V  NA+++ Y + 
Sbjct: 873  IHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALLACYARH 932

Query: 259  GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
            GL   AL L  ++    + P++VTWN ++SGF+ +GD +M   L   M+  G +PDVV+W
Sbjct: 933  GLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALAGDDLMAGDLVGAMKDDGFQPDVVTW 992

Query: 319  TSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKEIHGCA 376
            TS +SG V NF    A   F+ M+  G    P+SATIS+ILPA A+ A+++ GKE+HG +
Sbjct: 993  TSRVSGSVLNFQYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYS 1052

Query: 377  IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
            +V GVE +L V SALVDMYAKCG + EAR LFDKM +R+TVTWNSMIFG AN G+C EA+
Sbjct: 1053 VVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAV 1112

Query: 437  ELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
             LF++M  +  K DHL+FTAVLTAC + G+VE+G+ L+  MQ +Y + PR EHYACMV L
Sbjct: 1113 GLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHL 1172

Query: 496  LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
            LGRAGRL EAY  I+ M  EPD FVWGALLGAC++HGNIELAE+AA  L  +EP++AA+ 
Sbjct: 1173 LGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASC 1232

Query: 556  MLLTDLYANAG 566
            +LL+   ANAG
Sbjct: 1233 LLLSSALANAG 1243



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 153/380 (40%), Gaps = 84/380 (22%)

Query: 96   SGKILHAQLIV-SGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGA 153
            SG+++HA ++    LA     AT L+  Y++C  +  AR +FDE+  + +   W AL   
Sbjct: 869  SGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALLAC 928

Query: 154  YARRGYHQEAVTVFHEMHIQGL-----KQNIFV--------------IPSVLKACGHLSD 194
            YAR G  + A+ +  +M   GL       NI V              +   +K  G   D
Sbjct: 929  YARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALAGDDLMAGDLVGAMKDDGFQPD 988

Query: 195  IGT-GEKIHSLVLKHSFG-----------------TDAFVVSSLIDMYSKCGSVEKAKKV 236
            + T   ++   VL   +G                   +  +S+++  ++    V+  K+V
Sbjct: 989  VVTWTSRVSGSVLNFQYGRARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEV 1048

Query: 237  FD----EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
                    VE+++   +A+V  Y + GL  EA  L +++     + + VTWN++I G + 
Sbjct: 1049 HGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKM----PQRSTVTWNSMIFGLAN 1104

Query: 293  SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            SG       LF  M   G +PD +++T+V++                             
Sbjct: 1105 SGHCQEAVGLFDRMLRDGAKPDHLTFTAVLT----------------------------- 1135

Query: 353  ISSILPACASAANMRRGKEIH-GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
                  AC+    +  GK ++    +  GVE  L   + +V +  + G + EA      M
Sbjct: 1136 ------ACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAM 1189

Query: 412  S-ERNTVTWNSMIFGCANHG 430
              E +   W +++  C +HG
Sbjct: 1190 PLEPDRFVWGALLGACRSHG 1209



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 22/237 (9%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            ++ GK +H   +V+G+ +   +++ L+  Y +C  +  AR LFD++P+ +   W ++   
Sbjct: 1042 VKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFG 1101

Query: 154  YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC--GHLSDIGTGEKIHSLVLKHSFG 211
             A  G+ QEAV +F  M   G K +     +VL AC  G + ++G   KI    ++  +G
Sbjct: 1102 LANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVG---KILYRAMQVEYG 1158

Query: 212  TDAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG------LAT 262
             +  +   + ++ +  + G +++A      M +E D     A++      G      LA 
Sbjct: 1159 VEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHGNIELAELAA 1218

Query: 263  EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-DVVSW 318
              L  VE         N  +   L S  + +G Q  V K+ +L++ + ++  D  SW
Sbjct: 1219 SRLLAVE-------PDNAASCLLLSSALANAGKQDDVFKIKRLVKRRRLKKLDSYSW 1268


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/512 (44%), Positives = 314/512 (61%), Gaps = 32/512 (6%)

Query: 57  NGIFIEA-HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG F++A    M I +     +   YS  + +     A+Q GK LHA ++       T +
Sbjct: 192 NGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAV 251

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
              L+T Y++C  +  A ++F+ + + NI  W A    + + G  ++A+  F  M   G+
Sbjct: 252 GNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGI 311

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
           + N F    VL +CG   D+G         +K    ++ +    L+ ++     +E+  K
Sbjct: 312 EPNEFTFSIVLASCG--CDLGK-------WMKQRTSSNRWGGQHLMSIFLLRKMIEEGNK 362

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
                  + ++       G++      E ++ V  I     + +    + LI  +SK G 
Sbjct: 363 PTSLRPNQFVLPSILKACGHLSDRRTGENMHTV--ILKNSFESDAYIISALIYMYSKCGH 420

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                ++F  +      P+VVSW ++I+G             F +ML QGFCP+S TISS
Sbjct: 421 VEKACRVFDWI------PNVVSWNTLIAG-------------FSQMLDQGFCPSSVTISS 461

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +LPAC + AN+R GKEIHG A+V+GVE D++VRSALVDMYAKCG+ISEA+ LF  M ERN
Sbjct: 462 LLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERN 521

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
           TVTWNS+IFG ANHGYC+EAIELFNQMEE   KLDHL+FTAVL AC H G+VELG+ LF 
Sbjct: 522 TVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFR 581

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            MQEKY+I PR EHYACMVDLLGRAG+L+EAY++IK M  EPD FVWGALLGAC+NHGNI
Sbjct: 582 KMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNI 641

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ELAE+AA+HL ELEPES  +++LL++LYA+AG
Sbjct: 642 ELAEVAAEHLFELEPESPGSSLLLSNLYADAG 673



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 219/470 (46%), Gaps = 85/470 (18%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R+  ++ G+  H  ++  GL     + T LI  Y +C  +  A  ++D++   +      
Sbjct: 125 REGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNC 184

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L  AYAR G+  +A  VF ++   G + N +   ++L  CG +S I  G+++H+ V+K  
Sbjct: 185 LISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQ 244

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           + ++  V ++L+ +YSKCG +E+A+ VF+ + +++I++  A ++G+ Q G   +AL    
Sbjct: 245 YLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKAL---- 300

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL---- 325
                                          K F +MR  G+EP+  +++ V++      
Sbjct: 301 -------------------------------KQFSMMRESGIEPNEFTFSIVLASCGCDL 329

Query: 326 ---------VHNFCNDEAFDTF--KEMLSQGFCPTSA-----TISSILPACASAANMRRG 369
                     + +        F  ++M+ +G  PTS       + SIL AC   ++ R G
Sbjct: 330 GKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSILKACGHLSDRRTG 389

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA-- 427
           + +H   +    E D ++ SAL+ MY+KCG + +A  +FD +   N V+WN++I G +  
Sbjct: 390 ENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIP--NVVSWNTLIAGFSQM 447

Query: 428 -NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            + G+C  ++               + +++L AC +V  +  G+ +       Y ++   
Sbjct: 448 LDQGFCPSSV---------------TISSLLPACTNVANLRHGKEI-----HGYAMVIGV 487

Query: 487 EH----YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           E      + +VD+  + G ++EA +++  M  E +   W +L+    NHG
Sbjct: 488 EKDVYVRSALVDMYAKCGYISEA-KILFYMMPERNTVTWNSLIFGYANHG 536



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 6/225 (2%)

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           GF P    + S L  C     +  G+  H   + +G+  D  V ++L+DMYAKCG +  A
Sbjct: 109 GF-PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV 463
             ++DKM+  +  T N +I   A +G+  +A ++F Q+     + +H +++ +L  C  +
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI 227

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G++L   +  K + +  T     ++ L  + G + EA E++     + ++  W A
Sbjct: 228 SAIQEGKQLHAHVV-KMQYLSETAVGNALLTLYSKCGMMEEA-EIVFENLGQRNIISWTA 285

Query: 524 LLGACKNHGNIE--LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +     HG+ +  L + +    S +EP     +++L     + G
Sbjct: 286 SINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCDLG 330


>gi|226531602|ref|NP_001146803.1| uncharacterized protein LOC100280408 [Zea mays]
 gi|195638542|gb|ACG38739.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|219888821|gb|ACL54785.1| unknown [Zea mays]
 gi|414866062|tpg|DAA44619.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 467

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/391 (52%), Positives = 277/391 (70%), Gaps = 6/391 (1%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKH--SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           +P+ L+AC  L +  +G  IH+LVL    S  +DA   ++L+DMY+KCG V  A++VFDE
Sbjct: 50  VPTALRACARLGNASSGRLIHALVLTRFPSLASDAVAATALLDMYAKCGLVASAQRVFDE 109

Query: 240 MVEKD-IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
           M  +D +VA NA+V+ Y +  L   AL L  ++    + P++VTWN ++SGF+ +GD  M
Sbjct: 110 MPSRDDLVAWNALVACYARHALPERALVLAIKMRGQCLCPDLVTWNAVVSGFALAGDDQM 169

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSI 356
            +KL   M   G +PDVV+WTS++SG V NF    A   F+ M++      P+SATI+SI
Sbjct: 170 ATKLVGAMEVDGFQPDVVTWTSLVSGSVLNFQYARARVLFRRMMTTANPVLPSSATIASI 229

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPA A+ A+++RGKE+H  A+V GVE +L+V SALVDMY K GF+ EAR LFDKMSER+T
Sbjct: 230 LPAFANVADVKRGKEVHAYAVVTGVEQELNVSSALVDMYTKSGFVVEARRLFDKMSERST 289

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           VTWNSMIFG AN G+C EAI LFN+M  +  + DHL+FTA LT C + G+VELG+ L+  
Sbjct: 290 VTWNSMIFGLANSGHCQEAIGLFNRMLCDGARPDHLTFTAALTVCSYAGMVELGKGLYRA 349

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQE++ I PR EH ACMV LLGRAG LAEAY+ IK M   PD FVWGALLGAC++HG+I+
Sbjct: 350 MQEEHGIEPRLEHCACMVHLLGRAGWLAEAYDFIKAMPLGPDCFVWGALLGACRSHGDIK 409

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           LAE+AA HL  +EP +AA+ +LL+D  A+ G
Sbjct: 410 LAELAASHLLTVEPANAASCLLLSDSLASVG 440



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 150/351 (42%), Gaps = 25/351 (7%)

Query: 96  SGKILHAQLIV--SGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTG 152
           SG+++HA ++     LA     AT L+  Y +C  +  A+ +FDE+P + ++  W AL  
Sbjct: 65  SGRLIHALVLTRFPSLASDAVAATALLDMYAKCGLVASAQRVFDEMPSRDDLVAWNALVA 124

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YAR    + A+ +  +M  Q L  ++    +V+       D     K+   +    F  
Sbjct: 125 CYARHALPERALVLAIKMRGQCLCPDLVTWNAVVSGFALAGDDQMATKLVGAMEVDGFQP 184

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAMNAMVSGY---------VQRGLA 261
           D    +SL+          +A+ +F  M+     ++  +A ++           V+RG  
Sbjct: 185 DVVTWTSLVSGSVLNFQYARARVLFRRMMTTANPVLPSSATIASILPAFANVADVKRGKE 244

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
             A  +V       V+  +   + L+  ++KSG  V   +LF  M     E   V+W S+
Sbjct: 245 VHAYAVVTG-----VEQELNVSSALVDMYTKSGFVVEARRLFDKMS----ERSTVTWNSM 295

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH-GCAIVMG 380
           I GL ++    EA   F  ML  G  P   T ++ L  C+ A  +  GK ++       G
Sbjct: 296 IFGLANSGHCQEAIGLFNRMLCDGARPDHLTFTAALTVCSYAGMVELGKGLYRAMQEEHG 355

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
           +E  L   + +V +  + G+++EA      M    +   W +++  C +HG
Sbjct: 356 IEPRLEHCACMVHLLGRAGWLAEAYDFIKAMPLGPDCFVWGALLGACRSHG 406



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVM--GVEGDLHVRSALVDMYAKCGFISEARTLF 408
           A + + L ACA   N   G+ IH   +     +  D    +AL+DMYAKCG ++ A+ +F
Sbjct: 48  AAVPTALRACARLGNASSGRLIHALVLTRFPSLASDAVAATALLDMYAKCGLVASAQRVF 107

Query: 409 DKMSERNT-VTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLV 466
           D+M  R+  V WN+++   A H   + A+ L  +M  +    D +++ AV++     G  
Sbjct: 108 DEMPSRDDLVAWNALVACYARHALPERALVLAIKMRGQCLCPDLVTWNAVVSGFALAGDD 167

Query: 467 ELGQRLFNMMQ 477
           ++  +L   M+
Sbjct: 168 QMATKLVGAME 178



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 57/109 (52%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +HA  +V+G+ +   +++ L+  YT+   +  AR LFD++ + +   W ++   
Sbjct: 239 VKRGKEVHAYAVVTGVEQELNVSSALVDMYTKSGFVVEARRLFDKMSERSTVTWNSMIFG 298

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
            A  G+ QEA+ +F+ M   G + +     + L  C +   +  G+ ++
Sbjct: 299 LANSGHCQEAIGLFNRMLCDGARPDHLTFTAALTVCSYAGMVELGKGLY 347


>gi|242041437|ref|XP_002468113.1| hypothetical protein SORBIDRAFT_01g039790 [Sorghum bicolor]
 gi|241921967|gb|EER95111.1| hypothetical protein SORBIDRAFT_01g039790 [Sorghum bicolor]
          Length = 459

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/422 (50%), Positives = 289/422 (68%), Gaps = 10/422 (2%)

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFV----IPSVLKACGHLSDIGTGEKIHSLVL-KHS 209
           +R+G H   + +F     +G +  + +    +P+ L+AC  L +  +G  IH+LV+ +  
Sbjct: 8   SRQGRHGRVLHLFFAHLRRGDRGLVDLHPAAVPTALRACARLGNASSGRLIHALVITRFP 67

Query: 210 FGTDAFVVSSLI-DMYSKCGSVEKAKKVFDEMVEKD-IVAMNAMVSGYVQRGLATEALNL 267
           F     V ++ + DMY+KCG V  A++VFDEM  KD +VA NA+V+ Y +  L   AL L
Sbjct: 68  FLAADAVAATALLDMYAKCGLVASAQRVFDEMPRKDDLVAWNALVACYARHALPDRALAL 127

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
             ++    ++P+++TWN +ISGF+ +GD  M  +L   M   G +PDVV+WTS++SG V 
Sbjct: 128 AIKMRGQCLRPDLMTWNAVISGFALAGDDQMAGELVGAMEEDGFQPDVVTWTSLVSGSVL 187

Query: 328 NFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           NF    A   F+ M++ G    P SATI SILPA A+ A+++RGKE+H  A+V GVE +L
Sbjct: 188 NFQYARARVLFRRMVTAGNPVLPCSATIVSILPAFANVADVKRGKEVHTYAVVTGVEQEL 247

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-E 444
            V SAL+DMY K GF+ EAR LFD+M+ER+TVTWNSMIFG AN G+C EAI LFN+M  +
Sbjct: 248 TVGSALLDMYTKSGFLLEARRLFDRMAERSTVTWNSMIFGLANSGHCQEAIGLFNRMLCD 307

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             + DHL+FTAVLTAC + G+VELG+ L+  MQE++ I PR EH ACMV LLGRAG LAE
Sbjct: 308 GARPDHLTFTAVLTACSYAGMVELGKSLYRDMQEEHGIEPRLEHCACMVHLLGRAGWLAE 367

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           AY+ IK M  EPD FVWGALLGAC++HG+I+LAE+AA HL  +EP +AA+ +LL+D  A 
Sbjct: 368 AYDFIKAMPLEPDCFVWGALLGACRSHGDIKLAELAASHLLTVEPANAASCLLLSDSLAG 427

Query: 565 AG 566
           AG
Sbjct: 428 AG 429



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 158/366 (43%), Gaps = 15/366 (4%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIV--SGLARLTQIATKLITFYTECQNIHHAR 133
           L PAA    +    R     SG+++HA +I     LA     AT L+  Y +C  +  A+
Sbjct: 34  LHPAAVPTALRACARLGNASSGRLIHALVITRFPFLAADAVAATALLDMYAKCGLVASAQ 93

Query: 134 MLFDEIP-KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
            +FDE+P K ++  W AL   YAR      A+ +  +M  Q L+ ++    +V+      
Sbjct: 94  RVFDEMPRKDDLVAWNALVACYARHALPDRALALAIKMRGQCLRPDLMTWNAVISGFALA 153

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--KDIVAMNA 250
            D     ++   + +  F  D    +SL+          +A+ +F  MV     ++  +A
Sbjct: 154 GDDQMAGELVGAMEEDGFQPDVVTWTSLVSGSVLNFQYARARVLFRRMVTAGNPVLPCSA 213

Query: 251 MVSGYVQRGLATEALNLVEEIGT----PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
            +   +        +   +E+ T      V+  +   + L+  ++KSG  +   +LF  M
Sbjct: 214 TIVSILPAFANVADVKRGKEVHTYAVVTGVEQELTVGSALLDMYTKSGFLLEARRLFDRM 273

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                E   V+W S+I GL ++    EA   F  ML  G  P   T +++L AC+ A  +
Sbjct: 274 ----AERSTVTWNSMIFGLANSGHCQEAIGLFNRMLCDGARPDHLTFTAVLTACSYAGMV 329

Query: 367 RRGKEIH-GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIF 424
             GK ++       G+E  L   + +V +  + G+++EA      M  E +   W +++ 
Sbjct: 330 ELGKSLYRDMQEEHGIEPRLEHCACMVHLLGRAGWLAEAYDFIKAMPLEPDCFVWGALLG 389

Query: 425 GCANHG 430
            C +HG
Sbjct: 390 ACRSHG 395



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 101/235 (42%), Gaps = 14/235 (5%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +H   +V+G+ +   + + L+  YT+   +  AR LFD + + +   W ++   
Sbjct: 228 VKRGKEVHTYAVVTGVEQELTVGSALLDMYTKSGFLLEARRLFDRMAERSTVTWNSMIFG 287

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFGT 212
            A  G+ QEA+ +F+ M   G + +     +VL AC +   +  G+ ++  +  +H    
Sbjct: 288 LANSGHCQEAIGLFNRMLCDGARPDHLTFTAVLTACSYAGMVELGKSLYRDMQEEHGIEP 347

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG------LATEAL 265
                + ++ +  + G + +A      M +E D     A++      G      LA   L
Sbjct: 348 RLEHCACMVHLLGRAGWLAEAYDFIKAMPLEPDCFVWGALLGACRSHGDIKLAELAASHL 407

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
             VE    P    + +  +  ++G  +  D   + +L +  R K +  D  SW S
Sbjct: 408 LTVE----PANAASCLLLSDSLAGAGRQDDVTKMKRLAKRRRMKKL--DGCSWLS 456


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 297/508 (58%), Gaps = 40/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ+G+ +H  +I  G      + T L + YT+C ++ +AR +FD +PK ++  W A+   
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y++ G   EA+ +F EM + G+K N   + SV+  C HL  +  G++IH   ++    +D
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESD 255

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             VV+ L++MY+KCG+V  A K+F+ M  +D+ + NA++ GY       EAL     +  
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQV 315

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
             +KPN +T                                    N L++ ++K G+   
Sbjct: 316 RGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNS 375

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             KLF+ M  K    +VV+W ++ISG   +    EA   F EM +QG  P S  I S+LP
Sbjct: 376 AYKLFERMPKK----NVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLP 431

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA    + +GK+IHG  I  G E ++ V + LVD+YAKCG ++ A+ LF++M E++ V+
Sbjct: 432 ACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVS 491

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W +MI     HG+ ++A+ LF++M+E   KLDH++FTA+LTAC H GLV+ G + F  M+
Sbjct: 492 WTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMK 551

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             Y + P+ EHYAC+VDLLGRAG L EA  +IK MS EPD  VWGALLGAC+ H NIEL 
Sbjct: 552 SDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELG 611

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANA 565
           E AAKHL EL+P++A   +LL+++YA A
Sbjct: 612 EQAAKHLFELDPDNAGYYVLLSNIYAEA 639



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/437 (32%), Positives = 225/437 (51%), Gaps = 50/437 (11%)

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           + N   W      Y + G+  +A+ ++++M   G+  +  V  SV+KACG  SD+  G K
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H  ++   F +D  V ++L  MY+KCGS+E A++VFD M ++D+V+ NA+++GY Q G 
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQ 201

Query: 261 ATEALNLVEEIGTPRVKPN-----------------------------------VVTWNT 285
             EAL L  E+    +KPN                                   V+  N 
Sbjct: 202 PYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNG 261

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           L++ ++K G+     KLF+ M  +    DV SW ++I G   N  + EA   F  M  +G
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIR----DVASWNAIIGGYSLNSQHHEALAFFNRMQVRG 317

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P S T+ S+LPACA    + +G++IHG AI  G E +  V +ALV+MYAKCG ++ A 
Sbjct: 318 IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAY 377

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVG 464
            LF++M ++N V WN++I G + HG+  EA+ LF +M+ +  K D  +  +VL AC H  
Sbjct: 378 KLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFL 437

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            +E G+++       Y I    E        +VD+  + G +  A ++ + M  E D+  
Sbjct: 438 ALEQGKQI-----HGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVS 491

Query: 521 WGALLGACKNHGNIELA 537
           W  ++ A   HG+ E A
Sbjct: 492 WTTMILAYGIHGHGEDA 508



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 186/386 (48%), Gaps = 45/386 (11%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H   I SG+     +   L+  Y +C N++ A  LF+ +P  ++  W A+ G
Sbjct: 236 ALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIG 295

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y+    H EA+  F+ M ++G+K N   + SVL AC HL  +  G++IH   ++  F +
Sbjct: 296 GYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFES 355

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++L++MY+KCG+V  A K+F+ M +K++VA NA++SGY Q G   EAL L  E+ 
Sbjct: 356 NDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQ 415

Query: 273 TPRVKP-----------------------------------NVVTWNTLISGFSKSGDQV 297
              +KP                                   NVV    L+  ++K G+  
Sbjct: 416 AQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVN 475

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              KLF+ M     E DVVSWT++I     +   ++A   F +M   G        ++IL
Sbjct: 476 TAQKLFERMP----EQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAIL 531

Query: 358 PACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            AC+ A  + +G +   C     G+   L   + LVD+  + G + EA  +   MS E +
Sbjct: 532 TACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPD 591

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQ 441
              W +++  C  H  C+  IEL  Q
Sbjct: 592 ANVWGALLGACRIH--CN--IELGEQ 613



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 114/222 (51%), Gaps = 11/222 (4%)

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           +  + V W   I G V N   ++A   + +M   G  P      S++ AC S ++++ G+
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           ++H   I  G E D+ V +AL  MY KCG +  AR +FD+M +R+ V+WN++I G + +G
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200

Query: 431 YCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
              EA+ LF++M+    K +  +  +V+  C H+  +E G+++       Y I    E  
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQI-----HCYAIRSGIESD 255

Query: 490 AC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
                 +V++  + G +  A+++ + M    D+  W A++G 
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGG 296


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 309/548 (56%), Gaps = 67/548 (12%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFD 137
           + Y   ++  +  ++L   K+LHA +I +    +   +  KL++ Y +  ++  AR +FD
Sbjct: 65  STYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFD 124

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
           E+P  N+  W A+  AYAR  + QEA+  F+EM   G++ N F   S+L AC  L  +G 
Sbjct: 125 EMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLG- 183

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
             + H  ++K  F ++ FV + L+DMY+K G +E A+++FD+M ++D+V+ NAM++GYVQ
Sbjct: 184 --EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQ 241

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-------------QVMVS---- 300
            GL  +AL L +EI     K +V+TWNT+++G+++ GD             Q +VS    
Sbjct: 242 NGLIEDALKLFQEI----PKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTM 297

Query: 301 --------------KLFQLMRAKGV---------------------------EPDVVSWT 319
                         KLFQ+M  + V                           E +VVSW 
Sbjct: 298 IAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWN 357

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++I+G   N   + A   F +M      P + T + +LPACA+ A + +G E H   I  
Sbjct: 358 AMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRS 417

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           G + D+ V + LV MYAKCG I +AR +FD+M ++++ + ++MI G A +G   E++ELF
Sbjct: 418 GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELF 477

Query: 440 NQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
            QM+    K D ++F  VL+ACCH GLV+ G++ F++M   Y I P  EHY CM+DLLGR
Sbjct: 478 EQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGR 537

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           AG   EA ++I  M  +PD  +WG+LL AC+ H NI+L E  A+HL  L P++ A  +LL
Sbjct: 538 AGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLL 597

Query: 559 TDLYANAG 566
           +++YA AG
Sbjct: 598 SNIYAAAG 605



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 153/297 (51%), Gaps = 5/297 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+ + +   +  A  LF  +P+ N+  W A+   Y++ G  + A+ +F +M +  +K N
Sbjct: 328 VISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPN 387

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
                 VL AC  L+ +  G + H +V++  F +D  V ++L+ MY+KCGS+E A+KVFD
Sbjct: 388 TETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFD 447

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M ++D  +++AM+ GY   G + E+L L E++    +KP+ VT+  ++S    +G    
Sbjct: 448 RMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDE 507

Query: 299 VSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             + F +M R   + P +  +  +I  L    C DEA D   +M  +   P +    S+L
Sbjct: 508 GRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIK---PDADMWGSLL 564

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
            AC +  N+  G+++    I +  +        L ++YA  G   +  ++ ++M +R
Sbjct: 565 SACRTHNNIDLGEKVAQHLIALNPQNPAPY-VLLSNIYAAAGRWDDIGSVRNRMKDR 620


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 311/562 (55%), Gaps = 51/562 (9%)

Query: 49  SDAGKPLINGIFI--EAHYKMPIISRSFHLSPAAYSERIEIYIRDRAL----------QS 96
           S +G+P +  I+I  E+H   P+   S  L+P   S     ++R  AL          ++
Sbjct: 57  SLSGQPKLQPIYIGLESH---PLKQSSHGLNPCGRSPTGGGHLRLTALRCLRENMRSCKT 113

Query: 97  GKILH---AQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            K +H   AQ+I +G      I  KL+T     + + +AR LFD+IP  NI  W ++   
Sbjct: 114 SKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRG 173

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+   ++E V +F +M    ++ N F  P VLK+CG ++ +  GE++H  ++K  F  +
Sbjct: 174 YAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGN 233

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++LIDMYS  G+V  A K+F EM E+++VA  +M++GY+       A  L + +  
Sbjct: 234 PFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFD-LAP 292

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV---------------------- 311
            R   +VV WN ++SG+ + GD V   KLF  M  + V                      
Sbjct: 293 ER---DVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGL 349

Query: 312 -----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPACASAAN 365
                E ++ SW ++I G  HN    E   +FK MLS+    P  AT+ ++L ACA    
Sbjct: 350 FEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGA 409

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GK +H  A   G++G+++V +AL+DMYAKCG I  A ++F  M  ++ ++WN++I G
Sbjct: 410 LDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGG 469

Query: 426 CANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A H    +A+ LF QM+   +K D ++F  +L AC H+GLVE G   F  M + Y IMP
Sbjct: 470 LAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMP 529

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           + EHY CMVD+L RAGRL +A   ++ M  E D  +W  LLGAC+ + N+ELAE+A + L
Sbjct: 530 QIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRL 589

Query: 545 SELEPESAANNMLLTDLYANAG 566
            ELEP++ AN ++L+++Y +AG
Sbjct: 590 IELEPKNPANYVMLSNIYGDAG 611


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/480 (38%), Positives = 274/480 (57%), Gaps = 45/480 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H+ +   GL     +A  LIT Y +C ++  AR +FD + K ++  W A+  
Sbjct: 273 ALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIA 332

Query: 153 AYARRGYHQ-----EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            YA+ GY       E   +   M  +G+  N     S+L+AC     +  G +IH+ + K
Sbjct: 333 GYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSK 392

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             F  D  + +++ +MY+KCGS+ +A++VF +M  K                        
Sbjct: 393 VGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK------------------------ 428

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                      NVV W + +S + K GD     K+F  M  +    +VVSW  +I+G   
Sbjct: 429 -----------NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTR----NVVSWNLMIAGYAQ 473

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N    + F+    M ++GF P   T+ +IL AC + A + RGK +H  A+ +G+E D  V
Sbjct: 474 NGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVV 533

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
            ++L+ MY+KCG ++EART+FDKMS R+TV WN+M+ G   HG   EA++LF +M +ER 
Sbjct: 534 ATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERV 593

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
             + ++ TAV++AC   GLV+ G+ +F MMQE +K+ PR +HY CMVDLLGRAGRL EA 
Sbjct: 594 SPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAE 653

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           E I++M  EPD+ VW ALLGACK+H N++LAE AA H+ ELEP  A+  + L+++YA AG
Sbjct: 654 EFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAG 713



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 153/585 (26%), Positives = 254/585 (43%), Gaps = 80/585 (13%)

Query: 36  SGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPII-SRSFHLSPAAYSERIEIYIRDRAL 94
           +G +L    S S  +  +    G   EA   + II  R   ++   Y   IE   + R  
Sbjct: 13  TGKELDGPTSVSGGEVWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRF 72

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + GK++H QL   G+     +   LI FY++ +++  A  +F  +   ++  W ++  AY
Sbjct: 73  EDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAY 132

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A   +  +A   F  M    ++ N     S+LKAC + S +  G KIH++V      TD 
Sbjct: 133 AGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDV 192

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            V ++LI MYSKCG +  A +VF +M E+++V+  A++    Q     EA  L E++   
Sbjct: 193 AVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQA 252

Query: 275 RVKPNVVTW-----------------------------------NTLISGFSKSGDQVMV 299
            + PN VT+                                   N LI+ + K       
Sbjct: 253 GISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEA 312

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN-----DEAFDTFKEMLSQGFCPTSATIS 354
            ++F  M  +    DV+SW+++I+G   +        DE F   + M  +G  P   T  
Sbjct: 313 REIFDRMSKR----DVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE- 413
           SIL AC +   + +G++IH     +G E D  +++A+ +MYAKCG I EA  +F KM+  
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK 428

Query: 414 ------------------------------RNTVTWNSMIFGCANHGYCDEAIELFNQME 443
                                         RN V+WN MI G A +G   +  EL + M+
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488

Query: 444 -ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
            E  + D ++   +L AC  +  +E G +L +    K  +   T     ++ +  + G++
Sbjct: 489 AEGFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQV 547

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGN-IELAEIAAKHLSE 546
           AEA  +   MS   D   W A+L     HG+ +E  ++  + L E
Sbjct: 548 AEARTVFDKMSNR-DTVAWNAMLAGYGQHGDGLEAVDLFKRMLKE 591



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 215/448 (47%), Gaps = 42/448 (9%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G  +EA+ +   +  +GL  N      V++ C        G+ +H  + +     D +
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + +SLI+ YSK   V  A++VF  M  +D+V  ++M++ Y       +A +  E +    
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--------------------- 314
           ++PN +T+ +++   +         K+  +++A G+E D                     
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVAC 212

Query: 315 ----------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
                     VVSWT++I     +   +EAF+ +++ML  G  P + T  S+L +C +  
Sbjct: 213 EVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPE 272

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            + RG+ IH      G+E D+ V +AL+ MY KC  + EAR +FD+MS+R+ ++W++MI 
Sbjct: 273 ALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIA 332

Query: 425 GCANHGYCD-EAIELFNQMEERKKLD-----HLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           G A  GY D E+I+   Q+ ER + +      ++F ++L AC   G +E G+++   + +
Sbjct: 333 GYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSK 392

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
               + R+   A + ++  + G + EA ++   M+ + ++  W + L      G++  AE
Sbjct: 393 VGFELDRSLQTA-IFNMYAKCGSIYEAEQVFSKMANK-NVVAWTSFLSMYIKCGDLSSAE 450

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
              K  SE+   +  +  L+   YA  G
Sbjct: 451 ---KVFSEMPTRNVVSWNLMIAGYAQNG 475



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 91  DRALQS---------GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIP 140
           DR+LQ+         G I  A+ + S +A    +A T  ++ Y +C ++  A  +F E+P
Sbjct: 398 DRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMP 457

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             N+  W  +   YA+ G   +   +   M  +G + +   + ++L+ACG L+ +  G+ 
Sbjct: 458 TRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKL 517

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H+  +K    +D  V +SLI MYSKCG V +A+ VFD+M  +D VA NAM++GY Q G 
Sbjct: 518 VHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGD 577

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
             EA++L + +   RV PN +T   +IS  S++G      ++F++M+
Sbjct: 578 GLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQ 624


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/467 (39%), Positives = 264/467 (56%), Gaps = 35/467 (7%)

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
           M   E  K N+  W A+ G +A+ GY +EA+ +   M   G + N   + SVL AC  L 
Sbjct: 1   MSCSENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQ 60

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC-------------------------- 227
           ++  G++IH  V +H F ++ FVV+ L+D+Y +C                          
Sbjct: 61  NLNLGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIV 120

Query: 228 -----GSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
                G+VEKAK++FD+M  V KD ++ N+M+SGY    L  E L   +       + + 
Sbjct: 121 GYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDT 180

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
            TWN LISG++       +  L Q M+  G EP+V +W  +ISG V N  N+ A   F E
Sbjct: 181 ATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTE 240

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M +    P   T+  ILPACA  A + RGK++H  +I  G E D+H+ +ALVDMYAKCG 
Sbjct: 241 MQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGS 300

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTA 459
           I  A  +++++S  N V+ N+M+   A HG+ DE I LF N +    + DH++F +VL++
Sbjct: 301 IKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSS 360

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C H G VE G   F++M   Y + P  +HY C+VDLL RAGRL EAYE++K +  +PD  
Sbjct: 361 CVHAGAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSV 419

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +WGALLG C   GN+EL EIAA+ L ELEP +  N +LL +LYA AG
Sbjct: 420 MWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAG 466



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 141/285 (49%), Gaps = 8/285 (2%)

Query: 91  DRALQSGKILHAQLIVSGLA-RLTQIATKLITFYTECQNIHHARMLFDEIP----KTNIH 145
           D  L+   +  AQL   G+  R T     LI+ Y  C  + + + L  ++     + N++
Sbjct: 157 DNLLKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVY 216

Query: 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            W  +   +   G+++ A+ +F EM    L+ +I+ +  +L AC  L+ I  G+++H+  
Sbjct: 217 TWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHS 276

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           ++  +  D  + ++L+DMY+KCGS++ A +V++ +   ++V+ NAM++ Y   G   E +
Sbjct: 277 IRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGI 336

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L   +     +P+ VT+ +++S    +G      + F LM    V P +  +T ++  L
Sbjct: 337 ALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLL 396

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
                 DEA++  K++  +   P S    ++L  C    N+  G+
Sbjct: 397 SRAGRLDEAYELVKKIPRK---PDSVMWGALLGGCVIWGNVELGE 438


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/496 (35%), Positives = 287/496 (57%), Gaps = 33/496 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           + AQ++  GL     +A   IT  +  + IHHAR LFD+IP+ N   W A+   Y + G+
Sbjct: 31  IQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGH 90

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           H++ V +F E++      N F  P ++K+CG L  +  GE++H    KH F +++FV +S
Sbjct: 91  HRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATS 150

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG-------------------- 259
           LIDMYSK G VE A KVF EM E+++V   A+++GY+  G                    
Sbjct: 151 LIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMW 210

Query: 260 -------LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
                  + ++ +    E+       + ++WN +++G++ +G+  M  K+F  M     E
Sbjct: 211 SVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMP----E 266

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPACASAANMRRGKE 371
            +V SW  +I G V N    E  ++FK ML +G   P   T+ ++L AC+    +  GK 
Sbjct: 267 RNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKW 326

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +H  A  +G +G+L V + L+DMYAKCG I  A  +F+ +  ++ ++WN++I G A HG+
Sbjct: 327 VHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGH 386

Query: 432 CDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             +A+ +F++M+ E ++ D ++F  +L+AC H+GLV+ G   F  M + Y I+P+ EHY 
Sbjct: 387 APDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYG 446

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMVDLLGRAG L +A   I+ M  EPD  +W ALLGAC+ + N+E+AE+A + L ELEP 
Sbjct: 447 CMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPN 506

Query: 551 SAANNMLLTDLYANAG 566
           + AN ++++++Y + G
Sbjct: 507 NPANFVMVSNIYKDLG 522



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/395 (20%), Positives = 167/395 (42%), Gaps = 48/395 (12%)

Query: 172 IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
           +Q + +  F+  ++L++C +   +    +I + ++ H    + FV  + I   S+   + 
Sbjct: 7   VQRIVEEKFI--TLLRSCKNYERL---HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIH 61

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291
            A+K+FD++ + +    NAM  GY+Q G   + + L  E+      PN  T+  +I    
Sbjct: 62  HARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCG 121

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           K        ++       G + +    TS+I       C ++A+  F EM  +     +A
Sbjct: 122 KLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTA 181

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
            I+  +  C    + RR          +  E D+ + S L+  Y +   ++ AR LFDKM
Sbjct: 182 IINGYI-LCGDVVSGRR-------LFDLAPERDVVMWSVLISGYIESKNMAAARELFDKM 233

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-------------------------K 446
             R+T++WN+M+ G A +G  +   ++F++M ER                         K
Sbjct: 234 PNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFK 293

Query: 447 KL--------DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           ++        +  +  AVL+AC  +G +++G +  ++  E             ++D+  +
Sbjct: 294 RMLVEGHVIPNDFTLVAVLSACSRLGALDMG-KWVHVYAESIGYKGNLFVGNVLIDMYAK 352

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            G +  A  +   +  + D+  W  ++     HG+
Sbjct: 353 CGVIENAVVVFNCLDRK-DIISWNTIINGLAIHGH 386



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S  N  R  +I    +  G+E +  V    +   ++   I  AR LFDK+ + NT TWN+
Sbjct: 21  SCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNA 80

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M  G   +G+  + + LF ++     + +  +F  ++ +C  +  V  G+ + +    K+
Sbjct: 81  MFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEV-HCCATKH 139

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
                +     ++D+  + G + +AY++   M  E ++ VW A++      G++    ++
Sbjct: 140 GFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMH-ERNVVVWTAIINGYILCGDV----VS 194

Query: 541 AKHLSELEPE 550
            + L +L PE
Sbjct: 195 GRRLFDLAPE 204


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 190/511 (37%), Positives = 280/511 (54%), Gaps = 71/511 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL  G+ LHA    SG    + +A+ L   Y +C  I  AR LFD +P  ++  W A+ 
Sbjct: 118 RALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMI 177

Query: 152 GAYAR-----------------------------------RGYHQEAVTVFHEMHIQGLK 176
             Y+R                                    G++ EAV +F  M +QG  
Sbjct: 178 AGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFW 237

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            +   +  VL A G L D+  G ++H  V+K   G+D FVVS+++DMY KCG V++  +V
Sbjct: 238 PDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRV 297

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FDE+ E +I ++NA ++G  + G+   AL +  +    +++ NVVTW ++I+  S++G  
Sbjct: 298 FDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKD 357

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           +   +LF+ M+A GVEP+ V                                   TI S+
Sbjct: 358 LEALELFRDMQAYGVEPNAV-----------------------------------TIPSL 382

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           +PAC + + +  GKEIH  ++  G+  D++V SAL+DMYAKCG I  AR  FDKMS  N 
Sbjct: 383 IPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNL 442

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN+++ G A HG   E +E+F+ M +  +K D ++FT VL+AC   GL E G R +N 
Sbjct: 443 VSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNS 502

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M E++ I P+ EHYAC+V LL R G+L EAY +IK M  EPD  VWGALL +C+ H N+ 
Sbjct: 503 MSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLS 562

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L EIAA+ L  LEP +  N +LL+++YA+ G
Sbjct: 563 LGEIAAEKLFFLEPTNPGNYILLSNIYASKG 593



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 224/463 (48%), Gaps = 45/463 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM---LFDEIPKTNIHRWIA 149
           +L   +  HA ++   L   TQ+ T L++FY    ++   ++   L   +P   +  + +
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L  A+AR  +    +T F  +H   L  + F++PS +K+C  L  +  G+++H+      
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASG 134

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F TD+ V SSL  MY KC  +  A+K+FD M ++D+V  +AM++GY + GL  EA  L  
Sbjct: 135 FLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG 194

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
           E+ +  V+PN+V+WN +++GF  +G       +F++M                       
Sbjct: 195 EMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM----------------------- 231

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
                       L QGF P  +T+S +LPA     ++  G ++HG  I  G+  D  V S
Sbjct: 232 ------------LVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVS 279

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           A++DMY KCG + E   +FD++ E    + N+ + G + +G  D A+E+FN+ +++K +L
Sbjct: 280 AMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMEL 339

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           + +++T+++ +C   G       LF  MQ  Y + P       ++   G    L    E 
Sbjct: 340 NVVTWTSIIASCSQNGKDLEALELFRDMQ-AYGVEPNAVTIPSLIPACGNISALMHGKE- 397

Query: 509 IKTMSTE----PDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           I   S       D++V  AL+      G I+LA      +S L
Sbjct: 398 IHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSAL 440


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 184/496 (37%), Positives = 283/496 (57%), Gaps = 33/496 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           + AQ+I +G      I  KL+T     + + +AR LFD+IP  NI  W ++   YA+   
Sbjct: 57  IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSES 116

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++E V +F +M    ++ N F  P VLK+CG ++ +  GE++H  ++K  F  + FV ++
Sbjct: 117 YREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTT 176

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LIDMYS  G+V  A K+F EM E+++VA  +M++GY+       A  L + +   R   +
Sbjct: 177 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFD-LAPER---D 232

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV---------------------------E 312
           VV WN ++SG+ + GD V   KLF  M  + V                           E
Sbjct: 233 VVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPE 292

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPACASAANMRRGKE 371
            ++ SW ++I G  HN    E   +FK MLS+    P  AT+ ++L ACA    +  GK 
Sbjct: 293 RNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKW 352

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +H  A   G++G+++V +AL+DMYAKCG I  A ++F  M  ++ ++WN++I G A H  
Sbjct: 353 VHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSR 412

Query: 432 CDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             +A+ LF QM+   +K D ++F  +L AC H+GLVE G   F  M + Y IMP+ EHY 
Sbjct: 413 GADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYG 472

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMVD+L RAGRL +A   ++ M  E D  +W  LLGAC+ + N+ELAE+A + L ELEP+
Sbjct: 473 CMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK 532

Query: 551 SAANNMLLTDLYANAG 566
           + AN ++L+++Y +AG
Sbjct: 533 NPANYVMLSNIYGDAG 548



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 159/381 (41%), Gaps = 46/381 (12%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L++C     +    +I + ++ + F  + ++   L+ + +    +  A+++FD++ + 
Sbjct: 43  SLLQSCKTSKQV---HQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDP 99

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------NTLISG---- 289
           +I   N+M  GY Q     E + L  ++    ++PN  T+          N LI G    
Sbjct: 100 NIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVH 159

Query: 290 -----FSKSGDQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCND 332
                    G+  + + L  +  A G             E +VV+WTS+I+G + +    
Sbjct: 160 CFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLV 219

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            A   F     +     +  +S  +         +   E+           D+   + ++
Sbjct: 220 SARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMP--------NRDVMFWNTVL 271

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDH 450
             YA  G +     LF++M ERN  +WN++I G A++G   E +  F +M  E     + 
Sbjct: 272 KGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPND 331

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +   VL+AC  +G ++LG+ + ++  E   +         ++D+  + G +  A  + +
Sbjct: 332 ATLVTVLSACARLGALDLGKWV-HVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFR 390

Query: 511 TMSTEPDLFVWGALLGACKNH 531
            M T+ DL  W  L+G    H
Sbjct: 391 GMDTK-DLISWNTLIGGLAMH 410



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 14/199 (7%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L +C ++  +    +I    I  G + + ++   LV + A    ++ AR LFD++ + 
Sbjct: 43  SLLQSCKTSKQVH---QIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDP 99

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV-GLVELGQRL 472
           N   WNSM  G A      E + LF QM+    + +  +F  VL +C  +  L+E  Q  
Sbjct: 100 NIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVH 159

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             +++  ++  P       ++D+    G + +AY++   M  E ++  W +++     +G
Sbjct: 160 CFLIKCGFRGNPFVG--TTLIDMYSAGGTVGDAYKIFCEM-FERNVVAWTSMI-----NG 211

Query: 533 NIELAE-IAAKHLSELEPE 550
            I  A+ ++A+ L +L PE
Sbjct: 212 YILSADLVSARRLFDLAPE 230


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 188/513 (36%), Positives = 287/513 (55%), Gaps = 40/513 (7%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R R+L+ G+ +HA ++ SG+     +   L++ Y +C ++  AR +FD I   NI  W A
Sbjct: 108 RLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTA 167

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +  A+     + EA   +  M + G K +     S+L A  +   +  G+K+H  + K  
Sbjct: 168 MIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAG 227

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +  V +SL+ MY+KCG + KA+ +FD++ EK++V    +++GY Q+G    AL L+E
Sbjct: 228 LELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLE 287

Query: 270 EIGTPRVKPNVVTW-----------------------------------NTLISGFSKSG 294
           ++    V PN +T+                                   N LI+ + K G
Sbjct: 288 KMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCG 347

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                 KLF  +  +    DVV+WT++++G      +DEA D F+ M  QG  P   T +
Sbjct: 348 GLKEARKLFGDLPHR----DVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFT 403

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S L +C+S A ++ GK IH   +  G   D++++SALV MYAKCG + +AR +F++MSER
Sbjct: 404 SALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSER 463

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           N V W +MI GCA HG C EA+E F QM+++  K D ++FT+VL+AC HVGLVE G++ F
Sbjct: 464 NVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHF 523

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M   Y I P  EHY+C VDLLGRAG L EA  +I TM  +P   VWGALL AC+ H +
Sbjct: 524 RSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSD 583

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +E  E AA+++ +L+P+     + L+++YA AG
Sbjct: 584 VERGERAAENVLKLDPDDDGAYVALSNIYAAAG 616



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 209/410 (50%), Gaps = 36/410 (8%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           ++G  +EA+ + + M +QG +    V   +L+ C  L  +  G ++H+ +LK     + +
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++L+ MY+KCGS+  A++VFD + +++IV+  AM+  +V      EA    E +    
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 276 VKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRAK 309
            KP+ VT+ +L++ F+     + G +V                     M +K   + +A+
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQ 252

Query: 310 GV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +     E +VV+WT +I+G       D A +  ++M      P   T +SIL  C +  
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPL 312

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            +  GK++H   I  G   ++ V +AL+ MY KCG + EAR LF  +  R+ VTW +M+ 
Sbjct: 313 ALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVT 372

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKI 482
           G A  G+ DEAI+LF +M+++  K D ++FT+ LT+C     ++ G+ +   ++   Y +
Sbjct: 373 GYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL 432

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
               +  + +V +  + G + +A  +   MS E ++  W A++  C  HG
Sbjct: 433 DVYLQ--SALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQHG 479



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 199/419 (47%), Gaps = 33/419 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G+ +H ++  +GL    ++ T L+  Y +C +I  A+++FD++P+ N+  W  L   
Sbjct: 213 LQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAG 272

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA++G    A+ +  +M    +  N     S+L+ C     +  G+K+H  +++  +G +
Sbjct: 273 YAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGRE 332

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +VV++LI MY KCG +++A+K+F ++  +D+V   AMV+GY Q G   EA++L   +  
Sbjct: 333 IWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQ 392

Query: 274 PRVKPNVVTWNTLISGFS--------KSGDQVMVSKLFQL----------MRAKG----- 310
             +KP+ +T+ + ++  S        KS  Q +V   + L          M AK      
Sbjct: 393 QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDD 452

Query: 311 --------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E +VV+WT++I+G   +    EA + F++M  QG  P   T +S+L AC  
Sbjct: 453 ARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTH 512

Query: 363 AANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
              +  G K      +  G++  +   S  VD+  + G + EA  +   M  +     W 
Sbjct: 513 VGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWG 572

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +++  C  H   +        + +    D  ++ A+       G  E  +++  +M+++
Sbjct: 573 ALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKR 631



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 170/326 (52%), Gaps = 5/326 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H  +I SG  R   +   LIT Y +C  +  AR LF ++P  ++  W A+  
Sbjct: 313 ALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVT 372

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G+H EA+ +F  M  QG+K +     S L +C   + +  G+ IH  ++   +  
Sbjct: 373 GYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL 432

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D ++ S+L+ MY+KCGS++ A+ VF++M E+++VA  AM++G  Q G   EAL   E++ 
Sbjct: 433 DVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMK 492

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
              +KP+ VT+ +++S  +  G      K F+ M    G++P V  ++  +  L      
Sbjct: 493 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 552

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA +    +L+  F P  +   ++L AC   +++ RG+      + +  + D     AL
Sbjct: 553 EEAENV---ILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDD-GAYVAL 608

Query: 392 VDMYAKCGFISEARTLFDKMSERNTV 417
            ++YA  G   +A  +   M +R+ V
Sbjct: 609 SNIYAAAGRYEDAEKVRQVMEKRDVV 634



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 112/223 (50%), Gaps = 13/223 (5%)

Query: 323 SGLVHNFCND----EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           SG V   C      EA      M+ QG    S     +L  CA   ++ +G+E+H   + 
Sbjct: 65  SGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILK 124

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAI 436
            G++ + ++ + L+ MYAKCG +++AR +FD + +RN V+W +MI  F   N     EA 
Sbjct: 125 SGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL--EAY 182

Query: 437 ELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL-FNMMQEKYKIMPRTEHYACMVD 494
           + +  M+    K D ++F ++L A  +  L+++GQ++   + +   ++ PR      +V 
Sbjct: 183 KCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVG 240

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +  + G +++A ++I     E ++  W  L+      G +++A
Sbjct: 241 MYAKCGDISKA-QVIFDKLPEKNVVTWTLLIAGYAQQGQVDVA 282


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 181/511 (35%), Positives = 280/511 (54%), Gaps = 41/511 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R++  G+ LH  ++ SG      +   L+ FY + Q +  AR +FDE+ + ++  W ++ 
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G  ++ ++VF +M + G++ ++  I SV   C     I  G  +HS+ +K  F 
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 328

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +    ++L+DMYSKCG ++ AK VF EM ++ +V+  +M++GY + GLA EA+ L EE+
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388

Query: 272 GTPRVKPNVVT----------------------W-------------NTLISGFSKSGDQ 296
               + P+V T                      W             N L+  ++K G  
Sbjct: 389 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 448

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISS 355
                +F  MR K    D++SW ++I G   N   +EA   F  +L +  F P   T++ 
Sbjct: 449 QEAELVFSEMRVK----DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 504

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +LPACAS +   +G+EIHG  +  G   D HV ++LVDMYAKCG +  A  LFD ++ ++
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 564

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+W  MI G   HG+  EAI LFNQM +   + D +SF ++L AC H GLV+ G R FN
Sbjct: 565 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 624

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
           +M+ + KI P  EHYAC+VD+L R G L +AY  I+ M   PD  +WGALL  C+ H ++
Sbjct: 625 IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDV 684

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           +LAE  A+ + ELEPE+    +L+ ++YA A
Sbjct: 685 KLAEKVAEKVFELEPENTGYYVLMANIYAEA 715



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/510 (26%), Positives = 242/510 (47%), Gaps = 45/510 (8%)

Query: 61  IEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLI 120
           +E   K+  +S  + + P      +++    ++L+ GK +   +  +G    + + +KL 
Sbjct: 77  LENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLS 136

Query: 121 TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF 180
             YT C ++  A  +FDE+       W  L    A+ G    ++ +F +M   G++ + +
Sbjct: 137 LMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSY 196

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
               V K+   L  +  GE++H  +LK  FG    V +SL+  Y K   V+ A+KVFDEM
Sbjct: 197 TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 256

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT------------------ 282
            E+D+++ N++++GYV  GLA + L++  ++    ++ ++ T                  
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGR 316

Query: 283 -----------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                             NTL+  +SK GD      +F+ M  +     VVS+TS+I+G 
Sbjct: 317 AVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS----VVSYTSMIAGY 372

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  EA   F+EM  +G  P   T++++L  CA    +  GK +H       +  D+
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDI 432

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
            V +AL+DMYAKCG + EA  +F +M  ++ ++WN++I G + + Y +EA+ LFN + E 
Sbjct: 433 FVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEE 492

Query: 446 KKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAGRL 502
           K+   D  +   VL AC  +   + G+ +   +        R  H A  +VD+  + G L
Sbjct: 493 KRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGAL 550

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             A+ +   ++++ DL  W  ++     HG
Sbjct: 551 LLAHMLFDDIASK-DLVSWTVMIAGYGMHG 579



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 133/258 (51%), Gaps = 12/258 (4%)

Query: 76  LSPAAYS--ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
           +SP  Y+    +    R R L  GK +H  +  + L     ++  L+  Y +C ++  A 
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF-----VIPSVLKA 188
           ++F E+   +I  W  + G Y++  Y  EA+++F+ +    L++  F      +  VL A
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL----LEEKRFSPDERTVACVLPA 508

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  LS    G +IH  ++++ + +D  V +SL+DMY+KCG++  A  +FD++  KD+V+ 
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
             M++GY   G   EA+ L  ++    ++ + +++ +L+   S SG      + F +MR 
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 628

Query: 309 K-GVEPDVVSWTSVISGL 325
           +  +EP V  +  ++  L
Sbjct: 629 ECKIEPTVEHYACIVDML 646


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/507 (36%), Positives = 290/507 (57%), Gaps = 36/507 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL + K +H  +   GL     +   LI+ Y++   +  AR +FD +   N   W ++  
Sbjct: 249 ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMIS 308

Query: 153 AYARRGYHQEAVTVFHE-----------------------------------MHIQGLKQ 177
           +YA  G+  +A ++F+E                                   M  +G K 
Sbjct: 309 SYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKP 368

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N   + SVL+A   L  +  G++ H  VL++ F  D +V +SLIDMY K  S+  A+ VF
Sbjct: 369 NSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVF 428

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           D M  ++I A N++VSGY  +G+  +AL L+ ++    +KP++VTWN +ISG++  G   
Sbjct: 429 DNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGK 488

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               +    ++ G+ P+VVSWT++ISG      N ++   F +M  +G  P SA+I+ +L
Sbjct: 489 EALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLL 548

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACAS + +++GKEIH  +I  G   D+ V +AL+DMY+K   +  A  +F ++  +   
Sbjct: 549 RACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLA 608

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WN MI G A  G   EAI +FN+M++     D ++FTA+L+AC + GL+  G + F+ M
Sbjct: 609 SWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSM 668

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
              Y+I+PR EHY CMVDLLGRAG L EA+++I TM  +PD  +WGALLG+C+ H N++ 
Sbjct: 669 ITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKF 728

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYA 563
           AE AAK+L +LEP ++AN +L+ +LY+
Sbjct: 729 AETAAKNLFKLEPNNSANYILMMNLYS 755



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 228/519 (43%), Gaps = 53/519 (10%)

Query: 19  LSMNDFYSIRRIYFALLSGTQLVLS--CSKSASDAGK-PLINGIFIEAHYKMPIISRSFH 75
           L   DF+S   +++  L    L  +    +  S AG   ++  +F E H K  +      
Sbjct: 77  LGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSE-- 134

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
                YS  ++   R   +  G  +H  LI  G      +   L+ FY  C  +  A  +
Sbjct: 135 ----VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 190

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           F E+P      W        +    Q+ V +F +M    LK     I  VL+ACG +  +
Sbjct: 191 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 250

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
              ++IH  V +    +D  + + LI MYSK G +E A++VFD M  ++  + N+M+S Y
Sbjct: 251 NAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSY 310

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
              G   +A +L  E+ +  +KP++VTWN L+SG    G +  V  + Q M+ +G +P+ 
Sbjct: 311 AALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPN- 369

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
                                             S++++S+L A +    +  GKE HG 
Sbjct: 370 ----------------------------------SSSMTSVLQAISELGFLNMGKETHGY 395

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
            +  G + D++V ++L+DMY K   ++ A+ +FD M  RN   WNS++ G +  G  ++A
Sbjct: 396 VLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDA 455

Query: 436 IELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE--KYKIMPRTEHYACM 492
           + L NQME E  K D +++  +++     G    G+    ++ +     + P    +  +
Sbjct: 456 LRLLNQMEKEGIKPDLVTWNGMISGYAMWG---CGKEALAVLHQTKSLGLTPNVVSWTAL 512

Query: 493 VDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGAC 528
           +    +AG   ++ +    M  E   P+      LL AC
Sbjct: 513 ISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRAC 551



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 23/252 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ GK +H   I +G      +AT LI  Y++  ++ +A  +F  I    +  W  +   
Sbjct: 557 LQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMG 616

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A  G  +EA++VF+EM   G+  +     ++L AC +   IG G K        S  TD
Sbjct: 617 FAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFD-----SMITD 671

Query: 214 AFVVSSL------IDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMV-SGYVQRGLA---T 262
             +V  L      +D+  + G +++A  +   M ++ D     A++ S  + + L    T
Sbjct: 672 YRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAET 731

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-DVVSWTSV 321
            A NL +    P    N +    L S F++  D   +  L +LM A GV    V SW   
Sbjct: 732 AAKNLFKL--EPNNSANYILMMNLYSIFNRWED---MDHLRELMGAAGVRNRQVWSWIQ- 785

Query: 322 ISGLVHNFCNDE 333
           I+  VH F +DE
Sbjct: 786 INQRVHVFSSDE 797


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 181/511 (35%), Positives = 280/511 (54%), Gaps = 41/511 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R++  G+ LH  ++ SG      +   L+ FY + Q +  AR +FDE+ + ++  W ++ 
Sbjct: 58  RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 117

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G  ++ ++VF +M + G++ ++  I SV   C     I  G  +HS+ +K  F 
Sbjct: 118 NGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 177

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +    ++L+DMYSKCG ++ AK VF EM ++ +V+  +M++GY + GLA EA+ L EE+
Sbjct: 178 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 237

Query: 272 GTPRVKPNVVT----------------------W-------------NTLISGFSKSGDQ 296
               + P+V T                      W             N L+  ++K G  
Sbjct: 238 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 297

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISS 355
                +F  MR K    D++SW ++I G   N   +EA   F  +L +  F P   T++ 
Sbjct: 298 QEAELVFSEMRVK----DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 353

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +LPACAS +   +G+EIHG  +  G   D HV ++LVDMYAKCG +  A  LFD ++ ++
Sbjct: 354 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 413

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+W  MI G   HG+  EAI LFNQM +   + D +SF ++L AC H GLV+ G R FN
Sbjct: 414 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 473

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
           +M+ + KI P  EHYAC+VD+L R G L +AY  I+ M   PD  +WGALL  C+ H ++
Sbjct: 474 IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDV 533

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           +LAE  A+ + ELEPE+    +L+ ++YA A
Sbjct: 534 KLAEKVAEKVFELEPENTGYYVLMANIYAEA 564



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 208/435 (47%), Gaps = 45/435 (10%)

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FDE+       W  L    A+ G    ++ +F +M   G++ + +    V K+   L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             GE++H  +LK  FG    V +SL+  Y K   V+ A+KVFDEM E+D+++ N++++GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVT--------------------------------- 282
           V  GLA + L++  ++    ++ ++ T                                 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 283 --WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
              NTL+  +SK GD      +F+ M  +     VVS+TS+I+G        EA   F+E
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGLAGEAVKLFEE 236

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M  +G  P   T++++L  CA    +  GK +H       +  D+ V +AL+DMYAKCG 
Sbjct: 237 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 296

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLT 458
           + EA  +F +M  ++ ++WN++I G + + Y +EA+ LFN + E K+   D  +   VL 
Sbjct: 297 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 356

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           AC  +   + G+ +   +        R  H A  +VD+  + G L  A+ +   ++++ D
Sbjct: 357 ACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLLAHMLFDDIASK-D 413

Query: 518 LFVWGALLGACKNHG 532
           L  W  ++     HG
Sbjct: 414 LVSWTVMIAGYGMHG 428



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 127/242 (52%), Gaps = 10/242 (4%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R R L  GK +H  +  + L     ++  L+  Y +C ++  A ++F E+   +I  W  
Sbjct: 258 RYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNT 317

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIF-----VIPSVLKACGHLSDIGTGEKIHSL 204
           + G Y++  Y  EA+++F+ +    L++  F      +  VL AC  LS    G +IH  
Sbjct: 318 IIGGYSKNCYANEALSLFNLL----LEEKRFSPDERTVACVLPACASLSAFDKGREIHGY 373

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           ++++ + +D  V +SL+DMY+KCG++  A  +FD++  KD+V+   M++GY   G   EA
Sbjct: 374 IMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEA 433

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVIS 323
           + L  ++    ++ + +++ +L+   S SG      + F +MR +  +EP V  +  ++ 
Sbjct: 434 IALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVD 493

Query: 324 GL 325
            L
Sbjct: 494 ML 495


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/476 (38%), Positives = 288/476 (60%), Gaps = 15/476 (3%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA L+V+G  +   I+T+L+  Y    ++  +R  FD+IP+ +++ W ++  AY   
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 95

Query: 158 GYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           G+  EA+  F+++  +  ++ + +  P VLKACG L D   G KIH    K  F  + FV
Sbjct: 96  GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFV 152

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MYS+ G    A+ +FD+M  +D+ + NAM+SG +Q G A +AL++++E+    +
Sbjct: 153 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 212

Query: 277 KPNVVTWNTLISGF----SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
           K N VT  +++  F    +K G      K+F+++  K    DV+SW ++I+G   N    
Sbjct: 213 KMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVK----DVISWNTLITGYAQNGLAS 268

Query: 333 EAFDTFKEMLS-QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           EA + +K M   +   P   T  SILPA A    +++G +IHG  I   +  D+ V + L
Sbjct: 269 EAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCL 328

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           +D+Y KCG + +A +LF ++ + ++VTWN++I     HG+ ++ ++LF +M +E  K DH
Sbjct: 329 IDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDH 388

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F ++L+AC H G VE G+  F +MQE Y I P  +HY CMVDLLGRAG L  AY+ IK
Sbjct: 389 VTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIK 447

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  +WGALLGAC+ HGNIEL + A+  L E++ ++    +LL+++YAN G
Sbjct: 448 DMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVG 503



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 149/372 (40%), Gaps = 68/372 (18%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H      G      +A  LI  Y+       AR LFD++P  ++  W A+   
Sbjct: 131 LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 190

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             + G   +A+ V  EM ++G+K N   + S+L                           
Sbjct: 191 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPV------------------------- 225

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL---NLVEE 270
                  +DMY+K G ++ A KVF+ +  KD+++ N +++GY Q GLA+EA+    ++EE
Sbjct: 226 ------FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 279

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV--------------- 315
                + PN  TW +++  ++  G      K+   +    +  DV               
Sbjct: 280 --CKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGR 337

Query: 316 ----------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                           V+W ++IS    +   ++    F EML +G  P   T  S+L A
Sbjct: 338 LVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSA 397

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
           C+ +  +  GK         G++  L     +VD+  + G++  A      M  + +   
Sbjct: 398 CSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASI 457

Query: 419 WNSMIFGCANHG 430
           W +++  C  HG
Sbjct: 458 WGALLGACRIHG 469



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 15/236 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  +H ++I + L     +AT LI  Y +C  +  A  LF ++P+ +   W A+  
Sbjct: 302 ALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 361

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   G+ ++ + +F EM  +G+K +     S+L AC H   +  G+    L+ ++    
Sbjct: 362 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKP 421

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM-----VSGYVQRG-LATEAL 265
                  ++D+  + G +E A     +M ++ D     A+     + G ++ G  A++ L
Sbjct: 422 SLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRL 481

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
             V+         NV  +  L + ++  G    V K+  L R +G++     W+++
Sbjct: 482 FEVDS-------KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK-KTPGWSTI 529


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 181/480 (37%), Positives = 272/480 (56%), Gaps = 45/480 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H+ +   GL     +A  LIT Y +C  I  AR  FD + K ++  W A+  
Sbjct: 295 ALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIA 354

Query: 153 AYARRGYHQ-----EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            YA+ GY       E   +   M  +G+  N     S+LKAC     +  G +IH+ + K
Sbjct: 355 GYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISK 414

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             F +D  + +++ +MY+KCGS+ +A++VF +M  K                        
Sbjct: 415 VGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK------------------------ 450

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                      NVV W +L++ + K GD     K+F  M  +    +VVSW  +I+G   
Sbjct: 451 -----------NVVAWASLLTMYIKCGDLTSAEKVFSEMSTR----NVVSWNLMIAGYAQ 495

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           +    + F+    M  +GF P   TI SIL AC + + + RGK +H  A+ +G+E D  V
Sbjct: 496 SGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVV 555

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
            ++L+ MY+KCG ++EART+FDK+S R+TV WN+M+ G   HG   EA++LF +M +ER 
Sbjct: 556 ATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERV 615

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
             + ++FTAV++AC   GLV+ G+ +F +MQE +++ P  +HY CMVDLLGRAGRL EA 
Sbjct: 616 PPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAE 675

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           E I+ M  EPD+ VW ALLGACK+H N++LAE AA H+  LEP +A+  + L+++YA AG
Sbjct: 676 EFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAG 735



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 149/584 (25%), Positives = 250/584 (42%), Gaps = 72/584 (12%)

Query: 36  SGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPII-SRSFHLSPAAYSERIEIYIRDRAL 94
           +G +L    S S  +  +    G   EA   + II  R   ++   Y   IE   + R  
Sbjct: 35  TGEELAGPRSVSGGEVWRLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRF 94

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + GK++H QL   GLA    +   LI FY++  ++     +F  +   ++  W ++  AY
Sbjct: 95  EDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAY 154

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A   +  +A   F  M    ++ N     S+LKAC + S +    +IH++V      TD 
Sbjct: 155 AGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDV 214

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            V ++LI MYSKCG +  A ++F +M E+++V+  A++    Q     EA  L E++   
Sbjct: 215 AVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQA 274

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV------------------ 316
            + PN VT+ +L++  +         ++   +  +G+E DVV                  
Sbjct: 275 GISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDA 334

Query: 317 -------------SWTSVISGLVHNFCN-----DEAFDTFKEMLSQGFCPTSATISSILP 358
                        SW+++I+G   +        DE F   + M  +G  P   T  SIL 
Sbjct: 335 RETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILK 394

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK-------- 410
           AC+    + +G++IH     +G E D  +++A+ +MYAKCG I EA  +F K        
Sbjct: 395 ACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVA 454

Query: 411 -----------------------MSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERK 446
                                  MS RN V+WN MI G A  G   +  EL + M+ E  
Sbjct: 455 WASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGF 514

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + D ++  ++L AC  +  +E G +L +    K  +   T     ++ +  + G + EA 
Sbjct: 515 QPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEAR 573

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHG-NIELAEIAAKHLSELEP 549
            +   +S   D   W A+L     HG   E  ++  + L E  P
Sbjct: 574 TVFDKISNR-DTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVP 616



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 91  DRALQS---------GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIP 140
           DR+LQ+         G I  A+ + S +     +A   L+T Y +C ++  A  +F E+ 
Sbjct: 420 DRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMS 479

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             N+  W  +   YA+ G   +   +   M ++G + +   I S+L+ACG LS +  G+ 
Sbjct: 480 TRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKL 539

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H+  +K    +D  V +SLI MYSKCG V +A+ VFD++  +D VA NAM++GY Q G+
Sbjct: 540 VHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGI 599

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
             EA++L + +   RV PN +T+  +IS   ++G      ++F++M+
Sbjct: 600 GPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQ 646



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 27/276 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK++HA+ +  GL   T +AT LI  Y++C  +  AR +FD+I   +   W A+  
Sbjct: 533 ALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLA 592

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF-- 210
            Y + G   EAV +F  M  + +  N     +V+ ACG    +  G +I   +++  F  
Sbjct: 593 GYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFR-IMQEDFRM 651

Query: 211 --GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNL 267
             G   +    ++D+  + G +++A++    M  E DI   +A++        + + + L
Sbjct: 652 KPGKQHY--GCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACK----SHDNVQL 705

Query: 268 VEEIG--TPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
            E       R++P N   + TL + ++++G     +K+ ++M  KG++ D    +  I G
Sbjct: 706 AEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDG 765

Query: 325 LVHNF----CNDEAFDTF--------KEMLSQGFCP 348
            +H F    C     D+         KEM   G+ P
Sbjct: 766 RIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTP 801


>gi|222624644|gb|EEE58776.1| hypothetical protein OsJ_10296 [Oryza sativa Japonica Group]
          Length = 419

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 185/430 (43%), Positives = 260/430 (60%), Gaps = 59/430 (13%)

Query: 147 WIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIF-----VIPSVLKACGHLSDIGTGEK 200
           W+    + +R+G+H + + +F   + +Q   +         +P+ L+AC HL+D+ +G  
Sbjct: 9   WMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHLADVASGRL 68

Query: 201 IHSLVL-KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           IH+LVL + +  +DA   ++L+DMYSKC                               G
Sbjct: 69  IHALVLTRPALASDAVAATALLDMYSKC-------------------------------G 97

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
           L   A  + +E+ +   + + V WN L++ +++ G       L   MR  G+ PD+    
Sbjct: 98  LVASARKVFDEMAS---RGDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLYG-- 152

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKEIHGCAI 377
                         A   F+ M+  G    P+SATIS+ILPA A+ A+++ GKE+HG ++
Sbjct: 153 -------------RARALFRAMMVAGGRVLPSSATISTILPAFANVADVKHGKEVHGYSV 199

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
           V GVE +L V SALVDMYAKCG + EAR LFDKM +R+TVTWNSMIFG AN G+C EA+ 
Sbjct: 200 VAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVG 259

Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF++M  +  K DHL+FTAVLTAC + G+VE+G+ L+  MQ +Y + PR EHYACMV LL
Sbjct: 260 LFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLL 319

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
           GRAGRL EAY  I+ M  EPD FVWGALLGAC++HGNIELAE+AA  L  +EP++AA+ +
Sbjct: 320 GRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHGNIELAELAASRLLAVEPDNAASCL 379

Query: 557 LLTDLYANAG 566
           LL+   ANAG
Sbjct: 380 LLSSALANAG 389



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 149/299 (49%), Gaps = 30/299 (10%)

Query: 94  LQSGKILHAQLIV-SGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALT 151
           + SG+++HA ++    LA     AT L+  Y++C  +  AR +FDE+  + +   W AL 
Sbjct: 63  VASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNALL 122

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIF----------------VIPS------VLKAC 189
             YAR G  + A+ +  +M   GL  +++                V+PS      +L A 
Sbjct: 123 ACYARHGLPEHALALAVKMRGIGLCPDLYGRARALFRAMMVAGGRVLPSSATISTILPAF 182

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
            +++D+  G+++H   +      +  V S+L+DMY+KCG V +A+++FD+M ++  V  N
Sbjct: 183 ANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWN 242

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK-LFQLMRA 308
           +M+ G    G   EA+ L + +     KP+ +T+  +++  S  G  V V K L++ M+ 
Sbjct: 243 SMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGG-MVEVGKILYRAMQV 301

Query: 309 K-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
           + GVEP +  +  ++  L      DEA+   + M  +   P      ++L AC S  N+
Sbjct: 302 EYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLE---PDRFVWGALLGACRSHGNI 357



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 16/235 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +H   +V+G+ +   +++ L+  Y +C  +  AR LFD++P+ +   W ++   
Sbjct: 188 VKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFG 247

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A  G+ QEAV +F  M   G K +     +VL AC +   +  G KI    ++  +G +
Sbjct: 248 LANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGGMVEVG-KILYRAMQVEYGVE 306

Query: 214 AFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNL-VE 269
             +   + ++ +  + G +++A      M +E D     A++      G      N+ + 
Sbjct: 307 PRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGALLGACRSHG------NIELA 360

Query: 270 EIGTPR---VKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-DVVSWT 319
           E+   R   V+P N  +   L S  + +G Q  V K+ +L++ + ++  D  SW 
Sbjct: 361 ELAASRLLAVEPDNAASCLLLSSALANAGKQDDVFKIKRLVKRRRLKKLDSYSWV 415



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFN-----QMEERKKLDHL--SFTAVLTACCHV 463
           M    T +W   +   +  G+  + + LF      Q   R  +D    +    L AC H+
Sbjct: 1   MCPAKTSSWMRQLTSSSRQGHHGDVLRLFFTGVRLQAGSRGTVDPWPGAVPTALRACAHL 60

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             V  G+ +  ++  +  +         ++D+  + G +A A ++   M++  D  VW A
Sbjct: 61  ADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASARKVFDEMASRGDPVVWNA 120

Query: 524 LLGACKNHGNIELA 537
           LL     HG  E A
Sbjct: 121 LLACYARHGLPEHA 134


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 181/511 (35%), Positives = 277/511 (54%), Gaps = 41/511 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R++  G+ LH  ++ SG      +   L+ FY +   +  AR +FDE+ + ++  W ++ 
Sbjct: 209 RSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSII 268

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G  ++ ++VF +M   G++ ++  I SV   C     I  G  +H   +K  F 
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFS 328

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +    ++L+DMYSKCG ++ AK VF EM  + +V+  +M++GY + GLA EA+ L EE+
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388

Query: 272 GTPRVKPNVVT----------------------W-------------NTLISGFSKSGDQ 296
               + P+V T                      W             N L+  ++K G  
Sbjct: 389 EEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSM 448

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISS 355
                +F  MR K    D++SW +VI G   N   +EA   F  +L  + F P   T++ 
Sbjct: 449 REAELVFSEMRVK----DIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVAC 504

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +LPACAS +   +G+EIHG  +  G   D HV ++LVDMYAKCG +  AR LFD ++ ++
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKD 564

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+W  MI G   HG+  EAI LFNQM +   + D +SF ++L AC H GLV+ G R FN
Sbjct: 565 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFN 624

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
           +M+ + KI P  EHYAC+VD+L R G L++AY  I+ M   PD  +WGALL  C+ H ++
Sbjct: 625 IMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDV 684

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           +LAE  A+ + ELEPE+    +L+ ++YA A
Sbjct: 685 KLAERVAEKVFELEPENTGYYVLMANIYAEA 715



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 237/505 (46%), Gaps = 45/505 (8%)

Query: 66  KMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTE 125
           K+  +S  + + P      +++    ++L+ GK +   +  +G    + + +KL   YT 
Sbjct: 82  KLLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTN 141

Query: 126 CQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           C ++  A  +FD++       W  L    A+ G    ++ +F +M   G++ + +    V
Sbjct: 142 CGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 201

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
            K+   L  +  GE++H  +LK  FG    V +SL+  Y K   V+ A+KVFDEM E+D+
Sbjct: 202 SKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDV 261

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT----------------------- 282
           ++ N++++GYV  GLA + L++  ++    ++ ++ T                       
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCF 321

Query: 283 ------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                        NTL+  +SK GD      +F+ M  +     VVS+TS+I+G      
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRS----VVSYTSMIAGYAREGL 377

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA   F+EM  +G  P   T++++L  CA    +  GK +H       +  D+ V +A
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNA 437

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKL 448
           L+DMYAKCG + EA  +F +M  ++ ++WN++I G + + Y +EA+ LFN +  E+R   
Sbjct: 438 LMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSP 497

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAGRLAEAYE 507
           D  +   VL AC  +   + G+ +   +        R  H A  +VD+  + G L  A  
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLLARL 555

Query: 508 MIKTMSTEPDLFVWGALLGACKNHG 532
           +   + T  DL  W  ++     HG
Sbjct: 556 LFDDI-TSKDLVSWTVMIAGYGMHG 579


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/496 (36%), Positives = 276/496 (55%), Gaps = 33/496 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           + AQ+I  G      +A  ++T +   + + HAR LFD  P   +  W A++  Y    +
Sbjct: 44  VQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAF 103

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++E V +F +M    ++ N F  P VLK+C  +     GE+IH  V+K     + FV ++
Sbjct: 104 YREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATT 163

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV---QRGLATEALNLVEE------ 270
           LID+YS   ++  A K+F  M+E++IVA  +M+SGY+   +  LA    +L  E      
Sbjct: 164 LIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLW 223

Query: 271 ---------IGTPRVKP---------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
                    IG  +            + ++WNT+++G++ +GD     +LF+ M     E
Sbjct: 224 NIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMP----E 279

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC-PTSATISSILPACASAANMRRGKE 371
            +V SW  +I G  HN C  E    FK ML  G   P  AT+ ++L ACA    +  GK 
Sbjct: 280 RNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKW 339

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +H  A  +G +G ++V +AL+DMY+KCG I  A  +F+ M  ++ +TWNSMI G A HG 
Sbjct: 340 VHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGC 399

Query: 432 CDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             +A+ LF+QM+   +K D ++F  VL +C H+GLVE G   FN M  +Y I P+ EHY 
Sbjct: 400 GADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYG 459

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMVDL GRAG L  A E +K M  E D  +W ALLGAC+ + NI+LAE+A + L  LEP+
Sbjct: 460 CMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPK 519

Query: 551 SAANNMLLTDLYANAG 566
           + AN +LL+++Y + G
Sbjct: 520 NPANYVLLSNIYGDLG 535



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 161/382 (42%), Gaps = 46/382 (12%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L++C     +   +K+ + ++ H F  + +V  +++  +     +  A+ +FD   + 
Sbjct: 30  SLLRSC---KTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDP 86

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
            +   NA+  GY       E + L  ++ +  V+PN  T+  ++   +K G  V   ++ 
Sbjct: 87  KVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIH 146

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             +   G+E +    T++I           A+  F  ML +     ++ IS  +  C   
Sbjct: 147 CEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI-LCNRV 205

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A  RR          +  E D+ + + +V  Y + G +  AR LFD M  R+T++WN+M+
Sbjct: 206 ALARR-------LFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTML 258

Query: 424 FGCANHGYCDEAIELFNQMEERKK---------------------------LDHL----- 451
            G AN+G  +   +LF +M ER                             +D L     
Sbjct: 259 NGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPND 318

Query: 452 -SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +   VL+AC  +G ++LG+ + ++                ++D+  + G +  A E+ +
Sbjct: 319 ATLVTVLSACARLGALDLGKWV-HVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFE 377

Query: 511 TMSTEPDLFVWGALLGACKNHG 532
           +M  + DL  W +++     HG
Sbjct: 378 SMDLK-DLITWNSMICGLATHG 398



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 9/226 (3%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  AL  GK +H      G      +   LI  Y++C  I +A  +F+ +   ++  W +
Sbjct: 330 RLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNS 389

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKH 208
           +    A  G   +A+T+FH+M I G K +      VL +C HL  +  G    +S+V ++
Sbjct: 390 MICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEY 449

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEA 264
           S          ++D++ + G +++A +    M +E D V   A++     Y    LA  A
Sbjct: 450 SIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELA 509

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
           L  +  +  P+   N V  + +     +  D   V++L  LMR  G
Sbjct: 510 LQKLIVL-EPKNPANYVLLSNIYGDLGRWKD---VARLKILMRDTG 551


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/496 (36%), Positives = 276/496 (55%), Gaps = 33/496 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           + AQ+I  G      +A  ++T +   + + HAR LFD  P   +  W A++  Y    +
Sbjct: 86  VQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAF 145

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++E V +F +M    ++ N F  P VLK+C  +     GE+IH  V+K     + FV ++
Sbjct: 146 YREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATT 205

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV---QRGLATEALNLVEE------ 270
           LID+YS   ++  A K+F  M+E++IVA  +M+SGY+   +  LA    +L  E      
Sbjct: 206 LIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLW 265

Query: 271 ---------IGTPRVKP---------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
                    IG  +            + ++WNT+++G++ +GD     +LF+ M     E
Sbjct: 266 NIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMP----E 321

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC-PTSATISSILPACASAANMRRGKE 371
            +V SW  +I G  HN C  E    FK ML  G   P  AT+ ++L ACA    +  GK 
Sbjct: 322 RNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKW 381

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +H  A  +G +G ++V +AL+DMY+KCG I  A  +F+ M  ++ +TWNSMI G A HG 
Sbjct: 382 VHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGC 441

Query: 432 CDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             +A+ LF+QM+   +K D ++F  VL +C H+GLVE G   FN M  +Y I P+ EHY 
Sbjct: 442 GADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYG 501

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMVDL GRAG L  A E +K M  E D  +W ALLGAC+ + NI+LAE+A + L  LEP+
Sbjct: 502 CMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPK 561

Query: 551 SAANNMLLTDLYANAG 566
           + AN +LL+++Y + G
Sbjct: 562 NPANYVLLSNIYGDLG 577



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 161/382 (42%), Gaps = 46/382 (12%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L++C  ++ +   +K+ + ++ H F  + +V  +++  +     +  A+ +FD   + 
Sbjct: 72  SLLRSCKTVALL---QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDP 128

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
            +   NA+  GY       E + L  ++ +  V+PN  T+  ++   +K G  V   ++ 
Sbjct: 129 KVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIH 188

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             +   G+E +    T++I           A+  F  ML +     ++ IS  +  C   
Sbjct: 189 CEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI-LCNRV 247

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A  RR          +  E D+ + + +V  Y + G +  AR LFD M  R+T++WN+M+
Sbjct: 248 ALARR-------LFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTML 300

Query: 424 FGCANHGYCDEAIELFNQMEERKKL---------------------------------DH 450
            G AN+G  +   +LF +M ER                                    + 
Sbjct: 301 NGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPND 360

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +   VL+AC  +G ++LG+ + ++                ++D+  + G +  A E+ +
Sbjct: 361 ATLVTVLSACARLGALDLGKWV-HVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFE 419

Query: 511 TMSTEPDLFVWGALLGACKNHG 532
           +M  + DL  W +++     HG
Sbjct: 420 SMDLK-DLITWNSMICGLATHG 440



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 9/226 (3%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  AL  GK +H      G      +   LI  Y++C  I +A  +F+ +   ++  W +
Sbjct: 372 RLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNS 431

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKH 208
           +    A  G   +A+T+FH+M I G K +      VL +C HL  +  G    +S+V ++
Sbjct: 432 MICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEY 491

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEA 264
           S          ++D++ + G +++A +    M +E D V   A++     Y    LA  A
Sbjct: 492 SIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELA 551

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
           L  +  +  P+   N V  + +     +  D   V++L  LMR  G
Sbjct: 552 LQKLIVL-EPKNPANYVLLSNIYGDLGRWKD---VARLKILMRDTG 593


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 181/472 (38%), Positives = 283/472 (59%), Gaps = 10/472 (2%)

Query: 97  GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G++  A  I  G+A    ++ + +I+       I  AR LFD++P  N+  W  +   Y 
Sbjct: 183 GRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYM 242

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +  + ++   +F  M  +G++ N   +  +L+ACG     G G +IH LVL   F  DA+
Sbjct: 243 KMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAY 302

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + +S+I MYS+C S++ A K FD MV+KDIV  N++++GYVQ G   +A+ L E +    
Sbjct: 303 LANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENMP--- 359

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
            + +VV+W TLI GF+  G       LFQ+M     E D ++WT+VISGLV     + AF
Sbjct: 360 -QKDVVSWTTLICGFASEGRIDEFIGLFQMMP----EKDAIAWTAVISGLVSIEEYEIAF 414

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F +ML     P + T+S +L A AS A + +G +IH     M +E DL ++++LV MY
Sbjct: 415 HWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMY 474

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFT 454
           +KCG + +A  +F  +   N V +N++I G A +G   EA+E+F +M++   + +H++F 
Sbjct: 475 SKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFL 534

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL+AC HVGLVE G+R F++M+  Y I P  +HYACMVDLL RAG   EA  ++ +M  
Sbjct: 535 GVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPF 594

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +P   VWGA+LGA   H  +++AE+AA++L ELEP SA   ++L++L++ +G
Sbjct: 595 DPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATPYVILSNLHSISG 646



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 182/391 (46%), Gaps = 57/391 (14%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++G I  A+ I + +     ++ T L+T Y E   I+ AR +F++IP  N+  + A+  A
Sbjct: 59  RNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITA 118

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y RR    EA  +F  M     ++N     +++    H       EK+H           
Sbjct: 119 YHRRNMVDEAFELFSSMP----QRNSVSYATMITGFVHAGMFDMAEKLHR--------EK 166

Query: 214 AFVVSS--LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             +VSS  LI+ YSK G VE A ++FD M EKD+V+ ++M+SG  + G   EA  L +++
Sbjct: 167 PVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKM 226

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  NVVTW  +I G+ K                                   NF  
Sbjct: 227 P----DRNVVTWTLMIDGYMK----------------------------------MNFLK 248

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           D  F  F  M  +G    + T++ +L AC S      G +IHG  + +G + D ++ +++
Sbjct: 249 D-GFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSI 307

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451
           + MY++C  I  A   FD M +++ VTWNS+I G    G  ++A+ LF  M ++   D +
Sbjct: 308 ITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQK---DVV 364

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           S+T ++      G ++    LF MM EK  I
Sbjct: 365 SWTTLICGFASEGRIDEFIGLFQMMPEKDAI 395



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 131/292 (44%), Gaps = 55/292 (18%)

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           +S I    + G +++A+ +F+ M  K+ V+  A+++ Y +       +N   E+      
Sbjct: 51  NSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAE----NSEINKAREVFNKIPD 106

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
           PNV ++N +I+ + +     MV + F+L  +   + + VS+ ++I+G VH    D A   
Sbjct: 107 PNVASYNAMITAYHRRN---MVDEAFELFSSMP-QRNSVSYATMITGFVHAGMFDMAEKL 162

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            +E                 P   S+                         + L++ Y+K
Sbjct: 163 HREK----------------PVIVSS-------------------------NVLINGYSK 181

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457
            G + +A  +FD M+E++ V+W+SMI G    G   EA +LF++M +R   + +++T ++
Sbjct: 182 VGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDR---NVVTWTLMI 238

Query: 458 TACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
                +  ++ G  LF NM +E  ++   T     +++  G   R  E  ++
Sbjct: 239 DGYMKMNFLKDGFILFLNMRREGVEVNATT--LTVLLEACGSFDRYGEGIQI 288



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  +HA +    +     I   L++ Y++C N+  A  +F  I   N+  +  +   
Sbjct: 445 LNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITG 504

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGT 212
            A+ G  +EA+ +F +M    L  N      VL AC H+  +  G +   L+   +    
Sbjct: 505 LAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQP 564

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           +    + ++D+  + G  ++A  +   M
Sbjct: 565 EPDHYACMVDLLCRAGMFDEAVSLVSSM 592


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 181/472 (38%), Positives = 283/472 (59%), Gaps = 10/472 (2%)

Query: 97  GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G++  A  I  G+A    ++ + +I+       I  AR LFD++P  N+  W  +   Y 
Sbjct: 191 GRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYM 250

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +  + ++   +F  M  +G++ N   +  +L+ACG     G G +IH LVL   F  DA+
Sbjct: 251 KMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAY 310

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + +S+I MYS+C S++ A K FD MV+KDIV  N++++GYVQ G   +A+ L E +    
Sbjct: 311 LANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENMP--- 367

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
            + +VV+W TLI GF+  G       LFQ+M     E D ++WT+VISGLV     + AF
Sbjct: 368 -QKDVVSWTTLICGFASEGRIDEFIGLFQMMP----EKDAIAWTAVISGLVSIEEYEIAF 422

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F +ML     P + T+S +L A AS A + +G +IH     M +E DL ++++LV MY
Sbjct: 423 HWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMY 482

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFT 454
           +KCG + +A  +F  +   N V +N++I G A +G   EA+E+F +M++   + +H++F 
Sbjct: 483 SKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFL 542

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL+AC HVGLVE G+R F++M+  Y I P  +HYACMVDLL RAG   EA  ++ +M  
Sbjct: 543 GVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPF 602

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +P   VWGA+LGA   H  +++AE+AA++L ELEP SA   ++L++L++ +G
Sbjct: 603 DPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATPYVILSNLHSISG 654



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 182/391 (46%), Gaps = 57/391 (14%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++G I  A+ I + +     ++ T L+T Y E   I+ AR +F++IP  N+  + A+  A
Sbjct: 67  RNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITA 126

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y RR    EA  +F  M     ++N     +++    H       EK+H           
Sbjct: 127 YHRRNMVDEAFELFSSMP----QRNSVSYATMITGFVHAGMFDMAEKLHR--------EK 174

Query: 214 AFVVSS--LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             +VSS  LI+ YSK G VE A ++FD M EKD+V+ ++M+SG  + G   EA  L +++
Sbjct: 175 PVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKM 234

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  NVVTW  +I G+ K                                   NF  
Sbjct: 235 P----DRNVVTWTLMIDGYMK----------------------------------MNFLK 256

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           D  F  F  M  +G    + T++ +L AC S      G +IHG  + +G + D ++ +++
Sbjct: 257 D-GFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSI 315

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451
           + MY++C  I  A   FD M +++ VTWNS+I G    G  ++A+ LF  M ++   D +
Sbjct: 316 ITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQK---DVV 372

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           S+T ++      G ++    LF MM EK  I
Sbjct: 373 SWTTLICGFASEGRIDEFIGLFQMMPEKDAI 403



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 131/292 (44%), Gaps = 55/292 (18%)

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           +S I    + G +++A+ +F+ M  K+ V+  A+++ Y +       +N   E+      
Sbjct: 59  NSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAE----NSEINKAREVFNKIPD 114

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
           PNV ++N +I+ + +     MV + F+L  +   + + VS+ ++I+G VH    D A   
Sbjct: 115 PNVASYNAMITAYHRRN---MVDEAFELFSSMP-QRNSVSYATMITGFVHAGMFDMAEKL 170

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            +E                 P   S+                         + L++ Y+K
Sbjct: 171 HREK----------------PVIVSS-------------------------NVLINGYSK 189

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457
            G + +A  +FD M+E++ V+W+SMI G    G   EA +LF++M +R   + +++T ++
Sbjct: 190 VGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDR---NVVTWTLMI 246

Query: 458 TACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
                +  ++ G  LF NM +E  ++   T     +++  G   R  E  ++
Sbjct: 247 DGYMKMNFLKDGFILFLNMRREGVEVNATT--LTVLLEACGSFDRYGEGIQI 296



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 8/253 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  +HA +    +     I   L++ Y++C N+  A  +F  I   N+  +  +   
Sbjct: 453 LNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITG 512

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGT 212
            A+ G  +EA+ +F +M    L  N      VL AC H+  +  G +   L+   +    
Sbjct: 513 LAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQP 572

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +    + ++D+  + G  ++A  +   M       +   V G     L  +   L  +  
Sbjct: 573 EPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQ-N 631

Query: 273 TPRVKPNVVTWNTLISGF-SKSGDQVMVSKLFQLM-RAKGVEPDV-VSWTSVISGLVHNF 329
              ++PN  T   ++S   S SGD+    +L +LM +++G++     SW  ++   VH F
Sbjct: 632 LFELEPNSATPYVILSNLHSISGDE-RKHELIRLMKKSRGLKKSPGCSWI-ILKDEVHLF 689

Query: 330 -CNDEAFDTFKEM 341
               ++    KEM
Sbjct: 690 HAGHQSIKNIKEM 702


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 168/482 (34%), Positives = 285/482 (59%), Gaps = 36/482 (7%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG------------------ 158
            +L+  Y +   +  A+ LFD++ K +I  W AL  AYA+ G                  
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 159 -YH------------QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            Y+            QE++ +F  M  +G +   + I S+L A   LSD+  G++IH  +
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSI 181

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +  +F  + F+ ++L DMY+KCG +E+A+ +FD + +K++V+ N M+SGY + G   + +
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L+ ++      P+ VT +T+I+ + + G      ++F   +    E D+V WT+++ G 
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFK----EKDIVCWTAMMVGY 297

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
             N   ++A   F EML +   P S T+SS++ +CA  A++  G+ +HG +I+ G+  +L
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEE 444
            V SAL+DMY+KCGFI +AR++F+ M  RN V+WN+MI GCA +G+  +A+ELF N +++
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
           + K D+++F  +L+AC H   +E GQ  F+ +  ++ + P  +HYACMV+LLGR GR+ +
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           A  +IK M+ +PD  +W  LL  C   G+I  AE+AA+HL EL+P  A   ++L+++YA+
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYAS 537

Query: 565 AG 566
            G
Sbjct: 538 MG 539



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 176/345 (51%), Gaps = 49/345 (14%)

Query: 189 CGHLSDIGTGEKIHSLVLKHSFG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           C   ++I   +++ S +  H F  TD+F+ + L+ +Y+K G +  A+ +FD+M+++DI +
Sbjct: 32  CVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFS 91

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            NA++S Y + G + + L    +    R   + V++NT I+GFS +       +LF+ M+
Sbjct: 92  WNALLSAYAKSG-SIQNLKATFDRMPFR---DSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            +G E                                   PT  TI SIL A A  +++R
Sbjct: 148 REGFE-----------------------------------PTEYTIVSILNASAQLSDLR 172

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            GK+IHG  IV    G++ + +AL DMYAKCG I +AR LFD ++++N V+WN MI G A
Sbjct: 173 YGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYA 232

Query: 428 NHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            +G  ++ I L +QM     + D ++ + ++ A C  G V+  +R+F+  +EK  +    
Sbjct: 233 KNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVC--- 289

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTM---STEPDLFVWGALLGAC 528
             +  M+    + GR  +A  +   M     EPD +   +++ +C
Sbjct: 290 --WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 157/374 (41%), Gaps = 76/374 (20%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H  +IV        I   L   Y +C  I  AR LFD + K N+  W  +   
Sbjct: 171 LRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISG 230

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G  ++ + + H+M +                 GH+ D  T                
Sbjct: 231 YAKNGQPEKCIGLLHQMRLS----------------GHMPDQVT---------------- 258

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
              +S++I  Y +CG V++A++VF E  EKDIV   AM+ GY + G   +AL L  E+  
Sbjct: 259 ---MSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLL 315

Query: 274 PRVKPNVVTWNTLISG-----------------------------------FSKSGDQVM 298
             ++P+  T ++++S                                    +SK G    
Sbjct: 316 EHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDD 375

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              +F LM  +    +VVSW ++I G   N  + +A + F+ ML Q F P + T   IL 
Sbjct: 376 ARSVFNLMPTR----NVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILS 431

Query: 359 ACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNT 416
           AC     + +G+E         G+   L   + +V++  + G I +A  L   M+ + + 
Sbjct: 432 ACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDF 491

Query: 417 VTWNSMIFGCANHG 430
           + W++++  C+  G
Sbjct: 492 LIWSTLLSICSTKG 505



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 134/297 (45%), Gaps = 21/297 (7%)

Query: 75  HLSPAAY--SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           H+ P +Y  S  +    +  +L  G+ +H + I++GL     +++ LI  Y++C  I  A
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R +F+ +P  N+  W A+    A+ G+ ++A+ +F  M  Q  K +      +L AC H 
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436

Query: 193 SDIGTG-EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNA 250
           + I  G E   S+  +H         + ++++  + G +E+A  +   M  + D +  + 
Sbjct: 437 NWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNV-VTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
           ++S    +G    A      +    + P + V +  L + ++  G    V+ +  LM++K
Sbjct: 497 LLSICSTKGDIVNAEVAARHLF--ELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSK 554

Query: 310 GVEPDV-VSWTSVISGLVHNFCND-----EAFDTFK-------EMLSQGFCPTSATI 353
            V+     SW   I   VH F ++     E+ D ++       ++  +GF P +  +
Sbjct: 555 NVKKFAGFSWIE-IDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLV 610


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/525 (34%), Positives = 295/525 (56%), Gaps = 33/525 (6%)

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM 134
           HLS + Y + +++ I    L+ G ++H+ +I +G      ++TKLI FY +     +AR 
Sbjct: 34  HLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARK 93

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +FD +P+ N+  W A    YA+ G++Q+A+ VF +M   G++ N F   SVL+AC  L  
Sbjct: 94  VFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRC 153

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G +IH  + K+ F  + FV S+L+D++SKCG++E A+ +F+ M E+D+V+ NA++ G
Sbjct: 154 LERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGG 213

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG---- 310
           Y  +    ++  +   +    V P+  T  +++   S++ + + V ++  ++   G    
Sbjct: 214 YAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSH 273

Query: 311 ---------------------------VEPDVVSWTSVISGLVHNFC-NDEAFDTFKEML 342
                                      ++ DV+S+T++++G       + EA D FK+M 
Sbjct: 274 IDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQ 333

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
                    T  ++L  CA  A++  G++IH  AI      D+   +ALVDMYAK G I 
Sbjct: 334 HIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIE 393

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACC 461
           +A   F +M E+N ++W S+I G   HGY  EAI L+ +ME E  K + ++F ++L AC 
Sbjct: 394 DATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACS 453

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
           H GL   G   FN M  KY I+PR EHY+CM+DL  R G+L EAY MI  M+ +P+  +W
Sbjct: 454 HSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLW 513

Query: 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GA+LGAC  +G++ L E+AA HL  ++PE++AN ++L  +YA +G
Sbjct: 514 GAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAASG 558


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 182/503 (36%), Positives = 282/503 (56%), Gaps = 42/503 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HAQ+I   L     +A KLI+ ++ C  ++ A  +F++I   N+H +  L  A+ + 
Sbjct: 40  KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
               +A   F +M   GL  + F  P +LKAC     + T + IH  V K+ F  D FV 
Sbjct: 100 SQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVP 159

Query: 218 SSLIDMYSKCG---------------------------------SVEKAKKVFDEMVEKD 244
           +SLID YSKCG                                  + +A+K+FDEM E+D
Sbjct: 160 NSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERD 219

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
            V+ N ++ GYV+ G  ++A NL E++     + NVV+W+T++SG+ K+GD  M   LF 
Sbjct: 220 AVSWNTILDGYVKAGEMSQAFNLFEKMP----ERNVVSWSTMVSGYCKTGDMEMARMLFD 275

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M  K    ++V+WT +ISG        EA   + +M + G  P   T+ SIL ACA + 
Sbjct: 276 KMPFK----NLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESG 331

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            +  GK++H     + ++  ++V +ALVDMYAKCG + +A ++F++MS R+ V+WN M+ 
Sbjct: 332 LLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQ 391

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A HG+ ++AI+LF++M++   K D ++  A+L AC H G V+ G   FN M+  + I+
Sbjct: 392 GLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIV 451

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P  EHY CM+DLLGR GRL EA+ ++++M  EP+  +WG LLGAC+ H  + LAE     
Sbjct: 452 PHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDR 511

Query: 544 LSELEPESAANNMLLTDLYANAG 566
           L  LE     N  +L++++A AG
Sbjct: 512 LITLEQSDPGNYSMLSNIFAAAG 534



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 165/381 (43%), Gaps = 48/381 (12%)

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
           +D    +++H+ ++K +   D +V   LI  +S C  +  A  VF+++ + ++   N ++
Sbjct: 34  TDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLI 93

Query: 253 SGYVQRGLATEALNLVEEIGT-----------------------PRVK------------ 277
             +VQ   + +A     ++                         P V+            
Sbjct: 94  RAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFF 153

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
            ++   N+LI  +SK G  + V+   +L    G E D+VSW S+I GLV       A   
Sbjct: 154 GDLFVPNSLIDSYSKCG-LLGVNYAMKLFMEMG-EKDLVSWNSMIGGLVKAGDLGRARKL 211

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F EM  +     + + ++IL     A  M +   +         E ++   S +V  Y K
Sbjct: 212 FDEMAER----DAVSWNTILDGYVKAGEMSQAFNL----FEKMPERNVVSWSTMVSGYCK 263

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAV 456
            G +  AR LFDKM  +N VTW  +I G A  G   EA  L+NQME    K D  +  ++
Sbjct: 264 TGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISI 323

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L AC   GL+ LG+++   ++ K +I         +VD+  + GR+ +A  +   MS   
Sbjct: 324 LAACAESGLLVLGKKVHASIK-KIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMR- 381

Query: 517 DLFVWGALLGACKNHGNIELA 537
           DL  W  +L     HG+ E A
Sbjct: 382 DLVSWNCMLQGLAMHGHGEKA 402



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 101/236 (42%), Gaps = 5/236 (2%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +HA +    +     ++  L+  Y +C  +  A  +F+E+   ++  W  +    A 
Sbjct: 336 GKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAM 395

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGTDAF 215
            G+ ++A+ +F +M  +G K +   + ++L AC H   +  G    +S+   H       
Sbjct: 396 HGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIE 455

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               +ID+  + G +E+A ++   M     D++    + +  V   +      L   I  
Sbjct: 456 HYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITL 515

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            +  P    ++ L + F+ +GD   V+ +   M++ GV+    + +  +   VH F
Sbjct: 516 EQSDPG--NYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEF 569


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 178/471 (37%), Positives = 277/471 (58%), Gaps = 13/471 (2%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           +HA +I + L     +  KL+     C    ++ +AR +FDEIP  +   W  +  AY  
Sbjct: 22  IHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLN 81

Query: 157 RGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
               QE++++F +M H + +  + + +  V++ACG L D G G+K+H+ VLK   G+D F
Sbjct: 82  SQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLF 141

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LI+MY+K G +E A+ + DEM   D+V  N +++ YV+ G     +NL  ++    
Sbjct: 142 VETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVG----EINLAHDLFDRM 197

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
            + ++V+WNT+I G +  GD     KLF     +  E D++SW+S+I+       ++EA 
Sbjct: 198 PERDLVSWNTMIHGHASLGDVGTAKKLFD----RTCERDLISWSSMIAAYAKARQSNEAL 253

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F EM      P   T+ S+L AC     +  GK IH C     +E DL + ++LVDMY
Sbjct: 254 RLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMY 313

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           AKCG I  +  +F+ M+ R+   W++MI G ANHG+ + A++ F++M  E  K + ++F 
Sbjct: 314 AKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFI 373

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL+AC H+GLV+ G   F  M + Y + P+ EHY C+VD+LGRAGRL EA E+IK+M  
Sbjct: 374 GVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPF 433

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            PD  VW ALLGAC+ + N+E+AE A  +L ELEP    N +LL+++Y+ A
Sbjct: 434 APDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQA 484



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 165/364 (45%), Gaps = 24/364 (6%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK---AKKVFDEMVEKDIVAMNAMVSGYV 256
           +IH+L++K S   + FV++ L+     C S      A+ VFDE+   D    N M+  Y+
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 257 QRGLATEALNLVEEIGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
                 E+++L  ++      P +  + + +I    +  D     KL   +   G+  D+
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 140

Query: 316 VSWTSVISGLVHNFCNDE-AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
              T++I  +   F + E A +   EM      P +  ++  +          R  EI+ 
Sbjct: 141 FVETALIE-MYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYV----------RVGEINL 189

Query: 375 CAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
              +     E DL   + ++  +A  G +  A+ LFD+  ER+ ++W+SMI   A     
Sbjct: 190 AHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQS 249

Query: 433 DEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           +EA+ LF++M+    L D ++  +VL+AC  VG + +G+ +   + E+ +I    +    
Sbjct: 250 NEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECI-ERNRIEIDLKLGTS 308

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           +VD+  + G +  +  +   M+   D+F W A++    NHG     E+A  H S++  E 
Sbjct: 309 LVDMYAKCGDIDNSLRVFNGMNNR-DVFAWSAMIMGLANHG---FGELALDHFSKMISED 364

Query: 552 AANN 555
              N
Sbjct: 365 IKPN 368



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 150/337 (44%), Gaps = 18/337 (5%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G+ LH Q++  GL     + T LI  Y +  +I  AR + DE+   ++  +  L   Y 
Sbjct: 123 NGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYV 182

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           R G     + + H++  +  ++++    +++     L D+GT +K+       +   D  
Sbjct: 183 RVG----EINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKL----FDRTCERDLI 234

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             SS+I  Y+K     +A ++F EM    V  D V M +++S     G       + E I
Sbjct: 235 SWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECI 294

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
              R++ ++    +L+  ++K GD     ++F  M  +    DV +W+++I GL ++   
Sbjct: 295 ERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNR----DVFAWSAMIMGLANHGFG 350

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSA 390
           + A D F +M+S+   P   T   +L AC+    +  G       + V  V   +     
Sbjct: 351 ELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGC 410

Query: 391 LVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGC 426
           +VD+  + G + EA  L   M    + + W +++  C
Sbjct: 411 VVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGAC 447


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/502 (36%), Positives = 275/502 (54%), Gaps = 32/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH  ++ SGL   + +A  L+  Y +C ++  AR LFD +PKT++  W  +   Y +
Sbjct: 267 GSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQ 326

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  EA  +FHEM    +K +     S L      + +  G++IH  ++++    D F+
Sbjct: 327 NGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFL 386

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+LID+Y KC  VE A+K+FD+    DIV   AM+SGYV  G+   AL +   +   R+
Sbjct: 387 KSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 446

Query: 277 KPNVVTWNTLISGFSK------------------SGDQVMVSKLFQLMRAK--------- 309
           + N VT  +++   +                    G    V      M AK         
Sbjct: 447 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 506

Query: 310 ---GV-EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
              G+ + D V W S+I+    N   +EA D F++M   G      +IS+ L ACA+   
Sbjct: 507 TFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 566

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GKEIH   +      DL   SAL+DMY+KCG +  A  +FD M E+N V+WNS+I  
Sbjct: 567 LHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAA 626

Query: 426 CANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
             NHG   +++ LF+ M  +  + DH++F A+++AC H G V+ G   F  M E+  IM 
Sbjct: 627 YGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMA 686

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           R EHYACMVDL GRAGRL EA+ MI +M   PD  VWG LLGAC+ HGN+ELAE+A+++L
Sbjct: 687 RMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNL 746

Query: 545 SELEPESAANNMLLTDLYANAG 566
            +L+P+++   +LL++++ANAG
Sbjct: 747 FDLDPQNSGYYVLLSNVHANAG 768



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 227/486 (46%), Gaps = 52/486 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  G+  HAQ++V+G+     + TKL+  Y  C     A+ +F ++       W  +  
Sbjct: 61  GLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIR 120

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   G    A+  + +M   G   + +  P V+KACG L+ +  G  +H  +    F  
Sbjct: 121 GFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFEL 180

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV SSLI  YS+ G +  A+ +FD M  KD V  N M++GYV+ G    A  +  E+ 
Sbjct: 181 DVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMR 240

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
                PN VT+                                   NTL++ ++K G   
Sbjct: 241 RTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLF 300

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              +LF +M     + D+V+W  +ISG V N   DEA   F EM+S    P S T SS L
Sbjct: 301 DARRLFDMMP----KTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFL 356

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P  +  A +R+GKEIH   I  GV  D+ ++SAL+D+Y KC  +  AR +FD+ +  + V
Sbjct: 357 PLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIV 416

Query: 418 TWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
              +MI G   +G  + A+E+F   ++ER + + ++  +VL AC  +  + LG+ L    
Sbjct: 417 VCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHG-- 474

Query: 477 QEKYKIMPRTEHYACMV-----DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
                I+      +C V     D+  + GRL  A++    +S + D   W +++ +C  +
Sbjct: 475 ----HILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITSCSQN 529

Query: 532 GNIELA 537
           G  E A
Sbjct: 530 GKPEEA 535



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 181/399 (45%), Gaps = 41/399 (10%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           +IS         +S  + +      L+ GK +H  +I +G++    + + LI  Y +C++
Sbjct: 340 MISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRD 399

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +  AR +FD+    +I    A+   Y   G +  A+ +F  +  + ++ N   + SVL A
Sbjct: 400 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 459

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  L+ +  G+++H  +LK+  G   +V S+++DMY+KCG ++ A + F  + +KD V  
Sbjct: 460 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCW 519

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------- 283
           N+M++   Q G   EA++L  ++G    K + V+                          
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 579

Query: 284 ----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                     + LI  +SK G+  +  ++F  M     E + VSW S+I+   ++    +
Sbjct: 580 GAFRSDLFAESALIDMYSKCGNLDLACRVFDTME----EKNEVSWNSIIAAYGNHGRLKD 635

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI-VMGVEGDLHVRSALV 392
           + + F  ML  G  P   T  +I+ AC  A  +  G     C    +G+   +   + +V
Sbjct: 636 SLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMV 695

Query: 393 DMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
           D++ + G ++EA  + + M    +   W +++  C  HG
Sbjct: 696 DLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHG 734



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 142/310 (45%), Gaps = 40/310 (12%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L+ C   S +  G + H+ +L +  G +  + + L+ MY  CG+   AK +F ++   
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLW 110

Query: 244 DIVAMNAMVSGYVQRGLATEAL----------NLVEEIGTPRV----------------- 276
                N M+ G+   G    AL           L ++   P V                 
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 277 --------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                   + +V   ++LI  +S++G       LF  M +K    D V W  +++G V N
Sbjct: 171 DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK----DGVLWNVMLNGYVKN 226

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
              D A   F EM      P S T + +L  CAS   +  G ++HG  +  G+E D  V 
Sbjct: 227 GDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVA 286

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           + L+ MYAKCG + +AR LFD M + + VTWN MI G   +G+ DEA  LF++M   R K
Sbjct: 287 NTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMK 346

Query: 448 LDHLSFTAVL 457
            D ++F++ L
Sbjct: 347 PDSITFSSFL 356



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 139/278 (50%), Gaps = 10/278 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK LH  ++ +G      + + ++  Y +C  +  A   F  I   +   W ++  
Sbjct: 465 ALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMIT 524

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           + ++ G  +EA+ +F +M + G K +   I + L AC +L  +  G++IH+ +++ +F +
Sbjct: 525 SCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRS 584

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  S+LIDMYSKCG+++ A +VFD M EK+ V+ N++++ Y   G   ++LNL   + 
Sbjct: 585 DLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGML 644

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN- 331
              ++P+ VT+  +IS    +G    V +     R    E  +++     + +V  F   
Sbjct: 645 GDGIQPDHVTFLAIISACGHAGQ---VDEGIHYFRCMTEELGIMARMEHYACMVDLFGRA 701

Query: 332 ---DEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
              +EAF     M    F P +    ++L AC    N+
Sbjct: 702 GRLNEAFGMINSM---PFSPDAGVWGTLLGACRLHGNV 736



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 14/299 (4%)

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
           + +G    A  LV  IG      N +    L+  +   G  +    +F  +R    EP  
Sbjct: 62  LSQGRQAHAQMLVNGIGY-----NGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEP-- 114

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
             W  +I G       D A   + +ML  G  P   T   ++ AC    ++  G+ +H  
Sbjct: 115 --WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDK 172

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
              MG E D+ V S+L+  Y++ G I +AR LFD+M  ++ V WN M+ G   +G  D A
Sbjct: 173 IQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNA 232

Query: 436 IELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
             +F +M   +   + ++F  VL+ C    ++  G +L  ++      M  +     ++ 
Sbjct: 233 TGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD-SPVANTLLA 291

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPES 551
           +  + G L +A  +   M  + DL  W  ++     +G ++ A      +  + ++P+S
Sbjct: 292 MYAKCGHLFDARRLFDMMP-KTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDS 349



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 1/124 (0%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           SIL  C   + + +G++ H   +V G+  +  + + L+ MY  CG   +A+ +F ++   
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLW 110

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
            +  WN MI G    G  D A+  + +M     L D  +F  V+ AC  +  V LG+ + 
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 474 NMMQ 477
           + +Q
Sbjct: 171 DKIQ 174


>gi|224057531|ref|XP_002299253.1| predicted protein [Populus trichocarpa]
 gi|222846511|gb|EEE84058.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 181/506 (35%), Positives = 291/506 (57%), Gaps = 14/506 (2%)

Query: 69  IISRS-FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLA-RLTQIATKLITFYTEC 126
           ++SRS   L P A    ++  ++ + L+ GK +HA L+  G   R+  + +KL+  Y  C
Sbjct: 16  LVSRSNISLDPIA--GLLKQCLKFKTLRGGKQVHAWLVTRGTDLRILSLNSKLVGMYASC 73

Query: 127 QNIHHARMLFDEIPKTNIH--RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
            ++  A ++F  I   N+    W+ L  A+   GY++EA+  F  M       N +    
Sbjct: 74  GDVKSATLVFKRIRNPNVFALNWMVLASAF--EGYYKEAIGYFCSMKDSVFIYNKYTFSI 131

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VLKA   L D+  G+++HS+V +  F +D  V ++L+DMYSKCG +  A+ VFD M ++D
Sbjct: 132 VLKAFVGLLDLNKGKEVHSMVKQLGFESDVCVANALVDMYSKCGCIGYARTVFDRMAKRD 191

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           IV+  +M+SGY   G   EAL L E +    ++PN  TWN LISG+++ GD      L  
Sbjct: 192 IVSWTSMISGYCNVGKIEEALVLFERMKLEGLEPNDFTWNALISGYARRGDSDGAFSLLS 251

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M  +G+ PD+V+W ++I+G V      +AF  F++ML  G  P   T++ +LPAC   +
Sbjct: 252 KMTREGLVPDLVTWNAMIAGFVQGERAGDAFKLFQDMLVLGVKPNLVTVAGLLPACGMVS 311

Query: 365 NMRRGKEIHGCAIVMGVEGDLH---VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           +++RG+ IHG  +V  +E D+    + SAL+DMY++CG   EART+F+K+  +N  +WN+
Sbjct: 312 SIQRGRAIHG--LVYRLEFDISNAFIASALIDMYSECGSFKEARTVFEKIHNKNVASWNA 369

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI     HG  + +I+LF +M  E  + + ++   VL+AC H G VE G  +F  M+E+Y
Sbjct: 370 MIGCYGKHGMVNTSIQLFERMHGEGIQANDVTLLCVLSACSHSGYVEKGLEIFWSMKERY 429

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            +  + EHYAC+VD+L R+GRL +AYE++K M  E    + GA    C  HG  +LAE  
Sbjct: 430 MVDRKKEHYACVVDMLSRSGRLVDAYELVKEMPIEVTKSIAGAFFNGCMIHGRRDLAEKM 489

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
              ++  + +   +  +L+ +YA +G
Sbjct: 490 IDDVTRGDLKKPGSFAMLSAIYATSG 515


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 188/509 (36%), Positives = 287/509 (56%), Gaps = 41/509 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+ +HAQL   GL+     AT L   Y +C+    AR +FD +P  +   W AL   
Sbjct: 241 LATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAG 300

Query: 154 YARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YAR G  + AV +   M  + G + +   + SVL AC     +G   ++H+  ++  F  
Sbjct: 301 YARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDE 360

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE--- 269
              V ++++D+Y KCG+V+ A+KVFD M +++ V+ NAM+ GY + G ATEAL L +   
Sbjct: 361 QVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMV 420

Query: 270 -------------------EIG----TPRV---------KPNVVTWNTLISGFSKSGDQV 297
                              E+G      RV         + NV   N LI+ + K     
Sbjct: 421 GEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTD 480

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           + +++F  +  K      VSW ++I G   N  +++A   F  M  +   P S T+ SI+
Sbjct: 481 LAAQVFDELGYK----TRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSII 536

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           PA A  ++  + + IHG +I + ++ D++V +AL+DMYAKCG +S AR+LF+   +R+ +
Sbjct: 537 PALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVI 596

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TWN+MI G  +HG    A+ELF +M+   K+ +  +F +VL+AC H GLV+ GQ  F+ M
Sbjct: 597 TWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSM 656

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +E Y + P  EHY  MVDLLGRAG+L EA+  I+ M  EP + V+GA+LGACK H N+EL
Sbjct: 657 KEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVEL 716

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANA 565
           AE +A+ + ELEPE    ++LL ++YANA
Sbjct: 717 AEESAQRIFELEPEEGVYHVLLANIYANA 745



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 191/398 (47%), Gaps = 57/398 (14%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+LK C   +D+ TG  +H+ +       +A   ++L +MY+KC     A++VFD M  +
Sbjct: 230 SLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPAR 289

Query: 244 DIVAMNAMVSGYVQRGLATEALNLV----EEIGTPRVKPNVVTWNTL------------- 286
           D VA NA+V+GY + GLA  A+ +V    EE G    +P+ VT  ++             
Sbjct: 290 DRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGE---RPDAVTLVSVLPACADAQALGAC 346

Query: 287 --ISGFSKSG---DQVMVS-----------------KLFQLMRAKGVEPDVVSWTSVISG 324
             +  F+  G   +QV VS                 K+F  M+ +    + VSW ++I G
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDR----NSVSWNAMIKG 402

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
              N    EA   FK M+ +G   T  ++ + L AC     +  G+ +H   + +G+E +
Sbjct: 403 YAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESN 462

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME- 443
           ++V +AL+ MY KC     A  +FD++  +  V+WN+MI GC  +G  ++A+ LF++M+ 
Sbjct: 463 VNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQL 522

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRA 499
           E  K D  +  +++ A     L ++   L       Y I    +        ++D+  + 
Sbjct: 523 ENVKPDSFTLVSIIPA-----LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKC 577

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           GR++ A  +  + + +  +  W A++    +HG+ ++A
Sbjct: 578 GRVSIARSLFNS-ARDRHVITWNAMIHGYGSHGSGKVA 614



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 170/391 (43%), Gaps = 45/391 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL + + +HA  +  G      ++T ++  Y +C  +  AR +FD +   N   W A+ 
Sbjct: 341 QALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMI 400

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA  G   EA+ +F  M  +G+      + + L ACG L  +  G ++H L+++    
Sbjct: 401 KGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLE 460

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V+++LI MY KC   + A +VFDE+  K  V+ NAM+ G  Q G + +A+ L   +
Sbjct: 461 SNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRM 520

Query: 272 GTPRVKPNVVT------------------W-----------------NTLISGFSKSGDQ 296
               VKP+  T                  W                   LI  ++K G  
Sbjct: 521 QLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 580

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
            +   LF   R +     V++W ++I G   +     A + F+EM S G  P   T  S+
Sbjct: 581 SIARSLFNSARDR----HVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSV 636

Query: 357 LPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           L AC+ A  +  G+E         G+E  +     +VD+  + G + EA +   KM  E 
Sbjct: 637 LSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEP 696

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
               + +M+  C  H    + +EL  +  +R
Sbjct: 697 GISVYGAMLGACKLH----KNVELAEESAQR 723



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 155/332 (46%), Gaps = 10/332 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H  L+  GL     +   LIT Y +C+    A  +FDE+       W A+   
Sbjct: 444 LDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILG 503

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             + G  ++AV +F  M ++ +K + F + S++ A   +SD      IH   ++     D
Sbjct: 504 CTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQD 563

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V+++LIDMY+KCG V  A+ +F+   ++ ++  NAM+ GY   G    A+ L EE+ +
Sbjct: 564 VYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKS 623

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCND 332
               PN  T+ +++S  S +G      + F  M+   G+EP +  + +++  L       
Sbjct: 624 SGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLH 683

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSAL 391
           EA+   ++M  +   P  +   ++L AC    N+   +E       +   EG  HV   L
Sbjct: 684 EAWSFIQKMPME---PGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHV--LL 738

Query: 392 VDMYAKCGF---ISEARTLFDKMSERNTVTWN 420
            ++YA       ++  RT  +K   + T  W+
Sbjct: 739 ANIYANASLWKDVARVRTAMEKKGLQKTPGWS 770



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 49/260 (18%)

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           + G  P   T +S+L  CA+ A++  G+ +H      G+  +    +AL +MYAKC    
Sbjct: 218 ASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPG 277

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTAC 460
           +AR +FD+M  R+ V WN+++ G A +G  + A+ +  +M+E   ++ D ++  +VL AC
Sbjct: 278 DARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPAC 337

Query: 461 -----------------------------------CHVGLVELGQRLFNMMQEKYKIMPR 485
                                              C  G V+  +++F+ MQ++  +   
Sbjct: 338 ADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSV--- 394

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTE----PDLFVWGALLGACKNHGNIELAEIAA 541
              +  M+      G   EA  + K M  E     D+ V  A L AC   G ++      
Sbjct: 395 --SWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAA-LHACGELGFLDEGRRVH 451

Query: 542 KHLSELEPESAAN--NMLLT 559
           + L  +  ES  N  N L+T
Sbjct: 452 ELLVRIGLESNVNVMNALIT 471


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 286/514 (55%), Gaps = 41/514 (7%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R R+L+ G+ +HA ++ SG+     +   L++ Y +C ++  AR +FD I   NI  W A
Sbjct: 59  RLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTA 118

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +  A+     + EA   +  M + G K +     S+L A  +   +  G+K+H  +++  
Sbjct: 119 MIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAG 178

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +  V +SL+ MY+KCG + KA+ +FD + EK++V    +++GY Q+G    AL L+E
Sbjct: 179 LELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLE 238

Query: 270 EIGTPRVKPNVVTW-----------------------------------NTLISGFSKSG 294
            +    V PN +T+                                   N+LI+ + K G
Sbjct: 239 TMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCG 298

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                 KLF  +  +    DVV+WT++++G      +DEA + F+ M  QG  P   T +
Sbjct: 299 GLEEARKLFSDLPHR----DVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFT 354

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L +C+S A ++ GK IH   +  G   D++++SALV MYAKCG + +A  +F++MSER
Sbjct: 355 SVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSER 414

Query: 415 NTVTWNSMIFGC-ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           N V W ++I GC A HG C EA+E F+QM+++  K D ++FT+VL+AC HVGLVE G++ 
Sbjct: 415 NVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKH 474

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F  M   Y I P  EHY+C VDLLGRAG L EA  +I +M   P   VWGALL AC+ H 
Sbjct: 475 FRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHS 534

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++E  E AA+++ +L+P+     + L+ +YA AG
Sbjct: 535 DVERGERAAENVLKLDPDDDGAYVALSSIYAAAG 568



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 209/411 (50%), Gaps = 37/411 (9%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G  +EA+ + + M +QG +    V   +L+ C  L  +  G ++H+ +LK     + +
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++L+ MY+KCGS+  A++VFD + +++IV+  AM+  +V      EA    E +    
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 276 VKPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAK 309
            KP+ VT+ +L++ F+       G +V                     M +K   + +A+
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 310 GV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +     E +VV+WT +I+G       D A +  + M      P   T +SIL  C + A
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPA 263

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            +  GK++H   I  G   +L V ++L+ MY KCG + EAR LF  +  R+ VTW +M+ 
Sbjct: 264 ALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVT 323

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKI 482
           G A  G+ DEAI LF +M+++  K D ++FT+VLT+C     ++ G+R+   ++   Y +
Sbjct: 324 GYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL 383

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHG 532
               +  + +V +  + G + +A  +   MS E ++  W A++ G C  HG
Sbjct: 384 DVYLQ--SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCCAQHG 431



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 197/425 (46%), Gaps = 44/425 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G+ +H +++ +GL    ++ T L+  Y +C +I  AR++FD +P+ N+  W  L   
Sbjct: 164 LQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAG 223

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA++G    A+ +   M    +  N     S+L+ C   + +  G+K+H  +++  +G +
Sbjct: 224 YAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRE 283

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +VV+SLI MY KCG +E+A+K+F ++  +D+V   AMV+GY Q G   EA+NL   +  
Sbjct: 284 LWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ 343

Query: 274 PRVKPNVVTWNT-----------------------------------LISGFSKSGDQVM 298
             +KP+ +T+ +                                   L+S ++K G    
Sbjct: 344 QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDD 403

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLV--HNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
            S +F  M     E +VV+WT++I+G    H  C  EA + F +M  QG  P   T +S+
Sbjct: 404 ASLVFNQMS----ERNVVAWTAIITGCCAQHGRCR-EALEYFDQMKKQGIKPDKVTFTSV 458

Query: 357 LPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           L AC     +  G K      +  G++  +   S  VD+  + G + EA  +   M    
Sbjct: 459 LSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIP 518

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
               W +++  C  H   +        + +    D  ++ A+ +     G  E  +++  
Sbjct: 519 GPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQ 578

Query: 475 MMQEK 479
           +M+++
Sbjct: 579 VMEKR 583



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA      M+ QG    S     +L  CA   ++ +G+E+H   +  G++ + ++ + L+
Sbjct: 30  EALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 89

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
            MYAKCG +++AR +FD + +RN V+W +MI          EA + +  M+    K D +
Sbjct: 90  SMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKV 149

Query: 452 SFTAVLTACCHVGLVELGQRL-FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           +F ++L A  +  L++LGQ++   +++   ++ PR      +V +  + G +++A  +  
Sbjct: 150 TFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDISKARVIFD 207

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELA 537
            +  E ++  W  L+      G +++A
Sbjct: 208 RLP-EKNVVTWTLLIAGYAQQGQVDVA 233


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 175/532 (32%), Positives = 310/532 (58%), Gaps = 21/532 (3%)

Query: 38  TQLVLSCSKSAS-DAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQS 96
           TQLVL C ++   +  K L +   +E H   P  + SF      +++ + +Y +      
Sbjct: 26  TQLVLECVRTNEINQAKRLQS--HMEHHLFQP--TDSF-----LHNQLLHLYAK-----F 71

Query: 97  GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           GK+  AQ +   + +    +   L++ Y +  +I + +  FD +P  +   +      ++
Sbjct: 72  GKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFS 131

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                QE++ +F  M  +G +   + I S+L A   L D+  G++IH  ++  +F  + F
Sbjct: 132 GNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVF 191

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++L DMY+KCG +E+A+ +FD + +K++V+ N M+SGY + G   + + L+ ++    
Sbjct: 192 IWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSG 251

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
             P+ VT +T+I+ + + G      ++F   +    E D+V WT+++ G   N   ++A 
Sbjct: 252 HMPDQVTMSTIIAAYCQCGRVDEARRVFSEFK----EKDIVCWTAMMVGYAKNGREEDAL 307

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F EML +   P S T+SS++ +CA  A++  G+ +HG +I+ G+  +L V SAL+DMY
Sbjct: 308 LLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFT 454
           +KCGFI +AR++F+ M  RN V+WN+MI GCA +G+  +A+ELF N ++++ K D+++F 
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L+AC H   +E GQ  F+ +  ++ + P  +HYACMV+LLGR GR+ +A  +IK M+ 
Sbjct: 428 GILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +PD  +W  LL  C   G+I  AE+AA+HL EL+P  A   ++L+++YA+ G
Sbjct: 488 DPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMG 539



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 134/297 (45%), Gaps = 21/297 (7%)

Query: 75  HLSPAAY--SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           H+ P +Y  S  +    +  +L  G+ +H + I++GL     +++ LI  Y++C  I  A
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R +F+ +P  N+  W A+    A+ G+ ++A+ +F  M  Q  K +      +L AC H 
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC 436

Query: 193 SDIGTG-EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNA 250
           + I  G E   S+  +H         + ++++  + G +E+A  +   M  + D +  + 
Sbjct: 437 NWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWST 496

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNV-VTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
           ++S    +G    A      +    + P + V +  L + ++  G    V+ +  LM++K
Sbjct: 497 LLSICSTKGDIVNAEVAARHLF--ELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSK 554

Query: 310 GVEPDV-VSWTSVISGLVHNFCND-----EAFDTFK-------EMLSQGFCPTSATI 353
            V+     SW   I   VH F ++     E+ D ++       ++  +GF P +  +
Sbjct: 555 NVKKFAGFSWIE-IDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLV 610


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 180/509 (35%), Positives = 271/509 (53%), Gaps = 39/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H   +   +     +AT L+  Y +C     A+ LF  +   ++  W A+  A
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             + GY +EA+++F EM  Q +K N   + S+L AC  LS +  G+ IH   +K    +D
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               ++L+ MY+KCG    A   F+ M  +DIV  N++++GY Q G    A+++  ++  
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
             + P+  T                                    N LI  ++K G    
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              LF          D V+W  +I+  + N    EA  +F +M  + F P S T  S+LP
Sbjct: 585 AEFLFN---KTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  A  R G   H C I MG   +  V ++L+DMYAKCG +  +  LF++M  ++TV+
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS 701

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+M+ G A HG+ D AI LF+ M+E + ++D +SF +VL+AC H GLVE G+++F+ M 
Sbjct: 702 WNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMS 761

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +KY I P  EHYACMVDLLGRAG   E    IK M  EPD  VWGALLG+C+ H N++L 
Sbjct: 762 DKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLG 821

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E+A  HL +LEP + A+ ++L+ +YA +G
Sbjct: 822 EVALDHLVKLEPRNPAHFVVLSSIYAQSG 850



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 233/491 (47%), Gaps = 44/491 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G   H ++   GL R   I   L+  Y++  ++  AR +FD++PK ++  W A+   
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            ++     EAV  F  M + G++ +   + ++      LS+I     IH  V +  F + 
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA 264

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG- 272
             V + LID+YSKCG V+ A++VFD+MV++D V+   M++GY   G   E L L +++  
Sbjct: 265 --VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 273 ----------------------------------TPRVKPNVVTWNTLISGFSKSGDQVM 298
                                               R+  +++    L+  ++K G+   
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEK 382

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             +LF  ++ +    D+V+W+++I+ LV     +EA   F+EM +Q   P   T+ SILP
Sbjct: 383 AKQLFWGLQGR----DLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILP 438

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA  + ++ GK IH   +   ++ DL   +ALV MYAKCGF + A T F++MS R+ VT
Sbjct: 439 ACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVT 498

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I G A  G    AI++F ++       D  +   V+ AC  +  ++ G  +  ++ 
Sbjct: 499 WNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV 558

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            K            ++D+  + G L  A  +        D   W  ++ A   +G+ + A
Sbjct: 559 -KLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA 617

Query: 538 EIAAKHLSELE 548
            I++ H   LE
Sbjct: 618 -ISSFHQMRLE 627



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 226/468 (48%), Gaps = 41/468 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HAQ+IVSG      I T LI  Y+       AR +FD  P  +   W ++  AY R   
Sbjct: 51  IHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           + EA+ +++ M  +GL+ + +    VLKAC    ++  G   H  + +     D F+ + 
Sbjct: 110 YNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAG 169

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+DMYSK G +++A++VFD+M ++D+VA NAM++G  Q     EA++    +    V+P+
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 280 VVTW---------------------------------NTLISGFSKSGDQVMVSKLFQLM 306
            V+                                  N LI  +SK GD  +  ++F  M
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM 289

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
               V+ D VSW ++++G  HN C  E  + F +M          +  S   A A   ++
Sbjct: 290 ----VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDL 345

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
            +GKEIHGCA+   ++ D+ V + L+ MYAKCG   +A+ LF  +  R+ V W+++I   
Sbjct: 346 EKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAAL 405

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
              GY +EA+ LF +M+ +K K + ++  ++L AC  + L++LG+ + +    K  +   
Sbjct: 406 VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI-HCFTVKADMDSD 464

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
                 +V +  + G    A      MS+  D+  W +L+      G+
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLINGYAQIGD 511



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 228/480 (47%), Gaps = 45/480 (9%)

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
           + ++  LI  Y++C ++  AR +FD++   +   W  +   YA  G   E + +F +M +
Sbjct: 263 SAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
             ++ N     S   A     D+  G++IH   L+    +D  V + L+ MY+KCG  EK
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEK 382

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------- 283
           AK++F  +  +D+VA +A+++  VQ G   EAL+L +E+   ++KPN VT          
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442

Query: 284 --------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                                       L+S ++K G        F  M ++    D+V+
Sbjct: 443 LSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR----DIVT 498

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W S+I+G         A D F ++      P + T+  ++PACA   ++ +G  IHG  +
Sbjct: 499 WNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV 558

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAI 436
            +G E D HV++AL+DMYAKCG +  A  LF+K    ++ VTWN +I     +G+  EAI
Sbjct: 559 KLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAI 618

Query: 437 ELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
             F+QM  E    + ++F +VL A  ++     G   F+    +   +  T     ++D+
Sbjct: 619 SSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDM 677

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLG--ACKNHGNIELAEIAAKHLSELEPESAA 553
             + G+L  + ++   M  + D   W A+L   A   HG+  +A  +    S+++ +S +
Sbjct: 678 YAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 736



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P  + W S+I     +   +EA + +  M+ +G  P   T + +L AC  A N++ G   
Sbjct: 92  PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           HG     G+E D+ + + LVDMY+K G +  AR +FDKM +R+ V WN+MI G +     
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDP 211

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            EA++ F  M+    +   +S   +    C +  +EL + +   +   ++    +     
Sbjct: 212 CEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYV---FRRDFSSAVSNG 268

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN-IELAEIAAK 542
           ++DL  + G +  A  +   M  + D+  WG ++    ++G  +E+ E+  K
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDV-SWGTMMAGYAHNGCFVEVLELFDK 319



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + G   HA +I  G    T +   LI  Y +C  + ++  LF+E+   +   W A+  
Sbjct: 648 AFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLS 707

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
            YA  G+   A+ +F  M    ++ +     SVL AC H   +  G KI HS+  K+   
Sbjct: 708 GYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 767

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
            D    + ++D+  + G       +FDE
Sbjct: 768 PDLEHYACMVDLLGRAG-------LFDE 788


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 180/509 (35%), Positives = 271/509 (53%), Gaps = 39/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H   +   +     +AT L+  Y +C     A+ LF  +   ++  W A+  A
Sbjct: 345 LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             + GY +EA+++F EM  Q +K N   + S+L AC  LS +  G+ IH   +K    +D
Sbjct: 405 LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               ++L+ MY+KCG    A   F+ M  +DIV  N++++GY Q G    A+++  ++  
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
             + P+  T                                    N LI  ++K G    
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              LF          D V+W  +I+  + N    EA  +F +M  + F P S T  S+LP
Sbjct: 585 AEFLFN---KTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  A  R G   H C I MG   +  V ++L+DMYAKCG +  +  LF++M  ++TV+
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVS 701

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+M+ G A HG+ D AI LF+ M+E + ++D +SF +VL+AC H GLVE G+++F+ M 
Sbjct: 702 WNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMS 761

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +KY I P  EHYACMVDLLGRAG   E    IK M  EPD  VWGALLG+C+ H N++L 
Sbjct: 762 DKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLG 821

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E+A  HL +LEP + A+ ++L+ +YA +G
Sbjct: 822 EVALDHLVKLEPRNPAHFVVLSSIYAQSG 850



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 233/491 (47%), Gaps = 44/491 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G   H ++   GL R   I   L+  Y++  ++  AR +FD++PK ++  W A+   
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            ++     EAV  F  M + G++ +   + ++      LS+I     IH  V +  F + 
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA 264

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG- 272
             V + LID+YSKCG V+ A++VFD+MV++D V+   M++GY   G   E L L +++  
Sbjct: 265 --VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 273 ----------------------------------TPRVKPNVVTWNTLISGFSKSGDQVM 298
                                               R+  +++    L+  ++K G+   
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEK 382

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             +LF  ++ +    D+V+W+++I+ LV     +EA   F+EM +Q   P   T+ SILP
Sbjct: 383 AKQLFWGLQGR----DLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILP 438

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA  + ++ GK IH   +   ++ DL   +ALV MYAKCGF + A T F++MS R+ VT
Sbjct: 439 ACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVT 498

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I G A  G    AI++F ++       D  +   V+ AC  +  ++ G  +  ++ 
Sbjct: 499 WNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV 558

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            K            ++D+  + G L  A  +        D   W  ++ A   +G+ + A
Sbjct: 559 -KLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA 617

Query: 538 EIAAKHLSELE 548
            I++ H   LE
Sbjct: 618 -ISSFHQMRLE 627



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 226/468 (48%), Gaps = 41/468 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HAQ+IVSG      I T LI  Y+       AR +FD  P  +   W ++  AY R   
Sbjct: 51  IHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           + EA+ +++ M  +GL+ + +    VLKAC    ++  G   H  + +     D F+ + 
Sbjct: 110 YNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAG 169

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+DMYSK G +++A++VFD+M ++D+VA NAM++G  Q     EA++    +    V+P+
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 280 VVTW---------------------------------NTLISGFSKSGDQVMVSKLFQLM 306
            V+                                  N LI  +SK GD  +  ++F  M
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM 289

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
               V+ D VSW ++++G  HN C  E  + F +M          +  S   A A   ++
Sbjct: 290 ----VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDL 345

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
            +GKEIHGCA+   ++ D+ V + L+ MYAKCG   +A+ LF  +  R+ V W+++I   
Sbjct: 346 EKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAAL 405

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
              GY +EA+ LF +M+ +K K + ++  ++L AC  + L++LG+ + +    K  +   
Sbjct: 406 VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI-HCFTVKADMDSD 464

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
                 +V +  + G    A      MS+  D+  W +L+      G+
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLINGYAQIGD 511



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 228/480 (47%), Gaps = 45/480 (9%)

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
           + ++  LI  Y++C ++  AR +FD++   +   W  +   YA  G   E + +F +M +
Sbjct: 263 SAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
             ++ N     S   A     D+  G++IH   L+    +D  V + L+ MY+KCG  EK
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEK 382

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------- 283
           AK++F  +  +D+VA +A+++  VQ G   EAL+L +E+   ++KPN VT          
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442

Query: 284 --------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                                       L+S ++K G        F  M ++    D+V+
Sbjct: 443 LSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR----DIVT 498

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W S+I+G         A D F ++      P + T+  ++PACA   ++ +G  IHG  +
Sbjct: 499 WNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIV 558

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAI 436
            +G E D HV++AL+DMYAKCG +  A  LF+K    ++ VTWN +I     +G+  EAI
Sbjct: 559 KLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAI 618

Query: 437 ELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
             F+QM  E    + ++F +VL A  ++     G   F+    +   +  T     ++D+
Sbjct: 619 SSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDM 677

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLG--ACKNHGNIELAEIAAKHLSELEPESAA 553
             + G+L  + ++   M  + D   W A+L   A   HG+  +A  +    S+++ +S +
Sbjct: 678 YAKCGQLXYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 736



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P  + W S+I     +   +EA + +  M+ +G  P   T + +L AC  A N++ G   
Sbjct: 92  PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           HG     G+E D+ + + LVDMY+K G +  AR +FDKM +R+ V WN+MI G +     
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDP 211

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            EA++ F  M+    +   +S   +    C +  +EL + +   +   ++    +     
Sbjct: 212 CEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYV---FRRDFSSAVSNG 268

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN-IELAEIAAK 542
           ++DL  + G +  A  +   M  + D+  WG ++    ++G  +E+ E+  K
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDV-SWGTMMAGYAHNGCFVEVLELFDK 319



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + G   HA +I  G    T +   LI  Y +C  + ++  LF+E+   +   W A+  
Sbjct: 648 AFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLS 707

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
            YA  G+   A+ +F  M    ++ +     SVL AC H   +  G KI HS+  K+   
Sbjct: 708 GYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIK 767

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
            D    + ++D+  + G       +FDE
Sbjct: 768 PDLEHYACMVDLLGRAG-------LFDE 788


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 181/532 (34%), Positives = 287/532 (53%), Gaps = 32/532 (6%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           M  + R        Y E ++  ++ + L + K +H  +I S + +   +   L+  Y EC
Sbjct: 17  MNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIEC 76

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
             +  AR +FD + K +   W A+   Y    + ++A+ +F EM  +G++ N      +L
Sbjct: 77  GRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIIL 136

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
           KAC  LS +  G+++H+ +      +D  V ++L+ MY KCGS+ +A+++FD ++  DI+
Sbjct: 137 KACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDII 196

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
           +   M+  Y Q G   EA  L+ ++     KPN +T+ ++++  +  G    V ++ +  
Sbjct: 197 SWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHA 256

Query: 307 RAKGVE-------------------------------PDVVSWTSVISGLVHNFCNDEAF 335
              G+E                                DVVSW  +I     +    EA+
Sbjct: 257 LDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAY 316

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           D F +M ++G  P +    SIL ACASA  +   K+IH  A+  G+E D+ V +ALV MY
Sbjct: 317 DLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMY 376

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           +K G I +AR +FD+M  RN V+WN+MI G A HG   +A+E+F +M     K D ++F 
Sbjct: 377 SKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFV 436

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVL+AC H GLV+ G+  +  M + Y I P   H  CMVDLLGRAGRL EA   I  M+ 
Sbjct: 437 AVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAV 496

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +PD   WGALLG+C+ +GN+EL E+ AK   +L+P++AA  +LL+++YA AG
Sbjct: 497 DPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAG 548



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 223/473 (47%), Gaps = 69/473 (14%)

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
           EA+ V      +GL  + F+   VLK C    D+   +++H  ++K     +A V+++L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 222 DMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281
            +Y +CG +++A+ VFD +V+K   + NAM++GYV+   A +A+ L  E+    V+PN  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 282 TWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRAKGV---- 311
           T+  ++   +     K G +V                     M  K   +  A+ +    
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 312 -EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
              D++SWT +I     +    EA+    +M  +GF P + T  SIL ACAS   ++  K
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVK 250

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            +H  A+  G+E D+ V +ALV MYAK G I +AR +FD+M  R+ V+WN MI   A HG
Sbjct: 251 RVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHG 310

Query: 431 YCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVE-------------------LGQ 470
              EA +LF QM+ E  K D + F ++L AC   G +E                   +G 
Sbjct: 311 RGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGT 370

Query: 471 RLFNMMQEKYKI-----------MPRTEHYACMVDLLGRAGRLAEAYEMIKTMS---TEP 516
            L +M  +   I           +     +  M+  L + G   +A E+ + M+    +P
Sbjct: 371 ALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKP 430

Query: 517 DLFVWGALLGACKNHGNIELAE---IAAKHLSELEPESAANNMLLTDLYANAG 566
           D   + A+L AC + G ++      +A   +  +EP+ +  N ++ DL   AG
Sbjct: 431 DRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMV-DLLGRAG 482



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 129/281 (45%), Gaps = 27/281 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  K +H   + SGL    ++ T L+  Y++  +I  AR++FD +   N+  W A+  
Sbjct: 346 ALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMIS 405

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+ G  Q+A+ VF  M   G+K +     +VL AC H   +  G +   L +   +G 
Sbjct: 406 GLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEG-RSQYLAMTQVYGI 464

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           +  V   + ++D+  + G + +AK   D M V+ D     A++      G     + L E
Sbjct: 465 EPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYG----NVELGE 520

Query: 270 EIGTPRVK---PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVISG 324
            +   R+K    N  T+  L + ++++G   MVS +  +MR +G+  EP   SW  V   
Sbjct: 521 LVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPG-RSWIEV-DN 578

Query: 325 LVHNF------------CNDEAFDTFKEMLSQGFCPTSATI 353
            +H+F             N+      +++ ++G+ P +  +
Sbjct: 579 KIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLV 619


>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 168/426 (39%), Positives = 255/426 (59%), Gaps = 2/426 (0%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           +++ W ++   +++     +A+  F +M + G++ N   I S   AC  L  +  G +IH
Sbjct: 315 DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIH 374

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
              +K     +  V +SLIDMYSKCG +E A+ VFD ++EKD+   N+M+ GY Q G   
Sbjct: 375 CFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGG 434

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSV 321
           +A  L   +    V PNVVTWN +ISG  ++GD+     LFQ+M +  GV+ +  SW S+
Sbjct: 435 KAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSL 494

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+G       ++A   F++M S  F P S TI SILPACA+    ++ KEIHGC +   +
Sbjct: 495 IAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNL 554

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E +L V ++LVD YAK G I  +RT+F+ MS ++ +TWNS+I G   HG  D A +LF+Q
Sbjct: 555 ESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQ 614

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M     + +  +  +++ A    G+V+ G+ +F+ + E+++I+P  +HY  MVDL GR+G
Sbjct: 615 MRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSG 674

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           RLA+A E I+ M  EPD+ +W +LL AC+ HGN+ LA +AAK L ELEP++     LL  
Sbjct: 675 RLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQ 734

Query: 561 LYANAG 566
            YA  G
Sbjct: 735 AYALYG 740



 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 282/523 (53%), Gaps = 21/523 (4%)

Query: 57  NGIFIEAHYKMPIIS-RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ- 114
           NG+  EA   +  IS R   LS   Y   ++  I   +++ G+ LH ++   GL      
Sbjct: 58  NGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRM---GLVHRVNP 114

Query: 115 -IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            + TKL++ Y +C  +  AR +FD + + N++ W A+ GAY+R    +E V +F  M   
Sbjct: 115 FVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGD 174

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G+  + F+ P +L+ACG+  D+ T + IHSLV++        + +S++  + KCG +  A
Sbjct: 175 GVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLA 234

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           +K F  M E+D V+ N M++GY Q+G   EA  L++ +     KP +VT+N +I+ +S+ 
Sbjct: 235 RKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQL 294

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD  +V  L + M + G+ PDV +WTS+ISG   +    +A D FK+M+  G  P + TI
Sbjct: 295 GDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITI 354

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +S   ACAS  +++ G EIH  AI MG+  +  V ++L+DMY+KCG +  AR +FD + E
Sbjct: 355 ASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILE 414

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRL 472
           ++  TWNSMI G    GY  +A ELF ++ E   + + +++ A+++ C   G  +    L
Sbjct: 415 KDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDL 474

Query: 473 FNMMQEKYKIMPRTEHYACMV---DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
           F +M++   +   T  +  ++     LG   +    +  +++++  P+     ++L AC 
Sbjct: 475 FQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACA 534

Query: 530 NHGNIELAEIAAKHL------SELEPESAANNMLLTDLYANAG 566
           N     +AE   K +        LE E A  N L+ D YA +G
Sbjct: 535 N----VMAEKKIKEIHGCVLRRNLESELAVANSLV-DTYAKSG 572



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 184/399 (46%), Gaps = 21/399 (5%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++LQ+G  +H   I  G+AR T +   LI  Y++C  +  AR +FD I + +++ W ++ 
Sbjct: 365 KSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMI 424

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G Y + GY  +A  +F  +    +  N+    +++  C     I  G++  ++ L     
Sbjct: 425 GGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGC-----IQNGDEDQAMDLFQIME 479

Query: 212 TDAFVV------SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            D  V       +SLI  Y + G   KA  +F +M   +    +  +   +       A 
Sbjct: 480 KDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAE 539

Query: 266 NLVEEIGTPRVKPNV----VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
             ++EI    ++ N+       N+L+  ++KSG+      +F  M +K    D+++W S+
Sbjct: 540 KKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSK----DIITWNSI 595

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MG 380
           I+G + + C+D AF  F +M + G  P   T++SI+ A   A  + +G+ +         
Sbjct: 596 IAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQ 655

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELF 439
           +   L    A+VD+Y + G +++A    + M  E +   W S++  C  HG  + A+   
Sbjct: 656 ILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAA 715

Query: 440 NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            ++ E +  +H+ +  ++ A    G  E   ++  + +E
Sbjct: 716 KRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKE 754


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 185/506 (36%), Positives = 283/506 (55%), Gaps = 45/506 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           +HA ++ +G  +   ++TKLI   T C     + +AR +FD++PK ++  W  L   YA 
Sbjct: 48  IHALVVTNGCGQNLLLSTKLII--TACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  +EA+ ++  MH  GL  + +  P V+++C  LS +  G+++H  ++KH F +D FV
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFV 165

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            SSL+ MYS+ G     + VF EMV ++IV+  A+++GYVQ     E L +  E+     
Sbjct: 166 QSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT 225

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
           +PN VT                                    N LI+ + K G+      
Sbjct: 226 QPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARS 285

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF  M    V  ++VSW ++I+    N     A   F+ M ++       T+ S++ ACA
Sbjct: 286 LFDGM----VVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACA 341

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S   +  G+ +H      G+E ++ + +AL+DMYAKCG I  AR +F+++  R+ V+W S
Sbjct: 342 SLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTS 401

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI  CA+HG+ ++A++LF++M +E  K +  +F AV TAC H GLVE G++ F  M   Y
Sbjct: 402 MIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDY 461

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            IMP  EH ACMVDLLGRAG L EAYE I  M  EPD+ VWGALLG+C+ H N+ELAE+ 
Sbjct: 462 SIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELV 521

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A+ L  L+P++    +L++++YA AG
Sbjct: 522 AEKLFLLDPQTVTFYVLMSNIYAEAG 547



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 170/374 (45%), Gaps = 41/374 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H  ++  G      + + L+  Y++        ++F E+   NI  W A+  
Sbjct: 143 ALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIA 202

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y +  Y +E + VF EM   G + N   + SVL AC  L  +  G+ IH   +K     
Sbjct: 203 GYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDP 262

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + ++LI +Y KCG+VE A+ +FD MV +++V+ NAM++ Y Q      A+ L   + 
Sbjct: 263 DVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQ 322

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD------------------ 314
             +V  + +T  ++IS  +  G       + +L++ KG+E +                  
Sbjct: 323 AEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNID 382

Query: 315 -------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                        VVSWTS+I     +   ++A   F  M  +G  P S T +++  AC 
Sbjct: 383 LAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACR 442

Query: 362 SAANMRRGKE-----IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            +  +  G++     +   +I+ GVE   H  + +VD+  + G + EA    DKM  E +
Sbjct: 443 HSGLVEEGRKHFESMMRDYSIMPGVE---HC-ACMVDLLGRAGSLMEAYEFIDKMPVEPD 498

Query: 416 TVTWNSMIFGCANH 429
              W +++  C  H
Sbjct: 499 VSVWGALLGSCRIH 512


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 166/424 (39%), Positives = 261/424 (61%), Gaps = 1/424 (0%)

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P+  +  W A+    AR G  +EA+ V   M  QGL  +   + S+LK+  +   +  G 
Sbjct: 268 PEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGM 327

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H   L+H    DA+  ++L+DMY+KCG ++ A++VFD +  +++   N++V+G+   G
Sbjct: 328 EVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAG 387

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
               AL LVE +   R+ PNV TWN LI+G+S +G       L + ++A G+ P+VVSWT
Sbjct: 388 QFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWT 447

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           S+ISG  HN   +++F+ FKEM   G  P+  T+  +L ACA  A +++GKE+H  A+  
Sbjct: 448 SLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALRR 507

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
             + D+ V +AL+DMY+K G ++ A+ +F ++  +N V  N+M+ G A HG   EAI LF
Sbjct: 508 AYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITLF 567

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           + +     K D ++FTA+LTAC  +GL+  G   F+ M+ KY ++P  E+YACMVDLL R
Sbjct: 568 HDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLAR 627

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           +G L EA  +I+    +P   +WGALL  C  HGN++LAE+AA++L  LEP ++AN +++
Sbjct: 628 SGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNSANYLMI 687

Query: 559 TDLY 562
             LY
Sbjct: 688 MSLY 691



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 187/442 (42%), Gaps = 51/442 (11%)

Query: 100 LHAQLIVSGLA-RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHR----WIALTGAY 154
           LH+  + +G A R  ++A  L            +R L +E  ++   +    W       
Sbjct: 85  LHSLAVRAGHATREPRVACALSDLLARLGRGPSSRRLLEEADESEGGKDAVLWNKQVAML 144

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A  G   EA+  F EM  +G+  + + +  VL ACG  +    G+ +H+  LK     DA
Sbjct: 145 AEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVHAHALKAGL-VDA 203

Query: 215 --FVVSSLIDMYSKCGSVEKAKKVFDEMVEKD-IVAMNAMVSGYVQRGLATEALNLVEEI 271
              V   L  MY++   V  A  V          VA +A+V+  V+ GL  +A+ L    
Sbjct: 204 HPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGR- 262

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                                             M   G EP + +W +V+SG   +  +
Sbjct: 263 ----------------------------------MARDGPEPTLATWNAVLSGCARHGRD 288

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            EA    + ML QG  P + T+SS+L + A+A  +R G E+H   +  G+  D +  +AL
Sbjct: 289 REALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTAL 348

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH- 450
           VDMYAKCG +  AR +FD +  RN  TWNS++ G A  G  + A+EL  +M +R +LD  
Sbjct: 349 VDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERM-KRNRLDPN 407

Query: 451 -LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
             ++  ++T     GL      L   ++    + P    +  ++      G   +++   
Sbjct: 408 VTTWNGLITGYSLNGLSSQAMLLLRQIKAA-GLTPNVVSWTSLISGSCHNGEYEDSFNFF 466

Query: 510 KTM---STEPDLFVWGALLGAC 528
           K M     +P L     LL AC
Sbjct: 467 KEMQKDGVQPSLVTMLVLLRAC 488



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 119/291 (40%), Gaps = 42/291 (14%)

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D V W   ++ L      DEA   F+EM ++G       ++ +L AC  AA  R GK +H
Sbjct: 133 DAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVH 192

Query: 374 GCAIVMG-VEGDLHVRSALVDMYA--------------------------------KCGF 400
             A+  G V+    V   L  MYA                                + G 
Sbjct: 193 AHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGL 252

Query: 401 ISEARTLFDKMS----ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTA 455
           + +A  L  +M+    E    TWN+++ GCA HG   EA+ +  +M E+    D  + ++
Sbjct: 253 VDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSS 312

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           +L +  + G+V  G  +      ++ ++P       +VD+  + GRL  A  +  T+   
Sbjct: 313 LLKSVANAGMVRHGMEVHCFFL-RHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHR 371

Query: 516 PDLFVWGALLGACKNHGNIELA-EIAAK-HLSELEPESAANNMLLTDLYAN 564
            +L  W +L+      G  E A E+  +   + L+P     N L+T    N
Sbjct: 372 -NLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLN 421



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 121/283 (42%), Gaps = 23/283 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK LH   +         + T LI  Y++  ++  A+ +F  I   N+    A+   
Sbjct: 494 LKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTG 553

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGT 212
            A  G   EA+T+FH++   GLK +     ++L AC  +  I  G E   ++  K+    
Sbjct: 554 LAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVP 613

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA-LNLVEEI 271
            A   + ++D+ ++ G +++A      ++E+  V   A + G +  G +    L+L E  
Sbjct: 614 TAENYACMVDLLARSGYLDEAMA----LIERSPVDPGASLWGALLTGCSIHGNLDLAEVA 669

Query: 272 GTP--RVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVH 327
                R++P N   +  ++S +           L   M+A+GV      SW  +  G +H
Sbjct: 670 ARNLFRLEPYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQG-IH 728

Query: 328 NFCND-----EAFDTFKEMLS-------QGFCPTSATISSILP 358
            F  D     E  +  +E++S        G+ P ++ +   +P
Sbjct: 729 VFEVDGSPHPETAEICEELMSLVRQIKMTGYVPDTSCVVYNVP 771



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 96/246 (39%), Gaps = 44/246 (17%)

Query: 364 ANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----RNTVT 418
           A  R   ++H  A+  G    +  V  AL D+ A+ G    +R L ++  E    ++ V 
Sbjct: 77  AARRLAPQLHSLAVRAGHATREPRVACALSDLLARLGRGPSSRRLLEEADESEGGKDAVL 136

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC----------------C 461
           WN  +   A  G  DEAI  F +M+ R    D  +   VL AC                 
Sbjct: 137 WNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVHAHAL 196

Query: 462 HVGLVE----LGQRLFNMMQEKYKIM------------PRTEHYACMVDLLGRAGRLAEA 505
             GLV+    +   L  M  E   +             PR+  +  +V    R G + +A
Sbjct: 197 KAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDA 256

Query: 506 YEMIKTMS---TEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLTD 560
            E+   M+    EP L  W A+L  C  HG    A    + + E  L P++   + LL  
Sbjct: 257 MELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKS 316

Query: 561 LYANAG 566
           + ANAG
Sbjct: 317 V-ANAG 321


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 274/510 (53%), Gaps = 41/510 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +HA++   G      + T +++ YT+C ++  A  +FD +   N+  W A+  
Sbjct: 327 ALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIA 386

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A+ G   EA   F++M   G++ N     S+L AC   S +  G++I   +++  +G+
Sbjct: 387 GFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGS 446

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L+ MY+KCGS++ A +VF+++ ++++VA NAM++ YVQ      AL   + + 
Sbjct: 447 DDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL 506

Query: 273 TPRVKPNVVT------------------W-----------------NTLISGFSKSGDQV 297
              +KPN  T                  W                 N L+S F   GD +
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLM 566

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               LF  M  +    D+VSW ++I+G V +  N  AFD FK M   G  P   T + +L
Sbjct: 567 SAKNLFNDMPKR----DLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLL 622

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACAS   +  G+ +H        + D+ V + L+ MY KCG I +A  +F K+ ++N  
Sbjct: 623 NACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVY 682

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +W SMI G A HG   EA+ELF QM++   K D ++F   L+AC H GL+E G   F  M
Sbjct: 683 SWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM 742

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +E + I PR EHY CMVDL GRAG L EA E I  M  EPD  VWGALLGAC+ H N+EL
Sbjct: 743 KE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVEL 801

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE AA+   EL+P      ++L+++YA AG
Sbjct: 802 AEKAAQKKLELDPNDNGVFVILSNIYAAAG 831



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/547 (27%), Positives = 263/547 (48%), Gaps = 49/547 (8%)

Query: 28  RRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRS-FHLSPAAYSERIE 86
           R + FA +  TQ   +     S AG+      F EA   +  +  S   +    YS  ++
Sbjct: 65  RCVVFADIKDTQKANAVLNRLSKAGQ------FNEAMQVLERVDSSHIQIYRQTYSALLQ 118

Query: 87  IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHR 146
           + I+ + L  G+ ++  +  SG+     +   LI  Y +C N   A+ +FD++ + +++ 
Sbjct: 119 LCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYS 178

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W  L G Y + G ++EA  +  +M    +K +     S+L AC    ++  G ++++L+L
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL 238

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K  + TD FV ++LI+M+ KCG +  A KVFD +  +D+V   +M++G  + G   +A N
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298

Query: 267 LVEEIGTPRVKPNVVT----------------------------WNT-------LISGFS 291
           L + +    V+P+ V                             W+T       ++S ++
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           K G      ++F L++ +    +VVSWT++I+G   +   DEAF  F +M+  G  P   
Sbjct: 359 KCGSMEDALEVFDLVKGR----NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRV 414

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T  SIL AC+S + ++RG++I    I  G   D  VR+AL+ MYAKCG + +A  +F+K+
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQ 470
           S++N V WN+MI     H   D A+  F   ++E  K +  +FT++L  C     +ELG+
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGK 534

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
            +  ++  K  +         +V +    G L  A  +   M    DL  W  ++     
Sbjct: 535 WVHFLIM-KAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQ 592

Query: 531 HGNIELA 537
           HG  ++A
Sbjct: 593 HGKNQVA 599



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/541 (27%), Positives = 258/541 (47%), Gaps = 66/541 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +  G+ L+  ++ +G      + T LI  + +C +I  A  +FD +P  ++  W ++ 
Sbjct: 225 RNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMI 284

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
              AR G  ++A  +F  M  +G++ +     S+L+AC H   +  G+K+H+ + +  + 
Sbjct: 285 TGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWD 344

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           T+ +V ++++ MY+KCGS+E A +VFD +  +++V+  AM++G+ Q G   EA     ++
Sbjct: 345 TEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKM 404

Query: 272 GTPRVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQL 305
               ++PN VT+ +++   S     K G Q+                     M +K   L
Sbjct: 405 IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSL 464

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             A  V     + +VV+W ++I+  V +   D A  TF+ +L +G  P S+T +SIL  C
Sbjct: 465 KDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            S+ ++  GK +H   +  G+E DLHV +ALV M+  CG +  A+ LF+ M +R+ V+WN
Sbjct: 525 KSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWN 584

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           ++I G   HG    A + F  M+E   K D ++FT +L AC     +  G+RL  ++ E 
Sbjct: 585 TIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA 644

Query: 480 ----------------------------YKIMPRTEHYACMVDLLGRA--GRLAEAYEMI 509
                                       +  +P+   Y+    + G A  GR  EA E+ 
Sbjct: 645 AFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELF 704

Query: 510 KTMSTE---PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM-LLTDLYANA 565
             M  E   PD   +   L AC + G IE      + + E   E    +   + DL+  A
Sbjct: 705 YQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRA 764

Query: 566 G 566
           G
Sbjct: 765 G 765


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 274/510 (53%), Gaps = 41/510 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +HA++   G      + T +++ YT+C ++  A  +FD +   N+  W A+  
Sbjct: 327 ALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIA 386

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A+ G   EA   F++M   G++ N     S+L AC   S +  G++I   +++  +G+
Sbjct: 387 GFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGS 446

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L+ MY+KCGS++ A +VF+++ ++++VA NAM++ YVQ      AL   + + 
Sbjct: 447 DDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL 506

Query: 273 TPRVKPNVVT------------------W-----------------NTLISGFSKSGDQV 297
              +KPN  T                  W                 N L+S F   GD +
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLM 566

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               LF  M  +    D+VSW ++I+G V +  N  AFD FK M   G  P   T + +L
Sbjct: 567 SAKNLFNDMPKR----DLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLL 622

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACAS   +  G+ +H        + D+ V + L+ MY KCG I +A  +F K+ ++N  
Sbjct: 623 NACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVY 682

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +W SMI G A HG   EA+ELF QM++   K D ++F   L+AC H GL+E G   F  M
Sbjct: 683 SWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM 742

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +E + I PR EHY CMVDL GRAG L EA E I  M  EPD  VWGALLGAC+ H N+EL
Sbjct: 743 KE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVEL 801

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE AA+   EL+P      ++L+++YA AG
Sbjct: 802 AEKAAQKKLELDPNDNGVFVILSNIYAAAG 831



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/547 (27%), Positives = 263/547 (48%), Gaps = 49/547 (8%)

Query: 28  RRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRS-FHLSPAAYSERIE 86
           R + FA +  TQ   +     S AG+      F EA   +  +  S   +    YS  ++
Sbjct: 65  RCVVFADIKDTQKANAVLNRLSKAGQ------FNEAMQVLERVDSSHIQIYRQTYSALLQ 118

Query: 87  IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHR 146
           + I+ + L  G+ ++  +  SG+     +   LI  Y +C N   A+ +FD++ + +++ 
Sbjct: 119 LCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYS 178

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W  L G Y + G ++EA  +  +M    +K +     S+L AC    ++  G ++++L+L
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL 238

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K  + TD FV ++LI+M+ KCG +  A KVFD +  +D+V   +M++G  + G   +A N
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298

Query: 267 LVEEIGTPRVKPNVVT----------------------------WNT-------LISGFS 291
           L + +    V+P+ V                             W+T       ++S ++
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           K G      ++F L++ +    +VVSWT++I+G   +   DEAF  F +M+  G  P   
Sbjct: 359 KCGSMEDALEVFDLVKGR----NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRV 414

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T  SIL AC+S + ++RG++I    I  G   D  VR+AL+ MYAKCG + +A  +F+K+
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQ 470
           S++N V WN+MI     H   D A+  F   ++E  K +  +FT++L  C     +ELG+
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGK 534

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
            +  ++  K  +         +V +    G L  A  +   M    DL  W  ++     
Sbjct: 535 WVHFLIM-KAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQ 592

Query: 531 HGNIELA 537
           HG  ++A
Sbjct: 593 HGKNQVA 599



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/541 (27%), Positives = 258/541 (47%), Gaps = 66/541 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +  G+ L+  ++ +G      + T LI  + +C +I  A  +FD +P  ++  W ++ 
Sbjct: 225 RNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMI 284

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
              AR G  ++A  +F  M  +G++ +     S+L+AC H   +  G+K+H+ + +  + 
Sbjct: 285 TGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWD 344

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           T+ +V ++++ MY+KCGS+E A +VFD +  +++V+  AM++G+ Q G   EA     ++
Sbjct: 345 TEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKM 404

Query: 272 GTPRVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQL 305
               ++PN VT+ +++   S     K G Q+                     M +K   L
Sbjct: 405 IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSL 464

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             A  V     + +VV+W ++I+  V +   D A  TF+ +L +G  P S+T +SIL  C
Sbjct: 465 KDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            S+ ++  GK +H   +  G+E DLHV +ALV M+  CG +  A+ LF+ M +R+ V+WN
Sbjct: 525 KSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWN 584

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           ++I G   HG    A + F  M+E   K D ++FT +L AC     +  G+RL  ++ E 
Sbjct: 585 TIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA 644

Query: 480 ----------------------------YKIMPRTEHYACMVDLLGRA--GRLAEAYEMI 509
                                       +  +P+   Y+    + G A  GR  EA E+ 
Sbjct: 645 AFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELF 704

Query: 510 KTMSTE---PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM-LLTDLYANA 565
             M  E   PD   +   L AC + G IE      + + E   E    +   + DL+  A
Sbjct: 705 YQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRA 764

Query: 566 G 566
           G
Sbjct: 765 G 765


>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 168/426 (39%), Positives = 255/426 (59%), Gaps = 2/426 (0%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           +++ W ++   +++     +A+  F +M + G++ N   I S   AC  L  +  G +IH
Sbjct: 315 DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIH 374

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
              +K     +  V +SLIDMYSKCG +E A+ VFD ++EKD+   N+M+ GY Q G   
Sbjct: 375 CFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGG 434

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSV 321
           +A  L   +    V PNVVTWN +ISG  ++GD+     LFQ+M +  GV+ +  SW S+
Sbjct: 435 KAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSL 494

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+G       ++A   F++M S  F P S TI SILPACA+    ++ KEIHGC +   +
Sbjct: 495 IAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNL 554

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E +L V ++LVD YAK G I  +RT+F+ MS ++ +TWNS+I G   HG  D A +LF+Q
Sbjct: 555 ESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQ 614

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M     + +  +  +++ A    G+V+ G+ +F+ + E+++I+P  +HY  MVDL GR+G
Sbjct: 615 MRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSG 674

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           RLA+A E I+ M  EPD+ +W +LL AC+ HGN+ LA +AAK L ELEP++     LL  
Sbjct: 675 RLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQ 734

Query: 561 LYANAG 566
            YA  G
Sbjct: 735 AYALYG 740



 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 282/523 (53%), Gaps = 21/523 (4%)

Query: 57  NGIFIEAHYKMPIIS-RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ- 114
           NG+  EA   +  IS R   LS   Y   ++  I   +++ G+ LH ++   GL      
Sbjct: 58  NGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRM---GLVHRVNP 114

Query: 115 -IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            + TKL++ Y +C  +  AR +FD + + N++ W A+ GAY+R    +E V +F  M   
Sbjct: 115 FVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGD 174

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G+  + F+ P +L+ACG+  D+ T + IHSLV++        + +S++  + KCG +  A
Sbjct: 175 GVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLA 234

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           +K F  M E+D V+ N M++GY Q+G   EA  L++ +     KP +VT+N +I+ +S+ 
Sbjct: 235 RKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQL 294

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD  +V  L + M + G+ PDV +WTS+ISG   +    +A D FK+M+  G  P + TI
Sbjct: 295 GDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITI 354

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +S   ACAS  +++ G EIH  AI MG+  +  V ++L+DMY+KCG +  AR +FD + E
Sbjct: 355 ASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILE 414

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRL 472
           ++  TWNSMI G    GY  +A ELF ++ E   + + +++ A+++ C   G  +    L
Sbjct: 415 KDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDL 474

Query: 473 FNMMQEKYKIMPRTEHYACMV---DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
           F +M++   +   T  +  ++     LG   +    +  +++++  P+     ++L AC 
Sbjct: 475 FQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACA 534

Query: 530 NHGNIELAEIAAKHL------SELEPESAANNMLLTDLYANAG 566
           N     +AE   K +        LE E A  N L+ D YA +G
Sbjct: 535 N----VMAEKKIKEIHGCVLRRNLESELAVANSLV-DTYAKSG 572



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 184/399 (46%), Gaps = 21/399 (5%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++LQ+G  +H   I  G+AR T +   LI  Y++C  +  AR +FD I + +++ W ++ 
Sbjct: 365 KSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMI 424

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G Y + GY  +A  +F  +    +  N+    +++  C     I  G++  ++ L     
Sbjct: 425 GGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGC-----IQNGDEDQAMDLFQIME 479

Query: 212 TDAFVV------SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            D  V       +SLI  Y + G   KA  +F +M   +    +  +   +       A 
Sbjct: 480 KDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAE 539

Query: 266 NLVEEIGTPRVKPNV----VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
             ++EI    ++ N+       N+L+  ++KSG+      +F  M +K    D+++W S+
Sbjct: 540 KKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSK----DIITWNSI 595

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MG 380
           I+G + + C+D AF  F +M + G  P   T++SI+ A   A  + +G+ +         
Sbjct: 596 IAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQ 655

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELF 439
           +   L    A+VD+Y + G +++A    + M  E +   W S++  C  HG  + A+   
Sbjct: 656 ILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAA 715

Query: 440 NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            ++ E +  +H+ +  ++ A    G  E   ++  + +E
Sbjct: 716 KRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKE 754


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 167/467 (35%), Positives = 273/467 (58%), Gaps = 33/467 (7%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           + +A  +FD+IP+ N   W A+   Y++   H++ + +F +M    +  N F  P +LK+
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  ++ +  GE++H  V+K  F  + FV ++LIDMY+  G++  A +VF EM+E++++A 
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 249 NAMVSGYV----------------QRGLA---------TEALNLVE--EIGTPRVKPNVV 281
            AM++GY+                +R +           EA +++   E+       +V+
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM 180

Query: 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
           +WNT+++G++ +GD +   +LF+ M     E +V SW ++I G   N C  E    FK M
Sbjct: 181 SWNTVLNGYASNGDVMACERLFEEMP----ERNVFSWNALIGGYTRNGCFSEVLSAFKRM 236

Query: 342 LSQG-FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           L  G   P  AT+ ++L ACA    +  GK +H  A   G +G+++VR+AL+DMYAKCG 
Sbjct: 237 LVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGV 296

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
           +  A  +F  M  ++ ++WN++I G A HG+  +A+ LF+ M+   +  D ++F  +L A
Sbjct: 297 VETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCA 356

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C H+GLVE G   F  M + Y I+PR EHY C+VDLLGRAG LA A + I+ M  E D  
Sbjct: 357 CTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAV 416

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +W ALLGAC+ + N+ELAE+A + L E EP++ AN ++L+++Y + G
Sbjct: 417 IWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFG 463



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 122/306 (39%), Gaps = 71/306 (23%)

Query: 123 YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFV 181
           Y    ++     LF+E+P+ N+  W AL G Y R G   E ++ F  M + G +  N   
Sbjct: 189 YASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDAT 248

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + +VL AC  L  +  G+ +H     H +  + +V ++L+DMY+KCG VE A  VF  M 
Sbjct: 249 LVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMD 308

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
            KD+++ N ++ G    G   +ALN                                   
Sbjct: 309 NKDLISWNTIIGGLAVHGHGADALN----------------------------------- 333

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF  M+  G  PD +++  ++    H    ++ F  FK M             SI+P   
Sbjct: 334 LFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDD---------YSIVPRI- 383

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
                    E +GC               +VD+  + G ++ A     KM  E + V W 
Sbjct: 384 ---------EHYGC---------------IVDLLGRAGLLAHAVDFIRKMPIEADAVIWA 419

Query: 421 SMIFGC 426
           +++  C
Sbjct: 420 ALLGAC 425


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 279/477 (58%), Gaps = 41/477 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R    G+ +HA LI + + +   + T+L+  Y+EC  +++A+ +F+ + + N + W ++ 
Sbjct: 493 RNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMI 552

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y + G  QEA+ +F +M + G+K + F + S+L +C  LSD   G ++H+ +++++  
Sbjct: 553 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 612

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  +   L+DMY+KCGS++ A KV+D+ ++KD++  N MVS +V  G A +A NL +++
Sbjct: 613 EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQM 672

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + N   WN++++G++  G                                     
Sbjct: 673 E----QRNTALWNSILAGYANKG-----------------------------------LK 693

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSA 390
            E+F+ F EML         T+ +I+  C+S   +  G ++H   I  G V   + + +A
Sbjct: 694 KESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETA 753

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-D 449
           LVDMY+KCG I++ART+FD M+ +N V+WN+MI G + HG   EA+ L+ +M ++    +
Sbjct: 754 LVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPN 813

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++F A+L+AC H GLVE G R+F  MQE Y I  + EHY CMVDLLGRAGRL +A E +
Sbjct: 814 EVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFV 873

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + M  EP++  WGALLGAC+ H ++++  +AA+ L EL+P++    ++++++YA AG
Sbjct: 874 EKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAG 930



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 248/505 (49%), Gaps = 65/505 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R+   GK +H++LI  G    T +   LI  Y +C +      +FDE+ + N   W ++ 
Sbjct: 290 RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSII 349

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A A+ G+  +A+ +F  M   G K N F + S+L A   L+DIG G ++H  ++++   
Sbjct: 350 SAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLN 409

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  + S+L+DMYSKCG VE+A +VF  ++E++ V+ NA+++GYVQ G A EAL L  ++
Sbjct: 410 SDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDM 469

Query: 272 GTPR-VKPNVVTWNTLIS-----GFSKSGDQV---------------------MVSKLFQ 304
            +   ++P+  T+ TL++          G Q+                     M S+  +
Sbjct: 470 QSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 529

Query: 305 LMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           L  AK +     E +  SW S+I G   N    EA   FK+M   G  P   ++SS+L +
Sbjct: 530 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 589

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI------------------ 401
           C S ++ ++G+E+H   +   +E +  ++  LVDMYAKCG +                  
Sbjct: 590 CVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILN 649

Query: 402 -------------SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
                        ++A+ LFD+M +RNT  WNS++ G AN G   E+   F +M E   +
Sbjct: 650 NVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIE 709

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            D L+   ++  C  +  +E G +L +++ +K  +         +VD+  + G + +A  
Sbjct: 710 YDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKART 769

Query: 508 MIKTMSTEPDLFVWGALLGACKNHG 532
           +   M+ + ++  W A++     HG
Sbjct: 770 VFDNMNGK-NIVSWNAMISGYSKHG 793



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/505 (27%), Positives = 239/505 (47%), Gaps = 52/505 (10%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC---QNIHHA 132
           ++P  YS  I+  I   + Q GK +H Q+I +G      + TK++  Y       ++ +A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R LF+E+P+ N+  W  +  AYAR   + E + ++  M   G   + F  PSV+KAC  +
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM 188

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
            D+G   ++ S V+K     + FV  +L+D Y++ G ++ A    DE+    +V  NA++
Sbjct: 189 EDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVI 248

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------------------------- 283
           +GYV+     EA  + + +    V P+  T+                             
Sbjct: 249 AGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 308

Query: 284 ------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
                 N LI  ++K  D+    K+F  M     E + V+W S+IS        ++A   
Sbjct: 309 GDTFVGNALIDMYAKCDDEESCLKVFDEMG----ERNQVTWNSIISAEAQFGHFNDALVL 364

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F  M   G+      + SIL A A  A++ +G+E+HG  +   +  D+ + SALVDMY+K
Sbjct: 365 FLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSK 424

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTA 455
           CG + EA  +F  + ERN V++N+++ G    G  +EA+EL++ M+    +  D  +FT 
Sbjct: 425 CGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTT 484

Query: 456 VLTACCHVGLVELGQRLFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           +LT C +      G+++   +        I+  TE    +V +    GRL  A E+   M
Sbjct: 485 LLTLCANQRNDNQGRQIHAHLIRANITKNIIVETE----LVHMYSECGRLNYAKEIFNRM 540

Query: 513 STEPDLFVWGALLGACKNHGNIELA 537
           + E + + W +++   + +G  + A
Sbjct: 541 A-ERNAYSWNSMIEGYQQNGETQEA 564



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 246/510 (48%), Gaps = 58/510 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           L + ++ +GL     +   L+  Y     +  A    DEI  T++  W A+   Y +   
Sbjct: 197 LQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILS 256

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA  +F  M   G+  + F   S L+ CG L     G+++HS ++   F  D FV ++
Sbjct: 257 WEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNA 316

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL------------ 267
           LIDMY+KC   E   KVFDEM E++ V  N+++S   Q G   +AL L            
Sbjct: 317 LIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSN 376

Query: 268 -------------VEEIGTPR----------VKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
                        + +IG  R          +  +++  + L+  +SK G   MV +  Q
Sbjct: 377 RFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCG---MVEEAHQ 433

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASA 363
           + R+  +E + VS+ ++++G V     +EA + + +M S+ G  P   T +++L  CA+ 
Sbjct: 434 VFRSL-LERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQ 492

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            N  +G++IH   I   +  ++ V + LV MY++CG ++ A+ +F++M+ERN  +WNSMI
Sbjct: 493 RNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMI 552

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM----QE 478
            G   +G   EA+ LF QM+    K D  S +++L++C  +   + G+ L N +     E
Sbjct: 553 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 612

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +  I+        +VD+  + G +  A++ +   + + D+ +   ++ A  N G    A 
Sbjct: 613 EEGILQ-----VVLVDMYAKCGSMDYAWK-VYDQTIKKDVILNNVMVSAFVNSGR---AN 663

Query: 539 IAAKHLSELEPESAA--NNMLLTDLYANAG 566
            A     ++E  + A  N++L    YAN G
Sbjct: 664 DAKNLFDQMEQRNTALWNSILAG--YANKG 691



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 201/442 (45%), Gaps = 81/442 (18%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK---AK 234
           N     S+++ C   +    G+ IH+ ++ + +  DA++++ ++ +Y++ G ++    A+
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQ--------------RG-----------------LATE 263
           K+F+EM E+++ A N M+  Y +              RG                 +A E
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAME 189

Query: 264 ALNLVEEIGTPRVKP----NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
            +  V ++ +  VK     N+     L+ G+++ G   M   +  L   +G    VV+W 
Sbjct: 190 DMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFG--WMDDAVTSLDEIEGTS--VVTWN 245

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           +VI+G V     +EA+  F  ML  G CP + T +S L  C +  +   GK++H   I  
Sbjct: 246 AVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIAC 305

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           G +GD  V +AL+DMYAKC        +FD+M ERN VTWNS+I   A  G+ ++A+ LF
Sbjct: 306 GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF 365

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQ----------RLFN-------------- 474
            +M+E   K +  +  ++L A    GL ++G+           L N              
Sbjct: 366 LRMQESGYKSNRFNLGSILMAS--AGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYS 423

Query: 475 ---MMQEKYKI----MPRTE-HYACMVDLLGRAGRLAEAYEMIKTMSTE----PDLFVWG 522
              M++E +++    + R E  Y  ++    + G+  EA E+   M +E    PD F + 
Sbjct: 424 KCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFT 483

Query: 523 ALLGACKNHGNIELAEIAAKHL 544
            LL  C N  N         HL
Sbjct: 484 TLLTLCANQRNDNQGRQIHAHL 505


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 204/591 (34%), Positives = 303/591 (51%), Gaps = 97/591 (16%)

Query: 72  RSFHLSPAAYSERIEIYIRD-------------RALQSGKILHAQLIVSGLARLTQIATK 118
           +S HLS AA+   + +  +              R L  GK +HA  + +G      + TK
Sbjct: 40  QSMHLSTAAHHTHLSLLDKQIDSSTYASLLESCRTLNLGKQVHAHTLKTGFHGHEFVETK 99

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+  Y     +  A ++F ++P+ N++ W A+   +   GY +EA+++F ++ +  +   
Sbjct: 100 LLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLE 159

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKH------------SFGTDAFV-VSSLIDMYS 225
            FV P VLK CG L  +  G ++H +V+K              F     V  +++I  Y 
Sbjct: 160 FFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYC 219

Query: 226 KCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALN-----LVEE-------- 270
           + G+VEKAK++FD+M  V KD ++ N+M+SGY    L  EAL+     L+EE        
Sbjct: 220 ENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFT 279

Query: 271 ----------IGTPRVKPNV--------VTWNTLISG-----FSKSGD------------ 295
                     + + R    V        + WNT + G     +SK  D            
Sbjct: 280 LGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVT 339

Query: 296 -------QVMVS------------KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
                   V++S             L Q M+  G EP+V +W  +ISG V N  N+ A  
Sbjct: 340 ERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALR 399

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F EM +    P   T+  ILPACA  A + RGK++H  +I  G E D+H+ +ALVDMYA
Sbjct: 400 LFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYA 459

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTA 455
           KCG I  A  +++++S  N V+ N+M+   A HG+ DE I LF N +    + DH++F +
Sbjct: 460 KCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLS 519

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           VL++C H G VE G   F++M   Y + P  +HY C+VDLL RAGRL EAYE++K +  +
Sbjct: 520 VLSSCVHAGAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRK 578

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           PD  +WGALLG C   GN+EL EIAA+ L ELEP +  N +LL +LYA AG
Sbjct: 579 PDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAG 629


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/510 (36%), Positives = 266/510 (52%), Gaps = 71/510 (13%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  + +H    VSG    + + + L+  Y +C  I  A  +FD + + ++  W AL  
Sbjct: 129 ALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVA 188

Query: 153 AYARRG-----------------------------------YHQEAVTVFHEMHIQGLKQ 177
           AYAR+G                                    + EAV +F +MH++G + 
Sbjct: 189 AYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEP 248

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +   I SVL A G L D+  G  IH  V+K    +D  V S+LIDMY KC    +  +VF
Sbjct: 249 DGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVF 308

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           D+M   D+ + NA + G  + G    +L                                
Sbjct: 309 DQMDHMDVGSCNAFIFGLSRNGQVESSL-------------------------------- 336

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              +LF+ ++ +G+E +VVSWTS+I+    N  + EA + F+EM   G  P S TI  +L
Sbjct: 337 ---RLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLL 393

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           PAC + A +  GK  H  ++  G+  D++V SAL+DMYAKCG I  +R  FD +  +N V
Sbjct: 394 PACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLV 453

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WN++I G A HG   EA+E+F+ M+   +K D +SFT VL+AC   GL E G   FN M
Sbjct: 454 CWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSM 513

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             KY I  R EHYACMV LL RAG+L +AY MI+ M   PD  VWGALL +C+ H N+ L
Sbjct: 514 SSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSL 573

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            E+AA+ L ELEP +  N +LL+++YA+ G
Sbjct: 574 GEVAAEKLFELEPSNPGNYILLSNIYASKG 603



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 44/453 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L   +  HA ++ +GL   T +ATKL++ Y        A ++ D +P+ N+  +  L  
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A+++      A++ F +M  +GL  +  V+PS +KAC  LS +    ++H +     F +
Sbjct: 88  AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS 147

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D+FV SSL+ MY KC  +  A +VFD M E D+V+ +A+V+ Y ++G   EA  L  E+G
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V+PN+++WN +I+GF+ SG       +F  M  +G EPD                  
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD------------------ 249

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
                              TISS+LPA     ++  G  IHG  I  G+  D  V SAL+
Sbjct: 250 -----------------GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALI 292

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           DMY KC   SE   +FD+M   +  + N+ IFG + +G  + ++ LF Q++++  +L+ +
Sbjct: 293 DMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVV 352

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA-----GRLAEAY 506
           S+T+++  C   G       LF  MQ    + P +    C++   G       G+ A  +
Sbjct: 353 SWTSMIACCSQNGRDMEALELFREMQIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHCF 411

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
            + + +ST  D++V  AL+      G I+ + I
Sbjct: 412 SLRRGIST--DVYVGSALIDMYAKCGRIQASRI 442



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/179 (18%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           ++ A++ + ++ H   +  G+  D H+ + L+  YA     ++A  + D + E N  +++
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           ++I+  +       A+  F+QM  R  + D+    + + AC  +  ++  +++  +    
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS 143

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
                 +   + +V +  +  ++ +A+ +   M  EPD+  W AL+ A    G ++ A+
Sbjct: 144 -GFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDEAK 200


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/509 (37%), Positives = 272/509 (53%), Gaps = 75/509 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT---------- 142
           ALQ+GK +H   +VSGL   + + + L+  Y +  ++  AR +FD++P+           
Sbjct: 89  ALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALIS 148

Query: 143 -------------------------NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
                                    N+  W  +   + R G + +AV +F  MH++GLK 
Sbjct: 149 RFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKP 208

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +   + SVL A G L     G +IH  V+K   G D FVVS+LIDMY KC    +   VF
Sbjct: 209 DGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVF 268

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           +EM E D+ A NA                                   L++G S++G   
Sbjct: 269 NEMDEVDVGACNA-----------------------------------LVTGLSRNG--- 290

Query: 298 MVSKLFQLMRA-KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           +V    ++ +  KG++ +VVSWTS+I+    N  + EA + F+EM  +G  P S TI  +
Sbjct: 291 LVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCL 350

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPAC + A +  GK  H  ++  G+  D++V SAL+DMYAKCG +  +R  FD M  RN 
Sbjct: 351 LPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNL 410

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WNS++ G A HG   EAI +F  M+   +K DH+SFT VL+AC   GL E G   F+ 
Sbjct: 411 VSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDS 470

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M   + +  R EHY+CMV LLGR+GRL EAY MIK M  EPD  VWGALL +C+ H  ++
Sbjct: 471 MSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVD 530

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYAN 564
           L EIAAK + ELEP +  N +LL+++YA+
Sbjct: 531 LGEIAAKRVFELEPRNPGNYILLSNIYAS 559



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 170/349 (48%), Gaps = 37/349 (10%)

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +++  +    + VF  M  QG+  +  V+P+V+K C  LS + TG+++H   L    G D
Sbjct: 49  FSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLD 108

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           + V+SSL+ MY +   ++ A+ VFD++ +  +V  +A++S + ++G   E   L  +   
Sbjct: 109 SVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRD 168

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             V+ N+V+WN +ISGF++SG  +    +FQ M  +G++PD                   
Sbjct: 169 LGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPD------------------- 209

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
                             ++SS+LPA         G +IH   I  G+  D  V SAL+D
Sbjct: 210 ----------------GTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALID 253

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF 453
           MY KC   SE   +F++M E +    N+++ G + +G  D A+E+F Q +    L+ +S+
Sbjct: 254 MYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGM-DLNVVSW 312

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           T+++ +C   G       LF  MQ +  + P +    C++   G    L
Sbjct: 313 TSMIASCSQNGKDMEALELFREMQIE-GVKPNSVTIPCLLPACGNIAAL 360


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/485 (37%), Positives = 274/485 (56%), Gaps = 9/485 (1%)

Query: 85   IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP---- 140
            I +Y R+  L+S + +   ++   L+    I    ++ YT    +  A  L DE+     
Sbjct: 668  IVMYSRNGKLESSRKVFNSMVDRNLSSWNSI----VSSYTRLGYVDDAMGLLDEMETCGL 723

Query: 141  KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
            K +I  W +L   YA +   ++A+ V   + I GLK N   I S+L+A      +  G+ 
Sbjct: 724  KPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKA 783

Query: 201  IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
            IH  V+++    D +V ++LIDMY K G +  A+ VFD M EK+IVA N+++SG    GL
Sbjct: 784  IHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGL 843

Query: 261  ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
              EA  L+  +    +K N VTWN+L+SG++  G       +   M+  GVEP+VVSWT+
Sbjct: 844  LKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTA 903

Query: 321  VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
            ++SG   N         F +M  +G  P SATISS+L      + +  GKE+H   +   
Sbjct: 904  ILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNN 963

Query: 381  VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            +  D HV +ALVDMYAK G +  A  +F  +  +   +WN MI G A     +E I +FN
Sbjct: 964  LTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFN 1023

Query: 441  QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
             M E   + D ++FT+VL+ C + GLV  G + F++M+  Y ++P  EH +CMV+LLGR+
Sbjct: 1024 AMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGRS 1083

Query: 500  GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
            G L EA++ I+TM  +PD  +WGA L +CK H ++ELAEIA K L  LEP ++AN M++ 
Sbjct: 1084 GYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMI 1143

Query: 560  DLYAN 564
            +LY+N
Sbjct: 1144 NLYSN 1148



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 210/438 (47%), Gaps = 68/438 (15%)

Query: 97  GKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G  +H  LI  GL    T++ + L+ FY  C ++  A  +FDE+PK +   W  +     
Sbjct: 543 GFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNL 602

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G  ++AV +F  M   G K     +  +L+ C +      G +IH  VL+  F ++  
Sbjct: 603 QSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVS 662

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + +SLI MYS+ G +E ++KVF+ MV++++ + N++VS Y + G   +A+ L++E+ T  
Sbjct: 663 MCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCG 722

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
           +KP++VTWN+L+SG++                +K +  D ++                  
Sbjct: 723 LKPDIVTWNSLLSGYA----------------SKALSRDAIA------------------ 748

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
              K +   G  P +++ISS+L A      ++ GK IHG  I   +  D++V + L+DMY
Sbjct: 749 -VLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMY 807

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455
            K G++  AR +FD M E+N V WNS+I G +  G   EA  L ++ME+    + +   A
Sbjct: 808 IKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEK----EGIKSNA 863

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           V                +N +   Y    +TE    +V  + + G              E
Sbjct: 864 V---------------TWNSLVSGYATWGKTEKALAVVGKMKKNG-------------VE 895

Query: 516 PDLFVWGALLGACKNHGN 533
           P++  W A+L  C  +GN
Sbjct: 896 PNVVSWTAILSGCSKNGN 913


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 288/510 (56%), Gaps = 40/510 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H++++ +G    T + T L+  Y +C +    R +F+++   ++  W  + G
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 301

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  GY +EA  V+++M  +G+  N      +L AC + + +  G++IHS V K  F +
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS 361

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++LI MYS+CGS++ A+ VFD+MV KD+++  AM+ G  + G   EAL + +E+ 
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              V+PN VT+                                   NTL++ +S  G   
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVK 481

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F  M    ++ D+V++ ++I G   +    EA   F  +  +G  P   T  ++L
Sbjct: 482 DARQVFDRM----IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINML 537

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACA++ ++   +EIH      G   D  V +ALV  YAKCG  S+A  +F+KM++RN +
Sbjct: 538 NACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVI 597

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WN++I G A HG   +A++LF +M+ E  K D ++F ++L+AC H GL+E G+R F  M
Sbjct: 598 SWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSM 657

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            + + I+P  EHY CMVDLLGRAG+L EA  +IKTM  + +  +WGALLGAC+ HGN+ +
Sbjct: 658 SQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPV 717

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE AA+   +L+ ++A   + L+ +YA AG
Sbjct: 718 AERAAESSLKLDLDNAVVYVALSHMYAAAG 747



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 242/476 (50%), Gaps = 42/476 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H Q + +GL    ++A  ++  Y +C +I  AR +FD++ K ++  W    G
Sbjct: 141 ALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIG 200

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA  G  + A  +F +M  +G+  N     SVL A    + +  G+ +HS +L     +
Sbjct: 201 GYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHES 260

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L+ MY+KCGS +  ++VF+++V +D++A N M+ G  + G   EA  +  ++ 
Sbjct: 261 DTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQ 320

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              V PN +T+                                   N LIS +S+ G   
Sbjct: 321 REGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGS-- 378

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K  +L+  K V  DV+SWT++I GL  +    EA   ++EM   G  P   T +SIL
Sbjct: 379 --IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSIL 436

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC+S A +  G+ IH   +  G+  D HV + LV+MY+ CG + +AR +FD+M +R+ V
Sbjct: 437 NACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIV 496

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            +N+MI G A H    EA++LF++++E   K D +++  +L AC + G +E  + +  ++
Sbjct: 497 AYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLV 556

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           + K      T     +V    + G  ++A  + + M T+ ++  W A++G    HG
Sbjct: 557 R-KGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM-TKRNVISWNAIIGGSAQHG 610



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/511 (24%), Positives = 248/511 (48%), Gaps = 41/511 (8%)

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM 134
            ++ + Y + ++  I  + L +G+ +H  +I             LI  Y +C +I  AR 
Sbjct: 20  QVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQ 79

Query: 135 LFDEIP--KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           ++ ++   +  +H W A+   Y + GY ++A+ +  +M   GL  +   I S L +C   
Sbjct: 80  VWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSP 139

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
             +  G +IH   ++     D  V + +++MY+KCGS+E+A++VFD+M +K +V+    +
Sbjct: 140 GALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG------------------ 294
            GY   G +  A  + +++    V PN +T+ ++++ FS                     
Sbjct: 200 GGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHE 259

Query: 295 -DQVMVSKLFQLMRAKG------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
            D  + + L ++    G            V  D+++W ++I GL      +EA + + +M
Sbjct: 260 SDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQM 319

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             +G  P   T   +L AC ++A +  GKEIH      G   D+ V++AL+ MY++CG I
Sbjct: 320 QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSI 379

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
            +AR +FDKM  ++ ++W +MI G A  G+  EA+ ++ +M++   + + +++T++L AC
Sbjct: 380 KDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNAC 439

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
                +E G+R+   + E    +    H    +V++    G + +A ++   M  + D+ 
Sbjct: 440 SSPAALEWGRRIHQQVVEAG--LATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIV 496

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPE 550
            + A++G    H    L + A K    L+ E
Sbjct: 497 AYNAMIGGYAAH---NLGKEALKLFDRLQEE 524



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 205/432 (47%), Gaps = 49/432 (11%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +   AL  GK +H+++  +G      +   LI+ Y+ C +I  AR++FD++ + ++  W 
Sbjct: 339 VNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWT 398

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+ G  A+ G+  EA+TV+ EM   G++ N     S+L AC   + +  G +IH  V++ 
Sbjct: 399 AMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA 458

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
              TDA V ++L++MYS CGSV+ A++VFD M+++DIVA NAM+ GY    L  EAL L 
Sbjct: 459 GLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLF 518

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-------------- 314
           + +    +KP+ VT+  +++  + SG      ++  L+R  G   D              
Sbjct: 519 DRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKC 578

Query: 315 -----------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
                            V+SW ++I G   +    +A   F+ M  +G  P   T  S+L
Sbjct: 579 GSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLL 638

Query: 358 PACASAANMRRGKEI-----HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
            AC+ A  +  G+          AI+  +E   H    +VD+  + G + EA  L   M 
Sbjct: 639 SACSHAGLLEEGRRYFCSMSQDFAIIPTIE---HY-GCMVDLLGRAGQLDEAEALIKTMP 694

Query: 413 -ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV----GLVE 467
            + NT  W +++  C  HG    A       E   KLD L    V  A  H+    G+ +
Sbjct: 695 FQANTRIWGALLGACRIHGNVPVA---ERAAESSLKLD-LDNAVVYVALSHMYAAAGMWD 750

Query: 468 LGQRLFNMMQEK 479
              +L  +M+++
Sbjct: 751 SAAKLRKLMEQR 762



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 198/408 (48%), Gaps = 44/408 (10%)

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
           AV V   +  QG + N      +LK C  + D+  G ++H  +++H    D + V++LI+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 223 MYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           MY +CGS+E+A++V+ ++  +E+ + + NAMV GY+Q G   +AL L+ ++    + P+ 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 281 VT---------------W--------------------NTLISGFSKSGDQVMVSKLFQL 305
            T               W                    N +++ ++K G      ++F  
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  K     VVSWT  I G      ++ AF+ F++M  +G  P   T  S+L A +S A 
Sbjct: 187 MEKK----SVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           ++ GK +H   +  G E D  V +ALV MYAKCG   + R +F+K+  R+ + WN+MI G
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A  GY +EA E++NQM+    + + +++  +L AC +   +  G+ + + +  K     
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRV-AKAGFTS 361

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                  ++ +  R G + +A  +   M    D+  W A++G     G
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMIGGLAKSG 408



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 10/230 (4%)

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           D A D  + +  QG    S+    +L  C    ++  G+++H   I      D +  +AL
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 392 VDMYAKCGFISEARTLFDKMS--ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           ++MY +CG I EAR ++ K+S  ER   +WN+M+ G   +GY ++A++L  QM++     
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 449 DHLSFTAVLTACCHVGLVELGQRL-FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
           D  +  + L++C   G +E G+ + F  MQ       +  +  C++++  + G + EA E
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVAN--CILNMYAKCGSIEEARE 182

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           +   M  +  +  W   +G   + G    +E A +   ++E E    N +
Sbjct: 183 VFDKME-KKSVVSWTITIGGYADCGR---SETAFEIFQKMEQEGVVPNRI 228


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/510 (36%), Positives = 266/510 (52%), Gaps = 71/510 (13%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  + +H    VSG    + + + L+  Y +C  I  A  +FD + + ++  W AL  
Sbjct: 129 ALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVA 188

Query: 153 AYARRG-----------------------------------YHQEAVTVFHEMHIQGLKQ 177
           AYAR+G                                    + EAV +F +MH++G + 
Sbjct: 189 AYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEP 248

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +   I SVL A G L D+  G  IH  V+K    +D  V S+LIDMY KC    +  +VF
Sbjct: 249 DGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVF 308

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           D+M   D+ + NA + G  + G    +L                                
Sbjct: 309 DQMDHMDVGSCNAFIFGLSRNGQVESSL-------------------------------- 336

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              +LF+ ++ +G+E +VVSWTS+I+    N  + EA + F+EM   G  P S TI  +L
Sbjct: 337 ---RLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLL 393

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           PAC + A +  GK  H  ++  G+  D++V SAL+DMYAKCG I  +R  FD +  +N V
Sbjct: 394 PACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLV 453

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WN++I G A HG   EA+E+F+ M+   +K D +SFT VL+AC   GL E G   FN M
Sbjct: 454 CWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSM 513

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             KY I  R EHYACMV LL RAG+L +AY MI+ M   PD  VWGALL +C+ H N+ L
Sbjct: 514 SSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSL 573

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            E+AA+ L ELEP +  N +LL+++YA+ G
Sbjct: 574 GEVAAEKLFELEPSNPGNYILLSNIYASKG 603



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 44/453 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L   +  HA ++ +GL   T +ATKL++ Y        A ++ D +P+ N+  +  L  
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A+++      A++ F +M  +GL  +  V+PS +KAC  LS +    ++H +     F +
Sbjct: 88  AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS 147

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D+FV SSL+ MY KC  +  A +VFD M E D+V+ +A+V+ Y ++G   EA  L  E+G
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V+PN+++WN +I+GF+ SG       +F  M  +G EPD                  
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD------------------ 249

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
                              TISS+LPA     ++  G  IHG  I  G+  D  V SAL+
Sbjct: 250 -----------------GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALI 292

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           DMY KC   SE   +FD+M   +  + N+ IFG + +G  + ++ LF Q++++  +L+ +
Sbjct: 293 DMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVV 352

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA-----GRLAEAY 506
           S+T+++  C   G       LF  MQ    + P +    C++   G       G+ A  +
Sbjct: 353 SWTSMIACCSQNGRDIEALELFREMQIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHCF 411

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
            + + +ST  D++V  AL+      G I+ + I
Sbjct: 412 SLRRGIST--DVYVGSALIDMYAKCGRIQASRI 442



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 33/179 (18%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           ++ A++ + ++ H   +  G+  D H+ + L+  YA     ++A  + D + E N  +++
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFS 83

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           ++I+  +       A+  F+QM  R  + D+    + + AC  +  ++  +++  +    
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS 143

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
                 +   + +V +  +  ++ +A+ +   M  EPD+  W AL+ A    G ++ A+
Sbjct: 144 -GFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDEAK 200


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 169/506 (33%), Positives = 271/506 (53%), Gaps = 41/506 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH  ++VSG+     I   L++ Y++C     A  LF  + + +   W  +   Y +
Sbjct: 258 GVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQ 317

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  +E++T F+EM   G+  +     S+L +     ++   ++IH  +++HS   D F+
Sbjct: 318 SGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFL 377

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+LID Y KC  V  A+ +F +    D+V   AM+SGY+  GL  ++L +   +   ++
Sbjct: 378 TSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437

Query: 277 KPNVVTWNTL-----------------------------------ISGFSKSGDQVMVSK 301
            PN +T  ++                                   I  ++K G   +  +
Sbjct: 438 SPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYE 497

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F+ +  +    D+VSW S+I+    +     A D F++M   G C    +IS+ L ACA
Sbjct: 498 IFERLSKR----DIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACA 553

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           +  +   GK IHG  I   +  D++  S L+DMYAKCG +  A  +F  M E+N V+WNS
Sbjct: 554 NLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNS 613

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +I  C NHG   +++ LF++M E+  +  D ++F  ++++CCHVG V+ G R F  M E 
Sbjct: 614 IIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTED 673

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y I P+ EHYAC+VDL GRAGRL EAYE +K+M   PD  VWG LLGAC+ H N+ELAE+
Sbjct: 674 YGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEV 733

Query: 540 AAKHLSELEPESAANNMLLTDLYANA 565
           A+  L +L+P ++   +L+++ +ANA
Sbjct: 734 ASSKLMDLDPSNSGYYVLISNAHANA 759



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 217/453 (47%), Gaps = 34/453 (7%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +A+ LI  Y E   I     LFD + + +   W  +   YA+ G     +  F  M +  
Sbjct: 175 VASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQ 234

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +  N      VL  C     I  G ++H LV+      +  + +SL+ MYSKCG  + A 
Sbjct: 235 ISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDAS 294

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK-- 292
           K+F  M   D V  N M+SGYVQ GL  E+L    E+ +  V P+ +T+++L+   SK  
Sbjct: 295 KLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFE 354

Query: 293 -----------------SGDQVMVSKLFQ-LMRAKGV-----------EPDVVSWTSVIS 323
                            S D  + S L     + +GV             DVV +T++IS
Sbjct: 355 NLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMIS 414

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G +HN    ++ + F+ ++     P   T+ SILP       ++ G+E+HG  I  G + 
Sbjct: 415 GYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDN 474

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
             ++  A++DMYAKCG ++ A  +F+++S+R+ V+WNSMI  CA       AI++F QM 
Sbjct: 475 RCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMG 534

Query: 444 ERKK-LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
                 D +S +A L+AC ++     G+ +   M  K+ +       + ++D+  + G L
Sbjct: 535 VSGICYDCVSISAALSACANLPSESFGKAIHGFMI-KHSLASDVYSESTLIDMYAKCGNL 593

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             A  + KTM  E ++  W +++ AC NHG ++
Sbjct: 594 KAAMNVFKTM-KEKNIVSWNSIIAACGNHGKLK 625



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 226/478 (47%), Gaps = 44/478 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--EIPKTNIHRWIALT 151
           L+ GK +HA LIV+ ++  +    +++  Y  C +      +F   ++ +++I  W ++ 
Sbjct: 51  LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            ++ R G   +A+  + +M   G+  ++   P ++KAC  L +    + +   V      
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMD 170

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            + FV SSLI  Y + G ++   K+FD +++KD V  N M++GY + G     +     +
Sbjct: 171 CNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVM 230

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
              ++ PN VT+                                   N+L+S +SK G  
Sbjct: 231 RMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRF 290

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              SKLF++M       D V+W  +ISG V +   +E+   F EM+S G  P + T SS+
Sbjct: 291 DDASKLFRMMS----RADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSL 346

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LP+ +   N+   K+IH   +   +  D+ + SAL+D Y KC  +S A+ +F + +  + 
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V + +MI G  ++G   +++E+F  + + K   + ++  ++L     +  ++LG+ L   
Sbjct: 407 VVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGF 466

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + +K     R      ++D+  + GR+  AYE+ + +S   D+  W +++  C    N
Sbjct: 467 IIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKR-DIVSWNSMITRCAQSDN 522



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 134/270 (49%), Gaps = 5/270 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ LH  +I  G      I   +I  Y +C  ++ A  +F+ + K +I  W ++  
Sbjct: 456 ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMIT 515

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+      A+ +F +M + G+  +   I + L AC +L     G+ IH  ++KHS  +
Sbjct: 516 RCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLAS 575

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-I 271
           D +  S+LIDMY+KCG+++ A  VF  M EK+IV+ N++++     G   ++L L  E +
Sbjct: 576 DVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMV 635

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
               ++P+ +T+  +IS     GD     + F+ M    G++P    +  V+        
Sbjct: 636 EKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGR 695

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             EA++T K M    F P +    ++L AC
Sbjct: 696 LTEAYETVKSM---PFPPDAGVWGTLLGAC 722



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 146/313 (46%), Gaps = 42/313 (13%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD--EMVE 242
           +L+AC + + +  G+++H+ ++ +S   D++    ++ MY+ CGS     K+F   ++  
Sbjct: 41  LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------- 283
             I   N+++S +V+ GL  +AL    ++    V P+V T+                   
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160

Query: 284 ----------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                           ++LI  + + G   + SKLF     + ++ D V W  +++G   
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFD----RVLQKDCVIWNVMLNGYAK 216

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
               D     F  M      P + T   +L  CAS   +  G ++HG  +V GV+ +  +
Sbjct: 217 CGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSI 276

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
           +++L+ MY+KCG   +A  LF  MS  +TVTWN MI G    G  +E++  F +M     
Sbjct: 277 KNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336

Query: 448 L-DHLSFTAVLTA 459
           L D ++F+++L +
Sbjct: 337 LPDAITFSSLLPS 349



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/374 (19%), Positives = 163/374 (43%), Gaps = 42/374 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+  K +H  ++   ++    + + LI  Y +C+ +  A+ +F +    ++  + A+   
Sbjct: 356 LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G + +++ +F  +    +  N   + S+L   G L  +  G ++H  ++K  F   
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNR 475

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             +  ++IDMY+KCG +  A ++F+ + ++DIV+ N+M++   Q    + A+++  ++G 
Sbjct: 476 CNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGV 535

Query: 274 PRV-----------------------------------KPNVVTWNTLISGFSKSGDQVM 298
             +                                     +V + +TLI  ++K G+   
Sbjct: 536 SGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKA 595

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSIL 357
              +F+ M+    E ++VSW S+I+   ++    ++   F EM+ + G  P   T   I+
Sbjct: 596 AMNVFKTMK----EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEII 651

Query: 358 PACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            +C    ++  G +         G++      + +VD++ + G ++EA      M    +
Sbjct: 652 SSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPD 711

Query: 416 TVTWNSMIFGCANH 429
              W +++  C  H
Sbjct: 712 AGVWGTLLGACRLH 725



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           +S +L AC++   +R+GK++H   IV  + GD +    ++ MYA CG  S+   +F ++ 
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 413 ERNTV--TWNSMIFGCANHGYCDEAIELFNQM 442
            R +    WNS+I     +G  ++A+  + +M
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKM 129


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 183/476 (38%), Positives = 280/476 (58%), Gaps = 11/476 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L+ GK   A  +  G+A    ++ + ++  Y +   I  AR LFD +P+ N+  W A+  
Sbjct: 188 LRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARSLFDRMPERNVITWTAMID 247

Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            Y + G+ ++   +F  M  +G ++ N   +  + +AC        G +IH L+ +    
Sbjct: 248 GYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLE 307

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ +SLI MYSK G + +AK VF  M  KD V+ N++++G VQR   +EA  L E++
Sbjct: 308 FDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKM 367

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  ++V+W  +I GFS  G+     +LF +M     E D ++WT++IS  V N   
Sbjct: 368 ----PGKDMVSWTDMIKGFSGKGEISKCVELFGMMP----EKDDITWTAMISAFVSNGYY 419

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F +ML +  CP S T SS+L A AS A++  G +IHG  + M +  DL V+++L
Sbjct: 420 EEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSL 479

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
           V MY KCG  ++A  +F  +SE N V++N+MI G + +G+  EA++LF+ +E   K+ + 
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNG 539

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F A+L+AC HVG V+LG + F  M+  Y I P  +HYACMVDL GR+G L EAY +I 
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLIS 599

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           TM  EP   VWG+LL A K H  ++LAE+AAK L ELEP+SA   ++L+ LY+  G
Sbjct: 600 TMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSMVG 655



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 178/358 (49%), Gaps = 21/358 (5%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           N+  A  +F ++   +I  W A+  AYA  G   +A  VF EM ++       +I +++K
Sbjct: 65  NLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATTSYNAMITAMIK 124

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK--DI 245
              +  D+G   ++   + +     +A   +++I  + + G  ++A+ ++ E   K  D 
Sbjct: 125 ---NKCDLGKAYELFCDIPEK----NAVSYATMITGFVRAGRFDEAECLYAETPVKFRDP 177

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           VA N ++SGY++ G   EA+ + E +        VV++++++ G+ K G  +    LF  
Sbjct: 178 VASNVLLSGYLRVGKWNEAVRVFEGMAVKE----VVSYSSMVDGYCKMGRILDARSLFDR 233

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAA 364
           M     E +V++WT++I G       ++ F  F  M  +G     S T++ +  AC    
Sbjct: 234 MP----ERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFF 289

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
             R G +IHG    M +E DL + ++L+ MY+K G++ EA+ +F  M  +++V+WNS+I 
Sbjct: 290 RYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLIT 349

Query: 425 GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           G        EA ELF +M  +   D +S+T ++      G +     LF MM EK  I
Sbjct: 350 GLVQREQISEAYELFEKMPGK---DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDDI 404



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 129/285 (45%), Gaps = 21/285 (7%)

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           I   N+ +S   + G   EA    E I       ++V+WN +IS ++++G      ++F 
Sbjct: 50  IFQCNSQISKLARNGNLQEA----EAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFD 105

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCN-DEAFDTFKEMLSQGFCPTSATISSILPACASA 363
            M  +       S+ ++I+ ++ N C+  +A++ F ++  +     + + ++++     A
Sbjct: 106 EMPVRAT----TSYNAMITAMIKNKCDLGKAYELFCDIPEK----NAVSYATMITGFVRA 157

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
                 + ++    V     D    + L+  Y + G  +EA  +F+ M+ +  V+++SM+
Sbjct: 158 GRFDEAECLYAETPVKFR--DPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMV 215

Query: 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
            G    G   +A  LF++M ER   + +++TA++      G  E G  LF  M+++  + 
Sbjct: 216 DGYCKMGRILDARSLFDRMPER---NVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVR 272

Query: 484 PRTEHYACMVDLLGRAGRLAEAYE---MIKTMSTEPDLFVWGALL 525
             +   A M        R  E  +   ++  M  E DLF+  +L+
Sbjct: 273 VNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLI 317


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 187/503 (37%), Positives = 269/503 (53%), Gaps = 71/503 (14%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           + LHA  +VSGLA    +A+ L+  Y        AR +FD +P+ N+  W AL   Y+ R
Sbjct: 37  RALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSAR 96

Query: 158 GYHQ-----------------------------------EAVTVFHEMHIQGLKQNIFVI 182
           G  +                                   +AVT    MH +G   +   +
Sbjct: 97  GDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGV 156

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
              L A G + ++  G+++H  V+K     DA VV++LIDMY KCG  ++  +VF E   
Sbjct: 157 SCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSH 216

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
            D+ + NA                                   L++G S++        L
Sbjct: 217 MDVASCNA-----------------------------------LVAGLSRNAQVSEALLL 241

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+    +GVE +VVSWTS+++  V N  + EA D F+ M S G  P S TI  +LPA A+
Sbjct: 242 FREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFAN 301

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A +  G+  H  ++  G   D++V SALVDMYAKCG    ART+FD M  RN V+WN+M
Sbjct: 302 VAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAM 361

Query: 423 IFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A HG    A++LF  M++ ++K D ++FT VL AC   GL E G+R FN MQ+ + 
Sbjct: 362 IGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHG 421

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I PR EHYACMV LLGR+G+L EAY++I  M  EPD  +WG+LLG+C+ +GN+ LAE+AA
Sbjct: 422 ISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAA 481

Query: 542 KHLSELEPESAANNMLLTDLYAN 564
           + L +LEP +A N +LL+++YA+
Sbjct: 482 EKLFQLEPGNAGNYVLLSNIYAS 504



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 47/222 (21%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+  H   +  G      + + L+  Y +C    HAR +FD +P  N+  W A+ G
Sbjct: 304 ALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIG 363

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA  G    AV +F  M     K ++     VL AC                       
Sbjct: 364 GYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGAC----------------------- 400

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN-----AMVSGYVQRGLATEALNL 267
                       S+ G  E+ ++ F+EM +   ++        MV+   + G   EA +L
Sbjct: 401 ------------SQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDL 448

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGD----QVMVSKLFQL 305
           + E+     +P+   W +L+      G+    +V   KLFQL
Sbjct: 449 INEM---PFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQL 487


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/487 (36%), Positives = 273/487 (56%), Gaps = 8/487 (1%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   +E  I+ ++L   K +H   + +     + +  KL   Y  C  +  AR LFDEIP
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             ++  W  +  AYA  G    A+ ++H M   G++ N +  P VLKAC  L  I  G +
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IHS        +D FV ++L+D Y+KCG + +A+++F  M  +D+VA NAM++G    GL
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
             +A+ L+ ++    + PN    +T++         +   K+F +M   GV  + VSW++
Sbjct: 191 CDDAVQLIMQMQEEGICPNS---STIVGVLPTCQCLLYARKIFDVM---GVRNE-VSWSA 243

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +I G V + C  EA D F+ M   G  P   T+  +LPAC+  A ++ G   HG  IV G
Sbjct: 244 MIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRG 303

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
              D  + +AL+DMY+KCG IS AR +F++M   + V+WN+MI G   HG   EA+ LF+
Sbjct: 304 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH 363

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
            +     K D ++F  +L++C H GLV  G+  F+ M   + I+PR EH  CMVD+LGRA
Sbjct: 364 DLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRA 423

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G + EA+  I+ M  EPD+ +W ALL AC+ H NIEL E  +K +  L PES  N +LL+
Sbjct: 424 GLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLS 483

Query: 560 DLYANAG 566
           ++Y+ AG
Sbjct: 484 NIYSAAG 490


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/476 (36%), Positives = 287/476 (60%), Gaps = 11/476 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L+ G++  A  I  G+     I+ + ++  Y +   I HAR LF+ +P+ N+  W A+  
Sbjct: 249 LKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMID 308

Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            + + G ++    +F  M  +G +K N   +  + +AC    +   G ++H LV +  F 
Sbjct: 309 GHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFE 368

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ +++I MY +   V +A+K+FD M  KD+V+ NA+++GYVQ     E   L E+ 
Sbjct: 369 FDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKT 428

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + +V++W T+I+GFS  G      +LF++M  +    D ++WT+VISG V N   
Sbjct: 429 Q----QKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ----DDIAWTAVISGFVGNGEY 480

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F EML +   P   T+SS+L A A  A + +G +IH   + MG+E DL ++++L
Sbjct: 481 EEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSL 540

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           V MY KCG +++   +F  ++  N V++NSMI G A +G+ +EA+ELF++M  E +K + 
Sbjct: 541 VSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNE 600

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F  VL+AC HVGL+E G   F  M+  Y+I P   HYAC+VDLLGRAG L +A ++I+
Sbjct: 601 ITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIR 660

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +M  EP   VWGALLGA + H  +++A++AA+ + +LEP++AA   +L+ LY++AG
Sbjct: 661 SMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAG 716



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 192/413 (46%), Gaps = 65/413 (15%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++G +  A+ I S +     I+ T ++T Y E  +I  AR +F+++P+     + A+  A
Sbjct: 122 RNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITA 181

Query: 154 YARRGYHQ--EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF- 210
           Y R       EA  +F EM     ++N     +++     L+  G  +    L L+    
Sbjct: 182 YTRSNPMMIGEASKLFAEMR----ERNSISYAAMITG---LARAGMVDNAEELYLETPVE 234

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D    ++LI  Y K G +E+A ++F+ M E+D+++ ++MV GY ++G    A  L E 
Sbjct: 235 WRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFER 294

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
           +     + NVVTW  +I G  K G                                   C
Sbjct: 295 M----PERNVVTWTAMIDGHMKMG-----------------------------------C 315

Query: 331 NDEAFDTFKEMLSQGFC---PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
            +  F  F  M  +GF    PT+ T+  +  AC+     + G ++HG    MG E D+ +
Sbjct: 316 YEVGFGLFLRMRKEGFVKVNPTTLTV--MFEACSEFGEYKEGIQMHGLVSRMGFEFDVFL 373

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            +A++ MY +  F+ EAR +FD M+ ++ V+WN++I G   +   +E   LF + +++  
Sbjct: 374 GNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQK-- 431

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
            D +S+T ++T   + G  ++G+ +     E +++MP+ +  A    + G  G
Sbjct: 432 -DVISWTTMITGFSNKG--KMGKSI-----ELFRMMPKQDDIAWTAVISGFVG 476



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 59/323 (18%)

Query: 212 TDAFVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           T  F+V   S I  + + G +++A+ +F  M  K+ ++  AM++ Y + G   +A  + E
Sbjct: 106 TTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFE 165

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVM--VSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
           ++     +    ++N +I+ +++S   ++   SKLF  MR    E + +S+ ++I+GL  
Sbjct: 166 KMP----QRTTASYNAMITAYTRSNPMMIGEASKLFAEMR----ERNSISYAAMITGLAR 217

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
               D A + + E            +    P C++A                        
Sbjct: 218 AGMVDNAEELYLE----------TPVEWRDPVCSNA------------------------ 243

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
              L+  Y K G + EA  +F+ M ER+ ++W+SM+ G    G    A ELF +M ER  
Sbjct: 244 ---LISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPER-- 298

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEK--YKIMPRTEHYACMVDLLGRAGRLAEA 505
            + +++TA++     +G  E+G  LF  M+++   K+ P T     M +     G   E 
Sbjct: 299 -NVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTT--LTVMFEACSEFGEYKEG 355

Query: 506 YEM---IKTMSTEPDLFVWGALL 525
            +M   +  M  E D+F+  A++
Sbjct: 356 IQMHGLVSRMGFEFDVFLGNAII 378


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/509 (35%), Positives = 276/509 (54%), Gaps = 40/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +++G  LH  +I SG      +A  +IT Y++C N+  AR +FD +P+T+   W  L   
Sbjct: 294 VRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAG 353

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G+  EAV +F  M   G+K +     S L +      +   +++HS +++H    D
Sbjct: 354 YVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFD 413

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            ++ S+L+D+Y K G VE A K F +    D+    AM+SGYV  GL  EALNL   +  
Sbjct: 414 VYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQ 473

Query: 274 PRVKPNVVTWNTLISG-----------------------------------FSKSGDQVM 298
             + PN +T  +++                                     ++KSG   +
Sbjct: 474 EGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDL 533

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             + F+ M  K    D V W  +I     N   + A D F++M + G    S ++S+ L 
Sbjct: 534 AYQFFRRMPVK----DSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLS 589

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA+   +  GKE+H   +      D  V S L+DMY+KCG ++ AR++FD M  +N V+
Sbjct: 590 ACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVS 649

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I    NHG   E ++LF++M E   + DH++F  +++AC H GLV+ G   F  M 
Sbjct: 650 WNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMT 709

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E+Y I  R EH+ACMVDL GRAGRL EA++ IK+M   PD   WG+LLGAC+ HGN+ELA
Sbjct: 710 EEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELA 769

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++A+KHL EL+P ++   +LL++++A AG
Sbjct: 770 KLASKHLVELDPNNSGYYVLLSNVHAGAG 798



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 224/454 (49%), Gaps = 42/454 (9%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I + LI  YT+   IH A+ LFDE+P  +   W  +   Y + G    A+  F EM    
Sbjct: 214 IGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSC 273

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +K N      +L  C     +  G ++H LV++  F +D  V +++I MYSKCG++  A+
Sbjct: 274 VKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDAR 333

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------- 283
           K+FD M + D V  N +++GYVQ G   EA+ L + + T  VK + +T+           
Sbjct: 334 KIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSG 393

Query: 284 ------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                                   + L+  + K GD  M  K FQ    +    DV   T
Sbjct: 394 SLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQ----QNTLVDVAVCT 449

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++ISG V N  N EA + F+ ++ +G  P   T++S+LPACA+ A+++ GKE+H   +  
Sbjct: 450 AMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKK 509

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           G+E    V S++  MYAK G +  A   F +M  +++V WN MI   + +G  + AI+LF
Sbjct: 510 GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLF 569

Query: 440 NQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
            QM     K D +S +A L+AC +   +  G+ L +    +   +  T   + ++D+  +
Sbjct: 570 RQMGTSGTKFDSVSLSATLSACANYPALYYGKEL-HCFVVRNSFISDTFVASTLIDMYSK 628

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            G+LA A  +   M  + ++  W +++ A  NHG
Sbjct: 629 CGKLALARSVFDMMDWKNEV-SWNSIIAAYGNHG 661



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 223/484 (46%), Gaps = 52/484 (10%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           Q  + +HA+++V G+     + ++++  Y  C++      LF  +       W  L   +
Sbjct: 93  QQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGF 152

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           +  G    A+  F  M    +  + +  P V+KACG L+++   + +H L     F  D 
Sbjct: 153 SMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDL 212

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           F+ SSLI +Y+  G +  AK +FDE+  +D +  N M++GYV+ G    AL   +E+   
Sbjct: 213 FIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNS 272

Query: 275 RVKPNVVTW-----------------------------------NTLISGFSKSGDQVMV 299
            VKPN V++                                   NT+I+ +SK G+    
Sbjct: 273 CVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDA 332

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            K+F +M     + D V+W  +I+G V N   DEA   FK M++ G    S T +S LP+
Sbjct: 333 RKIFDIMP----QTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPS 388

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
              + +++  KE+H   +  GV  D++++SALVD+Y K G +  A   F + +  +    
Sbjct: 389 VLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVC 448

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            +MI G   +G   EA+ LF  + +E    + L+  +VL AC  +  ++LG+ L      
Sbjct: 449 TAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKEL------ 502

Query: 479 KYKIMPRTEHYACMVD-----LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
              I+ +     C V      +  ++GRL  AY+  + M  + D   W  ++ +   +G 
Sbjct: 503 HCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVK-DSVCWNLMIVSFSQNGK 561

Query: 534 IELA 537
            ELA
Sbjct: 562 PELA 565



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK LH  ++  GL  + Q+ + +   Y +   +  A   F  +P  +   W  +  
Sbjct: 495 SLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIV 554

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           ++++ G  + A+ +F +M   G K +   + + L AC +   +  G+++H  V+++SF +
Sbjct: 555 SFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFIS 614

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV S+LIDMYSKCG +  A+ VFD M  K+ V+ N++++ Y   G   E L+L  E+ 
Sbjct: 615 DTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMV 674

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN- 331
              ++P+ VT+  ++S    +G   +V +     R    E  + +     + +V  +   
Sbjct: 675 EAGIQPDHVTFLVIMSACGHAG---LVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRA 731

Query: 332 ---DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
               EAFDT K M    F P + T  S+L AC    N+   K
Sbjct: 732 GRLHEAFDTIKSM---PFTPDAGTWGSLLGACRLHGNVELAK 770



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 166/399 (41%), Gaps = 41/399 (10%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           +++    L    ++  +   ++  +L+  K +H+ ++  G+     + + L+  Y +  +
Sbjct: 370 MVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGD 429

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +  A   F +    ++    A+   Y   G + EA+ +F  +  +G+  N   + SVL A
Sbjct: 430 VEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPA 489

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  L+ +  G+++H  +LK        V SS+  MY+K G ++ A + F  M  KD V  
Sbjct: 490 CAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCW 549

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------- 283
           N M+  + Q G    A++L  ++GT   K + V+                          
Sbjct: 550 NLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVR 609

Query: 284 ----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                     +TLI  +SK G   +   +F +M  K    + VSW S+I+   ++    E
Sbjct: 610 NSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWK----NEVSWNSIIAAYGNHGRPRE 665

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI-VMGVEGDLHVRSALV 392
             D F EM+  G  P   T   I+ AC  A  +  G     C     G+   +   + +V
Sbjct: 666 CLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMV 725

Query: 393 DMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
           D+Y + G + EA      M    +  TW S++  C  HG
Sbjct: 726 DLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHG 764


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 268/510 (52%), Gaps = 71/510 (13%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--------------- 137
           A ++GK +H    VSGL     +   L   Y  C  +  AR +FD               
Sbjct: 131 AFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLC 190

Query: 138 ----------------EIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
                           E+ K+    NI  W  +   + R GYH+EAV +F +MH  G   
Sbjct: 191 GYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCP 250

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +   + SVL + G   ++  G +IH  V+K     D  V+S+++DMY K G V    K+F
Sbjct: 251 DQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLF 310

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           DE    +    NA ++G  + GL  +AL                                
Sbjct: 311 DEFEMMETGVCNAYITGLSRNGLVDKAL-------------------------------- 338

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F L + + +E +VVSWTS+I+G   N  + EA + F+EM   G  P   TI S+L
Sbjct: 339 ---EMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSML 395

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           PAC + A +  G+  HG A+ + +  D+HV SAL+DMYAKCG I  ++ +F+ M  +N V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLV 455

Query: 418 TWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WNS++ G + HG   E + +F   M  R K D +SFT++L+AC  VGL + G + FNMM
Sbjct: 456 CWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMM 515

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            E+Y I PR EHY+CMV+LLGRAG+L EAY++IK +  EPD  VWGALL +C+   N++L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AEIAA+ L  LEPE+    +L++++YA  G
Sbjct: 576 AEIAAQKLFHLEPENPGTYVLMSNIYAAKG 605



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 36/378 (9%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           HA+++ SG      I+ KLI  Y+     + A ++   IP   ++ + +L  A  +    
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
            +++ VF  M   GL  +  V+P++ K C  LS    G++IH +        DAFV  SL
Sbjct: 98  SQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSL 157

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
             MY +CG +  A+KVFD M EKD+V  +A++ GY ++G   E + ++ E+    ++PN+
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNI 217

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           V+WN ++SGF++SG       +FQ M   G  PD V                        
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQV------------------------ 253

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
                      T+SS+LP+   + N+  G++IHG  I  G+  D  V SA++DMY K G 
Sbjct: 254 -----------TVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGH 302

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           +     LFD+     T   N+ I G + +G  D+A+E+F   +E+K +L+ +S+T+++  
Sbjct: 303 VYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAG 362

Query: 460 CCHVGLVELGQRLFNMMQ 477
           C   G       LF  MQ
Sbjct: 363 CAQNGKDIEALELFREMQ 380


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 289/506 (57%), Gaps = 34/506 (6%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + G ++HA+ ++SG      +   L+  Y  C  +  AR +FD + +  +  W  +   Y
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGY 199

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            + G  +EA+ VF  M  +G++ +   + SVL  C +L ++  G ++H+LV   + G D 
Sbjct: 200 FKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDI 259

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            V +SL+DMY+KCG++++A+ +F EM ++D+V+   M++GY+  G A  AL L + +   
Sbjct: 260 SVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFE 319

Query: 275 RVKPNVVTWNTLISGFS------------------KSGDQVMVSKLFQLMRAK------- 309
            VKPN VT  +++S  +                  K   +V+V      M AK       
Sbjct: 320 SVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLS 379

Query: 310 ------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                   +     W ++ISG +HN  + +A + FK+ML +   P  AT++S+LPA A  
Sbjct: 380 FRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFL 439

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNS 421
            ++++ + +HG  I  G    + V + L+D+Y+KCG +  A  +F+ +   +++ +TW++
Sbjct: 440 TDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSA 499

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G   HG+ + AI LF+QM +   K + ++FT++L AC H GLV+ G  LF  M E  
Sbjct: 500 IIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDN 559

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           ++  RT+HY C++DLLGRAGRL EAYE+I+TM+  P+  VWGALLG+C  H N+EL E+A
Sbjct: 560 QMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVA 619

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           AK L ELEP +  N +LL ++Y+  G
Sbjct: 620 AKWLFELEPGNTGNYVLLANIYSAVG 645



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 247/512 (48%), Gaps = 50/512 (9%)

Query: 70  ISRSFHL--SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLT---QIATKLITFYT 124
           +S+S HL  + A Y   ++     +++ + K +HA  I  GL        + + L   Y 
Sbjct: 8   LSKSKHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYA 67

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIP 183
                 HAR LFDE+   ++  W A+   Y   G   +A+ +F +M   G +  + +  P
Sbjct: 68  MFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYP 127

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
            V+KACG       G  IH+  +   F +DAFV +SL+ MY  CG +E A++VFD M E+
Sbjct: 128 FVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRER 187

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT--------------------- 282
            +V+ N M++GY + G   EAL + + +    ++P+  T                     
Sbjct: 188 TLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVH 247

Query: 283 --------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                         WN+L+  ++K G+      +F  M  +    DVVSWT++++G + N
Sbjct: 248 ALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKR----DVVSWTTMMNGYILN 303

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                A    + M  +   P   T++S+L ACAS  +++ G+ +HG AI   +E ++ V 
Sbjct: 304 GDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVE 363

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           +AL+DMYAKC  ++ +  +F K S++ T  WN++I GC ++G   +AIELF QM  E   
Sbjct: 364 TALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVD 423

Query: 448 LDHLSFTAVLTACCHVGLVELGQ-RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
            +  +  ++L A  +  L +L Q R  +    +   + R E    ++D+  + G L  A+
Sbjct: 424 PNDATLNSLLPA--YAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAH 481

Query: 507 EMIKTM-STEPDLFVWGALLGACKNHGNIELA 537
            +   +   + D+  W A++     HG+ E A
Sbjct: 482 NIFNGIPKKDKDIITWSAIIAGYGMHGHGETA 513



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 175/387 (45%), Gaps = 49/387 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L+ G+ +HA + V  L     +   L+  Y +C N+  A+M+F E+ K ++  W  + 
Sbjct: 238 KELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMM 297

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G  + A+ +   M  + +K N   + SVL AC  L  +  G  +H   ++    
Sbjct: 298 NGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLE 357

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++LIDMY+KC +V  + +VF +  ++     NA++SG +  GL+ +A+ L +++
Sbjct: 358 SEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQM 417

Query: 272 GTPRVKPNVVTWNTLI---------------------SGF--------------SKSGDQ 296
               V PN  T N+L+                     SGF              SK G  
Sbjct: 418 LMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSL 477

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +F  +  K  + D+++W+++I+G   +   + A   F +M+  G  P   T +SI
Sbjct: 478 ESAHNIFNGIPKK--DKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSI 535

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVR----SALVDMYAKCGFISEARTLFDKMS 412
           L AC+ A  +  G    G    M  +  + +R    + ++D+  + G + EA  L   M+
Sbjct: 536 LHACSHAGLVDEGL---GLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMA 592

Query: 413 ER-NTVTWNSMIFGCANHGYCDEAIEL 438
            R N   W +++  C  H    E +EL
Sbjct: 593 FRPNHAVWGALLGSCVIH----ENVEL 615


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/476 (36%), Positives = 287/476 (60%), Gaps = 11/476 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L+ G++  A  I  G+     I+ + ++  Y +   I HAR LF+ +P+ N+  W A+  
Sbjct: 170 LKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMID 229

Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            + + G ++    +F  M  +G +K N   +  + +AC    +   G ++H LV +  F 
Sbjct: 230 GHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFE 289

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ +++I MY +   V +A+K+FD M  KD+V+ NA+++GYVQ     E   L E+ 
Sbjct: 290 FDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKT 349

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + +V++W T+I+GFS  G      +LF++M  +    D ++WT+VISG V N   
Sbjct: 350 Q----QKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ----DDIAWTAVISGFVGNGEY 401

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F EML +   P   T+SS+L A A  A + +G +IH   + MG+E DL ++++L
Sbjct: 402 EEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSL 461

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           V MY KCG +++   +F  ++  N V++NSMI G A +G+ +EA+ELF++M  E +K + 
Sbjct: 462 VSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNE 521

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F  VL+AC HVGL+E G   F  M+  Y+I P   HYAC+VDLLGRAG L +A ++I+
Sbjct: 522 ITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIR 581

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +M  EP   VWGALLGA + H  +++A++AA+ + +LEP++AA   +L+ LY++AG
Sbjct: 582 SMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAG 637



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 192/413 (46%), Gaps = 65/413 (15%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++G +  A+ I S +     I+ T ++T Y E  +I  AR +F+++P+     + A+  A
Sbjct: 43  RNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITA 102

Query: 154 YARRGYHQ--EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF- 210
           Y R       EA  +F EM     ++N     +++     L+  G  +    L L+    
Sbjct: 103 YTRSNPMMIGEASKLFAEMR----ERNSISYAAMITG---LARAGMVDNAEELYLETPVE 155

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D    ++LI  Y K G +E+A ++F+ M E+D+++ ++MV GY ++G    A  L E 
Sbjct: 156 WRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFER 215

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
           +     + NVVTW  +I G  K G                                   C
Sbjct: 216 M----PERNVVTWTAMIDGHMKMG-----------------------------------C 236

Query: 331 NDEAFDTFKEMLSQGFC---PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
            +  F  F  M  +GF    PT+ T+  +  AC+     + G ++HG    MG E D+ +
Sbjct: 237 YEVGFGLFLRMRKEGFVKVNPTTLTV--MFEACSEFGEYKEGIQMHGLVSRMGFEFDVFL 294

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            +A++ MY +  F+ EAR +FD M+ ++ V+WN++I G   +   +E   LF + +++  
Sbjct: 295 GNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQK-- 352

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
            D +S+T ++T   + G  ++G+ +     E +++MP+ +  A    + G  G
Sbjct: 353 -DVISWTTMITGFSNKG--KMGKSI-----ELFRMMPKQDDIAWTAVISGFVG 397



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 59/323 (18%)

Query: 212 TDAFVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           T  F+V   S I  + + G +++A+ +F  M  K+ ++  AM++ Y + G   +A  + E
Sbjct: 27  TTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFE 86

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVM--VSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
           ++     +    ++N +I+ +++S   ++   SKLF  MR    E + +S+ ++I+GL  
Sbjct: 87  KM----PQRTTASYNAMITAYTRSNPMMIGEASKLFAEMR----ERNSISYAAMITGLAR 138

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
               D A + + E            +    P C++A                        
Sbjct: 139 AGMVDNAEELYLE----------TPVEWRDPVCSNA------------------------ 164

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
              L+  Y K G + EA  +F+ M ER+ ++W+SM+ G    G    A ELF +M ER  
Sbjct: 165 ---LISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPER-- 219

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEK--YKIMPRTEHYACMVDLLGRAGRLAEA 505
            + +++TA++     +G  E+G  LF  M+++   K+ P T     M +     G   E 
Sbjct: 220 -NVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTT--LTVMFEACSEFGEYKEG 276

Query: 506 YEM---IKTMSTEPDLFVWGALL 525
            +M   +  M  E D+F+  A++
Sbjct: 277 IQMHGLVSRMGFEFDVFLGNAII 299


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 289/506 (57%), Gaps = 34/506 (6%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + G ++HA+ ++SG      +   L+  Y  C  +  AR +FD + +  +  W  +   Y
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGY 199

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            + G  +EA+ VF  M  +G++ +   + SVL  C +L ++  G ++H+LV   + G D 
Sbjct: 200 FKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDI 259

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            V +SL+DMY+KCG++++A+ +F EM ++D+V+   M++GY+  G A  AL L + +   
Sbjct: 260 SVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFE 319

Query: 275 RVKPNVVTWNTLISGFS------------------KSGDQVMVSKLFQLMRAK------- 309
            VKPN VT  +++S  +                  K   +V+V      M AK       
Sbjct: 320 SVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLS 379

Query: 310 ------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                   +     W ++ISG +HN  + +A + FK+ML +   P  AT++S+LPA A  
Sbjct: 380 FRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFL 439

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNS 421
            ++++ + +HG  I  G    + V + L+D+Y+KCG +  A  +F+ +   +++ +TW++
Sbjct: 440 TDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSA 499

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G   HG+ + AI LF+QM +   K + ++FT++L AC H GLV+ G  LF  M E  
Sbjct: 500 IIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDN 559

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           ++  RT+HY C++DLLGRAGRL EAYE+I+TM+  P+  VWGALLG+C  H N+EL E+A
Sbjct: 560 QMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVA 619

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           AK L ELEP +  N +LL ++Y+  G
Sbjct: 620 AKWLFELEPGNTGNYVLLANIYSAVG 645



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 145/512 (28%), Positives = 248/512 (48%), Gaps = 50/512 (9%)

Query: 70  ISRSFHL--SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLT---QIATKLITFYT 124
           +S+S HL  + A Y   ++     +++ + K +HA  I  GL        + + L   Y 
Sbjct: 8   LSKSKHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYA 67

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIP 183
            C    HAR LFDE+   ++  W A+   Y   G   +A+ +F +M   G +  + +  P
Sbjct: 68  MCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYP 127

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
            V+KACG       G  IH+  +   F +DAFV +SL+ MY  CG +E A++VFD M E+
Sbjct: 128 FVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRER 187

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT--------------------- 282
            +V+ N M++GY + G   EAL + + +    ++P+  T                     
Sbjct: 188 TLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVH 247

Query: 283 --------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                         WN+L+  ++K G+      +F  M  +    DVVSWT++++G + N
Sbjct: 248 ALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKR----DVVSWTTMMNGYILN 303

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                A    + M  +   P   T++S+L ACAS  +++ G+ +HG AI   +E ++ V 
Sbjct: 304 GDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVE 363

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           +AL+DMYAKC  ++ +  +F K S++ T  WN++I GC ++G   +AIELF QM  E   
Sbjct: 364 TALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVD 423

Query: 448 LDHLSFTAVLTACCHVGLVELGQ-RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
            +  +  ++L A  +  L +L Q R  +    +   + R E    ++D+  + G L  A+
Sbjct: 424 PNDATLNSLLPA--YAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAH 481

Query: 507 EMIKTM-STEPDLFVWGALLGACKNHGNIELA 537
            +   +   + D+  W A++     HG+ E A
Sbjct: 482 NIFNGIPKKDKDIITWSAIIAGYGMHGHGETA 513



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 175/387 (45%), Gaps = 49/387 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L+ G+ +HA + V  L     +   L+  Y +C N+  A+M+F E+ K ++  W  + 
Sbjct: 238 KELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMM 297

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G  + A+ +   M  + +K N   + SVL AC  L  +  G  +H   ++    
Sbjct: 298 NGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLE 357

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++LIDMY+KC +V  + +VF +  ++     NA++SG +  GL+ +A+ L +++
Sbjct: 358 SEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQM 417

Query: 272 GTPRVKPNVVTWNTLI---------------------SGF--------------SKSGDQ 296
               V PN  T N+L+                     SGF              SK G  
Sbjct: 418 LMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSL 477

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +F  +  K  + D+++W+++I+G   +   + A   F +M+  G  P   T +SI
Sbjct: 478 ESAHNIFNGIPKK--DKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSI 535

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVR----SALVDMYAKCGFISEARTLFDKMS 412
           L AC+ A  +  G    G    M  +  + +R    + ++D+  + G + EA  L   M+
Sbjct: 536 LHACSHAGLVDEGL---GLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMA 592

Query: 413 ER-NTVTWNSMIFGCANHGYCDEAIEL 438
            R N   W +++  C  H    E +EL
Sbjct: 593 FRPNHAVWGALLGSCVIH----ENVEL 615


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/510 (34%), Positives = 283/510 (55%), Gaps = 40/510 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H+ ++ +G      + T L+  Y +C +    R +F+++   ++  W  + G
Sbjct: 360 ALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G  +EA  ++H+M  +G+  N      +L AC + + +  G +IHS V+K  F  
Sbjct: 420 GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++LI MY++CGS++ A+ +F++MV KDI++  AM+ G  + GL  EAL + +++ 
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              +KPN VT+                                   NTL++ +S  G   
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F  M     + D+V++ ++I G   +    EA   F  +  +G  P   T  ++L
Sbjct: 600 DARQVFDRM----TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINML 655

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACA++ ++   KEIH   +  G   D  + +ALV  YAKCG  S+A  +FDKM +RN +
Sbjct: 656 NACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVI 715

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WN++I GCA HG   + ++LF +M+ E  K D ++F ++L+AC H GL+E G+R F  M
Sbjct: 716 SWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSM 775

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
              + I P  EHY CMVDLLGRAG+L E   +IKTM  + +  +WGALLGAC+ HGN+ +
Sbjct: 776 SRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPV 835

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE AA+   +L+P++AA  + L+ +YA AG
Sbjct: 836 AERAAESSLKLDPDNAAVYVALSHMYAAAG 865



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 243/477 (50%), Gaps = 44/477 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H + + + L     +A  ++  Y +C +IH AR +FD++   ++  W  + G
Sbjct: 259 ALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIG 318

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA  G+ + A  +F +M  +G+  N     +VL A    + +  G+ +HS +L     +
Sbjct: 319 GYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHES 378

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L+ MY+KCGS +  ++VF+++V +D++A N M+ G  + G   EA  +  ++ 
Sbjct: 379 DLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQ 438

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              + PN +T+                                   N LIS +++ G   
Sbjct: 439 REGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIK 498

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               LF  M    V  D++SWT++I GL  +    EA   F++M   G  P   T +SIL
Sbjct: 499 DARLLFNKM----VRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSIL 554

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC+S A +  G+ IH   I  G+  D HV + LV+MY+ CG + +AR +FD+M++R+ V
Sbjct: 555 NACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIV 614

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM- 475
            +N+MI G A H    EA++LF++++E   K D +++  +L AC + G +E  + + ++ 
Sbjct: 615 AYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLV 674

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +++ Y  +  T     +V    + G  ++A  +   M  + ++  W A++G C  HG
Sbjct: 675 LKDGY--LSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQHG 728



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/505 (26%), Positives = 242/505 (47%), Gaps = 41/505 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y + ++  I  + L +G+ +H  +I             LI  Y +C +I  AR +++++ 
Sbjct: 144 YMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLN 203

Query: 141 KT--NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
            T   +H W A+   Y + GY +EA+ +  EM   GL         +L +C   S +  G
Sbjct: 204 HTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECG 263

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
            +IH   +K     D  V + +++MY+KCGS+ +A++VFD+M  K +V+   ++ GY   
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV-------------MVS 300
           G +  A  + +++    V PN +T+  +++ FS     K G  V              V 
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 301 KLFQLMRAKG-------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
                M AK              V  D+++W ++I GL      +EA + + +M  +G  
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T   +L AC +   +  G+EIH   +  G   D+ V++AL+ MYA+CG I +AR L
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLL 503

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLV 466
           F+KM  ++ ++W +MI G A  G   EA+ +F  M++   K + +++T++L AC     +
Sbjct: 504 FNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAAL 563

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           + G+R+   + E    +    H A  +V++    G + +A ++   M T+ D+  + A++
Sbjct: 564 DWGRRIHQQVIEAG--LATDAHVANTLVNMYSMCGSVKDARQVFDRM-TQRDIVAYNAMI 620

Query: 526 GACKNHGNIELAEIAAKHLSELEPE 550
           G    H    L + A K    L+ E
Sbjct: 621 GGYAAH---NLGKEALKLFDRLQEE 642



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 200/408 (49%), Gaps = 44/408 (10%)

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
           A+ V   +  QG + N      +LK C  + D+  G ++H  +++H    D + V++LI+
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 223 MYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVEEI--------- 271
           MY +CGS+E+A++V++++   E+ + + NAMV GYVQ G   EAL L+ E+         
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 272 ----------GTP----------------RVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
                      +P                R+  +V   N +++ ++K G      ++F  
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  K V    VSWT +I G      ++ AF+ F++M  +G  P   T  ++L A +  A 
Sbjct: 305 METKSV----VSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAA 360

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           ++ GK +H   +  G E DL V +ALV MYAKCG   + R +F+K+  R+ + WN+MI G
Sbjct: 361 LKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 420

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A  G  +EA E+++QM+    + + +++  +L AC +   +  G+ + + +  K   M 
Sbjct: 421 LAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVV-KDGFMF 479

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                  ++ +  R G + +A  +   M    D+  W A++G     G
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKM-VRKDIISWTAMIGGLAKSG 526



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           D A D  + +  QG    S     +L  C    ++  G+E+H   I      D +  +AL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 392 VDMYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           ++MY +CG I EAR +++K+  +ER   +WN+M+ G   +GY +EA++L  +M++    L
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
              +   +L++C     +E G R  ++   K +++       C++++  + G + EA E+
Sbjct: 243 GRATTMRLLSSCKSPSALECG-REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREV 301

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELA 537
              M T+  +  W  ++G   + G+ E+A
Sbjct: 302 FDKMETKS-VVSWTIIIGGYADCGHSEIA 329


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/486 (37%), Positives = 279/486 (57%), Gaps = 14/486 (2%)

Query: 81  YSERIEIYIRDR---ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
           Y+E  ++    R   A+ +G ++    +V+  ARL  +   L            A  +  
Sbjct: 183 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDAL----------ELAARMSR 232

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
             P+ N+  W  +    +R G  +EA+ V   M  QGL+ +   + S+LK+  +   +  
Sbjct: 233 SGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRH 292

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G +IH   L++    D +  ++L+DMY+KCG ++ A+KVFD +  +++   N++V+GY  
Sbjct: 293 GMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYAN 352

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            G    AL LVE +   R+ P++ TWN LI+G+S +G       L + ++A GV P+VVS
Sbjct: 353 AGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVS 412

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WTS+ISG  HN   +++F    EM   G  P+  T+S +L ACA  A  ++GKE+H  A+
Sbjct: 413 WTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFAL 472

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
               + D+ V +AL+DMY+K G +  A+ +F+ + ++N V  N+M+ G A HG   EAIE
Sbjct: 473 RRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIE 532

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF+ M     K D ++FTA+LTAC  +GLV  G   F+ M+ KY + P TE+YACMVDLL
Sbjct: 533 LFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLL 592

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
            R G L EA + I+    +P    WGALL  C  HGN+ LAE+AA++L  LEP ++AN +
Sbjct: 593 ARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRLEPYNSANYL 652

Query: 557 LLTDLY 562
           L+ +LY
Sbjct: 653 LMMNLY 658



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 153/353 (43%), Gaps = 57/353 (16%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC-QNIHHARMLFD--EIPKTNIHRWIALTGAYAR 156
           LH+  + +GL+R  ++   L+       +    AR+L +  E    +   W       A 
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAE 133

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                EA+ VF EM  +G+ +                    G  +H+  LK +      V
Sbjct: 134 AEEWDEAIAVFREMQARGVPRR------------------RGRAVHAYALKLALDAHPLV 175

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
              L  MY++   V  A +V D M    +V  NA+V+   + GL  +AL L   +     
Sbjct: 176 PGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGP 235

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           +PNV TWNT++SG S+ G       +   M  +G+ PD                      
Sbjct: 236 EPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPD---------------------- 273

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
                        + T+SS+L + A+   +R G EIH   +   +E D++  +ALVDMYA
Sbjct: 274 -------------ATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYA 320

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
           KCG +  A+ +FD +  RN  TWNS++ G AN G  D A+EL   M ++ +LD
Sbjct: 321 KCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALELVELM-KKNRLD 372



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 123/281 (43%), Gaps = 24/281 (8%)

Query: 93  ALQS-GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ALQ  GK LH   +         ++T LI  Y++  ++  A+++F+ I + N+    A+ 
Sbjct: 459 ALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAML 518

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSF 210
              A  G  +EA+ +FH+M   GLK +     ++L AC  +  +  G E    +  K+  
Sbjct: 519 TGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGV 578

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                  + ++D+ ++CG +++A     + +E+  +   A   G +  G +      + E
Sbjct: 579 KPTTENYACMVDLLARCGYLDEAM----DFIERSPIDPGASHWGALLTGCSIHGNLALAE 634

Query: 271 IGTP---RVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
           +      R++P N   +  +++ +           L   M+A+GV+     SW  +  G 
Sbjct: 635 VAARNLFRLEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQG- 693

Query: 326 VHNFCND-----EAFDTFKEML-------SQGFCPTSATIS 354
           +H F  D     E  + ++E++         G+ P ++ I+
Sbjct: 694 IHVFEVDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIA 734



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 100/260 (38%), Gaps = 41/260 (15%)

Query: 342 LSQGFCPTSA-TISSILPACAS--------AANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           L  G  P SA  + S+L  CA             R   ++H  A+  G+  D  V  ALV
Sbjct: 35  LRTGVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALV 94

Query: 393 DMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK--- 446
           D+ A+ G       L  + +E   ++ V WN  +   A     DEAI +F +M+ R    
Sbjct: 95  DLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPR 154

Query: 447 -------------KLDHLSFTAVLTACCHV--GLVELGQRLFNMMQEKYKIMPRTEHYAC 491
                         LD         A  +     V    R+ + M     ++P     AC
Sbjct: 155 RRGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAG-SVVPWNAVVAC 213

Query: 492 MVDLLGRAGRLAEAYEMIKTMS---TEPDLFVWGALLGACKNHG-NIELAEIAAKHLSE- 546
                 R G + +A E+   MS    EP++  W  +L  C  HG + E   + A  L + 
Sbjct: 214 ----CARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQG 269

Query: 547 LEPESAANNMLLTDLYANAG 566
           L P++   + LL  + AN G
Sbjct: 270 LRPDATTVSSLLKSV-ANTG 288


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 280/507 (55%), Gaps = 33/507 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R    G+ LH Q++  G +  + + T L+  Y +C+ +  +R +FDEI   N+  W ++ 
Sbjct: 152 RETDEGRKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMI 210

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y +    +E + +F+ M    ++ N + + S++ AC  L  +  G+ +H  V+K  F 
Sbjct: 211 VGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFD 270

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            ++F+V+ L+D+Y KCG +  A  VFDE+   D+V+  AM+ GY QRG   EAL L  + 
Sbjct: 271 LNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDE 330

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVM-------------------------VSKLFQLM 306
               + PN VT ++++S  +++G   M                          +K   + 
Sbjct: 331 RWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIG 390

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            A+ V     + DV++W S+ISG   N    EA + F +M S    P + T+ S+L ACA
Sbjct: 391 DARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACA 450

Query: 362 SAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           S    R G  +HG AI  G+  G ++V +AL++ YAKCG    AR +FD+M E+NT+TW+
Sbjct: 451 SVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWS 510

Query: 421 SMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI G    G C  ++ELF  M +E+ + + + FT +L+AC H G++  G R FN M + 
Sbjct: 511 AMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQV 570

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y  +P  +HYACMVDLL RAGRL EA + I+ +  +PD+ + GA L  C+ H   +L E+
Sbjct: 571 YNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEV 630

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           A + + EL P+ A   +L+++LYA+ G
Sbjct: 631 AVRRMLELHPDKACYYVLMSNLYASEG 657



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 240/503 (47%), Gaps = 38/503 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + + S + +HA L+V GL+      TKL++ Y    ++  AR++FD I   +++ W  + 
Sbjct: 50  KTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMI 109

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS-VLKACGHLSDIGTGEKIHSLVLKHSF 210
             Y     + E V  ++    + L +   V+ S VLKAC  L +   G K+H  ++K   
Sbjct: 110 RWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG- 168

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D+FV++ L+DMY+KC  VE +++VFDE++++++V   +M+ GYVQ     E L L   
Sbjct: 169 SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNR 228

Query: 271 IGTPRVKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKG- 310
           +    V+ N  T  +L++  +K G                   +  +V+ L  L    G 
Sbjct: 229 MREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGD 288

Query: 311 -----------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                         D+VSWT++I G        EA   F +   +   P + T SS+L A
Sbjct: 289 IRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSA 348

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA   ++  G+ +H   I +G E D    +ALVDMYAKC  I +AR +F+ + +++ + W
Sbjct: 349 CAQTGSLNMGRSVHCLGIKLGSE-DATFENALVDMYAKCHMIGDARYVFETVFDKDVIAW 407

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NS+I G   +GY  EA+ELF+QM       D ++  +VL+AC  VG   +G  L     +
Sbjct: 408 NSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIK 467

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA- 537
              +         +++   + G  AE+  +I     E +   W A++G     G+   + 
Sbjct: 468 AGLLSGSVYVGTALLNFYAKCGD-AESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSL 526

Query: 538 EIAAKHLSE-LEPESAANNMLLT 559
           E+    L E LEP       +L+
Sbjct: 527 ELFGDMLKEKLEPNEVIFTTILS 549



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 178/388 (45%), Gaps = 52/388 (13%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L  C  +S +    KIH+L++ H    D    + L+ +Y   G VE A+ +FD +   
Sbjct: 44  SLLGICKTVSSL---RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNP 100

Query: 244 DIVAMNAMVSGY--------------------------VQRGLATEALNLVEEIGTPR-- 275
           D+ +   M+  Y                          V   +  +A + + E    R  
Sbjct: 101 DLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKL 160

Query: 276 ----VK---PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
               VK   P+      L+  ++K  +     ++F  +    ++ +VV WTS+I G V N
Sbjct: 161 HCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEI----LDRNVVCWTSMIVGYVQN 216

Query: 329 FCNDEA---FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
            C  E    F+  +E L +G      T+ S++ AC     + +GK +HG  I  G + + 
Sbjct: 217 DCLKEGLVLFNRMREGLVEG---NQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNS 273

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
            + + L+D+Y KCG I +A ++FD++S  + V+W +MI G A  GY  EA++LF     +
Sbjct: 274 FLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWK 333

Query: 446 KKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             L + ++ ++VL+AC   G + +G R  + +  K      T   A +VD+  +   + +
Sbjct: 334 DLLPNTVTTSSVLSACAQTGSLNMG-RSVHCLGIKLGSEDATFENA-LVDMYAKCHMIGD 391

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHG 532
           A  + +T+  + D+  W +++     +G
Sbjct: 392 ARYVFETV-FDKDVIAWNSIISGYTQNG 418


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 176/506 (34%), Positives = 272/506 (53%), Gaps = 40/506 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH  +I  G      +A  L+  Y++   +  A  LF+ +P TN+  W  +   + +
Sbjct: 92  GNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQ 151

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  EA  +F EM   G+  +     S L +    + +  G++IH  +L+H    D F+
Sbjct: 152 NGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFL 211

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+LID+Y KC  V  A K+F +    DIV   A++SGYV  GL  +AL +   +   ++
Sbjct: 212 KSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKM 271

Query: 277 KPNVVTWNTLISG-----------------------------------FSKSGDQVMVSK 301
            PN VT  +++                                     ++K G   +  +
Sbjct: 272 SPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQ 331

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F+ M     E D V W ++I+    N    EA D F++M  +G      +IS+ L ACA
Sbjct: 332 IFRRMP----EKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACA 387

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           +   +  GK IH   I    + ++   SAL+DMY KCG +S AR +FD M E+N V+WNS
Sbjct: 388 NLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNS 447

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I    +HG+ + ++ LF++M E+  + DH++F  +L+AC H G V+ G + F  M E+Y
Sbjct: 448 IIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEY 507

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I  R EHYAC+VDL GRAGRL EA+E IK M   PD  VWG LLGAC+ HGN+ELAE+A
Sbjct: 508 GIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVA 567

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           ++ L +L+PE++   +LL++++A+AG
Sbjct: 568 SRCLLDLDPENSGCYVLLSNVHADAG 593



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 231/461 (50%), Gaps = 46/461 (9%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + + LI  Y E   I  AR LFD++P  +   W  +   + + G    AV VF +M    
Sbjct: 9   VGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQ 68

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
            K N     SVL  C   +    G ++H LV+   F  D  V ++L+ MYSK G +  A 
Sbjct: 69  TKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDAL 128

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------- 283
           K+F+ M + ++V  N M++G+VQ G   EA  L  E+ +  V P+ +T+           
Sbjct: 129 KLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESA 188

Query: 284 ------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                                   + LI  + K  D  M  K+F+    +    D+V  T
Sbjct: 189 SLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFK----QSTNVDIVVCT 244

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++ISG V N  N++A + F+ +L +   P + T++S+LPACA  A +  GKE+H   +  
Sbjct: 245 AIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKH 304

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           G++   HV SA++DMYAKCG +  A  +F +M E++ V WN++I  C+ +G   EAI+LF
Sbjct: 305 GLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLF 364

Query: 440 NQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDLL 496
            QM  E    D +S +A L+AC ++  +  G+ + + M    K    +E +A   ++D+ 
Sbjct: 365 RQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFM---IKGAFDSEVFAESALIDMY 421

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           G+ G L+ A   +  M  E +   W +++ A  +HG++E++
Sbjct: 422 GKCGNLSVA-RCVFDMMREKNEVSWNSIIAAYGSHGHLEVS 461



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 194/361 (53%), Gaps = 36/361 (9%)

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F  D FV SSLI +Y++ G +E A+++FD+M  KD V  N M++G+V+ G    A+ + E
Sbjct: 3   FNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFE 62

Query: 270 EIGTPRVKPNVVTWNTLIS-----GFSKSGDQV---------------------MVSKLF 303
           ++   + KPN +T+ +++S       S+ G+Q+                     M SK  
Sbjct: 63  DMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFG 122

Query: 304 QL---MRAKGVEPD--VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           QL   ++     PD  VV+W  +I+G V N   DEA   F EM+S G  P S T +S LP
Sbjct: 123 QLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLP 182

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           +   +A++++GKEIHG  +  G+  D+ ++SAL+D+Y KC  +  A  +F + +  + V 
Sbjct: 183 SVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVV 242

Query: 419 WNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLF-NMM 476
             ++I G   +G  ++A+E+F   +EE+   + ++  +VL AC  +  + LG+ L  N++
Sbjct: 243 CTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANIL 302

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             K+ +  R    + ++D+  + GRL  AY++ + M  E D   W A++  C  +G  + 
Sbjct: 303 --KHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRM-PEKDAVCWNAIITNCSQNGKPQE 359

Query: 537 A 537
           A
Sbjct: 360 A 360



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 170/375 (45%), Gaps = 41/375 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK +H  ++  G+A    + + LI  Y +C+++  A  +F +    +I    A+  
Sbjct: 189 SLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIIS 248

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G + +A+ +F  +  + +  N   + SVL AC  L+ +  G+++H+ +LKH    
Sbjct: 249 GYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDE 308

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              V S+++DMY+KCG ++ A ++F  M EKD V  NA+++   Q G   EA++L  ++G
Sbjct: 309 RRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMG 368

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              +  + V+                                    + LI  + K G+  
Sbjct: 369 REGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLS 428

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           +   +F +MR    E + VSW S+I+    +   + +   F +ML  G  P   T  +IL
Sbjct: 429 VARCVFDMMR----EKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTIL 484

Query: 358 PACASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            AC  A  + +G +   C     G+   +   + +VD++ + G ++EA      M    +
Sbjct: 485 SACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPD 544

Query: 416 TVTWNSMIFGCANHG 430
              W +++  C  HG
Sbjct: 545 DGVWGTLLGACRVHG 559



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 156/325 (48%), Gaps = 11/325 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK LHA ++  GL     + + ++  Y +C  +  A  +F  +P+ +   W A+   
Sbjct: 291 LNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITN 350

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            ++ G  QEA+ +F +M  +GL  +   I + L AC +L  +  G+ IHS ++K +F ++
Sbjct: 351 CSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSE 410

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F  S+LIDMY KCG++  A+ VFD M EK+ V+ N++++ Y   G    +L L  ++  
Sbjct: 411 VFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLE 470

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN-- 331
             ++P+ VT+ T++S    +G    V K  Q  R    E  + +     + +V  F    
Sbjct: 471 DGIQPDHVTFLTILSACGHAGQ---VDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAG 527

Query: 332 --DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             +EAF+T K M    F P      ++L AC    N+   +    C + +  E       
Sbjct: 528 RLNEAFETIKNM---PFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENS-GCYV 583

Query: 390 ALVDMYAKCGFISEARTLFDKMSER 414
            L +++A  G     R +   M +R
Sbjct: 584 LLSNVHADAGQWGSVRKIRSLMKKR 608



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           MG   D  V S+L+ +YA+ G I +AR LFDKM  ++ V WN M+ G    G  + A+++
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 439 FNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE-KYKIMPRTEHYACMVDLL 496
           F  M   + K + ++F +VL+ C    L E G +L  ++    +   P   +   +V + 
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVAN--ALVAMY 118

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
            + G+L++A ++  TM  + ++  W  ++     +G ++ A +
Sbjct: 119 SKFGQLSDALKLFNTM-PDTNVVTWNGMIAGFVQNGFMDEASL 160


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 285/510 (55%), Gaps = 40/510 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +  G  +H   +  G      +A  LI  Y+  + + +AR+LFDE+P  ++  W A+ 
Sbjct: 164 RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMI 223

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             Y + G  +EA+T+ +     GL+  +   + S+L AC    D   G  IHS  +KH  
Sbjct: 224 SGYCQSGNAKEALTLSN-----GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 278

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++ FV + LID+Y++ G +   +KVFD M  +D+++ N+++  Y        A++L +E
Sbjct: 279 ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 338

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGD---------------------------QVMVSKLF 303
           +   R++P+ +T  +L S  S+ GD                            VM +KL 
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLG 398

Query: 304 QLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSIL 357
            +  A+ V       DV+SW ++ISG   N    EA + +  M  +G       T  S+L
Sbjct: 399 LVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVL 458

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           PAC+ A  +R+G ++HG  +  G+  D+ V ++L DMY KCG + +A +LF ++   N+V
Sbjct: 459 PACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 518

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WN++I     HG+ ++A+ LF +M +E  K DH++F  +L+AC H GLV+ GQ  F MM
Sbjct: 519 PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMM 578

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           Q  Y I P  +HY CMVD+ GRAG+L  A + IK+MS +PD  +WGALL AC+ HGN++L
Sbjct: 579 QTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 638

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +IA++HL E+EPE    ++LL+++YA+AG
Sbjct: 639 GKIASEHLFEVEPEHVGYHVLLSNMYASAG 668



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 147/493 (29%), Positives = 233/493 (47%), Gaps = 58/493 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQS K LHA+L+VS   +   I+ KL+  Y    N+  AR  FD I   +++ W  +   
Sbjct: 67  LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126

Query: 154 YARRGYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y R G   E +  F   M   GL  +    PSVLKAC  + D   G KIH L LK  F  
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMW 183

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D +V +SLI +YS+  +V  A+ +FDEM  +D+ + NAM+SGY Q G A EAL L   + 
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243

Query: 273 TPRVKPNVVTWNTLISGFSKSGD------------------QVMVS-------------- 300
                 + VT  +L+S  +++GD                  ++ VS              
Sbjct: 244 A----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299

Query: 301 ---KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K+F  M  +    D++SW S+I     N     A   F+EM      P   T+ S+ 
Sbjct: 300 DCQKVFDRMYVR----DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLA 355

Query: 358 PACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
              +   ++R  + + G  +  G    D+ + +A+V MYAK G +  AR +F+ +   + 
Sbjct: 356 SILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDV 415

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFN 474
           ++WN++I G A +G+  EAIE++N MEE  ++  +  ++ +VL AC   G +  G +L  
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHG 475

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNH 531
            +  K  +         + D+ G+ GRL +A   +  I  +++ P    W  L+     H
Sbjct: 476 RLL-KNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVP----WNTLIACHGFH 530

Query: 532 GNIELAEIAAKHL 544
           G+ E A +  K +
Sbjct: 531 GHGEKAVMLFKEM 543



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 7/175 (4%)

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           N++  K +H   +V     ++ + + LV++Y   G ++ AR  FD +  R+   WN MI 
Sbjct: 66  NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125

Query: 425 GCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           G    G   E I  F+       L  D+ +F +VL AC  V    +     + +  K+  
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV----IDGNKIHCLALKFGF 181

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           M      A ++ L  R   +  A  +   M    D+  W A++      GN + A
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQSGNAKEA 235


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 283/486 (58%), Gaps = 36/486 (7%)

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
           T +  +L+  Y +  N+  AR LFD++ + ++  W A+  AY++ G  ++   VF +M +
Sbjct: 58  TFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSV 117

Query: 173 -------------------------------QGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
                                          +G +   +   SVL AC  L DI  G++I
Sbjct: 118 HDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQI 177

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H  ++  S G   FV ++L +MY+KCG++++A+ +FD MV K++V+ N+M+SGY+Q G  
Sbjct: 178 HGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQP 237

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
                L  E+ +  + P+ VT + ++S + + G      K F+ ++    E D V WT++
Sbjct: 238 ETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIK----EKDKVCWTTM 293

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           + G   N   ++A   F+EML +   P + TISS++ +CA  A++ +G+ +HG A++ GV
Sbjct: 294 MVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGV 353

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           + DL V SALVDMY+KCG  ++A  +F +M  RN ++WNSMI G A +G   EA+ L+ +
Sbjct: 354 DHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEE 413

Query: 442 M-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M  E  K D+++F  VL+AC H GLVE GQ  F  + + + + P  +HY+CM++LLGRAG
Sbjct: 414 MLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAG 473

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
            + +A ++IK+M+ EP+  +W  LL  C+ + ++   E+AA+HL EL+P +A   ++L++
Sbjct: 474 YMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSN 533

Query: 561 LYANAG 566
           +YA  G
Sbjct: 534 IYAACG 539



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 174/349 (49%), Gaps = 49/349 (14%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           +L  C   +D+   +++ + +  H +  TD F+ + L+ +Y+K G++  A+ +FD+M  +
Sbjct: 28  LLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRR 87

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           D+ + NAM+S Y + G   +   + +++       + V++NT+I+GFS +G         
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSV----HDAVSYNTVIAGFSGNG--------- 134

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                                     C+ +A + F  M  +GF  T  T  S+L AC+  
Sbjct: 135 --------------------------CSSQALEFFVRMQEEGFESTDYTHVSVLHACSQL 168

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            +++RGK+IHG  +   +   + V +AL +MYAKCG + +AR LFD+M  +N V+WNSMI
Sbjct: 169 LDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMI 228

Query: 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G   +G  +   +LF +M+    + D ++ + +L+A    G ++   + F  ++EK K+
Sbjct: 229 SGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKV 288

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGAC 528
              T    C      + G+  +A  + + M  E   PD F   +++ +C
Sbjct: 289 CWTTMMVGC-----AQNGKEEDALLLFREMLLENVRPDNFTISSVVSSC 332



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 160/338 (47%), Gaps = 17/338 (5%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           +  R  + +  +++  I  Y+++   ++   L  ++  SGL       + +++ Y +C  
Sbjct: 212 LFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGY 271

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I  A   F EI + +   W  +    A+ G  ++A+ +F EM ++ ++ + F I SV+ +
Sbjct: 272 IDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSS 331

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  L+ +  G+ +H   +      D  V S+L+DMYSKCG    A  VF  M+ +++++ 
Sbjct: 332 CARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISW 391

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK----LFQ 304
           N+M+ GY Q G   EAL L EE+    +KP+ +T+  ++S    +G   +V +     + 
Sbjct: 392 NSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAG---LVERGQGYFYS 448

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           + +  G+ P    ++ +I+ L      D+A D  K M    F P     S++L  C    
Sbjct: 449 ISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMT---FEPNCLIWSTLLSVCRINC 505

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSA---LVDMYAKCG 399
           ++  G+     A     E D H       L ++YA CG
Sbjct: 506 DVNNGE----MAARHLFELDPHNAGPYIMLSNIYAACG 539


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 181/505 (35%), Positives = 269/505 (53%), Gaps = 32/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH   +  GL   + +A  L+  Y++CQ +  AR LFD  P++++  W  +   
Sbjct: 175 LDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISG 234

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G   EA  +F  M   G+K +     S L     L  +   ++IH  +++H+   D
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLD 294

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F+ S+LID+Y KC  VE A+K+  +    D V    M+SGYV  G   EAL     +  
Sbjct: 295 VFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ 354

Query: 274 PRVKPNVVTWNTLISGF------------------SKSGDQVMVSKLFQLMRAKG----- 310
            R+KP  VT++++   F                  +K  ++  V      M AK      
Sbjct: 355 ERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDL 414

Query: 311 --------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E D + W S+I+    N    EA + F++M  +G      +IS  L ACA+
Sbjct: 415 ACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACAN 474

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GKEIHG  I   +  DL+  S+L+DMYAKCG ++ +R +FD+M ERN V+WNS+
Sbjct: 475 LPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSI 534

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I    NHG   E + LF++M     + DH++F  +++AC H G V+ G R +++M E+Y 
Sbjct: 535 ISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYG 594

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I  R EHYAC+ D+ GRAGRL EA+E I +M   PD  VWG LLGAC  HGN+ELAE+A+
Sbjct: 595 IPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVAS 654

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           KHL +L+P ++   +LL ++ A AG
Sbjct: 655 KHLFDLDPLNSGYYVLLANVQAGAG 679



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/482 (29%), Positives = 241/482 (50%), Gaps = 46/482 (9%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++++ GKI+H  + + GL     + + LI  Y E  ++  A+ LFD IP+ +   W  + 
Sbjct: 72  KSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVML 131

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y + G    A+ +F EM    +K N      VL  C   + +  G ++H + +     
Sbjct: 132 NGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLE 191

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D+ V ++L+ MYSKC  ++ A+K+FD   + D+V+ N ++SGYVQ GL  EA +L   +
Sbjct: 192 LDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM 251

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
            +  +KP+ +T+                                   + LI  + K  D 
Sbjct: 252 ISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
            M  K+      +    D V  T++ISG V N  N EA + F+ ++ +   PTS T SSI
Sbjct: 312 EMAQKIL----CQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSI 367

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
            PA A  A +  GKE+HG  I   ++   HV SA++DMYAKCG +  A  +F++++E++ 
Sbjct: 368 FPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDA 427

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           + WNSMI  C+ +G   EAI LF QM  E  + D +S +  L+AC ++  +  G+ +  +
Sbjct: 428 ICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGL 487

Query: 476 MQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           M    K   R++ YA   ++D+  + G L  +  +   M  E +   W +++ A  NHG+
Sbjct: 488 M---IKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ-ERNEVSWNSIISAYGNHGD 543

Query: 534 IE 535
           ++
Sbjct: 544 LK 545



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 206/446 (46%), Gaps = 42/446 (9%)

Query: 123 YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
           Y    ++  A+ LF  +       W  +   +   G    A+  + +M   G+  + +  
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
           P V+KAC  L  +  G+ +H  V       D FV SSLI +Y++ G +  A+ +FD + +
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------- 283
           KD V  N M++GYV+ G +  A+ +  E+    +KPN VT+                   
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 284 ----------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                           NTL++ +SK        KLF        + D+VSW  +ISG V 
Sbjct: 182 HGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFD----TSPQSDLVSWNGIISGYVQ 237

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N    EA   F+ M+S G  P S T +S LP      +++  KEIHG  I   V  D+ +
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFL 297

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
           +SAL+D+Y KC  +  A+ +  + S  +TV   +MI G   +G   EA+E F  + +ER 
Sbjct: 298 KSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERM 357

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           K   ++F+++  A   +  + LG+ L   +  K K+  +    + ++D+  + GRL  A 
Sbjct: 358 KPTSVTFSSIFPAFAGLAALNLGKELHGSII-KTKLDEKCHVGSAILDMYAKCGRLDLAC 416

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHG 532
            +   + TE D   W +++ +C  +G
Sbjct: 417 RVFNRI-TEKDAICWNSMITSCSQNG 441



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK LH  +I + L     + + ++  Y +C  +  A  +F+ I + +   W ++  
Sbjct: 376 ALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMIT 435

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           + ++ G   EA+ +F +M ++G + +   I   L AC +L  +  G++IH L++K    +
Sbjct: 436 SCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRS 495

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D +  SSLIDMY+KCG++  +++VFD M E++ V+ N+++S Y   G   E L L  E+ 
Sbjct: 496 DLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEML 555

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
              ++P+ VT+  +IS    +G      + + LM  + G+   +  +  V          
Sbjct: 556 RNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRL 615

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           DEAF+T   M    F P +    ++L AC    N+ 
Sbjct: 616 DEAFETINSM---PFPPDAGVWGTLLGACHIHGNVE 648



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           MY + G + +A+ LF  +    T  WN MI G    G  + A+  + +M       D  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY---ACMVDLLGRAGRLAEAYEMI 509
           F  V+ ACC +  V++G+    ++ E   +M   E     + ++ L    G L++A  + 
Sbjct: 61  FPYVVKACCGLKSVKMGK----IVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116

Query: 510 KTMSTEPDLFVWGALL-GACKN--HGNIELAEIAAKHLSELEPES 551
             +  + D  +W  +L G  KN   GN     +  +H SE++P S
Sbjct: 117 DNI-PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRH-SEIKPNS 159


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 181/478 (37%), Positives = 265/478 (55%), Gaps = 43/478 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHA-----RMLFDEIPKTNIHRW 147
           L+ G    A+ ++ G+   T +  + LI  +    +   A     RM  D + + N+  W
Sbjct: 66  LRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGV-EPNVITW 124

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             L     R G  ++AV     MH +G   +   +   L A G + D+  GE++H  V+K
Sbjct: 125 NGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK 184

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                DA V ++LIDMY KCG  ++  +VFDE    D+ + NA                 
Sbjct: 185 AGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNA----------------- 227

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                             L++G S++       +LF+    +G+E +VVSWTS+++  V 
Sbjct: 228 ------------------LVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQ 269

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N  + EA D F+EM S+G  P S TI  +LPA A+ A +  G+  H  ++  G   D++V
Sbjct: 270 NGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYV 329

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
            SALVDMYAKCG + +AR +F+ M  RN V+WN+MI G A HG  + A+ LF  M+  K 
Sbjct: 330 GSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKE 389

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           K D ++FT VL AC   G  E G+  FN MQ K+ I PR EHYACMV LLGRAG+L +AY
Sbjct: 390 KPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAY 449

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           ++I  M  EPD  +WG+LLG+C+ HGN+ LAE+AA++L +LEPE+A N +LL+++YA+
Sbjct: 450 DIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYAS 507



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           GV  D  V S+L+  Y + G  ++AR++ D M  R  V W+++I   A+HG  + A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 440 NQM 442
            +M
Sbjct: 110 ERM 112


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 172/487 (35%), Positives = 284/487 (58%), Gaps = 10/487 (2%)

Query: 86  EIYIRDRAL----QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIP 140
           + +I +R L    +SG+I HA+ +   + +    +   +++ Y +   +   R++FD +P
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMP 116

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +   +  +   +A  G    A+ VF  M  +GLK   +   SVL AC  L D+  G++
Sbjct: 117 SRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQ 176

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IH  ++  + G + FV ++L D+Y++CG +++A+++FD MV +++V  N M+SGY++   
Sbjct: 177 IHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQ 236

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
             + ++L  E+    +KP+ VT ++++  + ++G      K+F  +R    E D V WT 
Sbjct: 237 PEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIR----EKDEVCWTI 292

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +I G   N   ++A   F EML +   P   TISS++ +CA  A++  G+ +HG A +MG
Sbjct: 293 MIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMG 352

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF- 439
           V  DL V SALVDMY KCG   +A T+F  M  RN V+WNSMI G A +G   EA+ L+ 
Sbjct: 353 VNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYE 412

Query: 440 NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           N +EE  K D ++F  VL+AC H GLVE G+  F  M +++ + P  +HYACMV+L GR+
Sbjct: 413 NMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRS 472

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G + +A ++I +MS EP+  +W  +L  C   G+I+  E+AA+ L EL P +A   ++L+
Sbjct: 473 GHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLS 532

Query: 560 DLYANAG 566
           ++YA  G
Sbjct: 533 NMYAARG 539


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 189/544 (34%), Positives = 289/544 (53%), Gaps = 73/544 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIA 149
           +++++ K +HA +I +GL       +KLI F   +   +I +A  LF+ I + N+  W +
Sbjct: 40  QSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNS 99

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +    +       A+  F  M   G++ N +  P +LK+C  L+    G++IH+ VLK  
Sbjct: 100 MIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLG 159

Query: 210 FGTDAFVVSSLIDMYSKCGSV-------------------------------EKAKKVFD 238
           F +D F+ +SLI+MY++ G +                               ++A+++FD
Sbjct: 160 FVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFD 219

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT---------------- 282
           EM  KD+V+ NAM++GY Q G + EAL L E++    V PN  T                
Sbjct: 220 EMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDL 279

Query: 283 ------W-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                 W             N LI  +SK GD     +LF  M    +E DV+SW  +I 
Sbjct: 280 GNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM----LERDVISWNVMIG 335

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G  H     EA   F+EML+ G  PT  T  SILP+CA    +  GK IH          
Sbjct: 336 GYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSV 395

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
              + ++L+D+YAKCG I  AR +FD M  ++  +WN+MI G A HG  D+A ELF++M 
Sbjct: 396 STSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMS 455

Query: 444 ERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
               + + ++F  +L+AC H GLV+LGQ+ F+ M + YKI P+++HY CM+DLLGRAG  
Sbjct: 456 SDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLF 515

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            EA  +++ M  +PD  +WG+LLGAC++HG +EL E+ A+ L ELEP++    +LL+++Y
Sbjct: 516 EEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIY 575

Query: 563 ANAG 566
           A AG
Sbjct: 576 AGAG 579



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 201/445 (45%), Gaps = 62/445 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAH-YKMPIISRSFHLSPAAYSERIEIYIRDRALQSGK 98
           L+ SC+K AS        G  I AH  K+  +S  F      ++  I +Y      QSG+
Sbjct: 135 LLKSCAKLASAH-----EGKQIHAHVLKLGFVSDVF-----IHTSLINMYA-----QSGE 179

Query: 99  ILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           + +AQL+         I+ T LI  Y     +  AR LFDE+P  ++  W A+   YA+ 
Sbjct: 180 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 239

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G  +EA+ +F +M    +  N   I SVL AC   + +  G  + S +      ++  +V
Sbjct: 240 GRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV 299

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++LIDMYSKCG ++ A+++FD+M+E+D+++ N M+ GY       EAL L  E+    V+
Sbjct: 300 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 359

Query: 278 PNVVTWNTLISG-----------------------------------FSKSGDQVMVSKL 302
           P  +T+ +++                                     ++K G+ V   ++
Sbjct: 360 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQV 419

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  M+ K     + SW ++I GL  +   D+AF+ F +M S G  P   T   IL AC  
Sbjct: 420 FDGMKIKS----LASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKH 475

Query: 363 AANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWN 420
           A  +  G++     +    +         ++D+  + G   EA +L   M  + +   W 
Sbjct: 476 AGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWG 535

Query: 421 SMIFGCANHGYCDEAIELFNQMEER 445
           S++  C +HG     +EL   + ER
Sbjct: 536 SLLGACRDHG----RVELGELVAER 556


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 280/508 (55%), Gaps = 40/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H QLIV+G A      T ++  Y +C+ +  A  +FD +P+ ++  W  +   
Sbjct: 191 LRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISG 250

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G+ + A+ +   M  +G + +   I S+L A   +  +  G  IH   ++  F + 
Sbjct: 251 YAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESF 310

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L+DMYSKCGSV  A+ +FD M  K +V+ N+M+ GYVQ G    A+ + +++  
Sbjct: 311 VNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMD 370

Query: 274 PRVKPNVVT-----------------------------------WNTLISGFSKSGDQVM 298
            +V+   VT                                    N+LIS +SK     +
Sbjct: 371 EQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDI 430

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            +++F+ ++ K     +VSW ++I G   N   +EA D F +M  Q   P S T+ S++P
Sbjct: 431 AAEIFENLQHK----TLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIP 486

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  + + + K IHG  I   ++ ++ V +ALVDMYAKCG +  AR LFD M ER+  T
Sbjct: 487 ALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTT 546

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G   HG    A+ELF +M +E  K + ++F  VL+AC H GLVE G + F  M+
Sbjct: 547 WNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMK 606

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y + P  +HY  MVDLLGRA RL EA++ I+ M  EP + V+GA+LGAC+ H N+EL 
Sbjct: 607 KDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELG 666

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANA 565
           E AA  + +L+P+    ++LL ++YA A
Sbjct: 667 EKAANRIFDLDPDDGGYHVLLANIYATA 694



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 169/335 (50%), Gaps = 16/335 (4%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G+ +H  L    L     +   LI+ Y++C+ +  A  +F+ +    +  W A+   
Sbjct: 393 VEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILG 452

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G   EA+  F +M +Q +K + F + SV+ A   LS +   + IH LV++     +
Sbjct: 453 YAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKN 512

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMY+KCG+V  A+K+FD M E+ +   NAM+ GY   GL   AL L E++  
Sbjct: 513 VFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKK 572

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ----LMRAKGVEPDVVSWTSVISGLVHNF 329
             +KPN VT+  ++S  S SG   +V + FQ    + +  G+EP +  + +++  L    
Sbjct: 573 EVIKPNEVTFLCVLSACSHSG---LVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRAN 629

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVR 388
             +EA+D  ++M  +   P  +   ++L AC    N+  G++       +   +G  HV 
Sbjct: 630 RLNEAWDFIQKMPIE---PAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHV- 685

Query: 389 SALVDMYAKCGF---ISEARTLFDKMSERNTVTWN 420
             L ++YA       ++  RT  +K   + T  W+
Sbjct: 686 -LLANIYATASMWDKVARVRTTMEKKGIQKTPGWS 719



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 183/382 (47%), Gaps = 36/382 (9%)

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
           L++K+   ++    + L+ ++ K GS+ +A +VF  + +K     + M+ GY +     +
Sbjct: 99  LIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDD 158

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD---------QVMV----SKLFQL----- 305
           A++    +    V+P V  +  L+     + D         Q++V    S +F +     
Sbjct: 159 AVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVN 218

Query: 306 -------------MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
                        M  +  E D+V W ++ISG   N     A +    M  +G  P S T
Sbjct: 219 MYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSIT 278

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           I SILPA A   ++R G+ IHG ++  G E  ++V +ALVDMY+KCG +  AR +FD+M+
Sbjct: 279 IVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMT 338

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQR 471
            +  V+WNSMI G   +G    A+E+F + M+E+ ++ +++    L AC  +G VE G R
Sbjct: 339 GKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-R 397

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
             + + ++ ++         ++ +  +  R+  A E+ + +  +  L  W A++     +
Sbjct: 398 FVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKT-LVSWNAMILGYAQN 456

Query: 532 GNIELA--EIAAKHLSELEPES 551
           G I  A        L  ++P+S
Sbjct: 457 GRINEAIDYFCKMQLQNIKPDS 478



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 164/374 (43%), Gaps = 41/374 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ G+ +H   + +G      ++T L+  Y++C ++  AR++FD +    +  W ++  
Sbjct: 291 SLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMID 350

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G    A+ +F +M  + ++     +   L AC  L D+  G  +H L+ +   G+
Sbjct: 351 GYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGS 410

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V++SLI MYSKC  V+ A ++F+ +  K +V+ NAM+ GY Q G   EA++   ++ 
Sbjct: 411 DVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQ 470

Query: 273 TPRVKP-----------------------------------NVVTWNTLISGFSKSGDQV 297
              +KP                                   NV     L+  ++K G   
Sbjct: 471 LQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVH 530

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              KLF +M     E  V +W ++I G   +     A + F++M  +   P   T   +L
Sbjct: 531 TARKLFDMMD----ERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVL 586

Query: 358 PACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            AC+ +  +  G +  G      G+E  +    A+VD+  +   ++EA     KM  E  
Sbjct: 587 SACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPA 646

Query: 416 TVTWNSMIFGCANH 429
              + +M+  C  H
Sbjct: 647 ISVFGAMLGACRIH 660


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 176/472 (37%), Positives = 274/472 (58%), Gaps = 16/472 (3%)

Query: 101 HAQLIVSGLARLTQIATKLI---TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           HA ++ SGL   T  A++LI   +  +  Q I +A  +F  IP  N + W  +  AYA  
Sbjct: 27  HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANS 86

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
              + A+T+FH+M    +  + +     LK+CG  S +  G +IH  VLK   G D F+ 
Sbjct: 87  PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQ 146

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++LI +Y+ CG +E A+ + D M+E+D+V+ NA++S Y +RGL   A +L +E+     +
Sbjct: 147 NTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEM----TE 202

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP--DVVSWTSVISGLVHNFCNDEAF 335
            NV +WN +ISG+      V V  L +  R  G  P  +VVSW ++I+G  H     E  
Sbjct: 203 RNVESWNFMISGY------VGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVL 256

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F++M   G  P + T+ S+L ACA    + +G+ +H      G+  D  V +ALVDMY
Sbjct: 257 VLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMY 316

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           +KCG I +A  +F+    ++  TWNS+I G + HG    A+++F++M  E  K + ++F 
Sbjct: 317 SKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFV 376

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL+AC   GL++ G+ +FN+M   + I P  EHY CMVDLLGR G L EA E+++ M  
Sbjct: 377 CVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQ 436

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +    VW +LLGAC+NHGN+ELAE  A+ L EL P+ +++ + L+++YA+ G
Sbjct: 437 KEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMG 488



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 166/394 (42%), Gaps = 72/394 (18%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ G+ +H  ++ +GL     I   LI  Y  C  I  AR L D + + ++  W AL  
Sbjct: 123 GVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLS 182

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AYA RG  + A  +F EM  + ++   F+I                              
Sbjct: 183 AYAERGLMELACHLFDEMTERNVESWNFMISG---------------------------- 214

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
                      Y   G +E+A++VF E   K++V+ NAM++GY   G  +E L L E++ 
Sbjct: 215 -----------YVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQ 263

Query: 273 TPRVKPNVVTWNTLIS--------------------------GFSKSGDQVMVSKLFQLM 306
              VKP+  T  +++S                          GF  +    M SK   + 
Sbjct: 264 HAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIE 323

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +A  V       D+ +W S+ISGL  +     A   F EML +GF P   T   +L AC+
Sbjct: 324 KALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACS 383

Query: 362 SAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTW 419
            A  +  G+E+    + V G++  +     +VD+  + G + EA  L  KM ++  +V W
Sbjct: 384 RAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVW 443

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF 453
            S++  C NHG  + A  +  ++ E    +  SF
Sbjct: 444 ESLLGACRNHGNVELAERVAQKLLELSPQESSSF 477



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +HA +  +G++    +AT L+  Y++C +I  A  +F+   + +I  W ++  
Sbjct: 286 ALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIIS 345

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             +  G  Q A+ +F EM ++G K N      VL AC     +  G ++ +L++ H  G 
Sbjct: 346 GLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMV-HVHGI 404

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDI-VAMNAMVSGYVQRG---LATEALN 266
              +     ++D+  + G +E+A+++  +M +K+  V   +++      G   LA     
Sbjct: 405 QPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQ 464

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
            + E+ +P+   + V  + + +   +  D   V ++ Q MRA+GV  D       + G V
Sbjct: 465 KLLEL-SPQESSSFVQLSNMYASMGRWKD---VMEVRQKMRAQGVRKDPGCSMIEVDGTV 520

Query: 327 HNFCNDEAFDTFKE 340
           + F   E   + K+
Sbjct: 521 YEFLAGEGLVSGKD 534


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 186/511 (36%), Positives = 269/511 (52%), Gaps = 75/511 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT----------- 142
           L   + LHA   VSGLAR   +A+ L+  Y       +AR LFD +P+            
Sbjct: 33  LPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALV 92

Query: 143 ---------------------------NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
                                      N+  W  L     R G  ++AV     MH +GL
Sbjct: 93  AAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGL 152

Query: 176 -KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
            + +   +   L A G +  +  G+++H   +K     DA VV++LIDMY KCG   +  
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           +VFDE    D+ + NA                                   LI+G S++ 
Sbjct: 213 RVFDESSHMDVASCNA-----------------------------------LIAGLSRNA 237

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                 +LF+    +GVE +VVSWTS+++  V N  + EA + F+EM +QG  P S TI 
Sbjct: 238 QVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIP 297

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
            +LPA A+ A +  G+  H  A+  G   D++V SALVDMYAKCG + +AR +FD M  R
Sbjct: 298 CVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSR 357

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           N V+WN+MI G A +G    A+ +F+ M + ++K D ++FT +L AC   GL E G+  F
Sbjct: 358 NVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYF 417

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M  +Y + PR EHYACMV LLGRAG+L EAY++I  M  EPD ++WG+LLG+C+ HGN
Sbjct: 418 KEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGN 477

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           ++LAE+AA+ L  LEPE+A N +LL+++YA+
Sbjct: 478 VDLAEVAAEKLFHLEPENAGNYVLLSNIYAS 508


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 276/502 (54%), Gaps = 32/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK LH+ +I  G++    I   L+  Y +C +I  A   F      N+  W  +  AY +
Sbjct: 333 GKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQ 392

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   E+  +F +M I+GL  N +  PS+L+ C  L  +  GE+IH+ V+K  F  + +V
Sbjct: 393 LGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYV 452

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S LIDMY+K G ++ A+ +   + E+D+V+  AM++GY Q  L  EAL L +E+    +
Sbjct: 453 CSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGI 512

Query: 277 KPNVVTWN---------------------TLISGFSK--SGDQVMVSKLFQLMRAKGV-- 311
           + + + ++                     + ISG+S+  S    +VS   +  RA+    
Sbjct: 513 RSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYL 572

Query: 312 ------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                   D +SW ++ISG   +   +EA   F +M   G      T  S + A A+ AN
Sbjct: 573 AFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTAN 632

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +++GK+IH   I  G + +    + L+ +Y+KCG I +A+  F +M E+N V+WN+MI G
Sbjct: 633 IKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITG 692

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            + HGY  EA+ LF +M++   + +H++F  VL+AC HVGLV  G   F  M +++ ++P
Sbjct: 693 YSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVP 752

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           + EHY C+VDLLGRA  L  A E I+ M  EPD  +W  LL AC  H NIE+ E AA+HL
Sbjct: 753 KPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHL 812

Query: 545 SELEPESAANNMLLTDLYANAG 566
            ELEPE +A  +LL+++YA +G
Sbjct: 813 LELEPEDSATYVLLSNMYAVSG 834



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 239/492 (48%), Gaps = 42/492 (8%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P  +S  +    +    + G+ LH  ++  GL+  T +   L+T Y+   N+  A  +F
Sbjct: 212 TPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIF 271

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
            ++ + +   + +L    A+RG+   A+ +F +M +  +K +   + S+L AC  +    
Sbjct: 272 SKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGY 331

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G+++HS V+K    +D  +  SL+D+Y KC  +E A + F     +++V  N M+  Y 
Sbjct: 332 KGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYG 391

Query: 257 QRGLATE-------------------------------ALNLVEEIGTPRVKP----NVV 281
           Q G  +E                               AL+L E+I T  +K     NV 
Sbjct: 392 QLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY 451

Query: 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
             + LI  ++K G+      + Q +R    E DVVSWT++I+G   +    EA   F+EM
Sbjct: 452 VCSVLIDMYAKHGELDTARGILQRLR----EEDVVSWTAMIAGYTQHDLFAEALKLFQEM 507

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
            +QG    +   SS + ACA    + +G++IH  + + G   DL + +ALV +YA+CG  
Sbjct: 508 ENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRA 567

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
            +A   F+K+  ++ ++WN++I G A  G+C+EA+++F+QM +   + +  +F + ++A 
Sbjct: 568 QDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSAT 627

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            +   ++ G+++  MM  K      TE    ++ L  + G + +A      M  E ++  
Sbjct: 628 ANTANIKQGKQIHAMMI-KTGYDSETEASNVLITLYSKCGSIEDAKREFFEM-PEKNVVS 685

Query: 521 WGALLGACKNHG 532
           W A++     HG
Sbjct: 686 WNAMITGYSQHG 697



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 230/481 (47%), Gaps = 44/481 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            Q  + +HA++I  G      +   LI  Y++  ++  A+++F+ +   +   W+A+   
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISG 187

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            ++ G   EA+ +F +MH   +    +V  SVL AC  +     GE++H  ++K    ++
Sbjct: 188 LSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE 247

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+ +YS+ G++  A+++F +M  +D ++ N+++SG  QRG +  AL L E++  
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQL 307

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD------------------- 314
             +KP+ VT  +L+S  +  G      +L   +   G+  D                   
Sbjct: 308 DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIET 367

Query: 315 ------------VVSWTS--VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                       VV W    V  G + N    E++  F +M  +G  P   T  SIL  C
Sbjct: 368 AHEYFLTTETENVVLWNVMLVAYGQLGNL--SESYWIFLQMQIEGLMPNQYTYPSILRTC 425

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            S   +  G++IH   I  G + +++V S L+DMYAK G +  AR +  ++ E + V+W 
Sbjct: 426 TSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWT 485

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI G   H    EA++LF +ME +  + D++ F++ ++AC  +  +  GQ++      +
Sbjct: 486 AMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQI----HAQ 541

Query: 480 YKIMPRTEHYA---CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             I   +E  +    +V L  R GR  +AY   + +  + D   W AL+      G+ E 
Sbjct: 542 SYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK-DNISWNALISGFAQSGHCEE 600

Query: 537 A 537
           A
Sbjct: 601 A 601



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 229/497 (46%), Gaps = 50/497 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L   K LHA++  SG      + ++LI  Y     + +A  LFD+IP +N+  W  +  
Sbjct: 25  SLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVIS 84

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GHLSDIGTGEKIHSLVLKHSFG 211
               +    + + +F  M  + +  +     SVL+AC G  +     E+IH+ ++ H FG
Sbjct: 85  GLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFG 144

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +   V + LID+YSK G V+ AK VF+ +  KD V+  AM+SG  Q G   EA+ L  ++
Sbjct: 145 SSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM 204

Query: 272 GTPRVKPN--------------------------VVTW---------NTLISGFSKSGDQ 296
               V P                           +V W         N L++ +S+ G+ 
Sbjct: 205 HKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNL 264

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           +   ++F  M  +    D +S+ S+ISGL     +D A   F++M      P   T++S+
Sbjct: 265 IAAEQIFSKMHRR----DRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASL 320

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACAS     +GK++H   I MG+  DL +  +L+D+Y KC  I  A   F      N 
Sbjct: 321 LSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENV 380

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V WN M+      G   E+  +F QM+ E    +  ++ ++L  C  +G ++LG+++   
Sbjct: 381 VLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQ 440

Query: 476 MQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           +    K   +   Y C  ++D+  + G L  A  +++ +  E D+  W A++     H  
Sbjct: 441 V---IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQH-- 494

Query: 534 IELAEIAAKHLSELEPE 550
            +L   A K   E+E +
Sbjct: 495 -DLFAEALKLFQEMENQ 510



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 203/439 (46%), Gaps = 74/439 (16%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M  +G++ N+     + + C +   +   +K+H+ + K  F  +  + S LID+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------ 283
           V+ A K+FD++   ++   N ++SG + + LA++ L L   + T  V P+  T+      
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 284 ------------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                                         N LI  +SK+G   +   +F+ +  K    
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK---- 176

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D VSW ++ISGL  N   DEA   F +M      PT    SS+L AC      + G+++H
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLH 236

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
           G  +  G+  +  V +ALV +Y++ G +  A  +F KM  R+ +++NS+I G A  G+ D
Sbjct: 237 GFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSD 296

Query: 434 EAIELFNQME-ERKKLDHLSFTAVLTACCHVG--------------------------LV 466
            A++LF +M+ +  K D ++  ++L+AC  VG                          L+
Sbjct: 297 RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLL 356

Query: 467 ELGQRLFNM-MQEKYKIMPRTEH---YACMVDLLGRAGRLAEAYEMIKTMSTE---PDLF 519
           +L  + F++    +Y +   TE+   +  M+   G+ G L+E+Y +   M  E   P+ +
Sbjct: 357 DLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQY 416

Query: 520 VWGALLGACKNHGNIELAE 538
            + ++L  C + G ++L E
Sbjct: 417 TYPSILRTCTSLGALDLGE 435



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 122/203 (60%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL  G+ +HAQ  +SG +    I   L++ Y  C     A + F++I   +   W AL 
Sbjct: 530 QALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALI 589

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +A+ G+ +EA+ VF +M+  G++ N+F   S + A  + ++I  G++IH++++K  + 
Sbjct: 590 SGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYD 649

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++    + LI +YSKCGS+E AK+ F EM EK++V+ NAM++GY Q G  +EA++L EE+
Sbjct: 650 SETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEM 709

Query: 272 GTPRVKPNVVTWNTLISGFSKSG 294
               + PN VT+  ++S  S  G
Sbjct: 710 KQLGLMPNHVTFVGVLSACSHVG 732



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 14/247 (5%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +HA +I +G    T+ +  LIT Y++C +I  A+  F E+P+ N+  W A+   
Sbjct: 633 IKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITG 692

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGT 212
           Y++ GY  EAV++F EM   GL  N      VL AC H+  +  G     S+  +H    
Sbjct: 693 YSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVP 752

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGLAT---EALNL 267
                  ++D+  +   +  A++  +EM +E D +    ++S   V + +      A +L
Sbjct: 753 KPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHL 812

Query: 268 VEEIGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
           +E      ++P +  T+  L + ++ SG      +  Q+M+ +GV+ +   SW  V + +
Sbjct: 813 LE------LEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSI 866

Query: 326 VHNFCND 332
              F  D
Sbjct: 867 HAFFVGD 873


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 188/570 (32%), Positives = 293/570 (51%), Gaps = 101/570 (17%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           + +HA +I SG +    I  +LI  Y++C ++   R +FD++P+ NI+ W ++     + 
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 158 GYHQEAVTVFHEM-------------------------------HIQGLKQNIFVIPSVL 186
           G+  EA ++F  M                               H +G   N +   SVL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
            AC  L+D+  G ++HSL+ K  F +D ++ S+L+DMYSKCG+V  A++VFDEM ++++V
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--------------- 291
           + N++++ + Q G A EAL++ + +   RV+P+ VT  ++IS  +               
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 292 ----KSGDQVMVSKLFQLMRAKGVE-------------PDVVSWTSVIS----------- 323
               K  + +++S  F  M AK                 +V++ TS+IS           
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAA 339

Query: 324 --------------------GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                               G   N  N+EA   F  +  +  CPT  + ++IL ACA  
Sbjct: 340 RLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADL 399

Query: 364 ANMRRGKEI------HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           A +  G +       HG     G E D+ V ++L+DMY KCG + E   +F KM ER+ V
Sbjct: 400 AELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCV 459

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WN+MI G A +GY +EA+ELF +M E  +K DH++   VL+AC H G VE G+  F+ M
Sbjct: 460 SWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSM 519

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
              + + P  +HY CMVDLLGRAG L EA  MI+ M  +PD  +WG+LL ACK H NI L
Sbjct: 520 TRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITL 579

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +  A+ L E+EP ++   +LL+++YA  G
Sbjct: 580 GKYVAEKLLEVEPSNSGPYVLLSNMYAELG 609



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           D   +  +I  A+ I   +     IA T +I+ Y    +   AR++F ++ + N+  W A
Sbjct: 297 DMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNA 356

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   Y + G ++EA+++F  +  + +    +   ++LKAC  L+++  G + H  VLKH 
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHG 416

Query: 210 FG------TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
           F        D FV +SLIDMY KCG VE+   VF +M+E+D V+ NAM+ G+ Q G   E
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
           AL L  E+     KP+ +T   ++S     GF + G     S    + R  GV P    +
Sbjct: 477 ALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS----MTRDFGVAPLRDHY 532

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           T ++  L      +EA    +EM  Q   P S    S+L AC    N+  GK +
Sbjct: 533 TCMVDLLGRAGFLEEAKSMIEEMPMQ---PDSVIWGSLLAACKVHRNITLGKYV 583


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 189/509 (37%), Positives = 272/509 (53%), Gaps = 39/509 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  K++H     +G     +I   LI  Y +C +I  AR++FD +   ++  W A+ G
Sbjct: 438 ALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMG 497

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+ G   EA TVF +M  +GL  +     S+L   G    +    ++H   ++    +
Sbjct: 498 GLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLIS 557

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V S+ I MY +CGS++ A+ +FD++  + +   NAM+ G  Q+    EAL+L  ++ 
Sbjct: 558 DFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQ 617

Query: 273 TPRVKPNVVT---------------W-------------------NTLISGFSKSGDQVM 298
                P+  T               W                   N L+  +SK G+   
Sbjct: 618 REGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKY 677

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             ++F  M    VE +V +WT +I GL  + C  +AF  F +ML +G  P + T  SIL 
Sbjct: 678 AKQVFDDM----VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILS 733

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACAS   +   KE+H  A+  G+  DL V +ALV MYAKCG I +AR++FD M ER+  +
Sbjct: 734 ACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFS 793

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W  MI G A HG   EA++ F +M+ E  K +  S+ AVLTAC H GLV+ G+R F  M 
Sbjct: 794 WTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMT 853

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y I P  EHY CMVDLLGRAG L EA   I  M  EPD   WGALLGAC  +GN+E+A
Sbjct: 854 QDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMA 913

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E AAK   +L+P+SA+  +LL+++YA  G
Sbjct: 914 EFAAKERLKLKPKSASTYVLLSNIYAATG 942



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 225/465 (48%), Gaps = 53/465 (11%)

Query: 29  RIYFALLSGT---------QLVLSCSKSASDAGKPLINGIFI--EAHYKMPI-ISRSFHL 76
           R+YF  +SG            VL C+ ++ D      + +    +A   + I + +   +
Sbjct: 57  RLYFLSISGCFKSEKHKYLPSVLVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAI 116

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
              +Y   ++  ++   +   K +H  +I SG+ +   +A KL+  Y  C  +  AR +F
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           D++ K NI+ W  + G YA  G+ ++A+ V+ +M  +  + N     S+LKAC    ++ 
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLK 236

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G+KIH+ +++  F +D  V ++L++MY KCGS+E A+ +FD+MVE+++++   M+ G  
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTW--------------------------------- 283
             G   EA +L  ++      PN  T+                                 
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 356

Query: 284 --NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
             N L+  ++KSG       +F  M     E D+ SWT +I GL  +    EAF  F +M
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGM----TERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 412

Query: 342 LSQGFCPTSATISSIL--PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
              G  P   T  SIL   A AS + +   K +H  A   G   DL + +AL+ MYAKCG
Sbjct: 413 QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCG 472

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
            I +AR +FD M +R+ ++WN+M+ G A +G   EA  +F QM++
Sbjct: 473 SIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQ 517



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 147/280 (52%), Gaps = 7/280 (2%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           + + AL+  K +H+    +GL  L ++   L+  Y++C N+ +A+ +FD++ + N+  W 
Sbjct: 636 VDEEALEWVKEVHSHATDAGLVDL-RVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWT 694

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            + G  A+ G   +A + F +M  +G+  +     S+L AC     +   +++H+  +  
Sbjct: 695 MMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSA 754

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
              +D  V ++L+ MY+KCGS++ A+ VFD+MVE+D+ +   M+ G  Q G   EAL+  
Sbjct: 755 GLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFF 814

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
            ++ +   KPN  ++  +++  S +G  D+    +   + +  G+EP +  +T ++  L 
Sbjct: 815 VKMKSEGFKPNGYSYVAVLTACSHAGLVDEGR-RQFLSMTQDYGIEPTMEHYTCMVDLLG 873

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                +EA + F  +L+    P  A   ++L AC +  N+
Sbjct: 874 RAGLLEEA-ELF--ILNMPIEPDDAPWGALLGACVTYGNL 910



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 141/283 (49%), Gaps = 13/283 (4%)

Query: 256 VQRGLATEALNLVEEIGTPRVKP----NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
           +QR L  E + L +++    +K     N+   N L+  + + G      ++F     K +
Sbjct: 125 LQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFD----KLL 180

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           + ++  WT++I G       ++A   + +M  +   P   T  SIL AC    N++ GK+
Sbjct: 181 KKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKK 240

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           IH   I  G + D+ V +ALV+MY KCG I +A+ +FDKM ERN ++W  MI G A++G 
Sbjct: 241 IHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGR 300

Query: 432 CDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHY 489
             EA  LF QM+    + +  ++ ++L A    G +E  + + +  +     +  R  + 
Sbjct: 301 GQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN- 359

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             +V +  ++G + +A  +   M TE D+F W  ++G    HG
Sbjct: 360 -ALVHMYAKSGSIDDARVVFDGM-TERDIFSWTVMIGGLAQHG 400


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/486 (36%), Positives = 278/486 (57%), Gaps = 14/486 (2%)

Query: 81  YSERIEIYIRDR---ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
           Y+E  ++    R   A+ +G ++    +V+  ARL  +   L            A  +  
Sbjct: 201 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDAL----------ELAARMSR 250

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
             P+ N+  W  +    +R G  +EA+ V   M  QGL+ +   + S+LK+  +   +  
Sbjct: 251 SGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRH 310

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G +IH   L++    D +  ++L+DMY+KCG ++ A+KV D +  +++   N++V+GY  
Sbjct: 311 GMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYAN 370

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            G    AL LVE +   R+ P++ TWN LI+G+S +G       L + ++A GV P+VVS
Sbjct: 371 AGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVS 430

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WTS+ISG  HN   +++F    EM   G  P+  T+S +L ACA  A  ++GKE+H  A+
Sbjct: 431 WTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFAL 490

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
               + D+ V +AL+DMY+K G +  A+ +F+ + ++N V  N+M+ G A HG   EAIE
Sbjct: 491 RRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIE 550

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF+ M     K D ++FTA+LTAC  +GLV  G   F+ M+ KY + P TE+YACMVDLL
Sbjct: 551 LFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLL 610

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
            R G L EA + I+    +P    WGALL  C  HGN+ LAE+AA++L  LEP ++AN +
Sbjct: 611 ARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYL 670

Query: 557 LLTDLY 562
           L+ +LY
Sbjct: 671 LMMNLY 676



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 159/353 (45%), Gaps = 39/353 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC-QNIHHARMLFD--EIPKTNIHRWIALTGAYAR 156
           LH+  + +GL+R  ++   L+       +    AR+L +  E    +   W       A 
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAE 133

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                EA+ VF EM  +G+  + +    VL ACG    +  G  +H+  LK +      V
Sbjct: 134 AEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLV 193

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
              L  MY++   V  A +V D M    +V  NA+V+   + GL  +AL           
Sbjct: 194 PGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDAL----------- 242

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
                                   +L   M   G EP+V +W +V+SG   +  + EA  
Sbjct: 243 ------------------------ELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALG 278

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
               ML QG  P + T+SS+L + A+   +R G EIH   +   +E D++  +ALVDMYA
Sbjct: 279 VVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYA 338

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
           KCG +  A+ + D +  RN  TWNS++ G AN G  D A+EL   M ++ +LD
Sbjct: 339 KCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELM-KKNRLD 390



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 104/273 (38%), Gaps = 49/273 (17%)

Query: 342 LSQGFCPTSA-TISSILPACAS--------AANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           L  G  P SA  + S+L  CA             R   ++H  A+  G+  D  V  ALV
Sbjct: 35  LRTGVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALV 94

Query: 393 DMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           D+ A+ G       L  + +E   ++ V WN  +   A     DEAI +F +M+ R    
Sbjct: 95  DLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPA 154

Query: 449 DHLSFTAVLTACCHVGLVELGQR-------------------LFNMMQEKYKIMPRTE-- 487
           D  +   VL AC   G +  G+                    L  M  E   +   T   
Sbjct: 155 DGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVL 214

Query: 488 ---------HYACMVDLLGRAGRLAEAYEMIKTMS---TEPDLFVWGALLGACKNHG-NI 534
                     +  +V    R G + +A E+   MS    EP++  W  +L  C  HG + 
Sbjct: 215 DAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDR 274

Query: 535 ELAEIAAKHLSE-LEPESAANNMLLTDLYANAG 566
           E   + A  L + L P++   + LL  + AN G
Sbjct: 275 EALGVVASMLKQGLRPDATTVSSLLKSV-ANTG 306


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/510 (35%), Positives = 282/510 (55%), Gaps = 40/510 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H +++ +GLA    +   LI+ Y +C ++  AR +FD +   +   W  LTG
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 219

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AYA  GY QE++  +H M  +G++ +     +VL ACG L+ +  G++IH+ +++    +
Sbjct: 220 AYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHS 279

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L  MY KCG+V+ A++VF+ +  +D++A N M+ G V  G   EA  +   + 
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              V P+ VT+                                   N LI+ +SK+G   
Sbjct: 340 KECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMK 399

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F  M  +    DVVSWT+++ G        E+F TFK+ML QG      T   +L
Sbjct: 400 DARQVFDRMPKR----DVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVL 455

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC++   ++ GKEIH   +  G+  DL V +AL+ MY KCG + +A  + + MS R+ V
Sbjct: 456 KACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVV 515

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TWN++I G A +G   EA++ F  M+ E  + +  +F  V++AC    LVE G+R F  M
Sbjct: 516 TWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASM 575

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           ++ Y I+P  +HYACMVD+L RAG L EA ++I TM  +P   +WGALL AC+ HGN+E+
Sbjct: 576 RKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEI 635

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            E AA+   +LEP++A   + L+ +YA AG
Sbjct: 636 GEQAAEQCLKLEPQNAGTYVSLSFIYAAAG 665



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 236/484 (48%), Gaps = 34/484 (7%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y + ++  ++ + L  GK +H  ++  G+     I   L+  Y  C +++ AR LFD+  
Sbjct: 47  YVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             ++  W  +   YA RG  QEA  +F  M  +GL+ + F   S+L AC   + +  G +
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE 166

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H  V++     +A V ++LI MY+KCGSV  A++VFD M  +D V+   +   Y + G 
Sbjct: 167 VHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 226

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV------------------ 297
           A E+L     +    V+P+ +T+  ++S        + G Q+                  
Sbjct: 227 AQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTA 286

Query: 298 ---MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
              M  K   +  A+ V       DV++W ++I GLV +   +EA   F  ML +   P 
Sbjct: 287 LTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPD 346

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
             T  +IL ACA    +  GKEIH  A+  G+  D+   +AL++MY+K G + +AR +FD
Sbjct: 347 RVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFD 406

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVEL 468
           +M +R+ V+W +++ G A+ G   E+   F +M ++  + + +++  VL AC +   ++ 
Sbjct: 407 RMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKW 466

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G+ +   +  K  I         ++ +  + G + +A  + + MST  D+  W  L+G  
Sbjct: 467 GKEIHAEVV-KAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTLIGGL 524

Query: 529 KNHG 532
             +G
Sbjct: 525 AQNG 528



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 203/413 (49%), Gaps = 43/413 (10%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G++  A  V   +H +G + + +    +L++C    D+  G+++H  +L+     + +++
Sbjct: 24  GWYAPA-DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYII 82

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L+ +Y  CGSV +A+++FD+   K +V+ N M+SGY  RGL  EA NL   +    ++
Sbjct: 83  NTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLE 142

Query: 278 PNVVT---------------W--------------------NTLISGFSKSGDQVMVSKL 302
           P+  T               W                    N LIS ++K G      ++
Sbjct: 143 PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRV 202

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  M ++    D VSWT++      +    E+  T+  ML +G  P+  T  ++L AC S
Sbjct: 203 FDAMASR----DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGS 258

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A + +GK+IH   +      D+ V +AL  MY KCG + +AR +F+ +  R+ + WN+M
Sbjct: 259 LAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTM 318

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G  + G  +EA  +F++M +E    D +++ A+L+AC   G +  G+ + +    K  
Sbjct: 319 IGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEI-HARAVKDG 377

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
           ++        ++++  +AG + +A ++   M    D+  W AL+G   + G +
Sbjct: 378 LVSDVRFGNALINMYSKAGSMKDARQVFDRMPKR-DVVSWTALVGGYADCGQV 429



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 155/327 (47%), Gaps = 7/327 (2%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   L  GK +HA+ +  GL    +    LI  Y++  ++  AR +FD +PK ++  W A
Sbjct: 359 RPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTA 418

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L G YA  G   E+ + F +M  QG++ N      VLKAC +   +  G++IH+ V+K  
Sbjct: 419 LVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAG 478

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D  V ++L+ MY KCGSVE A +V + M  +D+V  N ++ G  Q G   EAL   E
Sbjct: 479 IFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFE 538

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHN 328
            + +  ++PN  T+  ++S            + F  MR   G+ P    +  ++  L   
Sbjct: 539 VMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARA 598

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHV 387
               EA D    +L+  F P++A   ++L AC +  N+  G++    C  +       +V
Sbjct: 599 GHLGEAEDV---ILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYV 655

Query: 388 RSALVDMYAKCGFISEARTLFDKMSER 414
             +L  +YA  G   +   L   M ER
Sbjct: 656 --SLSFIYAAAGMWRDVAKLRKLMKER 680



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 136/269 (50%), Gaps = 19/269 (7%)

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
           +KPNV   NTL+  +   G      +LF     K     VVSW  +ISG  H     EAF
Sbjct: 75  MKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNK----SVVSWNVMISGYAHRGLGQEAF 130

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + F  M  +G  P   T  SIL AC+S A +  G+E+H   +  G+  +  V +AL+ MY
Sbjct: 131 NLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMY 190

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           AKCG + +AR +FD M+ R+ V+W ++    A  GY  E+++ ++ M +E  +   +++ 
Sbjct: 191 AKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYM 250

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA------CMVDLLGRAGRLAEAYEM 508
            VL+AC  +  +E G+++   + E       +EH++       +  +  + G + +A E+
Sbjct: 251 NVLSACGSLAALEKGKQIHAQIVE-------SEHHSDVRVSTALTKMYIKCGAVKDAREV 303

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELA 537
            + +    D+  W  ++G   + G +E A
Sbjct: 304 FECLPNR-DVIAWNTMIGGLVDSGQLEEA 331



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 127/262 (48%), Gaps = 18/262 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +HA+++ +G+     +A  L++ Y +C ++  A  + + +   ++  W  L G
Sbjct: 463 ALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIG 522

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+ G   EA+  F  M  + ++ N     +V+ AC   + +  G +  + + K     
Sbjct: 523 GLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRK----- 577

Query: 213 DAFVVSS------LIDMYSKCGSVEKAKKVFDEMVEKDIVAM-NAMVSGYVQRGLATEAL 265
           D  +V +      ++D+ ++ G + +A+ V   M  K   AM  A+++     G      
Sbjct: 578 DYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGE 637

Query: 266 NLVEEIGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVIS 323
              E+    +++P N  T+ +L   ++ +G    V+KL +LM+ +GV+ +   SW  V +
Sbjct: 638 QAAEQ--CLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEV-A 694

Query: 324 GLVHNF-CNDEAFDTFKEMLSQ 344
           G VH+F   D++    +E+ S+
Sbjct: 695 GEVHSFVAGDQSHPRTEEIYSE 716


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/486 (36%), Positives = 278/486 (57%), Gaps = 14/486 (2%)

Query: 81  YSERIEIYIRDR---ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
           Y+E  ++    R   A+ +G ++    +V+  ARL  +   L            A  +  
Sbjct: 201 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDAL----------ELAARMSR 250

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
             P+ N+  W  +    +R G  +EA+ V   M  QGL+ +   + S+LK+  +   +  
Sbjct: 251 SGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRH 310

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G +IH   L++    D +  ++L+DMY+KCG ++ A+KV D +  +++   N++V+GY  
Sbjct: 311 GMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYAN 370

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            G    AL LVE +   R+ P++ TWN LI+G+S +G       L + ++A GV P+VVS
Sbjct: 371 AGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVS 430

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WTS+ISG  HN   +++F    EM   G  P+  T+S +L ACA  A  ++GKE+H  A+
Sbjct: 431 WTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFAL 490

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
               + D+ V +AL+DMY+K G +  A+ +F+ + ++N V  N+M+ G A HG   EAIE
Sbjct: 491 RRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIE 550

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF+ M     K D ++FTA+LTAC  +GLV  G   F+ M+ KY + P TE+YACMVDLL
Sbjct: 551 LFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLL 610

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
            R G L EA + I+    +P    WGALL  C  HGN+ LAE+AA++L  LEP ++AN +
Sbjct: 611 ARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYL 670

Query: 557 LLTDLY 562
           L+ +LY
Sbjct: 671 LMMNLY 676



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 159/353 (45%), Gaps = 39/353 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC-QNIHHARMLFD--EIPKTNIHRWIALTGAYAR 156
           LH+  + +GL+R  ++   L+       +    AR+L +  E    +   W       A 
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAE 133

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                EA+ VF EM  +G+  + +    VL ACG    +  G  +H+  LK +      V
Sbjct: 134 AEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLV 193

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
              L  MY++   V  A +V D M    +V  NA+V+   + GL  +AL           
Sbjct: 194 PGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDAL----------- 242

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
                                   +L   M   G EP+V +W +V+SG   +  + EA  
Sbjct: 243 ------------------------ELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALG 278

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
               ML QG  P + T+SS+L + A+   +R G EIH   +   +E D++  +ALVDMYA
Sbjct: 279 VVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYA 338

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
           KCG +  A+ + D +  RN  TWNS++ G AN G  D A+EL   M ++ +LD
Sbjct: 339 KCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELM-KKNRLD 390



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 104/273 (38%), Gaps = 49/273 (17%)

Query: 342 LSQGFCPTSA-TISSILPACAS--------AANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           L  G  P SA  + S+L  CA             R   ++H  A+  G+  D  V  ALV
Sbjct: 35  LRTGVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALV 94

Query: 393 DMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           D+ A+ G       L  + +E   ++ V WN  +   A     DEAI +F +M+ R    
Sbjct: 95  DLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPA 154

Query: 449 DHLSFTAVLTACCHVGLVELGQR-------------------LFNMMQEKYKIMPRTE-- 487
           D  +   VL AC   G +  G+                    L  M  E   +   T   
Sbjct: 155 DGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVL 214

Query: 488 ---------HYACMVDLLGRAGRLAEAYEMIKTMS---TEPDLFVWGALLGACKNHG-NI 534
                     +  +V    R G + +A E+   MS    EP++  W  +L  C  HG + 
Sbjct: 215 DAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDR 274

Query: 535 ELAEIAAKHLSE-LEPESAANNMLLTDLYANAG 566
           E   + A  L + L P++   + LL  + AN G
Sbjct: 275 EALGVVASMLKQGLRPDATTVSSLLKSV-ANTG 306


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 285/502 (56%), Gaps = 41/502 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA +I++G+        KLI  Y    +I  AR +FD+ P+  +  W A+  AY+RRG 
Sbjct: 26  IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
             EA++++H M  +G++ +      VLKAC    D+ +GE+     +   +G D FV ++
Sbjct: 86  MFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAA 145

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP- 278
           ++++Y+KCG +++A +VFD+M  +D+V    M++G  Q G A EA+++  ++   RV+  
Sbjct: 146 VLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGD 205

Query: 279 ----------------------------------NVVTWNTLISGFSKSGDQVMVSKLFQ 304
                                             +V+   +L+  ++K+G   + S +F+
Sbjct: 206 GVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFR 265

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M  K    +V+SW+++ISG   N     A     +M S G+ P S ++ S+L AC+   
Sbjct: 266 RMLYK----NVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVG 321

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            ++ GK +HG  IV  +  D    +A++DMY+KCG +S ART+FD++S R++++WN++I 
Sbjct: 322 FLKLGKSVHG-YIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIA 380

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
               HG  +EA+ LF QM E   K DH +F ++L+A  H GLVE G+  F++M  +YKI 
Sbjct: 381 SYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQ 440

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P  +HYACMVDLL RAGR+ EA E+I++M TEP + +W ALL  C NHG   + E+AAK 
Sbjct: 441 PSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKK 500

Query: 544 LSELEPESAANNMLLTDLYANA 565
           + EL P+      L+++ +A A
Sbjct: 501 VLELNPDDPGIYSLVSNFFATA 522



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 181/384 (47%), Gaps = 32/384 (8%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           + Y+  ++   R   L+SG+    Q +  G      +   ++  Y +C  +  A  +FD+
Sbjct: 106 STYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDK 165

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           + + ++  W  +    A+ G  +EAV ++ +MH + ++ +  V+  +++AC  L     G
Sbjct: 166 MGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMG 225

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
             IH  +++     D  V +SL+DMY+K G +E A  VF  M+ K++++ +A++SG+ Q 
Sbjct: 226 LSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQN 285

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLI-----SGFSKSGDQV---------------- 297
           G A  AL LV ++ +   KP+ V+  +++      GF K G  V                
Sbjct: 286 GFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSST 345

Query: 298 ----MVSKLFQLMRAKGVEP-----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
               M SK   L  A+ V       D +SW ++I+    +   +EA   F +M      P
Sbjct: 346 AVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKP 405

Query: 349 TSATISSILPACASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             AT +S+L A + +  + +G+      +    ++      + +VD+ ++ G + EA+ L
Sbjct: 406 DHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQEL 465

Query: 408 FDKM-SERNTVTWNSMIFGCANHG 430
            + M +E     W +++ GC NHG
Sbjct: 466 IESMITEPGIAIWVALLSGCLNHG 489



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 141/316 (44%), Gaps = 40/316 (12%)

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           LI  +++ G      ++F     K  +  V +W ++I          EA   +  M S+G
Sbjct: 45  LIQSYARLGHIESARQVFD----KSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEG 100

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P S+T + +L AC  + ++R G+E    A+  G   D+ V +A++++YAKCG + EA 
Sbjct: 101 VRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAM 160

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVG 464
            +FDKM  R+ V W +MI G A +G   EA++++ QM ++R + D +    ++ AC  +G
Sbjct: 161 RVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLG 220

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL---------------------- 502
             ++G  +   M  K  IM      + +VD+  + G L                      
Sbjct: 221 HSKMGLSIHGYMIRKDIIMDVIVQTS-LVDMYAKNGHLELASCVFRRMLYKNVISWSALI 279

Query: 503 ---------AEAYEMIKTMST---EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
                      A +++  M +   +PD     ++L AC   G ++L +    ++      
Sbjct: 280 SGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHF 339

Query: 551 SAANNMLLTDLYANAG 566
              ++  + D+Y+  G
Sbjct: 340 DCVSSTAVIDMYSKCG 355



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           +IH   I+ G+ G  +  + L+  YA+ G I  AR +FDK  +     WN+MI   +  G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 431 YCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
              EA+ L+++M  E  + D  ++T VL AC     +  G+  +    ++          
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQ-GYGDDVFVG 143

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           A +++L  + G++ EA  +   M    DL  W  ++     +G 
Sbjct: 144 AAVLNLYAKCGKMDEAMRVFDKMGRR-DLVCWTTMITGLAQNGQ 186


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/505 (35%), Positives = 269/505 (53%), Gaps = 32/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH   +  GL   + +A  L+  Y++CQ +  AR LFD +P++++  W  +   
Sbjct: 175 LDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISG 234

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G   EA  +F  M   G+K +     S L     L  +   ++IH  +++H+   D
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLD 294

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F+ S+LID+Y KC  VE A+K   +    D V    M+SGYV  G   EAL     +  
Sbjct: 295 VFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ 354

Query: 274 PRVKPNVVTWNTLISGF------------------SKSGDQVMVSKLFQLMRAKG----- 310
            R+KP  VT++++   F                  +K  ++  V      M AK      
Sbjct: 355 ERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDL 414

Query: 311 --------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E D + W S+I+    N    EA + F++M  +G      +IS  L ACA+
Sbjct: 415 ACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACAN 474

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GKEIHG  I   +  DL+  S+L+DMYAKCG ++ +R +FD+M E+N V+WNS+
Sbjct: 475 LPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSI 534

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I    NHG   E + LF++M     + DH++F  +++AC H G V+ G R +++M E+Y 
Sbjct: 535 ISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYG 594

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I  R EHYAC+ D+ GRAGRL EA+E I +M   PD  VWG LLGAC  HGN+ELAE+A+
Sbjct: 595 IPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVAS 654

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           KHL +L+P ++   +LL ++ A AG
Sbjct: 655 KHLFDLDPLNSGYYVLLANVQAGAG 679



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 146/478 (30%), Positives = 248/478 (51%), Gaps = 38/478 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++++ GKI+H  + + GL     + + LI  Y E  ++  A+ LFD IP+ +   W  + 
Sbjct: 72  KSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVML 131

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y + G    A+ +F EM    +K N      VL  C   + +  G ++H + +     
Sbjct: 132 NGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLE 191

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D+ V ++L+ MYSKC  ++ A+K+FD + + D+V+ N ++SGYVQ GL  EA +L   +
Sbjct: 192 LDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM 251

Query: 272 GTPRVKPNVVTW-------NTLIS--------GF----SKSGDQVMVSKLFQL-MRAKGV 311
            +  +KP+ +T+       N L+S        G+    +   D  + S L  +  + + V
Sbjct: 252 ISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311

Query: 312 EP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           E            D V  T++ISG V N  N EA + F+ ++ +   PTS T SSI PA 
Sbjct: 312 EMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAF 371

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           A  A +  GKE+HG  I   ++   HV SA++DMYAKCG +  A  +F++++E++ + WN
Sbjct: 372 AGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWN 431

Query: 421 SMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           SMI  C+ +G   EAI LF QM  E  + D +S +  L+AC ++  +  G+ +  +M   
Sbjct: 432 SMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLM--- 488

Query: 480 YKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
            K   R++ YA   ++D+  + G L  +  +   M  E +   W +++ A  NHG+++
Sbjct: 489 IKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ-EKNEVSWNSIISAYGNHGDLK 545



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 206/446 (46%), Gaps = 42/446 (9%)

Query: 123 YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
           Y    ++  A+ LF  +       W  +   +   G    A+  + +M   G+  + +  
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
           P V+KAC  L  +  G+ +H  V       D FV SSLI +Y++ G +  A+ +FD + +
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------- 283
           KD V  N M++GYV+ G +  A+ +  E+    +KPN VT+                   
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 284 ----------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                           NTL++ +SK        KLF  +     + D+VSW  +ISG V 
Sbjct: 182 HGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP----QSDLVSWNGIISGYVQ 237

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N    EA   F+ M+S G  P S T +S LP      +++  KEIHG  I   V  D+ +
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFL 297

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
           +SAL+D+Y KC  +  A+    + S  +TV   +MI G   +G   EA+E F  + +ER 
Sbjct: 298 KSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERM 357

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           K   ++F+++  A   +  + LG+ L   +  K K+  +    + ++D+  + GRL  A 
Sbjct: 358 KPTSVTFSSIFPAFAGLAALNLGKELHGSII-KTKLDEKCHVGSAILDMYAKCGRLDLAC 416

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHG 532
            +   + TE D   W +++ +C  +G
Sbjct: 417 RVFNRI-TEKDAICWNSMITSCSQNG 441



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           MY + G + +A+ LF  +    T  WN MI G    G  + A+  + +M       D  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY---ACMVDLLGRAGRLAEAYEMI 509
           F  V+ ACC +  V++G+    ++ E   +M   E     + ++ L    G L++A  + 
Sbjct: 61  FPYVVKACCGLKSVKMGK----IVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116

Query: 510 KTMSTEPDLFVWGALL-GACKN--HGNIELAEIAAKHLSELEPES 551
             +  + D  +W  +L G  KN   GN     +  +H SE++P S
Sbjct: 117 DNI-PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRH-SEIKPNS 159


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 174/476 (36%), Positives = 282/476 (59%), Gaps = 17/476 (3%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF---YTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           K +HA LI+ G     + A + + F    T    I++A  +F +I + +I  W  +    
Sbjct: 30  KQIHATLIIKGFNS-NRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGS 88

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           ++     + V ++ +M  +G+K + F    +LK C  L    TG  +H  VLK+ F  ++
Sbjct: 89  SQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNS 148

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           FV ++LI  +S CG +  A+ +F ++ E+ +V+ +A+ +GY +RG    A  + +E+   
Sbjct: 149 FVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVK 208

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
               ++V+WN +I+G+ K+G+      LF     +  E DVV+W ++I+G V      +A
Sbjct: 209 ----DLVSWNVMITGYVKNGEMENARTLFD----EAPEKDVVTWNTMIAGYVLRGEQRQA 260

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV--RSALV 392
            + F+EM + G CP   T+ S+L ACA   +++ G+++H C+I     GDL V   +ALV
Sbjct: 261 LEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLH-CSISEMTRGDLSVLLGNALV 319

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLDH 450
           DMYAKCG I  A  +F KM E++  TWNS+I G A HG+ +E+I+LF +M+  K  K + 
Sbjct: 320 DMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNE 379

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F  V+ AC H G VE G+R F +M+E+Y I P   H+ CMVDLLGRAG L+EA+E+I 
Sbjct: 380 ITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIA 439

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  EP+  +W  LLGAC+ HGN+EL  +A + L +L  + + + +LL+++YA+AG
Sbjct: 440 KMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAG 495



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 157/375 (41%), Gaps = 82/375 (21%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           ++G  +H +++  G    + +   LI F++ C ++  AR +F ++P+ ++  W ALT  Y
Sbjct: 130 KTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGY 189

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           ARRG    A  +F EM ++                                       D 
Sbjct: 190 ARRGELGVARQIFDEMPVK---------------------------------------DL 210

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
              + +I  Y K G +E A+ +FDE  EKD+V  N M++GYV RG   +AL + EE+   
Sbjct: 211 VSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNV 270

Query: 275 RVKPNVVTW------------------------------------NTLISGFSKSGDQVM 298
              P+ VT                                     N L+  ++K G   +
Sbjct: 271 GECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEI 330

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSIL 357
             ++F+ MR    E DV +W SVI GL  +   +E+   F EM + +   P   T   ++
Sbjct: 331 ALQVFKKMR----EKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVI 386

Query: 358 PACASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            AC+ A N+  G+           +E ++     +VD+  + G +SEA  L  KM  E N
Sbjct: 387 VACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPN 446

Query: 416 TVTWNSMIFGCANHG 430
            + W +++  C  HG
Sbjct: 447 AIIWRTLLGACRVHG 461


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 175/478 (36%), Positives = 279/478 (58%), Gaps = 11/478 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++ + +H+++I   L   + +  KL+  Y   +++  AR +FDEIP+ N+     +  +
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRS 115

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G+++E + VF  M    +K + +  P VLKAC    +I  G+KIH    K    + 
Sbjct: 116 YVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSST 175

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV + L+ MY KCG + +A+ V DEM  +D+V+ N++V+GY Q     +AL +  E+ +
Sbjct: 176 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMES 235

Query: 274 PRVKPNVVTWNTLISGFSKSG-DQVM-VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
            ++  +  T  +L+   S +  + VM V  +F  M  K +    VSW  +I   + N   
Sbjct: 236 VKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSL----VSWNVMIGVYMKNAMP 291

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            EA + +  M + GF P + +I+S+LPAC   + +  GK+IHG      +  +L + +AL
Sbjct: 292 VEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENAL 351

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAIELFNQMEERKKL- 448
           +DMYAKCG +  AR +F+ M  R+ V+W +MI  +G +  G CD A+ LF++M++   + 
Sbjct: 352 IDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRG-CD-AVALFSKMQDSGLVP 409

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++F   L AC H GL+E G+  F +M + YKI PR EH ACMVDLLGRAG++ EAY+ 
Sbjct: 410 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKF 469

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I+ M  EP+  VWGALLGAC+ H N ++  +AA  L +L PE +   +LL+++YA AG
Sbjct: 470 IQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 527



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 171/384 (44%), Gaps = 70/384 (18%)

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
           K+  F++  VL       D+ T   +HS ++      ++ +   L+  Y+    V  A+K
Sbjct: 40  KETAFMLGQVLDT---YPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARK 96

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           VFDE+ E++++ +N M+  YV  G   E + +   + +  VKP+  T+  ++   S SG+
Sbjct: 97  VFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGN 156

Query: 296 QV-------------MVSKLF------------------QLMRAKGVEPDVVSWTSVISG 324
            V             + S LF                  +L+  +    DVVSW S+++G
Sbjct: 157 IVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAG 216

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
              N   D+A +  +EM S      + T++S+LPA ++                   E  
Sbjct: 217 YAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT----------------TENV 260

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME- 443
           ++V+                  +F KM +++ V+WN MI     +    EA+EL++ ME 
Sbjct: 261 MYVKD-----------------MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEA 303

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
           +  + D +S T+VL AC     + LG+++   ++ K K++P       ++D+  + G L 
Sbjct: 304 DGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK-KLIPNLLLENALIDMYAKCGCLD 362

Query: 504 EAYEMIKTMSTEPDLFVWGALLGA 527
            A ++ + M +  D+  W A++ A
Sbjct: 363 RARDVFENMKSR-DVVSWTAMISA 385



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 153/378 (40%), Gaps = 35/378 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +H  +    L     +   LI  Y +C  +  AR +F+ +   ++  W A+  
Sbjct: 325 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMIS 384

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY   G   +AV +F +M   GL  +     + L AC H   +  G     L+  H   T
Sbjct: 385 AYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 444

Query: 213 DAFV-VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                ++ ++D+  + G V++A K   EM +E +     A++     R  +   + L+  
Sbjct: 445 PRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGAC--RVHSNTDIGLLAA 502

Query: 271 IGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
               ++ P    +  L+S  ++K+G    V+ +  +M++KG++ +  +    ++ ++H F
Sbjct: 503 DKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTF 562

Query: 330 -----CNDEAFDTFKE-------MLSQGFCPTSATISSILPACASAANMRRGKEIH---- 373
                 + ++ + ++E       M   G+ P S +        A        KE H    
Sbjct: 563 LVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSES--------ALHDVEEEDKETHLAVH 614

Query: 374 --GCAIVMGV----EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
               AIV  +    E D +    +      CG    A  L  +++ R  +  ++  F   
Sbjct: 615 SEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVF 674

Query: 428 NHGYCDEAIELFNQMEER 445
             G C  A EL ++  ER
Sbjct: 675 RFGVCSCASELRDRESER 692


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 283/524 (54%), Gaps = 45/524 (8%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           A +  I+ Y + + L+ GK LHA LI +G    T +   L+  Y++C  + HA  LFD +
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P+ N+  W A+    ++     EA+  F  M I G     F   S ++AC  L  I  G+
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H L LK   G++ FV S+L DMYSKCG++  A KVF+EM  KD V+  AM+ GY + G
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 186

Query: 260 LATEAL----NLVEE---------------------------IGTPRVK----PNVVTWN 284
              EAL     +++E                           + +  VK     ++   N
Sbjct: 187 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGN 246

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCNDEAFDTFKEM 341
            L   +SK+GD    S +F      G++ +   VVS+T +I G V     ++    F E+
Sbjct: 247 ALTDMYSKAGDMESASNVF------GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             QG  P   T SS++ ACA+ A + +G ++H   + +  + D  V S LVDMY KCG +
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
            +A   FD++ +   + WNS++     HG   +AI++F +M +R  K + ++F ++LT C
Sbjct: 361 EQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGC 420

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            H GLVE G   F  M + Y ++P  EHY+C++DLLGRAGRL EA E I  M  EP+ F 
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 480

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           W + LGAC+ HG+ E+ ++AA+ L +LEP+++   +LL+++YAN
Sbjct: 481 WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 524


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 172/475 (36%), Positives = 274/475 (57%), Gaps = 1/475 (0%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            AL  GK  HA  I++ L     + + +I FY++   I  A ++F  + + ++  W  L  
Sbjct: 1393 ALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLIS 1452

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +Y +     +A+ + H M  + L+ +   + S+L A    S+I  G++ H   ++ +  +
Sbjct: 1453 SYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLES 1512

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            D  V +S+IDMY+KC  ++ A+KVFD   E+D+V  N +++ Y Q GL+ EAL L  ++ 
Sbjct: 1513 DVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQ 1572

Query: 273  TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               V PNV++WN++I GF ++G       +F  M++ G +P++++WT++ISGL  +    
Sbjct: 1573 FDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGY 1632

Query: 333  EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            EA   F++M   G  P+ A+I+S+L AC    ++  G+ IHG          + V ++LV
Sbjct: 1633 EAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLV 1692

Query: 393  DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
            DMYAKCG I EA+ +F  MS +    +N+MI   A HG   EA+ LF  ++ E  + D +
Sbjct: 1693 DMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSI 1752

Query: 452  SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
            +FT++L+AC H GLV  G  LF  M  K+ + P  EHY C+V LL R G L EA  +I T
Sbjct: 1753 TFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILT 1812

Query: 512  MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  + G+LL AC+ H  IEL E  +KHL +LEP ++ N + L++ YA AG
Sbjct: 1813 MPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAG 1867



 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 160/494 (32%), Positives = 262/494 (53%), Gaps = 38/494 (7%)

Query: 74   FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNIHH 131
            F + P  Y E ++  + +RAL +G+ +HA+++ +G   A+   + TKL+ FY +C     
Sbjct: 1170 FQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEV 1229

Query: 132  ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
            A  LF  +   N+  W A+ G   R G+ ++A+  F EM   G+  + FV+P+VLKACG 
Sbjct: 1230 AVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGS 1289

Query: 192  LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
            L  IG G+ +H  VLK  FG   FV SSL+DMY KCG +E A+KVFD MVEK++V  N+M
Sbjct: 1290 LQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSM 1349

Query: 252  VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--------KSG--------- 294
            + GYVQ GL  EA+++  ++    ++P  VT  + +S  +        K G         
Sbjct: 1350 IVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSL 1409

Query: 295  --DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
              D ++ S +             +L+ ++ +E DVV+W  +IS  V +    +A +    
Sbjct: 1410 DLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHL 1469

Query: 341  MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
            M S+     S T+SSIL A A  +N++ GKE H   I   +E D+ V ++++DMYAKC  
Sbjct: 1470 MRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCER 1529

Query: 401  ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
            I +AR +FD  +ER+ V WN+++   A  G   EA++LF QM+ +    + +S+ +V+  
Sbjct: 1530 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILG 1589

Query: 460  CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEP 516
                G V   + +F+ MQ      P    +  ++  L ++G   EA   ++ ++     P
Sbjct: 1590 FLRNGQVNEAKDMFSQMQ-SLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRP 1648

Query: 517  DLFVWGALLGACKN 530
             +    ++L AC +
Sbjct: 1649 SIASITSVLLACTD 1662



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 208/444 (46%), Gaps = 55/444 (12%)

Query: 156  RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
            + G+ QE+V +  EM  +  +    +   +L+ C +   + TG++IH+ +LK+   F  +
Sbjct: 1151 KDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKN 1210

Query: 214  AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             +V + L+  Y+KC   E A ++F  +  +++ +  A+V    + G + +AL    E+  
Sbjct: 1211 EYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQE 1270

Query: 274  PRVKPN-----------------------------------VVTWNTLISGFSKSGDQVM 298
              V P+                                   V   ++L+  + K G    
Sbjct: 1271 NGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLED 1330

Query: 299  VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              K+F  M    VE +VV+W S+I G V N  N EA D F +M  +G  PT  T++S L 
Sbjct: 1331 ARKVFDSM----VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLS 1386

Query: 359  ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
            A A+   +  GK+ H  AI+  ++ D  + S++++ Y+K G I +A  +F +M E++ VT
Sbjct: 1387 ASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVT 1446

Query: 419  WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
            WN +I     H    +A+ + + M  E  + D ++ +++L+A      ++LG+       
Sbjct: 1447 WNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKE-----G 1501

Query: 478  EKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
              Y I    E        ++D+  +  R+ +A ++  + +TE DL +W  LL A   +  
Sbjct: 1502 HCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDS-TTERDLVLWNTLLAA---YAQ 1557

Query: 534  IELAEIAAKHLSELEPESAANNML 557
            + L+  A K   +++ +S   N++
Sbjct: 1558 VGLSGEALKLFYQMQFDSVPPNVI 1581


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 179/515 (34%), Positives = 275/515 (53%), Gaps = 39/515 (7%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           I+ Y R + L  GK LHA LI  G    T ++   +  Y++C  + +   LFD++ + N+
Sbjct: 82  IQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNM 141

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W ++   +A     QEA++ F +M I+G     F + SVL+AC  L  I  G ++H L
Sbjct: 142 VSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCL 201

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V+K  FG + FV S+L DMYSKCG +  A K F+EM  KD V   +M+ G+V+ G   +A
Sbjct: 202 VVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKA 261

Query: 265 LNLVEEIGTPRV-----------------------------------KPNVVTWNTLISG 289
           L    ++ T  V                                   +      N L   
Sbjct: 262 LTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDM 321

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           +SKSGD V  S +FQ+         +VS T++I G V     ++A  TF ++  +G  P 
Sbjct: 322 YSKSGDMVSASNVFQIHSDC---ISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPN 378

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
             T +S++ ACA+ A +  G ++HG  +    + D  V S LVDMY KCG    +  LFD
Sbjct: 379 EFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFD 438

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVEL 468
           ++   + + WN+++   + HG    AIE FN M  R  K + ++F  +L  C H G+VE 
Sbjct: 439 EIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVED 498

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G   F+ M++ Y ++P+ EHY+C++DLLGRAG+L EA + I  M  EP++F W + LGAC
Sbjct: 499 GLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGAC 558

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           K HG++E A+ AA  L +LEPE++  ++LL+++YA
Sbjct: 559 KIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYA 593



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 176/390 (45%), Gaps = 45/390 (11%)

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
            +  +++      ++  G+++H+++++     + F+ +  +++YSKCG ++   K+FD+M
Sbjct: 77  TVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKM 136

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALN------LVEEIGTPRVKPNVVTWNT--------- 285
            ++++V+  ++++G+       EAL+      +  EI T     +V+   T         
Sbjct: 137 SQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGT 196

Query: 286 --------------------LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                               L   +SK G+     K F+ M  K    D V WTS+I G 
Sbjct: 197 QVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCK----DAVLWTSMIDGF 252

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           V N    +A   + +M++         + S L AC++      GK +H   + +G E + 
Sbjct: 253 VKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYET 312

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
            + +AL DMY+K G +  A  +F   S+  + V+  ++I G       ++A+  F  +  
Sbjct: 313 FIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRR 372

Query: 445 RK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           R  + +  +FT+++ AC +   +E G +L   +++  +K  P     + +VD+ G+ G  
Sbjct: 373 RGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCGLF 430

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             + ++   +   PD   W  L+G    HG
Sbjct: 431 DHSIQLFDEIEN-PDEIAWNTLVGVFSQHG 459



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 159/362 (43%), Gaps = 58/362 (16%)

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVK----PNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
           V+  +Q    T+ LN  +++    ++    PN    N  ++ +SK G+     KLF  M 
Sbjct: 78  VAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMS 137

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            +    ++VSWTS+I+G  HN    EA  +F +M  +G   T   +SS+L AC S   ++
Sbjct: 138 QR----NMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            G ++H   +  G   +L V S L DMY+KCG +S+A   F++M  ++ V W SMI G  
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 428 NHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACC-----------HVGLVEL------- 468
            +G   +A+  + +M  +   +D     + L+AC            H  +++L       
Sbjct: 254 KNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETF 313

Query: 469 -GQRLFNMMQEKYKIMPRTE----HYAC--MVDLLGRAGRLAEAYEMIKTMST------- 514
            G  L +M  +   ++  +     H  C  +V L        E  ++ K +ST       
Sbjct: 314 IGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRR 373

Query: 515 --EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM--------LLTDLYAN 564
             EP+ F + +L+ AC N   +E       H S+L  +    N          L D+Y  
Sbjct: 374 GIEPNEFTFTSLIKACANQAKLE-------HGSQLHGQVVKFNFKRDPFVSSTLVDMYGK 426

Query: 565 AG 566
            G
Sbjct: 427 CG 428



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 105/211 (49%), Gaps = 8/211 (3%)

Query: 334 AFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +F   K +   G     + T++ ++   A    + +GK++H   I  G   +  + +  +
Sbjct: 58  SFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFL 117

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
           ++Y+KCG +     LFDKMS+RN V+W S+I G A++    EA+  F QM  E +     
Sbjct: 118 NLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQF 177

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMI 509
           + ++VL AC  +G ++ G ++  ++    K     E +  + + D+  + G L++A +  
Sbjct: 178 ALSSVLQACTSLGAIQFGTQVHCLV---VKCGFGCELFVGSNLTDMYSKCGELSDACKAF 234

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           + M  + D  +W +++     +G+ + A  A
Sbjct: 235 EEMPCK-DAVLWTSMIDGFVKNGDFKKALTA 264


>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
 gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 270/472 (57%), Gaps = 41/472 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H  ++  GL     +   LI+FY++C  +  AR LFD++ + ++  W ++   YA+
Sbjct: 143 GKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGYAQ 202

Query: 157 RGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
            G+ +E   ++ EM  + G K N   + SVL+AC    D+  G ++H  ++ +    D  
Sbjct: 203 AGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDVL 262

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LI +Y+KCGS++ A+++FDEM EKD V   A++SGY+  G+  + +          
Sbjct: 263 VCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGM---------- 312

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                                    +LF+ M+++ +     +W +VISGLV N  ++   
Sbjct: 313 -------------------------ELFREMKSRVLS----TWNAVISGLVQNNRHEGVV 343

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           D  +EM   GF P + T+SS+LP  +  +N++ GKEIHG A+  G + +++V +A++D Y
Sbjct: 344 DLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEIHGYAVKNGYDRNIYVATAIIDTY 403

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           AK GF+  A+ +FD+  ER+ + W ++I   A HG  + A+  F++M     + DH++FT
Sbjct: 404 AKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDANSALTFFDEMLSNGIQPDHVTFT 463

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVL AC H G+V+    +FN M +KY I P  EHYACMV +LGRAGRL++A E I TM  
Sbjct: 464 AVLAACAHCGMVDKAWEIFNSMSKKYGIQPLGEHYACMVGVLGRAGRLSQATEFISTMPI 523

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           EP+  VWGALL       ++EL + A  HL E+EPE+  N  ++ +LY+ AG
Sbjct: 524 EPNAKVWGALLHGASLCVDVELGKFACDHLFEIEPENTGNYAIMANLYSQAG 575



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 43/203 (21%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H   + +G  R   +AT +I  Y +   +  A+ +FD+  + ++  W A+  A
Sbjct: 374 LKGGKEIHGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISA 433

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A  G    A+T F EM   G++ +     +VL AC H                      
Sbjct: 434 HAAHGDANSALTFFDEMLSNGIQPDHVTFTAVLAACAH---------------------- 471

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA-----MNAMVSGYVQRGLATEALNLV 268
                        CG V+KA ++F+ M +K  +         MV    + G  ++A    
Sbjct: 472 -------------CGMVDKAWEIFNSMSKKYGIQPLGEHYACMVGVLGRAGRLSQA---T 515

Query: 269 EEIGTPRVKPNVVTWNTLISGFS 291
           E I T  ++PN   W  L+ G S
Sbjct: 516 EFISTMPIEPNAKVWGALLHGAS 538


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 178/483 (36%), Positives = 275/483 (56%), Gaps = 14/483 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G ++H + +VSG +    +   L+  Y  C  +  AR +F+ + K ++  W  +   
Sbjct: 200 LNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISG 259

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + + G  +EA+ VF+ M    ++ +   I S L +CG+L ++  G K+H LV K+     
Sbjct: 260 WFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEK 319

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L+DMYS+CG +++A  VF E  EKD++   +M++GY+  G A  AL L   +  
Sbjct: 320 IEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQL 379

Query: 274 PRVKPNVVTWNTLISG-------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
             V PN VT  +L+S        ++K      VS  FQ+  AK  +   V W +++SGL+
Sbjct: 380 DGVVPNAVTLASLLSACASLCYMYAKCN---AVSYSFQVF-AKTSKKRTVPWNALLSGLI 435

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
           HN    EA   FK ML +      AT +S++PA A  A++++   +H   +  G    + 
Sbjct: 436 HNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIA 495

Query: 387 VRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHGYCDEAIELFNQM-E 443
           V + L+DMY+KCG +  A  +FD++   E++ + W+ +I G   HG+ + A+ LFNQM  
Sbjct: 496 VITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVH 555

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              + + ++FT+VL AC H GLV+ G  LF  M E Y   P   HY C+VDLLGRAGRL 
Sbjct: 556 SGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLD 615

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EAY++IK+M  + +  +WGALLGAC  H N+EL E+AA+ L ELEPES  N +LL ++YA
Sbjct: 616 EAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYA 675

Query: 564 NAG 566
             G
Sbjct: 676 AVG 678



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 220/492 (44%), Gaps = 76/492 (15%)

Query: 88  YIRDRALQSGKILHAQLIVSGL---ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           Y   R+L   KILH   I SGL        + + L   Y  C  +  AR LFD++   ++
Sbjct: 89  YAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSL 148

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
             W A+   Y  +G+H +A+ VF  M   G    + +  P V+KAC  +S +  G  IH 
Sbjct: 149 FLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHG 208

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
             L   F ++ FV +SL+ MY  CG V  A++VF+ M+++ +V+ N M+SG+ Q G   E
Sbjct: 209 RALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEE 268

Query: 264 ALNLVEEIGTPRVKPNVVTW-----------------------------------NTLIS 288
           AL +   +   RV+P+  T                                    N L+ 
Sbjct: 269 ALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVD 328

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
            +S+ G     S +F    A+  E DV++WTS+I+G + N     A      M   G  P
Sbjct: 329 MYSRCGGIDEASLVF----AETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVP 384

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
            + T++S+L ACAS                            L  MYAKC  +S +  +F
Sbjct: 385 NAVTLASLLSACAS----------------------------LCYMYAKCNAVSYSFQVF 416

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVE 467
            K S++ TV WN+++ G  ++    EA+ LF  M  E  + +H +F +V+ A  +  L +
Sbjct: 417 AKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPA--YAILAD 474

Query: 468 LGQRL-FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM-STEPDLFVWGALL 525
           L Q +  +    +   + +      ++D+  + G L  A+++   + + E D+ VW  L+
Sbjct: 475 LKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLI 534

Query: 526 GACKNHGNIELA 537
                HG+ E A
Sbjct: 535 AGYGMHGHGETA 546



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           A ++  I  Y     L+    LH+ L+ SG      + T LI  Y++C ++ +A  +FDE
Sbjct: 460 ATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDE 519

Query: 139 IP--KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           IP  + +I  W  L   Y   G+ + AV +F++M   G++ N     SVL AC H   + 
Sbjct: 520 IPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVD 579

Query: 197 TGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
            G  +   +++ ++ +       + ++D+  + G +++A  +   M
Sbjct: 580 DGLTLFKYMIE-NYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSM 624


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/476 (38%), Positives = 280/476 (58%), Gaps = 11/476 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L++GK   A  +  G+A    ++ + ++  Y +   I  AR LFD + + N+  W A+  
Sbjct: 188 LRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMID 247

Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            Y + G+ ++   +F  M  +G +K N   +  + KAC        G +IH LV +    
Sbjct: 248 GYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLE 307

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ +SL+ MYSK G + +AK VF  M  KD V+ N++++G VQR   +EA  L E++
Sbjct: 308 FDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKM 367

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  ++V+W  +I GFS  G+     +LF +M     E D ++WT++IS  V N   
Sbjct: 368 PGK----DMVSWTDMIKGFSGKGEISKCVELFGMMP----EKDNITWTAMISAFVSNGYY 419

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F +ML +  CP S T SS+L A AS A++  G +IHG  + M +  DL V+++L
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
           V MY KCG  ++A  +F  +SE N V++N+MI G + +G+  +A++LF+ +E   K+ + 
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F A+L+AC HVG V+LG + F  M+  Y I P  +HYACMVDLLGR+G L +A  +I 
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIS 599

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           TM  +P   VWG+LL A K H  ++LAE+AAK L ELEP+SA   ++L+ LY+  G
Sbjct: 600 TMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIG 655



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 178/358 (49%), Gaps = 21/358 (5%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           N+  A  +F ++   +I  WIA+  AYA  G   +A  VF EM ++       +I +++K
Sbjct: 65  NLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIK 124

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK--DI 245
              +  D+G   ++   + +     +A   +++I  + + G  ++A+ ++ E   K  D 
Sbjct: 125 ---NKCDLGKAYELFCDIPEK----NAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDS 177

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           VA N ++SGY++ G   EA+ + + +        VV+ ++++ G+ K G  V    LF  
Sbjct: 178 VASNVLLSGYLRAGKWNEAVRVFQGMAVKE----VVSCSSMVHGYCKMGRIVDARSLFDR 233

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAA 364
           M     E +V++WT++I G       ++ F  F  M  +G     S T++ +  AC    
Sbjct: 234 M----TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
             R G +IHG    M +E DL + ++L+ MY+K G++ EA+ +F  M  +++V+WNS+I 
Sbjct: 290 RYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLIT 349

Query: 425 GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           G        EA ELF +M  +   D +S+T ++      G +     LF MM EK  I
Sbjct: 350 GLVQRKQISEAYELFEKMPGK---DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 280/508 (55%), Gaps = 40/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H  +I SG +      T ++  Y +C+ I+ A  +FD +P+ ++  W  +   
Sbjct: 46  LKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISG 105

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G+ + A+ +   M  +G + +   I S+L A      +  G  +H  VL+  F + 
Sbjct: 106 YAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESL 165

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L+DMYSKCGSV  A+ +FD M  + +V+ N+M+ GYVQ G A  A+ + +++  
Sbjct: 166 VNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLD 225

Query: 274 PRVKPNVVT-----------------------------------WNTLISGFSKSGDQVM 298
             V+P  VT                                    N+LIS +SK     +
Sbjct: 226 EGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDI 285

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            + +F+ +R K     +VSW ++I G   N C +EA + F EM S+   P S T+ S++P
Sbjct: 286 AADIFKNLRNK----TLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIP 341

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  +  R+ K IHG  I   ++ ++ V +ALVDMYAKCG I  AR LFD M+ R+ +T
Sbjct: 342 ALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVIT 401

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G   HG    ++ELF +M++   K + ++F   L+AC H GLVE G   F  M+
Sbjct: 402 WNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMK 461

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y I P  +HY  MVDLLGRAGRL +A++ I+ M  +P + V+GA+LGACK H N++L 
Sbjct: 462 KDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLG 521

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANA 565
           E AA  + +L P+    ++LL ++YA A
Sbjct: 522 EKAAFEIFKLNPDDGGYHVLLANIYATA 549



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 192/416 (46%), Gaps = 42/416 (10%)

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+      A++ F  M    ++  ++    +LK CG  SD+  G++IH  V+   F  
Sbjct: 4   GYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSW 63

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + F ++ +++MY+KC  +  A  +FD M E+D+V  N M+SGY Q G A  AL LV  + 
Sbjct: 64  NLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMS 123

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
               +P+ +T                                      L+  +SK G   
Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVS 183

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           +   +F  M  +     VVSW S+I G V +   + A   F++ML +G  PT+ T+   L
Sbjct: 184 IARVIFDGMDHR----TVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACA   ++ RGK +H     + ++ D+ V ++L+ MY+KC  +  A  +F  +  +  V
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WN+MI G A +G  +EA+  F +M+ R  K D  +  +V+ A   + +    + +  ++
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             ++ +         +VD+  + G +  A ++   M+    +  W A++     HG
Sbjct: 360 IRRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTHG 413



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 172/389 (44%), Gaps = 45/389 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L+ G  +H  ++ +G   L  ++T L+  Y++C ++  AR++FD +    +  W ++ 
Sbjct: 145 RLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMI 204

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y + G  + A+ +F +M  +G++     +   L AC  L D+  G+ +H LV +    
Sbjct: 205 DGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLD 264

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  V++SLI MYSKC  V+ A  +F  +  K +V+ NAM+ GY Q G   EALN   E+
Sbjct: 265 SDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEM 324

Query: 272 GTPRVKP-----------------------------------NVVTWNTLISGFSKSGDQ 296
            +  +KP                                   NV     L+  ++K G  
Sbjct: 325 QSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAI 384

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               KLF +M A+     V++W ++I G   +     + + FKEM      P   T    
Sbjct: 385 HTARKLFDMMNAR----HVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCA 440

Query: 357 LPACASAANMRRGK-EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           L AC+ +  +  G           G+E  +    A+VD+  + G +++A     KM  + 
Sbjct: 441 LSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKP 500

Query: 416 TVT-WNSMIFGCANHGYCD----EAIELF 439
            +T + +M+  C  H   D     A E+F
Sbjct: 501 GITVYGAMLGACKIHKNVDLGEKAAFEIF 529



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 5/208 (2%)

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           D A   F  M      P     + +L  C   ++++RGKEIHG  I  G   +L   + +
Sbjct: 12  DSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGV 71

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           V+MYAKC  I++A  +FD+M ER+ V WN+MI G A +G+   A+ L  +M EE  + D 
Sbjct: 72  VNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDS 131

Query: 451 LSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           ++  ++L A     L+ +G  +   +++  ++ +        +VD+  + G ++ A  + 
Sbjct: 132 ITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVS--TALVDMYSKCGSVSIARVIF 189

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELA 537
             M     +  W +++      G+ E A
Sbjct: 190 DGMDHRT-VVSWNSMIDGYVQSGDAEGA 216


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 176/505 (34%), Positives = 281/505 (55%), Gaps = 34/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G+ +H  +   G      +   LI+FY   + +  A+ LFDE+   ++  W ++   
Sbjct: 267 VEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISG 326

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFGT 212
           Y + G     + +F +M + G+  ++  + +V  AC ++  +  G+ +HS  +K  +   
Sbjct: 327 YVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDR 386

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +    ++L+DMYSKCG +  A +VF+ M EK +V+  +M++GYV+ GL+  A+ L +E+ 
Sbjct: 387 EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMK 446

Query: 273 TPRVKPNVVTWNTL-----ISGFSKSGDQV---------------------MVSKLFQLM 306
           +  V P+V    ++     I+G  KSG  V                     M +K   + 
Sbjct: 447 SRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMK 506

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            A  V     + DV+SW ++I G   N   +EA   F EM  +   P   T++ ILPACA
Sbjct: 507 DAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESK-PDGTTVACILPACA 565

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S A + +G+EIHG A+  G   D +V +A+VDMY KCG +  AR+LFD +  ++ V+W  
Sbjct: 566 SLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTV 625

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G   HGY  EAI  FNQM     + D +SF ++L AC H GL++ G ++FN+M+++ 
Sbjct: 626 MIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKEC 685

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           +I P  EHYACMVDLL R G L +A++ IK M  +PD  +WGALL  C+ H +++LAE  
Sbjct: 686 QIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKV 745

Query: 541 AKHLSELEPESAANNMLLTDLYANA 565
           A+ + ELEPE+    +LL ++YA A
Sbjct: 746 AERIFELEPENTGYYVLLANIYAEA 770



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 241/501 (48%), Gaps = 48/501 (9%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S++ +    AY   +++    ++++ G+ + + +  SG+     +  KL+  Y +C ++ 
Sbjct: 143 SQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLK 202

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
             RM+FD++ ++ I  W  +   Y+  G + E++ +F +M   G+K N +   S+LK   
Sbjct: 203 EGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFA 262

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            ++ +  G ++H L+ K  F +   VV+SLI  Y     V  A+K+FDE+ ++D+++ N+
Sbjct: 263 AVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNS 322

Query: 251 MVSGYVQRGLATEALNL----------------------VEEIGT--------------P 274
           M+SGYV+ GL    + +                         IGT               
Sbjct: 323 MISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAA 382

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            +   V   NTL+  +SK GD     ++F+ M     E  VVSWTS+I+G V    +D A
Sbjct: 383 TLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD----EKTVVSWTSMITGYVREGLSDGA 438

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
              F EM S+G  P    ++SIL ACA   N++ GK +H       +E +  V +AL DM
Sbjct: 439 IKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDM 498

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT 454
           YAKCG + +A  +F  M +++ ++WN+MI G   +   +EA+ LF +M+   K D  +  
Sbjct: 499 YAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVA 558

Query: 455 AVLTACCHVGLVELGQRLFNM-MQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKT 511
            +L AC  +  ++ G+ +    ++  Y      + Y    +VD+  + G L  A  +   
Sbjct: 559 CILPACASLAALDKGREIHGYALRNGYS----EDKYVTNAVVDMYVKCGLLVLARSLF-D 613

Query: 512 MSTEPDLFVWGALLGACKNHG 532
           M    DL  W  ++     HG
Sbjct: 614 MIPNKDLVSWTVMIAGYGMHG 634



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H   + +G +    +   ++  Y +C  +  AR LFD IP  ++  W  +  
Sbjct: 569 ALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIA 628

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFG 211
            Y   GY  EA+  F++M + G++ +     S+L AC H   +  G KI +++ K     
Sbjct: 629 GYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIE 688

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG 254
            +    + ++D+ ++ G++ KA K    M ++ D     A++ G
Sbjct: 689 PNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCG 732


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 181/476 (38%), Positives = 280/476 (58%), Gaps = 11/476 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L++GK   A  +  G+A    ++ + ++  Y +   I  AR LFD + + N+  W A+  
Sbjct: 188 LRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMID 247

Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            Y + G+ ++   +F  M  +G +K N   +  + KAC        G +IH LV +    
Sbjct: 248 GYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLE 307

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ +SL+ MYSK G + +AK VF  M  KD V+ N++++G VQR   +EA  L E++
Sbjct: 308 FDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKM 367

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  ++V+W  +I GFS  G+     +LF +M     E D ++WT++IS  V N   
Sbjct: 368 PGK----DMVSWTDMIKGFSGKGEISKCVELFGMMP----EKDNITWTAMISAFVSNGYY 419

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F +ML +  CP S T SS+L A AS A++  G +IHG  + M +  DL V+++L
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
           V MY KCG  ++A  +F  +SE N V++N+MI G + +G+  +A++LF+ +E   K+ + 
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F A+L+AC HVG V+LG + F  M+  Y I P  +HYACMVDLLGR+G L +A  +I 
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIS 599

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           TM  +P   VWG+LL A K H  ++LAE+AAK L ELEP+SA   ++L+ LY+  G
Sbjct: 600 TMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIG 655



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 178/358 (49%), Gaps = 21/358 (5%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           N+  A  +F ++   +I  WIA+  AYA  G   +A  VF EM ++       +I +++K
Sbjct: 65  NLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIK 124

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK--DI 245
              +  D+G   ++   + +     +A   +++I  + + G  ++A+ ++ E   K  D 
Sbjct: 125 ---NKCDLGKAYELFCDIPEK----NAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDS 177

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           VA N ++SGY++ G   EA+ + + +        VV+ ++++ G+ K G  V    LF  
Sbjct: 178 VASNVLLSGYLRAGKWNEAVRVFQGMAVKE----VVSCSSMVHGYCKMGRIVDARSLFDR 233

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAA 364
           M     E +V++WT++I G       ++ F  F  M  +G     S T++ +  AC    
Sbjct: 234 M----TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
             R G +IHG    M +E DL + ++L+ MY+K G++ EA+ +F  M  +++V+WNS+I 
Sbjct: 290 RYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLIT 349

Query: 425 GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           G        EA ELF +M  +   D +S+T ++      G +     LF MM EK  I
Sbjct: 350 GLVQRKQISEAYELFEKMPGK---DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 181/511 (35%), Positives = 273/511 (53%), Gaps = 49/511 (9%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           H     SG ++   I    +       N +   +    + KTN+  W ++    AR G  
Sbjct: 74  HTAFQFSGFSKRRSICAGAVLRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDS 133

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
            EA+  F  M    LK N    P  +K+C  L D+ +G + H   L   F  D FV S+L
Sbjct: 134 VEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSAL 193

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL-----NLVEEIGT-- 273
           +DMYSKCG +  A+ +FDE+  ++IV+  +M++GYVQ   A  AL      LVEE G+  
Sbjct: 194 VDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEG 253

Query: 274 ------------------PRVKPNVVTW------------------NTLISGFSKSGDQV 297
                              RV    +T                   NTL+  ++K G+  
Sbjct: 254 DGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELG 313

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA-TISSI 356
           +  ++F  M     E DV+SW S+I+    N  + E+ + F  M+  G    +A T+S++
Sbjct: 314 VSRRVFDGM----AERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 369

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA + + R GK IH   I MG+E ++ V ++++DMY KCG +  AR  FD+M E+N 
Sbjct: 370 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 429

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
            +W++M+ G   HG+  EA+E+F +M     K ++++F +VL AC H GL+E G   F  
Sbjct: 430 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 489

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M  ++ + P  EHY CMVDLLGRAG L EA+++IK M   PD  VWGALLGAC+ H N++
Sbjct: 490 MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVD 549

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L EI+A+ L EL+P++    +LL+++YA+AG
Sbjct: 550 LGEISARKLFELDPKNCGYYVLLSNIYADAG 580



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 50/386 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L SG+  H Q ++ G      +++ L+  Y++C  +  AR LFDEI   NI  W ++   
Sbjct: 168 LHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITG 227

Query: 154 YARRGYHQEAVTVFHEMHIQ--GLKQN--IFVIP----SVLKACGHLSDIGTGEKIHSLV 205
           Y +      A+ +F E  ++  G + +  + V P    SVL AC  +S+    E +H  +
Sbjct: 228 YVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFL 287

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K  F  D  V ++L+D Y+KCG +  +++VFD M E+D+++ N++++ Y Q G++TE++
Sbjct: 288 IKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESM 347

Query: 266 NLVEEI-----------------------GTPR-------------VKPNVVTWNTLISG 289
            +   +                       G+ R             ++ NV    ++I  
Sbjct: 348 EIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDM 407

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           + K G   M  K F  MR K V+    SW+++++G   +    EA + F EM   G  P 
Sbjct: 408 YCKCGKVEMARKAFDRMREKNVK----SWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPN 463

Query: 350 SATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
             T  S+L AC+ A  +  G       +    VE  +     +VD+  + G++ EA  L 
Sbjct: 464 YITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLI 523

Query: 409 DKMSER-NTVTWNSMIFGCANHGYCD 433
             M  R + V W +++  C  H   D
Sbjct: 524 KGMKLRPDFVVWGALLGACRMHKNVD 549



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 143/284 (50%), Gaps = 7/284 (2%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           + ++++  G  +H  LI  G      +   L+  Y +C  +  +R +FD + + ++  W 
Sbjct: 274 VSEKSITEG--VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWN 331

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           ++   YA+ G   E++ +FH M   G +  N   + +VL AC H      G+ IH  V+K
Sbjct: 332 SIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIK 391

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
               ++ FV +S+IDMY KCG VE A+K FD M EK++ + +AMV+GY   G A EAL +
Sbjct: 392 MGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEV 451

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLV 326
             E+    VKPN +T+ ++++  S +G        F+ M  +  VEP V  +  ++  L 
Sbjct: 452 FYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLG 511

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
                 EAFD  K M  +   P      ++L AC    N+  G+
Sbjct: 512 RAGYLKEAFDLIKGMKLR---PDFVVWGALLGACRMHKNVDLGE 552


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 172/475 (36%), Positives = 274/475 (57%), Gaps = 1/475 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK  HA  I++ L     + + +I FY++   I  A ++F  + + ++  W  L  
Sbjct: 298 ALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLIS 357

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           +Y +     +A+ + H M  + L+ +   + S+L A    S+I  G++ H   ++ +  +
Sbjct: 358 SYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLES 417

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V +S+IDMY+KC  ++ A+KVFD   E+D+V  N +++ Y Q GL+ EAL L  ++ 
Sbjct: 418 DVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQ 477

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV++WN++I GF ++G       +F  M++ G +P++++WT++ISGL  +    
Sbjct: 478 FDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGY 537

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F++M   G  P+ A+I+S+L AC    ++  G+ IHG          + V ++LV
Sbjct: 538 EAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLV 597

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
           DMYAKCG I EA+ +F  MS +    +N+MI   A HG   EA+ LF  ++ E  + D +
Sbjct: 598 DMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSI 657

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +FT++L+AC H GLV  G  LF  M  K+ + P  EHY C+V LL R G L EA  +I T
Sbjct: 658 TFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILT 717

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  +PD  + G+LL AC+ H  IEL E  +KHL +LEP ++ N + L++ YA AG
Sbjct: 718 MPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAG 772



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/494 (32%), Positives = 262/494 (53%), Gaps = 38/494 (7%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNIHH 131
           F + P  Y E ++  + +RAL +G+ +HA+++ +G   A+   + TKL+ FY +C     
Sbjct: 75  FQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEV 134

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  LF  +   N+  W A+ G   R G+ ++A+  F EM   G+  + FV+P+VLKACG 
Sbjct: 135 AVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGS 194

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L  IG G+ +H  VLK  FG   FV SSL+DMY KCG +E A+KVFD MVEK++V  N+M
Sbjct: 195 LQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSM 254

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--------KSG--------- 294
           + GYVQ GL  EA+++  ++    ++P  VT  + +S  +        K G         
Sbjct: 255 IVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSL 314

Query: 295 --DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
             D ++ S +             +L+ ++ +E DVV+W  +IS  V +    +A +    
Sbjct: 315 DLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHL 374

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M S+     S T+SSIL A A  +N++ GKE H   I   +E D+ V ++++DMYAKC  
Sbjct: 375 MRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCER 434

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
           I +AR +FD  +ER+ V WN+++   A  G   EA++LF QM+ +    + +S+ +V+  
Sbjct: 435 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILG 494

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEP 516
               G V   + +F+ MQ      P    +  ++  L ++G   EA   ++ ++     P
Sbjct: 495 FLRNGQVNEAKDMFSQMQ-SLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRP 553

Query: 517 DLFVWGALLGACKN 530
            +    ++L AC +
Sbjct: 554 SIASITSVLLACTD 567



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 208/444 (46%), Gaps = 55/444 (12%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G+ QE+V +  EM  +  +    +   +L+ C +   + TG++IH+ +LK+   F  +
Sbjct: 56  KDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKN 115

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V + L+  Y+KC   E A ++F  +  +++ +  A+V    + G + +AL    E+  
Sbjct: 116 EYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQE 175

Query: 274 PRVKPN-----------------------------------VVTWNTLISGFSKSGDQVM 298
             V P+                                   V   ++L+  + K G    
Sbjct: 176 NGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLED 235

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             K+F  M    VE +VV+W S+I G V N  N EA D F +M  +G  PT  T++S L 
Sbjct: 236 ARKVFDSM----VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLS 291

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+   +  GK+ H  AI+  ++ D  + S++++ Y+K G I +A  +F +M E++ VT
Sbjct: 292 ASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVT 351

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN +I     H    +A+ + + M  E  + D ++ +++L+A      ++LG+       
Sbjct: 352 WNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKE-----G 406

Query: 478 EKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             Y I    E        ++D+  +  R+ +A ++  + +TE DL +W  LL A   +  
Sbjct: 407 HCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDS-TTERDLVLWNTLLAA---YAQ 462

Query: 534 IELAEIAAKHLSELEPESAANNML 557
           + L+  A K   +++ +S   N++
Sbjct: 463 VGLSGEALKLFYQMQFDSVPPNVI 486


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 181/476 (38%), Positives = 280/476 (58%), Gaps = 11/476 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L++GK   A  +  G+A    ++ + ++  Y +   I  AR LFD + + N+  W A+  
Sbjct: 188 LRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMID 247

Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            Y + G+ ++   +F  M  +G +K N   +  + KAC        G +IH LV +    
Sbjct: 248 GYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLE 307

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ +SL+ MYSK G + +AK VF  M  KD V+ N++++G VQR   +EA  L E++
Sbjct: 308 FDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKM 367

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  ++V+W  +I GFS  G+     +LF +M     E D ++WT++IS  V N   
Sbjct: 368 PGK----DMVSWTDMIKGFSGKGEISKCVELFGMMP----EKDNITWTAMISAFVSNGYY 419

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F +ML +  CP S T SS+L A AS A++  G +IHG  + M +  DL V+++L
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
           V MY KCG  ++A  +F  +SE N V++N+MI G + +G+  +A++LF+ +E   K+ + 
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F A+L+AC HVG V+LG + F  M+  Y I P  +HYACMVDLLGR+G L +A  +I 
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIS 599

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           TM  +P   VWG+LL A K H  ++LAE+AAK L ELEP+SA   ++L+ LY+  G
Sbjct: 600 TMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIG 655



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 178/358 (49%), Gaps = 21/358 (5%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           N+  A  +F ++   +I  WIA+  AYA  G   +A  VF EM ++       +I +++K
Sbjct: 65  NLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIK 124

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK--DI 245
              +  D+G   ++   + +     +A   +++I  + + G  ++A+ ++ E   K  D 
Sbjct: 125 ---NKCDLGKAYELFCDIPEK----NAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDS 177

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           VA N ++SGY++ G   EA+ + + +        VV+ ++++ G+ K G  V    LF  
Sbjct: 178 VASNVLLSGYLRAGKWNEAVRVFQGMAVKE----VVSCSSMVHGYCKMGRIVDARSLFDR 233

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAA 364
           M     E +V++WT++I G       ++ F  F  M  +G     S T++ +  AC    
Sbjct: 234 M----TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
             R G +IHG    M +E DL + ++L+ MY+K G++ EA+ +F  M  +++V+WNS+I 
Sbjct: 290 RYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLIT 349

Query: 425 GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           G        EA ELF +M  +   D +S+T ++      G +     LF MM EK  I
Sbjct: 350 GLVQRKQISEAYELFEKMPGK---DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNI 404


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 176/468 (37%), Positives = 263/468 (56%), Gaps = 45/468 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HAQ+IVSG      I T LI  Y+       AR +FD  P  +   W ++  AY R   
Sbjct: 71  IHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 129

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           + EA+ +++ M                                  V K     D F+ + 
Sbjct: 130 YNEALEMYYCM----------------------------------VEKGGLERDVFIGAG 155

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+DMYSK G +++A++VFD+M ++D+VA NAM++G  Q    +E   +   +    V  +
Sbjct: 156 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ----SEDPYVARRVFDQMVDQD 211

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
            V+W T+++G++ +G  V V +LF  M+   V     +W  +I+  + N    EA  +F 
Sbjct: 212 DVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV-----TWNVIIAAYMQNGHAKEAISSFH 266

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           +M  + F P S T  S+LPA A  A  R G   H C I MG   +  V ++L+DMYAKCG
Sbjct: 267 QMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG 326

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLT 458
            +  +  LF++M  ++TV+WN+M+ G A HG+ D AI LF+ M+E + ++D +SF +VL+
Sbjct: 327 QLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 386

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           AC H GLVE G+++F+ M +KY I P  EHYACMVDLLGRAG   E    IK M  EPD 
Sbjct: 387 ACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 446

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            VWGALLG+C+ H N++L E+A  HL +LEP + A+ ++L+ +YA +G
Sbjct: 447 GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 494



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 141/280 (50%), Gaps = 6/280 (2%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           LFD++   N+  W  +  AY + G+ +EA++ FH+M ++    N     SVL A  +L+ 
Sbjct: 234 LFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 292

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
              G   H+ +++  F ++  V +SLIDMY+KCG ++ ++K+F+EM  KD V+ NAM+SG
Sbjct: 293 FREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSG 352

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEP 313
           Y   G    A+ L   +   +V+ + V++ +++S    +G      K+F  M  K  ++P
Sbjct: 353 YAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKP 412

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D+  +  ++  L      DE     K M  +   P +    ++L +C   +N++ G+   
Sbjct: 413 DLEHYACMVDLLGRAGLFDETLGFIKVMPVE---PDAGVWGALLGSCRMHSNVKLGEVAL 469

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
              + +      H    L  +YA+ G  ++A     KM++
Sbjct: 470 DHLVKLEPRNPAHF-VVLSSIYAQSGRWADAGKARSKMND 508



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + G   HA +I  G    T +   LI  Y +C  + ++  LF+E+   +   W A+  
Sbjct: 292 AFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLS 351

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
            YA  G+   A+ +F  M    ++ +     SVL AC H   +  G KI HS+  K+   
Sbjct: 352 GYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 411

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
            D    + ++D+  + G       +FDE
Sbjct: 412 PDLEHYACMVDLLGRAG-------LFDE 432



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 20/180 (11%)

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYA---KCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +IH   IV G +   H  + L+++Y+   KC     AR++FD     + + WNSMI    
Sbjct: 70  QIHAQIIVSGFKHH-HSITHLINLYSLFHKCDL---ARSVFDSTPNPSRILWNSMIRAYT 125

Query: 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM--MQEKYKIMPR 485
                +EA+E++  M E+  L+   F          GLV++  ++ ++   +E +  MP+
Sbjct: 126 RSKQYNEALEMYYCMVEKGGLERDVFIG-------AGLVDMYSKMGDLKRAREVFDKMPK 178

Query: 486 TE--HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN-IELAEIAAK 542
            +   +  M+  L ++     A  +   M  + D+  WG ++    ++G  +E+ E+  K
Sbjct: 179 RDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDV-SWGTMMAGYAHNGCFVEVLELFDK 237


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 278/512 (54%), Gaps = 40/512 (7%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D  L SG  LH+  +  GL     +A  L+  Y +CQ +  A  LF+ +P+ ++  W  +
Sbjct: 255 DADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGM 314

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
                + G   EA  +F++M   G + +   + S+L A   L+ +  G+++H  ++++  
Sbjct: 315 ISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCV 374

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D F+VS+L+D+Y KC  V  A+ ++D     D+V  + M+SGYV  G++ EAL +   
Sbjct: 375 NMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRY 434

Query: 271 IGTPRVKPNVVTWNTLISG-----------------------------------FSKSGD 295
           +    +KPN VT  +++ G                                   ++K G 
Sbjct: 435 LLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGR 494

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             +   +F  M  K    D V+W S+IS    N    EA D F++M  +G    + TIS+
Sbjct: 495 LDLSHYIFLKMSQK----DEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISA 550

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
            L ACAS   +  GKEIHG  I   ++ D+   SAL+DMYAKCG +  A  +F+ M ++N
Sbjct: 551 ALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKN 610

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+WNS+I     HG   E++ L + M EE  K DH++F A+++AC H GLVE G +LF 
Sbjct: 611 EVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQ 670

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M +KY I PR EH+ACMVDL  R+G+L +A + I  M  +PD  +WGALL AC+ H N+
Sbjct: 671 CMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNV 730

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ELA+IA++ L +L+P ++   +L++++ A AG
Sbjct: 731 ELADIASQELFKLDPANSGYYVLMSNINAVAG 762



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 235/479 (49%), Gaps = 42/479 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+++H      GLA    + + L+  Y +   + +AR  FD IP+ +   W  +  
Sbjct: 156 AMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMD 215

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              + G    AV +F  M   G + N   +   L  C   +D+ +G ++HSL +K     
Sbjct: 216 GCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEP 275

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++L+ MY+KC  ++ A ++F+ M + D+V  N M+SG VQ GL  EA  L  ++ 
Sbjct: 276 EVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQ 335

Query: 273 TPRVKPNVVTWNTLISGFS-----KSGDQV------------------------------ 297
               +P+ +T  +L+   +     K G +V                              
Sbjct: 336 RSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVR 395

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           M   L+   RA     DVV  +++ISG V N  ++EA   F+ +L Q   P + TI+S+L
Sbjct: 396 MAQNLYDAARAI----DVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVL 451

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P CAS A +  G++IHG  +    E   +V SAL+DMYAKCG +  +  +F KMS+++ V
Sbjct: 452 PGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEV 511

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TWNSMI   + +G   EA++LF QM  E  K ++++ +A L+AC  +  +  G+ +  + 
Sbjct: 512 TWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVT 571

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             K  I       + ++D+  + G L  A  + + M  + ++  W +++ A   HG ++
Sbjct: 572 I-KGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEV-SWNSIISAYGAHGLVK 628



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 220/485 (45%), Gaps = 44/485 (9%)

Query: 94  LQSGKILHAQLIVSG-LARLTQIA--TKLITFYTECQNIHHARMLFDEIPKTNIHR---W 147
           L  G  +HA+ +VSG L+    +A  T+L+  Y   +    A  +F  +P+        W
Sbjct: 48  LPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPW 107

Query: 148 IALTGAYARRGYHQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
             L   +   G H  AV  + +M  H      +   +P V+K+C  L  +  G  +H   
Sbjct: 108 NWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTA 167

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
                  D +V S+L+ MY+  G +  A+  FD + E+D V  N M+ G ++ G    A+
Sbjct: 168 RAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAV 227

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP------------ 313
            L   +     +PN  T    +S  +   D +  ++L  L    G+EP            
Sbjct: 228 RLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMY 287

Query: 314 -------------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                              D+V+W  +ISG V N    EAF  F +M   G  P S T+ 
Sbjct: 288 AKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLV 347

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+LPA      +++GKE+HG  +   V  D+ + SALVD+Y KC  +  A+ L+D     
Sbjct: 348 SLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAI 407

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V  ++MI G   +G  +EA+++F   +E+  K + ++  +VL  C  +  + LGQ++ 
Sbjct: 408 DVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIH 467

Query: 474 N-MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             +++  Y+     E  + ++D+  + GRL  ++ +   MS + D   W +++ +   +G
Sbjct: 468 GYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIFLKMS-QKDEVTWNSMISSFSQNG 524

Query: 533 NIELA 537
             + A
Sbjct: 525 KPQEA 529



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 15/192 (7%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGD-----LHVRSALVDMYAKCGFISEARTLFD 409
           ++L  C SA ++  G +IH  A+V G   D     LH R  L+ MY       +A  +F 
Sbjct: 37  AVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTR--LLGMYVLARRFRDAVAVFS 94

Query: 410 KM---SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHV 463
            +   +  +++ WN +I G    G    A+  + +M         D  +   V+ +C  +
Sbjct: 95  ALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL 154

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
           G + LG RL +       +       + +V +   AG L  A +    +  E D  +W  
Sbjct: 155 GAMSLG-RLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGI-PERDCVLWNV 212

Query: 524 LLGACKNHGNIE 535
           ++  C   G+++
Sbjct: 213 MMDGCIKAGDVD 224


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 176/509 (34%), Positives = 277/509 (54%), Gaps = 40/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK LH+ L+ +G++    +   L+  Y +  +I  A  +FD   +TN+  W  +  A
Sbjct: 260 LRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVA 319

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +     ++  +F+ M   G++ N F  P +L+ C H  +IG GE+IHSL +K+ F +D
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSD 379

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V   LIDMYSK G ++KA+++ D + EKD+V+  +M++GYVQ     EAL   +E+  
Sbjct: 380 MYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQA 439

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
             + P                                   +V  WN L+  +++ G    
Sbjct: 440 CGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKE 499

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
               F+ +  K    + ++W  +ISG   +   +EA   F +M   G      T  S + 
Sbjct: 500 AFSSFEAIEHK----EGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSIS 555

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ A++++GK+IH   I  G   +  + +AL+ +Y KCG I +A+  F +M++RN V+
Sbjct: 556 ASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVS 615

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I  C+ HG   EA++LF+QM+++  K   ++F  VLTAC HVGLVE G   F  M 
Sbjct: 616 WNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMS 675

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            ++ I PR +HYAC+VD+LGRAG+L  A   ++ M    D  VW  LL ACK H N+E+ 
Sbjct: 676 NEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIG 735

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E AAKHL ELEP  +A+ +LL++ YA  G
Sbjct: 736 EFAAKHLLELEPHDSASYVLLSNAYAVTG 764



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 238/493 (48%), Gaps = 44/493 (8%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P   S  +    +    Q G+++H Q+   G    T +   LI+ Y  C++   A  +F
Sbjct: 142 TPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVF 201

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
            ++   +   +  L   +A+ G+   A+ +F EM + GL  +   I S+L AC  + D+ 
Sbjct: 202 CDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLR 261

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G+++HS +LK     D  +  SL+D+Y K G +E+A ++FD     ++V  N M+  Y 
Sbjct: 262 KGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYG 321

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLI-----SGFSKSGDQV-------------- 297
           Q     ++ ++   +    V+PN  T+  ++     +G    G+Q+              
Sbjct: 322 QIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMY 381

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLV-HNFCNDEAFDTFKEMLSQ 344
                  M SK   L +A+ +     E DVVSWTS+I+G V H FC  EA +TFKEM + 
Sbjct: 382 VSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCK-EALETFKEMQAC 440

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           G  P +  ++S + ACA    + +G +IH    V G   D+ + + LV +YA+CG   EA
Sbjct: 441 GIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEA 500

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV 463
            + F+ +  +  +TWN +I G A  G  +EA+++F +M++   K +  +F + ++A  ++
Sbjct: 501 FSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANL 560

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA----YEMIKTMSTEPDLF 519
             ++ G+++   +  K      TE    ++ L G+ G + +A    +EM K         
Sbjct: 561 ADIKQGKQIHARVI-KTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVS---- 615

Query: 520 VWGALLGACKNHG 532
            W  ++  C  HG
Sbjct: 616 -WNTIITCCSQHG 627



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 222/490 (45%), Gaps = 37/490 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+ I+ GL+    I   LI  Y +   +  AR +F+E+   +   W+A+   YA+ G 
Sbjct: 64  IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGL 123

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EAV ++ EMH  G+    +V+ S+L AC        G  IH  V K  F ++ FV ++
Sbjct: 124 GEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNA 183

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LI +Y +C S   A +VF +M+  D V  N ++SG+ Q G    AL + +E+    + P+
Sbjct: 184 LISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPD 243

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA----- 334
            VT  +L++  S  GD     +L   +   G+  D +   S++   V +   +EA     
Sbjct: 244 SVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFD 303

Query: 335 --------------------------FDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
                                     FD F  ML+ G  P   T   +L  C     +  
Sbjct: 304 SGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGL 363

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           G++IH   I  G + D++V   L+DMY+K G++ +A+ + D + E++ V+W SMI G   
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQ 423

Query: 429 HGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           H +C EA+E F +M+      D++   + ++AC  +  V  G ++   +           
Sbjct: 424 HEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS-GYSADVS 482

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
            +  +V L  R G   EA+   + +  +  +  W  L+      G   L E A K   ++
Sbjct: 483 IWNGLVYLYARCGISKEAFSSFEAIEHKEGI-TWNGLISGFAQSG---LYEEALKVFMKM 538

Query: 548 EPESAANNML 557
           +   A  N+ 
Sbjct: 539 DQAGAKYNVF 548



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 183/402 (45%), Gaps = 58/402 (14%)

Query: 177 QNIFVIPSVLKACGHLSDIGTGEK------IHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
           +   V+ +V  AC   +  G+G +      IH+  +         + + LID+Y+K G V
Sbjct: 34  RQYMVLGAVDFACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFV 93

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
            +A++VF+E+  +D V+  A++SGY Q GL  EA+ L  E+    V P     ++++S  
Sbjct: 94  RRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSAC 153

Query: 291 SKSGDQVMVSKLFQLMRAKGVEP------------------------------------- 313
           +K       ++LFQL R   V+                                      
Sbjct: 154 TK-------TELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLY 206

Query: 314 -DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            D V++ ++ISG       D A   F EM   G  P S TI+S+L AC++  ++R+GK++
Sbjct: 207 CDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQL 266

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H   +  G+  D  +  +L+D+Y K G I EA  +FD     N V WN M+         
Sbjct: 267 HSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDL 326

Query: 433 DEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY-- 489
            ++ ++F +M     + +  ++  +L  C H G + LG+++ ++     K   +++ Y  
Sbjct: 327 AKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSL---TIKNGFQSDMYVS 383

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
             ++D+  + G L +A + I  M  E D+  W +++     H
Sbjct: 384 GVLIDMYSKYGWLDKA-QRILDMIEEKDVVSWTSMIAGYVQH 424



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 111/203 (54%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A+  G  +HA++ VSG +    I   L+  Y  C     A   F+ I       W  L 
Sbjct: 460 KAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLI 519

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +A+ G ++EA+ VF +M   G K N+F   S + A  +L+DI  G++IH+ V+K  + 
Sbjct: 520 SGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYT 579

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  + ++LI +Y KCGS+E AK  F EM +++ V+ N +++   Q G   EAL+L +++
Sbjct: 580 SETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQM 639

Query: 272 GTPRVKPNVVTWNTLISGFSKSG 294
               +KP+ VT+  +++  S  G
Sbjct: 640 KQQGLKPSDVTFVGVLTACSHVG 662



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 15/224 (6%)

Query: 347 CPTSATISSILPACASAANMRRGK------EIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           C     + ++  ACA  A    G+      EIH  AI+ G+ G   + + L+D+YAK GF
Sbjct: 33  CRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGF 92

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTA 459
           +  AR +F+++S R+ V+W +++ G A +G  +EA+ L+ +M     +      +++L+A
Sbjct: 93  VRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSA 152

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL--GRAGRLAEAY--EMIKTMSTE 515
           C    L +LG RL ++   K      T     ++ L    R+ RLA+    +M+   S  
Sbjct: 153 CTKTELFQLG-RLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVT 211

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
            +  + G    A   HG+  L       LS L P+S     LL 
Sbjct: 212 FNTLISGH---AQCGHGDRALGIFDEMQLSGLSPDSVTIASLLA 252


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 281/524 (53%), Gaps = 45/524 (8%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           A +  I+ Y + + L+ GK LHA LI +G    T +   L+  Y++C  + HA  LFD +
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P+ N+  W A+    ++     EA+  F  M I G     F   S ++AC  L  I  G+
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H L LK   G++ FV S+L DMYSKCG++  A KVF+EM  KD V+  AM+ GY + G
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 186

Query: 260 LATEAL----NLVEE---------------------------IGTPRVK----PNVVTWN 284
              EAL     +++E                           + +  VK     ++   N
Sbjct: 187 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGN 246

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCNDEAFDTFKEM 341
            L   +SK+GD    S +F      G++ +   VVS+T +I G V     ++    F E+
Sbjct: 247 ALTDMYSKAGDMESASNVF------GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             QG  P   T SS++ ACA+ A + +G ++H   + +  + D  V S LVDMY KCG +
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
             A   FD++ +   + WNS++     HG   +AI+ F +M +R  K + ++F ++LT C
Sbjct: 361 EHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGC 420

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            H GLVE G   F  M + Y ++P  EHY+C++DLLGRAGRL EA E I  M  EP+ F 
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 480

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           W + LGAC+ HG+ E+ ++AA+ L +LEP+++   +LL+++YAN
Sbjct: 481 WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 524


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 279/507 (55%), Gaps = 40/507 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H QLI +  A      T ++  Y +C+ I  A  +FD +P+ ++  W  +   
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +++ G+ ++A+ +   M  +G + +   + +VL A   +  +  G+ IH   ++  F   
Sbjct: 223 FSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + ++L DMYSKCGSVE A+ +FD M +K +V+ N+M+ GYVQ G   +A+ + E++  
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 274 PRVKPNVVT-----------------------------------WNTLISGFSKSGDQVM 298
             + P  VT                                    N+LIS +SK     +
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            S +F  +  +      VSW ++I G   N    EA + F EM S G  P S T+ S++P
Sbjct: 403 ASDIFNNLNGR----THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIP 458

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  +  R  K IHG  I   ++ ++ V +ALVDMY+KCG I  AR LFD +S+R+ +T
Sbjct: 459 ALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT 518

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G   HG    A++LF++M++   + + +++ +V++AC H GLV+ G R F  M+
Sbjct: 519 WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMK 578

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y + P  +HY  MVDLLGRAGR+ EA++ I+ M   P + V+GA+LGACK H NIE+ 
Sbjct: 579 QDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVG 638

Query: 538 EIAAKHLSELEPESAANNMLLTDLYAN 564
           E AAK L EL P+    ++LL ++YA+
Sbjct: 639 EKAAKKLFELNPDEGGYHVLLANIYAS 665



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 162/328 (49%), Gaps = 10/328 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H  +    L     +   LI+ Y++C+ +  A  +F+ +       W A+   
Sbjct: 365 LERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILG 424

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G   EA+  F EM   G+K + F + SV+ A   LS     + IH L+++     +
Sbjct: 425 YAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKN 484

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMYSKCG++  A+K+FD + ++ ++  NAM+ GY   GL   AL+L +++  
Sbjct: 485 IFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK 544

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCND 332
             V+PN +T+ ++IS  S SG      + F+ M+   G+EP +  + +++  L       
Sbjct: 545 GAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIK 604

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSAL 391
           EA+D  + M      P      ++L AC    N+  G++       +   EG  HV   L
Sbjct: 605 EAWDFIENM---PISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHV--LL 659

Query: 392 VDMYA---KCGFISEARTLFDKMSERNT 416
            ++YA   K   ++E R   +K   + T
Sbjct: 660 ANIYASTSKWSKVAEVRKTMEKKGLKKT 687



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 153/318 (48%), Gaps = 35/318 (11%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +L+ C  + ++    +I  LV+K+    +    + L+ ++SK GS+ +A +VF+ + +K 
Sbjct: 55  LLELCTSMKEL---HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI----------------- 287
               + M+ GY +      AL  +  +    VKP V  +  L+                 
Sbjct: 112 DALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHG 171

Query: 288 ---------SGFSKSGDQVMVSKLFQL-----MRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                    + F+ +G   M +K  Q+     M  +  E D+VSW ++I+G   N    +
Sbjct: 172 QLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKK 231

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A +    M  +G  P S T+ ++LPA A    +  GK IHG AI  G    +++ +AL D
Sbjct: 232 ALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALAD 291

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           MY+KCG +  AR +FD M ++  V+WNSM+ G   +G  ++AI +F +M EE      ++
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 453 FTAVLTACCHVGLVELGQ 470
               L AC  +G +E G+
Sbjct: 352 IMEALHACADLGDLERGK 369



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 101/188 (53%), Gaps = 5/188 (2%)

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           L+S FSK G     +++F+ +  K    D + + +++ G   N   + A      M    
Sbjct: 87  LVSLFSKYGSINEAARVFEPIDDK---LDAL-YHTMLKGYAKNSSLETALAFLCRMRYDD 142

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P     + +L  C   A+++RGKEIHG  I      ++   + +V+MYAKC  I +A 
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAY 202

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVG 464
            +FD+M ER+ V+WN++I G + +G+  +A+EL  +M+ E ++ D ++   VL A   VG
Sbjct: 203 KMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 465 LVELGQRL 472
           L+ +G+ +
Sbjct: 263 LLMVGKSI 270


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/518 (33%), Positives = 282/518 (54%), Gaps = 40/518 (7%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           + I   +  ++ G+ LH  ++ SGL  +  +   L+T Y++ + +  AR LFD +P+ ++
Sbjct: 118 LSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDL 177

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W  + G Y + G+  +A  +F+EM   G+K +     S L +    S +   ++IH  
Sbjct: 178 VVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGY 237

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           +++H    D ++ S+LID+Y KC     A K+F+   + DIV   AM+SGYV  G+  +A
Sbjct: 238 IVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDA 297

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISG----------------------------------- 289
           L +   +   ++ PN +T+++++                                     
Sbjct: 298 LEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNM 357

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           ++K G   +   +F  +  K    D + W S+I+    +   +EA   F++M  +G    
Sbjct: 358 YAKCGRLDLAHLIFGRISIK----DAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYD 413

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
             T+S+ L ACA+   +  GKEIHG  I    E DL   SAL++MYAKCG ++ AR +F+
Sbjct: 414 CVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFN 473

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVEL 468
            M E+N V WNS+I     HGY  +++ LF N +EE  + DH++F  +L++C H G VE 
Sbjct: 474 LMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVED 533

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G R F  M E+Y I  + EHYACM DL GRAG L EA+E+I +M   P   VWG LLGAC
Sbjct: 534 GVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGAC 593

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + HGN+ELAE+A+++L +LEP+++   +LLT + A+AG
Sbjct: 594 RVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAG 631



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/546 (26%), Positives = 245/546 (44%), Gaps = 85/546 (15%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK++   ++  G      +A+ LI  Y +   I  AR  FD++   +   W  +   Y +
Sbjct: 29  GKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQ 88

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G    A+ +F +M     K +      VL      + +  G ++H LV++        V
Sbjct: 89  CGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLV 148

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+ +YSK   +  A+K+FD M + D+V  N M+ GYVQ G   +A  L  E+ +  +
Sbjct: 149 GNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGI 208

Query: 277 KPNVVTWNT-----------------------------------LISGFSKSGDQVMVSK 301
           KP+ +T+ +                                   LI  + K  D VM  K
Sbjct: 209 KPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACK 268

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F L      + D+V +T++ISG V N  N +A + F+ +L +   P + T SSILPACA
Sbjct: 269 MFNL----STKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACA 324

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
             A ++ G+E+HG  I   +E    V SA+++MYAKCG +  A  +F ++S ++ + WNS
Sbjct: 325 GLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNS 384

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHV----------------- 463
           +I   +  G  +EAI LF QM  E  K D ++ +A L+AC ++                 
Sbjct: 385 IITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGA 444

Query: 464 ------------------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
                             G + + + +FN+MQEK ++      +  ++   G  G LA++
Sbjct: 445 FESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVA-----WNSIIAAYGYHGYLADS 499

Query: 506 YEMIKTMSTE---PDLFVWGALLGACKNHGNIELAEIAAKHLSELE--PESAANNMLLTD 560
             +   M  E   PD   +  +L +C + G +E      + ++E    P    +   + D
Sbjct: 500 LALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMAD 559

Query: 561 LYANAG 566
           L+  AG
Sbjct: 560 LFGRAG 565



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 209/400 (52%), Gaps = 42/400 (10%)

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G+  + +  P V+K C  L+++  G+ I  ++L+  F  D FV SSLI +Y+  G +E A
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW---------- 283
           ++ FD+M++KD V  N M++GYVQ G +  A+ L +++ +   KP+ VT+          
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124

Query: 284 -------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                    NTL++ +SK        KLF +M     + D+V W
Sbjct: 125 AMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMP----QIDLVVW 180

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
             +I G V N   D+A   F EM+S G  P S T +S LP+ A ++++++ KEIHG  + 
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVR 240

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
            GV  D+++ SAL+D+Y KC     A  +F+  ++ + V + +MI G   +G   +A+E+
Sbjct: 241 HGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEI 300

Query: 439 FNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F  + ++K + + L+F+++L AC  +  ++LG+ L   +  K ++  +    + ++++  
Sbjct: 301 FRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYII-KNELEEKCPVGSAIMNMYA 359

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + GRL  A+ +   +S + D   W +++ +    G  E A
Sbjct: 360 KCGRLDLAHLIFGRISIK-DAICWNSIITSFSQDGKPEEA 398



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           ML  G  P   T   ++  C    N+R GK I    + MG + D+ V S+L+ +YA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTA 459
           I +AR  FDKM +++ V WN MI G    G  D AI+LF + M    K D ++F  VL+ 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 460 CCHVGLVELGQRLFNM-MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
            C   +VE G++L  + ++     +P   +   +V +  +  +L +A ++   M  + DL
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGN--TLVTVYSKGRQLGDARKLFDMMP-QIDL 177

Query: 519 FVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDL 561
            VW  ++G    +G ++ A +    +  + ++P+S      L  L
Sbjct: 178 VVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSL 222


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 181/526 (34%), Positives = 281/526 (53%), Gaps = 43/526 (8%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           AYS  I+  I   +L+ GK++HAQ+++ G A    ++T L+  Y +  +I  +  +F+ +
Sbjct: 169 AYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMM 228

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
            + N   W A+       G H EA  +F  M       N++ + SV KA G L D+  G+
Sbjct: 229 TEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGK 288

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD-EMVEKDI-VAMNAMVSGYVQ 257
           ++ +   +     +  V ++LIDMYSKCGS+  A+ VFD   +   +    NAM+SGY Q
Sbjct: 289 EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQ 348

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTW---------------------------------- 283
            G + EAL L  ++    +  ++ T+                                  
Sbjct: 349 SGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVS 408

Query: 284 --NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
             N +   +SK G    V K+F  M     E D+VSWT++++    +   +EA  TF  M
Sbjct: 409 VNNAIADAYSKCGFLEDVRKVFDRME----ERDIVSWTTLVTAYSQSSLGEEALATFCLM 464

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             +GF P   T SS+L +CAS   +  G+++HG     G++ +  + SAL+DMYAKCG I
Sbjct: 465 REEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSI 524

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
           +EA  +FDK+S  + V+W ++I G A HG  ++A++LF +ME    K + ++   VL AC
Sbjct: 525 TEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFAC 584

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            H G+VE G   F  M++ Y ++P  EHYAC++DLLGR GRL +A E I+ M  EP+  V
Sbjct: 585 SHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMV 644

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           W  LLG C+ HGN+EL EIAA+ +  + PE +A  +LL++ Y   G
Sbjct: 645 WQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETG 690



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 216/452 (47%), Gaps = 41/452 (9%)

Query: 123 YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
           Y++C     A  +FDE+P+ N+  W  +       G   +    F EM   G+  + F  
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 170

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            +++++C  L  +  G+ +H+ ++   F T  FV +SL++MY+K GS+E +  VF+ M E
Sbjct: 171 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 230

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
            + V+ NAM+SG    GL  EA +L   +      PN+ T  ++     K  D  M  ++
Sbjct: 231 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 290

Query: 303 FQLMRAKGVEPDVV---------------------------------SWTSVISGLVHNF 329
                  G+E +V+                                  W ++ISG   + 
Sbjct: 291 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 350

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVR 388
           C+ EA + + +M   G      T  S+  A A++ +++ G+ +HG  +  G++   + V 
Sbjct: 351 CSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVN 410

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           +A+ D Y+KCGF+ + R +FD+M ER+ V+W +++   +     +EA+  F  M EE   
Sbjct: 411 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 470

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH--YACMVDLLGRAGRLAEA 505
            +  +F++VL +C  +  +E G+++  ++    K    TE    + ++D+  + G + EA
Sbjct: 471 PNQFTFSSVLISCASLCFLEYGRQVHGLL---CKAGLDTEKCIESALIDMYAKCGSITEA 527

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            ++   +S  PD+  W A++     HG +E A
Sbjct: 528 GKVFDKISN-PDIVSWTAIISGYAQHGLVEDA 558



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 172/383 (44%), Gaps = 45/383 (11%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV--SSLIDMYSKCGSVEKAKKVFDEMVE 242
           VL+ C     I   + +H LVLK +F     +V  +    +YSKC     A  VFDEM +
Sbjct: 70  VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 129

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-------------- 288
           +++ +   M+ G  + GL  +      E+    + P+   ++ +I               
Sbjct: 130 RNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMV 189

Query: 289 -------GFSKSGDQVMVSKLFQLMRAK-------------GVEPDVVSWTSVISGLVHN 328
                  GF+     + VS     M AK               E + VSW ++ISG   N
Sbjct: 190 HAQIVMRGFAT---HIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 246

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
             + EAFD F  M +    P   T+ S+  A     ++  GKE+  CA  +G+EG++ V 
Sbjct: 247 GLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVG 306

Query: 389 SALVDMYAKCGFISEARTLFDK--MSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
           +AL+DMY+KCG + +AR++FD   ++      WN+MI G +  G   EA+EL+ QM +  
Sbjct: 307 TALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNG 366

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNM-MQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
              D  ++ +V  A      ++ G+ +  M ++    +M  + + A + D   + G L +
Sbjct: 367 ITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNA-IADAYSKCGFLED 425

Query: 505 AYEMIKTMSTEPDLFVWGALLGA 527
             ++   M  E D+  W  L+ A
Sbjct: 426 VRKVFDRME-ERDIVSWTTLVTA 447



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEG-DLHVR-SALVDMYAKCGFISEARTLFDKMSE 413
           +L  CA   ++R  K +HG  +    E  DL V  +    +Y+KC     A  +FD+M +
Sbjct: 70  VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 129

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL 472
           RN  +W  MI G   HG   +  + F +M     L D  +++A++ +C  +  +ELG+  
Sbjct: 130 RNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGK-- 187

Query: 473 FNMMQEKYKIMPRTEHY---ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             M+  +  +     H      ++++  + G + ++Y +   M TE +   W A++  C 
Sbjct: 188 --MVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMM-TEHNQVSWNAMISGCT 244

Query: 530 NHG 532
           ++G
Sbjct: 245 SNG 247


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 181/526 (34%), Positives = 281/526 (53%), Gaps = 43/526 (8%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           AYS  I+  I   +L+ GK++HAQ+++ G A    ++T L+  Y +  +I  +  +F+ +
Sbjct: 223 AYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMM 282

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
            + N   W A+       G H EA  +F  M       N++ + SV KA G L D+  G+
Sbjct: 283 TEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGK 342

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD-EMVEKDI-VAMNAMVSGYVQ 257
           ++ +   +     +  V ++LIDMYSKCGS+  A+ VFD   +   +    NAM+SGY Q
Sbjct: 343 EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQ 402

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTW---------------------------------- 283
            G + EAL L  ++    +  ++ T+                                  
Sbjct: 403 SGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVS 462

Query: 284 --NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
             N +   +SK G    V K+F  M     E D+VSWT++++    +   +EA  TF  M
Sbjct: 463 VNNAIADAYSKCGFLEDVRKVFDRME----ERDIVSWTTLVTAYSQSSLGEEALATFCLM 518

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             +GF P   T SS+L +CAS   +  G+++HG     G++ +  + SAL+DMYAKCG I
Sbjct: 519 REEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSI 578

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC 460
           +EA  +FDK+S  + V+W ++I G A HG  ++A++LF +ME    K + ++   VL AC
Sbjct: 579 TEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFAC 638

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            H G+VE G   F  M++ Y ++P  EHYAC++DLLGR GRL +A E I+ M  EP+  V
Sbjct: 639 SHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMV 698

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           W  LLG C+ HGN+EL EIAA+ +  + PE +A  +LL++ Y   G
Sbjct: 699 WQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETG 744



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 215/450 (47%), Gaps = 37/450 (8%)

Query: 123 YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
           Y++C     A  +FDE+P+ N+  W  +       G   +    F EM   G+  + F  
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 224

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            +++++C  L  +  G+ +H+ ++   F T  FV +SL++MY+K GS+E +  VF+ M E
Sbjct: 225 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 284

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
            + V+ NAM+SG    GL  EA +L   +      PN+ T  ++     K  D  M  ++
Sbjct: 285 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 344

Query: 303 FQLMRAKGVEPDVV---------------------------------SWTSVISGLVHNF 329
                  G+E +V+                                  W ++ISG   + 
Sbjct: 345 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 404

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVR 388
           C+ EA + + +M   G      T  S+  A A++ +++ G+ +HG  +  G++   + V 
Sbjct: 405 CSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVN 464

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           +A+ D Y+KCGF+ + R +FD+M ER+ V+W +++   +     +EA+  F  M EE   
Sbjct: 465 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 524

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            +  +F++VL +C  +  +E G+++  ++ +      +    A ++D+  + G + EA +
Sbjct: 525 PNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESA-LIDMYAKCGSITEAGK 583

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +   +S  PD+  W A++     HG +E A
Sbjct: 584 VFDKISN-PDIVSWTAIISGYAQHGLVEDA 612



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 195/452 (43%), Gaps = 64/452 (14%)

Query: 131 HARMLFDEIPKTNIHR--WIALTGAYARR-------------GYHQEAVTVFHEMHIQGL 175
           H    F   P+T + +  W+ LTG+ A               G ++       E + Q  
Sbjct: 59  HETQCFSTAPRT-VQKIDWVVLTGSLAVSVPSQTAKKSKIVVGRNRPESIGISETYQQTQ 117

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV--SSLIDMYSKCGSVEKA 233
            Q++     VL+ C     I   + +H LVLK +F     +V  +    +YSKC     A
Sbjct: 118 VQDLI---DVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAA 174

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS----- 288
             VFDEM ++++ +   M+ G  + GL  +      E+    + P+   ++ +I      
Sbjct: 175 CGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGL 234

Query: 289 ----------------GFSKSGDQVMVSKLFQLMRAK-------------GVEPDVVSWT 319
                           GF+     + VS     M AK               E + VSW 
Sbjct: 235 DSLELGKMVHAQIVMRGFAT---HIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWN 291

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++ISG   N  + EAFD F  M +    P   T+ S+  A     ++  GKE+  CA  +
Sbjct: 292 AMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASEL 351

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDK--MSERNTVTWNSMIFGCANHGYCDEAIE 437
           G+EG++ V +AL+DMY+KCG + +AR++FD   ++      WN+MI G +  G   EA+E
Sbjct: 352 GIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALE 411

Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM-MQEKYKIMPRTEHYACMVDL 495
           L+ QM +     D  ++ +V  A      ++ G+ +  M ++    +M  + + A + D 
Sbjct: 412 LYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNA-IADA 470

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
             + G L +  ++   M  E D+  W  L+ A
Sbjct: 471 YSKCGFLEDVRKVFDRME-ERDIVSWTTLVTA 501



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEG-DLHVR-SALVDMYAKCGFISEARTLFDKMSE 413
           +L  CA   ++R  K +HG  +    E  DL V  +    +Y+KC     A  +FD+M +
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 183

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL 472
           RN  +W  MI G   HG   +  + F +M     L D  +++A++ +C  +  +ELG+  
Sbjct: 184 RNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGK-- 241

Query: 473 FNMMQEKYKIMPRTEHY---ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             M+  +  +     H      ++++  + G + ++Y +   M TE +   W A++  C 
Sbjct: 242 --MVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMM-TEHNQVSWNAMISGCT 298

Query: 530 NHG 532
           ++G
Sbjct: 299 SNG 301


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 174/472 (36%), Positives = 270/472 (57%), Gaps = 7/472 (1%)

Query: 98  KILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           K LH+++++   L     +  KL+  Y  C    + R +FDEI   N+  +  +  +Y  
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G +Q+A+ VF  M  QG   + +  P VLKAC    ++  G +IH  V+K     + ++
Sbjct: 115 NGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYI 174

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            + L+ MY KC  ++ A++V DEM  +D+V+ N+MV+GY Q G   +AL L  E+   ++
Sbjct: 175 GNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKL 234

Query: 277 KPNVVTWNTLISGFSK-SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
           KP+  T  +L+   +  S D V+  K    M  K  E  ++SW  +I+  V+N   +EA 
Sbjct: 235 KPDAGTMGSLLPAVTNTSCDNVLYVK---DMFVKLKEKSLISWNVMIAVYVNNAMPNEAV 291

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           D + +M   G  P + +ISS+LPAC   +    G+ IH       +  +L + +AL+DMY
Sbjct: 292 DLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMY 351

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           AKCG + EAR +FD+M  R+ V+W SMI      G   +A+ LF +M +     D ++F 
Sbjct: 352 AKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFV 411

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           +VL AC H GLV+ G+  FN+M E Y I P  EHY CMVDLLGRAG++ EAY + + M  
Sbjct: 412 SVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPM 470

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           EP+  VWG+LL AC+ + ++ +A +AA HL +L PE +   +LL+++YA AG
Sbjct: 471 EPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAG 522



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 148/365 (40%), Gaps = 65/365 (17%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  +H  ++  GL     I   L++ Y +C+ +  AR + DE+P  ++  W ++   
Sbjct: 153 LWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAG 212

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G   +A+ +  EM    LK +   + S+L A  + S                    
Sbjct: 213 YAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTS-------------------- 252

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
                        C +V   K +F ++ EK +++ N M++ YV   +  EA++L  ++  
Sbjct: 253 -------------CDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQV 299

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-------------------- 313
             V+P+ V+ ++++         V+  ++ + +  K + P                    
Sbjct: 300 HGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKE 359

Query: 314 -----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                      DVVSWTS+IS    +    +A   FK+M   GF P      S+L AC+ 
Sbjct: 360 ARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSH 419

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNS 421
           A  +  G+         G+   +   + +VD+  + G I EA  L  +M  E N   W S
Sbjct: 420 AGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGS 479

Query: 422 MIFGC 426
           ++  C
Sbjct: 480 LLSAC 484



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 104/239 (43%), Gaps = 19/239 (7%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LS A    RI  Y+  + L+   +L                  LI  Y +C  +  AR +
Sbjct: 319 LSAAVLGRRIHEYVERKKLRPNLLLE---------------NALIDMYAKCGCLKEARAV 363

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FD++   ++  W ++  AY   G  ++AV +F +M   G   +     SVL AC H   +
Sbjct: 364 FDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLV 423

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG 254
             G    +L+ ++         + ++D+  + G +++A  +  +M +E +     +++S 
Sbjct: 424 DEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSA 483

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVE 312
              R  ++  + L+      ++ P    +  L+S  ++K+G    V  +  +M +KG++
Sbjct: 484 C--RVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIK 540


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 281/511 (54%), Gaps = 44/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH   + +G+     + + L + YT+C +   AR+LF E+P+ ++  W +L GA
Sbjct: 231 LSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGA 290

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y R G+ ++AV +F  M   GL+ +  VI  +L   G+ + +  G+  H+ +++ +FG  
Sbjct: 291 YCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDS 350

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--- 270
             + ++LI MY+KC  V+ A  VF  + ++D  + ++MV  Y + GL  + L L  E   
Sbjct: 351 VLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQF 410

Query: 271 ----------------------IGTPRVK-------------PNVVTWNTLISGFSKSGD 295
                                 +G  R+               N    N LIS + + G+
Sbjct: 411 RDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGN 470

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             +  K+F +++ K    DVV+W+++IS   H   + +A   + +ML++G  P SAT+ S
Sbjct: 471 FDVARKIFGMVKTK----DVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVS 526

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           ++ +CA+ A +  G+ IH     +G+E DL + +ALVDMY KCG +  AR +FD M ER+
Sbjct: 527 VISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERD 586

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            VTWN MI G   HG   +A++LF+ ME    K + L+F A+L+ACCH GLV+ G+ LF 
Sbjct: 587 VVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFT 646

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M+E Y + P  +HYACMVDLLG++G L EA +++  M  EPD  +WG LLGACK H N 
Sbjct: 647 RMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNF 705

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           E+    AK     +PE+    +L+++ Y +A
Sbjct: 706 EMGLRVAKKAFASDPENDGYYILMSNSYGSA 736



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 224/484 (46%), Gaps = 48/484 (9%)

Query: 93  ALQSGKILHAQLIVSGLAR---LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           AL  G  +HA  +  GL        +A+ L+  Y  C ++  A  LFDE+P+ ++  W A
Sbjct: 122 ALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTA 181

Query: 150 LTGAYARRGYHQEAVTVFHEM----HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
           +       G   E ++    M       G + N   + S L+ACG L ++  G  +H   
Sbjct: 182 VISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFG 241

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K   G    VVSSL  MY+KC S E A+ +F E+ EKD+V+  +++  Y + G A +A+
Sbjct: 242 VKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAV 301

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKS------------------GDQVMVSKLFQLMR 307
            L   +    ++P+ V  + L++G                      GD V++      M 
Sbjct: 302 ELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMY 361

Query: 308 AKGVEPDVV-------------SWTSVISGLVHNFCNDEAFDTFKEML---SQGFCPTSA 351
           AK  + D+              SW+S++        + +  + ++EM       F   + 
Sbjct: 362 AKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTN 421

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           ++ SI+ +C+    +R G+  H  +I      +  V +AL+ MY +CG    AR +F  +
Sbjct: 422 SLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMV 481

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQ 470
             ++ VTW+++I   ++ G+  +A+ L++QM  E  K +  +  +V+++C ++  +E G+
Sbjct: 482 KTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGE 541

Query: 471 RLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
            + + +++   +    +   C  +VD+  + G+L  A +M  +M  E D+  W  ++   
Sbjct: 542 LIHSHVKD---VGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGY 597

Query: 529 KNHG 532
             HG
Sbjct: 598 GMHG 601



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 205/481 (42%), Gaps = 54/481 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LHA  + SGL+     A KL++ Y+       A + F   P  +   W +L  +  R   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF----GTDAF 215
               ++    M   G + + F  P V  A   L  +  G  +H+  ++       G+ A 
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA- 146

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVEEI 271
           V SSL+ MY++CGSV  A ++FDEM E+D+VA  A++SG V  G   E L+    +V   
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSA 206

Query: 272 GTPRVKPNVVTW---------------NTLISGFS-KSGD---QVMVSKLF--------- 303
           G    +PN  T                 T + GF  K+G      +VS LF         
Sbjct: 207 GDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266

Query: 304 ---QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
              +++  +  E D+VSWTS+I         ++A + F  M   G  P    IS +L   
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            + A +R GK  H   +       + + +AL+ MYAKC  +  A T+F  + +R+T +W+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           SM+      G   + +EL+ +M+ R K D   +              LG+         Y
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDK-DEFEYDTNSLISIISSCSRLGRLRLGQSAHCY 445

Query: 481 KIMPRTEHYA--------CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            I    +H A         ++ + GR G    A ++   + T+ D+  W AL+ +  + G
Sbjct: 446 SI----KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK-DVVTWSALISSYSHLG 500

Query: 533 N 533
           +
Sbjct: 501 H 501



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D  ++ GK  HA ++         I   LI+ Y +C+ +  A  +F  + + +   W ++
Sbjct: 329 DAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSM 388

Query: 151 TGAYARRGYHQEAVTVFHEMHIQG---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             AY + G   + + ++ EM  +     + +   + S++ +C  L  +  G+  H   +K
Sbjct: 389 VVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIK 448

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
           H  G ++ V ++LI MY +CG+ + A+K+F  +  KD+V  +A++S Y   G + +AL L
Sbjct: 449 HLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLL 508

Query: 268 VEEIGTPRVKPNVVTWNTLISG-----------------------------------FSK 292
            +++ T  VKPN  T  ++IS                                    + K
Sbjct: 509 YDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMK 568

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            G   +  K+F  M    +E DVV+W  +ISG   +    +A   F  M      P S T
Sbjct: 569 CGQLGIARKMFDSM----LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLT 624

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
             +IL AC  A  + +G+E+        +E +L   + +VD+  K G + EA  +   M 
Sbjct: 625 FLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684

Query: 413 -ERNTVTWNSMIFGCANH 429
            E +   W +++  C  H
Sbjct: 685 IEPDGGIWGTLLGACKMH 702


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 264/451 (58%), Gaps = 5/451 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIP----KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +++ YT+   +  A  L DE+     K +I  W +L   YA +G  ++A+ V   M I G
Sbjct: 161 ILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAG 220

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           LK +   I S+L+A      +  G+ IH  +L++    D +V ++LIDMY K G +  A+
Sbjct: 221 LKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYAR 280

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
            VFD M  K+IVA N++VSG     L  +A  L+  +    +KP+ +TWN+L SG++  G
Sbjct: 281 MVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLG 340

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                  +   M+ KGV P+VVSWT++ SG   N     A   F +M  +G  P +AT+S
Sbjct: 341 KPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMS 400

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           ++L      + +  GKE+HG  +   +  D +V +ALVDMY K G +  A  +F  +  +
Sbjct: 401 TLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNK 460

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           +  +WN M+ G A  G  +E I  F+ M E   + D ++FT+VL+ C + GLV+ G + F
Sbjct: 461 SLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYF 520

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           ++M+ +Y I+P  EH +CMVDLLGR+G L EA++ I+TMS +PD  +WGA L +CK H +
Sbjct: 521 DLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRD 580

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           +ELAEIA K L  LEP ++AN M++ +LY+N
Sbjct: 581 LELAEIAWKRLQVLEPHNSANYMMMINLYSN 611



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 207/421 (49%), Gaps = 38/421 (9%)

Query: 97  GKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G  +H  LI  GL    T++ +  + FY  C ++  A  LFDE+PK +   W  +     
Sbjct: 6   GLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNL 65

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           R G  ++AV +F EM   G K     +  +L+ C +      G +IH  VL+    ++  
Sbjct: 66  RSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVS 125

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + +SLI MYS+ G +E ++KVF+ M ++++ + N+++S Y + G   +A+ L++E+    
Sbjct: 126 MCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICG 185

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
           +KP++VTWN+L+SG++                +KG+  D ++                  
Sbjct: 186 LKPDIVTWNSLLSGYA----------------SKGLSKDAIA------------------ 211

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
              K M   G  P++++ISS+L A A   +++ GK IHG  +   +  D++V + L+DMY
Sbjct: 212 -VLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMY 270

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFT 454
            K G++  AR +FD M  +N V WNS++ G +      +A  L  +ME E  K D +++ 
Sbjct: 271 IKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWN 330

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           ++ +    +G  E    +   M+EK  + P    +  +     + G    A ++   M  
Sbjct: 331 SLASGYATLGKPEKALDVIGKMKEK-GVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQE 389

Query: 515 E 515
           E
Sbjct: 390 E 390



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 137/338 (40%), Gaps = 74/338 (21%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH-------- 145
           L+ GK +H  ++ + L     + T LI  Y +   + +ARM+FD +   NI         
Sbjct: 241 LKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSG 300

Query: 146 ---------------------------RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
                                       W +L   YA  G  ++A+ V  +M  +G+  N
Sbjct: 301 LSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPN 360

Query: 179 IF-----------------------------------VIPSVLKACGHLSDIGTGEKIHS 203
           +                                     + ++LK  G LS + +G+++H 
Sbjct: 361 VVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHG 420

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
             L+ +   DA+V ++L+DMY K G ++ A ++F  +  K + + N M+ GY   G   E
Sbjct: 421 FCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEE 480

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVI 322
            +     +    ++P+ +T+ +++S    SG      K F LMR++ G+ P +   + ++
Sbjct: 481 GIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMV 540

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             L  +   DEA+D  + M      P +    + L +C
Sbjct: 541 DLLGRSGYLDEAWDFIQTM---SLKPDATIWGAFLSSC 575


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 281/511 (54%), Gaps = 44/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH   + +G+     + + L + YT+C +   AR+LF E+P+ ++  W +L GA
Sbjct: 231 LSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGA 290

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y R G+ ++AV +F  M   GL+ +  VI  +L   G+ + +  G+  H+ +++ +FG  
Sbjct: 291 YCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDS 350

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--- 270
             + ++LI MY+KC  V+ A  VF  + ++D  + ++MV  Y + GL  + L L  E   
Sbjct: 351 VLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQF 410

Query: 271 ----------------------IGTPRVK-------------PNVVTWNTLISGFSKSGD 295
                                 +G  R+               N    N LIS + + G+
Sbjct: 411 RDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGN 470

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             +  K+F +++ K    DVV+W+++IS   H   + +A   + +ML++G  P SAT+ S
Sbjct: 471 FDVARKIFGMVKTK----DVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVS 526

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           ++ +CA+ A +  G+ IH     +G+E DL + +ALVDMY KCG +  AR +FD M ER+
Sbjct: 527 VISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERD 586

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            VTWN MI G   HG   +A++LF+ ME    K + L+F A+L+ACCH GLV+ G+ LF 
Sbjct: 587 VVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFT 646

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M+E Y + P  +HYACMVDLLG++G L EA +++  M  EPD  +WG LLGACK H N 
Sbjct: 647 RMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNF 705

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           E+    AK     +PE+    +L+++ Y +A
Sbjct: 706 EMGLRVAKKAFASDPENDGYYILMSNSYGSA 736



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 225/484 (46%), Gaps = 48/484 (9%)

Query: 93  ALQSGKILHAQLIVSGLAR---LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           AL  G  +HA  +  GL        +A+ L+  Y  C ++  A  LFDE+P+ ++  W A
Sbjct: 122 ALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTA 181

Query: 150 LTGAYARRGYHQEAVTVFHEM----HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
           +       G   E ++    M       G + N   + S L+ACG L ++  G  +H   
Sbjct: 182 VISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFG 241

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K   G    VVSSL  MY+KC S E A+ +F E+ EKD+V+  +++  Y + G A +A+
Sbjct: 242 VKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAV 301

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKS------------------GDQVMVSKLFQLMR 307
            L   +    ++P+ V  + L++G                      GD V++      M 
Sbjct: 302 ELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMY 361

Query: 308 AKGVEPDVV-------------SWTSVISGLVHNFCNDEAFDTFKEMLSQG---FCPTSA 351
           AK  + D+              SW+S++        + +  + ++EM  +    F   + 
Sbjct: 362 AKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTN 421

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           ++ SI+ +C+    +R G+  H  +I      +  V +AL+ MY +CG    AR +F  +
Sbjct: 422 SLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMV 481

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQ 470
             ++ VTW+++I   ++ G+  +A+ L++QM  E  K +  +  +V+++C ++  +E G+
Sbjct: 482 KTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGE 541

Query: 471 RLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
            + + +++   +    +   C  +VD+  + G+L  A +M  +M  E D+  W  ++   
Sbjct: 542 LIHSHVKD---VGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGY 597

Query: 529 KNHG 532
             HG
Sbjct: 598 GMHG 601



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 205/481 (42%), Gaps = 54/481 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LHA  + SGL+     A KL++ Y+       A + F   P  +   W +L  +  R   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF----GTDAF 215
               ++    M   G + + F  P V  A   L  +  G  +H+  ++       G+ A 
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA- 146

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVEEI 271
           V SSL+ MY++CGSV  A ++FDEM E+D+VA  A++SG V  G   E L+    +V   
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSA 206

Query: 272 GTPRVKPNVVTW---------------NTLISGFS-KSGD---QVMVSKLF--------- 303
           G    +PN  T                 T + GF  K+G      +VS LF         
Sbjct: 207 GDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266

Query: 304 ---QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
              +++  +  E D+VSWTS+I         ++A + F  M   G  P    IS +L   
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            + A +R GK  H   +       + + +AL+ MYAKC  +  A T+F  + +R+T +W+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           SM+      G   + +EL+ +M+ R K D   +              LG+         Y
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDK-DEFEYDTNSLISIISSCSRLGRLRLGQSAHCY 445

Query: 481 KIMPRTEHYA--------CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            I    +H A         ++ + GR G    A ++   + T+ D+  W AL+ +  + G
Sbjct: 446 SI----KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK-DVVTWSALISSYSHLG 500

Query: 533 N 533
           +
Sbjct: 501 H 501



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 8/393 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+  H   I       + +A  LI+ Y  C N   AR +F  +   ++  W AL  +
Sbjct: 436 LRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISS 495

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y+  G+ ++A+ ++ +M  +G+K N   + SV+ +C +L+ +  GE IHS V       D
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECD 555

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + ++L+DMY KCG +  A+K+FD M+E+D+V  N M+SGY   G A +AL L   +  
Sbjct: 556 LSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMER 615

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             VKPN +T+  ++S    +G      +LF  M    +EP++  +  ++  L  +    E
Sbjct: 616 GNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQE 675

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH--VRSAL 391
           A D    M  +   P      ++L AC    N   G  +   A     E D +  + S  
Sbjct: 676 AEDVVSAMPIE---PDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNS 732

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSM-IFGCANHGYCDEAIELFNQMEERKKLDH 450
                K   I + R +        ++ W+++ I G   +        LF Q E R   D 
Sbjct: 733 YGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICGFMKNQLTQWQHSLFEQSEFRSSEDM 792

Query: 451 -LSFTAVLTACCHV-GLVELGQRLFNMMQEKYK 481
            +SF + + +   V GL E G  + +  + + K
Sbjct: 793 CISFVSGIWSESMVNGLTEWGNEVVDSSEFRNK 825



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D  ++ GK  HA ++         I   LI+ Y +C+ +  A  +F  + + +   W ++
Sbjct: 329 DAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSM 388

Query: 151 TGAYARRGYHQEAVTVFHEMHIQG---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             AY + G   + + ++ EM  +     + +   + S++ +C  L  +  G+  H   +K
Sbjct: 389 VVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIK 448

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
           H  G ++ V ++LI MY +CG+ + A+K+F  +  KD+V  +A++S Y   G + +AL L
Sbjct: 449 HLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLL 508

Query: 268 VEEIGTPRVKPNVVTWNTLISG-----------------------------------FSK 292
            +++ T  VKPN  T  ++IS                                    + K
Sbjct: 509 YDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMK 568

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            G   +  K+F  M    +E DVV+W  +ISG   +    +A   F  M      P S T
Sbjct: 569 CGQLGIARKMFDSM----LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLT 624

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
             +IL AC  A  + +G+E+        +E +L   + +VD+  K G + EA  +   M 
Sbjct: 625 FLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684

Query: 413 -ERNTVTWNSMIFGCANH 429
            E +   W +++  C  H
Sbjct: 685 IEPDGGIWGTLLGACKMH 702


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/510 (35%), Positives = 272/510 (53%), Gaps = 41/510 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +HA++   GL     + T L++ YT+C ++  A  +F+ +   N+  W A+  
Sbjct: 321 ALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIA 380

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A+ G  +EA   F++M   G++ N     S+L AC   S +  G +IH  ++K  + T
Sbjct: 381 GFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYIT 440

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L+ MY+KCGS+  A+ VF+ + ++++VA NAM++ YVQ      A+   + + 
Sbjct: 441 DDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALL 500

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              +KP+  T+                                   N L+S F   GD +
Sbjct: 501 KEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLM 560

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               LF  M     E D+VSW ++I+G V +  N  AFD FK M   G  P   T + +L
Sbjct: 561 SAMNLFNDMP----ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLL 616

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACAS   +  G+ +H       ++ D+ V + L+ MY KCG I +A  +F  + ++N  
Sbjct: 617 NACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVY 676

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +W SMI G A HG   EA+ELF QM+ E  K D ++F   L+AC H GL++ G   F  M
Sbjct: 677 SWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM 736

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           ++ + I PR EHY CMVDL GRAG L EA E I  M  +PD  +WGALLGAC+ H ++EL
Sbjct: 737 KD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVEL 795

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE  A+   EL+P      ++L+++YA AG
Sbjct: 796 AEKVAQKKLELDPNDDGVYVILSNIYAAAG 825



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 246/507 (48%), Gaps = 42/507 (8%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           + + S    +    YS  +++ I+ + L  G+ +H  +  S +     +   LI+ Y +C
Sbjct: 93  LSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKC 152

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
            N + A+ +FDE+P  +++ W  L G Y +   ++EA  +  +M   G+K + +    +L
Sbjct: 153 GNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYML 212

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
            AC    ++  G ++ SL+L   + TD FV ++LI+M+ KCG V+ A KVF+ +  +D++
Sbjct: 213 NACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------------------- 283
              +M++G  +     +A NL + +    V+P+ V +                       
Sbjct: 273 TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332

Query: 284 ------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                         L+S ++K G      ++F L++ +    +VVSWT++I+G   +   
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR----NVVSWTAMIAGFAQHGRM 388

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EAF  F +M+  G  P   T  SIL AC+  + +++G++IH   I  G   D  VR+AL
Sbjct: 389 EEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTAL 448

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDH 450
           + MYAKCG + +AR +F+++S++N V WN+MI     H   D A+  F   ++E  K D 
Sbjct: 449 LSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDS 508

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +FT++L  C     +ELG+ + +++  +            +V +    G L  A  +  
Sbjct: 509 STFTSILNVCKSPDALELGKWVQSLII-RAGFESDLHIRNALVSMFVNCGDLMSAMNLFN 567

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELA 537
            M  E DL  W  ++     HG  + A
Sbjct: 568 DMP-ERDLVSWNTIIAGFVQHGENQFA 593



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 242/498 (48%), Gaps = 48/498 (9%)

Query: 103 QLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDE-IPKTNIHRWIALTGAYARRGY 159
           Q IVS   RL  I  +  TF  YT   +  +++   +E +   N  R  A     ++ G 
Sbjct: 26  QFIVSFSPRLV-ILEEFDTFRLYTTSFSGSYSKGQGNEFVDIKNTQRANAFLNRLSKAGQ 84

Query: 160 HQEAVTVFHEM---HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             EA+ V   +   HIQ  +Q      S+L+ C    ++G GE+IH+ +       D F+
Sbjct: 85  LSEAMLVLLSVDSPHIQIHRQ---TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFM 141

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            + LI MY+KCG+   AK++FDEM +KD+ + N ++ GYVQ     EA  L E++    V
Sbjct: 142 WNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGV 201

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQL--------------------MRAKGVEP--- 313
           KP+  T+  +++  + + +     +LF L                    ++  GV+    
Sbjct: 202 KPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALK 261

Query: 314 --------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                   D+++WTS+I+GL  +    +A + F+ M  +G  P      S+L AC     
Sbjct: 262 VFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEA 321

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + +GK +H     +G++ +++V +AL+ MY KCG + +A  +F+ +  RN V+W +MI G
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAG 381

Query: 426 CANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIM 483
            A HG  +EA   FN+M E   + + ++F ++L AC     ++ G+++ + +++  Y   
Sbjct: 382 FAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITD 441

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE--LAEIAA 541
            R      ++ +  + G L +A  + + +S + ++  W A++ A   H   +  +A   A
Sbjct: 442 DRVR--TALLSMYAKCGSLMDARNVFERISKQ-NVVAWNAMITAYVQHEKYDNAVATFQA 498

Query: 542 KHLSELEPESAANNMLLT 559
                ++P+S+    +L 
Sbjct: 499 LLKEGIKPDSSTFTSILN 516



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 172/372 (46%), Gaps = 32/372 (8%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  AL+ G+ +H ++I +G     ++ T L++ Y +C ++  AR +F+ I K N+  W A
Sbjct: 419 RPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNA 478

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +  AY +   +  AV  F  +  +G+K +     S+L  C     +  G+ + SL+++  
Sbjct: 479 MITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAG 538

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F +D  + ++L+ M+  CG +  A  +F++M E+D+V+ N +++G+VQ G    A +  +
Sbjct: 539 FESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFK 598

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV------------- 316
            +    VKP+ +T+  L++  +         +L  L+    ++ DVV             
Sbjct: 599 MMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCG 658

Query: 317 ------------------SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
                             SWTS+I+G   +    EA + F +M  +G  P   T    L 
Sbjct: 659 SIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALS 718

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTV 417
           ACA A  ++ G           +E  +     +VD++ + G + EA    +KM  + ++ 
Sbjct: 719 ACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSR 778

Query: 418 TWNSMIFGCANH 429
            W +++  C  H
Sbjct: 779 LWGALLGACQVH 790


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 281/511 (54%), Gaps = 44/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH   + +G+     + + L + YT+C +   AR+LF E+P+ ++  W +L GA
Sbjct: 231 LSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGA 290

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y R G+ ++AV +F  M   GL+ +  VI  +L   G+ + +  G+  H+ +++ +FG  
Sbjct: 291 YCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDS 350

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--- 270
             + ++LI MY+KC  V+ A  VF  + ++D  + ++MV  Y + GL  + L L  E   
Sbjct: 351 VLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQF 410

Query: 271 ----------------------IGTPRVK-------------PNVVTWNTLISGFSKSGD 295
                                 +G  R+               N    N LIS + + G+
Sbjct: 411 RDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGN 470

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             +  K+F +++ K    DVV+W+++IS   H   + +A   + +ML++G  P SAT+ S
Sbjct: 471 FDVARKIFGMVKTK----DVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVS 526

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           ++ +CA+ A +  G+ IH     +G+E DL + +ALVDMY KCG +  AR +FD M ER+
Sbjct: 527 VISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERD 586

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            VTWN MI G   HG   +A++LF+ ME    K + L+F A+L+ACCH GLV+ G+ LF 
Sbjct: 587 VVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFT 646

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M+E Y + P  +HYACMVDLLG++G L EA +++  M  EPD  +WG LLGACK H N 
Sbjct: 647 RMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNF 705

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           E+    AK     +PE+    +L+++ Y +A
Sbjct: 706 EMGLRVAKKAFASDPENDGYYILMSNSYGSA 736



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 224/484 (46%), Gaps = 48/484 (9%)

Query: 93  ALQSGKILHAQLIVSGLAR---LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           AL  G  +HA  +  GL        +A+ L+  Y  C ++  A  LFDE+P+ ++  W A
Sbjct: 122 ALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTA 181

Query: 150 LTGAYARRGYHQEAVTVFHEM----HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
           +       G   E ++    M       G + N   + S L+ACG L ++  G  +H   
Sbjct: 182 VISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFG 241

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K   G    VVSSL  MY+KC S E A+ +F E+ EKD+V+  +++  Y + G A +A+
Sbjct: 242 VKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAV 301

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKS------------------GDQVMVSKLFQLMR 307
            L   +    ++P+ V  + L++G                      GD V++      M 
Sbjct: 302 ELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMY 361

Query: 308 AKGVEPDVV-------------SWTSVISGLVHNFCNDEAFDTFKEML---SQGFCPTSA 351
           AK  + D+              SW+S++        + +  + ++EM       F   + 
Sbjct: 362 AKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTN 421

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           ++ SI+ +C+    +R G+  H  +I      +  V +AL+ MY +CG    AR +F  +
Sbjct: 422 SLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMV 481

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQ 470
             ++ VTW+++I   ++ G+  +A+ L++QM  E  K +  +  +V+++C ++  +E G+
Sbjct: 482 KTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGE 541

Query: 471 RLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
            + + +++   +    +   C  +VD+  + G+L  A +M  +M  E D+  W  ++   
Sbjct: 542 LIHSHVKD---VGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGY 597

Query: 529 KNHG 532
             HG
Sbjct: 598 GMHG 601



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 205/481 (42%), Gaps = 54/481 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LHA  + SGL+     A KL++ Y+       A + F   P  +   W +L  +  R   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF----GTDAF 215
               ++    M   G + + F  P V  A   L  +  G  +H+  ++       G+ A 
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA- 146

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVEEI 271
           V SSL+ MY++CGSV  A ++FDEM E+D+VA  A++SG V  G   E L+    +V   
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSA 206

Query: 272 GTPRVKPNVVTW---------------NTLISGFS-KSGD---QVMVSKLF--------- 303
           G    +PN  T                 T + GF  K+G      +VS LF         
Sbjct: 207 GDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266

Query: 304 ---QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
              +++  +  E D+VSWTS+I         ++A + F  M   G  P    IS +L   
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            + A +R GK  H   +       + + +AL+ MYAKC  +  A T+F  + +R+T +W+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           SM+      G   + +EL+ +M+ R K D   +              LG+         Y
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDK-DEFEYDTNSLISIISSCSRLGRLRLGQSAHCY 445

Query: 481 KIMPRTEHYA--------CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            I    +H A         ++ + GR G    A ++   + T+ D+  W AL+ +  + G
Sbjct: 446 SI----KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTK-DVVTWSALISSYSHLG 500

Query: 533 N 533
           +
Sbjct: 501 H 501



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 8/393 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+  H   I       + +A  LI+ Y  C N   AR +F  +   ++  W AL  +
Sbjct: 436 LRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISS 495

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y+  G+ ++A+ ++ +M  +G+K N   + SV+ +C +L+ +  GE IHS V       D
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECD 555

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + ++L+DMY KCG +  A+K+FD M+E+D+V  N M+SGY   G A +AL L   +  
Sbjct: 556 LSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMER 615

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             VKPN +T+  ++S    +G      +LF  M    +EP++  +  ++  L  +    E
Sbjct: 616 GNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQE 675

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH--VRSAL 391
           A D    M  +   P      ++L AC    N   G  +   A     E D +  + S  
Sbjct: 676 AEDVVSAMPIE---PDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNS 732

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSM-IFGCANHGYCDEAIELFNQMEERKKLDH 450
                K   I + R +        ++ W+++ I G   +        LF Q E R   D 
Sbjct: 733 YGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICGFMKNQLTQWQHSLFEQSEFRSSEDM 792

Query: 451 -LSFTAVLTACCHV-GLVELGQRLFNMMQEKYK 481
            +SF + + +   V GL E G  + +  + + K
Sbjct: 793 CISFVSGIWSESMVNGLTEWGNEVVDSSEFRNK 825



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 43/378 (11%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D  ++ GK  HA ++         I   LI+ Y +C+ +  A  +F  + + +   W ++
Sbjct: 329 DAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSM 388

Query: 151 TGAYARRGYHQEAVTVFHEMHIQG---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             AY + G   + + ++ EM  +     + +   + S++ +C  L  +  G+  H   +K
Sbjct: 389 VVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIK 448

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
           H  G ++ V ++LI MY +CG+ + A+K+F  +  KD+V  +A++S Y   G + +AL L
Sbjct: 449 HLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLL 508

Query: 268 VEEIGTPRVKPNVVTWNTLISG-----------------------------------FSK 292
            +++ T  VKPN  T  ++IS                                    + K
Sbjct: 509 YDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMK 568

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            G   +  K+F  M    +E DVV+W  +ISG   +    +A   F  M      P S T
Sbjct: 569 CGQLGIARKMFDSM----LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLT 624

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
             +IL AC  A  + +G+E+        +E +L   + +VD+  K G + EA  +   M 
Sbjct: 625 FLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684

Query: 413 -ERNTVTWNSMIFGCANH 429
            E +   W +++  C  H
Sbjct: 685 IEPDGGIWGTLLGACKMH 702


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 263/476 (55%), Gaps = 40/476 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA +++ GL     + +K++ FY    +I  +  +F+ I + +   + ++  A
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRA 145

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YAR G+ +  V  +  MH  G   + F  P VLK+   L  +  G+ +H L+L+     D
Sbjct: 146 YARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 205

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V +SLI +Y KCG +  A KVFD M  +D+ + NA+++GY + G    AL + E +  
Sbjct: 206 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPW 265

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                N+V+W T+ISG+S+SG       LF  M    V+ D                   
Sbjct: 266 ----RNIVSWTTMISGYSQSGLAQQALSLFDEM----VKED------------------- 298

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
                      G  P   TI S+LPACA  + + RG++IH  A  MG+  +  V  AL  
Sbjct: 299 ----------SGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTA 348

Query: 394 MYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           MYAKCG + +AR  FDK+  +E+N + WN+MI   A++G+  +A+  F +M +   + D 
Sbjct: 349 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 408

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT +L+ C H GLV++G + FN M   Y I PR EHYAC+ DLLGRAGRLAEA +++ 
Sbjct: 409 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 468

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M       +WG+LL AC+ H N+E+AE AA+ L  LEPE+  N +LL+++YA AG
Sbjct: 469 EMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAG 524


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/528 (34%), Positives = 284/528 (53%), Gaps = 37/528 (7%)

Query: 70  ISRSFHLSPA--AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
           + R+ +LSP    Y+  +     D+ L    +LHA  I+ G      + + L+  Y +  
Sbjct: 101 LRRNTNLSPDNFTYAFAVAACSNDKHLM---LLHAHSIIDGYGSNVFVGSALVDLYCKFS 157

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
            + +AR +FD +P+ +   W  +     +     +++ +F EM   G++ +   + +VL 
Sbjct: 158 RVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLP 217

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           A   L ++  G  I  L LK  FG   +V++ LI +YSKCG V  A+ +F  +   D++A
Sbjct: 218 AAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIA 277

Query: 248 MNAMVSGYVQRGLATEALNLVEEI------------------GTPR-------------V 276
            NAM+SG+   G    ++ L  E+                   +P              V
Sbjct: 278 YNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCV 337

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           K  ++   T+ + F+   +++    L + +  +  E  VV+W ++ISG   N   + A  
Sbjct: 338 KSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAIS 397

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            FKEM+   F P + TI++IL ACA   ++  GK +H       +E +++V +ALVDMYA
Sbjct: 398 LFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYA 457

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTA 455
           KCG ISEA  LFD MSE+NTVTWN+MIFG   HGY  EA++L+N+M         ++F +
Sbjct: 458 KCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLS 517

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           VL AC H GLV  G+ +F+ M  KY+I P  EHYACMVD+LGR+G+L +A E IK M  E
Sbjct: 518 VLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVE 577

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           P   VWG LLGAC  H + ++A +A++ L EL+P S    +LL+++Y+
Sbjct: 578 PGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYS 625



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 220/473 (46%), Gaps = 54/473 (11%)

Query: 101 HAQLIVSG----LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           HAQ I++G    LA LT++  KL  F        HAR LF  +PK +I  +  L   ++ 
Sbjct: 32  HAQFILNGYRFDLATLTKLTQKLFDF----SATRHARALFFSVPKPDIFLFNVLVRGFSL 87

Query: 157 RGYHQEAVTVF-HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                 +++++ H      L  + F     + AC +   +     +H+  +   +G++ F
Sbjct: 88  NDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVF 144

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP- 274
           V S+L+D+Y K   V  A+KVFD M E+D V  N M++G V+     +++ L  E+    
Sbjct: 145 VGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADG 204

Query: 275 -RVKPNVVT---------------------------------WNTLISGFSKSGDQVMVS 300
            RV  + VT                                    LIS +SK GD     
Sbjct: 205 VRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTAR 264

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            LF+ +      PD++++ ++ISG   N   + +   F+E+L  G   +S+TI  ++P  
Sbjct: 265 LLFRRIN----RPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLH 320

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +   ++     IHG  +  G+  +  V +A   +Y K   I  AR LFD+  E+  V WN
Sbjct: 321 SPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWN 380

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI G   +G  + AI LF +M + +   + ++ T +L+AC  +G +  G+ + ++++ +
Sbjct: 381 AMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSE 440

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             + P       +VD+  + G ++EA+++  +MS E +   W  ++     HG
Sbjct: 441 -NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMIFGYGLHG 491



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 7/226 (3%)

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAANMRRGK 370
           +PD+  +  ++ G   N     +   +  +  +    P + T +  + AC++  ++    
Sbjct: 72  KPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML-- 129

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            +H  +I+ G   ++ V SALVD+Y K   +  AR +FD M ER+TV WN+MI G   + 
Sbjct: 130 -LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNC 188

Query: 431 YCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
             D++I+LF +M  +  ++D  + TAVL A   +  +++G  +   +  K          
Sbjct: 189 CFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGI-QCLALKIGFGFCDYVL 247

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             ++ L  + G +  A  + + ++  PDL  + A++     +G  E
Sbjct: 248 TGLISLYSKCGDVNTARLLFRRIN-RPDLIAYNAMISGFTANGGTE 292


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 178/508 (35%), Positives = 272/508 (53%), Gaps = 33/508 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL  G  +H      G+     +AT ++T Y  C  +  A+ LF EI   ++  W A+ 
Sbjct: 2   RALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAII 61

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A+ + GY QEA+++F  M  +GL+ N  ++ S L AC  +S +  G+ +H   +K +  
Sbjct: 62  AAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVD 121

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D  V ++L+ MY+KCG    A  +F+ M  KD+V  NAM++GY Q G    AL +  ++
Sbjct: 122 LDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKL 181

Query: 272 GTPRVKPNVVTWNTLISGFSKSGD------------------QVMVSKLFQLMRAK---- 309
               + PN  T   L+  F+   D                  +  V      M AK    
Sbjct: 182 QLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSL 241

Query: 310 ----------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                     G   D VSW  +I+G +H+    +AF  F +M  +   P   TI ++LPA
Sbjct: 242 SGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPA 301

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            A  + +R G  +H   I MG +    V + L+DMYAKCG++  +  +F +M  ++TV+W
Sbjct: 302 VAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSW 361

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N M+ G A HG    AIELF++M++ + +LD  SF  VL+AC H GL+  G+++F+ M +
Sbjct: 362 NVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSK 421

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           ++++ P  EHYACM DLLGRAG   E  ++IK+M  EPD  VWGALLGA   H N++LAE
Sbjct: 422 QHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAE 481

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
            A  HL +LE ++  +   L++ YA +G
Sbjct: 482 FALHHLDKLEHKNLTHYAALSNTYARSG 509


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 183/504 (36%), Positives = 265/504 (52%), Gaps = 34/504 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+++H ++   G      + + LI FY+E   IH AR LFD +P  +   W  +   Y +
Sbjct: 166 GRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVK 225

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G    A  VF EM       N      VL  C     I  G ++H LV+      D+ V
Sbjct: 226 NGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPV 285

Query: 217 VSS--LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            ++  LID+Y KC  VE A+K+FD+    DIV   AM+SGYV  G+   AL +   +   
Sbjct: 286 ANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE 345

Query: 275 RVKPNVVTWNTLISGFSK------------------SGDQVMVSKLFQLMRAK------- 309
           R++ N VT  +++   +                    G    V      M AK       
Sbjct: 346 RMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 405

Query: 310 -----GV-EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                G+ + D V W S+I+    N   +EA D F++M   G      +IS+ L ACA+ 
Sbjct: 406 HQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANL 465

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
             +  GKEIH   +      DL   SAL+DMY+KCG +  A  +FD M E+N V+WNS+I
Sbjct: 466 PALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSII 525

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
               NHG   +++ LF+ M  +  + DH++F A+++AC H G V+ G   F  M E+  I
Sbjct: 526 AAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGI 585

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           M R EHYACMVDL GRAGRL EA+ MI +M   PD  VWG LLGAC+ HGN+ELAE+A++
Sbjct: 586 MARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASR 645

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
           +L +L+P+++   +LL++++ANAG
Sbjct: 646 NLFDLDPQNSGYYVLLSNVHANAG 669



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/483 (30%), Positives = 237/483 (49%), Gaps = 48/483 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  G+  HAQ++V+G+     + TKL+  Y  C     A+ +F ++       W  +  
Sbjct: 61  GLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIR 120

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   G    A+  + +M   G   + +  P V+KACG L+ +  G  +H  +    F  
Sbjct: 121 GFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFEL 180

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV SSLI  YS+ G +  A+ +FD M  KD V  N M++GYV+ G    A  +  E+ 
Sbjct: 181 DVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMR 240

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMV---SKLFQLMRAKGVE----------------- 312
                PN VT+  ++   S    ++M+   S+L  L+ + G+E                 
Sbjct: 241 RTETNPNSVTFACVL---SVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFK 297

Query: 313 ----------------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                            D+V  T++ISG V N  N+ A + F+ +L +     S T++S+
Sbjct: 298 CRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASV 357

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPACA  A +  GKE+HG  +  G  G  +V SA++DMYAKCG +  A   F  +S+++ 
Sbjct: 358 LPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDA 417

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFN- 474
           V WNSMI  C+ +G  +EAI+LF QM     K D +S +A L+AC ++  +  G+ +   
Sbjct: 418 VCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAF 477

Query: 475 MMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           MM+  +    R++ +A   ++D+  + G L  A  +  TM  E +   W +++ A  NHG
Sbjct: 478 MMRGAF----RSDLFAESALIDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAAYGNHG 532

Query: 533 NIE 535
            ++
Sbjct: 533 RLK 535



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 139/278 (50%), Gaps = 10/278 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK LH  ++ +G      + + ++  Y +C  +  A   F  I   +   W ++  
Sbjct: 366 ALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMIT 425

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           + ++ G  +EA+ +F +M + G K +   I + L AC +L  +  G++IH+ +++ +F +
Sbjct: 426 SCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRS 485

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  S+LIDMYSKCG+++ A +VFD M EK+ V+ N++++ Y   G   ++LNL   + 
Sbjct: 486 DLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGML 545

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN- 331
              ++P+ VT+  +IS    +G    V +     R    E  +++     + +V  F   
Sbjct: 546 GDGIQPDHVTFLAIISACGHAGQ---VDEGIHYFRCMTEELGIMARMEHYACMVDLFGRA 602

Query: 332 ---DEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
              +EAF     M    F P +    ++L AC    N+
Sbjct: 603 GRLNEAFGMINSM---PFSPDAGVWGTLLGACRLHGNV 637



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 174/397 (43%), Gaps = 54/397 (13%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L+ C   S +  G + H+ +L +  G +  + + L+ MY  CG+   AK +F ++   
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLW 110

Query: 244 DIVAMNAMVSGYVQRGLATEAL----------NLVEEIGTPRV----------------- 276
                N M+ G+   G    AL           L ++   P V                 
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 277 --------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                   + +V   ++LI  +S++G       LF  M +K    D V W  +++G V N
Sbjct: 171 DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK----DGVLWNVMLNGYVKN 226

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
              D A   F EM      P S T + +L  CAS   +  G ++HG  +  G+E D  V 
Sbjct: 227 GDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVA 286

Query: 389 S--ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEER 445
           +  AL+D+Y KC  +  AR +FD+ +  + V   +MI G   +G  + A+E+F   ++ER
Sbjct: 287 NTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQER 346

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV-----DLLGRAG 500
            + + ++  +VL AC  +  + LG+ L         I+      +C V     D+  + G
Sbjct: 347 MRANSVTLASVLPACAGLAALTLGKELHG------HILKNGHGGSCYVGSAIMDMYAKCG 400

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           RL  A++    +S + D   W +++ +C  +G  E A
Sbjct: 401 RLDLAHQTFIGIS-DKDAVCWNSMITSCSQNGKPEEA 436


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 165/428 (38%), Positives = 260/428 (60%), Gaps = 6/428 (1%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           ++  W ++   +A+     +A+ +F EM + G++ N   + S + AC  L  +  G ++H
Sbjct: 320 DVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELH 379

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
           S+ +K     D  V +SLIDMYSK G +E A++VFD +++KD+   N+M+ GY Q G   
Sbjct: 380 SVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCG 439

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSV 321
           +A +L  ++    V PNVVTWN +ISG+ ++GD+     LF  M   G ++ D  SW S+
Sbjct: 440 KAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSL 499

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFC--PTSATISSILPACASAANMRRGKEIHGCAIVM 379
           I+G + N   ++A   F++M  Q FC  P S T+ SILPACA+    ++ KEIHGC +  
Sbjct: 500 IAGYLQNGHKNKALGIFRQM--QSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRR 557

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
            +  +L V + L+D YAK G I  A+T+F  +S ++ ++WNS+I G   HG  D A++LF
Sbjct: 558 NLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLF 617

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           +QM +   K    +F +++ A    G+V+ G+++F+ M E Y+I+P  EH++ M+DLLGR
Sbjct: 618 DQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGR 677

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           +G+L EA E I+ M+ EPD  +W ALL A K HGNI LA  A + L ELEP + + +  +
Sbjct: 678 SGKLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQI 737

Query: 559 TDLYANAG 566
             +YA +G
Sbjct: 738 LQMYALSG 745



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/507 (30%), Positives = 277/507 (54%), Gaps = 26/507 (5%)

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHA 132
           ++ P  Y + ++  I   + + G+ LHA++   GL       + TKL++ Y +C ++  A
Sbjct: 82  NVKPNTYMQLLQSCIDQGSAELGRKLHARI---GLLEEMNPFVETKLVSMYAKCGSLGEA 138

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R +F E+ + N++ W A+ GAY+R    +E V  F  M   G+  + F++P +L+ACG+ 
Sbjct: 139 RKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNC 198

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
            D  TG+ IHSLV++     +  V +S++ +Y+KCG +  A++ F+ M  +D V+ N+++
Sbjct: 199 GDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSII 258

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
           +GY Q+G   ++  L E++    ++P +VTWN LI+ +S+SG      +L + M +  + 
Sbjct: 259 TGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIV 318

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           PDV +WTS+ISG   N    +A + F+EML  G  P   T++S + ACAS   +++G E+
Sbjct: 319 PDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMEL 378

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H  A+ +G   DL V ++L+DMY+K G + +AR +FD + +++  TWNSMI G    GYC
Sbjct: 379 HSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYC 438

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            +A +LF +M E     + +++ A+++     G  +    LF+ M++   I   T  +  
Sbjct: 439 GKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNS 498

Query: 492 MVDLLGRAGRLAEAYEMIKTMST---EPDLFVWGALLGACKNHGNIELAEIAAKHLSE-- 546
           ++    + G   +A  + + M +    P+     ++L AC N        +AAK + E  
Sbjct: 499 LIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANL-------VAAKKVKEIH 551

Query: 547 -------LEPESAANNMLLTDLYANAG 566
                  L  E +  N L+ D YA +G
Sbjct: 552 GCILRRNLGSELSVANCLI-DTYAKSG 577



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 150/300 (50%), Gaps = 17/300 (5%)

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           RM  D + K +   W +L   Y + G+  +A+ +F +M    ++ N   + S+L AC +L
Sbjct: 482 RMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANL 541

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
                 ++IH  +L+ + G++  V + LID Y+K G++  A+ +F  +  KDI++ N+++
Sbjct: 542 VAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLI 601

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ----LMRA 308
           +GYV  G +  AL+L +++    VKP+  T+ ++I  FS SG   MV K  Q    +M  
Sbjct: 602 AGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSG---MVDKGKQVFSSMMED 658

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
             + P +   +++I  L  +    EA +  ++M  +   P S   +++L A     N+  
Sbjct: 659 YQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIE---PDSCIWAALLTASKIHGNI-- 713

Query: 369 GKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           G  I     ++ +E  +  +   ++ MYA  G   +   L  + SE+ + T   +  GC+
Sbjct: 714 GLAIRAGECLLELEPSNFSIHQQILQMYALSGKFEDVSKL--RKSEKRSETKQPL--GCS 769


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 173/478 (36%), Positives = 277/478 (57%), Gaps = 11/478 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +++ + +H+++I+  L   + +  KL+  Y   +++  AR +FDEIP+ N+     +  +
Sbjct: 55  IRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRS 114

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G++ E V VF  M    ++ + +  P VLKAC     I  G KIH    K    + 
Sbjct: 115 YVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSST 174

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV + L+ MY KCG + +A+ V DEM  +D+V+ N++V GY Q     +AL +  E+ +
Sbjct: 175 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMES 234

Query: 274 PRVKPNVVTWNTLISGFSKSG-DQVM-VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
            ++  +  T  +L+   S +  + VM V  +F  M  K +    VSW  +I   + N   
Sbjct: 235 VKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSL----VSWNVMIGVYMKNAMP 290

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            EA + +  M + GF P + +I+S+LPAC   + +  GK+IHG      +  +L + +AL
Sbjct: 291 VEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENAL 350

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAIELFNQMEERKKL- 448
           +DMYAKCG + +AR +F+ M  R+ V+W +MI  +G +  G CD A+ LF+++++   + 
Sbjct: 351 IDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRG-CD-AVALFSKLQDSGLVP 408

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++F   L AC H GL+E G+  F +M + YKI PR EH ACMVDLLGRAG++ EAY  
Sbjct: 409 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRF 468

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I+ MS EP+  VWGALLGAC+ H + ++  +AA  L +L PE +   +LL+++YA AG
Sbjct: 469 IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 174/391 (44%), Gaps = 70/391 (17%)

Query: 169 EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228
           E+  +  ++ +F++  VL       DI T   +HS ++      ++ +   L+  Y+   
Sbjct: 32  ELDQKSPQETVFLLGQVLDT---YPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLK 88

Query: 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288
            V  A+KVFDE+ E++++ +N M+  YV  G   E + +   +    V+P+  T+  ++ 
Sbjct: 89  DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLK 148

Query: 289 GFSKSGDQV-------------MVSKLF------------------QLMRAKGVEPDVVS 317
             S SG  V             + S LF                  +L+  +    DVVS
Sbjct: 149 ACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS 208

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W S++ G   N   D+A +  +EM S      + T++S+LPA ++               
Sbjct: 209 WNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT------------- 255

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
               E  ++V+                  +F KM +++ V+WN MI     +    EA+E
Sbjct: 256 ---TENVMYVKD-----------------MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295

Query: 438 LFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           L+++ME +  + D +S T+VL AC     + LG+++   ++ K K++P       ++D+ 
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK-KLIPNLLLENALIDMY 354

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            + G L +A ++ + M +  D+  W A++ A
Sbjct: 355 AKCGCLEKARDVFENMKSR-DVVSWTAMISA 384



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 119/275 (43%), Gaps = 17/275 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +H  +    L     +   LI  Y +C  +  AR +F+ +   ++  W A+  
Sbjct: 324 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY   G   +AV +F ++   GL  +     + L AC H   +  G     L+  H   T
Sbjct: 384 AYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443

Query: 213 DAFV-VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                ++ ++D+  + G V++A +   +M +E +     A++     R  +   + L+  
Sbjct: 444 PRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGAC--RVHSDTDIGLLAA 501

Query: 271 IGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
               ++ P    +  L+S  ++K+G    V+ +  +M++KG++ +  +    ++ ++H F
Sbjct: 502 DKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTF 561

Query: 330 C--------NDEAFDTF----KEMLSQGFCPTSAT 352
                    +DE +       K+M   G+ P S +
Sbjct: 562 LVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSES 596


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 281/511 (54%), Gaps = 41/511 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +  G  +H   +  G      +A  LI  Y     + +AR+LFDE+P  ++  W A+ 
Sbjct: 164 RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMI 223

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             Y + G  +EA+T+       GL+  +   + S+L AC    D   G  IHS  +KH  
Sbjct: 224 SGYCQSGNAKEALTL-----SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 278

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++ FV + LID+Y++ GS++  +KVFD M  +D+++ N+++  Y        A+ L +E
Sbjct: 279 ESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQE 338

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGD---------------------------QVMVSKLF 303
           +   R++P+ +T  +L S  S+ G+                            VM +KL 
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLG 398

Query: 304 QLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSI 356
            +  A+ V       DV+SW ++ISG   N    EA + +  M  +G        T  S+
Sbjct: 399 LVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSV 458

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPAC+ A  +R+G ++HG  +  G+  D+ V ++L DMY KCG + +A +LF ++   N+
Sbjct: 459 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNS 518

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V WN++I     HG+ ++A+ LF +M +E  K DH++F  +L+AC H GLV+ G+  F M
Sbjct: 519 VPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEM 578

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQ  Y I P  +HY CMVDL GRAG+L  A   IK+M  +PD  +WGALL AC+ HGN++
Sbjct: 579 MQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVD 638

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L +IA++HL E+EPE    ++LL+++YA+AG
Sbjct: 639 LGKIASEHLFEVEPEHVGYHVLLSNMYASAG 669



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 236/494 (47%), Gaps = 59/494 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQS K LHA+L+VS   +   I+ KL+  Y    N+  AR  FD I   +++ W  +   
Sbjct: 67  LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 154 YARRGYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y R GY  E +  F   M   GL+ +    PSVLKAC +++D   G KIH L LK  F  
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMW 183

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D +V +SLI +Y + G+V  A+ +FDEM  +D+ + NAM+SGY Q G A EAL L + + 
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR 243

Query: 273 TPRVKPNVVTWNTLISGFSKSGD------------------QVMVS-------------- 300
                 + VT  +L+S  +++GD                  ++ VS              
Sbjct: 244 A----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLK 299

Query: 301 ---KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K+F  M  +    D++SW S+I     N     A   F+EM      P   T+ S+ 
Sbjct: 300 DCQKVFDRMYVR----DLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLA 355

Query: 358 PACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
              +    +R  + + G  +  G    D+ + +A+V MYAK G +  AR +F+ +  ++ 
Sbjct: 356 SILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDV 415

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK---KLDHLSFTAVLTACCHVGLVELGQRLF 473
           ++WN++I G A +G+  EAIE++N MEE       +  ++ +VL AC   G +  G +L 
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLH 475

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKN 530
             +  K  +         + D+ G+ GRL +A   +  I  +++ P    W  L+     
Sbjct: 476 GRLL-KNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVP----WNTLIACHGF 530

Query: 531 HGNIELAEIAAKHL 544
           HG+ E A +  K +
Sbjct: 531 HGHGEKAVMLFKEM 544



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 176/418 (42%), Gaps = 90/418 (21%)

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
           + +++ + + +H+ ++  +   +  + + L+++Y   G+V  A+  FD +  +D+ A N 
Sbjct: 63  YCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNL 122

Query: 251 MVSGYVQRGLATE-----ALNLVEEIGTP--RVKPNVVT--------------------- 282
           M+SGY + G ++E     +L ++     P  R  P+V+                      
Sbjct: 123 MISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFM 182

Query: 283 WN-----TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
           W+     +LI  + + G  V    LF  M  +    D+ SW ++ISG   +    EA   
Sbjct: 183 WDVYVAASLIHLYCRYGAVVNARILFDEMPTR----DMGSWNAMISGYCQSGNAKEAL-- 236

Query: 338 FKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
               LS G     S T+ S+L AC  A +  RG  IH  +I  G+E +L V + L+D+YA
Sbjct: 237 ---TLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYA 293

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSF-- 453
           + G + + + +FD+M  R+ ++WNS+I     +     AI LF +M   R + D L+   
Sbjct: 294 EFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLIS 353

Query: 454 ----------------------------------TAVLTACCHVGLVELGQRLFNMMQEK 479
                                              AV+     +GLV+  + +FN +  K
Sbjct: 354 LASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNK 413

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-----PDLFVWGALLGACKNHG 532
             I   T     ++    + G  +EA EM   M  E      +   W ++L AC   G
Sbjct: 414 DVISWNT-----IISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAG 466



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           N++  K +H   +V     ++ + + LV++Y   G ++ AR  FD +  R+   WN MI 
Sbjct: 66  NLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMIS 125

Query: 425 GCANHGYCDEAIELFN--QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           G    GY  E I  F+   +    + D+ +F +VL AC +   V  G ++ + +  K+  
Sbjct: 126 GYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKI-HCLALKFGF 181

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           M      A ++ L  R G +  A  +   M T  D+  W A++      GN + A
Sbjct: 182 MWDVYVAASLIHLYCRYGAVVNARILFDEMPTR-DMGSWNAMISGYCQSGNAKEA 235


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 176/483 (36%), Positives = 275/483 (56%), Gaps = 21/483 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML--------FDEIPKTNI 144
           +L   K  HA ++ +G  + + IA  L+  Y    N+   R L        FD + K N+
Sbjct: 46  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYA---NVSTNRYLSFESSLRVFDFVRKPNV 102

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W  +           +A+ +++EM +   + N +  P+VLKAC     +  G ++H+ 
Sbjct: 103 FLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAH 162

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATE 263
           ++KH  G D  ++SS I MY+  G + +A+++ D+   E D V  NAM+ GY++ G    
Sbjct: 163 LVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEA 222

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           A  L E  G P  +  + TWN +ISGFS+ G   +  + F  M+    E D +SW+++I 
Sbjct: 223 ARELFE--GMPD-RSMISTWNAMISGFSRCGMVEVAREFFDEMK----ERDEISWSAMID 275

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G +   C  EA + F +M  +   P    + S+L ACA+   + +G+ IH  A    ++ 
Sbjct: 276 GYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQL 335

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           D  + ++LVDMYAKCG I  A  +F+KMS +   +WN+MI G A HG  ++AI+LF++M+
Sbjct: 336 DGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD 395

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
                + ++F  VL AC H GLV+ G  +FN M+++Y + P+ EHY C+VDLLGRAG L 
Sbjct: 396 INP--NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLT 453

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA +++ ++ TEP   VWGALLGAC+ HGN+EL E   K L ELEP+++    LL+++YA
Sbjct: 454 EAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYA 513

Query: 564 NAG 566
            AG
Sbjct: 514 KAG 516


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 173/497 (34%), Positives = 277/497 (55%), Gaps = 34/497 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLI-TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           +HAQLI + L   T  A++L+ +  ++  N+++A ++F +I + N      +   Y    
Sbjct: 30  IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
             + A+  + EM  +GL  + +  P VLKACG +  +  G  +    +K  FG D FVV+
Sbjct: 90  TPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVN 149

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-------- 270
            LI MY +CG    A+ VFD   EKD+V+ N+M+ GYV  G    A N+ +E        
Sbjct: 150 GLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVS 209

Query: 271 --------------IGTPRV------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
                         +   RV        ++V+WN++I G++K G+  +  ++F  M    
Sbjct: 210 WSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKM---- 265

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           ++ +V+SW+ +I G   +  + EA + F++ML QG  P   ++   + AC+    + +G+
Sbjct: 266 LQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGR 325

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            IH       +  D+ V++ALVDMY KCG   EAR +F+ M ERN V+WN MI G   +G
Sbjct: 326 WIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNG 385

Query: 431 YCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
           +  EA+E F QME ER  +D L F  VL AC H  LV  G  +FN M+  Y++ P+ EHY
Sbjct: 386 FGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHY 445

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
            C+VDLLGRAG+L +   +I++M  +P+  +WG+LL AC+ H N+ LAEI  + L+EL+ 
Sbjct: 446 GCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKA 505

Query: 550 ESAANNMLLTDLYANAG 566
           + +   +L++++YA+ G
Sbjct: 506 DDSGVYVLMSNIYADVG 522



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 173/425 (40%), Gaps = 50/425 (11%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  G ++  + +  G      +   LI+ Y  C     AR +FD   + ++  W ++ G
Sbjct: 125 GLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLG 184

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G  + A  +F EM  + +     +I    K  G ++         + V   S  T
Sbjct: 185 GYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVN--------RARVFFDSMPT 236

Query: 213 -DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D    +S+ID Y+K G +E A+++FD+M++K++++ + M+ GY Q   + EALNL  ++
Sbjct: 237 RDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQM 296

Query: 272 GTPRVKP-----------------------------------NVVTWNTLISGFSKSGDQ 296
               +KP                                   ++V    L+  + K G +
Sbjct: 297 LCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSR 356

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F  M     E +VVSW  +I GL  N    EA + F +M  +           +
Sbjct: 357 DEARRIFNSMP----ERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGV 412

Query: 357 LPACASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER- 414
           L AC+ A  +  G  I +    V  +E  L     LVD+  + G + + + +   M  + 
Sbjct: 413 LMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKP 472

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
           N   W S++  C  H     A  +  ++ E K  D   +  +      VG+ E   R+  
Sbjct: 473 NAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRK 532

Query: 475 MMQEK 479
           +M+E+
Sbjct: 533 LMKER 537


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 277/507 (54%), Gaps = 40/507 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H QLI +  A      T ++  Y +C+ I  A  +FD +P+ ++  W  +   
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +++ G+ ++A+ +   M  +G + +   + +VL A   +  +  G+ IH   ++  F   
Sbjct: 223 FSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + ++L DMYSKCGSVE A+ +FD M +K +V+ N+M+ GYVQ G   +A+ + E++  
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 274 PRVKPNVVT-----------------------------------WNTLISGFSKSGDQVM 298
             + P  VT                                    N+LIS +SK     +
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            S +F  +  +      VSW ++I G   N    EA + F EM S G  P S T+ S++P
Sbjct: 403 ASDIFNNLNGR----THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIP 458

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  +  R  K IHG  I   ++ ++ V +ALVDMY+KCG I  AR LFD +S+R+ +T
Sbjct: 459 ALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT 518

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G   HG    A++LF++M++   + + +++ +V++AC H GLV+ G R F  M+
Sbjct: 519 WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMK 578

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y + P  +HY  MVDLLGRAGR+ EA++ I+ M   P + V+GA  GACK H NIE+ 
Sbjct: 579 QDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVG 638

Query: 538 EIAAKHLSELEPESAANNMLLTDLYAN 564
           E AAK L EL P+    ++LL ++YA+
Sbjct: 639 EKAAKKLFELNPDEGGYHVLLANIYAS 665



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 160/328 (48%), Gaps = 10/328 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H  +    L     +   LI+ Y++C+ +  A  +F+ +       W A+   
Sbjct: 365 LERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILG 424

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G   EA+  F EM   G+K + F + SV+ A   LS     + IH L+++     +
Sbjct: 425 YAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKN 484

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMYSKCG++  A+K+FD + ++ ++  NAM+ GY   GL   AL+L +++  
Sbjct: 485 IFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK 544

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCND 332
             V+PN +T+ ++IS  S SG      + F+ M+   G+EP +  + +++  L       
Sbjct: 545 GAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIK 604

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSAL 391
           EA+D  + M      P      +   AC    N+  G++       +   EG  HV   L
Sbjct: 605 EAWDFIENM---PISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHV--LL 659

Query: 392 VDMYA---KCGFISEARTLFDKMSERNT 416
            ++YA   K   ++E R   +K   + T
Sbjct: 660 ANIYASTSKWSKVAEVRKTMEKKGLKKT 687



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 153/318 (48%), Gaps = 35/318 (11%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +L+ C  + ++    +I  LV+K+    +    + L+ ++SK GS+ +A +VF+ + +K 
Sbjct: 55  LLELCTSMKEL---HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI----------------- 287
               + M+ GY +      AL  +  +    VKP V  +  L+                 
Sbjct: 112 DALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHG 171

Query: 288 ---------SGFSKSGDQVMVSKLFQL-----MRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                    + F+ +G   M +K  Q+     M  +  E D+VSW ++I+G   N    +
Sbjct: 172 QLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKK 231

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A +    M  +G  P S T+ ++LPA A    +  GK IHG AI  G    +++ +AL D
Sbjct: 232 ALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALAD 291

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           MY+KCG +  AR +FD M ++  V+WNSM+ G   +G  ++AI +F +M EE      ++
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 453 FTAVLTACCHVGLVELGQ 470
               L AC  +G +E G+
Sbjct: 352 IMEALHACADLGDLERGK 369



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 101/188 (53%), Gaps = 5/188 (2%)

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           L+S FSK G     +++F+ +  K    D + + +++ G   N   + A      M    
Sbjct: 87  LVSLFSKYGSINEAARVFEPIDDK---LDAL-YHTMLKGYAKNSSLETALAFLCRMRYDD 142

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P     + +L  C   A+++RGKEIHG  I      ++   + +V+MYAKC  I +A 
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAY 202

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVG 464
            +FD+M ER+ V+WN++I G + +G+  +A+EL  +M+ E ++ D ++   VL A   VG
Sbjct: 203 KMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 465 LVELGQRL 472
           L+ +G+ +
Sbjct: 263 LLMVGKSI 270


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 173/478 (36%), Positives = 277/478 (57%), Gaps = 11/478 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +++ + +H+++I+  L   + +  KL+  Y   +++  AR +FDEIP+ N+     +  +
Sbjct: 55  IRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRS 114

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G++ E V VF  M    ++ + +  P VLKAC     I  G KIH    K    + 
Sbjct: 115 YVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSST 174

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV + L+ MY KCG + +A+ V DEM  +D+V+ N++V GY Q     +AL +  E+ +
Sbjct: 175 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMES 234

Query: 274 PRVKPNVVTWNTLISGFSKSG-DQVM-VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
            ++  +  T  +L+   S +  + VM V  +F  M  K +    VSW  +I   + N   
Sbjct: 235 VKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSL----VSWNVMIGVYMKNAMP 290

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            EA + +  M + GF P + +I+S+LPAC   + +  GK+IHG      +  +L + +AL
Sbjct: 291 VEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENAL 350

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAIELFNQMEERKKL- 448
           +DMYAKCG + +AR +F+ M  R+ V+W +MI  +G +  G CD A+ LF+++++   + 
Sbjct: 351 IDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRG-CD-AVALFSKLQDSGLVP 408

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++F   L AC H GL+E G+  F +M + YKI PR EH ACMVDLLGRAG++ EAY  
Sbjct: 409 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRF 468

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I+ MS EP+  VWGALLGAC+ H + ++  +AA  L +L PE +   +LL+++YA AG
Sbjct: 469 IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 172/391 (43%), Gaps = 70/391 (17%)

Query: 169 EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228
           E+  +  ++ +F++  VL       DI T   +HS ++      ++ +   L+  Y+   
Sbjct: 32  ELDQKSPQETVFLLGQVLDT---YPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLK 88

Query: 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288
            V  A+KVFDE+ E++++ +N M+  YV  G   E + +   +    V+P+  T+  ++ 
Sbjct: 89  DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLK 148

Query: 289 GFSKSGDQV-------------MVSKLF------------------QLMRAKGVEPDVVS 317
             S SG  V             + S LF                  +L+  +    DVVS
Sbjct: 149 ACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS 208

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W S++ G   N   D+A +  +EM S      + T++S+LPA ++               
Sbjct: 209 WNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV--------- 259

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
                           MY K         +F KM +++ V+WN MI     +    EA+E
Sbjct: 260 ----------------MYVK--------DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295

Query: 438 LFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           L+++ME +  + D +S T+VL AC     + LG+++   ++ K K++P       ++D+ 
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK-KLIPNLLLENALIDMY 354

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            + G L +A ++ + M +  D+  W A++ A
Sbjct: 355 AKCGCLEKARDVFENMKSR-DVVSWTAMISA 384



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 156/392 (39%), Gaps = 42/392 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +H  +    L     +   LI  Y +C  +  AR +F+ +   ++  W A+  
Sbjct: 324 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY   G   +AV +F ++   GL  +     + L AC H   +  G     L+  H   T
Sbjct: 384 AYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443

Query: 213 DAFV-VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                ++ ++D+  + G V++A +   +M +E +     A++     R  +   + L+  
Sbjct: 444 PRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGAC--RVHSDTDIGLLAA 501

Query: 271 IGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
               ++ P    +  L+S  ++K+G    V+ +  +M++KG++ +  +    ++ ++H F
Sbjct: 502 DKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTF 561

Query: 330 C--------NDEAFDTF----KEMLSQGFCPTSATISSILPACASAANMRRGKEIH---- 373
                    +DE +       K+M   G+ P S +        A        KE H    
Sbjct: 562 LVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSES--------ALHDVEEEDKETHLAVH 613

Query: 374 --GCAIVMGV------EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
               AIV  +      E D +    +      CG    A  L  +++ R  +  ++  F 
Sbjct: 614 SEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFH 673

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457
               G C  A EL ++  ER     L  T VL
Sbjct: 674 VFRFGVCSCASELRDRESER-----LEITVVL 700



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 4/169 (2%)

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           ++R  + +H   I+  +  +  +   L+  YA    ++ AR +FD++ ERN +  N MI 
Sbjct: 54  DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113

Query: 425 GCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
              N+G+  E +++F  M     + DH +F  VL AC   G + +G+++      K  + 
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSAT-KVGLS 172

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL-LGACKNH 531
                   +V + G+ G L+EA  ++  MS   D+  W +L +G  +N 
Sbjct: 173 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLVVGYAQNQ 220


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 173/497 (34%), Positives = 277/497 (55%), Gaps = 34/497 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLI-TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           +HAQLI + L   T  A++L+ +  ++  N+++A ++F +I + N      +   Y    
Sbjct: 30  IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
             + A+  + EM  +GL  + +  P VLKACG +  +  G  +    +K  FG D FVV+
Sbjct: 90  TPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVN 149

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-------- 270
            LI MY +CG    A+ VFD   EKD+V+ N+M+ GYV  G    A N+ +E        
Sbjct: 150 GLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVS 209

Query: 271 --------------IGTPRV------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
                         +   RV        ++V+WN++I G++K G+  +  ++F  M    
Sbjct: 210 WSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKM---- 265

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           ++ +V+SW+ +I G   +  + EA + F++ML QG  P   ++   + AC+    + +G+
Sbjct: 266 LQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGR 325

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            IH       +  D+ V++ALVDMY KCG   EAR +F+ M ERN V+WN MI G   +G
Sbjct: 326 WIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNG 385

Query: 431 YCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
           +  EA+E F QME ER  +D L F  VL AC H  LV  G  +FN M+  Y++ P+ EHY
Sbjct: 386 FGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHY 445

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
            C+VDLLGRAG+L +   +I++M  +P+  +WG+LL AC+ H N+ LAEI  + L+EL+ 
Sbjct: 446 GCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKA 505

Query: 550 ESAANNMLLTDLYANAG 566
           + +   +L++++YA+ G
Sbjct: 506 DDSGVYVLMSNIYADVG 522



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 174/421 (41%), Gaps = 42/421 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  G ++  + +  G      +   LI+ Y  C     AR +FD   + ++  W ++ G
Sbjct: 125 GLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLG 184

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G  + A  +F EM  + +     +I    K  G ++         + V   S  T
Sbjct: 185 GYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVN--------RARVFFDSMPT 236

Query: 213 -DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D    +S+ID Y+K G +E A+++FB+M++K++++ + M+ GY     + EALNL  ++
Sbjct: 237 RDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQM 296

Query: 272 GTPRVKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV- 311
               +KP+ V+    +S  S+ G                   D V+ + L  +    G  
Sbjct: 297 LCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSX 356

Query: 312 -----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                      E +VVSW  +I GL  N    EA + F +M  +           +L AC
Sbjct: 357 DEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMAC 416

Query: 361 ASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVT 418
           + A  +  G  I +    V  +E  L     LVD+  + G + + + +   M  + N   
Sbjct: 417 SHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAAL 476

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           W S++  C  H     A  +  ++ E K  D   +  +      VG+ E   R+  +M+E
Sbjct: 477 WGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKE 536

Query: 479 K 479
           +
Sbjct: 537 R 537


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 180/507 (35%), Positives = 276/507 (54%), Gaps = 49/507 (9%)

Query: 68  PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
           PI+    H  P++Y+   +   R   ++ G+  HAQ+++ GL     +A K++  Y    
Sbjct: 69  PILQHFPH--PSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSG 126

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA---VTVFHEMHIQGLKQNIFVIPS 184
           ++  A ++FD I   +   + ++  AY R G        +  +  MH  GL  + F +P 
Sbjct: 127 DLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPF 186

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VLK+C  LS +  G  +H   L+     D +V +SLIDMY KCG +  A+K+FD+M+ +D
Sbjct: 187 VLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRD 246

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +                                    +WN LI+G+ K G+  +   LF+
Sbjct: 247 MA-----------------------------------SWNALIAGYMKEGEIGVAEDLFE 271

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACAS 362
            M  +    ++VSWT++ISG   N   ++A   F EML  G    P   TI S+LPACA 
Sbjct: 272 RMEHR----NIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ 327

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWN 420
           +A + RG+ IH  A  +G+  +  V++AL  MYAKC  + EAR  FD +++  +N + WN
Sbjct: 328 SAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWN 387

Query: 421 SMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI   A+HG   EA+ +F N +    + D ++F  +L+ C H GL++ G   FN M   
Sbjct: 388 TMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTI 447

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           + + PR EHYAC+VDLLGRAGRL EA E+I  M  +    VWGALL AC++H N+E+AE+
Sbjct: 448 HSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAEL 507

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA+ L  LEP+++ N +LL++LYA AG
Sbjct: 508 AARRLFVLEPDNSGNYVLLSNLYAEAG 534



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 145/364 (39%), Gaps = 34/364 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT--NIHRWIAL 150
           AL+ G+ +H      GL   + + T L   Y +C ++  AR  FD I +   N+  W  +
Sbjct: 330 ALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTM 389

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHS 209
             AYA  G   EAV++F  M   G++ +      +L  C H   I  G    + +   HS
Sbjct: 390 ITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHS 449

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
                   + ++D+  + G + +AK++  +M     +     V G +     +     + 
Sbjct: 450 VEPRVEHYACVVDLLGRAGRLVEAKELISQMP----MQAGPSVWGALLAACRSHRNLEIA 505

Query: 270 EIGTPRV---KPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISG 324
           E+   R+   +P+      L+S  ++++G    V KL  L++ +G++     SW   I+G
Sbjct: 506 ELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIE-ING 564

Query: 325 LVHNFCN-DEAFDTFKEMLS-----------QGFCPTSATISSILPACASAANMRRGKEI 372
             H F   D++    KE+              G+ P ++ +   +       N+    E 
Sbjct: 565 KSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSE- 623

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAK----CGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
              AI  G+   L+ R  +V    K    CG    A     K+ ER  +  +   F C  
Sbjct: 624 -KLAIAFGL---LNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFK 679

Query: 429 HGYC 432
            G C
Sbjct: 680 DGSC 683


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 171/506 (33%), Positives = 275/506 (54%), Gaps = 40/506 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH   +  GL     +A  L++ Y +C+ +     LF  +P+ ++  W  +     +
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  +A+ +F +M   G++ +   + S+L A   L+    G+++H  ++++    D F+
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           VS+L+D+Y KC +V  A+ V+D     D+V  + M+SGYV  G++ EA+ +   +    +
Sbjct: 386 VSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGI 445

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
           +PN V                                     + L+  ++K G   +   
Sbjct: 446 RPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHY 505

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  + AK    D V+W S+IS    N   +EA + F+EM  +G   ++ TISS+L ACA
Sbjct: 506 IFSKISAK----DEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACA 561

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S   +  GKEIHG  I   +  DL   SAL+DMY KCG +  A  +F+ M E+N V+WNS
Sbjct: 562 SLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNS 621

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I     +G   E++ L   M+E   K DH++F A+++AC H G V+ G RLF  M E+Y
Sbjct: 622 IIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEY 681

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           +I PR EH+ACMVDL  RAG+L +A E+I  M  +PD  +WGALL AC+ H N+ELAEIA
Sbjct: 682 QIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIA 741

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           ++ L +L+P ++   +L++++ A AG
Sbjct: 742 SQELFKLDPHNSGYYVLMSNINAVAG 767



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 247/488 (50%), Gaps = 38/488 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+++H      GL     + + LI  Y     +  AR +FD + + +   W  +  
Sbjct: 161 AIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMD 220

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G    AV +F +M   G + N   +   L      SD+  G ++H+L +K+   +
Sbjct: 221 GYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLES 280

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++L+ MY+KC  ++   K+F  M   D+V  N M+SG VQ G   +AL L  ++ 
Sbjct: 281 EVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQ 340

Query: 273 TPRVKPNVVTWNTL------ISGFSKSG-------------DQVMVSKLFQL-MRAKGVE 312
              ++P+ VT  +L      ++GF++               D  +VS L  +  + + V 
Sbjct: 341 KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVR 400

Query: 313 P-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                       DVV  +++ISG V N  + EA   F+ +L QG  P +  I+S+LPACA
Sbjct: 401 MAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S A M+ G+E+H  A+    EG  +V SAL+DMYAKCG +  +  +F K+S ++ VTWNS
Sbjct: 461 SMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNS 520

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI   A +G  +EA+ LF +M  E  K  +++ ++VL+AC  +  +  G+ +  ++    
Sbjct: 521 MISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVV---I 577

Query: 481 KIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           K   R + +A   ++D+ G+ G L  A+ + ++M  E +   W +++ +   +G ++ + 
Sbjct: 578 KGPIRADLFAESALIDMYGKCGNLEWAHRVFESM-PEKNEVSWNSIIASYGAYGLVKESV 636

Query: 539 IAAKHLSE 546
              +H+ E
Sbjct: 637 SLLRHMQE 644



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 222/483 (45%), Gaps = 42/483 (8%)

Query: 94  LQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH---RWIA 149
           L  G  +H + + +GL A  T + T+L+  Y   +    A  +F  +P+        W  
Sbjct: 55  LSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNW 114

Query: 150 LTGAYARRGYHQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           L       G ++ A+  + +M  H      +    P V+K+C  L  I  G  +H     
Sbjct: 115 LIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTART 174

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                D FV S+LI MY+  G +  A++VFD M E+D V  N M+ GYV+ G  + A+ L
Sbjct: 175 LGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVEL 234

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGD------------------QVMVSKLFQLMRAK 309
             ++     +PN  T    +S  +   D                  +V V+     M AK
Sbjct: 235 FGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAK 294

Query: 310 -----------GVEP--DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                      G+ P  D+V+W  +ISG V N   D+A   F +M   G  P S T+ S+
Sbjct: 295 CKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSL 354

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPA        +GKE+HG  +   V  D+ + SALVD+Y KC  +  A++++D     + 
Sbjct: 355 LPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V  ++MI G   +G   EA+++F   +E+  + + ++  +VL AC  +  ++LGQ L + 
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSY 474

Query: 476 -MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            ++  Y+   R    + ++D+  + GRL  ++ +   +S + D   W +++ +   +G  
Sbjct: 475 ALKNAYE--GRCYVESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISSFAQNGEP 531

Query: 535 ELA 537
           E A
Sbjct: 532 EEA 534



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 138/269 (51%), Gaps = 4/269 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G+ LH+  + +       + + L+  Y +C  +  +  +F +I   +   W ++  
Sbjct: 464 AMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMIS 523

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           ++A+ G  +EA+ +F EM ++G+K +   I SVL AC  L  I  G++IH +V+K     
Sbjct: 524 SFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRA 583

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  S+LIDMY KCG++E A +VF+ M EK+ V+ N++++ Y   GL  E+++L+  + 
Sbjct: 584 DLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQ 643

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               K + VT+  L+S  + +G    V +  +L R    E  +       + +V  +   
Sbjct: 644 EEGFKADHVTFLALVSACAHAGQ---VQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRA 700

Query: 333 EAFDTFKEML-SQGFCPTSATISSILPAC 360
              D   E++    F P +    ++L AC
Sbjct: 701 GKLDKAMELIVDMPFKPDAGIWGALLHAC 729



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 9/190 (4%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           ++L  C S +++  G ++HG A+  G+   D  +++ LV MY       +A  +F  +  
Sbjct: 44  AVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103

Query: 414 RN---TVTWNSMIFGCANHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVE 467
                 + WN +I G    G    A+  + +M         D  +F  V+ +C  +G + 
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           LG RL +       +       + ++ +    G L +A ++   M+ E D  +W  ++  
Sbjct: 164 LG-RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMA-ERDCVLWNVMMDG 221

Query: 528 CKNHGNIELA 537
               G++  A
Sbjct: 222 YVKAGSVSSA 231


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/506 (32%), Positives = 279/506 (55%), Gaps = 40/506 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--EIPKTNIHRWIALT 151
           +Q+G+++H  ++ +G      + T L+  Y +C+ +  A  LF   E  + N   W A+ 
Sbjct: 178 IQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMV 237

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ G   +AV  F  MH QG++ N +  P++L AC  +     GE++H  ++K  FG
Sbjct: 238 TGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFG 297

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++ +V S+L+DMY+KCG ++ AK + + M + D+V+ N+++ G+V+ GL  EAL L + +
Sbjct: 298 SNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNM 357

Query: 272 GTPRVKPNVVTW---------------------------------NTLISGFSKSGDQVM 298
               +K +  T+                                 N L+  ++K+GD   
Sbjct: 358 HGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDC 417

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              +F+ M    +E DV+SWTS+++G   N  ++E+   F +M   G  P    ++SIL 
Sbjct: 418 AYTVFEKM----LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILS 473

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA    +  GK++H   I  G+     V ++LV MYAKCG + +A  +F  M  ++ +T
Sbjct: 474 ACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVIT 533

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W ++I G A +G    +++ ++ M     + D ++F  +L AC H GLV+ G++ F  M 
Sbjct: 534 WTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMN 593

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y I P  EHYACM+DL GR+G+L EA +++  M  +PD  VW +LL AC+ H N+ELA
Sbjct: 594 KVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELA 653

Query: 538 EIAAKHLSELEPESAANNMLLTDLYA 563
           E AA +L ELEP +A   ++L+++Y+
Sbjct: 654 ERAATNLFELEPMNAMPYVMLSNMYS 679



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 237/500 (47%), Gaps = 45/500 (9%)

Query: 72  RSFHLSPAAYSERIEIYIRDRAL----QSGKILHAQLIVSGLARLTQIA-TKLITFYTEC 126
           RS H + AA  E   IY  ++ L    +SG++  A+ +   + +  + +   +I+ Y   
Sbjct: 52  RSIHTTTAASYE--SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNV 109

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
             +  AR LFD     +   W ++   Y + G   EA  +F  M ++G K + F + SVL
Sbjct: 110 GRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVL 169

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD--EMVEKD 244
           + C  L  I TGE IH  V+K+ F  + FVV+ L+DMY+KC  V +A+ +F   E   K+
Sbjct: 170 RVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKN 229

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS-----GDQV-- 297
            V   AMV+GY Q G   +A+     +    V+ N  T+ T+++  S       G+QV  
Sbjct: 230 HVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHG 289

Query: 298 -------------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDE 333
                              M +K   L  AK +     + DVVSW S++ G V +   +E
Sbjct: 290 FIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEE 349

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   FK M  +       T  S+L  C   +     K +HG  I  G E    V +ALVD
Sbjct: 350 ALRLFKNMHGRNMKIDDYTFPSVLNCCVVGS--INPKSVHGLIIKTGFENYKLVSNALVD 407

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
           MYAK G +  A T+F+KM E++ ++W S++ G A +   +E++++F  M       D   
Sbjct: 408 MYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFI 467

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
             ++L+AC  + L+E G+++ ++   K  +      Y  +V +  + G L +A  +  +M
Sbjct: 468 VASILSACAELTLLEFGKQV-HLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSM 526

Query: 513 STEPDLFVWGALLGACKNHG 532
             + D+  W A++     +G
Sbjct: 527 QVK-DVITWTAIIVGYAQNG 545


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 274/511 (53%), Gaps = 39/511 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L+ GK +H   +  G+     +AT +++ Y +C  +  A+  F  +   ++  W A  
Sbjct: 342 RDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFL 401

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A  + GY  EA+++F EM  +GLK +  ++ S++ AC  +S    G+ +H  V+K   G
Sbjct: 402 SALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMG 461

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  V ++L+ MY++C S   A  +F+ M  KD+VA N +++G+ + G    AL +   +
Sbjct: 462 SDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRL 521

Query: 272 GTPRVKPNVVTWNTLISG-----------------------------------FSKSGDQ 296
               V+P+  T  +L+S                                    ++K G  
Sbjct: 522 QLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSL 581

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                LF L   K V+ D VSW  +I+G +HN C +EA  TF +M  +   P   T  +I
Sbjct: 582 CTAENLFHL--NKHVK-DEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTI 638

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPA +  + +R     H C I MG      + ++L+DMYAK G +S +   F +M  + T
Sbjct: 639 LPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGT 698

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           ++WN+M+ G A HG  + A+ LF+ M+E    +D +S+ +VL+AC H GL++ G+ +F  
Sbjct: 699 ISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQS 758

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M EK+ + P  EHYACMVDLLG AG   E   +I  M TEPD  VWGALLGACK H N++
Sbjct: 759 MTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVK 818

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L EIA  HL +LEP +A + ++L+D+YA  G
Sbjct: 819 LGEIALHHLLKLEPRNAVHYIVLSDIYAQCG 849



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 217/482 (45%), Gaps = 56/482 (11%)

Query: 131 HARMLFDE-------IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIP 183
           HAR++  +       I   ++  W +L  AY+R    QEA+  +  M   GL+ + +   
Sbjct: 72  HARLIVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFT 131

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
            VLKAC    D   G  IH  +       D F+ + L+DMY K G ++ A+KVFD+M  K
Sbjct: 132 FVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGK 191

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPR-VKPNVVTW------------------- 283
           D+ + NAM+SG  Q     EAL + + +     V+P+ V+                    
Sbjct: 192 DVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSI 251

Query: 284 --------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                         N+LI  +SK G+  +  ++F  M  K    D +SW ++++G VH+ 
Sbjct: 252 HGYVVRRCVFGVVSNSLIDMYSKCGEVKLAHQIFDQMWVK----DDISWATMMAGYVHHG 307

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           C  E      EM  +       ++ + + A     ++ +GKE+H  A+ +G+  D+ V +
Sbjct: 308 CYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVAT 367

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKL 448
            +V MYAKCG + +A+  F  +  R+ V W++ +      GY  EA+ +F +M+ E  K 
Sbjct: 368 PIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKP 427

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D    +++++AC  +    LG ++ +    K  +         +V +  R      A  +
Sbjct: 428 DKTILSSLVSACAEISSSRLG-KMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTL 486

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELA-EIAAK-HLSELEPESA------ANNMLLTD 560
              M  + D+  W  L+      G+  LA E+  +  LS ++P+S       +   LL D
Sbjct: 487 FNRMHYK-DVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDD 545

Query: 561 LY 562
           LY
Sbjct: 546 LY 547



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 226/486 (46%), Gaps = 59/486 (12%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI-Q 173
           I T L+  Y +  ++ +AR +FD++P  ++  W A+    ++     EA+ +F  M + +
Sbjct: 164 IGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEE 223

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEK 232
           G++ +   I ++  A   L D+ + + IH  V++   FG    V +SLIDMYSKCG V+ 
Sbjct: 224 GVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGV---VSNSLIDMYSKCGEVKL 280

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------------- 279
           A ++FD+M  KD ++   M++GYV  G   E L L++E+    +K N             
Sbjct: 281 AHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATE 340

Query: 280 ----------------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                                 +V    ++S ++K G+     + F  +  +    D+V 
Sbjct: 341 TRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGR----DLVV 396

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W++ +S LV      EA   F+EM  +G  P    +SS++ ACA  ++ R GK +H   I
Sbjct: 397 WSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVI 456

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
              +  D+ V + LV MY +C     A TLF++M  ++ V WN++I G    G    A+E
Sbjct: 457 KADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALE 516

Query: 438 LFNQME-ERKKLDHLSFTAVLTACC-----HVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           +F +++    + D  +  ++L+AC      ++G+   G  + N ++ +  +         
Sbjct: 517 MFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVK------VA 570

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           ++D+  + G L  A  +        D   W  ++    ++G    A  A    ++++ ES
Sbjct: 571 LIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNG---CANEAISTFNQMKLES 627

Query: 552 AANNML 557
              N++
Sbjct: 628 VRPNLV 633



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 150/330 (45%), Gaps = 28/330 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF-------DEIPKTNIHRWIA 149
           G   H  +I +G+     +   LI  Y +C ++  A  LF       DE+       W  
Sbjct: 549 GICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVS------WNV 602

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y   G   EA++ F++M ++ ++ N+    ++L A  +LS +      H+ +++  
Sbjct: 603 MIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMG 662

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F +   + +SLIDMY+K G +  ++K F EM  K  ++ NAM+SGY   G    AL L  
Sbjct: 663 FISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFS 722

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHN 328
            +    V  + V++ +++S    +G       +FQ M  K  +EP +  +  ++  L   
Sbjct: 723 LMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCA 782

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
              DE      +M ++   P +    ++L AC   +N++ G+      I +     L  R
Sbjct: 783 GLFDEVLCLIDKMPTE---PDAQVWGALLGACKMHSNVKLGE------IALHHLLKLEPR 833

Query: 389 SA-----LVDMYAKCGFISEARTLFDKMSE 413
           +A     L D+YA+CG   +AR     M++
Sbjct: 834 NAVHYIVLSDIYAQCGRWIDARRTRSNMTD 863


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 272/506 (53%), Gaps = 40/506 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G  LH+ L  +G++    +   L+  Y +C ++  A ++F+   +TN+  W  +  A
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + +     ++  +F +M   G++ N F  P +L+ C    +I  GE+IHSL +K  F +D
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V   LIDMYSK G +EKA++V + + EKD+V+  +M++GYVQ     +AL   +E+  
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
             + P                                   +V  WN L++ +++ G    
Sbjct: 440 CGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIRE 499

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
               F+ +  K    D ++W  ++SG   +  ++EA   F  M   G      T  S L 
Sbjct: 500 AFSSFEEIEHK----DEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALS 555

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ A +++GK+IH   I  G   +  V +AL+ +Y KCG   +A+  F +MSERN V+
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS 615

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I  C+ HG   EA++LF+QM +E  K + ++F  VL AC HVGLVE G   F  M 
Sbjct: 616 WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 675

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++Y I PR +HYAC++D+ GRAG+L  A + I+ M    D  VW  LL ACK H NIE+ 
Sbjct: 676 DEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVG 735

Query: 538 EIAAKHLSELEPESAANNMLLTDLYA 563
           E AAKHL ELEP  +A+ +LL++ YA
Sbjct: 736 EFAAKHLLELEPHDSASYVLLSNAYA 761



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 233/469 (49%), Gaps = 36/469 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+++HAQ    G      +   +IT Y  C +   A  +F ++P  +   +  L   +A+
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+ + A+ +F EM   GL  +   I S+L AC  L D+  G ++HS + K    +D  +
Sbjct: 222 CGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
             SL+D+Y KCG VE A  +F+     ++V  N M+  + Q     ++  L  ++    +
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           +PN  T+  ++   + +     G+Q+                     M SK   L +A+ 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR 401

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     E DVVSWTS+I+G V + C  +A   FKEM   G  P +  ++S +  CA    
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           MR+G +IH    V G  GD+ + +ALV++YA+CG I EA + F+++  ++ +TWN ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIM 483
            A  G  +EA+++F +M++   K +  +F + L+A  ++  ++ G+++   +++  +   
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF- 580

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             TE    ++ L G+ G   +A      MS E +   W  ++ +C  HG
Sbjct: 581 -ETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHG 627



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 230/501 (45%), Gaps = 59/501 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+ +  GL +   +   LI  Y++   +  AR +F+E+   +   W+A+   YA+ G 
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA+ ++ +MH  G+    +V+ SVL +C        G  IH+   KH F ++ FV ++
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           +I +Y +CGS   A++VF +M  +D V  N ++SG+ Q G    AL + EE+    + P+
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND------- 332
            VT ++L++  +  GD    ++L   +   G+  D +   S++   V   C D       
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVK--CGDVETALVI 301

Query: 333 --------------------------EAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                                     ++F+ F +M + G  P   T   IL  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G++IH  ++  G E D++V   L+DMY+K G++ +AR + + + E++ V+W SMI G 
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 427 ANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
             H  C +A+  F +M++     D++   + ++ C  +          N M++  +I  R
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI----------NAMRQGLQIHAR 471

Query: 486 ---------TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
                       +  +V+L  R GR+ EA+   + +  + D   W  L+      G   L
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLVSGFAQSG---L 527

Query: 537 AEIAAKHLSELEPESAANNML 557
            E A K    ++     +N+ 
Sbjct: 528 HEEALKVFMRMDQSGVKHNVF 548



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 179/385 (46%), Gaps = 47/385 (12%)

Query: 186 LKAC-GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           L+AC G+        +IH+  +    G    V + LID+YSK G V  A++VF+E+  +D
Sbjct: 48  LRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARD 107

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEE------IGTPRVKPNVVT---------------- 282
            V+  AM+SGY Q GL  EAL L  +      + TP V  +V++                
Sbjct: 108 NVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHA 167

Query: 283 -------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                         N +I+ + + G   +  ++F  M  +    D V++ ++ISG     
Sbjct: 168 QGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR----DTVTFNTLISGHAQCG 223

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             + A + F+EM   G  P   TISS+L ACAS  ++++G ++H      G+  D  +  
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG 283

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           +L+D+Y KCG +  A  +F+     N V WN M+          ++ ELF QM+    + 
Sbjct: 284 SLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP 343

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAY 506
           +  ++  +L  C     ++LG+++ ++     K    ++ Y    ++D+  + G L +A 
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSL---SVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 507 EMIKTMSTEPDLFVWGALLGACKNH 531
            +++ M  E D+  W +++     H
Sbjct: 401 RVLE-MLKEKDVVSWTSMIAGYVQH 424



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G  +HA++ VSG +    I   L+  Y  C  I  A   F+EI   +   W  L  
Sbjct: 461 AMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVS 520

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK--HSF 210
            +A+ G H+EA+ VF  M   G+K N+F   S L A  +L++I  G++IH+ V+K  HSF
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF 580

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            T+  V ++LI +Y KCGS E AK  F EM E++ V+ N +++   Q G   EAL+L ++
Sbjct: 581 ETE--VGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQ 638

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNF 329
           +    +KPN VT+  +++  S  G        F+ M  + G+ P    +  VI      F
Sbjct: 639 MKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVID----IF 694

Query: 330 CNDEAFDTFKEMLSQGFCPTSATI-SSILPACASAANMRRGK 370
                 D  K+ + +      A +  ++L AC    N+  G+
Sbjct: 695 GRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGE 736


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 171/506 (33%), Positives = 275/506 (54%), Gaps = 40/506 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH   +  GL     +A  L++ Y +C+ +     LF  +P+ ++  W  +     +
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQ 325

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  +A+ +F +M   G++ +   + S+L A   L+    G+++H  ++++    D F+
Sbjct: 326 NGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFL 385

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           VS+L+D+Y KC +V  A+ V+D     D+V  + M+SGYV  G++ EA+ +   +    +
Sbjct: 386 VSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGI 445

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
           +PN V                                     + L+  ++K G   +   
Sbjct: 446 RPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHY 505

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  + AK    D V+W S+IS    N   +EA + F+EM  +G   ++ TISS+L ACA
Sbjct: 506 IFSKISAK----DEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACA 561

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S   +  GKEIHG  I   +  DL   SAL+DMY KCG +  A  +F+ M E+N V+WNS
Sbjct: 562 SLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNS 621

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I     +G   E++ L   M+E   K DH++F A+++AC H G V+ G RLF  M E+Y
Sbjct: 622 IIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEY 681

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           +I PR EH+ACMVDL  RAG+L +A E+I  M  +PD  +WGALL AC+ H N+ELAEIA
Sbjct: 682 QIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIA 741

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           ++ L +L+P ++   +L++++ A AG
Sbjct: 742 SQELFKLDPHNSGYYVLMSNINAVAG 767



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 247/488 (50%), Gaps = 38/488 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+++H      GL     + + LI  Y     +  AR +FD + + +   W  +  
Sbjct: 161 AIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMD 220

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G    AV +F +M   G + N   +   L      SD+  G ++H+L +K+   +
Sbjct: 221 GYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLES 280

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++L+ MY+KC  ++   K+F  M   D+V  N M+SG VQ G   +AL L  ++ 
Sbjct: 281 EVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQ 340

Query: 273 TPRVKPNVVTWNTL------ISGFSKSG-------------DQVMVSKLFQL-MRAKGVE 312
              ++P+ VT  +L      ++GF++               D  +VS L  +  + + V 
Sbjct: 341 KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVR 400

Query: 313 P-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                       DVV  +++ISG V N  + EA   F+ +L QG  P +  I+S+LPACA
Sbjct: 401 MAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S A M+ G+E+H  A+    EG  +V SAL+DMYAKCG +  +  +F K+S ++ VTWNS
Sbjct: 461 SMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNS 520

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI   A +G  +EA+ LF +M  E  K  +++ ++VL+AC  +  +  G+ +  ++    
Sbjct: 521 MISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVV---I 577

Query: 481 KIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           K   R + +A   ++D+ G+ G L  A+ + ++M  E +   W +++ +   +G ++ + 
Sbjct: 578 KGPIRADLFAESALIDMYGKCGNLEWAHRVFESM-PEKNEVSWNSIIASYGAYGLVKESV 636

Query: 539 IAAKHLSE 546
              +H+ E
Sbjct: 637 SLLRHMQE 644



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 222/483 (45%), Gaps = 42/483 (8%)

Query: 94  LQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH---RWIA 149
           L  G  +H + + +GL A  T + T+L+  Y   +    A  +F  +P+        W  
Sbjct: 55  LSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNW 114

Query: 150 LTGAYARRGYHQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           L       G ++ A+  + +M  H      +    P V+K+C  L  I  G  +H     
Sbjct: 115 LIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTART 174

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                D FV S+LI MY+  G +  A++VFD M E+D V  N M+ GYV+ G  + A+ L
Sbjct: 175 LGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVEL 234

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGD------------------QVMVSKLFQLMRAK 309
             ++     +PN  T    +S  +   D                  +V V+     M AK
Sbjct: 235 FGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAK 294

Query: 310 -----------GVEP--DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                      G+ P  D+V+W  +ISG V N   D+A   F +M   G  P S T+ S+
Sbjct: 295 CKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSL 354

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPA        +GKE+HG  +   V  D+ + SALVD+Y KC  +  A++++D     + 
Sbjct: 355 LPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V  ++MI G   +G   EA+++F   +E+  + + ++  +VL AC  +  ++LGQ L + 
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSY 474

Query: 476 -MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            ++  Y+   R    + ++D+  + GRL  ++ +   +S + D   W +++ +   +G  
Sbjct: 475 ALKNAYE--GRCYVESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISSFAQNGEP 531

Query: 535 ELA 537
           E A
Sbjct: 532 EEA 534



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 138/269 (51%), Gaps = 4/269 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G+ LH+  + +       + + L+  Y +C  +  +  +F +I   +   W ++  
Sbjct: 464 AMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMIS 523

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           ++A+ G  +EA+ +F EM ++G+K +   I SVL AC  L  I  G++IH +V+K     
Sbjct: 524 SFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRA 583

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  S+LIDMY KCG++E A +VF+ M EK+ V+ N++++ Y   GL  E+++L+  + 
Sbjct: 584 DLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQ 643

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               K + VT+  L+S  + +G    V +  +L R    E  +       + +V  +   
Sbjct: 644 EEGFKADHVTFLALVSACAHAGQ---VQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRA 700

Query: 333 EAFDTFKEML-SQGFCPTSATISSILPAC 360
              D   E++    F P +    ++L AC
Sbjct: 701 GKLDKAMELIVDMPFKPDAGIWGALLHAC 729



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 9/190 (4%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           ++L  C S +++  G ++HG A+  G+   D  +++ LV MY       +A  +F  +  
Sbjct: 44  AVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103

Query: 414 RN---TVTWNSMIFGCANHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVE 467
                 + WN +I G    G    A+  + +M         D  +F  V+ +C  +G + 
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           LG RL +       +       + ++ +    G L +A ++   M+ E D  +W  ++  
Sbjct: 164 LG-RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMA-ERDCVLWNVMMDG 221

Query: 528 CKNHGNIELA 537
               G++  A
Sbjct: 222 YVKAGSVSSA 231


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 272/506 (53%), Gaps = 40/506 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G  LH+ L  +G++    +   L+  Y +C ++  A ++F+   +TN+  W  +  A
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + +     ++  +F +M   G++ N F  P +L+ C    +I  GE+IHSL +K  F +D
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V   LIDMYSK G +EKA++V + + EKD+V+  +M++GYVQ     +AL   +E+  
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
             + P                                   +V  WN L++ +++ G    
Sbjct: 440 CGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIRE 499

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
               F+ +  K    D ++W  ++SG   +  ++EA   F  M   G      T  S L 
Sbjct: 500 AFSSFEEIEHK----DEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALS 555

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ A +++GK+IH   I  G   +  V +AL+ +Y KCG   +A+  F +MSERN V+
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS 615

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I  C+ HG   EA++LF+QM +E  K + ++F  VL AC HVGLVE G   F  M 
Sbjct: 616 WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 675

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++Y I PR +HYAC++D+ GRAG+L  A + I+ M    D  VW  LL ACK H NIE+ 
Sbjct: 676 DEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVG 735

Query: 538 EIAAKHLSELEPESAANNMLLTDLYA 563
           E AAKHL ELEP  +A+ +LL++ YA
Sbjct: 736 EFAAKHLLELEPHDSASYVLLSNAYA 761



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 233/469 (49%), Gaps = 36/469 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+++HAQ    G      +   +IT Y  C +   A  +F ++P  +   +  L   +A+
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+ + A+ +F EM   GL  +   I S+L AC  L D+  G ++HS + K    +D  +
Sbjct: 222 CGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
             SL+D+Y KCG VE A  +F+     ++V  N M+  + Q     ++  L  ++    +
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           +PN  T+  ++   + +     G+Q+                     M SK   L +A+ 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR 401

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     E DVVSWTS+I+G V + C  +A   FKEM   G  P +  ++S +  CA    
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           MR+G +IH    V G  GD+ + +ALV++YA+CG I EA + F+++  ++ +TWN ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSG 521

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIM 483
            A  G  +EA+++F +M++   K +  +F + L+A  ++  ++ G+++   +++  +   
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF- 580

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             TE    ++ L G+ G   +A      MS E +   W  ++ +C  HG
Sbjct: 581 -ETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHG 627



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 230/501 (45%), Gaps = 59/501 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+ +  GL +   +   LI  Y++   +  AR +F+E+   +   W+A+   YA+ G 
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA+ ++ +MH  G+    +V+ SVL +C        G  IH+   KH F ++ FV ++
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           +I +Y +CGS   A++VF +M  +D V  N ++SG+ Q G    AL + EE+    + P+
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND------- 332
            VT ++L++  +  GD    ++L   +   G+  D +   S++   V   C D       
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVK--CGDVETALVI 301

Query: 333 --------------------------EAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                                     ++F+ F +M + G  P   T   IL  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G++IH  ++  G E D++V   L+DMY+K G++ +AR + + + E++ V+W SMI G 
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 427 ANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
             H  C +A+  F +M++     D++   + ++ C  +          N M++  +I  R
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI----------NAMRQGLQIHAR 471

Query: 486 ---------TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
                       +  +V+L  R GR+ EA+   + +  + D   W  L+      G   L
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLVSGFAQSG---L 527

Query: 537 AEIAAKHLSELEPESAANNML 557
            E A K    ++     +N+ 
Sbjct: 528 HEEALKVFMRMDQSGVKHNVF 548



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 179/385 (46%), Gaps = 47/385 (12%)

Query: 186 LKAC-GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           L+AC G+        +IH+  +    G    V + LID+YSK G V  A++VF+E+  +D
Sbjct: 48  LRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARD 107

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEE------IGTPRVKPNVVT---------------- 282
            V+  AM+SGY Q GL  EAL L  +      + TP V  +V++                
Sbjct: 108 NVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHA 167

Query: 283 -------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                         N +I+ + + G   +  ++F  M  +    D V++ ++ISG     
Sbjct: 168 QGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR----DTVTFNTLISGHAQCG 223

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             + A + F+EM   G  P   TISS+L ACAS  ++++G ++H      G+  D  +  
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG 283

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           +L+D+Y KCG +  A  +F+     N V WN M+          ++ ELF QM+    + 
Sbjct: 284 SLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP 343

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAY 506
           +  ++  +L  C     ++LG+++ ++     K    ++ Y    ++D+  + G L +A 
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSL---SVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 507 EMIKTMSTEPDLFVWGALLGACKNH 531
            +++ M  E D+  W +++     H
Sbjct: 401 RVLE-MLKEKDVVSWTSMIAGYVQH 424



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G  +HA++ VSG +    I   L+  Y  C  I  A   F+EI   +   W  L  
Sbjct: 461 AMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVS 520

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK--HSF 210
            +A+ G H+EA+ VF  M   G+K N+F   S L A  +L++I  G++IH+ V+K  HSF
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF 580

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            T+  V ++LI +Y KCGS E AK  F EM E++ V+ N +++   Q G   EAL+L ++
Sbjct: 581 ETE--VGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQ 638

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNF 329
           +    +KPN VT+  +++  S  G        F+ M  + G+ P    +  VI      F
Sbjct: 639 MKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVID----IF 694

Query: 330 CNDEAFDTFKEMLSQGFCPTSATI-SSILPACASAANMRRGK 370
                 D  K+ + +      A +  ++L AC    N+  G+
Sbjct: 695 GRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGE 736


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/504 (35%), Positives = 275/504 (54%), Gaps = 37/504 (7%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYT----ECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           K+    L+++G A++      L  F        + +  AR LFDE+   ++  W ++   
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISG 225

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G  ++ + +F +M + G+  ++  + SV+  C +   +  G  +H   +K SFG +
Sbjct: 226 YVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKE 285

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + + L+DMYSK G++  A +VF+ M E+ +V+  +M++GY + GL+  ++ L  E+  
Sbjct: 286 LTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK 345

Query: 274 PRVKPNVVTWNTLI-----SGFSKSGDQV-------------MVSKLFQLMRAKGVE--- 312
             + P++ T  T++     +G  ++G  V              VS     M AK      
Sbjct: 346 EGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGD 405

Query: 313 ----------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                      D+VSW ++I G   N   +EA + F EM      P S T++ ILPACAS
Sbjct: 406 AHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK-PNSITMACILPACAS 464

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A + RG+EIHG  +  G   D HV +ALVDMY KCG +  AR LFD + E++ V+W  M
Sbjct: 465 LAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM 524

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G   HGY  EAI  FN+M     + D +SF ++L AC H GL++ G   FNMM+    
Sbjct: 525 IAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCC 584

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P++EHYAC+VDLL RAG L++AY+ IK M  EPD  +WGALL  C+ + +++LAE  A
Sbjct: 585 IEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVA 644

Query: 542 KHLSELEPESAANNMLLTDLYANA 565
           +H+ ELEPE+    +LL ++YA A
Sbjct: 645 EHVFELEPENTGYYVLLANIYAEA 668



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 210/467 (44%), Gaps = 97/467 (20%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS-------------- 229
           SVL+ C  L  I  G +IHS++  +    D  + S L+ MY  CG               
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165

Query: 230 -----------------------------------VEKAKKVFDEMVEKDIVAMNAMVSG 254
                                              VE A+K+FDE+ ++D+++ N+M+SG
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISG 225

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG------------------------- 289
           YV  GL+ + L+L E++    +  ++ T  ++++G                         
Sbjct: 226 YVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKE 285

Query: 290 ----------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                     +SKSG+     ++F+ M     E  VVSWTS+I+G      +D +   F 
Sbjct: 286 LTLNNCLLDMYSKSGNLNSAIQVFETMG----ERSVVSWTSMIAGYAREGLSDMSVRLFH 341

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           EM  +G  P   TI++IL ACA    +  GK++H       ++ DL V +AL+DMYAKCG
Sbjct: 342 EMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCG 401

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459
            + +A ++F +M  ++ V+WN+MI G + +   +EA+ LF +M+   K + ++   +L A
Sbjct: 402 SMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPA 461

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           C  +  +E GQ +   +      + R  H A  +VD+  + G L  A  ++  M  E DL
Sbjct: 462 CASLAALERGQEIHGHILRNGFSLDR--HVANALVDMYLKCGALGLA-RLLFDMIPEKDL 518

Query: 519 FVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYA 563
             W  ++     HG    A  A   +  S +EP+  +    ++ LYA
Sbjct: 519 VSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS---FISILYA 562



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 171/371 (46%), Gaps = 50/371 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ LH   I +   +   +   L+  Y++  N++ A  +F+ + + ++  W ++   YAR
Sbjct: 270 GRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAR 329

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G    +V +FHEM  +G+  +IF I ++L AC     +  G+ +H+ + ++   +D FV
Sbjct: 330 EGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFV 389

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY+KCGS+  A  VF EM  KDIV+ N M+ GY +  L  EALNL  E+     
Sbjct: 390 SNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNS 448

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
           KPN +T                                    N L+  + K G   +   
Sbjct: 449 KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARL 508

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF ++     E D+VSWT +I+G   +    EA   F EM + G  P   +  SIL AC+
Sbjct: 509 LFDMI----PEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS 564

Query: 362 SAANMRRGKEI-----HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            +  +  G        + C I    E      + +VD+ A+ G +S+A      M  E +
Sbjct: 565 HSGLLDEGWGFFNMMRNNCCI----EPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPD 620

Query: 416 TVTWNSMIFGC 426
              W +++ GC
Sbjct: 621 ATIWGALLCGC 631



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 133/268 (49%), Gaps = 5/268 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++GK +H  +  + +     ++  L+  Y +C ++  A  +F E+   +I  W  + G 
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y++     EA+ +F EM     K N   +  +L AC  L+ +  G++IH  +L++ F  D
Sbjct: 428 YSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLD 486

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L+DMY KCG++  A+ +FD + EKD+V+   M++GY   G  +EA+    E+  
Sbjct: 487 RHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRN 546

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCND 332
             ++P+ V++ +++   S SG        F +MR    +EP    +  ++  L       
Sbjct: 547 SGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLS 606

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPAC 360
           +A+   K M  +   P +    ++L  C
Sbjct: 607 KAYKFIKMMPIE---PDATIWGALLCGC 631



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 13/249 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H  ++ +G +    +A  L+  Y +C  +  AR+LFD IP+ ++  W  +  
Sbjct: 467 ALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIA 526

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFG 211
            Y   GY  EA+  F+EM   G++ +     S+L AC H   +  G    +++  +    
Sbjct: 527 GYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 586

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
             +   + ++D+ ++ G++ KA K    M +E D     A++ G   Y    LA +    
Sbjct: 587 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEH 646

Query: 268 VEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
           V E+     +P    +  L++  ++++     V KL + +  +G+  +   SW   I G 
Sbjct: 647 VFEL-----EPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIE-IKGK 700

Query: 326 VHNFCNDEA 334
           VH F   ++
Sbjct: 701 VHIFVTGDS 709



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 114/280 (40%), Gaps = 55/280 (19%)

Query: 329 FCNDEAFDTFKEMLSQGFCPTSA--TISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
           FC         E+++Q   P     T  S+L  CA   +++ G+ IH       VE D  
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV 137

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-- 444
           + S LV MY  CG + E R +FDK++      WN ++ G A  G   E++ LF +M E  
Sbjct: 138 LGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELG 197

Query: 445 -------RKKLDHL------SFTAVLTACCHVGLVELGQRLFNMM--------------- 476
                  RK  D L      S+ ++++     GL E G  LF  M               
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 477 -----QEKYKIMPRTEH-YA-------------CMVDLLGRAGRLAEAYEMIKTMSTEPD 517
                     ++ R  H YA             C++D+  ++G L  A ++ +TM  E  
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERS 316

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           +  W +++      G   L++++ +   E+E E  + ++ 
Sbjct: 317 VVSWTSMIAGYAREG---LSDMSVRLFHEMEKEGISPDIF 353


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/507 (33%), Positives = 268/507 (52%), Gaps = 41/507 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH  ++VSGL     I   L++ Y++C     A  LF  + + +   W  +   Y +
Sbjct: 254 GVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQ 313

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  +E++  F+EM   G+  +     S+L +     ++    +IH  +++HS   D F+
Sbjct: 314 SGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFL 373

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+LID Y KC  V  A+K+F +    D+V   AM+SGY+  GL  +AL +   +   ++
Sbjct: 374 TSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKI 433

Query: 277 KPNVVTWNTL-----------------------------------ISGFSKSGDQVMVSK 301
            PN +T  ++                                   I  ++K G   +  +
Sbjct: 434 SPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYE 493

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  +  +    D+VSW S+I+    +     A D F++M   G C    +IS+ L ACA
Sbjct: 494 IFGRLSKR----DIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACA 549

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           +  +   GK IHG  I   +  D++  S L+DMYAKCG +  A  +FD M E+N V+WNS
Sbjct: 550 NLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNS 609

Query: 422 MIFGCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +I    NHG   +++ LF++M E+   + D ++F  +++ CCHVG V+ G R F  M + 
Sbjct: 610 IIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQD 669

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y I P+ EHYAC+VDL GRAGRL+EAYE +K+M   PD  VWG LLGA + H N+ELA++
Sbjct: 670 YGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKV 729

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           A+  L +L+P ++   +L+++ +AN G
Sbjct: 730 ASSRLMDLDPWNSGYYVLISNAHANTG 756



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 216/453 (47%), Gaps = 34/453 (7%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +A+ LI  Y E   I  A  LFD + + +   W  +   YA+ G     +  F  M +  
Sbjct: 171 VASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQ 230

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +  N      VL  C     I  G ++H LV+      +  + +SL+ MYSKCG  + A 
Sbjct: 231 ISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAI 290

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK-- 292
           K+F  M   D V  N M+SGYVQ GL  E+L    E+ +  V P+ +T+++L+   SK  
Sbjct: 291 KLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFE 350

Query: 293 -----------------SGDQVMVSKLFQ-LMRAKGV-----------EPDVVSWTSVIS 323
                            S D  + S L     + +GV             DVV +T++IS
Sbjct: 351 NLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMIS 410

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G +HN  N +A + F+ ++     P   T+ SILP       ++ G+E+HG  I  G + 
Sbjct: 411 GYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDN 470

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
             ++  A++DMYAKCG ++ A  +F ++S+R+ V+WNSMI  CA       AI++F QM 
Sbjct: 471 RCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMG 530

Query: 444 ERKK-LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
                 D +S +A L+AC ++     G+ +   M  K+ +       + ++D+  + G L
Sbjct: 531 VSGICFDCVSISAALSACANLPSESFGKAIHGFMI-KHSLALDVYSESTLIDMYAKCGNL 589

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             A  +  TM  E ++  W +++ A  NHG ++
Sbjct: 590 KAAMNVFDTMK-EKNIVSWNSIIAAYGNHGKLK 621



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 122/516 (23%), Positives = 239/516 (46%), Gaps = 49/516 (9%)

Query: 60  FIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRA----LQSGKILHAQLIVSGLARLTQI 115
           F+     +P+   S+         R+ + ++D +    L+ GK +HA +IV+ ++  +  
Sbjct: 10  FVPYKKSLPL-RNSYRFLEETLPRRLSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYT 68

Query: 116 ATKLITFYTECQNIHHARMLFDEIPK--TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
             +++  Y  C +  +   +F  +    ++I  W ++  ++ R G   +A+  + +M   
Sbjct: 69  DERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCF 128

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G+  ++   P ++KAC  L +    E +   V       + FV SSLI  Y + G ++ A
Sbjct: 129 GVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVA 188

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW---------- 283
            K+FD +++KD V  N M++GY + G +   +     +   ++ PN VT+          
Sbjct: 189 GKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASK 248

Query: 284 -------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                    N+L+S +SK G      KLF++M       D V+W
Sbjct: 249 LLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMS----RADTVTW 304

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
             +ISG V +   +E+   F EM+S G  P + T SS+LP+ +   N+   ++IH   + 
Sbjct: 305 NCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMR 364

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
             +  D+ + SAL+D Y KC  +S A+ +F + +  + V + +MI G  ++G   +A+E+
Sbjct: 365 HSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEM 424

Query: 439 FNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F  + + K   + ++  ++L     +  ++LG+ L   + +K     R      ++D+  
Sbjct: 425 FRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYA 483

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + GR+  AYE+   +S   D+  W +++  C    N
Sbjct: 484 KCGRMNLAYEIFGRLSKR-DIVSWNSMITRCAQSDN 518



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 136/280 (48%), Gaps = 5/280 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ LH  +I  G      I   +I  Y +C  ++ A  +F  + K +I  W ++  
Sbjct: 452 ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMIT 511

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+      A+ +F +M + G+  +   I + L AC +L     G+ IH  ++KHS   
Sbjct: 512 RCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLAL 571

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-I 271
           D +  S+LIDMY+KCG+++ A  VFD M EK+IV+ N++++ Y   G   ++L L  E +
Sbjct: 572 DVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMV 631

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFC 330
                +P+ +T+  +IS     GD     + F+ M +  G++P    +  V+        
Sbjct: 632 EKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGR 691

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
             EA++T K M    F P +    ++L A     N+   K
Sbjct: 692 LSEAYETVKSM---PFPPDAGVWGTLLGASRLHKNVELAK 728



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/392 (19%), Positives = 157/392 (40%), Gaps = 76/392 (19%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSG--------------------LARLTQI--------- 115
           I  Y++   ++   I   ++I SG                    L    QI         
Sbjct: 308 ISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSI 367

Query: 116 ------ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE 169
                  + LI  Y +C+ +  A+ +F +    ++  + A+   Y   G + +A+ +F  
Sbjct: 368 SLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRW 427

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           +    +  N   + S+L   G L  +  G ++H  ++K  F     +  ++IDMY+KCG 
Sbjct: 428 LVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 487

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV------------- 276
           +  A ++F  + ++DIV+ N+M++   Q    + A+++  ++G   +             
Sbjct: 488 MNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSA 547

Query: 277 ----------------------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
                                   +V + +TLI  ++K G+      +F  M+    E +
Sbjct: 548 CANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMK----EKN 603

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRG-KEI 372
           +VSW S+I+   ++    ++   F EM+ + G  P   T   I+  C    ++  G +  
Sbjct: 604 IVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFF 663

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
                  G++      + +VD++ + G +SEA
Sbjct: 664 RSMTQDYGIQPQQEHYACVVDLFGRAGRLSEA 695



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 49/318 (15%)

Query: 256 VQRGLATEALNLVEEI-GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM--RAKGVE 312
           +++G    A  +V  I G       ++    +   FS  G      K+F  +  R   + 
Sbjct: 47  LRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCG------KMFYRLDSRLSSIR 100

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P    W S+IS  V     ++A   + +ML  G  P  +T   ++ AC +  N +  + +
Sbjct: 101 P----WNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFL 156

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
                 +G++ +  V S+L+  Y + G I  A  LFD++ +++ V WN M+ G A  G  
Sbjct: 157 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGAS 216

Query: 433 DEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL------------------- 472
           D  I+ F+ M  ++   + ++F  VL+ C    L++LG +L                   
Sbjct: 217 DSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSL 276

Query: 473 ---------FNMMQEKYKIMPR--TEHYACMVDLLGRAGRLAEA----YEMIKTMSTEPD 517
                    F+   + +++M R  T  + CM+    ++G + E+    YEMI +    PD
Sbjct: 277 LSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISS-GVLPD 335

Query: 518 LFVWGALLGACKNHGNIE 535
              + +LL +     N+E
Sbjct: 336 AITFSSLLPSVSKFENLE 353


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/510 (35%), Positives = 276/510 (54%), Gaps = 41/510 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+ +HAQL   GLA  +  +T L   Y +C+    AR +FD +P  +   W A+   
Sbjct: 32  LATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAG 91

Query: 154 YARRGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           YAR G    A+     M  +  G + +   + SVL AC     +    ++H+  L+    
Sbjct: 92  YARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLD 151

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL---- 267
               V ++++D Y KCG+VE A+ VFD M  ++ V+ NAM+ GY   G ATEA+ L    
Sbjct: 152 ELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRM 211

Query: 268 ------------------VEEIG----TPRV---------KPNVVTWNTLISGFSKSGDQ 296
                               E+G      RV           NV   N LI+ ++K    
Sbjct: 212 VQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRA 271

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
            + +++F  +   G +   +SW ++I G   N C ++A   F  M  +   P S T+ S+
Sbjct: 272 DLAAQVFNEL---GNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSV 328

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           +PA A  ++  + + IHG +I   ++ D++V +AL+DMY+KCG +S AR LFD   +R+ 
Sbjct: 329 IPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHV 388

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNM 475
           +TWN+MI G  +HG+   A+ELF +M+    L +  +F +VL AC H GLV+ GQ+ F  
Sbjct: 389 ITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFAS 448

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M++ Y + P  EHY  MVDLLGRAG+L EA+  IK M  EP + V+GA+LGACK H N+E
Sbjct: 449 MKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVE 508

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANA 565
           LAE +A+ + EL PE    ++LL ++YANA
Sbjct: 509 LAEESAQIIFELGPEEGVYHVLLANIYANA 538



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 163/376 (43%), Gaps = 42/376 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL + + +HA  + +GL  L  ++T ++  Y +C  +  AR +FD +P  N   W A+ 
Sbjct: 133 RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMI 192

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA  G   EA+ +F  M  +G+      + + L+ACG L  +    ++H L+++    
Sbjct: 193 DGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLS 252

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI-VAMNAMVSGYVQRGLATEALNLVEE 270
           ++  V ++LI  Y+KC   + A +VF+E+  K   ++ NAM+ G+ Q     +A  L   
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFAR 312

Query: 271 IGTPRVKPNVVT------------------W-----------------NTLISGFSKSGD 295
           +    V+P+  T                  W                   LI  +SK G 
Sbjct: 313 MQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGR 372

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             +  +LF   R +     V++W ++I G   +     A + F+EM   G  P   T  S
Sbjct: 373 VSIARRLFDSARDR----HVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLS 428

Query: 356 ILPACASAANMRRGKEIHGC-AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-E 413
           +L AC+ A  +  G++         G+E  +     +VD+  + G + EA +    M  E
Sbjct: 429 VLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIE 488

Query: 414 RNTVTWNSMIFGCANH 429
                + +M+  C  H
Sbjct: 489 PGISVYGAMLGACKLH 504



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 27/406 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI--PKTNIHRWIALT 151
           L   + +H  L+  GL+    +   LIT Y +C+    A  +F+E+   KT I  W A+ 
Sbjct: 236 LDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS-WNAMI 294

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + +    ++A  +F  M ++ ++ + F + SV+ A   +SD      IH   ++H   
Sbjct: 295 LGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLD 354

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D +V+++LIDMYSKCG V  A+++FD   ++ ++  NAM+ GY   G    A+ L EE+
Sbjct: 355 QDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEM 414

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
                 PN  T+ ++++  S +G      K F  M+   G+EP +  + +++  L     
Sbjct: 415 KGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGK 474

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRS 389
            DEA+   K M  +   P  +   ++L AC    N+   +E       +G  EG  HV  
Sbjct: 475 LDEAWSFIKNMPIE---PGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHV-- 529

Query: 390 ALVDMYAKCGF---ISEARTLFDKMSERNTVTWN---------SMIFGCANHGYC-DEAI 436
            L ++YA       ++  RT  +K   + T  W+         +   G  NH +  D   
Sbjct: 530 LLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYA 589

Query: 437 ELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            L   +EE K + ++  T  +    H    ++  +L N   EK  I
Sbjct: 590 RLAKLIEEIKDMGYVPDTDSI----HDVEDDVKAQLLNTHSEKLAI 631



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 173/391 (44%), Gaps = 51/391 (13%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           ++LK C   +D+ TG  +H+ +      +++   ++L +MY KC     A++VFD M  +
Sbjct: 21  ALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSR 80

Query: 244 DIVAMNAMVSGYVQRGLATEALNLV-----EEIGTPRVKPNVVTW--------------- 283
           D VA NA+V+GY + GL + A+  V     EE G    +P+ VT                
Sbjct: 81  DRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGE---RPDSVTLVSVLPACADARALHA 137

Query: 284 --------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                                 ++  + K G       +F  M  +    + VSW ++I 
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR----NSVSWNAMID 193

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G   N    EA   F  M+ +G   T A++ + L AC     +   + +H   + +G+  
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSS 253

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNT-VTWNSMIFGCANHGYCDEAIELFNQM 442
           ++ V +AL+  YAKC     A  +F+++  + T ++WN+MI G   +   ++A  LF +M
Sbjct: 254 NVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARM 313

Query: 443 E-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           + E  + D  +  +V+ A   +    L  R  +    ++++         ++D+  + GR
Sbjct: 314 QLENVRPDSFTLVSVIPAVADIS-DPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGR 372

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           ++ A  +  + + +  +  W A++    +HG
Sbjct: 373 VSIARRLFDS-ARDRHVITWNAMIHGYGSHG 402



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T +++L  CA+ A++  G+ +H      G+  +    +AL +MY KC   ++AR +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM---EERKKLDHLSFTAVLTAC 460
           FD+M  R+ V WN+++ G A +G    A+E   +M   E  ++ D ++  +VL AC
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129


>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 867

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/426 (38%), Positives = 249/426 (58%), Gaps = 1/426 (0%)

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
           E  +  +  W  +    AR G  +EA+ V   M  QG+  +   + S+LK+  +   +G 
Sbjct: 280 EAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGH 339

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G ++H   L+H    DA+  ++L+DMY+KCG ++ A++VFD +  +++   N++V+G+  
Sbjct: 340 GTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHAN 399

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            G    AL LVE +   R+ PNV TWN LI+G++ +G       L + +++ GV P+VVS
Sbjct: 400 AGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVS 459

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WTS+ISG  +     ++F  F EM   G  P+  T+  +L ACA  A + +GKE+H  A+
Sbjct: 460 WTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFAL 519

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
               +G++ V +AL+DMYAK G ++ A+ +F ++  +N V  N+M+ G A HG   EA  
Sbjct: 520 RRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAA 579

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF+ M     K D ++FTA+LTAC  +GLV       + M+ KY + P  EH+ACMVDLL
Sbjct: 580 LFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLL 639

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
            R G L EA   I+    EP    WGALL  C  HGN++LAE AA+HL +LEP ++AN +
Sbjct: 640 ARRGYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANYL 699

Query: 557 LLTDLY 562
            +  LY
Sbjct: 700 AMMSLY 705



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 169/389 (43%), Gaps = 40/389 (10%)

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W       A  G    A+  F EM  +G+  + +     L ACG       G  +H+  L
Sbjct: 147 WNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAVHAHAL 206

Query: 207 KHSFGTDA--FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           +     DA   V   L  MY++   V  A  V        +VA NA+++  V+ GL  +A
Sbjct: 207 RVGL-VDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGLVDDA 265

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
           L L E     R+  +  T                         ++  EP + +W +V+SG
Sbjct: 266 LELAE-----RMARDAET-------------------------SEAAEPTLATWNTVLSG 295

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
              +  + EA    + ML QG  P +AT+SS+L + A++ ++  G E+H   +  G+  D
Sbjct: 296 CARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPD 355

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
            +  +ALVDMYAKCG +  A+ +FD +  RN  TWNS++ G AN G+ D A+EL   M +
Sbjct: 356 AYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFDRALELVEAM-K 414

Query: 445 RKKLDH--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           R ++D    ++  ++T     GL      L   ++    + P    +  ++      G  
Sbjct: 415 RHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSA-GVAPNVVSWTSLISGSCNGGDY 473

Query: 503 AEAYEMIKTMST---EPDLFVWGALLGAC 528
            +++     M     +P L     LL AC
Sbjct: 474 QDSFTFFSEMQQDGIQPSLVTMLVLLRAC 502



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 145/351 (41%), Gaps = 14/351 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G  +H   +  GL+      T L+  Y +C  +  A+ +FD +   N+  W +L  
Sbjct: 336 SLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVA 395

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A  G+   A+ +   M    +  N+     ++   G+  +  + + +  L    S G 
Sbjct: 396 GHANAGHFDRALELVEAMKRHRIDPNVTTWNGLIT--GYAMNGLSSQAMLLLRQIKSAGV 453

Query: 213 DAFVVS--SLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALN 266
              VVS  SLI      G  + +   F EM    ++  +V M  ++       L T+   
Sbjct: 454 APNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKE 513

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           L            VV    LI  ++K+G      ++F  ++ K    ++V   ++++GL 
Sbjct: 514 LHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGK----NLVCCNAMLTGLA 569

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDL 385
            +    EA   F +M   G  P   T +++L AC S   +    E +       GV    
Sbjct: 570 VHGQAHEAAALFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTA 629

Query: 386 HVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEA 435
              + +VD+ A+ G++ EA    ++  +E    +W +++ GCA HG  D A
Sbjct: 630 EHHACMVDLLARRGYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLA 680



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 14/263 (5%)

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D V W   ++ L      D A   F+EM ++G        +  L AC  A     G+ +H
Sbjct: 143 DAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAVH 202

Query: 374 GCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
             A+ +G V+    V   L  MYA+   ++ A T+  + +    V WN++I  C   G  
Sbjct: 203 AHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGLV 262

Query: 433 DEAIELFNQM------EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
           D+A+EL  +M       E  +    ++  VL+ C   G       +   M E+  I+P  
Sbjct: 263 DDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQ-GILPDA 321

Query: 487 EHYACMVDLLGRAGRLAEAYEM---IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
              + ++  +  +G L    E+          PD +   AL+      G +++A+   + 
Sbjct: 322 ATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQ---RV 378

Query: 544 LSELEPESAANNMLLTDLYANAG 566
              LE  + A    L   +ANAG
Sbjct: 379 FDGLEHRNLATWNSLVAGHANAG 401


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 274/476 (57%), Gaps = 1/476 (0%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
            A+  G+  H   +V GL     + + ++ FY +   I  A ++F  +   ++  W  + 
Sbjct: 270 EAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVV 329

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ G  ++A+ +   M  +GL+ +   + ++L       D+  G K H+  +K+ F 
Sbjct: 330 AGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFE 389

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D  V S +IDMY+KCG ++ A++VF  + +KDIV  N M++   ++GL+ EAL L  ++
Sbjct: 390 GDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQM 449

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
               V PNVV+WN+LI GF K+G       +F  M + GV P++++WT+++SGLV N   
Sbjct: 450 QLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFG 509

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
             A   F+EM   G  P S +I+S L  C S A ++ G+ IHG  +   +   +H+ +++
Sbjct: 510 SGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSI 569

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DH 450
           +DMYAKCG +  A+ +F   S +    +N+MI   A+HG   EA+ LF QME+   + DH
Sbjct: 570 MDMYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDH 629

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++ T+VL+AC H GL++ G ++F  M  + ++ P  EHY C+V LL   G+L EA   I 
Sbjct: 630 ITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTIL 689

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           TM + PD  + G+LL AC  + +IELA+  AK L +L+P+++ N + L+++YA  G
Sbjct: 690 TMPSHPDAHILGSLLTACGQNNDIELADYIAKWLLKLDPDNSGNYVALSNVYAAVG 745



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 232/478 (48%), Gaps = 38/478 (7%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQN 128
           S + H+ PA Y   ++  + +RAL     LHA +I  G   A    + +KL+  Y +C  
Sbjct: 44  SLNLHVGPAIYGTLLQGCVYERALPLALQLHADVIKRGPTFALNDFVISKLVILYAKCGA 103

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
              A  LF + P  N+  W A+ G + R G+ +EA+  + +M   GL  + FV+P+VLKA
Sbjct: 104 SEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKA 163

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTD--AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
           CG L  +  G+ +H+ V+K + G     +V +SL+DMY KCG+VE A KVFDEM E++ V
Sbjct: 164 CGVLKWVRFGKGVHAFVVK-TIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDV 222

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------NTLISGFSKSG---- 294
             N+MV  Y Q G+  EA+ +  E+    V+  +V          N+   G  + G    
Sbjct: 223 TWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLA 282

Query: 295 -------DQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAF 335
                  D V+ S +       G+              DVV+W  V++G       ++A 
Sbjct: 283 VVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKAL 342

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           +    M  +G      T+S++L   A   ++  G + H   +    EGD+ V S ++DMY
Sbjct: 343 EMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMY 402

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFT 454
           AKCG +  AR +F  + +++ V WN+M+  CA  G   EA++LF QM+ E    + +S+ 
Sbjct: 403 AKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWN 462

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           +++      G V   + +F  M     +MP    +  M+  L + G  + A  + + M
Sbjct: 463 SLIFGFFKNGQVAEARNMFAEMCSS-GVMPNLITWTTMMSGLVQNGFGSGAMMVFREM 519



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 224/459 (48%), Gaps = 18/459 (3%)

Query: 97  GKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           GK +HA ++ + GL     +AT L+  Y +C  +  A  +FDE+ + N   W ++   YA
Sbjct: 173 GKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYA 232

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G +QEA+ VF EM +QG++  +  +     AC +   +G G + H L +      D  
Sbjct: 233 QNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNV 292

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + SS+++ Y K G +E+A+ VF  M  KD+V  N +V+GY Q G+  +AL +   +    
Sbjct: 293 LGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEG 352

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
           ++ + VT + L++  + + D V+  K          E DVV    V SG++  +      
Sbjct: 353 LRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVV----VSSGIIDMYAKCGRM 408

Query: 336 DTFKEMLSQGFCPTSATI---SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           D  + + S   C     I   +++L ACA         ++     +  V  ++   ++L+
Sbjct: 409 DCARRVFS---CVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLI 465

Query: 393 DMYAKCGFISEARTLFDKMSER----NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
             + K G ++EAR +F +M       N +TW +M+ G   +G+   A+ +F +M++   +
Sbjct: 466 FGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIR 525

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            + +S T+ L+ C  + L++ G+ +   +  +  +         ++D+  + G L  A  
Sbjct: 526 PNSMSITSALSGCTSMALLKHGRAIHGYVMRR-DLSQSIHIITSIMDMYAKCGSLDGAKC 584

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           + K  ST+ +L+V+ A++ A  +HG    A +  K + +
Sbjct: 585 VFKMCSTK-ELYVYNAMISAYASHGQAREALVLFKQMEK 622



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 211/463 (45%), Gaps = 58/463 (12%)

Query: 140 PKTNIHRWIALT--GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
           P+T      +LT   +  + G  +EAV    +MH   L     +  ++L+ C +   +  
Sbjct: 10  PQTLTPNQFSLTHFSSLCKHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPL 69

Query: 198 GEKIHSLVLKH--SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             ++H+ V+K   +F  + FV+S L+ +Y+KCG+ E A ++F +    ++ +  A++  +
Sbjct: 70  ALQLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLH 129

Query: 256 VQRGLATEALN---LVEEIGTPR---VKPN------VVTW-------------------- 283
            + G   EAL     +++ G P    V PN      V+ W                    
Sbjct: 130 TRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKEC 189

Query: 284 ----NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                +L+  + K G      K+F  M     E + V+W S++     N  N EA   F+
Sbjct: 190 VYVATSLVDMYGKCGAVEDAGKVFDEMS----ERNDVTWNSMVVTYAQNGMNQEAIRVFR 245

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           EM  QG   T   +S    ACA++  +  G++ HG A+V G+E D  + S++++ Y K G
Sbjct: 246 EMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVG 305

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLT 458
            I EA  +F  M+ ++ VTWN ++ G A  G  ++A+E+   M EE  + D ++ +A+L 
Sbjct: 306 LIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLA 365

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEAYEMIKTMST 514
                  + LG     M    Y +    E      + ++D+  + GR+  A  +   +  
Sbjct: 366 VAADTRDLVLG-----MKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRK 420

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           + D+ +W  +L AC   G   L+  A K   +++ ES   N++
Sbjct: 421 K-DIVLWNTMLAACAEQG---LSGEALKLFFQMQLESVPPNVV 459


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 272/499 (54%), Gaps = 32/499 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LHA  +V G      +A+ L+  Y +   + +AR +FD++P  +   W  +     R
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              + ++V VF +M  QG++ +   + +VL A   + ++  G  I  L LK  F  D +V
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--IGTP 274
           ++ LI ++SKC  V+ A+ +F  + + D+V+ NA++SG+   G    A+    E  +   
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 275 RVKPNVVT-------------WNTLISGFS-KSGD----------QVMVSKLFQLMRAKG 310
           RV  + +                  I GF  KSG             + S+L ++  A+ 
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           +     E  V +W ++ISG   +   + A   F+EM++  F P   TI+SIL ACA    
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GK +H       +E +++V +AL+DMYAKCG ISEA  LFD  SE+NTVTWN+MIFG
Sbjct: 422 LSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFG 481

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              HGY DEA++LFN+M     +   ++F +VL AC H GLV  G  +F+ M  KY+I P
Sbjct: 482 YGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEP 541

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             EHYACMVD+LGRAG+L +A E I+ M  EP   VWG LLGAC  H +  LA +A++ L
Sbjct: 542 LAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERL 601

Query: 545 SELEPESAANNMLLTDLYA 563
            EL+P +    +LL+++Y+
Sbjct: 602 FELDPGNVGYYVLLSNIYS 620



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 214/471 (45%), Gaps = 51/471 (10%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           HAQLI +G        TKL     +     HAR LF  +PK +I  +  L   ++   + 
Sbjct: 28  HAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFS---FS 84

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS---DIGTGEKIHSLVLKHSFGTDAFVV 217
            +A ++    H   L +N  + P        +S   D   G  +H+  +   F ++ FV 
Sbjct: 85  PDASSISFYTH---LLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVA 141

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           S+L+D+Y K   V  A+KVFD+M ++D V  N M++G V+     +++ + +++    V+
Sbjct: 142 SALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVR 201

Query: 278 PNVVTWNT-----------------------------------LISGFSKSGDQVMVSKL 302
            +  T  T                                   LIS FSK  D      L
Sbjct: 202 LDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLL 261

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F ++R    +PD+VS+ ++ISG   N   + A   F+E+L  G   +S+T+  ++P  + 
Sbjct: 262 FGMIR----KPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSP 317

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             ++     I G  +  G      V +AL  +Y++   I  AR LFD+ SE+    WN+M
Sbjct: 318 FGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAM 377

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A  G  + AI LF +M   +   + ++ T++L+AC  +G +  G+ +  +++ K  
Sbjct: 378 ISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSK-N 436

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +         ++D+  + G ++EA ++   +++E +   W  ++     HG
Sbjct: 437 LEQNIYVSTALIDMYAKCGNISEASQLFD-LTSEKNTVTWNTMIFGYGLHG 486



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 48/274 (17%)

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           KP++  +N LI GFS S D   +S    L++   + PD  ++   IS             
Sbjct: 68  KPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAIS------------- 114

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
                                    ++ +   G  +H  A+V G + +L V SALVD+Y 
Sbjct: 115 -------------------------ASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYC 149

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTA 455
           K   ++ AR +FDKM +R+TV WN+MI G   +   D+++++F  M  +  +LD  +   
Sbjct: 150 KFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVAT 209

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMS 513
           VL A   +  V++G  +  +     K+    + Y    ++ +  +   +  A  ++  M 
Sbjct: 210 VLPAVAEMQEVKVGMGIQCL---ALKLGFHFDDYVLTGLISVFSKCEDVDTA-RLLFGMI 265

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
            +PDL  + AL+     +G     E A K+  EL
Sbjct: 266 RKPDLVSYNALISGFSCNGE---TECAVKYFREL 296



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           +++  F  +P   +  +    +  AL  GK +H  +    L +   ++T LI  Y +C N
Sbjct: 397 MMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGN 456

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I  A  LFD   + N   W  +   Y   GY  EA+ +F+EM   G + +     SVL A
Sbjct: 457 ISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYA 516

Query: 189 CGHLSDIGTGEKI-HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           C H   +  G++I H++V K+     A   + ++D+  + G +EKA +   +M
Sbjct: 517 CSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKM 569


>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 866

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/426 (38%), Positives = 249/426 (58%), Gaps = 1/426 (0%)

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
           E  +  +  W  +    AR G  +EA+ V   M  QG+  +   + S+LK+  +   +G 
Sbjct: 279 EAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGH 338

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G ++H   L+H    DA+  ++L+DMY+KCG ++ A++VFD +  +++   N++V+G+  
Sbjct: 339 GTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHAN 398

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            G    AL LVE +   R+ PNV TWN LI+G++ +G       L + +++ GV P+VVS
Sbjct: 399 AGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVS 458

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WTS+ISG  +     ++F  F EM   G  P+  T+  +L ACA  A + +GKE+H  A+
Sbjct: 459 WTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFAL 518

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
               +G++ V +AL+DMYAK G ++ A+ +F ++  +N V  N+M+ G A HG   EA  
Sbjct: 519 RRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAA 578

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF+ M     K D ++FTA+LTAC  +GLV       + M+ KY + P  EH+ACMVDLL
Sbjct: 579 LFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLL 638

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
            R G L EA   I+    EP    WGALL  C  HGN++LAE AA+HL +LEP ++AN +
Sbjct: 639 ARRGYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANYL 698

Query: 557 LLTDLY 562
            +  LY
Sbjct: 699 AMMSLY 704



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 169/389 (43%), Gaps = 40/389 (10%)

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W       A  G    A+  F EM  +G+  + +     L ACG       G  +H+  L
Sbjct: 146 WNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAVHAHAL 205

Query: 207 KHSFGTDA--FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           +     DA   V   L  MY++   V  A  V        +VA NA+++  V+ GL  +A
Sbjct: 206 RVGL-VDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGLVDDA 264

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
           L L E     R+  +  T                         ++  EP + +W +V+SG
Sbjct: 265 LELAE-----RMARDAET-------------------------SEAAEPTLATWNTVLSG 294

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
              +  + EA    + ML QG  P +AT+SS+L + A++ ++  G E+H   +  G+  D
Sbjct: 295 CARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPD 354

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
            +  +ALVDMYAKCG +  A+ +FD +  RN  TWNS++ G AN G+ D A+EL   M +
Sbjct: 355 AYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFDRALELVEAM-K 413

Query: 445 RKKLDH--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           R ++D    ++  ++T     GL      L   ++    + P    +  ++      G  
Sbjct: 414 RHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSA-GVAPNVVSWTSLISGSCNGGDY 472

Query: 503 AEAYEMIKTMST---EPDLFVWGALLGAC 528
            +++     M     +P L     LL AC
Sbjct: 473 QDSFTFFSEMQQDGIQPSLVTMLVLLRAC 501



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 146/351 (41%), Gaps = 14/351 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G  +H   +  GL+      T L+  Y +C  +  A+ +FD +   N+  W +L  
Sbjct: 335 SLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVA 394

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A  G+   A+ +   M    +  N+     ++   G+  +  + + +  L    S G 
Sbjct: 395 GHANAGHFDRALELVEAMKRHRIDPNVTTWNGLIT--GYAMNGLSSQAMLLLRQIKSAGV 452

Query: 213 DAFVVS--SLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALN 266
              VVS  SLI      G  + +   F EM    ++  +V M  ++       L T+   
Sbjct: 453 APNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKE 512

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           L            VV    LI  ++K+G      ++F  ++ K    ++V   ++++GL 
Sbjct: 513 LHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGK----NLVCCNAMLTGLA 568

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDL 385
            +    EA   F +M   G  P   T +++L AC S   +    E +       GV    
Sbjct: 569 VHGQAHEAAALFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTA 628

Query: 386 HVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEA 435
              + +VD+ A+ G++ EA T  ++  +E    +W +++ GCA HG  D A
Sbjct: 629 EHHACMVDLLARRGYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLA 679



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 14/263 (5%)

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D V W   ++ L      D A   F+EM ++G        +  L AC  A     G+ +H
Sbjct: 142 DAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAVH 201

Query: 374 GCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
             A+ +G V+    V   L  MYA+   ++ A T+  + +    V WN++I  C   G  
Sbjct: 202 AHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGLV 261

Query: 433 DEAIELFNQM------EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
           D+A+EL  +M       E  +    ++  VL+ C   G       +   M E+  I+P  
Sbjct: 262 DDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQ-GILPDA 320

Query: 487 EHYACMVDLLGRAGRLAEAYEM---IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
              + ++  +  +G L    E+          PD +   AL+      G +++A+   + 
Sbjct: 321 ATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQ---RV 377

Query: 544 LSELEPESAANNMLLTDLYANAG 566
              LE  + A    L   +ANAG
Sbjct: 378 FDGLEHRNLATWNSLVAGHANAG 400


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/535 (32%), Positives = 290/535 (54%), Gaps = 36/535 (6%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           M + S  +++    ++  +        L+ G   H+ +I   LA+   +   L+  Y +C
Sbjct: 417 MDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKC 476

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
             +  AR +F+ +   +   W  + G+Y +     EA  +F  M++ G+  +   + S L
Sbjct: 477 GALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTL 536

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
           KAC H+  +  G+++H L +K     D    SSLIDMYSKCG ++ A+KVF  + E  +V
Sbjct: 537 KACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVV 596

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS------------------ 288
           +MNA+++GY Q  L  EA+ L +E+ T  V P+ +T+ T++                   
Sbjct: 597 SMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQI 655

Query: 289 ---GFSKSGDQVMVSKLFQLMRAKGVE------------PDVVSWTSVISGLVHNFCNDE 333
              GFS  G+ + +S L   M ++G+               +V WT ++SG   N   +E
Sbjct: 656 TKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEE 715

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   +KEM   G  P  AT  ++L  C+  +++R G+ IH     +  + D    + L+D
Sbjct: 716 ALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLID 775

Query: 394 MYAKCGFISEARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
           MYAKCG +  +  +FD+M  R N V+WNS+I G A +GY ++A+++F+ M +   + D +
Sbjct: 776 MYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEI 835

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  VLTAC H G V  G+++F MM  +Y I  R +H ACMVDLLGR G L EA + I+ 
Sbjct: 836 TFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEA 895

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            + +PD  +W +LLGAC+ HG+    EI+A+ L ELEP++++  +LL+++YA+ G
Sbjct: 896 QNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQG 950



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 225/436 (51%), Gaps = 8/436 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H++ ++ G+    ++   ++  Y +C  + +A   FD + K ++  W ++  
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEK-DVTAWNSMLS 133

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y+  G   + +  F  +    +  N F    VL  C   +++  G +IH  ++K     
Sbjct: 134 MYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLER 193

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +++   +L+DMY+KC  +  A++VF+ +V+ + V    + SGYV+ GL  EA+ + E + 
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR 253

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               +P+ + + T+I+ + + G       LF  M +    PDVV+W  +ISG     C  
Sbjct: 254 DEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSS----PDVVAWNVMISGHGKRGCET 309

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            A + F  M       T +T+ S+L A    AN+  G  +H  AI +G+  +++V S+LV
Sbjct: 310 VAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLV 369

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
            MY+KC  +  A  +F+ + E+N V WN+MI G A++G   + +ELF  M+     +D  
Sbjct: 370 SMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDF 429

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +FT++L+ C     +E+G +  +++ +K K+         +VD+  + G L +A ++ + 
Sbjct: 430 TFTSLLSTCAASHDLEMGSQFHSIIIKK-KLAKNLFVGNALVDMYAKCGALEDARQIFER 488

Query: 512 MSTEPDLFVWGALLGA 527
           M  + D   W  ++G+
Sbjct: 489 M-CDRDNVTWNTIIGS 503



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 212/454 (46%), Gaps = 39/454 (8%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I  Y     +  AR+LF E+   ++  W  +   + +RG    A+  F  M    +K  
Sbjct: 267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST 326

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              + SVL A G ++++  G  +H+  +K    ++ +V SSL+ MYSKC  +E A KVF+
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            + EK+ V  NAM+ GY   G + + + L  ++ +     +  T+ +L+S  + S D  M
Sbjct: 387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEM 446

Query: 299 VSKLFQLMRAKGV-------------------------------EPDVVSWTSVISGLVH 327
            S+   ++  K +                               + D V+W ++I   V 
Sbjct: 447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQ 506

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           +    EAFD FK M   G     A ++S L AC     + +GK++H  ++  G++ DLH 
Sbjct: 507 DENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHT 566

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
            S+L+DMY+KCG I +AR +F  + E + V+ N++I G + +   +EA+ LF +M  R  
Sbjct: 567 GSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGV 625

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG---RAGRLA 503
               ++F  ++ AC     + LG + F+    K       E+    + LLG    +  + 
Sbjct: 626 NPSEITFATIVEACHKPESLTLGTQ-FHGQITKRGFSSEGEYLG--ISLLGMYMNSRGMT 682

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           EA  +   +S+   + +W  ++     +G  E A
Sbjct: 683 EACALFSELSSPKSIVLWTGMMSGHSQNGFYEEA 716



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 230/487 (47%), Gaps = 54/487 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G ++HA+ I  GLA    + + L++ Y++C+ +  A  +F+ + + N   W A+   
Sbjct: 343 LDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRG 402

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA  G   + + +F +M   G   + F   S+L  C    D+  G + HS+++K     +
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKN 462

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMY+KCG++E A+++F+ M ++D V  N ++  YVQ    +EA +L + +  
Sbjct: 463 LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNL 522

Query: 274 PRV-----------------------------------KPNVVTWNTLISGFSKSGDQVM 298
             +                                     ++ T ++LI  +SK G    
Sbjct: 523 CGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKD 582

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             K+F  +     E  VVS  ++I+G   N   +EA   F+EML++G  P+  T ++I+ 
Sbjct: 583 ARKVFSSLP----EWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVE 637

Query: 359 ACASAANMRRGKEIHGCAIVMGV--EGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RN 415
           AC    ++  G + HG     G   EG+ ++  +L+ MY     ++EA  LF ++S  ++
Sbjct: 638 ACHKPESLTLGTQFHGQITKRGFSSEGE-YLGISLLGMYMNSRGMTEACALFSELSSPKS 696

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQR--- 471
            V W  M+ G + +G+ +EA++ + +M     L D  +F  VL  C  +  +  G+    
Sbjct: 697 IVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHS 756

Query: 472 -LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
            +F++  +  ++   T     ++D+  + G +  + ++   M    ++  W +L+     
Sbjct: 757 LIFHLAHDLDELTSNT-----LIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAK 811

Query: 531 HGNIELA 537
           +G  E A
Sbjct: 812 NGYAEDA 818



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 140/311 (45%), Gaps = 29/311 (9%)

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGF 290
           K++KVFDEM ++  +A+          G A  + +L+  I +  R+       N ++  +
Sbjct: 60  KSRKVFDEMPQRLALALRI--------GKAVHSKSLILGIDSEGRLG------NAIVDLY 105

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +K        K F  +     E DV +W S++S         +   +F  +      P  
Sbjct: 106 AKCAQVSYAEKQFDFL-----EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNK 160

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
            T S +L  CA   N+  G++IH   I MG+E + +   ALVDMYAKC  IS+AR +F+ 
Sbjct: 161 FTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEW 220

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELG 469
           + + NTV W  +  G    G  +EA+ +F +M +E  + DHL+F  V+     +G ++  
Sbjct: 221 IVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDA 280

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM---STEPDLFVWGALLG 526
           + LF  M       P    +  M+   G+ G    A E    M   S +      G++L 
Sbjct: 281 RLLFGEMSS-----PDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLS 335

Query: 527 ACKNHGNIELA 537
           A     N++L 
Sbjct: 336 AIGIVANLDLG 346


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 177/478 (37%), Positives = 275/478 (57%), Gaps = 14/478 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLI--TFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
            +S K LHA LIV+GL   T +  +LI  +       + +A  LF +I + +I  W  + 
Sbjct: 26  FRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMI 85

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
              A+      AV+++ +M  +G++ + F    VLKAC  LS +  G  IH  VLK  F 
Sbjct: 86  RGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQ 145

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++ FV ++LI  ++ CG +  A+ +FD   ++++V  +A+ +GY +RG    A  L +E+
Sbjct: 146 SNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEM 205

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  ++V+WN +I+ ++K G+     KLF  +  K    DVV+W ++I+G V +  N
Sbjct: 206 PMK----DLVSWNVMITAYAKHGEMEKARKLFDEVPKK----DVVTWNAMIAGYVLSRLN 257

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV--RS 389
            EA + F  M   G  P   T+ SIL A A   ++  GK+IH     M   GDL V   +
Sbjct: 258 KEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCC-GDLSVLLSN 316

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           AL+DMYAKCG I  A  +F  M +++T +WNS+I G A HG+ +E+I LF +M   K K 
Sbjct: 317 ALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKP 376

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           + ++F AVL AC H G V  G+  FN+M+  +KI P  +HY CMVD+LGRAG L EA++ 
Sbjct: 377 NEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDF 436

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I TM  EP+  +W  LLGAC+ HG++EL   A + L ++  + + + +LL+++YA+ G
Sbjct: 437 IDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQG 494


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/505 (34%), Positives = 266/505 (52%), Gaps = 59/505 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH-RWIALTG 152
           L+ GK +HA  I +       + T L+  Y +C+ I  A  LF+  P    H  W A+  
Sbjct: 154 LEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVT 213

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++ G   +A+  F +M  +G++ N F  PS+L ACG +S  G G ++H  +++  FG 
Sbjct: 214 GYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGA 273

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + FV S+L+DMYSKCG +  A+++ + M   D V+ N+M+ G V++GL  EAL+L   + 
Sbjct: 274 NVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMH 333

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP------------------- 313
              +K +  T+ ++++ FS   D      +  L+   G E                    
Sbjct: 334 LRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFD 393

Query: 314 ------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                       DV+SWTS+++G VHN   +EA   F EM   G  P    I+++L ACA
Sbjct: 394 YAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACA 453

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
               +  GK++H   +  G+   L V ++LV MYAKCG I +A  +FD M  ++ +TW +
Sbjct: 454 ELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTA 513

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           +I G A +G   +                           H GLVE G+  F  M+E Y 
Sbjct: 514 LIVGYAQNGRGRD---------------------------HAGLVEHGRSYFQSMEEVYG 546

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  EHYACM+DLLGR+G+L EA E++  M+ +PD  VW ALL AC+ HGN+EL E AA
Sbjct: 547 IKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAA 606

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
            +L ELEP++A   +LL++LY+ AG
Sbjct: 607 NNLFELEPKNAVPYVLLSNLYSAAG 631



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 213/445 (47%), Gaps = 45/445 (10%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I  Y     ++ AR LF E P  +   W +L   Y R G   EA+ +F EM  +G + N
Sbjct: 78  MIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPN 137

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F   SVL+ C     +  G++IH+  +K  F ++AFVV+ L+DMY+KC  + +A+ +F+
Sbjct: 138 QFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFE 197

Query: 239 EMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI---------- 287
              +K + V   AMV+GY Q G   +A+    ++    ++ N  T+ +++          
Sbjct: 198 LAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACG 257

Query: 288 -----------SGF--------------SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
                      SGF              SK GD     ++ + M       D VSW S+I
Sbjct: 258 FGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVD----DPVSWNSMI 313

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
            G V     +EA   F+ M  +       T  S+L   +   +MR    +H   +  G E
Sbjct: 314 VGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFE 373

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
               V +ALVDMYAK G+   A  +F+KM++++ ++W S++ GC ++G  +EA+ LF +M
Sbjct: 374 AYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEM 433

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMVDLLGRAG 500
                  D +   AVL+AC  + ++E G+++  N ++         ++   +V +  + G
Sbjct: 434 RIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDN--SLVSMYAKCG 491

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALL 525
            + +A ++  +M  + D+  W AL+
Sbjct: 492 CIEDANKVFDSMEIQ-DVITWTALI 515



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 151/327 (46%), Gaps = 47/327 (14%)

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
           HS     +V+S+L    SKCG V+ A+K+FD M ++D  + N M+  Y   G   EA  L
Sbjct: 39  HSSSDSNWVLSNL----SKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKL 94

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
             E  TP    + +TW++LISG+ + G  V   +LF  M+ +G  P+  +W SV      
Sbjct: 95  FYE--TP--IRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSV------ 144

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                                        L  C+    + +GK+IH  AI    + +  V
Sbjct: 145 -----------------------------LRVCSMYVLLEKGKQIHAHAIKTQFDSNAFV 175

Query: 388 RSALVDMYAKCGFISEARTLFD-KMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ER 445
            + LVDMYAKC  I EA  LF+    +RN V W +M+ G + +G   +AIE F  M  E 
Sbjct: 176 VTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEG 235

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + +  +F ++LTAC  +     G ++   +  +          + +VD+  + G L+ A
Sbjct: 236 IECNQFTFPSILTACGSISACGFGAQVHGCIV-RSGFGANVFVGSALVDMYSKCGDLSNA 294

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHG 532
             M++TM  + D   W +++  C   G
Sbjct: 295 RRMLETMEVD-DPVSWNSMIVGCVRQG 320


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/535 (34%), Positives = 279/535 (52%), Gaps = 43/535 (8%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           +PI + S+  +     +++    +   L   K LHAQ++ S L     +  KLI+ ++ C
Sbjct: 6   VPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLC 65

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
           + +  A   F+++   N+H +  +  A++      +A   F  M   G   + F  P +L
Sbjct: 66  RQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLL 125

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV---------------- 230
           K C     +   E +H+ + K  F +D FV +SLID YSKCGS                 
Sbjct: 126 KVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARR 185

Query: 231 ------------------EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
                             E+A+KVFDEM EKD ++ N M+ GYV+ G   +A  L +E+ 
Sbjct: 186 DVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMP 245

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + NVV+W+T++ G+ K+GD  M   LF  M  K    ++VSWT ++SG        
Sbjct: 246 ----ERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVK----NLVSWTIIVSGFAEKGLAR 297

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F +M        + T+ SIL ACA +  +  G++IH        +    + +ALV
Sbjct: 298 EAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALV 357

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
           DMYAKCG ++ A  +F+ +  ++ V+WN+M+ G A HG+  +A+ELF +M EE    + +
Sbjct: 358 DMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKV 417

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +   VL AC H GL++ G R F+ M+  Y ++P  EHY CMVDLLGR GRL EA  +I+ 
Sbjct: 418 TMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRN 477

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M   P+  +WG LLGAC+ H  +ELA     HL ELEP  + N  +L+++YA AG
Sbjct: 478 MPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAG 532


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 176/483 (36%), Positives = 275/483 (56%), Gaps = 21/483 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML--------FDEIPKTNI 144
           +L   K  HA ++ +G  + + IA  L+  Y    N+   R L        FD + K N+
Sbjct: 47  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYA---NVSTNRYLSFESSLRVFDFVRKPNV 103

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W  +           +A+ +++EM +   + N +  P+VLKAC     +  G ++H+ 
Sbjct: 104 FLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAH 163

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATE 263
           ++KH  G D  ++SS I MY+  G + +A+++ D+   E D V  NAM+ GY++ G    
Sbjct: 164 LVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEA 223

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           A  L E  G P  +  + TWN +ISGFS+ G   +  + F  M+    E D +SW+++I 
Sbjct: 224 ARELFE--GMPD-RSMISTWNAMISGFSRCGMVEVAREFFDEMK----ERDEISWSAMID 276

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G +   C  EA + F +M  +   P    + S+L ACA+   + +G+ IH  A    ++ 
Sbjct: 277 GYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQL 336

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           D  + ++LVDMYAKCG I  A  +F+KMS +   +WN+MI G A HG  ++AI+LF++M+
Sbjct: 337 DGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD 396

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
                + ++F  VL AC H GLV+ G  +FN M+++Y + P+ EHY C+VDLLGRAG L 
Sbjct: 397 IYP--NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLT 454

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA +++ ++ TEP   VWGALLGAC+ HGN+EL E   K L ELEP+++    LL+++YA
Sbjct: 455 EAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYA 514

Query: 564 NAG 566
            AG
Sbjct: 515 KAG 517


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 188/546 (34%), Positives = 282/546 (51%), Gaps = 76/546 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIA 149
           ++ Q+ K +H+Q+I +GL       +KLI F   +   N+ +A +LF+ I + N   W  
Sbjct: 43  KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNT 102

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +    +       A+  +  M + G++ N +  P +LK+C  +     G++IH  VLK  
Sbjct: 103 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLG 162

Query: 210 FGTDAFVVSSLIDMYSKCGSV-------------------------------EKAKKVFD 238
             +D FV +SLI+MY++ G +                               + A+++F+
Sbjct: 163 LESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFE 222

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------------------- 279
           E+  +D V+ NAM++GY Q G   EAL   +E+    V PN                   
Sbjct: 223 EIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLEL 282

Query: 280 ---VVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
              V +W             N LI  +SK GD      LF+ +     E D++SW  +I 
Sbjct: 283 GNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI----CEKDIISWNVMIG 338

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMGV 381
           G  H     EA   F++M      P   T  SILPACA    +  GK IH       +G+
Sbjct: 339 GYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGL 398

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             +  + ++L+DMYAKCG I  A+ +F  M  ++  +WN+MI G A HG+ + A+ELF Q
Sbjct: 399 T-NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQ 457

Query: 442 M-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M +E  + D ++F  VL+AC H GLVELG++ F+ M E Y I P+ +HY CM+DLLGRAG
Sbjct: 458 MRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAG 517

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
              EA  ++K M  +PD  +WG+LLGAC+ HGN+EL E AAKHL ELEPE+    +LL++
Sbjct: 518 LFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSN 577

Query: 561 LYANAG 566
           +YA AG
Sbjct: 578 IYATAG 583



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 215/487 (44%), Gaps = 76/487 (15%)

Query: 1   MTYRSCLFPIRDKPFQF---------TLSMNDFYSIRRIYFALLSGTQ--------LVLS 43
           ++Y   LF   ++P QF         +LS +   +I      LL G +        L+ S
Sbjct: 82  LSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKS 141

Query: 44  CSK-SASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHA 102
           C+K  A+  GK       I  H    ++       P  ++  I +Y      Q+G++ +A
Sbjct: 142 CAKVGATQEGKQ------IHGH----VLKLGLESDPFVHTSLINMYA-----QNGELGYA 186

Query: 103 QLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQ 161
           +L+ S  +    ++ T LIT YT    +  AR LF+EIP  +   W A+   YA+ G  +
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
           EA+  F EM    +  N   + +VL AC     +  G  + S +  H  G++  +V++LI
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306

Query: 222 DMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281
           DMYSKCG ++KA+ +F+ + EKDI++ N M+ GY       EAL L  ++    V+PN V
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366

Query: 282 T------------------------------------WNTLISGFSKSGDQVMVSKLFQL 305
           T                                    W +LI  ++K G+     ++F  
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG 426

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M+ K +     SW ++ISGL  +   + A + F++M  +GF P   T   +L AC+ A  
Sbjct: 427 MKPKSLG----SWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482

Query: 366 MRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNSMI 423
           +  G++     +    +   L     ++D+  + G   EA  L   M  + +   W S++
Sbjct: 483 VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542

Query: 424 FGCANHG 430
             C  HG
Sbjct: 543 GACRVHG 549



 Score = 39.3 bits (90), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF--ISEARTLFDKMS 412
           ++L  C S  N+   K+IH   I  G+       S L++  A   F  +S A  LF+ + 
Sbjct: 37  TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQR 471
           + N   WN+MI G +       AI+ + +M     + +  +F  +L +C  VG  + G++
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 472 L 472
           +
Sbjct: 154 I 154


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 184/514 (35%), Positives = 276/514 (53%), Gaps = 49/514 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  K +H     +G     ++   LI  Y +C +I  AR++FD +   ++  W A+ G
Sbjct: 249 ALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-----EKIHSLVLK 207
             A+ G   EA T+F +M  +G   +     S+L      + + TG     +++H   ++
Sbjct: 309 GLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN-----THVSTGAWEWVKEVHKHAVE 363

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
               +D  V S+ + MY +CGS++ A+ +FD++  +++   NAM+ G  Q+    EAL+L
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSL 423

Query: 268 VEEIGTPRVKPNVVT---------------W-------------------NTLISGFSKS 293
             ++      P+  T               W                   N L+  ++K 
Sbjct: 424 FLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKC 483

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G+ +   ++F  M    VE +V +WT +ISGL  + C  EAF  F +ML +G  P + T 
Sbjct: 484 GNTMYAKQVFDDM----VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTY 539

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            SIL ACAS   +   KE+H  A+  G+  DL V +ALV MYAKCG + +AR +FD M E
Sbjct: 540 VSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLE 599

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           R+  +W  MI G A HG   +A++LF +M+ E  K +  SF AVL+AC H GLV+ G+R 
Sbjct: 600 RDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQ 659

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F  + + Y I P  EHY CMVDLLGRAG+L EA   I  M  EP    WGALLGAC  +G
Sbjct: 660 FLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYG 719

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           N+E+AE AAK   +L+P+SA+  +LL+++YA  G
Sbjct: 720 NLEMAEFAAKERLKLKPKSASTYVLLSNIYAATG 753



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 156/541 (28%), Positives = 239/541 (44%), Gaps = 86/541 (15%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK +HA +I SG     ++ T L+  Y +C +I  A+++FD++ + N+  W  + G
Sbjct: 45  SLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIG 104

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G  QEA   F +M  +G   N +   S+L A      +   +++HS  +      
Sbjct: 105 GLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 164

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L+ MY+K GS++ A+ VFD MVE+DI +   M+ G  Q G   EA +L  ++ 
Sbjct: 165 DLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQME 224

Query: 273 TPRVKPNVVTW-------------------------------------NTLISGFSKSGD 295
                PN+ T+                                     N LI  ++K G 
Sbjct: 225 RGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGS 284

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                 +F  M     + DV+SW ++I GL  N C  EAF  F +M  +GF P S T  S
Sbjct: 285 IDDARLVFDGM----CDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLS 340

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L    S       KE+H  A+ +G+  DL V SA V MY +CG I +A+ +FDK++ RN
Sbjct: 341 LLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRN 400

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTA--------------- 459
             TWN+MI G A      EA+ LF QM       D  +F  +L+A               
Sbjct: 401 VTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHS 460

Query: 460 -CCHVGLVELGQRLFNMMQEKYKIMPRTEH---------------YACMVDLLGRAGRLA 503
                GLV+L  R+ N +   Y     T +               +  M+  L + G   
Sbjct: 461 YAIDAGLVDL--RVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGH 518

Query: 504 EAYEMIKTMSTE---PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           EA+ +   M  E   PD   + ++L AC + G +E  +    H        A N  L++D
Sbjct: 519 EAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSH--------AVNAGLVSD 570

Query: 561 L 561
           L
Sbjct: 571 L 571



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 225/475 (47%), Gaps = 39/475 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  K +H+  + +GLA   ++   L+  Y +  +I  AR++FD + + +I  W  + G
Sbjct: 146 ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIG 205

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE---KIHSLVLKHS 209
             A+ G  QEA ++F +M   G   N+    S+L A   ++  G  E   ++H    K  
Sbjct: 206 GLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASA-ITSTGALEWVKEVHKHAGKAG 264

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F +D  V ++LI MY+KCGS++ A+ VFD M ++D+++ NAM+ G  Q G   EA  +  
Sbjct: 265 FISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFL 324

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF-------------------------- 303
           ++      P+  T+ +L++    +G    V ++                           
Sbjct: 325 KMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCG 384

Query: 304 -----QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
                QL+  K    +V +W ++I G+    C  EA   F +M  +GF P + T  +IL 
Sbjct: 385 SIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILS 444

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A      +   KE+H  AI  G+  DL V +ALV MYAKCG    A+ +FD M ERN  T
Sbjct: 445 ANVGEEALEWVKEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTT 503

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W  MI G A HG   EA  LF QM  E    D  ++ ++L+AC   G +E  + + +   
Sbjct: 504 WTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAV 563

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
               ++        +V +  + G + +A  +   M  E D++ W  ++G    HG
Sbjct: 564 NA-GLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHG 616



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 166/332 (50%), Gaps = 41/332 (12%)

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           + G YA  GY ++A+ V+ +M  +G + N     S+LKAC     +  G+KIH+ +++  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F +D  V ++L++MY KCGS++ A+ +FD+MVE+++++   M+ G    G   EA +   
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 270 EIGTPRVKPNVVTW-----------------------------------NTLISGFSKSG 294
           ++      PN  T+                                   N L+  ++KSG
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                  +F  M    VE D+ SWT +I GL  +    EAF  F +M   G  P   T  
Sbjct: 181 SIDDARVVFDGM----VERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYL 236

Query: 355 SILPACA--SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           SIL A A  S   +   KE+H  A   G   DL V +AL+ MYAKCG I +AR +FD M 
Sbjct: 237 SILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC 296

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           +R+ ++WN+MI G A +G   EA  +F +M++
Sbjct: 297 DRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQ 328



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 195/443 (44%), Gaps = 56/443 (12%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   +  ++   A +  K +H   +  GL    ++ +  +  Y  C +I  A+++FD++ 
Sbjct: 338 YLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA 397

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             N+  W A+ G  A++   +EA+++F +M  +G   +     ++L A     ++G  E 
Sbjct: 398 VRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA-----NVGE-EA 451

Query: 201 IHSLVLKHSFGTDAFVV-----SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
           +  +   HS+  DA +V     ++L+ MY+KCG+   AK+VFD+MVE+++     M+SG 
Sbjct: 452 LEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGL 511

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTW-------------------------------- 283
            Q G   EA +L  ++    + P+  T+                                
Sbjct: 512 AQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDL 571

Query: 284 ---NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
              N L+  ++K G      ++F  M    +E DV SWT +I GL  +    +A D F +
Sbjct: 572 RVGNALVHMYAKCGSVDDARRVFDDM----LERDVYSWTVMIGGLAQHGRGLDALDLFVK 627

Query: 341 MLSQGFCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           M  +GF P   +  ++L AC+ A  +  G ++        G+E  +   + +VD+  + G
Sbjct: 628 MKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAG 687

Query: 400 FISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLT 458
            + EA+     M  E     W +++  C  +G  + A   F   E  K     + T VL 
Sbjct: 688 QLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMA--EFAAKERLKLKPKSASTYVLL 745

Query: 459 ACCHVGLVELGQRLF--NMMQEK 479
           +  +       Q+L   +MMQ +
Sbjct: 746 SNIYAATGNWEQKLLVRSMMQRR 768



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 5/214 (2%)

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +I G       ++A   + +M  +G  P   T  SIL AC S  +++ GK+IH   I  G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            + D+ V +ALV+MY KCG I +A+ +FDKM ERN ++W  MI G A++G   EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 441 QMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGR 498
           QM+    + +  ++ ++L A    G +E  + + +  +     +  R  +   +V +  +
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN--ALVHMYAK 178

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +G + +A  +   M  E D+F W  ++G    HG
Sbjct: 179 SGSIDDARVVFDGM-VERDIFSWTVMIGGLAQHG 211


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 278/506 (54%), Gaps = 32/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ LH+ +I +G++    +   L+  Y  C +I  A  +F      N+  W  +  
Sbjct: 329 ALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLV 388

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A+ +     E+  +F +M I+GL  N F  PS+L+ C  +  +  GE+IH+ V+K  F  
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQF 448

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + +V S LIDMY+K G ++ A  +   + E D+V+  A++SGY Q  L  EAL   +E+ 
Sbjct: 449 NVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEML 508

Query: 273 TPRVKPNVVTWNTLIS---------------------GFSK--SGDQVMVSKLFQLMRAK 309
              ++ + + +++ IS                     G+S+  S    +VS   +  R K
Sbjct: 509 NRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIK 568

Query: 310 GV--------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                       D +SW  +ISG   +   ++A   F +M       +  T  S + A A
Sbjct: 569 EAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAA 628

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + AN+++GK+IH   I  G + D+ V +AL+  YAKCG I +AR  F +M E+N V+WN+
Sbjct: 629 NIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNA 688

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G + HGY +EA+ LF +M++  ++ +H++F  VL+AC HVGLV  G   F  M +++
Sbjct: 689 MITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEH 748

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            ++P+  HYAC+VDL+ RAG L+ A + I+ M  EPD  +W  LL AC  H N+E+ E A
Sbjct: 749 GLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFA 808

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A+HL ELEPE +A  +LL+++YA +G
Sbjct: 809 AQHLLELEPEDSATYVLLSNMYAVSG 834



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 230/475 (48%), Gaps = 44/475 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA++I  GL     I+  LI  Y +   I  AR +FD +   +   W+A+   +++ GY
Sbjct: 134 IHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGY 193

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA+ +F EMH  G+    +V  SVL  C  +     GE++H+LV K+    + +V ++
Sbjct: 194 EEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNA 253

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ +YS+  +   A+KVF +M  KD V+ N+++SG  Q+G +  AL L  ++    +KP+
Sbjct: 254 LVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPD 313

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND------- 332
            VT  +L+S  + +G      +L   +   G+  D++   +++   V+  C+D       
Sbjct: 314 CVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVN--CSDIKTAHEM 371

Query: 333 --------------------------EAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                                     E+F  F++M  +G  P   T  SIL  C S   +
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGAL 431

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G++IH   I  G + +++V S L+DMYAK G +  A  +   ++E + V+W ++I G 
Sbjct: 432 DLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGY 491

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
           A H    EA++ F +M  R  + D++ F++ ++AC  +  +  G+++      +  +   
Sbjct: 492 AQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQI----HAQSYVSGY 547

Query: 486 TEHYA---CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +E  +    +V L  R GR+ EAY   + +  + D   W  L+      G  E A
Sbjct: 548 SEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISGFAQSGYCEDA 601



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 234/505 (46%), Gaps = 55/505 (10%)

Query: 87  IYIRDRALQSG-----KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK 141
           I++ D  L SG     K LH +++  G    + +  KL+  Y    ++     +F+++P 
Sbjct: 14  IWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPN 73

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GHLSDIGTGEK 200
            ++  W  +   +  +      + +F  M  + +        SVL+AC GH   I   E+
Sbjct: 74  RSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQ 133

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IH+ ++ H       + + LI +Y+K G +  A+KVFD +  KD V+  AM+SG+ Q G 
Sbjct: 134 IHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGY 193

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSK-----SGDQ------------------- 296
             EA++L  E+ T  + P    +++++SG +K      G+Q                   
Sbjct: 194 EEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNA 253

Query: 297 -----------VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                      V   K+F  M++K    D VS+ S+ISGL     +D A + F +M    
Sbjct: 254 LVTLYSRMPNFVSAEKVFSKMQSK----DEVSFNSLISGLAQQGFSDGALELFTKMKRDY 309

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P   T++S+L ACAS   + +G+++H   I  G+  D+ V  AL+D+Y  C  I  A 
Sbjct: 310 LKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAH 369

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVG 464
            +F      N V WN M+          E+  +F QM+ +  + +  ++ ++L  C  VG
Sbjct: 370 EMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
            ++LG+++   +    K   +   Y C  ++D+  + G+L  A+ +++T+ TE D+  W 
Sbjct: 430 ALDLGEQIHTQV---IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL-TEDDVVSWT 485

Query: 523 ALLGACKNHGNIELAEIAAKHLSEL 547
           AL+     H    L   A KH  E+
Sbjct: 486 ALISGYAQH---NLFAEALKHFKEM 507



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 236/489 (48%), Gaps = 36/489 (7%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P  +S  +    + +    G+ LHA +   G +  T +   L+T Y+   N   A  +F
Sbjct: 212 TPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVF 271

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
            ++   +   + +L    A++G+   A+ +F +M    LK +   + S+L AC     + 
Sbjct: 272 SKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALC 331

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            GE++HS V+K    +D  V  +L+D+Y  C  ++ A ++F     +++V  N M+  + 
Sbjct: 332 KGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFG 391

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQV---MVSKLFQL--- 305
           +    +E+  +  ++    + PN  T+ +++      G    G+Q+   ++   FQ    
Sbjct: 392 KLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVY 451

Query: 306 -------MRAKG-------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                  M AK               E DVVSWT++ISG   +    EA   FKEML++G
Sbjct: 452 VCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRG 511

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
               +   SS + ACA    + +G++IH  + V G   DL + +ALV +YA+CG I EA 
Sbjct: 512 IQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAY 571

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD--HLSFTAVLTACCHV 463
             F+K+  +++++WN +I G A  GYC++A+++F QM  R KL+    +F + ++A  ++
Sbjct: 572 LEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQM-NRAKLEASFFTFGSAVSAAANI 630

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G+++  M+ ++       E    ++    + G + +A      M  + D+  W A
Sbjct: 631 ANIKQGKQIHAMIIKR-GFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDV-SWNA 688

Query: 524 LLGACKNHG 532
           ++     HG
Sbjct: 689 MITGYSQHG 697



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 161/317 (50%), Gaps = 7/317 (2%)

Query: 57  NGIFIEA--HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           + +F EA  H+K  +++R        +S  I      +AL  G+ +HAQ  VSG +    
Sbjct: 494 HNLFAEALKHFK-EMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLS 552

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I   L++ Y  C  I  A + F++I   +   W  L   +A+ GY ++A+ VF +M+   
Sbjct: 553 IGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAK 612

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           L+ + F   S + A  ++++I  G++IH++++K  F +D  V ++LI  Y+KCGS+E A+
Sbjct: 613 LEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDAR 672

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           + F EM EK+ V+ NAM++GY Q G   EA+NL E++      PN VT+  ++S  S  G
Sbjct: 673 REFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVG 732

Query: 295 DQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
                   F+ M +  G+ P    +  V+  +        A    +EM  +   P +   
Sbjct: 733 LVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIE---PDATIW 789

Query: 354 SSILPACASAANMRRGK 370
            ++L AC    N+  G+
Sbjct: 790 RTLLSACTVHKNVEVGE 806



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 183/395 (46%), Gaps = 43/395 (10%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M  +G+  N      +L  C +   +   +K+H  +LK  FG ++ + + L+D+Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------ 283
           ++   KVF++M  + + + + ++SG++++ ++   L+L   +    V P  +++      
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 284 ------------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                                         N LI  ++K+G  +   K+F  +  K    
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTK---- 176

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D VSW ++ISG   N   +EA   F EM + G  PT    SS+L  C        G+++H
Sbjct: 177 DSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLH 236

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
                 G   + +V +ALV +Y++      A  +F KM  ++ V++NS+I G A  G+ D
Sbjct: 237 ALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSD 296

Query: 434 EAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
            A+ELF +M+ +  K D ++  ++L+AC   G +  G++L + +  K  I         +
Sbjct: 297 GALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVI-KAGISSDMIVEGAL 355

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           +DL      +  A+EM  T  TE ++ +W  +L A
Sbjct: 356 LDLYVNCSDIKTAHEMFLTAQTE-NVVLWNVMLVA 389


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 171/531 (32%), Positives = 306/531 (57%), Gaps = 21/531 (3%)

Query: 38  TQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSG 97
           T+LVL C++ A+D     I    +++H ++ +           +++ + +Y +      G
Sbjct: 26  TRLVLHCAR-AND----FIQAKRLQSHMELNLFQPK---DSFIHNQLLHLYAK-----FG 72

Query: 98  KILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           K+  AQ +   + +    +   L++ Y +   + +  ++FD++P  +   +  L   +A 
Sbjct: 73  KLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFAS 132

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  +A+ V   M   G +   +   + L+AC  L D+  G++IH  ++    G + FV
Sbjct: 133 NGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFV 192

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +++ DMY+KCG ++KA+ +FD M++K++V+ N M+SGYV+ G   E ++L  E+    +
Sbjct: 193 RNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGL 252

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           KP++VT + +++ + + G       LF  +  K    D + WT++I G   N   ++A+ 
Sbjct: 253 KPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKK----DEICWTTMIVGYAQNGREEDAWM 308

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +ML +   P S TISS++ +CA  A++  G+ +HG  +VMG++  + V SALVDMY 
Sbjct: 309 LFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYC 368

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTA 455
           KCG   +AR +F+ M  RN +TWN+MI G A +G   EA+ L+ +M++   K D+++F  
Sbjct: 369 KCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVG 428

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           VL+AC +  +V+ GQ+ F+ + E + I P  +HYACM+ LLGR+G + +A ++I+ M  E
Sbjct: 429 VLSACINADMVKEGQKYFDSISE-HGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHE 487

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           P+  +W  LL  C   G+++ AE+AA HL EL+P +A   ++L++LYA  G
Sbjct: 488 PNYRIWSTLLSVCAK-GDLKNAELAASHLFELDPRNAGPYIMLSNLYAACG 537


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 181/537 (33%), Positives = 285/537 (53%), Gaps = 63/537 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIAL 150
           ++    K LHAQ++ + L   + ++T +++ Y+    +H + ++F+ +P       W ++
Sbjct: 19  KSKSQAKQLHAQILRTSLPSPSLLST-ILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSI 77

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              Y   G    +++ F +M   G   +  V PSVLK+C  + D+  GE +H  +++   
Sbjct: 78  IRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGM 137

Query: 211 GTDAFVVSSLIDMYSKCGSVEKA---KKVFDE--------------------------MV 241
           G D +  ++L++MYSK  S+E+    KKVFDE                          M 
Sbjct: 138 GFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMP 197

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           ++DIV+ N ++SG  Q G+  +AL +V E+G   ++P+  T ++++  F++  + +   +
Sbjct: 198 KRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKE 257

Query: 302 LFQLMRAKGVEPDV-------------------------------VSWTSVISGLVHNFC 330
           +       G + DV                               +SW S+I+G V N  
Sbjct: 258 IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGM 317

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            DE    F++ML     P   + SSI+PACA    +  GK++HG  I    +G++ + SA
Sbjct: 318 FDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASA 377

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLD 449
           LVDMYAKCG I  AR +FDKM   + V+W +MI G A HG+  +AI LF +ME E  K +
Sbjct: 378 LVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPN 437

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           +++F AVLTAC H GLV+   + FN M + Y+I+P  EHYA + DLLGR GRL EAYE I
Sbjct: 438 YVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFI 497

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             M  EP   VW  LL AC+ H NIELAE  +K L  ++P++    +LL+++Y+ AG
Sbjct: 498 SDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAG 554



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 187/389 (48%), Gaps = 22/389 (5%)

Query: 76  LSPAAY--SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
           L P ++  S  + I+     L  GK +H   I +G      I + LI  Y +C  +  + 
Sbjct: 232 LRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSC 291

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
            +F  +P+ +   W ++     + G   E +  F +M I  +K N     S++ AC HL+
Sbjct: 292 RVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLT 351

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
            +  G+++H  +++  F  + F+ S+L+DMY+KCG++  A+ +FD+M   D+V+  AM+ 
Sbjct: 352 TLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIM 411

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVE 312
           GY   G A +A++L + +    VKPN V +  +++  S +G      K F  M +   + 
Sbjct: 412 GYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRII 471

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P +  + +V   L      +EA++   +M  +   PT +  S++L AC    N+   +++
Sbjct: 472 PGLEHYAAVADLLGRVGRLEEAYEFISDMHIE---PTGSVWSTLLAACRVHKNIELAEKV 528

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL----FDK-MSERNTVTW-------N 420
                 +  + ++     L ++Y+  G   +AR L     DK M ++   +W       +
Sbjct: 529 SKKLFTVDPQ-NIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVH 587

Query: 421 SMIFGCANHGYCD---EAIELFNQMEERK 446
           + + G  +H Y D   EA+++  +  ER+
Sbjct: 588 AFVAGDKSHPYYDRINEALKVLLEQMERE 616


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/402 (38%), Positives = 253/402 (62%), Gaps = 1/402 (0%)

Query: 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223
           +T F  +H  G K +   + S L+A   L     G++IH  +++ +   D +V +SL+DM
Sbjct: 3   LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 62

Query: 224 YSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
           Y K   +EKA+ V      K++ A N+++SGY  +G   EA+ L+ ++    + P++VTW
Sbjct: 63  YVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTW 122

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           N L+SG+S  G       +   +++ G+ P+VVSWT++ISG   N    +A   F +M +
Sbjct: 123 NGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQA 182

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
           +   P S TI S+L ACA  + +++G+E+H  ++ +G   D++V +AL+DMY++ G +  
Sbjct: 183 ENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKV 242

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCH 462
           A  +F+K+ E+    WN M+ G A H + +E + L+++M ER  + D ++FTA+L+AC +
Sbjct: 243 AYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKN 302

Query: 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
            GLV+ G + F+ MQE Y I+P  EHY CMVDLLG++G L EA   I+TM  +PD  +WG
Sbjct: 303 SGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWG 362

Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           ALL +CK H NI+LAEIAA+ L ++EP ++AN +L+ +LY++
Sbjct: 363 ALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSS 404



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 139/304 (45%), Gaps = 8/304 (2%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           ++ R+ + +  A++  I  Y           L  Q++  G+         L++ Y+    
Sbjct: 75  VLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGLVSGYSMQGR 134

Query: 129 IHHARMLFDEIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
           I  A  + + I  +    N+  W AL    ++   + +A+ +F +M  + +K N   I S
Sbjct: 135 IDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICS 194

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +L AC   S +  GE++H   +K  F  D +V ++LIDMYS+ G ++ A  VF+++ EK 
Sbjct: 195 LLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKT 254

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +   N M+ GY       E + L +++    ++P+ +T+  L+S    SG      K F 
Sbjct: 255 LPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFD 314

Query: 305 LMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
            M+    + P +  +  ++  L  +   DEA    + M  +   P ++   ++L +C   
Sbjct: 315 SMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIK---PDASIWGALLASCKIH 371

Query: 364 ANMR 367
            N++
Sbjct: 372 KNIK 375


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 177/495 (35%), Positives = 267/495 (53%), Gaps = 33/495 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA++I  GL +   I ++ +T      N  +   +F+ +   +   W      Y+    
Sbjct: 44  VHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYS 103

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
               V++F  M       + F  PS++KAC  +  +  G   H   ++   G D FV++S
Sbjct: 104 VSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTS 163

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID+Y KCG +  A+KVFDEM E+++V+  AM++GY       EA  L +E+     + N
Sbjct: 164 LIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP----EKN 219

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV---------------------------E 312
            V+WN +ISG+ K GD     K+F  M  + V                           E
Sbjct: 220 AVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPE 279

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            DVV+W+++ISG V N   +EA   F EM S+   P    + S++ AC+   ++   K +
Sbjct: 280 RDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWV 339

Query: 373 HGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
                   ++    HV +AL+DM AKCG +  A  LF++M +R+ +++ SM+ G + HG 
Sbjct: 340 DDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGC 399

Query: 432 CDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             +A+ LF++M  E    D ++FT +LTAC   GLV+ G   F  M+  Y I+P  +HYA
Sbjct: 400 GPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYA 459

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMVDLLGRAGRL EAYE++K+M  EP    WGALLGACK H +IEL E+ A  L ELEP+
Sbjct: 460 CMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQ 519

Query: 551 SAANNMLLTDLYANA 565
           +A N +LL+++YA A
Sbjct: 520 NAGNYVLLSNIYAAA 534



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 168/389 (43%), Gaps = 64/389 (16%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ G   H   +  G+     + T LI  Y +C  I  AR +FDE+ + N+  W A+  
Sbjct: 138 GVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIA 197

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA      EA  +F EM  +       +I   +K CG   D+ +  K+    + H    
Sbjct: 198 GYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVK-CG---DLRSARKMFD-EMPHR--- 249

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +    +++ID Y+K G +  A+ VF+E  E+D+VA +A++SGYVQ G   EA+ +  E+ 
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMC 309

Query: 273 TPRVKPNVVTWNTLISGFS------------------------------------KSGDQ 296
           +  VKP+     +L+S  S                                    K G  
Sbjct: 310 SRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSM 369

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              +KLF+ M  +    D++S+ S++ GL  + C  +A   F  ML++G  P     + I
Sbjct: 370 DRATKLFEEMPKR----DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVI 425

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHV------RSALVDMYAKCGFISEARTLFDK 410
           L AC+     R G    GC     ++ D  +       + +VD+  + G + EA  L   
Sbjct: 426 LTACS-----RAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKS 480

Query: 411 MS-ERNTVTWNSMIFGCANHGYCDEAIEL 438
           M  E +   W +++  C  H  CD  IEL
Sbjct: 481 MPVEPHAGAWGALLGACKLH--CD--IEL 505



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 186/412 (45%), Gaps = 46/412 (11%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           I ++LKAC   S   T E++H+ +++     D F++S  + + +   +      VF+ + 
Sbjct: 28  ISTLLKACTTTS---TLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVS 84

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK--------- 292
               V  N  + GY +    +  ++L   +      P+  T+ +LI   SK         
Sbjct: 85  SPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA 144

Query: 293 ----------SGDQVMVSKLFQL-------MRAKGV-----EPDVVSWTSVISGLVHNFC 330
                      GD  +++ L  L       + A+ V     E +VVSWT++I+G      
Sbjct: 145 FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSD 204

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA   F EM  +     +A IS  +  C    + R+  +      V+         + 
Sbjct: 205 LVEARKLFDEMPEKNAVSWNAIISGYV-KCGDLRSARKMFDEMPHRNVVSF-------TT 256

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
           ++D YAK G ++ AR +F++  ER+ V W+++I G   +G  +EA+++F +M  R  K D
Sbjct: 257 MIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPD 316

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
                ++++AC  +G +EL + + + +++    + R    A ++D+  + G +  A ++ 
Sbjct: 317 EFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLF 376

Query: 510 KTMSTEPDLFVWGALLGACKNHG-NIELAEIAAKHLSE-LEPESAANNMLLT 559
           + M    DL  + +++     HG   +   + ++ L+E L P+  A  ++LT
Sbjct: 377 EEMPKR-DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 427



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 10/206 (4%)

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           T+++IS++L AC + + +   +++H   I  G+  D  + S  + +       S   ++F
Sbjct: 24  TTSSISTLLKACTTTSTL---EQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVF 80

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVE 467
           + +S  +TV WN+ I G + +      + LF +M+    + D  ++ +++ AC  V  V+
Sbjct: 81  NGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVK 140

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            G   F+    +  +         ++DL G+ G +  A ++   M  E ++  W A++  
Sbjct: 141 EGVA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMG-ERNVVSWTAMIAG 198

Query: 528 CKNHGNIELAEIAAKHLSELEPESAA 553
             +  ++    + A+ L +  PE  A
Sbjct: 199 YASFSDL----VEARKLFDEMPEKNA 220


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 181/508 (35%), Positives = 278/508 (54%), Gaps = 36/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G ++H + +VSG +    +   L+  Y  C  +  AR +F+ + K ++  W  +   
Sbjct: 200 LNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISG 259

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + + G  +EA+ VF+ M    ++ +   I S L +CGHL ++  G K+H LV K+     
Sbjct: 260 WFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEK 319

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L+DMYS+CG +++A  VF E  EKD++   +M++GY+  G A  AL L   +  
Sbjct: 320 IEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQL 379

Query: 274 PRVKPNVVTWNTLISGFS-----KSG--------------DQVMVSKL------------ 302
             V PN VT  +L+S  +     K G              D ++V+ L            
Sbjct: 380 DGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSY 439

Query: 303 -FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            FQ+  AK      V W +++SGL+HN    EA   FK ML +      AT +S++PA A
Sbjct: 440 SFQVF-AKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYA 498

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM--SERNTVTW 419
             A++++   +H   +  G    + V + L+DMY+KCG +  A  +FD++   E++ + W
Sbjct: 499 ILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVW 558

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           + +I G   HG+ + A+ LFNQM     + + ++FT+VL AC H GLV+ G  LF  M E
Sbjct: 559 SVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIE 618

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y   P   HY C+VDLLGRAGRL EAY++IK+M  + +  +WGALLGAC  H N+EL E
Sbjct: 619 NYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGE 678

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           +AA+ L ELEPES  N +LL ++YA  G
Sbjct: 679 VAAERLFELEPESTGNYILLANIYAAVG 706



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 236/492 (47%), Gaps = 48/492 (9%)

Query: 88  YIRDRALQSGKILHAQLIVSGL---ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           Y   R+L   KILH   I SGL        + + L   Y  C  +  AR LFD++   ++
Sbjct: 89  YAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSL 148

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
             W A+   Y  +G+H +A+ VF  M   G    + +  P V+KAC  +S +  G  IH 
Sbjct: 149 FLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHG 208

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
             L   F ++ FV +SL+ MY  CG V  A++VF+ M+++ +V+ N M+SG+ Q G   E
Sbjct: 209 RALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEE 268

Query: 264 ALNLVEEIGTPRVKPNVVTW-----------------------------------NTLIS 288
           AL +   +   RV+P+  T                                    N L+ 
Sbjct: 269 ALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVD 328

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
            +S+ G     S +F    A+  E DV++WTS+I+G + N     A      M   G  P
Sbjct: 329 MYSRCGGMDEASLVF----AETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVP 384

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
            + T++S+L ACAS   +++GK +H   +   ++ D+ V +AL+DMYAKC  +S +  +F
Sbjct: 385 NAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVF 444

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVE 467
            K S + TV WN+++ G  ++    EA+ LF  M  E  + +H +F +V+ A  +  L +
Sbjct: 445 AKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPA--YAILAD 502

Query: 468 LGQRL-FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM-STEPDLFVWGALL 525
           L Q +  +    +   + +      ++D+  + G L  A+++   + + E D+ VW  L+
Sbjct: 503 LKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLI 562

Query: 526 GACKNHGNIELA 537
                HG+ E A
Sbjct: 563 AGYGMHGHGETA 574



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 173/391 (44%), Gaps = 43/391 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L+ G  +H  +  + L    ++   L+  Y+ C  +  A ++F E  + ++  W ++ 
Sbjct: 299 KELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMI 358

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G  + A+ +   M + G+  N   + S+L AC  L  +  G+ +H+ V++    
Sbjct: 359 NGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLD 418

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  VV++LIDMY+KC +V  + +VF +   K  V  NA++SG +   LA EA+ L + +
Sbjct: 419 SDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSM 478

Query: 272 GTPRVKPNVVTWNTLI---------------------SGF--------------SKSGDQ 296
               V+ N  T+N++I                     SGF              SK G  
Sbjct: 479 LIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSL 538

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               K+F  +  K  E D++ W+ +I+G   +   + A   F +M+  G  P   T +S+
Sbjct: 539 DYAHKIFDEIPNK--EKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSV 596

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           L AC+    +  G  +    I       L +  + +VD+  + G + EA  L   M  ++
Sbjct: 597 LHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQ 656

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           N   W +++  C  H    + +EL     ER
Sbjct: 657 NHSIWGALLGACLIH----QNVELGEVAAER 683



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           A ++  I  Y     L+    LH+ L+ SG      + T LI  Y++C ++ +A  +FDE
Sbjct: 488 ATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDE 547

Query: 139 IP--KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           IP  + +I  W  L   Y   G+ + AV +F++M   G++ N     SVL AC H   + 
Sbjct: 548 IPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVD 607

Query: 197 TGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
            G  +   +++ ++ +       + ++D+  + G +++A  +   M
Sbjct: 608 DGLTLFKYMIE-NYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSM 652


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 263/510 (51%), Gaps = 71/510 (13%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP------------ 140
           A + GK +H    VSGL     +   +   Y  C  +  AR +FD +             
Sbjct: 131 AFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLC 190

Query: 141 -----------------------KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
                                  + NI  W  +   + R GYH+EAV +F ++H  G   
Sbjct: 191 AYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCP 250

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +   + SVL + G    +  G  IH  V+K     D  V+S++IDMY K G V     +F
Sbjct: 251 DQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLF 310

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           ++    +    NA ++G  + GL  +AL                                
Sbjct: 311 NQFEMMEAGVCNAYITGLSRNGLVDKAL-------------------------------- 338

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F+L + + +E +VVSWTS+I+G   N  + EA + F+EM   G  P   TI S+L
Sbjct: 339 ---EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           PAC + A +  G+  HG A+ + +  ++HV SAL+DMYAKCG I+ ++ +F+ M  +N V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455

Query: 418 TWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WNS++ G + HG   E + +F   M  R K D +SFT++L+AC  VGL + G + F MM
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            E+Y I PR EHY+CMV+LLGRAG+L EAY++IK M  EPD  VWGALL +C+   N++L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AEIAA+ L  LEPE+    +LL+++YA  G
Sbjct: 576 AEIAAEKLFHLEPENPGTYVLLSNIYAAKG 605



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 213/468 (45%), Gaps = 73/468 (15%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           HA+++ SG      I+ KLI  Y+     + A ++   IP   I+ + +L  A  +    
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
            +++ VF  M   GL  +  V+P++ K C  LS    G++IH +        DAFV  S+
Sbjct: 98  TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
             MY +CG +  A+KVFD M +KD+V  +A++  Y ++G   E + ++ E+ +  ++ N+
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI 217

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           V+WN ++SGF++SG       +FQ +   G                  FC          
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLG------------------FC---------- 249

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
                  P   T+SS+LP+   +  +  G+ IHG  I  G+  D  V SA++DMY K G 
Sbjct: 250 -------PDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGH 302

Query: 401 ISEARTLFDKMS-----------------------------------ERNTVTWNSMIFG 425
           +    +LF++                                     E N V+W S+I G
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
           CA +G   EA+ELF +M+    K +H++  ++L AC ++  +  G R  +    +  ++ 
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLD 421

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                + ++D+  + GR+  +  +   M T+ +L  W +L+     HG
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHG 468


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 177/522 (33%), Positives = 287/522 (54%), Gaps = 41/522 (7%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y+  I  +   ++L + K LH  ++ SG +  +    KLI  Y +C  I  AR LFDE+P
Sbjct: 4   YTSLIAQFTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +I  W ++  ++  RG  +EA+ ++  M  +G+  + +   ++ KA   +     G+K
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 201 IHSLVLKHSFG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
            H L +   F  +D FV + ++DMY+K G ++ A+ VFD +++KD+V   A++ GY QRG
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRG 182

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV---- 315
           L  EAL + E++   R+KPN  T  +++      GD V    +  L+   G+E  V    
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQT 242

Query: 316 ---------------------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
                                      V+WTS I GLV N   + A   F+EM+     P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISP 302

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              T SSIL AC+S A +  G++IH   + +GV+G+ +V +AL+ +Y KCG + +AR++F
Sbjct: 303 NHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVF 362

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH----LSFTAVLTACCHVG 464
           + ++E + V+ N+MI+  A +G+  EA+ELF +M   KKL H    ++F ++L AC + G
Sbjct: 363 ESLTELDVVSINTMIYAYAQNGFGHEALELFERM---KKLGHKPNVVTFISILLACNNAG 419

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           LVE G ++F++++  + I    +HY CM+DLLGRA R  EA  +I+     PD+  W  L
Sbjct: 420 LVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEE-GKNPDVIQWRTL 478

Query: 525 LGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L ACK HG +E+AE   K + +  P     ++LLT++YA+AG
Sbjct: 479 LNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAG 520


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 177/508 (34%), Positives = 275/508 (54%), Gaps = 41/508 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H Q I  G      + T L+  Y + +++     +FDE+   N+  W +L   Y +
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G +++A+ +F +M ++G+K N F   +VL        +  G ++H++V+K    +  FV
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S+++MYSK   V  AK VFD M  ++ V+ N+M++G+V  GL  EA  L   +    V
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 277 KPNVVTWNTLIS-----------------------------------GFSKSGDQVMVSK 301
           K     + T+I                                     +SK  +     K
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPAC 360
           LF +M   GV+ +VVSWT++ISG V N   D A + F +M   +G  P   T SS+L AC
Sbjct: 351 LFCMMH--GVQ-NVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNAC 407

Query: 361 AS-AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           A+  A++ +GK+ H C+I  G    L V SALV MYAK G I  A  +F +  +R+ V+W
Sbjct: 408 AAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSW 467

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSMI G A HG   +++++F +M  +  +LD ++F  V++AC H GLV  GQR F++M +
Sbjct: 468 NSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVK 527

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y I+P  EHY+CMVDL  RAG L +A ++I  M       +W  LL AC+ H N++L E
Sbjct: 528 DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGE 587

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           +AA+ L  L+P+ +A  +LL+++YA AG
Sbjct: 588 LAAEKLISLQPQDSAAYVLLSNIYATAG 615



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 215/437 (49%), Gaps = 37/437 (8%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           H++ LFDE P+  + R   L   ++R   ++EA+ +F  +   G   +   +  VLK CG
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            L D   G+++H   +K  F  D  V +SL+DMY K  SVE  ++VFDEM  K++V+  +
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV-------- 297
           +++GY Q GL  +AL L  ++    +KPN  T+  ++ G +     + G QV        
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 298 -------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                        M SK   +  AK V       + VSW S+I+G V N  + EAF+ F 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            M  +G   T    ++++  CA+   M   K++H   I  G + DL++++AL+  Y+KC 
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCS 343

Query: 400 FISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAV 456
            I +A  LF  M   +N V+W ++I G   +G  D A+ LF QM  EE  + +  +F++V
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSV 403

Query: 457 LTACCH-VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           L AC      VE G++ F+    K          + +V +  + G +  A E+ K    +
Sbjct: 404 LNACAAPTASVEQGKQ-FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVD 461

Query: 516 PDLFVWGALLGACKNHG 532
            DL  W +++     HG
Sbjct: 462 RDLVSWNSMISGYAQHG 478



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 175/383 (45%), Gaps = 52/383 (13%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D A++ G  +H  +I SGL     +   ++  Y++   +  A+ +FD +   N   W ++
Sbjct: 206 DGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSM 265

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +   G   EA  +F+ M ++G+K    +  +V+K C ++ ++   +++H  V+K+  
Sbjct: 266 IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGS 325

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVE 269
             D  + ++L+  YSKC  ++ A K+F  M   +++V+  A++SGYVQ G    A+NL  
Sbjct: 326 DFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFC 385

Query: 270 EIGTPR-VKPNVVTWNTLI----------------------SGFSKSGDQVMVSKLFQLM 306
           ++     V+PN  T+++++                      SGFS +   + VS     M
Sbjct: 386 QMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNA---LCVSSALVTM 442

Query: 307 RAK-------------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
            AK              V+ D+VSW S+ISG   + C  ++   F+EM S+       T 
Sbjct: 443 YAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITF 502

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHV------RSALVDMYAKCGFISEARTL 407
             ++ AC  A  +  G+      +      D H+       S +VD+Y++ G + +A  L
Sbjct: 503 IGVISACTHAGLVNEGQRYFDLMV-----KDYHIVPTMEHYSCMVDLYSRAGMLEKAMDL 557

Query: 408 FDKMS-ERNTVTWNSMIFGCANH 429
            +KM        W +++  C  H
Sbjct: 558 INKMPFPAGATIWRTLLAACRVH 580



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 180/378 (47%), Gaps = 20/378 (5%)

Query: 55  LINGIFIEAH---YKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLAR 111
           + NG+ +EA    Y+M +      L+   ++  I++    + +   K LH Q+I +G   
Sbjct: 270 VTNGLDLEAFELFYRMRL--EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327

Query: 112 LTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEM 170
              I T L+  Y++C  I  A  LF  +    N+  W A+   Y + G    A+ +F +M
Sbjct: 328 DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM 387

Query: 171 HI-QGLKQNIFVIPSVLKACGH-LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228
              +G++ N F   SVL AC    + +  G++ HS  +K  F     V S+L+ MY+K G
Sbjct: 388 RREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRG 447

Query: 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288
           ++E A +VF   V++D+V+ N+M+SGY Q G   ++L + EE+ +  ++ + +T+  +IS
Sbjct: 448 NIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVIS 507

Query: 289 GFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
             + +G      + F LM +   + P +  ++ ++         ++A D   +M      
Sbjct: 508 ACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMP----F 563

Query: 348 PTSATI-SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE--- 403
           P  ATI  ++L AC    N++ G E+    ++     D      L ++YA  G   E   
Sbjct: 564 PAGATIWRTLLAACRVHLNVQLG-ELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAK 622

Query: 404 ARTLFD--KMSERNTVTW 419
            R L D  K+ +    +W
Sbjct: 623 VRKLMDMKKVKKEAGYSW 640


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 169/529 (31%), Positives = 279/529 (52%), Gaps = 32/529 (6%)

Query: 70  ISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           +    H+ P   S  ++    + ++  G+ LH   + +       + + L+  Y +   +
Sbjct: 60  VEPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKV 119

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
               ++F E+P  N+  W A+     R GY++EA+  F +M IQ +  + +   S LKAC
Sbjct: 120 DEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKAC 179

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
                +  G +IH   LK  F   +FV ++L  MY+KCG ++   ++F+ M ++D+V+  
Sbjct: 180 ADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWT 239

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV------- 297
            ++   VQ G    A+     +    V PN  T+  +ISG +     + G+Q+       
Sbjct: 240 TIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRR 299

Query: 298 --------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTF 338
                         M SK +QL  A  V       D++SW+++ISG     C +EAFD  
Sbjct: 300 GLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYL 359

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
             M  +G  P     +S+L  C + A + +GK++H   + +G+E +  V+SAL++MY+KC
Sbjct: 360 SWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKC 419

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVL 457
           G I EA  +FD+    N V+W +MI G A HGY  EAI+LF ++ +   + D ++F AVL
Sbjct: 420 GSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVL 479

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            AC H GLV+LG   FN + + ++I P  +HY CM+DLL RAGRL +A  MI++M  + D
Sbjct: 480 AACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRD 539

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             VW  LL AC+ HG+++  + AA+ + +L+P  A  ++ L ++YA  G
Sbjct: 540 DVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKG 588



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 178/412 (43%), Gaps = 75/412 (18%)

Query: 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV----- 280
           K G +  A+++FD+M+++D ++   ++SGYV     TEAL+L  ++    V+P +     
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMW---VEPGLHMDPF 69

Query: 281 --------------VTWNTLISGFSKSGD---QVMVSKLFQLMRAKGVEPD--------- 314
                         V++   + G+S   D    V V      M  K  + D         
Sbjct: 70  ILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEM 129

Query: 315 ----VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
               VVSWT++I+GLV    N EA   F +M  Q     + T SS L ACA +  +  G+
Sbjct: 130 PLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGR 189

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           EIH   +  G      V + L  MY KCG +     LF+ M++R+ V+W ++I      G
Sbjct: 190 EIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIG 249

Query: 431 YCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL----------------- 472
             + A++ F +M E     +  +F AV++ C  +G +E G++L                 
Sbjct: 250 QEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVAN 309

Query: 473 -----------FNMMQEKYKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTMSTE---P 516
                       ++    ++ + R +   ++ M+    + G   EA++ +  M  E   P
Sbjct: 310 SIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRP 369

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
           + F + ++L  C N   +E  +    H+    LE  +   + L+ ++Y+  G
Sbjct: 370 NEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALI-NMYSKCG 420


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 175/509 (34%), Positives = 274/509 (53%), Gaps = 40/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ GK LH+ L+ +G++        L+  Y +C +I  A  +F+   +TN+  W  +  A
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +     ++  +F +M   G+  N F  P +L+ C     I  GE+IHSL +K+ F +D
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESD 380

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V   LIDMYSK G ++KA+K+ + + ++D+V+  +M++GYVQ     EAL   +E+  
Sbjct: 381 MYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD 440

Query: 274 PRVKPN-----------------------------------VVTWNTLISGFSKSGDQVM 298
             V P+                                   +  WNTL++ +++ G    
Sbjct: 441 CGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEE 500

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              LF+ +  K    D ++W  +ISG   +    +A   F +M   G      T  S + 
Sbjct: 501 AFSLFREIEHK----DEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAIS 556

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ A++++GK++HG A+  G   +  V +AL+ +Y KCG I +A+ +F +MS RN V+
Sbjct: 557 ALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS 616

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I  C+ HG   EA++LF+QM +E  K + ++F  VL AC HVGLVE G   F  M 
Sbjct: 617 WNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             Y + P  +HYAC+VD+LGRAG+L  A   +  M    +  +W  LL ACK H NIE+ 
Sbjct: 677 NVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIG 736

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E+AAKHL ELEP  +A+ +LL++ YA  G
Sbjct: 737 ELAAKHLLELEPHDSASYVLLSNAYAVTG 765



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 234/489 (47%), Gaps = 36/489 (7%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P   S  +    + +    G+++HAQ+        T +   LI  Y    +   A  +F
Sbjct: 143 TPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVF 202

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
            ++   +   +  L   +A+ G+ + A+ +F EM + GL+ +   + S+L AC  + D+ 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G+++HS +LK     D     SL+D+Y KCG +E A  +F+     ++V  N M+  Y 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLI-----SGFSKSGDQV-------------- 297
           Q     ++  +  ++    + PN  T+  ++     +G  + G+Q+              
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLV-HNFCNDEAFDTFKEMLSQ 344
                  M SK   L +A+ +     + DVVSWTS+I+G V H+FC +EA  TFKEM   
Sbjct: 383 VSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFC-EEALATFKEMQDC 441

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           G  P +  ++S   ACA    MR+G +IH    V G   D+ + + LV++YA+CG   EA
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHV 463
            +LF ++  ++ +TWN +I G        +A+ +F +M +   K +  +F + ++A  ++
Sbjct: 502 FSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANL 561

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G+++      K      TE    ++ L G+ G + +A  +   MS   ++  W  
Sbjct: 562 ADIKQGKQVHGRAV-KTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV-SWNT 619

Query: 524 LLGACKNHG 532
           ++ +C  HG
Sbjct: 620 IITSCSQHG 628



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 214/458 (46%), Gaps = 34/458 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA  +V GL     I   LI  Y +   +  AR +F E+   +   W+A+   YA+ G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA  ++ +MH   +    +V+ SVL AC        G  IH+ V K +F ++ FV ++
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LI +Y   GS + A++VF +M+  D V  N ++SG+ Q G    AL + +E+    ++P+
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV--------HNFCN 331
            VT  +L++  +  GD     +L   +   G+  D ++  S++   V        H+  N
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 332 -----------------------DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
                                   ++F+ F +M + G  P   T   IL  C     +  
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIEL 364

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           G++IH  +I  G E D++V   L+DMY+K G + +AR + + + +R+ V+W SMI G   
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 429 HGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           H +C+EA+  F +M++     D++   +  +AC  +  +  G ++   +           
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADIS 483

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            +  +V+L  R GR  EA+ + + +    D   W  L+
Sbjct: 484 IWNTLVNLYARCGRSEEAFSLFREIE-HKDEITWNGLI 520



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 46/385 (11%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH+  +    G D  + + LID+Y+K G V +A++VF E+  +D V+  AM+SGY Q G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 260 LATEALNLVEE------IGTPRVKPNVVT-----------------------------WN 284
           L  EA  L  +      I TP V  +V++                              N
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
            LI+ +   G   +  ++F  M    +  D V++ ++ISG       + A   F EM   
Sbjct: 184 ALIALYLGFGSFKLAERVFCDM----LFCDRVTFNTLISGHAQCGHGECALQIFDEMQLS 239

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           G  P   T++S+L ACAS  ++++GK++H   +  G+  D     +L+D+Y KCG I  A
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETA 299

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV 463
             +F+     N V WN M+          ++ E+F QM+      +  ++  +L  C   
Sbjct: 300 HDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCT 359

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
           G +ELG+++ ++     K    ++ Y    ++D+  + G L +A ++++ M  + D+  W
Sbjct: 360 GQIELGEQIHSL---SIKNGFESDMYVSGVLIDMYSKYGCLDKARKILE-MLEKRDVVSW 415

Query: 522 GALLGACKNHGNIELAEIAAKHLSE 546
            +++     H   E A    K + +
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQD 440



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 109/203 (53%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A++ G  +HA++ VSG A    I   L+  Y  C     A  LF EI   +   W  L 
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLI 520

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + +   +++A+ VF +M   G K N+F   S + A  +L+DI  G+++H   +K    
Sbjct: 521 SGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHT 580

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++LI +Y KCGS+E AK +F EM  ++ V+ N +++   Q G   EAL+L +++
Sbjct: 581 SETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQM 640

Query: 272 GTPRVKPNVVTWNTLISGFSKSG 294
               +KPN VT+  +++  S  G
Sbjct: 641 KQEGLKPNDVTFIGVLAACSHVG 663



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 2/123 (1%)

Query: 350 SATISSILPACASAAN-MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           SA ++  L AC    N      EIH  ++V G+  D  + + L+D+YAK G + +AR +F
Sbjct: 42  SADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVF 101

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVE 467
            ++S R+ V+W +M+ G A  G   EA  L++QM     +      ++VL+AC    L  
Sbjct: 102 KELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFA 161

Query: 468 LGQ 470
            G+
Sbjct: 162 QGR 164


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 173/508 (34%), Positives = 278/508 (54%), Gaps = 36/508 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL  GK +H  +I  G    T I   +++ Y+    +  AR +FD     N+  W ++ 
Sbjct: 246 RALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSII 305

Query: 152 GAYARRGYHQEAVTVFHEMH-------------------IQGLKQNIFV----------- 181
            +YA  G    A  +F EM                    +QG  +N+             
Sbjct: 306 SSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFK 365

Query: 182 -----IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
                I S L+A   L     G++IH  +++     D +V +SL+DMY K   +EKA+ V
Sbjct: 366 PDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVV 425

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F     K+I A N+++SGY  +GL   A  L+ ++    +K ++VTWN+L+SG+S SG  
Sbjct: 426 FHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCS 485

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +   +++ G+ P+VVSWT++ISG   N    +A   F +M  +   P S TIS++
Sbjct: 486 EEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTL 545

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA  + +++G+EIH  ++  G   D+++ +AL+DMY+K G +  A  +F  + E+  
Sbjct: 546 LRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTL 605

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
             WN M+ G A +G+ +E   LF+ M +   + D ++FTA+L+ C + GLV  G + F+ 
Sbjct: 606 PCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDS 665

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M+  Y I P  EHY+CMVDLLG+AG L EA + I  M  + D  +WGA+L AC+ H +I+
Sbjct: 666 MKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIK 725

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYA 563
           +AEIAA++L  LEP ++AN +L+ ++Y+
Sbjct: 726 IAEIAARNLFRLEPYNSANYVLMMNIYS 753



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/517 (24%), Positives = 219/517 (42%), Gaps = 49/517 (9%)

Query: 19  LSMNDFYSIRRIYFALLSGTQLVLSC--SKSASDAGKP-LINGIFIEAHYKMPIISRSFH 75
           L   DF S  +++F   +   L+ +    + AS  G    I  +F E H       +   
Sbjct: 75  LEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELH------DKGVK 128

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
               A +  ++I +    L  G  +HA L+  G      ++  LI  Y +C  I  A  +
Sbjct: 129 FDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQV 188

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FDE P      W  +  A  R    ++A+ +   M     K     I  +L+ACG L  +
Sbjct: 189 FDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRAL 248

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G++IH  V++    ++  + +S++ MYS+   +E A+ VFD   + ++ + N+++S Y
Sbjct: 249 NEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSY 308

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
              G    A +L  E+ +  +KP+++TWN+L+SG    G    V    + +++ G +PD 
Sbjct: 309 AVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPD- 367

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
                                             S +I+S L A         GKEIHG 
Sbjct: 368 ----------------------------------SCSITSALQAVIELGYFNLGKEIHGY 393

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
            +   +E D++V ++LVDMY K   + +A  +F     +N   WNS+I G    G  D A
Sbjct: 394 IMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNA 453

Query: 436 IELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
            +L  QM EE  K D +++ ++++     G  E    + N ++    + P    +  M+ 
Sbjct: 454 EKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIK-SLGLTPNVVSWTAMIS 512

Query: 495 LLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGAC 528
              +     +A +    M  E   P+      LL AC
Sbjct: 513 GCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRAC 549



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 141/334 (42%), Gaps = 50/334 (14%)

Query: 264 ALNLVEE-----IGTPRVKPNVVTWN-TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            LN V E     I  P+ K N+VT + +++  + + GD    +K+F +    G   + + 
Sbjct: 43  TLNSVRELHAQMIKMPK-KGNLVTMDGSMMRNYLEFGDFESATKVFFV----GFARNYLL 97

Query: 318 WTSVISGLVHNFCND--EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           W S +     +F  D  E  + FKE+  +G    S  ++ +L  C +   +  G E+H C
Sbjct: 98  WNSFLEEFA-SFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHAC 156

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
            +  G + D+H+  AL+++Y KC  I  A  +FD+   +    WN+++         ++A
Sbjct: 157 LLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDA 216

Query: 436 IELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLF--------------------- 473
           +EL  +M+    K    +   +L AC  +  +  G+++                      
Sbjct: 217 LELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSM 276

Query: 474 ----NMMQEKYKIMPRTEH-----YACMVDLLGRAGRLAEAYEMIKTM---STEPDLFVW 521
               N ++    +   TE      +  ++      G L  A+++ + M   S +PD+  W
Sbjct: 277 YSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITW 336

Query: 522 GALLGACKNHGNIE--LAEIAAKHLSELEPESAA 553
            +LL      G+ E  L  I +   +  +P+S +
Sbjct: 337 NSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCS 370



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 16/237 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H   +  G      IAT LI  Y++   +  A  +F  I +  +  W  +   
Sbjct: 555 LKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMG 614

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFGT 212
           YA  G+ +E  T+F  M   G++ +     ++L  C +   +  G K   S+   +S   
Sbjct: 615 YAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINP 674

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
                S ++D+  K G +++A      M +K     +A + G V           + EI 
Sbjct: 675 TIEHYSCMVDLLGKAGFLDEALDFIHAMPQK----ADASIWGAVLAACRLHKDIKIAEIA 730

Query: 273 TP---RVKP----NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE-PDVVSWTSV 321
                R++P    N V    + S F + GD   V +L + M A GV+ P+V SW  V
Sbjct: 731 ARNLFRLEPYNSANYVLMMNIYSTFERWGD---VERLKESMTAMGVKIPNVWSWIQV 784


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 274/512 (53%), Gaps = 53/512 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           + AQ++  GL     +    IT       I  AR +FD+  + N   W A+   YA+   
Sbjct: 41  IQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANC 100

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           H + V +F  MH  G   N F  P V+K+C   +    GE++H +V K  F ++ FV  +
Sbjct: 101 HLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCA 160

Query: 220 LIDMYS---------------------------------KCGSVEKAKKVFDEMVEKDIV 246
           LI MYS                                  C  +  A+++FD   ++D+V
Sbjct: 161 LIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVV 220

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
             N +VSGY++ G    A  L + +       +V++WNT++SG++ +G+     KLF+ M
Sbjct: 221 LWNVVVSGYIELGDMVAARELFDRMP----DRDVMSWNTVLSGYATNGEVESFVKLFEEM 276

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML----------SQGFC-PTSATISS 355
             +    +V SW  +I G V N    EA + FK ML          S G   P   T+ +
Sbjct: 277 PVR----NVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVA 332

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L AC+   ++  GK +H  A  +G +G+L V +AL+DMYAKCG I +A  +FD +  ++
Sbjct: 333 VLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKD 392

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFN 474
            +TWN++I G A HG+  +A+ LF +M+   ++ D ++F  +L+AC H+GLV  G   F 
Sbjct: 393 IITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQ 452

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M + Y I+P+ EHY CMVDLLGRAG + +A ++++ M  EPD  +W ALLGAC+ + N+
Sbjct: 453 SMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNV 512

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           E+AE+A + L ELEP +  N ++++++Y + G
Sbjct: 513 EMAELALQRLIELEPNNPGNFVMVSNIYKDLG 544



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/400 (19%), Positives = 166/400 (41%), Gaps = 66/400 (16%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L+ CG    +    +I + ++ H    + +V  S I   ++ G + +A++VFD+  + 
Sbjct: 27  SLLRTCGTCVRL---HQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQP 83

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           +    NAM  GY Q     + + L   +      PN  T+  ++   + +       ++ 
Sbjct: 84  NGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVH 143

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFC------NDEAFDTFKEMLSQGFCPTSATISSIL 357
            ++  +G + +    T V   L+H +         +A+  F EM  +     +A +++ +
Sbjct: 144 CVVAKRGFKSN----TFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHV 199

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC    + RR          +  + D+ + + +V  Y + G +  AR LFD+M +R+ +
Sbjct: 200 -ACRDMVSARR-------LFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVM 251

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEER-------------------------KKL---- 448
           +WN+++ G A +G  +  ++LF +M  R                         K++    
Sbjct: 252 SWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLV 311

Query: 449 --------------DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
                         +  +  AVLTAC  +G +E+G +  ++  E             ++D
Sbjct: 312 EGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMG-KWVHVYAESIGYKGNLFVGNALID 370

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
           +  + G + +A ++   +  + D+  W  ++     HG++
Sbjct: 371 MYAKCGVIEKALDVFDGLDVK-DIITWNTIINGLAMHGHV 409



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 93/202 (46%), Gaps = 18/202 (8%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L  C +   +    +I    +  G+EG+ +V  + +   A+ G I  AR +FDK ++ 
Sbjct: 27  SLLRTCGTCVRLH---QIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQP 83

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLF 473
           N  TWN+M  G A      + + LF +M       +  +F  V+ +C      + G+ + 
Sbjct: 84  NGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVH 143

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGR--LAEAYEMIKTMSTEPDLFVWGALLG---AC 528
            ++ ++      T     ++ +    G   +A+AY++   M  + ++F W A++    AC
Sbjct: 144 CVVAKR-GFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMR-DKNVFAWTAIVAAHVAC 201

Query: 529 KNHGNIELAEIAAKHLSELEPE 550
           ++        ++A+ L +L P+
Sbjct: 202 RDM-------VSARRLFDLAPQ 216


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 256/469 (54%), Gaps = 36/469 (7%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H      G+     +   LI  Y +C+ +  AR +FD++   ++  W +L+  Y + 
Sbjct: 184 KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 243

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+ ++ + VF EM   G+K N   + S+L AC  L D+ +G++IH   ++H    + FV 
Sbjct: 244 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVC 303

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           S+L+ +Y+KC SV +A+ VFD M  +D                                 
Sbjct: 304 SALVSLYAKCLSVREARMVFDLMPHRD--------------------------------- 330

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             VV+WN +++ + K+ +      LF  M   GV  D  +W +VI G + N  ++EA + 
Sbjct: 331 --VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 388

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F++M   GF P   TISSILPAC+ + N+R GKEIH         GDL   +AL+ MYAK
Sbjct: 389 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 448

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAV 456
           CG ++ +R +FD M  ++ V WN+MI   A HG   EA+ LF++M   R + + ++FT V
Sbjct: 449 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 508

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L+ C H  LVE G ++FN M   + + P   HY+C+VD+  RAGRL EAY+ I+ M  EP
Sbjct: 509 LSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEP 568

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
               WGALL AC+ + N+ELA+I+AK L E+EP +  N + L ++   A
Sbjct: 569 TASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTA 617



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 178/401 (44%), Gaps = 71/401 (17%)

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LI +    G   +A+++FD + + D    + ++S     GL+ EA+ +   +    +KP+
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQ----------------LMRAKG------------- 310
           +  +       + SGD + V ++                  L+ A G             
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 311 --VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
             V  DVVSWTS+ S  V      +  D F+EM   G  P   T+SSILPACA   +++ 
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV----------- 417
           GKEIHG A+  G+  +L V SALV +YAKC  + EAR +FD M  R+ V           
Sbjct: 284 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 343

Query: 418 ------------------------TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
                                   TWN++I GC  +G  +EA+E+F +M++   K + ++
Sbjct: 344 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 403

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
            +++L AC     + +G+ +   +   +K+   T   A ++ +  + G L  +  +   M
Sbjct: 404 ISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTA-LLYMYAKCGDLNLSRNVFDMM 462

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKH--LSELEPES 551
             + D+  W  ++ A   HGN + A        LS ++P S
Sbjct: 463 RRK-DVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNS 502



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           H+   L+ +    G  + AR LFD + + +  T +++I     HG  +EAI++++ ++ER
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 158

Query: 446 K-KLDHLSFTAVLTACCHVG 464
             K D   F A   AC   G
Sbjct: 159 GIKPDMPVFLAAAKACAVSG 178


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 167/504 (33%), Positives = 276/504 (54%), Gaps = 41/504 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H  ++  G    T +   LI  Y +   +  A  LFDE+ + ++  W ++       
Sbjct: 215 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 274

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+    + +F +M I G++ ++  + SVL AC ++ ++  G  +H   +K  F  +    
Sbjct: 275 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFS 334

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L+DMYSKCG++  A +VF +M +  IV+  ++++ YV+ GL ++A+ L +E+ +  V+
Sbjct: 335 NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVR 394

Query: 278 PNVVT-----------------------------------WNTLISGFSKSGDQVMVSKL 302
           P++ T                                    N LI+ ++K G       +
Sbjct: 395 PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 454

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  +  K    D+VSW ++I G   N   +EA + F +M  Q F P   T++ +LPACA 
Sbjct: 455 FSKIPVK----DIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAG 509

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A + +G+EIHG  +  G   DLHV  ALVDMYAKCG +  A+ LFD + +++ ++W  M
Sbjct: 510 LAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVM 569

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G   HG+ +EAI  FN+M     + D  SF+A+L AC H GL+  G + FN M+ +  
Sbjct: 570 IAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECG 629

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + P+ EHYAC+VDLL R G L++AY+ I++M  +PD  +WG LL  C+ H +++LAE  A
Sbjct: 630 VEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVA 689

Query: 542 KHLSELEPESAANNMLLTDLYANA 565
           +H+ ELEP++    ++L ++YA A
Sbjct: 690 EHIFELEPDNTRYYVVLANVYAEA 713



 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/528 (28%), Positives = 272/528 (51%), Gaps = 47/528 (8%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S+S+ L   +Y   +++    ++L+ GK +H+ +I +G++    +  KL+  Y  C ++ 
Sbjct: 87  SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLV 146

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
             R +FD+I    +  W  L   YA+ G  +E+V++F +M   G+  N +    VLK   
Sbjct: 147 QGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFA 206

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            L  +   +++H  VLK  FG++  VV+SLI  Y K G VE A  +FDE+ E D+V+ N+
Sbjct: 207 ALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNS 266

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------------------------- 283
           M++G V  G +   L +  ++    V+ ++ T                            
Sbjct: 267 MINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKAC 326

Query: 284 --------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                   NTL+  +SK G+    +++F  M     +  +VSWTS+I+  V      +A 
Sbjct: 327 FSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG----DTTIVSWTSIIAAYVREGLYSDAI 382

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F EM S+G  P   T++SI+ ACA ++++ +G+++H   I  G+  +L V +AL++MY
Sbjct: 383 GLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMY 442

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455
           AKCG + EAR +F K+  ++ V+WN+MI G + +   +EA+ELF  M+++ K D ++   
Sbjct: 443 AKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMAC 502

Query: 456 VLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEMIKTMS 513
           VL AC  +  ++ G+ +  ++++  Y       H AC +VD+  + G L  A +++  M 
Sbjct: 503 VLPACAGLAALDKGREIHGHILRRGY---FSDLHVACALVDMYAKCGLLVLA-QLLFDMI 558

Query: 514 TEPDLFVWGALLGACKNH--GNIELAEIAAKHLSELEPESAANNMLLT 559
            + DL  W  ++     H  GN  ++      ++ +EP+ ++ + +L 
Sbjct: 559 PKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILN 606



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 126/231 (54%), Gaps = 2/231 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ +H+ +I +G+     +   LI  Y +C ++  AR++F +IP  +I  W  + G
Sbjct: 412 SLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 471

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++     EA+ +F +M  Q  K +   +  VL AC  L+ +  G +IH  +L+  + +
Sbjct: 472 GYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS 530

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V  +L+DMY+KCG +  A+ +FD + +KD+++   M++GY   G   EA++   E+ 
Sbjct: 531 DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 590

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVI 322
              ++P+  +++ +++  S SG      K F  MR + GVEP +  +  V+
Sbjct: 591 IAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVV 641


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 279/508 (54%), Gaps = 40/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H  L+ SG +      T L   Y +C+ +H AR +FD +P+ ++  W  +   
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAG 210

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y++ G  + A+ + + M  + LK +   I SVL A   L  I  G++IH   ++  F + 
Sbjct: 211 YSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSL 270

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + ++L+DMY+KCGS++ A+ +FD M+E+++V+ N+M+  YVQ     EA+ + +++  
Sbjct: 271 VNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLD 330

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
             VKP                                   NV   N+LIS + K  +   
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDT 390

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            + +F  ++++     +VSW ++I G   N    EA + F +M ++   P + T  S++ 
Sbjct: 391 AASMFGKLQSR----TIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVIT 446

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  +     K IHG  +   ++ ++ V +ALVDMYAKCG I  AR +FD MSER+  T
Sbjct: 447 AIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G   HG    A+ELF +M++   + + ++F +V++AC H GLVE G + F+MM+
Sbjct: 507 WNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMK 566

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E Y I P  +HY  MVDLLGRAGRL EA++ I  M  +P + V+GA+LGAC+ H N+  A
Sbjct: 567 ENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANA 565
           E  A+ L EL PE    ++LL ++Y  A
Sbjct: 627 EKVAERLFELNPEDGGYHVLLANIYRAA 654



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 230/459 (50%), Gaps = 36/459 (7%)

Query: 107 SGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALTGAYARRGYHQEAVT 165
           +GL +     TKL++ +    ++  A  +F+ I K  N+  +  L G +A+     +A+ 
Sbjct: 63  NGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKG-FAKVSDLDKALK 121

Query: 166 VFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYS 225
            F  M    ++  ++    +LK CG  +++  G++IH L++K  F  D F ++ L +MY+
Sbjct: 122 FFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYA 181

Query: 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT 285
           KC  V +A+KVFD M E+D+V+ N +V+GY Q G+A  AL +V  +    +KP+ +T  +
Sbjct: 182 KCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVS 241

Query: 286 LISGFS----------------KSGDQVMVS---------------KLFQLMRAKGVEPD 314
           ++   S                ++G   +V+               K  +L+    +E +
Sbjct: 242 VLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERN 301

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           VVSW S+I   V N    EA   F++ML +G  PT  ++   L ACA   ++ RG+ IH 
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHK 361

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
            ++ + ++ ++ V ++L+ MY KC  +  A ++F K+  R  V+WN+MI G A +G   E
Sbjct: 362 LSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIE 421

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A+  F+QM+ R  K D  ++ +V+TA   + +    + +  ++     +         +V
Sbjct: 422 ALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC-LDKNVFVTTALV 480

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           D+  + G +  A  +I  M +E  +  W A++     HG
Sbjct: 481 DMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHG 518



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 170/375 (45%), Gaps = 41/375 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R ++ GK +H   + +G   L  IAT L+  Y +C ++  AR+LFD + + N+  W ++ 
Sbjct: 250 RLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMI 309

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AY +    +EA+ +F +M  +G+K     +   L AC  L D+  G  IH L ++    
Sbjct: 310 DAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELD 369

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  VV+SLI MY KC  V+ A  +F ++  + IV+ NAM+ G+ Q G   EALN   ++
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM 429

Query: 272 GTPRVKPNVVTWNTLISG-----------------------------------FSKSGDQ 296
               VKP+  T+ ++I+                                    ++K G  
Sbjct: 430 QARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAI 489

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           ++   +F +M     E  V +W ++I G   +     A + F+EM      P   T  S+
Sbjct: 490 MIARLIFDMMS----ERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSV 545

Query: 357 LPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           + AC+ +  +  G K  H       +E  +    A+VD+  + G ++EA     +M  + 
Sbjct: 546 ISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKP 605

Query: 416 TVT-WNSMIFGCANH 429
            V  + +M+  C  H
Sbjct: 606 AVNVYGAMLGACQIH 620


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 263/510 (51%), Gaps = 71/510 (13%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP------------ 140
           A + GK +H    VSGL     +   +   Y  C  +  AR +FD +             
Sbjct: 131 AFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLC 190

Query: 141 -----------------------KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
                                  + NI  W  +   + R GYH+EAV +F ++H  G   
Sbjct: 191 AYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCP 250

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +   + SVL + G    +  G  IH  V+K     D  V+S++IDMY K G V     +F
Sbjct: 251 DQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLF 310

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           ++    +    NA ++G  + GL  +AL                                
Sbjct: 311 NQFEMMEAGVCNAYITGLSRNGLVDKAL-------------------------------- 338

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F+L + + +E +VVSWTS+I+G   N  + EA + F+EM   G  P   TI S+L
Sbjct: 339 ---EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           PAC + A +  G+  HG A+ + +  ++HV SAL+DMYAKCG I+ ++ +F+ M  +N V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455

Query: 418 TWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WNS++ G + HG   E + +F   M  R K D +SFT++L+AC  VGL + G + F MM
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            E+Y I PR EHY+CMV+LLGRAG+L EAY++IK M  EPD  VWGALL +C+   N++L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AEIAA+ L  LEPE+    +LL+++YA  G
Sbjct: 576 AEIAAEKLFHLEPENPGTYVLLSNIYAAKG 605



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 213/468 (45%), Gaps = 73/468 (15%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           HA+++ SG      I+ KLI  Y+     + A ++   IP   I+ + +L  A  +    
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
            +++ VF  M   GL  +  V+P++ K C  LS    G++IH +        DAFV  S+
Sbjct: 98  TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
             MY +CG +  A+KVFD M +KD+V  +A++  Y ++G   E + ++ E+ +  ++ N+
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI 217

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           V+WN ++SGF++SG       +FQ +   G  PD V                        
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQV------------------------ 253

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
                      T+SS+LP+   +  +  G+ IHG  I  G+  D  V SA++DMY K G 
Sbjct: 254 -----------TVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGH 302

Query: 401 ISEARTLFDKMS-----------------------------------ERNTVTWNSMIFG 425
           +    +LF++                                     E N V+W S+I G
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
           CA +G   EA+ELF +M+    K +H++  ++L AC ++  +  G R  +    +  ++ 
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLD 421

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                + ++D+  + GR+  +  +   M T+ +L  W +L+     HG
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHG 468


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 173/509 (33%), Positives = 276/509 (54%), Gaps = 40/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK LH+ L+ +G++    I   L+  Y +C  I  A  +F    +TN+  W  +  A
Sbjct: 260 LNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVA 319

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +     ++  +F +M   G++ N F  P +L+ C +  +I  GE+IH L +K  F +D
Sbjct: 320 YGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESD 379

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V   LIDMYSK G ++KA+++ + +  KD+V+  +M++GYVQ     EAL   +++  
Sbjct: 380 MYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQL 439

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
             + P                                   +V  WN L++ +++ G    
Sbjct: 440 FGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKE 499

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              LF+ +  K    D ++W  ++SG   +   +EA + F +M   G      T  S + 
Sbjct: 500 AFSLFEAIEHK----DKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSIS 555

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ A++++GK+IH   I  G   +  V +AL+ +Y KCG I +A+  F +MSERN V+
Sbjct: 556 ASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVS 615

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I  C+ HG+  EA++LF+QM +E  K + ++F  VL AC HVGLVE G   F  M 
Sbjct: 616 WNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMS 675

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            ++ I PR +HYAC+VD+LGRAG+L  A + ++ M    +  VW  LL AC+ H NIE+ 
Sbjct: 676 SEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIG 735

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E+AAK+L ELEP  +A+ +LL++ YA  G
Sbjct: 736 ELAAKYLLELEPHDSASYVLLSNAYAVTG 764



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 241/489 (49%), Gaps = 36/489 (7%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P   S  +    +    + G+++HAQ+   G    T +   LI  Y    ++  A  +F
Sbjct: 142 TPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVF 201

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
            E+P  +   +  L   +A+ G  + A+ +F EM + G   +   I S+L AC  + D+ 
Sbjct: 202 SEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLN 261

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G+++HS +LK     D  +  SL+D+Y KCG + +A ++F      ++V  N M+  Y 
Sbjct: 262 KGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYG 321

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLI-----SGFSKSGDQV-------------- 297
           Q     ++ +L  ++    V+PN  T+  L+     +G    G+Q+              
Sbjct: 322 QISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMY 381

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLV-HNFCNDEAFDTFKEMLSQ 344
                  M SK   L +A+ +       DVVSWTS+I+G V H FC  EA +TFK+M   
Sbjct: 382 VSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCK-EALETFKDMQLF 440

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           G  P +  ++S + ACA    MR+G++IH    V G   D+ + +ALV++YA+CG   EA
Sbjct: 441 GIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEA 500

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV 463
            +LF+ +  ++ +TWN M+ G A  G  +EA+E+F +M +   K +  +F + ++A  ++
Sbjct: 501 FSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANL 560

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G+++   +  K      TE    ++ L G+ G + +A      MS E +   W  
Sbjct: 561 ADIKQGKQIHATVI-KTGCTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNT 618

Query: 524 LLGACKNHG 532
           ++ +C  HG
Sbjct: 619 IITSCSQHG 627



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 218/473 (46%), Gaps = 38/473 (8%)

Query: 99  ILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           ++HA+ I  GL         LI  Y +   +  AR +F+++   +   W+A+   YAR G
Sbjct: 63  VIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
             +EAV ++H+MH  G+    +V+ SVL AC   +    G  +H+ V K    ++  V +
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +LI +Y + GS+  A++VF EM   D V  N ++S + Q G    AL + EE+      P
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD------------------------ 314
           + VT  +L++  +  GD     +L   +   G+ PD                        
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIF 302

Query: 315 -------VVSWT--SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                  VV W    V  G + +    ++FD F +M++ G  P   T   +L  C  A  
Sbjct: 303 KSGDRTNVVLWNLMLVAYGQISDLA--KSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G++IH  +I  G E D++V   L+DMY+K G++ +AR + + +  ++ V+W SMI G
Sbjct: 361 INLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAG 420

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              H +C EA+E F  M+      D++   + ++AC  +  +  GQ++ + +        
Sbjct: 421 YVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVS-GYSA 479

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
               +  +V+L  R GR  EA+ + + +    D   W  ++      G  E A
Sbjct: 480 DVSIWNALVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMVSGFAQSGLYEEA 531



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 145/283 (51%), Gaps = 10/283 (3%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A++ G+ +H+++ VSG +    I   L+  Y  C     A  LF+ I   +   W  + 
Sbjct: 460 KAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMV 519

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +A+ G ++EA+ VF +M+  G+K N+F   S + A  +L+DI  G++IH+ V+K    
Sbjct: 520 SGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCT 579

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++LI +Y KCGS+E AK  F EM E++ V+ N +++   Q G   EAL+L +++
Sbjct: 580 SETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQM 639

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
               +KPN VT+  +++  S  G        F+ M ++ G+ P    +  V+  L     
Sbjct: 640 KQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQ 699

Query: 331 NDEAFDTFKEMLSQGFCPTSATI---SSILPACASAANMRRGK 370
            D A    +EM      P SA      ++L AC    N+  G+
Sbjct: 700 LDRARKFVEEM------PVSANAMVWRTLLSACRVHKNIEIGE 736


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 279/509 (54%), Gaps = 33/509 (6%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R ++    K LHAQ I +     T  A+ +I+ YT  + +H A ++F  +    +  W +
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLVFKTLESPPVLAWKS 75

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   +  +     A+  F EM   G   +  V PSVLK+C  + D+  GE +H  +++  
Sbjct: 76  VIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG 135

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D +  ++L++MYSK   ++  +KVF+ M  KD+V+ N +++GY Q G+  +AL +V 
Sbjct: 136 MDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVR 195

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-------------- 315
           E+GT  +KP+  T ++++  FS+  D +   ++   +  KG++ DV              
Sbjct: 196 EMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSA 255

Query: 316 -----------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
                            +SW S+++G V N   +EA   F++M+S    P +   SS++P
Sbjct: 256 RIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIP 315

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA  A +  GK++HG  +  G   ++ + SALVDMY+KCG I  AR +FD+M+  + V+
Sbjct: 316 ACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVS 375

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W ++I G A HG+  EA+ LF +M+ +  K + ++F AVLTAC HVGLV+     FN M 
Sbjct: 376 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 435

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y +    EHYA + DLLGRAG+L EAY+ I  M  EP   VW  LL +C  H N+ELA
Sbjct: 436 KVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELA 495

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E  A+ +  ++ E+    +L+ ++YA+ G
Sbjct: 496 EKVAEKIFTIDSENMGAYVLMCNMYASNG 524



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 163/335 (48%), Gaps = 7/335 (2%)

Query: 76  LSPAAY--SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
           L P A+  S  + I+     +  GK +H  +I  G+     I + L+  Y +   I  + 
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 261

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
            +F  + + +   W +L   Y + G + EA+ +F +M    ++       SV+ AC HL+
Sbjct: 262 RVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLA 321

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
            +  G+++H  VL+  FG + F+ S+L+DMYSKCG+++ A+K+FD M   D V+  A++ 
Sbjct: 322 TLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIM 381

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVE 312
           G+   G   EA++L EE+    VKPN V +  +++  S  G        F  M +  G+ 
Sbjct: 382 GHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLN 441

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            ++  + +V   L      +EA+D   +M  +   PT +  S++L +C+   N+   +++
Sbjct: 442 QELEHYAAVADLLGRAGKLEEAYDFISKMRVE---PTGSVWSTLLSSCSVHKNLELAEKV 498

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
                 +  E ++     + +MYA  G   E   L
Sbjct: 499 AEKIFTIDSE-NMGAYVLMCNMYASNGRWKEMAKL 532


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 188/546 (34%), Positives = 282/546 (51%), Gaps = 76/546 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIA 149
           ++ Q+ K +H+Q+I +GL       +KLI F   +   N+ +A +LF+ I + N   W  
Sbjct: 43  KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNT 102

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +    +       A+  +  M + G++ N +  P +LK+C  +     G++IH  VLK  
Sbjct: 103 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLG 162

Query: 210 FGTDAFVVSSLIDMYSKCGSV-------------------------------EKAKKVFD 238
             +D FV +SLI+MY++ G +                               + A+++F+
Sbjct: 163 LESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFE 222

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------------------- 279
           E+  +D V+ NAM++GY Q G   EAL   +E+    V PN                   
Sbjct: 223 EIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLEL 282

Query: 280 ---VVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
              V +W             N LI  +SK GD      LF+ +     E D++SW  +I 
Sbjct: 283 GNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI----CEKDIISWNVMIG 338

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMGV 381
           G  H     EA   F++M      P   T  SILPACA    +  GK IH       +G+
Sbjct: 339 GYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGL 398

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             +  + ++L+DMYAKCG I  A+ +F  M  ++  +WN+MI G A HG+ + A+ELF Q
Sbjct: 399 T-NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQ 457

Query: 442 M-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M +E  + D ++F  VL+AC H GLVELG++ F+ M E Y I P+ +HY CM+DLLGRAG
Sbjct: 458 MRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAG 517

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
              EA  ++K M  +PD  +WG+LLGAC+ HGN+EL E AAKHL ELEPE+    +LL++
Sbjct: 518 LFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSN 577

Query: 561 LYANAG 566
           +YA AG
Sbjct: 578 IYATAG 583



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 215/487 (44%), Gaps = 76/487 (15%)

Query: 1   MTYRSCLFPIRDKPFQF---------TLSMNDFYSIRRIYFALLSGTQ--------LVLS 43
           ++Y   LF   ++P QF         +LS +   +I      LL G +        L+ S
Sbjct: 82  LSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKS 141

Query: 44  CSK-SASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHA 102
           C+K  A+  GK       I  H    ++       P  ++  I +Y      Q+G++ +A
Sbjct: 142 CAKVGATQEGKQ------IHGH----VLKLGLESDPFVHTSLINMYA-----QNGELGYA 186

Query: 103 QLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQ 161
           +L+ S  +    ++ T LIT YT    +  AR LF+EIP  +   W A+   YA+ G  +
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
           EA+  F EM    +  N   + +VL AC     +  G  + S +  H  G++  +V++LI
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306

Query: 222 DMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281
           DMYSKCG ++KA+ +F+ + EKDI++ N M+ GY       EAL L  ++    V+PN V
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366

Query: 282 T------------------------------------WNTLISGFSKSGDQVMVSKLFQL 305
           T                                    W +LI  ++K G+     ++F  
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG 426

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M+ K +     SW ++ISGL  +   + A + F++M  +GF P   T   +L AC+ A  
Sbjct: 427 MKPKSLG----SWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482

Query: 366 MRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNSMI 423
           +  G++     +    +   L     ++D+  + G   EA  L   M  + +   W S++
Sbjct: 483 VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542

Query: 424 FGCANHG 430
             C  HG
Sbjct: 543 GACRVHG 549



 Score = 38.5 bits (88), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF--ISEARTLFDKMS 412
           ++L  C S  N+   K+IH   I  G+       S L++  A   F  +S A  LF+ + 
Sbjct: 37  TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQR 471
           + N   WN+MI G +       AI+ + +M     + +  +F  +L +C  VG  + G++
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 472 L 472
           +
Sbjct: 154 I 154


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 256/469 (54%), Gaps = 36/469 (7%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H      G+     +   LI  Y +C+ +  AR +FD++   ++  W +L+  Y + 
Sbjct: 98  KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC 157

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+ ++ + VF EM   G+K N   + S+L AC  L D+ +G++IH   ++H    + FV 
Sbjct: 158 GFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVC 217

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           S+L+ +Y+KC SV +A+ VFD M  +D                                 
Sbjct: 218 SALVSLYAKCLSVREARMVFDLMPHRD--------------------------------- 244

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             VV+WN +++ + K+ +      LF  M   GV  D  +W +VI G + N  ++EA + 
Sbjct: 245 --VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 302

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F++M   GF P   TISSILPAC+ + N+R GKEIH         GDL   +AL+ MYAK
Sbjct: 303 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 362

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAV 456
           CG ++ +R +FD M  ++ V WN+MI   A HG   EA+ LF++M   R + + ++FT V
Sbjct: 363 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 422

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L+ C H  LVE G ++FN M   + + P   HY+C+VD+  RAGRL EAY+ I+ M  EP
Sbjct: 423 LSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEP 482

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
               WGALL AC+ + N+ELA+I+AK L E+EP +  N + L ++   A
Sbjct: 483 TASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTA 531



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 178/401 (44%), Gaps = 71/401 (17%)

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LI +    G   +A+++FD + + D    + ++S     GL+ EA+ +   +    +KP+
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQ----------------LMRAKG------------- 310
           +  +       + SGD + V ++                  L+ A G             
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 311 --VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
             V  DVVSWTS+ S  V      +  D F+EM   G  P   T+SSILPACA   +++ 
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV----------- 417
           GKEIHG A+  G+  +L V SALV +YAKC  + EAR +FD M  R+ V           
Sbjct: 198 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 257

Query: 418 ------------------------TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
                                   TWN++I GC  +G  +EA+E+F +M++   K + ++
Sbjct: 258 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 317

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
            +++L AC     + +G+ +   +   +K+   T   A ++ +  + G L  +  +   M
Sbjct: 318 ISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTA-LLYMYAKCGDLNLSRNVFDMM 376

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKH--LSELEPES 551
             + D+  W  ++ A   HGN + A        LS ++P S
Sbjct: 377 RRK-DVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNS 416



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 146/318 (45%), Gaps = 45/318 (14%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L+SGK +H   +  G+     + + L++ Y +C ++  ARM+FD +P  ++  W  + 
Sbjct: 193 KDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 252

Query: 152 GAYAR-----------------------------------RGYHQEAVTVFHEMHIQGLK 176
            AY +                                    G  +EAV +F +M   G K
Sbjct: 253 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 312

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            N   I S+L AC    ++  G++IH  V +H    D    ++L+ MY+KCG +  ++ V
Sbjct: 313 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 372

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FD M  KD+VA N M+      G   EAL L +++   RV+PN VT+  ++SG S S   
Sbjct: 373 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSR-- 430

Query: 297 VMVSKLFQLMRAKG----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            +V +  Q+  + G    VEPD   ++ V+         +EA+   + M  +   PT++ 
Sbjct: 431 -LVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPME---PTASA 486

Query: 353 ISSILPACASAANMRRGK 370
             ++L AC    N+   K
Sbjct: 487 WGALLAACRVYKNVELAK 504



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           H+   L+ +    G  + AR LFD + + +  T +++I     HG  +EAI++++ ++ER
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 72

Query: 446 K-KLDHLSFTAVLTACCHVG 464
             K D   F A   AC   G
Sbjct: 73  GIKPDMPVFLAAAKACAVSG 92


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 177/509 (34%), Positives = 270/509 (53%), Gaps = 40/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L SG  LH   +  GL     +A  L++ Y +CQ +  A  LF  +P+ ++  W  +   
Sbjct: 264 LLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISG 323

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             + G   +A+ +F +M   GL+ +   + S+L A   L+    G++IH  ++++    D
Sbjct: 324 CVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVD 383

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F+VS+L+D+Y KC  V  A+ VFD     D+V  + M+SGYV   ++  A+ +   +  
Sbjct: 384 VFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLA 443

Query: 274 PRVKPNVV-----------------------------------TWNTLISGFSKSGDQVM 298
             +KPN V                                     + L+  +SK G   +
Sbjct: 444 LGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDL 503

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              +F  M AK    D V+W S+IS    N   +EA D F++M+ +G    + TISSIL 
Sbjct: 504 SHYMFSKMSAK----DEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILS 559

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA    +  GKEIHG  I   +  DL   SAL+DMY KCG +  A  +F+ M E+N V+
Sbjct: 560 ACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVS 619

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I     HG   E+++L   M+E   K DH++F A+++AC H G V+ G RLF  M 
Sbjct: 620 WNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMT 679

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E+Y I P+ EH +CMVDL  RAG+L +A + I  M  +PD  +WGALL AC+ H N+ELA
Sbjct: 680 EEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELA 739

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           EIA++ L +L+P +    +L++++ A AG
Sbjct: 740 EIASQELFKLDPHNCGYYVLMSNINAVAG 768



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 244/477 (51%), Gaps = 38/477 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+++H      GL R   + + LI  Y +   +  AR +FD + + +   W  +  
Sbjct: 162 ALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMD 221

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G    AV +F  M   G   N   +   L  C   +D+ +G ++H+L +K+    
Sbjct: 222 GYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEP 281

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++L+ MY+KC  +E+A ++F  M   D+V  N M+SG VQ GL  +AL L  ++ 
Sbjct: 282 EVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQ 341

Query: 273 TPRVKPNVVTWNTLISGFS-----KSGDQV--------------MVSKLFQL-MRAKGVE 312
              ++P+ VT  +L+   +     K G ++              +VS L  +  + + V 
Sbjct: 342 KSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVR 401

Query: 313 P-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                       DVV  +++ISG V N  ++ A   F+ +L+ G  P +  ++S LPACA
Sbjct: 402 MAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACA 461

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S A MR G+E+HG  +    EG  +V SAL+DMY+KCG +  +  +F KMS ++ VTWNS
Sbjct: 462 SMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNS 521

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI   A +G  +EA++LF QM  E  K ++++ +++L+AC  +  +  G+ +  ++    
Sbjct: 522 MISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGII---I 578

Query: 481 KIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           K   R + +A   ++D+ G+ G L  A  + + M  E +   W +++ A   HG ++
Sbjct: 579 KGPIRADLFAESALIDMYGKCGNLELALRVFEHM-PEKNEVSWNSIISAYGAHGLVK 634



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 139/544 (25%), Positives = 236/544 (43%), Gaps = 58/544 (10%)

Query: 41  VLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIR----DRALQS 96
           +L C +S     +  ++  F E        S + + SP AY  R+   +R       L  
Sbjct: 3   LLRCRRSFKPPPRKWLSAAFSET------ASSATNASPCAY--RLLALLRGCVAPSHLPL 54

Query: 97  GKILHAQLIVSGLARLT-----QIATKLITFYTECQNIHHARMLFDEIPKTNIHR---WI 148
           G  +HA+ + SGL          + T+L+  Y   +    A  +F  +P+        W 
Sbjct: 55  GLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWN 114

Query: 149 ALTGAYARRGYHQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
            L   +   G+H+ AV  + +M  H    + +   +P V+K+C  L  +  G  +H    
Sbjct: 115 WLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTR 174

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
                 D +V S+LI MY+  G ++ A++VFD M E+D V  N M+ GYV+ G    A+ 
Sbjct: 175 ALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVG 234

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP------------- 313
           L   +      PN  T    +S  +   D +   +L  L    G+EP             
Sbjct: 235 LFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYA 294

Query: 314 ------------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                             D+V+W  +ISG V N   D+A   F +M   G  P S T++S
Sbjct: 295 KCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLAS 354

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +LPA       ++GKEIHG  +      D+ + SALVD+Y KC  +  A+ +FD     +
Sbjct: 355 LLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSID 414

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V  ++MI G   +   + A+++F  +     K + +   + L AC  +  + +GQ L  
Sbjct: 415 VVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHG 474

Query: 475 -MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            +++  Y+   R    + ++D+  + GRL  ++ M   MS + D   W +++ +   +G 
Sbjct: 475 YVLKNAYE--GRCYVESALMDMYSKCGRLDLSHYMFSKMSAK-DEVTWNSMISSFAQNGE 531

Query: 534 IELA 537
            E A
Sbjct: 532 PEEA 535



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 142/269 (52%), Gaps = 4/269 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G+ LH  ++ +       + + L+  Y++C  +  +  +F ++   +   W ++  
Sbjct: 465 AMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMIS 524

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           ++A+ G  +EA+ +F +M ++G+K N   I S+L AC  L  I  G++IH +++K     
Sbjct: 525 SFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRA 584

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  S+LIDMY KCG++E A +VF+ M EK+ V+ N+++S Y   GL  E+++L+  + 
Sbjct: 585 DLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQ 644

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
               K + VT+  LIS  + +G      +LF+ M  +  +EP V   + ++         
Sbjct: 645 EEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKL 704

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPAC 360
           D+A     +M    F P +    ++L AC
Sbjct: 705 DKAMQFIADM---PFKPDAGIWGALLHAC 730



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 110/283 (38%), Gaps = 36/283 (12%)

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           + WN LI GF+ +G   +    +  M A    P                           
Sbjct: 111 LPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPR-------------------------- 144

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
                  P   T+  ++ +CA+   +  G+ +H     +G++ D++V SAL+ MYA  G 
Sbjct: 145 -------PDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGL 197

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460
           +  AR +FD M ER+ V WN M+ G    G    A+ LF  M       + +  A   + 
Sbjct: 198 LDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSV 257

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
           C      L     + +  KY + P       +V +  +   L EA+ +   M  + DL  
Sbjct: 258 CAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRD-DLVT 316

Query: 521 WGALLGACKNHGNIE--LAEIAAKHLSELEPESAANNMLLTDL 561
           W  ++  C  +G ++  L        S L+P+S     LL  L
Sbjct: 317 WNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPAL 359


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 280/508 (55%), Gaps = 36/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ LH+ +I         +   L+  Y +C  +  AR  F+ I   +   W A+   
Sbjct: 466 LEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVG 525

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +     EA  +F  M + G+  +   + S+L  C +L  +  GE++H  ++K    T 
Sbjct: 526 YVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTC 585

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +  SSLIDMY KCG++E A+ VF  M  + +V+MNA+++GY Q  L  EA++L +E+  
Sbjct: 586 LYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL-VEAIDLFQEMQN 644

Query: 274 PRVKPNVVTWNTLIS---------------------GFSKSGDQVMVSKLFQLMRA-KGV 311
             + P+ +T+ +L+                      G    GD + VS L   M + +  
Sbjct: 645 EGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKT 704

Query: 312 EPDV-----------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           + D+           + WT++ISG   N C++EA   ++EM      P  AT +S+L AC
Sbjct: 705 DADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRAC 764

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV-TW 419
           +  A++  G+ IH     +G++ D    SA+VDMYAKCG +  +  +F++M  +N V +W
Sbjct: 765 SILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISW 824

Query: 420 NSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSMI G A +GY + A+++F++M+  R + D ++F  VLTAC H G V  G+ +F++M  
Sbjct: 825 NSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVH 884

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            YKI+PR +H ACM+DLLGR G L EA E I  ++ EP+  +W  LLGAC+ HG+     
Sbjct: 885 SYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGR 944

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
            AA+ L ELEPE+++  +LL+++YA +G
Sbjct: 945 RAAEKLIELEPENSSPYVLLSNIYAASG 972



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 242/436 (55%), Gaps = 9/436 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A ++ K +HAQ +  G     ++ + ++  Y +C N+  A   F+++ K +I  W ++ 
Sbjct: 95  QASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVL 154

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y+R+G  ++ +  F  +   G+  N F    VL +C  L DI  G+++H  V+K  F 
Sbjct: 155 SMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFE 214

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            ++F   SLIDMYSKCGS+  A+K+FD +V+ D V+  AM++GYVQ GL  EAL + E++
Sbjct: 215 FNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDM 274

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
               + P+ V + T+I+     G       LF  M       +VV+W  +ISG V   C+
Sbjct: 275 QKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMP----NTNVVAWNVMISGHVKRGCD 330

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            EA D FK M   G   T +T+ S+L A AS   +  G  +H  AI  G+  +++V S+L
Sbjct: 331 IEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSL 390

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DH 450
           ++MYAKC  +  A+ +FD + ERN V WN+M+ G A +GY  + ++LF++M       D 
Sbjct: 391 INMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDE 450

Query: 451 LSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++T++L+AC  +  +E+G++L + +++  ++     E+   +VD+  + G L EA +  
Sbjct: 451 FTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVEN--TLVDMYAKCGALEEARQQF 508

Query: 510 KTMSTEPDLFVWGALL 525
           + +    D   W A++
Sbjct: 509 EFIRNR-DNVSWNAII 523



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 249/493 (50%), Gaps = 45/493 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G ++HAQ I  GL     + + LI  Y +C+ +  A+ +FD + + N+  W A+ G
Sbjct: 364 ALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLG 423

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ GY  + + +F EM   G   + F   S+L AC  L  +  G ++HS ++KH+F  
Sbjct: 424 GYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEY 483

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + FV ++L+DMY+KCG++E+A++ F+ +  +D V+ NA++ GYVQ     EA N+   + 
Sbjct: 484 NLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMI 543

Query: 273 TPRVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLM 306
              + P+ V+  +++SG +     + G+QV                     M  K   + 
Sbjct: 544 LDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIE 603

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            A+ V        VVS  ++I+G   N    EA D F+EM ++G  P+  T +S+L AC 
Sbjct: 604 AARYVFSCMPSRSVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFASLLDACT 662

Query: 362 SAANMRRGKEIHGCAIVMGV--EGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
               +  G++IH      G+  +GD    S LV MY      ++A  LF +    ++T+ 
Sbjct: 663 GPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLV-MYMNSQRKTDADILFSEFQYPKSTIL 721

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W ++I G   +G  +EA++L+ +M     + D  +F +VL AC  +  +  G+ + +++ 
Sbjct: 722 WTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLI- 780

Query: 478 EKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             + +   ++    + +VD+  + G +  + ++ + M ++ D+  W +++     +G   
Sbjct: 781 --FHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNG--- 835

Query: 536 LAEIAAKHLSELE 548
            AE A K   E++
Sbjct: 836 YAENALKIFDEMK 848



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 156/373 (41%), Gaps = 79/373 (21%)

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
           T + IH+  LK  FG+   + S+++D+Y+KCG+VE A K F+++ ++DI+A N+++S Y 
Sbjct: 99  TSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYS 158

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTW--------------------------------- 283
           ++G   + +     +    V PN  T+                                 
Sbjct: 159 RQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSF 218

Query: 284 --NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
              +LI  +SK G  V   K+F  +    V+PD VSWT++I+G V     +EA   F++M
Sbjct: 219 CEGSLIDMYSKCGSLVDARKIFDAV----VDPDTVSWTAMIAGYVQVGLPEEALKVFEDM 274

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
              G  P      +++ AC                                      G +
Sbjct: 275 QKLGLVPDQVAFVTVITACVGL-----------------------------------GRL 299

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCD-EAIELFNQMEERK-KLDHLSFTAVLTA 459
            +A  LF +M   N V WN MI G    G CD EAI+ F  M +   K    +  +VL+A
Sbjct: 300 DDACDLFVQMPNTNVVAWNVMISGHVKRG-CDIEAIDFFKNMWKTGVKSTRSTLGSVLSA 358

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
              +  +  G  L +    K  +       + ++++  +  ++  A ++   +  E +L 
Sbjct: 359 IASLEALNYG-LLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALD-ERNLV 416

Query: 520 VWGALLGACKNHG 532
           +W A+LG    +G
Sbjct: 417 LWNAMLGGYAQNG 429



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 109/230 (47%), Gaps = 20/230 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALT 151
           +L  G+++H+ +   GL       + ++  Y +C ++  +  +F+E+  K ++  W ++ 
Sbjct: 769 SLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMI 828

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +A+ GY + A+ +F EM    ++ +      VL AC H   +  G +I  +++ HS+ 
Sbjct: 829 VGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMV-HSYK 887

Query: 212 TDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ--------RGLA 261
               +   + +ID+  + G +++A++  D++  +    + A + G  +        R  A
Sbjct: 888 IVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAA 947

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
            + + L  E  +P V         L + ++ SG+   V+ + + MR KG+
Sbjct: 948 EKLIELEPENSSPYV--------LLSNIYAASGNWDEVNSVRRAMREKGL 989


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/508 (35%), Positives = 283/508 (55%), Gaps = 37/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G++LH   +VS       +   L+  Y  C  +  AR +FD + + ++  W  +   
Sbjct: 138 VEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMING 197

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G+   A+ VF++M   G++ +   + SVL ACG+L ++  G ++H LV +   G  
Sbjct: 198 YFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKK 257

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L+DMY+KCGS+++A+ VFD MVE+D+V+  +M++GY+  G A  AL+L + +  
Sbjct: 258 -IVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQI 316

Query: 274 PRVKPNVVT----------WNTLISGFSKSGDQVMVSKLFQL---------MRAK----G 310
             ++PN VT           N L  G    G  VM  +L+           M AK    G
Sbjct: 317 EGLRPNSVTIALILLACASLNNLKDGRCLHG-WVMKQRLYSEVAVETSLIDMYAKCNCLG 375

Query: 311 VEPDV---------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +   V         V W +++SG VHN    EA   FK+ML +G    +AT +S+LPA  
Sbjct: 376 LSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYG 435

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM--SERNTVTW 419
             A+++    I+   +  G   ++ V ++L+D+Y+KCG +  A  +F+ +    ++   W
Sbjct: 436 ILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVW 495

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           + +I G   HG+ + A+ LF QM +   K + ++FT+VL +C H G+V+ G  LF  M +
Sbjct: 496 SIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLK 555

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            ++ +P  +HY CMVDLLGRAGR+ EAY++IKTM   P   VWGALLGAC  H N+EL E
Sbjct: 556 DHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELGE 615

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           +AA+ L ELEP +  N +LL  LYA  G
Sbjct: 616 VAARWLFELEPGNTGNYVLLAKLYAALG 643



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/502 (31%), Positives = 248/502 (49%), Gaps = 59/502 (11%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   ++ Y   ++L S K LHA LI SGL  +  I + L+  Y  C  +H+AR LFDE+ 
Sbjct: 24  YQSLLKHYGAAQSLTSTKQLHAHLITSGLLSI-DIRSVLVATYAHCGYVHNARKLFDELR 82

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ---NIFVIPSVLKACGHLSDIGT 197
           +     +  +   Y  +G + EA+ VF EM   G K    + +  P V+KAC  L  +  
Sbjct: 83  QRGTLLYNFMIKMYIAKGDYFEAMKVFLEM--LGSKDCCPDNYTYPFVIKACSELLLVEY 140

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G  +H L L   FG+  FV++SL+ MY  CG VE+A+KVFD M EK +V+ N M++GY +
Sbjct: 141 GRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFK 200

Query: 258 RGLATEAL--------------------------------------NLVEEIGTPRVKPN 279
            G A  AL                                       LVEE    +V   
Sbjct: 201 NGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEE----KVLGK 256

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
            +  N L+  ++K G       +F  M    VE DVVSWTS+I+G + N     A   FK
Sbjct: 257 KIVSNALVDMYAKCGSMDEARLVFDNM----VERDVVSWTSMINGYILNGDAKSALSLFK 312

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            M  +G  P S TI+ IL ACAS  N++ G+ +HG  +   +  ++ V ++L+DMYAKC 
Sbjct: 313 IMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCN 372

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLT 458
            +  + ++F + S + TV WN+++ GC ++    EAI LF +M  E  +++  +  ++L 
Sbjct: 373 CLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLP 432

Query: 459 ACCHVGLVELGQRLFNMMQE--KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE- 515
           A    G++   Q + N+     +   +   +    ++D+  + G L  A+++  T+  + 
Sbjct: 433 A---YGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDV 489

Query: 516 PDLFVWGALLGACKNHGNIELA 537
            D+FVW  ++     HG+ E A
Sbjct: 490 QDIFVWSIIIAGYGMHGHGETA 511



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 191/415 (46%), Gaps = 49/415 (11%)

Query: 184 SVLKACGHLSDIGTGEKIHS-LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
           S+LK  G    + + +++H+ L+       D  + S L+  Y+ CG V  A+K+FDE+ +
Sbjct: 26  SLLKHYGAAQSLTSTKQLHAHLITSGLLSID--IRSVLVATYAHCGYVHNARKLFDELRQ 83

Query: 243 KDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPRVKPNVVTW------------------ 283
           +  +  N M+  Y+ +G   EA+ + +E +G+    P+  T+                  
Sbjct: 84  RGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRV 143

Query: 284 -----------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                            N+L++ +   G+     K+F  M+    E  VVSW ++I+G  
Sbjct: 144 LHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMK----EKSVVSWNTMINGYF 199

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
            N   + A   F +M+  G     A++ S+LPAC     +  G+ +HG  +   V G   
Sbjct: 200 KNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGL-VEEKVLGKKI 258

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ER 445
           V +ALVDMYAKCG + EAR +FD M ER+ V+W SMI G   +G    A+ LF  M+ E 
Sbjct: 259 VSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEG 318

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + + ++   +L AC  +  ++ G+ L   +  K ++         ++D+  +   L  +
Sbjct: 319 LRPNSVTIALILLACASLNNLKDGRCLHGWVM-KQRLYSEVAVETSLIDMYAKCNCLGLS 377

Query: 506 YEMIKTMSTEPDLFVWGALLGAC-KNHGNIELAEIAAKHLSE-LEPESAANNMLL 558
           + +  T ++      W ALL  C  N    E   +  K L E +E  +A  N LL
Sbjct: 378 FSVF-TRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLL 431



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P +    S+L    +A ++   K++H   I  G+   + +RS LV  YA CG++  AR
Sbjct: 17  LAPKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLL-SIDIRSVLVATYAHCGYVHNAR 75

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHV 463
            LFD++ +R T+ +N MI      G   EA+++F +M   K    D+ ++  V+ AC  +
Sbjct: 76  KLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSEL 135

Query: 464 GLVELGQRL 472
            LVE G+ L
Sbjct: 136 LLVEYGRVL 144


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/509 (34%), Positives = 279/509 (54%), Gaps = 40/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L SG  LH+  +  GL +   +A  L++ Y +C+ +  A  LF+ +P+ ++  W  +   
Sbjct: 258 LLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISG 317

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             + G   EA+ +F +M   G + +   + S+L A   L+ +  G+++H  ++++    D
Sbjct: 318 CVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMD 377

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           AF+VS+L+D+Y KC  V  A+ ++D     D+V  + ++SGYV  G++ +AL +   +  
Sbjct: 378 AFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLE 437

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
             +KPN VT                                    + L+  ++K G   +
Sbjct: 438 QCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDL 497

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              +F  M  K    D V+W S+IS    N    EA D F++M  +G    + TISS L 
Sbjct: 498 SHYIFSKMSLK----DEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALS 553

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACAS   +  GKEIHG  I   ++ D+   SAL+DMYAKCG +  A  +F+ M ++N V+
Sbjct: 554 ACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVS 613

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I     HG   E++   ++M EE  K DH++F A+++AC H GLVE G +LF  M 
Sbjct: 614 WNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMT 673

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++Y I PR EH+ACMVDL  R+GRL +A + I  M  +PD  +WGALL AC+ H N+ELA
Sbjct: 674 KEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELA 733

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           +IA++ L +L+P ++   +L++++ A AG
Sbjct: 734 DIASQELFKLDPGNSGYYVLMSNINAVAG 762



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 242/475 (50%), Gaps = 34/475 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+++H     +GLA    + + LI  Y++   +  AR  FD +P  +   W  +  
Sbjct: 156 AVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMD 215

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G    AV +F  M + G + N   +   L  C   +D+ +G ++HSL +K     
Sbjct: 216 GYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQ 275

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++L+ MY+KC  ++ A ++F+ +   D+V  N M+SG VQ GL  EAL L  ++ 
Sbjct: 276 EVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDML 335

Query: 273 TPRVKPNVVTWNTLISGFS-----KSGDQV--------------MVSKLFQL-MRAKGVE 312
               +P+ VT  +L+   +     K G +V              +VS L  +  + + V 
Sbjct: 336 RSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVR 395

Query: 313 P-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                       DVV  ++VISG V N  +++A   F+ +L Q   P + T++S+LPACA
Sbjct: 396 TARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACA 455

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S + +  G+EIHG  +    EG  +V SAL+DMYAKCG +  +  +F KMS ++ VTWNS
Sbjct: 456 SISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNS 515

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI   + +G   EA++LF QM  E  K ++++ ++ L+AC  +  +  G+ +  ++  K 
Sbjct: 516 MISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVII-KG 574

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
            I       + ++D+  + G +  A  + + M  + ++  W +++ A   HG ++
Sbjct: 575 PIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEV-SWNSIISAYGAHGLVK 628



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 223/489 (45%), Gaps = 52/489 (10%)

Query: 94  LQSGKILHAQLIVSG-LARLTQIA--TKLITFYTECQNIHHARMLFDEIPKTNIHR---W 147
           L  G  +HA+ +VSG L+    +A  T+L+  Y   +    A  +F  +P+        W
Sbjct: 48  LPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPW 107

Query: 148 IALTGAYARRGYHQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
             L   +   G+H  AV  + +M  H      +   +P V+K+C  L  +  G  +H   
Sbjct: 108 NWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTA 167

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
                 +D +V S+LI MYS  G +  A+  FD M  +D V  N M+ GY++ G    A+
Sbjct: 168 RATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAV 227

Query: 266 NLVEEIGTPRVKPNVVTW-----------------------------------NTLISGF 290
            L   +     +PN  T                                    NTL+S +
Sbjct: 228 RLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMY 287

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +K        +LF+L+       D+V+W  +ISG V N   DEA   F +ML  G  P S
Sbjct: 288 AKCRCLDDAWRLFELLP----RDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDS 343

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
            T+ S+LPA      +++GKE+HG  I   V  D  + SALVD+Y KC  +  AR L+D 
Sbjct: 344 VTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDA 403

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELG 469
               + V  +++I G   +G  ++A+++F   +E+  K + ++  +VL AC  +  + LG
Sbjct: 404 ARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLG 463

Query: 470 QRLFN-MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           Q +   +++  Y+     E  + ++D+  + GRL  ++ +   MS + D   W +++ + 
Sbjct: 464 QEIHGYVLRNAYEGKCYVE--SALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISSF 520

Query: 529 KNHGNIELA 537
             +G  + A
Sbjct: 521 SQNGEPQEA 529



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 140/269 (52%), Gaps = 4/269 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H  ++ +       + + L+  Y +C  +  +  +F ++   +   W ++  
Sbjct: 459 ALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMIS 518

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           ++++ G  QEA+ +F +M ++G+K N   I S L AC  L  I  G++IH +++K     
Sbjct: 519 SFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKA 578

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  S+LIDMY+KCG++E A +VF+ M +K+ V+ N+++S Y   GL  E+++ +  + 
Sbjct: 579 DIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQ 638

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCN 331
               KP+ VT+  LIS  + +G      +LFQ M +   + P +  +  ++     +   
Sbjct: 639 EEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRL 698

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPAC 360
           D+A     +M    F P +    ++L AC
Sbjct: 699 DKAIQFIADM---PFKPDAGIWGALLHAC 724



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 15/191 (7%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGD-----LHVRSALVDMYAKCGFISEARTLFD 409
           ++L  C SA ++  G +IH  A+V G   +     LH R  L+ MY       +A  +F 
Sbjct: 37  ALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTR--LLGMYVLARRFRDAVAVFS 94

Query: 410 KMSER---NTVTWNSMIFGCANHGYCDEAIELFNQM---EERKKLDHLSFTAVLTACCHV 463
            +      +++ WN +I G    G+   A+  + +M         D  +   V+ +C  +
Sbjct: 95  ALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL 154

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
           G V LG RL +       +       + ++ +   AG L +A +    M    D  +W  
Sbjct: 155 GAVSLG-RLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWR-DCVLWNV 212

Query: 524 LLGACKNHGNI 534
           ++      G++
Sbjct: 213 MMDGYIKAGDV 223


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/457 (36%), Positives = 266/457 (58%), Gaps = 21/457 (4%)

Query: 112 LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH 171
           + Q  + L TF      + +A + + ++   N+  + A+   + +     +A+    E++
Sbjct: 17  MNQFISALSTF----NRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQAL----ELY 68

Query: 172 IQGLKQNI----FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227
           +Q L+ N+    +  PS++KACG +S +   E +H  V ++ F +  FV +SL+D YS  
Sbjct: 69  VQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSM 128

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
           G +E++ +VFDEM E+D+ A   MVSG V+ G  + A  L + +       N+ TWNTLI
Sbjct: 129 GRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMP----DRNLATWNTLI 184

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
            G+++  +  +   LF  M A+    D++SWT++I+    N    EA   F EM   G  
Sbjct: 185 DGYARLREVDVAELLFNQMPAR----DIISWTTMINCYSQNKRFREALGVFNEMAKHGIS 240

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T+++++ ACA    +  GKEIH   +  G   D+++ SAL+DMYAKCG +  +  +
Sbjct: 241 PDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLM 300

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLV 466
           F K+ E+N   WNS+I G A HGY +EA+ +F++ME E+ K + ++F +VL+AC H GL+
Sbjct: 301 FFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLI 360

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           E G++ F  M   + I P  EHY CMVDLL +AG L EA ++I+TM  EP+  +WGALL 
Sbjct: 361 EEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLS 420

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
            CK H N+E+A++AA  L  LEP ++    LL ++ A
Sbjct: 421 GCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNA 457



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 170/347 (48%), Gaps = 24/347 (6%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           LI  Y   + +  A +LF+++P  +I  W  +   Y++    +EA+ VF+EM   G+  +
Sbjct: 183 LIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPD 242

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              + +V+ AC HL  +  G++IH  +++H F  D ++ S+LIDMY+KCGS++++  +F 
Sbjct: 243 EVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFF 302

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
           ++ EK++   N+++ G    G A EAL + +++   ++KPN VT+ +++S  + +G    
Sbjct: 303 KLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEE 362

Query: 299 VSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             K F  M R   + P V  +  ++  L      +EA    + M  +   P +    ++L
Sbjct: 363 GRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLE---PNAVIWGALL 419

Query: 358 PACASAANMRRGKEIHGCAI--VMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
             C     + R  EI   A   +M +E G+    + LV+M A+     EA  +   M E+
Sbjct: 420 SGC----KLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQ 475

Query: 415 NT------VTWNSM-----IFGCAN--HGYCDEAIELFNQMEERKKL 448
                    +W  M      F  ++  H   DE   L  +++ + KL
Sbjct: 476 GVEKRCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAELDGQMKL 522



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 148/374 (39%), Gaps = 82/374 (21%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+  + +H  +  +G      + T L+ FY+    I  +  +FDE+P+ ++  W  +   
Sbjct: 96  LRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSG 155

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             R G                                   D+ +  ++  ++   +  T 
Sbjct: 156 LVRVG-----------------------------------DMSSAGRLFDMMPDRNLAT- 179

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               ++LID Y++   V+ A+ +F++M  +DI++   M++ Y Q     EAL +  E+  
Sbjct: 180 ---WNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAK 236

Query: 274 PRVKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQ---------- 304
             + P+ VT  T+IS  +  G                   D  + S L            
Sbjct: 237 HGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDR 296

Query: 305 --LMRAKGVEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
             LM  K  E ++  W SVI GL VH +  +EA   F +M  +   P   T  S+L AC 
Sbjct: 297 SLLMFFKLREKNLFCWNSVIEGLAVHGYA-EEALAMFDKMEREKIKPNGVTFVSVLSACN 355

Query: 362 SAANMRRGKEIHGC-----AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            A  +  G++         +I  GVE        +VD+ +K G + EA  L   M  E N
Sbjct: 356 HAGLIEEGRKRFASMTRDHSIPPGVEH----YGCMVDLLSKAGLLEEALQLIRTMKLEPN 411

Query: 416 TVTWNSMIFGCANH 429
            V W +++ GC  H
Sbjct: 412 AVIWGALLSGCKLH 425



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 159/359 (44%), Gaps = 20/359 (5%)

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           ++++++K +   D ++++  I   S    ++ A   + +M   ++   NAM+ G+VQ   
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
             +AL L  ++    V P   T+ +LI              +   +   G +  V   TS
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           ++         +E+   F EM  +     +  +S ++       +M       G    M 
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLV----RVGDMSSA----GRLFDMM 172

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            + +L   + L+D YA+   +  A  LF++M  R+ ++W +MI   + +    EA+ +FN
Sbjct: 173 PDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFN 232

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRL-FNMMQEKYKIMPRTEHY--ACMVDLL 496
           +M +     D ++   V++AC H+G ++LG+ + + +MQ  + +    + Y  + ++D+ 
Sbjct: 233 EMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNL----DVYIGSALIDMY 288

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
            + G L  +  M   +  E +LF W +++     HG    AE A     ++E E    N
Sbjct: 289 AKCGSLDRSLLMFFKLR-EKNLFCWNSVIEGLAVHG---YAEEALAMFDKMEREKIKPN 343



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 28/277 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +H  ++  G      I + LI  Y +C ++  + ++F ++ + N+  W ++  
Sbjct: 258 ALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIE 317

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
             A  GY +EA+ +F +M  + +K N     SVL AC H   I  G K   S+   HS  
Sbjct: 318 GLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIP 377

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGL--ATEALN- 266
                   ++D+ SK G +E+A ++   M +E + V   A++SG  + R L  A  A N 
Sbjct: 378 PGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANK 437

Query: 267 -LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV--VSWTSVIS 323
            +V E G       +V  N  ++ + ++      +K+   M+ +GVE      SW  + S
Sbjct: 438 LMVLEPGNSGYYTLLVNMNAEVNRWGEA------AKIRLTMKEQGVEKRCPGSSWIEMES 491

Query: 324 GLVHNF--------CNDEAFDTFKEMLSQ----GFCP 348
             VH F         +DE +    E+  Q    G+ P
Sbjct: 492 Q-VHQFAASDKSHAASDEIYSLLAELDGQMKLAGYVP 527


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 166/450 (36%), Positives = 261/450 (58%), Gaps = 20/450 (4%)

Query: 122 FYTECQN---IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           F + C N   I+ A   F  +   N+  + AL        Y ++A+   H MH+  L+ N
Sbjct: 16  FISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALV--HYMHM--LRNN 71

Query: 179 I----FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +    +   S++KAC  L D   GE +H  V KH F +  FV ++LI+ YS  G V  ++
Sbjct: 72  VMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSR 131

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           +VFD+M E+D+ A   M+S +V+ G    A  L +E+     + NV TWN +I G+ K G
Sbjct: 132 RVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMP----EKNVATWNAMIDGYGKLG 187

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           +      LF  M A+    D++SWT++++    N    E    F +++ +G  P   T++
Sbjct: 188 NAESAEFLFNQMPAR----DIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMT 243

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           +++ ACA    +  GKE+H   ++ G + D+++ S+L+DMYAKCG I  A  +F K+  +
Sbjct: 244 TVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTK 303

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           N   WN +I G A HGY +EA+ +F +ME ++ + + ++F ++LTAC H G +E G+R F
Sbjct: 304 NLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWF 363

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M + Y I P+ EHY CMVDLL +AG L +A EMI+ M+ EP+ F+WGALL  CK H N
Sbjct: 364 MSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKN 423

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYA 563
           +E+A IA ++L  LEP ++ +  LL ++YA
Sbjct: 424 LEIAHIAVQNLMVLEPSNSGHYSLLVNMYA 453



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 156/323 (48%), Gaps = 17/323 (5%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           A++  I  ++RD  + S   L  ++    +A        +I  Y +  N   A  LF+++
Sbjct: 144 AWTTMISAHVRDGDMASAGRLFDEMPEKNVATWN----AMIDGYGKLGNAESAEFLFNQM 199

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P  +I  W  +   Y+R   ++E + +FH++  +G+  +   + +V+ AC HL  +  G+
Sbjct: 200 PARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGK 259

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H  ++   F  D ++ SSLIDMY+KCGS++ A  VF ++  K++   N ++ G    G
Sbjct: 260 EVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHG 319

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQVMVSKLFQLMRAKGVEPD 314
              EAL +  E+   R++PN VT+ ++++     GF + G +  +S    +++   + P 
Sbjct: 320 YVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMS----MVQDYCIAPQ 375

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           V  +  ++  L      ++A +  + M  +   P S    ++L  C    N+        
Sbjct: 376 VEHYGCMVDLLSKAGLLEDALEMIRNMTVE---PNSFIWGALLNGCKLHKNLEIAHIAVQ 432

Query: 375 CAIVMGVEGDLHVRSALVDMYAK 397
             +V+      H  S LV+MYA+
Sbjct: 433 NLMVLEPSNSGHY-SLLVNMYAE 454



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 152/347 (43%), Gaps = 34/347 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  +   G      + T LI FY+   ++  +R +FD++P+ ++  W  +  A+ R
Sbjct: 95  GEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVR 154

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G    A  +F EM     ++N+    +++   G L +  + E     +       D   
Sbjct: 155 DGDMASAGRLFDEMP----EKNVATWNAMIDGYGKLGNAESAE----FLFNQMPARDIIS 206

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEK----DIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            +++++ YS+    ++   +F ++++K    D V M  ++S     G    AL L +E+ 
Sbjct: 207 WTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLG----ALALGKEVH 262

Query: 273 TPRV----KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
              V      +V   ++LI  ++K G   M   +F  ++ K    ++  W  +I GL  +
Sbjct: 263 LYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTK----NLFCWNCIIDGLATH 318

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-----IHGCAIVMGVEG 383
              +EA   F EM  +   P + T  SIL AC  A  +  G+      +    I   VE 
Sbjct: 319 GYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEH 378

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANH 429
                  +VD+ +K G + +A  +   M+ E N+  W +++ GC  H
Sbjct: 379 ----YGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLH 421


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/480 (36%), Positives = 258/480 (53%), Gaps = 49/480 (10%)

Query: 132  ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
            A   +  + K+N+H W ++    AR G   EA+  F  +   GL       P  +K+C  
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 192  LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
            L D+ +G   H       F TD FV S+LIDMYSKCG ++ A+ +FDE+  +++V+  +M
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214

Query: 252  VSGYVQRGLATEALNLVEEI-------------------------GTPRVKPNVVT---- 282
            ++GYVQ   A  AL L ++                             RV    +T    
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 1274

Query: 283  --------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                           NTL+  ++K G  ++  K+F  M     E D +SW S+I+    +
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWME----EKDDISWNSMIAVYAQS 1330

Query: 329  FCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
              + EA + F  M+   G    + T+S++L ACA A  +R GK IH   I M +E ++ V
Sbjct: 1331 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 1390

Query: 388  RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
             ++++DMY KCG +  A+  FD+M E+N  +W +M+ G   HG   EA+++F +M     
Sbjct: 1391 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 1450

Query: 447  KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
            K ++++F +VL AC H GLVE G   FN M+ KY I P  EHY CMVDL GRAG L EAY
Sbjct: 1451 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAY 1510

Query: 507  EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +IK M  +PD  VWG+LLGAC+ H N++L EIAA+ L EL+P++    +LL++LYA+AG
Sbjct: 1511 NLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAG 1570



 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 213/416 (51%), Gaps = 40/416 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA++I SGL+    +  KLI  Y+    I +A +LF +I       W  +  A    G 
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            ++A+ ++  M  QG+  + F  P V+KAC +   I  G+ +H  ++K+ F  D FV ++
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID Y KCG    A KVF++M                                  RV+ N
Sbjct: 166 LIDFYFKCGHTRFALKVFEKM----------------------------------RVR-N 190

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
           VV+W T+ISG    GD     ++F  + +K    +VVSWT++I+G + N   +EA + FK
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSK----NVVSWTAMINGYIRNQQPEEALELFK 246

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            M ++   P   T+ S++ AC     +  G+ IH  AI   +E  +++ +AL+DMY+KCG
Sbjct: 247 RMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCG 306

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLT 458
            I +A  +F+ M  ++  TWNSMI     HG   EA+ LF++ME    K D ++F  VL 
Sbjct: 307 SIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLC 366

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AC H+  V+ G   F  M + Y I P  EHY CM +L  R+  L EA++  K + +
Sbjct: 367 ACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGS 422



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 174/386 (45%), Gaps = 50/386 (12%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            L SG++ H Q  V G      +++ LI  Y++C  +  AR LFDEIP  N+  W ++   
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 154  YARRGYHQEAVTVF-----HEMHIQ---GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            Y +      A+ +F      E  ++    +  +  V+ SVL AC  +S  G  E +H  V
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 1277

Query: 206  LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            +K  F     V ++L+D Y+KCG    +KKVFD M EKD ++ N+M++ Y Q GL+ EAL
Sbjct: 1278 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 1337

Query: 266  ----NLVEEIGTP--------------------------------RVKPNVVTWNTLISG 289
                 +V  +G                                   ++ NV    ++I  
Sbjct: 1338 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDM 1397

Query: 290  FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
            + K G   M  K F  M+ K V+    SWT++++G   +    EA D F +M+  G  P 
Sbjct: 1398 YCKCGRVEMAKKTFDRMKEKNVK----SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPN 1453

Query: 350  SATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              T  S+L AC+ A  +  G    +       +E  +     +VD++ + G ++EA  L 
Sbjct: 1454 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI 1513

Query: 409  DKMSER-NTVTWNSMIFGCANHGYCD 433
             +M  + + V W S++  C  H   D
Sbjct: 1514 KRMKMKPDFVVWGSLLGACRIHKNVD 1539



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 138/274 (50%), Gaps = 7/274 (2%)

Query: 100  LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
            +H  ++  G      +   L+  Y +C     ++ +FD + + +   W ++   YA+ G 
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 1332

Query: 160  HQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
              EA+ VFH M  H+ G++ N   + +VL AC H   +  G+ IH  V+K     +  V 
Sbjct: 1333 SGEALEVFHGMVRHV-GVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG 1391

Query: 218  SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
            +S+IDMY KCG VE AKK FD M EK++ +  AMV+GY   G A EAL++  ++    VK
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 1451

Query: 278  PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFD 336
            PN +T+ ++++  S +G        F  M+ K  +EP +  +  ++       C +EA++
Sbjct: 1452 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 1511

Query: 337  TFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
              K M  +   P      S+L AC    N+  G+
Sbjct: 1512 LIKRMKMK---PDFVVWGSLLGACRIHKNVDLGE 1542



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 31/218 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFY-------------------------------TE 125
           GK++H  LI  G +    +   LI FY                                 
Sbjct: 144 GKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS 203

Query: 126 CQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           C ++  AR +FDEIP  N+  W A+   Y R    +EA+ +F  M  + +  N + + S+
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSL 263

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           +KAC  +  +  G  IH   +K+      ++ ++LIDMYSKCGS++ A +VF+ M  K +
Sbjct: 264 IKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSL 323

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
              N+M++     GL  EALNL  E+    VKP+ +T+
Sbjct: 324 PTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITF 361



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 43/237 (18%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            AL++GK +H Q+I   L     + T +I  Y +C  +  A+  FD + + N+  W A+  
Sbjct: 1368 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 1427

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             Y   G  +EA+ +F++M   G+K N     SVL AC H   +  G    +  +KH +  
Sbjct: 1428 GYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFN-AMKHKYD- 1485

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
                                        +E  I     MV  + + G   EA NL++ + 
Sbjct: 1486 ----------------------------IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRM- 1516

Query: 273  TPRVKPNVVTWNTLISG--FSKSGD--QVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
              ++KP+ V W +L+      K+ D  ++   KLF+L      +PD   +  ++S L
Sbjct: 1517 --KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL------DPDNCGYYVLLSNL 1565



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H   I + +     + T LI  Y++C +I  A  +F+ +P+ ++  W ++  +
Sbjct: 273 LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITS 332

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
               G  QEA+ +F EM    +K +      VL AC H+ ++  G    + + +H +G  
Sbjct: 333 LGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH-YGIA 391

Query: 214 AFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
                   + ++Y++  ++++A K   E+
Sbjct: 392 PIPEHYECMTELYARSNNLDEAFKSTKEV 420


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 273/508 (53%), Gaps = 40/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H  +I +G        T ++  Y +C+ I  A  +F+ +P+ ++  W  +   
Sbjct: 158 LRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAG 217

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G+ + AV V  +M   G K +   + SVL A   L  +  G  IH    +  F   
Sbjct: 218 YAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM 277

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA----LNLVE 269
             V ++++D Y KCGSV  A+ VF  M  +++V+ N M+ GY Q G + EA    L +++
Sbjct: 278 VNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLD 337

Query: 270 EIGTP-------------------------------RVKPNVVTWNTLISGFSKSGDQVM 298
           E   P                               ++  +V   N+LIS +SK     +
Sbjct: 338 EGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDI 397

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            + +F  ++ K     VV+W ++I G   N C +EA + F EM S    P S T+ S++ 
Sbjct: 398 AASVFGNLKHK----TVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVIT 453

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  +  R+ K IHG AI   ++ ++ V +AL+D +AKCG I  AR LFD M ER+ +T
Sbjct: 454 ALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT 513

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G   +G+  EA++LFN+M+    K + ++F +V+ AC H GLVE G   F  M+
Sbjct: 514 WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMK 573

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E Y + P  +HY  MVDLLGRAGRL +A++ I+ M  +P + V GA+LGAC+ H N+EL 
Sbjct: 574 ENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELG 633

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANA 565
           E  A  L +L+P+    ++LL ++YA+A
Sbjct: 634 EKTADELFDLDPDDGGYHVLLANMYASA 661



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 257/537 (47%), Gaps = 81/537 (15%)

Query: 104 LIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTGAYARRGYHQE 162
           +I +G        TKLI+ + +  +I  A  +F+ +  K ++     L G YA+    ++
Sbjct: 67  IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKG-YAKNSTLRD 125

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
           AV  +  M    +   ++    +L+  G   D+  G +IH +V+ + F ++ F ++++++
Sbjct: 126 AVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVN 185

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT 282
           +Y+KC  +E A K+F+ M ++D+V+ N +V+GY Q G A  A+ +V ++     KP+ +T
Sbjct: 186 LYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSIT 245

Query: 283 WNTL---------------ISGFS-KSGDQVMVSKLFQLMRA--------------KGVE 312
             ++               I G++ ++G + MV+    ++                KG+ 
Sbjct: 246 LVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS 305

Query: 313 P-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
             +VVSW ++I G   N  ++EAF TF +ML +G  PT+ ++   L ACA+  ++ RG+ 
Sbjct: 306 SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRY 365

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +H       +  D+ V ++L+ MY+KC  +  A ++F  +  +  VTWN+MI G A +G 
Sbjct: 366 VHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGC 425

Query: 432 CDEAIELFNQMEERK-KLDHLSFTAVLTACCHV--------------------------- 463
            +EA+ LF +M+    K D  +  +V+TA   +                           
Sbjct: 426 VNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTA 485

Query: 464 --------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM--- 512
                   G ++  ++LF++MQE++ I      +  M+D  G  G   EA ++   M   
Sbjct: 486 LIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQNG 540

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSE---LEPESAANNMLLTDLYANAG 566
           S +P+   + +++ AC + G +E      + + E   LEP +  +   + DL   AG
Sbjct: 541 SVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEP-TMDHYGAMVDLLGRAG 596



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 166/381 (43%), Gaps = 53/381 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL+ G+ +H     +G   +  +AT ++  Y +C ++  AR++F  +   N+  W  + 
Sbjct: 257 KALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMI 316

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ G  +EA   F +M  +G++     +   L AC +L D+  G  +H L+ +   G
Sbjct: 317 DGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIG 376

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D  V++SLI MYSKC  V+ A  VF  +  K +V  NAM+ GY Q G   EALNL  E+
Sbjct: 377 FDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEM 436

Query: 272 GTPRVKP-----------------------------------NVVTWNTLISGFSKSGDQ 296
            +  +KP                                   NV     LI   +K G  
Sbjct: 437 QSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAI 496

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               KLF LM+    E  V++W ++I G   N    EA D F EM +    P   T  S+
Sbjct: 497 QTARKLFDLMQ----ERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSV 552

Query: 357 LPACASAANMRRG-------KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           + AC+ +  +  G       KE +G    M   G      A+VD+  + G + +A     
Sbjct: 553 IAACSHSGLVEEGMYYFESMKENYGLEPTMDHYG------AMVDLLGRAGRLDDAWKFIQ 606

Query: 410 KMSERNTVT-WNSMIFGCANH 429
            M  +  +T   +M+  C  H
Sbjct: 607 DMPVKPGITVLGAMLGACRIH 627



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 166/344 (48%), Gaps = 45/344 (13%)

Query: 177 QNIFVIPS---------VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227
           Q IF IPS         +L+ C  L ++    +I  L++K+ F  +    + LI ++ K 
Sbjct: 34  QRIF-IPSHVYRHPSAILLELCTSLKEL---HQILPLIIKNGFYNEHLFQTKLISLFCKF 89

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL- 286
            S+ +A +VF+ +  K  V  + M+ GY +     +A+   E +    V P V  +  L 
Sbjct: 90  NSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLL 149

Query: 287 -ISGFS---KSGDQV--MV------SKLFQL------------------MRAKGVEPDVV 316
            +SG +   + G ++  MV      S LF +                  M  +  + D+V
Sbjct: 150 QLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLV 209

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
           SW +V++G   N     A     +M   G  P S T+ S+LPA A    +R G+ IHG A
Sbjct: 210 SWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYA 269

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
              G E  ++V +A++D Y KCG +  AR +F  MS RN V+WN+MI G A +G  +EA 
Sbjct: 270 FRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAF 329

Query: 437 ELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
             F +M +E  +  ++S    L AC ++G +E G+ +  ++ EK
Sbjct: 330 ATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEK 373



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 161/328 (49%), Gaps = 10/328 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H  L    +     +   LI+ Y++C+ +  A  +F  +    +  W A+   
Sbjct: 360 LERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILG 419

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G   EA+ +F EM    +K + F + SV+ A   LS     + IH L ++     +
Sbjct: 420 YAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKN 479

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++LID ++KCG+++ A+K+FD M E+ ++  NAM+ GY   G   EAL+L  E+  
Sbjct: 480 VFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQN 539

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCND 332
             VKPN +T+ ++I+  S SG        F+ M+   G+EP +  + +++  L      D
Sbjct: 540 GSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLD 599

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSAL 391
           +A+   ++M  +   P    + ++L AC    N+  G++       +   +G  HV   L
Sbjct: 600 DAWKFIQDMPVK---PGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHV--LL 654

Query: 392 VDMYAKCGF---ISEARTLFDKMSERNT 416
            +MYA       ++  RT  +K   + T
Sbjct: 655 ANMYASASMWDKVARVRTAMEKKGIQKT 682


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 271/506 (53%), Gaps = 40/506 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G  LH+ L  +G++    +   L+  Y +C ++  A ++F+   +TN+  W  +  A
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + +     ++  +F +M   G++ N F  P +L+ C    +I  GE+IHSL +K  F +D
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V   LIDMYSK G +EKA++V + + EKD+V+  +M++GYVQ     +AL   +E+  
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
             + P                                   +V  WN L++ +++ G    
Sbjct: 440 CGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIRE 499

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
               F+ M  K    D ++   ++SG   +  ++EA   F  M   G      T  S L 
Sbjct: 500 AFSSFEEMELK----DGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALS 555

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ A +++GK+IH   I  G   +  V +AL+ +Y KCG   +A+  F +MSERN V+
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS 615

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I  C+ HG   EA++LF+QM +E  K + ++F  VL AC HVGLVE G   F  M 
Sbjct: 616 WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 675

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++Y I PR +HYAC++D+ GRAG+L  A + I+ M    D  VW  LL ACK H NIE+ 
Sbjct: 676 DEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVG 735

Query: 538 EIAAKHLSELEPESAANNMLLTDLYA 563
           E AAKHL ELEP  +A+ +LL++ YA
Sbjct: 736 EFAAKHLLELEPHDSASYVLLSNAYA 761



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 232/469 (49%), Gaps = 36/469 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+++HAQ    G      +   +IT Y  C +   A  +F ++P  +   +  L   +A+
Sbjct: 162 GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQ 221

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+ + A+ +F EM   GL  +   I S+L AC  L D+  G ++HS + K    +D  +
Sbjct: 222 CGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIM 281

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
             SL+D+Y KCG VE A  +F+     ++V  N M+  + Q     ++  L  ++    +
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI 341

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           +PN  T+  ++   + +     G+Q+                     M SK   L +A+ 
Sbjct: 342 RPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR 401

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     E DVVSWTS+I+G V + C  +A   FKEM   G  P +  ++S +  CA    
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           MR+G +IH    V G  GD+ + +ALV++YA+CG I EA + F++M  ++ +T N ++ G
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSG 521

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIM 483
            A  G  +EA+++F +M++   K +  +F + L+A  ++  ++ G+++   +++  +   
Sbjct: 522 FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF- 580

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             TE    ++ L G+ G   +A      MS E +   W  ++ +C  HG
Sbjct: 581 -ETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHG 627



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 215/456 (47%), Gaps = 55/456 (12%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+ +  GL +   +   LI  Y++   +  AR +F+E+   +   W+A+   YA+ G 
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA+ ++ +MH  G+    +V+ SVL +C        G  IH+   KH F ++ FV ++
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           +I +Y +CGS   A++VF +M  +D V  N ++SG+ Q G    AL + EE+    + P+
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND------- 332
            VT ++L++  +  GD    ++L   +   G+  D +   S++   V   C D       
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVK--CGDVETALVI 301

Query: 333 --------------------------EAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                                     ++F+ F +M + G  P   T   IL  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G++IH  ++  G E D++V   L+DMY+K G++ +AR + + + E++ V+W SMI G 
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 427 ANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
             H  C +A+  F +M++     D++   + ++ C  +          N M++  +I  R
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI----------NAMRQGLQIHAR 471

Query: 486 ---------TEHYACMVDLLGRAGRLAEAYEMIKTM 512
                       +  +V+L  R GR+ EA+   + M
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEM 507



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 179/385 (46%), Gaps = 47/385 (12%)

Query: 186 LKAC-GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           L+AC G+        +IH+  +    G    V + LID+YSK G V  A++VF+E+  +D
Sbjct: 48  LRACRGNGRRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARD 107

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEE------IGTPRVKPNVVT---------------- 282
            V+  AM+SGY Q GL  EAL L  +      + TP V  +V++                
Sbjct: 108 NVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHA 167

Query: 283 -------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                         N +I+ + + G   +  ++F  M  +    D V++ ++ISG     
Sbjct: 168 QGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHR----DTVTFNTLISGHAQCG 223

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             + A + F+EM   G  P   TISS+L ACAS  ++++G ++H      G+  D  +  
Sbjct: 224 HGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG 283

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           +L+D+Y KCG +  A  +F+     N V WN M+          ++ ELF QM+    + 
Sbjct: 284 SLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP 343

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAY 506
           +  ++  +L  C     ++LG+++ ++     K    ++ Y    ++D+  + G L +A 
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSL---SVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 507 EMIKTMSTEPDLFVWGALLGACKNH 531
            +++ M  E D+  W +++     H
Sbjct: 401 RVLE-MLKEKDVVSWTSMIAGYVQH 424


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/501 (35%), Positives = 266/501 (53%), Gaps = 32/501 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H   I  G      + T L+T Y +CQ I  A  +F+E+P   I  W AL  AY  
Sbjct: 260 GKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVG 319

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            GY  +A+ ++ +M +  +  + F I +VL +         G  IH+ ++K    +   +
Sbjct: 320 NGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITI 379

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+L+ MYSK G    A  +F  M E+D+VA  +++SG+ Q     EAL+    +    V
Sbjct: 380 QSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLV 439

Query: 277 KPNVVTWNTLIS---------------GFS-KSGDQV----------MVSKLFQLMRAKG 310
           KP+     ++IS               GF  KSG Q+          M SK     RA  
Sbjct: 440 KPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGN 499

Query: 311 VEPD-----VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           +  D     +V+W S+IS    N   D + + F ++L     P S + +S+L A +S A 
Sbjct: 500 IFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAA 559

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + +GK +HG  + + +  DL V + L+DMY KCG +  A+ +F+++SE+N V WNSMI G
Sbjct: 560 LLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGG 619

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
             +HG C +AIELF++M     K D ++F ++L++C H GL+E G  LF MM+ K+ I P
Sbjct: 620 YGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEP 679

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           R EHY  +VDL GRAG L +AY  +K M  EPD  +W +LL +CK H N+EL E+ A  L
Sbjct: 680 RMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKL 739

Query: 545 SELEPESAANNMLLTDLYANA 565
             +EP   +N + L +LY  A
Sbjct: 740 LNMEPSKGSNYVQLLNLYGEA 760



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 233/486 (47%), Gaps = 53/486 (10%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRW 147
           ++    + GK +H+ ++ + L     + T LI  Y +C     AR LF ++  ++NI  W
Sbjct: 150 MQSSGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAW 209

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS----VLKACGHLSDIGTGEKIHS 203
             + G +   G  + ++    E ++    +N+ V+ S     L ACG    +  G+++H 
Sbjct: 210 NVMIGGFGENGLWENSL----EYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHC 265

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
             +K  F  D +V +SL+ MY KC  +E A+KVF+E+ +K+I   NA++S YV  G A +
Sbjct: 266 DAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYD 325

Query: 264 ALNLVE-----------------------------------EIGTPRVKPNVVTWNTLIS 288
           AL + +                                   EI    ++ ++   + L++
Sbjct: 326 ALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLT 385

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
            +SK GD    + +F  M+    E DVV+W SVISG   N    EA D F+ M +    P
Sbjct: 386 MYSKFGDSNYANSIFSTMK----ERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKP 441

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
            S  ++SI+ AC     +  G  IHG  I  G++ D+ V S+L+DMY+K GF   A  +F
Sbjct: 442 DSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIF 501

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLV 466
             M  +N V WNS+I     +   D +I LF+Q+  R  L  D +SFT+VL A   V  +
Sbjct: 502 SDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQV-LRNDLYPDSVSFTSVLAAISSVAAL 560

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
             G+ +   +   + I    +    ++D+  + G L  A  + + +S E +L  W +++G
Sbjct: 561 LKGKSVHGYLVRLW-IPFDLQVENTLIDMYIKCGLLKYAQHIFERIS-EKNLVAWNSMIG 618

Query: 527 ACKNHG 532
              +HG
Sbjct: 619 GYGSHG 624



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 181/374 (48%), Gaps = 27/374 (7%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F  PS+LKAC  LS++  G+ IHS ++     +D ++ SSLI++Y KCG+   A KVFD+
Sbjct: 54  FTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQ 113

Query: 240 MVEK-----DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP----------NVVTWN 284
           + +      D+   N+++ GY + G   E +     + +   K           N++ ++
Sbjct: 114 LPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKEGKQIHSYIVRNMLNFD 173

Query: 285 -----TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                 LI  + K G       LF+ ++ +    ++V+W  +I G   N   + + + + 
Sbjct: 174 PFLETALIDTYFKCGRPTEARYLFKKLKDRS---NIVAWNVMIGGFGENGLWENSLEYYL 230

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
              ++     S++ +  L AC     +  GK++H  AI +G E D +V ++L+ MY KC 
Sbjct: 231 LAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQ 290

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLT 458
            I  A  +F+++ ++    WN++I     +GY  +A+ ++ QM+    L D  +   VLT
Sbjct: 291 MIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLT 350

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           +    GL +LG RL +    K  +       + ++ +  + G    A  +  TM  E D+
Sbjct: 351 SSSMAGLYDLG-RLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMK-ERDV 408

Query: 519 FVWGALL-GACKNH 531
             WG+++ G C+N 
Sbjct: 409 VAWGSVISGFCQNR 422



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 189/415 (45%), Gaps = 60/415 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-----NIHRWI 148
           LQ GK +H+ +I +GL     I + LI  Y +C     A  +FD++PK+     ++  W 
Sbjct: 69  LQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWN 128

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           ++   Y R G  +E +  F  M   G K+                    G++IHS ++++
Sbjct: 129 SIIDGYFRFGQLEEGMVQFGRMQSSGYKE--------------------GKQIHSYIVRN 168

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNL 267
               D F+ ++LID Y KCG   +A+ +F ++ ++ +IVA N M+ G+ + GL   +L  
Sbjct: 169 MLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEY 228

Query: 268 VEEIGTPRVKPNVVTWNTLISG-----FSKSGDQV---------------------MVSK 301
                T  VK    ++   +S      F   G QV                     M  K
Sbjct: 229 YLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGK 288

Query: 302 LFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              +  A+ V     + ++  W ++IS  V N    +A   +K+M        S TI ++
Sbjct: 289 CQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNV 348

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L + + A     G+ IH   +   ++  + ++SAL+ MY+K G  + A ++F  M ER+ 
Sbjct: 349 LTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDV 408

Query: 417 VTWNSMIFG-CANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELG 469
           V W S+I G C N  Y  EA++ F  ME +  K D     ++++AC  +  V+LG
Sbjct: 409 VAWGSVISGFCQNRKY-KEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLG 462



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 25/189 (13%)

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           T  T  S+L ACAS +N++ GK IH   I  G+  D ++ S+L+++Y KCG  ++A  +F
Sbjct: 52  TRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVF 111

Query: 409 DKM-----SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463
           D++     S  +   WNS+I G    G  +E +  F +M+                    
Sbjct: 112 DQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSS------------------ 153

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
           G  E  Q    +++      P  E    ++D   + GR  EA  + K +    ++  W  
Sbjct: 154 GYKEGKQIHSYIVRNMLNFDPFLE--TALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNV 211

Query: 524 LLGACKNHG 532
           ++G    +G
Sbjct: 212 MIGGFGENG 220



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +H  L+   +    Q+   LI  Y +C  + +A+ +F+ I + N+  W ++ G
Sbjct: 559 ALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIG 618

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G   +A+ +F EM   G+K +     S+L +C H   I  G  +  + +K  FG 
Sbjct: 619 GYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEM-MKMKFGI 677

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKD 244
           +  +    +++D+Y + G +  A      M VE D
Sbjct: 678 EPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPD 712


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 279/508 (54%), Gaps = 40/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H  L+ SG +      T L   Y +C+ ++ AR +FD +P+ ++  W  +   
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAG 210

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y++ G  + A+ +   M  + LK +   I SVL A   L  I  G++IH   ++  F + 
Sbjct: 211 YSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL 270

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + ++L+DMY+KCGS+E A+++FD M+E+++V+ N+M+  YVQ     EA+ + +++  
Sbjct: 271 VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
             VKP                                   NV   N+LIS + K  +   
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            + +F  ++++     +VSW ++I G   N    +A + F +M S+   P + T  S++ 
Sbjct: 391 AASMFGKLQSR----TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  +     K IHG  +   ++ ++ V +ALVDMYAKCG I  AR +FD MSER+  T
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G   HG+   A+ELF +M++   K + ++F +V++AC H GLVE G + F MM+
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E Y I    +HY  MVDLLGRAGRL EA++ I  M  +P + V+GA+LGAC+ H N+  A
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANA 565
           E AA+ L EL P+    ++LL ++Y  A
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAA 654



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 227/463 (49%), Gaps = 44/463 (9%)

Query: 107 SGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYARRGYHQEAVT 165
           +GL +     TKL++ +    ++  A  +F+ I  K N+     L G +A+     +A+ 
Sbjct: 63  NGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKG-FAKVSDLDKALQ 121

Query: 166 VFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYS 225
            F  M    ++  ++    +LK CG  +++  G++IH L++K  F  D F ++ L +MY+
Sbjct: 122 FFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYA 181

Query: 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW-- 283
           KC  V +A+KVFD M E+D+V+ N +V+GY Q G+A  AL +V+ +    +KP+ +T   
Sbjct: 182 KCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVS 241

Query: 284 ---------------------------------NTLISGFSKSGDQVMVSKLFQLMRAKG 310
                                              L+  ++K G      +LF  M    
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM---- 297

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           +E +VVSW S+I   V N    EA   F++ML +G  PT  ++   L ACA   ++ RG+
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            IH  ++ +G++ ++ V ++L+ MY KC  +  A ++F K+  R  V+WN+MI G A +G
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417

Query: 431 YCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
              +A+  F+QM  R  K D  ++ +V+TA   + +    + +  ++  +  +       
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM-RSCLDKNVFVT 476

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             +VD+  + G +  A  +I  M +E  +  W A++     HG
Sbjct: 477 TALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHG 518



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 172/379 (45%), Gaps = 49/379 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +  GK +H   + SG   L  I+T L+  Y +C ++  AR LFD + + N+  W ++ 
Sbjct: 250 RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMI 309

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AY +    +EA+ +F +M  +G+K     +   L AC  L D+  G  IH L ++    
Sbjct: 310 DAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLD 369

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  VV+SLI MY KC  V+ A  +F ++  + +V+ NAM+ G+ Q G   +ALN   ++
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429

Query: 272 GTPRVKPNVVTWNTLISG-----------------------------------FSKSGDQ 296
            +  VKP+  T+ ++I+                                    ++K G  
Sbjct: 430 RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
           ++   +F +M     E  V +W ++I G   H F    A + F+EM      P   T  S
Sbjct: 490 MIARLIFDMMS----ERHVTTWNAMIDGYGTHGF-GKAALELFEEMQKGTIKPNGVTFLS 544

Query: 356 ILPACASAANMRRGKEIHGCAIVM----GVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           ++ AC+ +  +  G +   C  +M     +E  +    A+VD+  + G ++EA     +M
Sbjct: 545 VISACSHSGLVEAGLK---CFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQM 601

Query: 412 SERNTVT-WNSMIFGCANH 429
             +  V  + +M+  C  H
Sbjct: 602 PVKPAVNVYGAMLGACQIH 620



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 163/327 (49%), Gaps = 37/327 (11%)

Query: 178 NIFVIPS--VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
           N++  P+  +L+ C  L ++    +I  LV K+    + F  + L+ ++ + GSV++A +
Sbjct: 34  NVYEHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAAR 90

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI-------- 287
           VF+ +  K  V  + M+ G+ +     +AL     +    V+P V  +  L+        
Sbjct: 91  VFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAE 150

Query: 288 -------------SGFS-----KSGDQVMVSKLFQLMRAKGV-----EPDVVSWTSVISG 324
                        SGFS      +G + M +K  Q+  A+ V     E D+VSW ++++G
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAG 210

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
              N     A +  K M  +   P+  TI S+LPA ++   +  GKEIHG A+  G +  
Sbjct: 211 YSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL 270

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-E 443
           +++ +ALVDMYAKCG +  AR LFD M ERN V+WNSMI     +    EA+ +F +M +
Sbjct: 271 VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQ 470
           E  K   +S    L AC  +G +E G+
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGR 357


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 170/474 (35%), Positives = 269/474 (56%), Gaps = 14/474 (2%)

Query: 98  KILHAQLIVSGLARLTQIATKLI--TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K +HA +IV G    T    +LI  +       + +A  LF  I + +   W  +    A
Sbjct: 30  KQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSA 89

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +      A++++ +M    ++ + F  P VLKAC  L  +  G  +H  V +  F ++ F
Sbjct: 90  QSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTF 149

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LI  ++ CG +  A+ +FD   ++D+VA +A+ +GY +RG    A  L +E+    
Sbjct: 150 VRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVK- 208

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
              ++V+WN +I+G++K G+     KLF  +  +    DVV+W ++I+G V    N +A 
Sbjct: 209 ---DLVSWNVMITGYAKRGEMESARKLFDEVPKR----DVVTWNAMIAGYVLCGSNQQAL 261

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV--RSALVD 393
           + F+EM S G  P   T+ S+L AC    ++  G+ IH C   MG   DL V   +AL+D
Sbjct: 262 EMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFR-DLSVLLGNALID 320

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
           MYAKCG I  A  +F  M E++  TWNS++ G A HG+ +++I LF +M + K + D ++
Sbjct: 321 MYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEIT 380

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  VL AC H G VE G++ F++M+++Y I P   HY CMVDLLGRAG L EA++ I TM
Sbjct: 381 FVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTM 440

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             EP+  VW  LLGAC+ HGN+EL   A   L ++  + + + +LL+++YA+ G
Sbjct: 441 KIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRG 494


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/480 (36%), Positives = 276/480 (57%), Gaps = 20/480 (4%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYT--------ECQNIHHARMLFDEIPKTNIHRWIA 149
           K +HA +IV+GL        KL+                I +A  +F +IP+ +   W  
Sbjct: 18  KQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWNT 77

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
                ++      AV ++ +M  + +K + F  P VLKAC  L  + TG  +H  VL+  
Sbjct: 78  YIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLG 137

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           FG++  V ++L+  ++KCG ++ A  +FD+  + D+VA +A+++GY QRG  + A  L +
Sbjct: 138 FGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFD 197

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
           E+  P  K ++V+WN +I+ ++K G+     +LF     K    D+VSW ++I G V   
Sbjct: 198 EM--P--KRDLVSWNVMITVYTKHGEMESARRLFDEAPMK----DIVSWNALIGGYVLRN 249

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH--V 387
            N EA + F EM   G CP   T+ S+L ACA   ++  G+++H   I M  +G L   +
Sbjct: 250 LNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMN-KGKLSTLL 308

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            +ALVDMYAKCG I +A  +F  + +++ V+WNS+I G A HG+ +E++ LF +M+  K 
Sbjct: 309 GNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKV 368

Query: 448 L-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
             D ++F  VL AC H G V+ G R F++M+ KYKI P   H  C+VD+LGRAG L EA+
Sbjct: 369 CPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAF 428

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             I +M  EP+  VW +LLGACK HG++ELA+ A + L  +  + + + +LL+++YA+ G
Sbjct: 429 NFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQG 488



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 154/375 (41%), Gaps = 81/375 (21%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           + +G  +H +++  G      +   L+ F+ +C ++  A  +FD+  K ++  W AL   
Sbjct: 123 VNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAG 182

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+RG    A  +F EM  +                                       D
Sbjct: 183 YAQRGDLSVARKLFDEMPKR---------------------------------------D 203

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               + +I +Y+K G +E A+++FDE   KDIV+ NA++ GYV R L  EAL L +E+  
Sbjct: 204 LVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCG 263

Query: 274 PRVKPNVVTW------------------------------------NTLISGFSKSGDQV 297
               P+ VT                                     N L+  ++K G+  
Sbjct: 264 VGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIG 323

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F L+R K    DVVSW SVISGL  +   +E+   F+EM     CP   T   +L
Sbjct: 324 KAVRVFWLIRDK----DVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVL 379

Query: 358 PACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            AC+ A N+  G +  H       +E  +     +VDM  + G + EA      M  E N
Sbjct: 380 AACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPN 439

Query: 416 TVTWNSMIFGCANHG 430
            + W S++  C  HG
Sbjct: 440 AIVWRSLLGACKVHG 454


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 178/472 (37%), Positives = 258/472 (54%), Gaps = 46/472 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K + A  + +G+    Q+   L+    +  +I +A  LFD IPK  +  +  L  AY+  
Sbjct: 5   KQIQAYTLRNGIEHTKQLIVSLL----QIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G H +  +++ +M +QG   N      +  AC  LS    G  +H+  +K  FG D F +
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFAL 120

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L+DMY+K G +  A+K FDEM  +D                                 
Sbjct: 121 TALVDMYAKLGLLSLARKQFDEMTVRD--------------------------------- 147

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             V TWN++I+G+++ GD     +LF+LM A+    +V SWT++ISG   N    +A   
Sbjct: 148 --VPTWNSMIAGYARCGDLEGALELFRLMPAR----NVTSWTAMISGYAQNGQYAKALSM 201

Query: 338 FKEMLSQG-FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
           F  M  +    P   T++S+LPACA+   +  G+ I   A   G   +L+V +AL++MYA
Sbjct: 202 FLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYA 261

Query: 397 KCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           +CG I +A  +F+++   RN  +WNSMI G A HG CDEAIELF +M  E    D ++F 
Sbjct: 262 RCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFV 321

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL AC H G+V  GQ  F  M+  + I P+ EHY CMVDLLGRAG L EA+++I  M  
Sbjct: 322 GVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPM 381

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           EPD  VWG LLGAC  HG++ELAE AA  L ELEP +  N ++L+++YA AG
Sbjct: 382 EPDSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAG 433


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/480 (36%), Positives = 258/480 (53%), Gaps = 49/480 (10%)

Query: 132  ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
            A   +  + K+N+H W ++    AR G   EA+  F  +   GL       P  +K+C  
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 192  LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
            L D+ +G   H       F TD FV S+LIDMYSKCG ++ A+ +FDE+  +++V+  +M
Sbjct: 2028 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 2087

Query: 252  VSGYVQRGLATEALNLVEEI-------------------------GTPRVKPNVVT---- 282
            ++GYVQ   A  AL L ++                             RV    +T    
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147

Query: 283  --------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                           NTL+  ++K G  ++  K+F  M     E D +SW S+I+    +
Sbjct: 2148 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWME----EKDDISWNSMIAVYAQS 2203

Query: 329  FCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
              + EA + F  M+   G    + T+S++L ACA A  +R GK IH   I M +E ++ V
Sbjct: 2204 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 2263

Query: 388  RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
             ++++DMY KCG +  A+  FD+M E+N  +W +M+ G   HG   EA+++F +M     
Sbjct: 2264 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 2323

Query: 447  KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
            K ++++F +VL AC H GLVE G   FN M+ KY I P  EHY CMVDL GRAG L EAY
Sbjct: 2324 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAY 2383

Query: 507  EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +IK M  +PD  VWG+LLGAC+ H N++L EIAA+ L EL+P++    +LL++LYA+AG
Sbjct: 2384 NLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAG 2443



 Score =  231 bits (588), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 213/416 (51%), Gaps = 40/416 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA++I SGL+    +  KLI  Y+    I +A +LF +I       W  +  A    G 
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            ++A+ ++  M  QG+  + F  P V+KAC +   I  G+ +H  ++K+ F  D FV ++
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID Y KCG    A KVF++M                                  RV+ N
Sbjct: 166 LIDFYFKCGHTRFALKVFEKM----------------------------------RVR-N 190

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
           VV+W T+ISG    GD     ++F  + +K    +VVSWT++I+G + N   +EA + FK
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSK----NVVSWTAMINGYIRNQQPEEALELFK 246

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            M ++   P   T+ S++ AC     +  G+ IH  AI   +E  +++ +AL+DMY+KCG
Sbjct: 247 RMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCG 306

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLT 458
            I +A  +F+ M  ++  TWNSMI     HG   EA+ LF++ME    K D ++F  VL 
Sbjct: 307 SIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLC 366

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AC H+  V+ G   F  M + Y I P  EHY CM +L  R+  L EA++  K + +
Sbjct: 367 ACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGS 422



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 174/386 (45%), Gaps = 50/386 (12%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            L SG++ H Q  V G      +++ LI  Y++C  +  AR LFDEIP  N+  W ++   
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090

Query: 154  YARRGYHQEAVTVF-----HEMHIQ---GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            Y +      A+ +F      E  ++    +  +  V+ SVL AC  +S  G  E +H  V
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 2150

Query: 206  LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            +K  F     V ++L+D Y+KCG    +KKVFD M EKD ++ N+M++ Y Q GL+ EAL
Sbjct: 2151 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 2210

Query: 266  N----LVEEIGTP--------------------------------RVKPNVVTWNTLISG 289
                 +V  +G                                   ++ NV    ++I  
Sbjct: 2211 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDM 2270

Query: 290  FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
            + K G   M  K F  M+ K V+    SWT++++G   +    EA D F +M+  G  P 
Sbjct: 2271 YCKCGRVEMAKKTFDRMKEKNVK----SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPN 2326

Query: 350  SATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              T  S+L AC+ A  +  G    +       +E  +     +VD++ + G ++EA  L 
Sbjct: 2327 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI 2386

Query: 409  DKMSER-NTVTWNSMIFGCANHGYCD 433
             +M  + + V W S++  C  H   D
Sbjct: 2387 KRMKMKPDFVVWGSLLGACRIHKNVD 2412



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 138/274 (50%), Gaps = 7/274 (2%)

Query: 100  LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
            +H  ++  G      +   L+  Y +C     ++ +FD + + +   W ++   YA+ G 
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 2205

Query: 160  HQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
              EA+ VFH M  H+ G++ N   + +VL AC H   +  G+ IH  V+K     +  V 
Sbjct: 2206 SGEALEVFHGMVRHV-GVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG 2264

Query: 218  SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
            +S+IDMY KCG VE AKK FD M EK++ +  AMV+GY   G A EAL++  ++    VK
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324

Query: 278  PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFD 336
            PN +T+ ++++  S +G        F  M+ K  +EP +  +  ++       C +EA++
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 2384

Query: 337  TFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
              K M  +   P      S+L AC    N+  G+
Sbjct: 2385 LIKRMKMK---PDFVVWGSLLGACRIHKNVDLGE 2415



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 31/222 (13%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFY----------------------------- 123
           ++  GK++H  LI  G +    +   LI FY                             
Sbjct: 140 SIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVIS 199

Query: 124 --TECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
               C ++  AR +FDEIP  N+  W A+   Y R    +EA+ +F  M  + +  N + 
Sbjct: 200 GLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYT 259

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + S++KAC  +  +  G  IH   +K+      ++ ++LIDMYSKCGS++ A +VF+ M 
Sbjct: 260 MVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP 319

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
            K +   N+M++     GL  EALNL  E+    VKP+ +T+
Sbjct: 320 RKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITF 361



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 43/237 (18%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            AL++GK +H Q+I   L     + T +I  Y +C  +  A+  FD + + N+  W A+  
Sbjct: 2241 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 2300

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             Y   G  +EA+ +F++M   G+K N     SVL AC H   +  G    +  +KH +  
Sbjct: 2301 GYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFN-AMKHKYD- 2358

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
                                        +E  I     MV  + + G   EA NL++ + 
Sbjct: 2359 ----------------------------IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRM- 2389

Query: 273  TPRVKPNVVTWNTLISG--FSKSGD--QVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
              ++KP+ V W +L+      K+ D  ++   KLF+L      +PD   +  ++S L
Sbjct: 2390 --KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL------DPDNCGYYVLLSNL 2438



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H   I + +     + T LI  Y++C +I  A  +F+ +P+ ++  W ++  +
Sbjct: 273 LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITS 332

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
               G  QEA+ +F EM    +K +      VL AC H+ ++  G
Sbjct: 333 LGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/567 (30%), Positives = 293/567 (51%), Gaps = 62/567 (10%)

Query: 61  IEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLI 120
           +E   ++  + +   L    YS  +++    ++   GK +H+ +  + +     +  KL+
Sbjct: 82  LENAMELICMCKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLV 141

Query: 121 TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH------------ 168
           +FY  C ++   R +FD + K N++ W  +   YA+ G  +E++ +F             
Sbjct: 142 SFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRP 201

Query: 169 ---------------------------------------EMHIQGLKQNIFVIPSVLKAC 189
                                                  +M   G+  ++  I SVL  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
            +   +  G+ +HSL +K SF       ++L+DMYSKCG ++ A +VF++M E+++V+  
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
           +M++GY + G +  A+ L++++    VK +VV   +++   ++SG       +   ++A 
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC----------PTSATISSILPA 359
            +E ++    +++         + A   F  M+ +             P S T++ +LPA
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPA 441

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CAS + + RGKEIHG  +  G   D HV +ALVD+Y KCG +  AR LFD +  ++ V+W
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
             MI G   HGY +EAI  FN+M +   + D +SF ++L AC H GL+E G R F +M+ 
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + I P+ EHYACMVDLL R G L++AYE I+T+   PD  +WGALL  C+N+ +IELAE
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAE 621

Query: 539 IAAKHLSELEPESAANNMLLTDLYANA 565
             A+ + ELEPE++   +LL ++YA A
Sbjct: 622 KVAERVFELEPENSGYYVLLANIYAEA 648


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 284/550 (51%), Gaps = 43/550 (7%)

Query: 49  SDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQS--GKILHAQLIV 106
           SD G P  + IF+  H +     +  +L P  ++    I    R      G +LHA  IV
Sbjct: 88  SDNGLPK-SSIFLYTHLR-----KKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIV 141

Query: 107 SGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTV 166
            G+A    + + ++  Y +      AR +FD +P+ +   W  +   ++R  Y ++++ V
Sbjct: 142 DGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRV 201

Query: 167 FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
           F +M   GL  +   + +VL A   L +   G  I  L  K    +D +V++ LI +YSK
Sbjct: 202 FVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSK 261

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
           CG   K + +FD++ + D+++ NAM+SGY        A+ L  E+     + N  T   L
Sbjct: 262 CGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGL 321

Query: 287 ISGFSKSGDQVMVSKLFQLMRAK-GV-------------------------------EPD 314
           I  +    + + +S+L Q +  K G+                               E  
Sbjct: 322 IPVYLPF-NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKS 380

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           + SW ++ISG   N   D A   F+EM+ Q   P   T++SIL ACA    +  GK +HG
Sbjct: 381 LASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHG 439

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
                 +E +++V +ALVDMYAKCG I EAR LFD M ++N VTWN+MI G   HG+  E
Sbjct: 440 LIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKE 499

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A++LF +M +       ++F ++L AC H GLV  G  +F+ M   Y   P +EHYACMV
Sbjct: 500 ALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMV 559

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           D+LGRAG+L  A E I+ M  EP   VWGALLGAC  H N E+A +A+K L +L+PE+  
Sbjct: 560 DILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVG 619

Query: 554 NNMLLTDLYA 563
             +LL+++Y+
Sbjct: 620 YYVLLSNIYS 629



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 220/470 (46%), Gaps = 42/470 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           + AQLI+ G+       TKL   + +   + H R LF+++ K ++  +  L   ++  G 
Sbjct: 33  IQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGL 92

Query: 160 HQEAVTVF-HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            + ++ ++ H      L+ + F     + A   L D   G  +H+  +     ++ FV S
Sbjct: 93  PKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGS 152

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR----------------GLAT 262
           +++D+Y K    E A+KVFD M E+D V  N M+SG+ +                 GL+ 
Sbjct: 153 AIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSF 212

Query: 263 EALNL------VEEIGTPR-------------VKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           ++  L      V E+   R             +  +V     LIS +SK G       LF
Sbjct: 213 DSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILF 272

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             +     +PD++S+ ++ISG   N   + A   F+E+L+ G    S+T+  ++P     
Sbjct: 273 DQID----QPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            +++  + I   ++ +G+     V +AL  +Y +   +  AR LFD+  E++  +WN+MI
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388

Query: 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
            G   +G  D AI LF +M  +   + ++ T++L+AC  +G + +G+ +  +++ + ++ 
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLE 447

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
                   +VD+  + G + EA ++   M  + ++  W A++     HG+
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGH 496


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/483 (36%), Positives = 269/483 (55%), Gaps = 53/483 (10%)

Query: 133 RMLFDE-IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           R +F + + KT+++ W ++   +AR G   +A+  F  M    L  N    P  +K+C  
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L D+  G++IH       +G+D FV S+LIDMYSKCG +  A+K+FDE+ E+++V+  +M
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 252 VSGYVQRGLATEALNLVEEI----------------------------GTPRVKPNVVT- 282
           +SGYVQ   A EA+ L +E                                RV    VT 
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 283 -----------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                             NTL+  ++K G+  +  K+F  M     E DV SW S+I+  
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME----ETDVCSWNSLIAVY 274

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSA-TISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
             N  + EAF  F +M+ +G    +A T+S++L ACA +  ++ GK IH   + M +E +
Sbjct: 275 AQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDN 334

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           L V +++VDMY KCG +  AR  FD++  +N  +W  M+ G   HG+  EA+++F +M  
Sbjct: 335 LVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIR 394

Query: 445 RK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              K ++++F +VL AC H GL++ G   FN M+ ++ + P  EHY+CMVDLLGRAG L 
Sbjct: 395 CGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLK 454

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EAY +I+ M  +PD  VWG+LLGAC+ H N+EL EI+A+ L +L+P +    +LL+++YA
Sbjct: 455 EAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYA 514

Query: 564 NAG 566
           +AG
Sbjct: 515 DAG 517



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 176/385 (45%), Gaps = 53/385 (13%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +GK +H Q  V G      +A+ LI  Y++C  ++ AR LFDEIP+ N+  W ++   
Sbjct: 102 LCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISG 161

Query: 154 YARRGYHQEAVTVFHE-----------MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           Y +    +EAV +F E           +   G+  +  ++  V+ AC  +      E +H
Sbjct: 162 YVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVH 221

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
            L +K  F     V ++L+D Y+KCG +  ++KVFD M E D+ + N++++ Y Q GL+ 
Sbjct: 222 GLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSV 281

Query: 263 EALNLVEE-IGTPRVKPNVVTWNTLISGFSKSG---------DQV--------------- 297
           EA +L  + +    V+ N VT + ++   + SG         DQV               
Sbjct: 282 EAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSI 341

Query: 298 -----------MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
                      M  K F  ++ K V+    SWT +++G   +    EA   F EM+  G 
Sbjct: 342 VDMYCKCGRVEMARKAFDRLKRKNVK----SWTVMVAGYGMHGHGKEAMKVFYEMIRCGI 397

Query: 347 CPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
            P   T  S+L AC+ A  ++ G    +       VE  +   S +VD+  + G++ EA 
Sbjct: 398 KPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAY 457

Query: 406 TLFDKMSER-NTVTWNSMIFGCANH 429
            L  +M  + + + W S++  C  H
Sbjct: 458 GLIQEMKVKPDFIVWGSLLGACRIH 482



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 5/273 (1%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H   +  G      +   L+  Y +C  I  +R +FD + +T++  W +L   YA+ G 
Sbjct: 220 VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGL 279

Query: 160 HQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
             EA ++F +M  +G ++ N   + +VL AC H   +  G+ IH  V+K     +  V +
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGT 339

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           S++DMY KCG VE A+K FD +  K++ +   MV+GY   G   EA+ +  E+    +KP
Sbjct: 340 SIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP 399

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDT 337
           N +T+ ++++  S +G        F  M+ +  VEP +  ++ ++  L       EA+  
Sbjct: 400 NYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGL 459

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGK 370
            +EM  +   P      S+L AC    N+  G+
Sbjct: 460 IQEMKVK---PDFIVWGSLLGACRIHKNVELGE 489



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 37/217 (17%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ GK +H Q++   L     + T ++  Y +C  +  AR  FD + + N+  W  +  
Sbjct: 315 ALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVA 374

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G+ +EA+ VF+EM   G+K N     SVL AC H   +  G         H F  
Sbjct: 375 GYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGW--------HWF-- 424

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
                              K K  FD  VE  I   + MV    + G   EA  L++E+ 
Sbjct: 425 ------------------NKMKCEFD--VEPGIEHYSCMVDLLGRAGYLKEAYGLIQEM- 463

Query: 273 TPRVKPNVVTWNTLISGFSKSGD----QVMVSKLFQL 305
             +VKP+ + W +L+       +    ++   KLF+L
Sbjct: 464 --KVKPDFIVWGSLLGACRIHKNVELGEISARKLFKL 498


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/475 (36%), Positives = 264/475 (55%), Gaps = 45/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYT--ECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K +HA +   GL +   +  KL+   T  +     + R++F ++   N   W AL   YA
Sbjct: 56  KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYA 115

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFGTDA 214
            +G   E+V +++ M  QG+    F   ++LKAC    D+  G ++H+  +L   FG+D 
Sbjct: 116 LQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDL 175

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           +V ++LIDMY KCG +    +VFDEM+++D                              
Sbjct: 176 YVGNTLIDMYVKCGCLGCGHRVFDEMLDRD------------------------------ 205

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                V++W +LI  ++K G+    S+LF  +  K    D+V+WT++++G   N    EA
Sbjct: 206 -----VISWTSLIVAYAKVGNMEAASELFDGLPMK----DMVAWTAMVTGYAQNARPREA 256

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA--IVMGVEGDLHVRSALV 392
            + F+ M + G      T+  ++ ACA     +    +   A     G   ++ V SAL+
Sbjct: 257 LEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALI 316

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           DMYAKCG + +A  +F++M ERN  +++SMI G A HG    A+ELF++M + + K + +
Sbjct: 317 DMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRV 376

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  VLTAC H G+VE GQ+LF MM+E + + P  +HYACMVDLLGRAGRL EA  ++K 
Sbjct: 377 TFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKM 436

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M   P   VWGALLGAC+ HGN ++A+IAA HL ELEP    N +LL+++YA+AG
Sbjct: 437 MPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAG 491



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 119/275 (43%), Gaps = 39/275 (14%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           +IS    L  A Y+     ++RD A QSG    + ++V          + LI  Y +C +
Sbjct: 278 VISACAQLGAAKYAN----WVRDVAEQSGFGPTSNVVV---------GSALIDMYAKCGS 324

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +  A  +F+ + + N++ + ++   +A  G    A+ +F EM    +K N      VL A
Sbjct: 325 VEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTA 384

Query: 189 CGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           C H   +  G+++ +++ + H         + ++D+  + G +E+A  +   M       
Sbjct: 385 CSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMM------P 438

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTP-----------RVKPNVVTWNTLISG-FSKSGD 295
           MN         G+    L      G P            ++PN +    L+S  ++ +G 
Sbjct: 439 MNP------HGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGR 492

Query: 296 QVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNF 329
              VSK+ +LMRAKG++ +   SW     G++H F
Sbjct: 493 WDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEF 527


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 284/550 (51%), Gaps = 43/550 (7%)

Query: 49  SDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQS--GKILHAQLIV 106
           SD G P  + IF+  H +     +  +L P  ++    I    R      G +LHA  IV
Sbjct: 88  SDNGLPK-SSIFLYTHLR-----KXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIV 141

Query: 107 SGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTV 166
            G+A    + + ++  Y +      AR +FD +P+ +   W  +   ++R  Y ++++ V
Sbjct: 142 DGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRV 201

Query: 167 FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
           F +M   GL  +   + +VL A   L +   G  I  L  K    +D +V++ LI +YSK
Sbjct: 202 FVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSK 261

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
           CG   K + +FD++ + D+++ NAM+SGY        A+ L  E+     + N  T   L
Sbjct: 262 CGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGL 321

Query: 287 ISGFSKSGDQVMVSKLFQLMRAK-GV-------------------------------EPD 314
           I  +    + + +S+L Q +  K G+                               E  
Sbjct: 322 IPVYLPF-NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKS 380

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           + SW ++ISG   N   D A   F+EM+ Q   P   T++SIL ACA    +  GK +HG
Sbjct: 381 LASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHG 439

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
                 +E +++V +ALVDMYAKCG I EAR LFD M ++N VTWN+MI G   HG+  E
Sbjct: 440 LIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKE 499

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A++LF +M +       ++F ++L AC H GLV  G  +F+ M   Y   P +EHYACMV
Sbjct: 500 ALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMV 559

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           D+LGRAG+L  A E I+ M  EP   VWGALLGAC  H N E+A +A+K L +L+PE+  
Sbjct: 560 DILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVG 619

Query: 554 NNMLLTDLYA 563
             +LL+++Y+
Sbjct: 620 YYVLLSNIYS 629



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 220/470 (46%), Gaps = 42/470 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           + AQLI+ G+       TKL   + +   + H R LF+++ K ++  +  L   ++  G 
Sbjct: 33  IQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGL 92

Query: 160 HQEAVTVF-HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            + ++ ++ H      L+ + F     + A   L D   G  +H+  +     ++ FV S
Sbjct: 93  PKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGS 152

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR----------------GLAT 262
           +++D+Y K    E A+KVFD M E+D V  N M+SG+ +                 GL+ 
Sbjct: 153 AIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSF 212

Query: 263 EALNL------VEEIGTPR-------------VKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           ++  L      V E+   R             +  +V     LIS +SK G       LF
Sbjct: 213 DSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILF 272

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             +     +PD++S+ ++ISG   N   + A   F+E+L+ G    S+T+  ++P     
Sbjct: 273 DQID----QPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            +++  + I   ++ +G+     V +AL  +Y +   +  AR LFD+  E++  +WN+MI
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388

Query: 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
            G   +G  D AI LF +M  +   + ++ T++L+AC  +G + +G+ +  +++ + ++ 
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLE 447

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
                   +VD+  + G + EA ++   M  + ++  W A++     HG+
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGH 496


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 167/501 (33%), Positives = 274/501 (54%), Gaps = 33/501 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK++H  +I SG A    + +  +  Y +C     A  LFDE+P+ ++  W  +   Y +
Sbjct: 317 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ 376

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  ++A+ +F EM + G K +   + +V+ +C  L D+  G++IH  +++  F  D FV
Sbjct: 377 DGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV 436

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+L+DMY KCG +E AK+VF+++  K++V+ N+M++GY  +G +   + L   +    +
Sbjct: 437 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 496

Query: 277 KPNVVTWNTLISGFSKS-------------------GDQVMVSKLFQLMRAKG------- 310
           +P + T ++++   S+S                    D  + S L  L    G       
Sbjct: 497 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 556

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 + +VVSW  +ISG V      EA   F +M   G  P + T +S+LPAC+  A 
Sbjct: 557 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 616

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + +GKEIH   I   +E +  V  AL+DMYAKCG + EA  +F+++ ER+ V+W SMI  
Sbjct: 617 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAA 676

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
             +HG   EA++LF +M++   K D ++F A+L+AC H GLV+ G   FN M  +Y   P
Sbjct: 677 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKP 736

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMI-KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
             EHY+C++DLLGR GRL EAYE++ +T     D+ +   L  AC  H  ++L E   + 
Sbjct: 737 AVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRL 796

Query: 544 LSELEPESAANNMLLTDLYAN 564
           L E +P+  +  ++L+++YA+
Sbjct: 797 LIEKDPDDPSTYIILSNMYAS 817



 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 232/471 (49%), Gaps = 36/471 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALTGAYA 155
           GK++H +++  GL     +   LI  Y  C     A+++F  I    +I  W  L  A  
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273

Query: 156 RRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           +     E + VFH + H   LK + F  PSVLKAC  L  +G G+ +H+ V+K  F  D 
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDV 333

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            V+SS + MY+KC   E A K+FDEM E+D+ + N ++S Y Q G   +AL L EE+   
Sbjct: 334 VVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVS 393

Query: 275 RVKPNVVTWNTLIS--------------------------GFSKSGDQVMVSKLFQLMRA 308
             KP+ VT  T+IS                          GF  S    M  K   L  A
Sbjct: 394 GFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMA 453

Query: 309 KGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           K V       +VVSW S+I+G      +    + F+ M  +G  PT  T+SSIL AC+ +
Sbjct: 454 KEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRS 513

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            N++ GK IHG  I   VE D+ V S+L+D+Y KCG I  A  +F  M + N V+WN MI
Sbjct: 514 VNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMI 573

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G    G   EA+ +F  M +   K D ++FT+VL AC  + ++E G+ + N + E  K+
Sbjct: 574 SGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES-KL 632

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
                    ++D+  + G + EA  +   +  E D   W +++ A  +HG 
Sbjct: 633 EINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQ 682



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 177/374 (47%), Gaps = 34/374 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H +L+ SG A    +++ L+  Y +C  +  A+ +F++I + N+  W ++   
Sbjct: 415 LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAG 474

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y+ +G  +  + +F  M  +G++  +  + S+L AC    ++  G+ IH  ++++    D
Sbjct: 475 YSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEAD 534

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV SSLID+Y KCG++  A+ VF  M + ++V+ N M+SGYV+ G   EAL +  ++  
Sbjct: 535 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 594

Query: 274 PRVKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV--- 311
             VKP+ +T+ +++   S+                     ++V++  L  +    G    
Sbjct: 595 AGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDE 654

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E D VSWTS+I+    +    EA   F++M      P   T  +IL AC+ 
Sbjct: 655 ALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSH 714

Query: 363 AANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWN 420
           A  +  G       I   G +  +   S L+D+  + G + EA  +  +  + R  V   
Sbjct: 715 AGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLL 774

Query: 421 SMIF-GCANHGYCD 433
           S +F  C  H   D
Sbjct: 775 STLFSACHLHKKLD 788



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 162/325 (49%), Gaps = 4/325 (1%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   LQ GK +H  +I + +     + + LI  Y +C NI  A  +F  +PKTN+  W  
Sbjct: 512 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 571

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y + G + EA+ +F +M   G+K +     SVL AC  L+ +  G++IH+ +++  
Sbjct: 572 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 631

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +  V+ +L+DMY+KCG+V++A  +F+++ E+D V+  +M++ Y   G A EAL L E
Sbjct: 632 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 691

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHN 328
           ++     KP+ VT+  ++S  S +G        F  M A+ G +P V  ++ +I  L   
Sbjct: 692 KMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRV 751

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               EA++  +   +         +S++  AC     +  G++I G  ++     D    
Sbjct: 752 GRLREAYEILQR--TPDIREDVGLLSTLFSACHLHKKLDLGEQI-GRLLIEKDPDDPSTY 808

Query: 389 SALVDMYAKCGFISEARTLFDKMSE 413
             L +MYA      E R +  K+ E
Sbjct: 809 IILSNMYASVKKWDEVRKVRLKIKE 833


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 178/507 (35%), Positives = 279/507 (55%), Gaps = 36/507 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +Q  K +HA+ I+S L+    I TK+I  +     + +A  +F++  + +   + A+  A
Sbjct: 19  IQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRA 78

Query: 154 YARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y+       A++++++M   Q +  + +  P V KAC     +  G+++H ++++  +  
Sbjct: 79  YSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYEL 138

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-I 271
           D F+ SSL++ Y  CG +  A++VFDE   KD+V  NA+++GY ++G+  ++  + +E +
Sbjct: 139 DGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMV 198

Query: 272 GTPRVKPNVVTWNTLI-----SGFSKSGDQVMVSKLFQLMRAKGV--------------- 311
               V+PN  T   LI     S   K G  +    +  ++  +GV               
Sbjct: 199 EVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGY 258

Query: 312 ------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                       E + V W S+I G       +E  +  +EM      P   T+S +L A
Sbjct: 259 LDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSA 318

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA       G  +H  A   G+  D+ + +AL+DMYAKCGFI  AR +FD+M+ERN  TW
Sbjct: 319 CAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATW 377

Query: 420 NSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N+++ G A+HG  + AIELF++M E   + D ++F AVL AC H GLVE G++ F++M +
Sbjct: 378 NAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQ 437

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            YKI PR EHY CMVDLLGRAG L EA E+IK M  EP++ VWGALL AC  HGNIE+ E
Sbjct: 438 YYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGE 497

Query: 539 IAAKHLSELEPESAANNMLLTDLYANA 565
            AA H+ +L      + ++L +LYA+A
Sbjct: 498 WAAHHMIKLNAMDGGSYVILANLYASA 524



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 176/372 (47%), Gaps = 34/372 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ GK +H  ++  G      + + L+ FY  C  I +A+ +FDE    ++  W AL  
Sbjct: 120 AVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALIT 179

Query: 153 AYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            YAR+G   ++  VF EM  ++ ++ N   +  ++ AC    ++  G  IH  ++K    
Sbjct: 180 GYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVL 239

Query: 212 TDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +   + ++LI++Y KCG ++ A+K+FDE+ EK+ V  N+++ GY Q G   E + L+ E
Sbjct: 240 REGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLRE 299

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------------- 311
           +    +KP+  T + ++S  ++ G   + + + +    KG+                   
Sbjct: 300 MHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFI 359

Query: 312 -----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                      E +V +W +++SG   +   + A + F EM   G  P S T  ++L AC
Sbjct: 360 GAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHAC 419

Query: 361 ASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVT 418
           A +  +  GK+     +    +   +     +VD+  + G + EAR L   M  E N V 
Sbjct: 420 AHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVV 479

Query: 419 WNSMIFGCANHG 430
           W +++  C+ HG
Sbjct: 480 WGALLSACSIHG 491


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 174/509 (34%), Positives = 274/509 (53%), Gaps = 40/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ GK LH+ L+ +G++        L+  Y +C +I  A  +F+   +TN+  W  +  A
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +     ++  +F +M   G+  N F  P +L+ C     I  GE+IHSL +K+ F +D
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESD 380

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V   LIDMYSK   ++KA+K+ + + ++D+V+  +M++GYVQ     EAL   +E+  
Sbjct: 381 MYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD 440

Query: 274 PRVKPN-----------------------------------VVTWNTLISGFSKSGDQVM 298
             V P+                                   +  WNTL++ +++ G    
Sbjct: 441 CGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEE 500

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              LF+ +  K    D ++W  +ISG   +   ++A   F +M   G      T  S + 
Sbjct: 501 AFSLFREIDHK----DEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAIS 556

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ A++++GK++HG A+  G   +  V +AL+ +Y KCG I +A+ +F +MS RN V+
Sbjct: 557 ALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS 616

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I  C+ HG   EA++LF+QM +E  K + ++F  VL AC HVGLVE G   F  M 
Sbjct: 617 WNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             Y + P  +HYAC+VD+LGRAG+L  A   +  M    +  +W  LL ACK H NIE+ 
Sbjct: 677 NVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIG 736

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E+AAKHL ELEP  +A+ +LL++ YA  G
Sbjct: 737 ELAAKHLLELEPHDSASYVLLSNAYAVTG 765



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 235/489 (48%), Gaps = 36/489 (7%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P   S  +    + +    G+++HAQ+        T +   LI  Y    +   A  +F
Sbjct: 143 TPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVF 202

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
            ++   +   +  L   +A+ G+ + A+ +F EM + GL+ +   + S+L AC  + D+ 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G+++HS +LK     D     SL+D+Y KCG +E A  +F+     ++V  N M+  Y 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLI-----SGFSKSGDQV-------------- 297
           Q     ++  +  ++    + PN  T+  ++     +G  + G+Q+              
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLV-HNFCNDEAFDTFKEMLSQ 344
                  M SK   L +A+ +     + DVVSWTS+I+G V H+FC +EA  TFKEM   
Sbjct: 383 VSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFC-EEALATFKEMQDC 441

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           G  P +  ++S   ACA    MR+G +IH    V G   D+ + + LV++YA+CG   EA
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV 463
            +LF ++  ++ +TWN +I G       ++A+ +F +M +   K +  +F + ++A  ++
Sbjct: 502 FSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANL 561

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G+++      K      TE    ++ L G+ G + +A  +   MS   ++  W  
Sbjct: 562 ADIKQGKQVHGRAV-KTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV-SWNT 619

Query: 524 LLGACKNHG 532
           ++ +C  HG
Sbjct: 620 IITSCSQHG 628



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 214/458 (46%), Gaps = 34/458 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA  +V GL     I   LI  Y +   +  AR +F E+   +   W+A+   YA+RG 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA  ++ +MH   +    +V+ SVL AC        G  IH+ V K +F ++ FV ++
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LI +Y   GS + A++VF +M+  D V  N ++SG+ Q G    AL + +E+    ++P+
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV--------HNFCN 331
            VT  +L++  +  GD     +L   +   G+  D ++  S++   V        H+  N
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 332 -----------------------DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
                                   ++F+ F +M + G  P   T   IL  C     +  
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIEL 364

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           G++IH  +I  G E D++V   L+DMY+K   + +AR + + + +R+ V+W SMI G   
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 429 HGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           H +C+EA+  F +M++     D++   +  +AC  +  +  G ++   +           
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADIS 483

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            +  +V+L  R GR  EA+ + + +    D   W  L+
Sbjct: 484 IWNTLVNLYARCGRSEEAFSLFREID-HKDEITWNGLI 520



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 46/385 (11%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH+  +    G D  + + LID+Y+K G V +A++VF E+  +D V+  AM+SGY QRG
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 260 LATEALNLVEE------IGTPRVKPNVVT-----------------------------WN 284
           L  EA  L  +      I TP V  +V++                              N
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
            LI+ +   G   +  ++F  M    +  D V++ ++ISG       + A   F EM   
Sbjct: 184 ALIALYLGFGSFKLAERVFCDM----LFCDRVTFNTLISGHAQCGHGECALQIFDEMQLS 239

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           G  P   T++S+L ACAS  ++++GK++H   +  G+  D     +L+D+Y KCG I  A
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETA 299

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV 463
             +F+     N V WN M+          ++ E+F QM+      +  ++  +L  C   
Sbjct: 300 HDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCT 359

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
           G +ELG+++ ++     K    ++ Y    ++D+  +   L +A ++++ M  + D+  W
Sbjct: 360 GQIELGEQIHSL---SIKNGFESDMYVSGVLIDMYSKYRCLDKARKILE-MLEKRDVVSW 415

Query: 522 GALLGACKNHGNIELAEIAAKHLSE 546
            +++     H   E A    K + +
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQD 440



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 109/203 (53%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A++ G  +HA++ VSG A    I   L+  Y  C     A  LF EI   +   W  L 
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLI 520

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + +   +++A+ VF +M   G K N+F   S + A  +L+DI  G+++H   +K    
Sbjct: 521 SGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHT 580

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++LI +Y KCGS+E AK +F EM  ++ V+ N +++   Q G   EAL+L +++
Sbjct: 581 SETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQM 640

Query: 272 GTPRVKPNVVTWNTLISGFSKSG 294
               +KPN VT+  +++  S  G
Sbjct: 641 KQEGLKPNDVTFIGVLAACSHVG 663


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 191/548 (34%), Positives = 282/548 (51%), Gaps = 78/548 (14%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++L  GK LH  +I  G  +   I  KL+TFYT    +  A  + +     +   W  L 
Sbjct: 107 KSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLI 166

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            +Y R G H EA++ + +M  +G++ + F  PSVLKACG   DI  G+K+H+ +     G
Sbjct: 167 SSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLG 226

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD--------------------------- 244
            + FV +SL+ MY+K G +  A+ +F+ M+E+D                           
Sbjct: 227 WNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKM 286

Query: 245 --------IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------- 283
                   I+  N +  G VQ G   EAL L+  + +  +  + V               
Sbjct: 287 RVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAI 346

Query: 284 ----------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
                                 N LI+ +S+         LFQ  R K    ++++W S+
Sbjct: 347 KLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTK----NIITWNSM 402

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV--M 379
           +SG  H   ++EA   F+EML  G  P   TI+SILP CA  AN++ GKE H C I+   
Sbjct: 403 LSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFH-CYILRRA 461

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           G +  L + ++LVDMYA+ G + EA+ LFD +S R+ VT+ S+I G    G   EA++LF
Sbjct: 462 GFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLF 521

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           ++M++R  K DH++  AVL+AC H GLV  G +LF +M   Y I+PR EH+ACMVDL GR
Sbjct: 522 DEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGR 581

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           AG L +A EMI  M   P   +W  LLGAC+ HGN E+ E AA+ L E+ PE++   +L+
Sbjct: 582 AGLLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLI 641

Query: 559 TDLYANAG 566
            ++YA AG
Sbjct: 642 ANMYAAAG 649



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 172/395 (43%), Gaps = 67/395 (16%)

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
           +L  +  G+++H+L++   F     +V  L+  Y+    +  A  + +       +  N 
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNL 164

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------------------------- 283
           ++S YV+ GL  EAL+  +++    ++P+  T+                           
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC 224

Query: 284 --------NTLISGFSKSGD-------------------QVMVS------------KLFQ 304
                   N+L+S ++K+G+                     M+S            +LF 
Sbjct: 225 LGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFG 284

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            MR +G+E ++++W ++  G V +   +EA +    M S G    S      L AC+   
Sbjct: 285 KMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIG 344

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            ++ G+EIHG AI    +G  +V++AL+ MY++C ++  A  LF     +N +TWNSM+ 
Sbjct: 345 AIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLS 404

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G  +    +EA  LF +M     + ++++  ++L  C  V  ++ G+     +  +    
Sbjct: 405 GYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFK 464

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
                +  +VD+  R+G++ EA  +  ++S   ++
Sbjct: 465 DYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEV 499


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/501 (33%), Positives = 274/501 (54%), Gaps = 63/501 (12%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I +AR +FD+IP  +     +   AY+R   + EA+  F  MH   ++   F IP + K+
Sbjct: 46  IQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKS 105

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMY------------------------ 224
           C  L  I  G+++HSLV+++ F +  F  ++LI+ Y                        
Sbjct: 106 CASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAY 165

Query: 225 -------SKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
                  S+ G V  A+++FD+M ++ IV+ NAM+S Y Q G   +   + + +     +
Sbjct: 166 NCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCE 225

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-------------------------- 311
           PN +T  T++S  +K GD  M  ++ +L   K +                          
Sbjct: 226 PNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 285

Query: 312 -----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                  DVV+W+++I+G   N  ++EA + F+ M S    P   T+ S+L ACA   ++
Sbjct: 286 FDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSV 345

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G+ I       G+  +++V SAL+ MY+KCG I +AR +FDK+ +R+ VTWNSMI G 
Sbjct: 346 ETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGL 405

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
           A +G+ ++AI L+N+M+E + K ++++F  ++TAC H G VELG   F  M+  + I P 
Sbjct: 406 AINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPN 465

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
            EH+AC+VDL  R+GRL +AYE I  M  EP++ +WG LL A + H N+ELAE+A K L 
Sbjct: 466 IEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLL 525

Query: 546 ELEPESAANNMLLTDLYANAG 566
           ELEP+++ N ++L+++YA+AG
Sbjct: 526 ELEPDNSGNYVILSNIYASAG 546



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 183/389 (47%), Gaps = 39/389 (10%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK-LITFYTECQ 127
           +I   FH S    +  I  Y +   L S     A+LI  G+     IA   LI+ Y+   
Sbjct: 122 VIRYGFHSSVFCQNALINFYAKINDLGS-----AELIFDGILVKDTIAYNCLISAYSRSG 176

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
            +  AR LFD++   +I  W A+   YA+ G + +   +F  M  +  + N   + +VL 
Sbjct: 177 EVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLS 236

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
            C  L D+  G +I  L    + G++  V +++++MY KCG+V+  + VFD M  +D+V 
Sbjct: 237 ICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVT 296

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQV----- 297
            +AM++GY Q G + EAL L E + + ++KPN VT  +++S     G  ++G+++     
Sbjct: 297 WSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVE 356

Query: 298 ----------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFD 336
                           M SK   +++A+ +     + D V+W S+I GL  N   ++A  
Sbjct: 357 SRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIA 416

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMY 395
            +  M      P + T   ++ AC  A ++  G E          +  ++   + +VD++
Sbjct: 417 LYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLF 476

Query: 396 AKCGFISEARTLFDKMS-ERNTVTWNSMI 423
            + G + +A     +M  E N V W +++
Sbjct: 477 CRSGRLIDAYEFICRMEVEPNVVIWGTLL 505


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 167/501 (33%), Positives = 274/501 (54%), Gaps = 33/501 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK++H  +I SG A    + +  +  Y +C     A  LFDE+P+ ++  W  +   Y +
Sbjct: 125 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ 184

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  ++A+ +F EM + G K +   + +V+ +C  L D+  G++IH  +++  F  D FV
Sbjct: 185 DGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV 244

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+L+DMY KCG +E AK+VF+++  K++V+ N+M++GY  +G +   + L   +    +
Sbjct: 245 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 304

Query: 277 KPNVVTWNTLISGFSKS-------------------GDQVMVSKLFQLMRAKG------- 310
           +P + T ++++   S+S                    D  + S L  L    G       
Sbjct: 305 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 364

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 + +VVSW  +ISG V      EA   F +M   G  P + T +S+LPAC+  A 
Sbjct: 365 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 424

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + +GKEIH   I   +E +  V  AL+DMYAKCG + EA  +F+++ ER+ V+W SMI  
Sbjct: 425 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAA 484

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
             +HG   EA++LF +M++   K D ++F A+L+AC H GLV+ G   FN M  +Y   P
Sbjct: 485 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKP 544

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMI-KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
             EHY+C++DLLGR GRL EAYE++ +T     D+ +   L  AC  H  ++L E   + 
Sbjct: 545 AVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRL 604

Query: 544 LSELEPESAANNMLLTDLYAN 564
           L E +P+  +  ++L+++YA+
Sbjct: 605 LIEKDPDDPSTYIILSNMYAS 625



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 159/479 (33%), Positives = 236/479 (49%), Gaps = 36/479 (7%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRW 147
           I  + L+ GK++H +++  GL     +   LI  Y  C     A+++F  I    +I  W
Sbjct: 14  IDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLW 73

Query: 148 IALTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
             L  A  +     E + VFH + H   LK + F  PSVLKAC  L  +G G+ +H+ V+
Sbjct: 74  NGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVI 133

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K  F  D  V+SS + MY+KC   E A K+FDEM E+D+ + N ++S Y Q G   +AL 
Sbjct: 134 KSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALE 193

Query: 267 LVEEIGTPRVKPNVVTWNTLIS--------------------------GFSKSGDQVMVS 300
           L EE+     KP+ VT  T+IS                          GF  S    M  
Sbjct: 194 LFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYG 253

Query: 301 KLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
           K   L  AK V       +VVSW S+I+G      +    + F+ M  +G  PT  T+SS
Sbjct: 254 KCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSS 313

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           IL AC+ + N++ GK IHG  I   VE D+ V S+L+D+Y KCG I  A  +F  M + N
Sbjct: 314 ILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN 373

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+WN MI G    G   EA+ +F  M +   K D ++FT+VL AC  + ++E G+ + N
Sbjct: 374 VVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHN 433

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            + E  K+         ++D+  + G + EA  +   +  E D   W +++ A  +HG 
Sbjct: 434 FIIES-KLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQ 490



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 177/374 (47%), Gaps = 34/374 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H +L+ SG A    +++ L+  Y +C  +  A+ +F++I + N+  W ++   
Sbjct: 223 LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAG 282

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y+ +G  +  + +F  M  +G++  +  + S+L AC    ++  G+ IH  ++++    D
Sbjct: 283 YSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEAD 342

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV SSLID+Y KCG++  A+ VF  M + ++V+ N M+SGYV+ G   EAL +  ++  
Sbjct: 343 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 402

Query: 274 PRVKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV--- 311
             VKP+ +T+ +++   S+                     ++V++  L  +    G    
Sbjct: 403 AGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDE 462

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E D VSWTS+I+    +    EA   F++M      P   T  +IL AC+ 
Sbjct: 463 ALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSH 522

Query: 363 AANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWN 420
           A  +  G       I   G +  +   S L+D+  + G + EA  +  +  + R  V   
Sbjct: 523 AGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLL 582

Query: 421 SMIF-GCANHGYCD 433
           S +F  C  H   D
Sbjct: 583 STLFSACHLHKKLD 596



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 162/325 (49%), Gaps = 4/325 (1%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   LQ GK +H  +I + +     + + LI  Y +C NI  A  +F  +PKTN+  W  
Sbjct: 320 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 379

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y + G + EA+ +F +M   G+K +     SVL AC  L+ +  G++IH+ +++  
Sbjct: 380 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 439

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +  V+ +L+DMY+KCG+V++A  +F+++ E+D V+  +M++ Y   G A EAL L E
Sbjct: 440 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 499

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHN 328
           ++     KP+ VT+  ++S  S +G        F  M A+ G +P V  ++ +I  L   
Sbjct: 500 KMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRV 559

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               EA++  +   +         +S++  AC     +  G++I G  ++     D    
Sbjct: 560 GRLREAYEILQR--TPDIREDVGLLSTLFSACHLHKKLDLGEQI-GRLLIEKDPDDPSTY 616

Query: 389 SALVDMYAKCGFISEARTLFDKMSE 413
             L +MYA      E R +  K+ E
Sbjct: 617 IILSNMYASVKKWDEVRKVRLKIKE 641



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 180/388 (46%), Gaps = 56/388 (14%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+LK C     +  G+ IH  ++      +  +  SLI++Y  C   + AK VF  +   
Sbjct: 8   SLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENP 67

Query: 244 -DIVAMNAMVSGYVQRGLATEALNLVEE-IGTPRVKPNVVTWNTLI---SGFSKSG---- 294
            DI   N +++   +  +  E L +    +  P +KP+  T+ +++   SG  + G    
Sbjct: 68  LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKM 127

Query: 295 ------------DQVMVS----------------KLFQLMRAKGVEPDVVSWTSVISGLV 326
                       D V++S                KLF  M     E DV SW +VIS   
Sbjct: 128 VHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMP----ERDVASWNNVISCYY 183

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
            +   ++A + F+EM   GF P S T+++++ +CA   ++ RGKEIH   +  G   D  
Sbjct: 184 QDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGF 243

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-- 444
           V SALVDMY KCG +  A+ +F+++  +N V+WNSMI G +  G     IELF +M+E  
Sbjct: 244 VSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEG 303

Query: 445 -RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRA 499
            R  L  LS  ++L AC     ++LG+ +       Y I  R E      + ++DL  + 
Sbjct: 304 IRPTLTTLS--SILMACSRSVNLQLGKFIHG-----YIIRNRVEADIFVNSSLIDLYFKC 356

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           G +  A  + + M  + ++  W  ++  
Sbjct: 357 GNIGSAENVFQNMP-KTNVVSWNVMISG 383


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 293/529 (55%), Gaps = 32/529 (6%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           +P+ + S+  S   + ER++   +   L   K LHAQ+I   L     IA KLI+  + C
Sbjct: 5   LPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLC 64

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
           +  + A  +F+++ + N+H   +L  A+A+     +A  VF EM   GL  + F  P +L
Sbjct: 65  RQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLL 124

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS--VEKAKKVFDEMVEKD 244
           KAC   S +   + +H+ + K    +D +V ++LID YS+CG   V  A K+F++M E+D
Sbjct: 125 KACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD 184

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEI-------------GTPRVKP------------- 278
            V+ N+M+ G V+ G   +A  L +E+             G  R +              
Sbjct: 185 TVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPE 244

Query: 279 -NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
            N V+W+T++ G+SK+GD  M   +F  M       +VV+WT +I+G        EA   
Sbjct: 245 RNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPA--KNVVTWTIIIAGYAEKGLLKEADRL 302

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
             +M++ G    +A + SIL AC  +  +  G  IH       +  + +V +AL+DMYAK
Sbjct: 303 VDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAK 362

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAV 456
           CG + +A  +F+ + +++ V+WN+M+ G   HG+  EAIELF++M  E  + D ++F AV
Sbjct: 363 CGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAV 422

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L +C H GL++ G   F  M++ Y ++P+ EHY C+VDLLGR GRL EA ++++TM  EP
Sbjct: 423 LCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEP 482

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           ++ +WGALLGAC+ H  +++A+    +L +L+P    N  LL+++YA A
Sbjct: 483 NVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAA 531


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 172/506 (33%), Positives = 276/506 (54%), Gaps = 35/506 (6%)

Query: 96  SGKILHAQLIVSGLARLTQIAT-KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           S   LHA  +  GL R +   +  L+  Y     I  A  +FDE+ + ++  W A+    
Sbjct: 85  SAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGL 144

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            R     EAV +F  M  +G+  +   + SVL  C  L D      +H   +KH    + 
Sbjct: 145 CRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKEL 204

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           FV ++LID+Y K G +E+A+ VF  M  +D+V  N+++SG  QRG    AL + + +   
Sbjct: 205 FVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGS 264

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE---------------------- 312
            V P+V+T  +L S  ++ GD      L   +  +G +                      
Sbjct: 265 GVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEA 324

Query: 313 ----------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPACA 361
                      D VSW ++I+G + N   +EA + +  M   +G      T  S+LPA +
Sbjct: 325 AQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYS 384

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
               +++G  +H  +I +G+  D++V + L+D+YAKCG ++EA  LF+KM  R+T  WN+
Sbjct: 385 HLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNA 444

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G   HG+  EA+ LF++M++   K DH++F ++L AC H GLV+ G+  F++MQ  Y
Sbjct: 445 IISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTY 504

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I+P  +HYACM D+LGRAG+L EA+  I+ M  +PD  VWGALLGAC+ HGN+E+ ++A
Sbjct: 505 DIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVA 564

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           +++L EL+PE+    +L++++YA  G
Sbjct: 565 SQNLFELDPENVGYYVLMSNMYAKVG 590



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 16/237 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  +HA  I  GL     + T LI  Y +C  +  A +LF+++P+ +   W A+  
Sbjct: 388 ALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIIS 447

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV-LKHSFG 211
                G+  EA+T+F  M  +G+K +     S+L AC H   +  G     ++ + +   
Sbjct: 448 GLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIV 507

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM-----VSGYVQRGLATEAL 265
             A   + + DM  + G +++A      M ++ D     A+     + G V+ G    + 
Sbjct: 508 PIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMG-KVASQ 566

Query: 266 NLVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           NL E      + P  V +  L+S  ++K G    V ++  L+R + ++     W+S+
Sbjct: 567 NLFE------LDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQ-KTPGWSSI 616


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 178/474 (37%), Positives = 261/474 (55%), Gaps = 10/474 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFY-TECQNIHHARMLFDEIPKTNIHRWIAL 150
           ++ +  K +HAQLI++G  + T IATK +  Y    +NI +A  +F  I   + + W  +
Sbjct: 38  KSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTM 97

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +      ++A+  +  M  +G++ N F    VLKA G       G  +H  ++K  F
Sbjct: 98  IRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGF 157

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D F  ++LI MY KCGS+  A  +FDEM   ++V  N M++G    G    A  L  E
Sbjct: 158 CYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGE 217

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
           +     + NV +WN ++ G+SK G   +   LF LM     E DVVSW S+IS  V N  
Sbjct: 218 MP----ERNVGSWNAVVGGYSKLGHVDIARSLFDLMP----ERDVVSWGSMISAYVQNGR 269

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA + FKEM+  G    S  I+SIL ACA    +  G+ IH       +  D+ + +A
Sbjct: 270 AAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTA 329

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
           LVDMYAKCG I  A  +F+ M  +N  +WN+M+ G A HG+   A+ELF QME      +
Sbjct: 330 LVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPN 389

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++F AVL+AC H+G VE G + FN M +++ I P+ EHY CMVD+L R G + EA EMI
Sbjct: 390 DITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMI 449

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           +TM  EP++ +WGALL ACK HG   + E    ++ +L  E     +LL++++A
Sbjct: 450 RTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFA 503


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 180/478 (37%), Positives = 269/478 (56%), Gaps = 22/478 (4%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYT---ECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           +HAQ+I + L       ++LI F +       + +A  +F  I   N   + AL   ++ 
Sbjct: 25  IHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSD 84

Query: 157 RGYHQEAVTVFHEM-----HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
                E++ ++  M     +  G++   F IPSVLKACG L     G ++H  VLK    
Sbjct: 85  TSNPVESLILYARMLSCLNYSSGVE---FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLW 141

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D FV +S++ MY   G +E A++VFD M  +D+V+ N+M++GY++ G    A  L +E+
Sbjct: 142 FDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEM 201

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + ++V+ N +I G+ K G   +  K+F+ M  K    DVV+WTS+IS  V N C 
Sbjct: 202 ----PERDLVSCNAMIDGYGKCGRCELAEKVFETMSDK----DVVTWTSMISAYVQNRCP 253

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSA 390
            +A D F+EMLS G  P    I S+L A A    +  GK +H    +  +E     + SA
Sbjct: 254 MKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSA 313

Query: 391 LVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           L+DMY+KCG+I  A  +F  +S  RN   WNSMI G A HG   EA+++F +ME    + 
Sbjct: 314 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 373

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           + ++F  +L+ C H GLVE GQ  F  M EKYKI+PR +HY CM+DL GRAGRL +A  +
Sbjct: 374 NEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV 433

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I+ M  E DL  W A+L A   HG+IE+ + AA    EL P+ +++ +LL+++YA AG
Sbjct: 434 IQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAG 491



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 145/376 (38%), Gaps = 74/376 (19%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A   G+ +H Q++ + L     +   ++  Y +   I  AR +FD +P  ++  W ++  
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIA 183

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G  + A  +F EM  +                                       
Sbjct: 184 GYLKAGEIELASELFDEMPER--------------------------------------- 204

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    +++ID Y KCG  E A+KVF+ M +KD+V   +M+S YVQ     +AL+L  E+ 
Sbjct: 205 DLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREML 264

Query: 273 TPRVKPN-------------------------VVTWNT--LISGFSKSGDQVMVSK---- 301
           +  ++P+                          V+ N   L SGF  S    M SK    
Sbjct: 265 SLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYI 324

Query: 302 --LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
              + + R+     ++  W S+ISGL  +    EA D F EM      P   T   +L  
Sbjct: 325 ENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLST 384

Query: 360 CASAANMRRGK-EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
           C+    +  G+           +   +     ++D++ + G + +A  +   M  E + +
Sbjct: 385 CSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLL 444

Query: 418 TWNSMIFGCANHGYCD 433
            W +++     HG+ +
Sbjct: 445 AWKAILSASMKHGHIE 460



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 120/254 (47%), Gaps = 17/254 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALT 151
           ++ GK LHA + ++ +   +  I + LI  Y++C  I +A  +F  I  + NI  W ++ 
Sbjct: 288 VEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMI 347

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSF 210
              A  G  +EA+ +F EM    ++ N      +L  C H   +  G+    S+  K+  
Sbjct: 348 SGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKI 407

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS-----GYVQRGLATEA 264
                    +ID++ + G +E A  V   M  E D++A  A++S     G+++ G  + A
Sbjct: 408 VPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIG-KSAA 466

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           L  +E      + P+  +   L+S  ++K+G    V+K+  +MR +GV+      + ++ 
Sbjct: 467 LRAIE------LAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVB 520

Query: 324 GLVHNFCNDEAFDT 337
           G VH F   +  D+
Sbjct: 521 GKVHEFLXGKELDS 534


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 170/453 (37%), Positives = 249/453 (54%), Gaps = 42/453 (9%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHR----WIALTGAYARRGYHQEAVTVFHEMHIQ- 173
           +I  Y E  ++  A+ LFD +    I R    W ++   Y R     EA ++F  M ++ 
Sbjct: 369 MIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEE 428

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G++ + F + SVL AC     +  G++IH+  +     +D FV  +L++MYSKC  +  A
Sbjct: 429 GIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAA 488

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           +  FDE++EKD                                   V TWN LISG+++S
Sbjct: 489 QVAFDEVMEKD-----------------------------------VPTWNALISGYTRS 513

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
                +  L + M+  G  P++ +W S+++GLV N   D     F EM      P   T+
Sbjct: 514 NQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTV 573

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
             ILPAC+  A + RGK+ H  +I  G + D+H+ +ALVDMYAKCG +  A+  +D++S 
Sbjct: 574 GIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISN 633

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL 472
            N V+ N+M+  CA HG+ +E I LF  M     + DH++F +VL++C HVG VE G   
Sbjct: 634 PNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEF 693

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F++M   Y + P  +HY  MVDLL R+G+L EAYE+IK M  E D  +WGALLG C  HG
Sbjct: 694 FDLMG-YYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHG 752

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           NIEL EIAA+ L ELEP ++ N +LL +L+A A
Sbjct: 753 NIELGEIAAERLIELEPNNSGNYVLLANLHAYA 785



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 222/461 (48%), Gaps = 52/461 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +HA  I +G      I TKL+  Y  C  +  A  LF+ +P  N+H W A+   Y  
Sbjct: 78  GKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLD 137

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  +EA  +F  +   G++ + FV P V KAC  L  +  G ++H LV+K  F  + +V
Sbjct: 138 HGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYV 197

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LIDMY KCGS++ AKKV  +M E+D V  N++++     G+  EAL  +E++ +   
Sbjct: 198 SNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDY 257

Query: 277 K-PNVVTWNTLISGFSKSG-DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
             PNVV+W+ +I GF+++G D+  +  LF+                              
Sbjct: 258 SMPNVVSWSAVIGGFAQNGYDEEAIEMLFR------------------------------ 287

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
                 M  +G  P + T++ +LPACA    +  GK++HG         +  V +ALVD+
Sbjct: 288 ------MQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDV 341

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME----ERKKLDH 450
           Y +CG +  A  +F K S +N ++ N+MI G    G   +A ELF+ M+    ER     
Sbjct: 342 YRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGL--- 398

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY-----ACMVDLLGRAGRLAEA 505
           +S+ ++++      + +    +F  M  +  I P +        AC   +  R G+   A
Sbjct: 399 ISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHA 458

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
             ++K + +  D FV GAL+       ++  A++A   + E
Sbjct: 459 QAIVKGLQS--DTFVGGALVEMYSKCQDLTAAQVAFDEVME 497


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 290/536 (54%), Gaps = 47/536 (8%)

Query: 68  PIISRSFHLSP---AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
           P+   SF   P   AA        +   AL+ G +LH  +  SG          L+  Y 
Sbjct: 64  PLRPDSFTFPPLVRAAPGPASAAQLHACALRLG-LLHPNVFASG---------SLVHAYL 113

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
               +  A  +FDE+P+ ++  W A+     R     +AVT+   M  +G+  +   + S
Sbjct: 114 RFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSS 173

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL  C  L D      +H   +KH    + FV ++LID+Y K G + +A  VF  M  +D
Sbjct: 174 VLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRD 233

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV------- 297
           +V  N+++S   Q G    A+ L   +    V P+V+T  +L S  ++ GD++       
Sbjct: 234 LVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHC 293

Query: 298 --------------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCND 332
                               M +K+ ++  A+ V     + DVVSW ++I+G + N   +
Sbjct: 294 YVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLAN 353

Query: 333 EAFDTFKEMLS-QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           EA   + +M + +G  P   T  S+LPA +    +++G  +H  +I  G+  D++V + L
Sbjct: 354 EAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCL 413

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           +D+YAKCG + EA  LF+ M  R+T  WN++I G   HG+  +A+ LF+QM++ + K DH
Sbjct: 414 IDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDH 473

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F ++L AC H GLV+ G+  F++MQ  Y I+P  +HY CMVD+LGRAG+L EA+E I+
Sbjct: 474 VTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQ 533

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +M  +PD  VWGALLGAC+ HGN+E+ ++A+++L EL+PE+    +L++++YA  G
Sbjct: 534 SMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIG 589


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 184/570 (32%), Positives = 286/570 (50%), Gaps = 101/570 (17%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           + +HA +I SG +    I  +LI  Y +C ++   R LFD++P+ N+  W ++     + 
Sbjct: 40  RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL 99

Query: 158 GYHQEAVTVFHE-------------------------------MHIQGLKQNIFVIPSVL 186
           G+  EA ++F                                 MH +G   N +   S L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
            AC  L+D+  G +IHSL+ K    +D ++ S+L+DMYSKCG+V  A++VFDEM ++++V
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVV 219

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG----------------- 289
           + N++++ Y Q G A EAL + + +    V+P+ VT  ++IS                  
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279

Query: 290 --FSKSGDQVMVSKLFQLMRAKGVE-------------PDVVSWTSVIS----------- 323
               K  + +++S  F  M AK                 +V++ TS++S           
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAA 339

Query: 324 --------------------GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                               G   N  N+EA   F  +  +  CPT  T ++IL ACA  
Sbjct: 340 RLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADL 399

Query: 364 ANMRRGKEI------HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           A++  G +       HG     G E D+ V ++L+DMY KCG + E   +F KM ER+ V
Sbjct: 400 ADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCV 459

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WN+MI G A +GY +EA+ELF +M +  +K DH++   VL+AC H G VE G+  F+ M
Sbjct: 460 SWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSM 519

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
              + + P  +HY CMVDLLGRAG L EA  +I+ M  +PD  +WG+LL ACK H NI L
Sbjct: 520 TRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITL 579

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +  A+ L E+E  ++   +LL+++YA  G
Sbjct: 580 GKYVAEKLFEVETSNSGPYVLLSNMYAELG 609



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 37/217 (17%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P +  + S +    SA ++R    +H   I  G   ++ +++ L+D YAKCG + + R L
Sbjct: 21  PFAKLLDSCIKLKLSAIDVRC---VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQL 77

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK-------------------- 447
           FDKM +RN  TWNS++ G    G+ DEA  LF  M ER +                    
Sbjct: 78  FDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137

Query: 448 ------------LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
                       L+  +F + L+AC  +  +  G ++ +++  K   +      + +VD+
Sbjct: 138 YYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIA-KSPCLSDVYIGSALVDM 196

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             + G + +A ++   M  + ++  W +L+   + +G
Sbjct: 197 YSKCGNVNDAQQVFDEMG-DRNVVSWNSLITCYEQNG 232



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 15/223 (6%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +   LI  Y +C  +    ++F ++ + +   W A+   +A+ GY  EA+ +F EM   G
Sbjct: 429 VGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSG 488

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEK 232
            K +   +  VL ACGH   +  G    S  +   FG        + ++D+  + G +E+
Sbjct: 489 EKPDHITMIGVLSACGHAGFVEEGRHYFS-SMTRDFGVAPLRDHYTCMVDLLGRAGFLEE 547

Query: 233 AKKVFDEM-VEKDIVAMNAMVSG-YVQRG--LATEALNLVEEIGTPRVKPNVVTWNTLIS 288
           AK + +EM V+ D V   ++++   V R   L       + E+ T    P V+  N + +
Sbjct: 548 AKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSN-MYA 606

Query: 289 GFSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVISGLVHNF 329
              K GD + V K   LMR +GV  +P   SW   I G  H F
Sbjct: 607 ELGKWGDAMNVRK---LMRKEGVTKQPG-CSWIK-IPGHAHVF 644


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/553 (31%), Positives = 286/553 (51%), Gaps = 62/553 (11%)

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM 134
            L    YS  +++    ++L  GK +H+ +  + +A    +  KL++ Y  C ++   R 
Sbjct: 96  ELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRR 155

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH-------------------------- 168
           +FD + K N++ W  +   YA+ G  +E++ +F                           
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 169 -------------------------EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
                                    +M   G+  ++  I SVL  C +   +  G+ +HS
Sbjct: 216 VISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
           L +K +F       ++L+DMYSKCG ++ A +VF++M E+++V+  +M++GY + G +  
Sbjct: 276 LAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           A+ L++++    VK +VV   +++   ++SG       +   ++A  +E ++    +++ 
Sbjct: 336 AIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFC----------PTSATISSILPACASAANMRRGKEIH 373
                   D A   F  M+ +             P S T++ ILPACAS + + RGKEIH
Sbjct: 396 MYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIH 455

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
           G  +  G   D HV +ALVD+Y KCG +  AR LFD +  ++ V+W  MI G   HGY +
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGN 515

Query: 434 EAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           EAI  FN+M +   + D +SF ++L AC H GL+E G R F +M+  + I P+ EHYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           VDLL R G L++AYE I+T+   PD  +WGALL  C+ + +IELAE  A+ + ELEPE+ 
Sbjct: 576 VDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENT 635

Query: 553 ANNMLLTDLYANA 565
              +LL ++YA A
Sbjct: 636 GYYVLLANIYAEA 648


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/518 (34%), Positives = 275/518 (53%), Gaps = 48/518 (9%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF-DEIPKTNIHRWIAL 150
           + L  GK LH+ +I  G +      T LI  Y++C  +  A ++F D   + N+  + A+
Sbjct: 25  QNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAI 84

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +   G   +    + +M ++G+  + +  P V++ C  + ++   +KIH  +LK   
Sbjct: 85  ISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLLKMGL 141

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D FV S+L++ Y K GS+E A+KVF E+  +D+V  NAM++GY + G   EAL +   
Sbjct: 142 ELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRR 201

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGD------------------QVMVSKLFQLMRAKGV- 311
           +    V P+  T   ++S F+  GD                   V VS     M  K   
Sbjct: 202 MHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKH 261

Query: 312 ------------EPDVVSWTSVISGLVHNFCNDE--AFDTFKEMLSQGFCPTSATISSIL 357
                       E D+ SW S+IS  VH  C D       F +ML  G  P   TI+++L
Sbjct: 262 IGDALIIFEMINEKDIFSWNSIIS--VHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVL 319

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGD--------LHVRSALVDMYAKCGFISEARTLFD 409
           PAC+  A +  G+EIHG  I+ G+  D        L V +A++DMYAKCG ++ A  +FD
Sbjct: 320 PACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFD 379

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVEL 468
            MS+++  +WN MI G   HGY  EA+ +F+QM E   K + ++   VL+AC H G V  
Sbjct: 380 SMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSH 439

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G+     M+  + ++P  EHY C++D+LGRAG L +AYE+++ M  + +  VW ALLGAC
Sbjct: 440 GRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGAC 499

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + HGN ELAEIAA+ + +LEPE   + +L++++Y   G
Sbjct: 500 RLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIG 537



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 194/400 (48%), Gaps = 52/400 (13%)

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            N+    + L++C    ++  G+++HSL++ + F      ++SLI+MYSKCG + +A  V
Sbjct: 9   NNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILV 68

Query: 237 F-DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------ 283
           F D   E+++ A NA++SG+V  GLA++     +++    V P+  T+            
Sbjct: 69  FYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVME 128

Query: 284 --------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                               + L++ + K+G      K+F  +  +    DVV W ++I+
Sbjct: 129 VKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIR----DVVLWNAMIN 184

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G     C DEA + F+ M  +G  P+  TI+ IL   AS  ++  GK +HG  + MG + 
Sbjct: 185 GYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDS 244

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF---GCANHGYCDEAIELFN 440
            + V +AL+DMY KC  I +A  +F+ ++E++  +WNS+I     C +H   D  + LF+
Sbjct: 245 GVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDH---DGTLRLFD 301

Query: 441 QMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM-------QEKYKIMPRTEHYACM 492
           +M     L D ++ T VL AC H+  +  G+ +   M        ++   +        +
Sbjct: 302 KMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAV 361

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +D+  + G +  A ++  +MS + D+  W  ++     HG
Sbjct: 362 MDMYAKCGSMNNALKIFDSMSKK-DVASWNIMIMGYGMHG 400


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 279/505 (55%), Gaps = 32/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H +++ +GLA  T +   LI+ Y +C ++  AR +FD +   +   W  LTGA
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA  GY +E++  +H M  + ++ +     +VL ACG L+ +  G++IH+ +++  + +D
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSD 264

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L  MY KCG+ + A++VF+ +  +D++A N M+ G+V  G   EA      +  
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 274 PRVKPNVVTWNTLISGFSKSGDQV--------------------------MVSKLFQLMR 307
             V P+  T+ T++S  ++ G                             M SK   +  
Sbjct: 325 EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKD 384

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V     + DVVSWT+++          E+F TFK+ML QG      T   +L AC++
Sbjct: 385 ARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSN 444

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              ++ GKEIH   +  G+  DL V +AL+ MY KCG + +A  +F+ MS R+ VTWN++
Sbjct: 445 PVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTL 504

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G   +G   EA++ +  M+ E  + +  +F  VL+AC    LVE G+R F  M + Y 
Sbjct: 505 IGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYG 564

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I+P  +HYACMVD+L RAG L EA ++I T+  +P   +WGALL AC+ H N+E+ E AA
Sbjct: 565 IVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAA 624

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           +H  +LEP++A   + L+ +YA AG
Sbjct: 625 EHCLKLEPQNAGLYVSLSAIYAAAG 649



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 236/487 (48%), Gaps = 40/487 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y + ++  ++ + L  GK +H  ++  G+     I   L+  Y  C +++ AR LFD+  
Sbjct: 31  YVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS 90

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             ++  W  +   YA RG  QEA  +F  M  + L+ + F   S+L AC   + +  G +
Sbjct: 91  NKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IH  V++     D  V ++LI MY+KCGSV  A++VFD M  +D V+   +   Y + G 
Sbjct: 151 IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 210

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV------------------ 297
             E+L     +   RV+P+ +T+  ++S        + G Q+                  
Sbjct: 211 GEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTA 270

Query: 298 ---MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
              M  K      A+ V       DV++W ++I G V +   +EA  TF  ML +G  P 
Sbjct: 271 LTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPD 330

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
            AT +++L ACA    + RGKEIH  A   G+  D+   +AL++MY+K G + +AR +FD
Sbjct: 331 RATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFD 390

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIE---LFNQM-EERKKLDHLSFTAVLTACCHVGL 465
           +M +R+ V+W +++     +  CD+ +E    F QM ++  K + +++  VL AC +   
Sbjct: 391 RMPKRDVVSWTTLL---GRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVA 447

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           ++ G+ +   +  K  ++        ++ +  + G + +A  + + MS   D+  W  L+
Sbjct: 448 LKWGKEIHAEVV-KAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLI 505

Query: 526 GACKNHG 532
           G    +G
Sbjct: 506 GGLGQNG 512



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 201/408 (49%), Gaps = 43/408 (10%)

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            + G++  A  V   +H +G + + +    +L++C    D+  G+++H  +L+     + 
Sbjct: 5   GKDGWYAPA-DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNV 63

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           ++ ++L+ +Y+ CGSV +A+++FD+   K +V+ N M+SGY  RGLA EA NL   +   
Sbjct: 64  YITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQE 123

Query: 275 RVKPN---------------VVTW--------------------NTLISGFSKSGDQVMV 299
           R++P+               V+ W                    N LIS ++K G     
Sbjct: 124 RLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDA 183

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            ++F  M ++    D VSWT++      +   +E+  T+  ML +   P+  T  ++L A
Sbjct: 184 RRVFDAMASR----DEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSA 239

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           C S A + +GK+IH   +      D+ V +AL  MY KCG   +AR +F+ +S R+ + W
Sbjct: 240 CGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAW 299

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N+MI G  + G  +EA   F++M EE    D  ++T VL+AC   G +  G+ + +    
Sbjct: 300 NTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEI-HARAA 358

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           K  ++        ++++  +AG + +A ++   M    D+  W  LLG
Sbjct: 359 KDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKR-DVVSWTTLLG 405



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 155/338 (45%), Gaps = 7/338 (2%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           A Y+  +    R   L  GK +HA+    GL    +    LI  Y++  ++  AR +FD 
Sbjct: 332 ATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 391

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +PK ++  W  L G YA      E+ T F +M  QG+K N      VLKAC +   +  G
Sbjct: 392 MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWG 451

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           ++IH+ V+K     D  V ++L+ MY KCGSVE A +VF+ M  +D+V  N ++ G  Q 
Sbjct: 452 KEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQN 511

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVS 317
           G   EAL   E + +  ++PN  T+  ++S            + F  M +  G+ P    
Sbjct: 512 GRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKH 571

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG-KEIHGCA 376
           +  ++  L       EA D    +L+    P++A   ++L AC    N+  G +    C 
Sbjct: 572 YACMVDILARAGHLREAEDV---ILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCL 628

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
            +      L+V  +L  +YA  G   +   L   M ER
Sbjct: 629 KLEPQNAGLYV--SLSAIYAAAGMWRDVAKLRKFMKER 664



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 127/267 (47%), Gaps = 28/267 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +HA+++ +GL     +   L++ Y +C ++  A  +F+ +   ++  W  L G
Sbjct: 447 ALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIG 506

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              + G   EA+  +  M  +G++ N     +VL AC   + +  G +  + + K     
Sbjct: 507 GLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSK----- 561

Query: 213 DAFVVSS------LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           D  +V +      ++D+ ++ G + +A+ V   +  K   AM   +       LA   ++
Sbjct: 562 DYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGAL-------LAACRIH 614

Query: 267 LVEEIGTP------RVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSW 318
              EIG        +++P N   + +L + ++ +G    V+KL + M+ +GV+ +   SW
Sbjct: 615 CNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSW 674

Query: 319 TSVISGLVHNF-CNDEAFDTFKEMLSQ 344
              I+G VH+F   D++    +E+ ++
Sbjct: 675 IE-IAGEVHSFVARDQSHPRTQEIYAE 700


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/510 (32%), Positives = 283/510 (55%), Gaps = 42/510 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G I+H  +   G+ +   +   L++ Y +   +   R +FD++   +   W  +  
Sbjct: 231 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 290

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++ G ++E++ +F EM +   K ++  I S+L+ACGHL D+  G+ +H  ++   +  
Sbjct: 291 GYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 349

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    + LI+MY+KCG++  +++VF  M  KD V+ N+M++ Y+Q G   EA+ L + + 
Sbjct: 350 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK 409

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
           T  VKP+ VT+                                   NTL+  ++K G+  
Sbjct: 410 TD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMG 468

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K+F+ M+A+    D+++W ++I+  VH+   +        M ++G  P  AT+ SIL
Sbjct: 469 DSLKVFENMKAR----DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSIL 524

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P C+  A  R+GKEIHGC   +G+E D+ V + L++MY+KCG +  +  +F  M  ++ V
Sbjct: 525 PVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVV 584

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TW ++I  C  +G   +A+  F +ME    + DH++F A++ AC H GLVE G   F+ M
Sbjct: 585 TWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRM 644

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           ++ YKI PR EHYAC+VDLL R+  L +A + I +M  +PD  +WGALL AC+  G+ E+
Sbjct: 645 KKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEI 704

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE  ++ + EL P+     +L++++YA  G
Sbjct: 705 AERVSERIIELNPDDTGYYVLVSNIYAALG 734



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 235/496 (47%), Gaps = 52/496 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD-EIPKTNIHRWIALTGAYARRG 158
           LH+ +I  GL      + KLI  Y   ++   +  +F    P  N++ W ++  A    G
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
              EA++++ E     L+ + +  PSV+ AC  L D    + IH  VL   FG+D ++ +
Sbjct: 95  LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL------------- 265
           +LIDMY +   ++KA+KVF+EM  +D+V+ N+++SGY   G   EAL             
Sbjct: 155 ALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVP 214

Query: 266 -------------------------NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
                                     L+E+IG   +K +V+  N L+S + K    +   
Sbjct: 215 DSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG---IKKDVIVNNGLLSMYCKFNGLIDGR 271

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           ++F  M    V  D VSW ++I G       +E+   F EM++Q F P   TI+SIL AC
Sbjct: 272 RIFDKM----VLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQAC 326

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
               ++  GK +H   I  G E D    + L++MYAKCG +  ++ +F  M  +++V+WN
Sbjct: 327 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 386

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           SMI     +G  DEA++LF  M+   K D +++  +L+    +G + LG+ L   +  K 
Sbjct: 387 SMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLA-KM 445

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
                      +VD+  + G + ++ ++ + M    D+  W  ++ +C +    E   + 
Sbjct: 446 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHS---EDCNLG 501

Query: 541 AKHLSELEPESAANNM 556
            + +S +  E    +M
Sbjct: 502 LRMISRMRTEGVTPDM 517



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 243/530 (45%), Gaps = 50/530 (9%)

Query: 57  NGIFIEAHYKMPIISRSFHLSPAAYS--ERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           NG+F EA   +   ++   L P  Y+    I         +  K +H +++  G      
Sbjct: 93  NGLFSEA-LSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLY 151

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I   LI  Y    ++  AR +F+E+P  ++  W +L   Y   GY  EA+ +++     G
Sbjct: 152 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 211

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +  + + + SVL+ACG L  +  G+ IH L+ K     D  V + L+ MY K   +   +
Sbjct: 212 VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGR 271

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------- 283
           ++FD+MV +D V+ N M+ GY Q GL  E++ L  E+   + KP+++T            
Sbjct: 272 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLG 330

Query: 284 ------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                                   N LI+ ++K G+ +   ++F  M+ K    D VSW 
Sbjct: 331 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK----DSVSWN 386

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           S+I+  + N   DEA   FK M+     P S T   +L       ++  GKE+H     M
Sbjct: 387 SMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM 445

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           G   ++ V + LVDMYAKCG + ++  +F+ M  R+ +TWN++I  C +   C+  + + 
Sbjct: 446 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 505

Query: 440 NQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           ++M  E    D  +  ++L  C  +     G+ +   +  K  +         ++++  +
Sbjct: 506 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF-KLGLESDVPVGNVLIEMYSK 564

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
            G L  ++++ K M T+ D+  W AL+ AC  +G     + A +   E+E
Sbjct: 565 CGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE---GKKAVRAFGEME 610



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 199/442 (45%), Gaps = 63/442 (14%)

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
           + + V HE      +Q +F   S+ +A    +      K+HSL++           + LI
Sbjct: 2   KTLRVLHECS----RQTLF--SSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLI 55

Query: 222 DMYSKCGSVEKAKKVFDEMVEKDIVAM-NAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
             Y+       +  VF      + V + N+++      GL +EAL+L  E    R++P+ 
Sbjct: 56  AKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDT 115

Query: 281 VTW-----------------------------------NTLISGFSKSGDQVMVSKLFQL 305
            T+                                   N LI  + +  D     K+F+ 
Sbjct: 116 YTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEE 175

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  +    DVVSW S+ISG   N   +EA + +    + G  P S T+SS+L AC    +
Sbjct: 176 MPLR----DVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGS 231

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G  IHG    +G++ D+ V + L+ MY K   + + R +FDKM  R+ V+WN+MI G
Sbjct: 232 VEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICG 291

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
            +  G  +E+I+LF +M  + K D L+ T++L AC H+G +E G+ + + M         
Sbjct: 292 YSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMI-------- 343

Query: 486 TEHYAC-------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           T  Y C       ++++  + G L  + E+   M  + D   W +++     +G+ + A 
Sbjct: 344 TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAM 402

Query: 539 IAAKHL-SELEPESAANNMLLT 559
              K + ++++P+S    MLL+
Sbjct: 403 KLFKMMKTDVKPDSVTYVMLLS 424



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 162/403 (40%), Gaps = 23/403 (5%)

Query: 57  NGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA 116
           NG F EA     ++          Y   + +  +   L  GK LH  L   G      ++
Sbjct: 395 NGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVS 454

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
             L+  Y +C  +  +  +F+ +   +I  W  +  +          + +   M  +G+ 
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 514

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            ++  + S+L  C  L+    G++IH  + K    +D  V + LI+MYSKCGS+  + +V
Sbjct: 515 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 574

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F  M  KD+V   A++S     G   +A+    E+    + P+ V +  +I   S SG  
Sbjct: 575 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLV 634

Query: 297 VMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                 F  M+    +EP +  +  V+  L  +   D+A D    +LS    P S+   +
Sbjct: 635 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDF---ILSMPLKPDSSIWGA 691

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L AC  + +    + +    I +  + D      + ++YA  G   + R++   +  R 
Sbjct: 692 LLSACRMSGDTEIAERVSERIIELNPD-DTGYYVLVSNIYAALGKWDQVRSIRKSIKARG 750

Query: 416 T-----VTWNSM-----IFGCANHGYCDEAIELFNQMEERKKL 448
                  +W  +     +FG           + F Q EE  KL
Sbjct: 751 LKKDPGCSWMEIQNKVYVFGTGT--------KFFEQFEEVNKL 785


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 276/502 (54%), Gaps = 35/502 (6%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA+L+V GL     + TKLI   +   +I  AR +FD++P+  I  W A+   Y+R 
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
            + Q+A+ ++  M +  +  + F  P +LKAC  LS +  G  +H+ V +  F  D FV 
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 218 SSLIDMYSKCGSVEKAKKVFD--EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + LI +Y+KC  +  A+ VF+   + E+ IV+  A+VS Y Q G   EAL +   +    
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD 217

Query: 276 VKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRAK 309
           VKP+ V   ++++ F+     K G  +                     M +K  Q+  AK
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 310 GV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +      P+++ W ++ISG   N    EA D F EM+++   P + +I+S + ACA   
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           ++ + + ++          D+ + SAL+DM+AKCG +  AR +FD+  +R+ V W++MI 
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIV 397

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G   HG   EAI L+  ME      + ++F  +L AC H G+V  G   FN+M + +KI 
Sbjct: 398 GYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKIN 456

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P+ +HYAC++DLLGRAG L +AYE+IK M  +P + VWGALL ACK H ++EL E AA+ 
Sbjct: 457 PQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQ 516

Query: 544 LSELEPESAANNMLLTDLYANA 565
           L  ++P +  + + L++LYA A
Sbjct: 517 LFSIDPSNTGHYVQLSNLYAAA 538



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 169/374 (45%), Gaps = 34/374 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--EIPKTNIHRWIALT 151
           LQ G+ +HAQ+   G      +   LI  Y +C+ +  AR +F+   +P+  I  W A+ 
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYA+ G   EA+ +F  M    +K +   + SVL A   L D+  G  IH+ V+K    
Sbjct: 195 SAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  ++ SL  MY+KCG V  AK +FD+M   +++  NAM+SGY + G A EA+++  E+
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 272 GTPRVKPNVVTWNTLISGFSKSG------------------DQVMVSKLFQLMRAK---- 309
               V+P+ ++  + IS  ++ G                  D V +S     M AK    
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374

Query: 310 ---------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                     ++ DVV W+++I G   +    EA   ++ M   G  P   T   +L AC
Sbjct: 375 EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT-W 419
             +  +R G           +       + ++D+  + G + +A  +   M  +  VT W
Sbjct: 435 NHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

Query: 420 NSMIFGCANHGYCD 433
            +++  C  H + +
Sbjct: 495 GALLSACKKHRHVE 508



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 141/277 (50%), Gaps = 3/277 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +HA ++  GL     +   L T Y +C  +  A++LFD++   N+  W A+   
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ GY +EA+ +FHEM  + ++ +   I S + AC  +  +     ++  V +  +  D
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDD 357

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F+ S+LIDM++KCGSVE A+ VFD  +++D+V  +AM+ GY   G A EA++L   +  
Sbjct: 358 VFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMER 417

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             V PN VT+  L+   + SG        F LM    + P    +  VI  L      D+
Sbjct: 418 GGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQ 477

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           A++  K M  Q   P      ++L AC    ++  G+
Sbjct: 478 AYEVIKCMPVQ---PGVTVWGALLSACKKHRHVELGE 511



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 59/110 (53%), Gaps = 1/110 (0%)

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           SA +  + K+IH   +V+G++    + + L+   +  G I+ AR +FD +       WN+
Sbjct: 30  SATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNA 89

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQ 470
           +I G + + +  +A+ +++ M+  R   D  +F  +L AC  +  +++G+
Sbjct: 90  IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 282/547 (51%), Gaps = 76/547 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYT---ECQNIHHARMLFDEIPKTNIHRWI 148
           + LQS +I+HA++I +GL       +KLI F         + +A  +FD I + N+  W 
Sbjct: 13  KTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWN 72

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            +   +A       A+ ++  M   GL  N +  P +LKAC        G++IH  VLK 
Sbjct: 73  TMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKL 132

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFD------------------------------ 238
               D +V +SLI MY K G  E A+KVFD                              
Sbjct: 133 GCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMF 192

Query: 239 -EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------------------ 279
            E+  KD+V+ NA++SGY + G   EAL L +E+    VKP+                  
Sbjct: 193 DEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIE 252

Query: 280 ----VVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
               V +W             N LI  + K G+    S LF+ +  K    DV+SW ++I
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK----DVISWNTLI 308

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMG 380
            G  H     EA   F+EML  G  P   T+ SILPACA    +  G+ IH      + G
Sbjct: 309 GGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 368

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           V     +R++L+DMYAKCG I  A+ +FD M  R+  +WN+MIFG A HG  + A ++F+
Sbjct: 369 VSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFS 428

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M +   + D ++F  +L+AC H G+++LG+ +F  M E YKI P+ EHY CM+DLLG +
Sbjct: 429 RMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHS 488

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G   EA EMI +M  +PD  +W +LL ACK HGN+EL E  A++L ++EP+++ + +LL+
Sbjct: 489 GLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLS 548

Query: 560 DLYANAG 566
           ++YA AG
Sbjct: 549 NIYATAG 555



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 180/431 (41%), Gaps = 87/431 (20%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T LI  Y     I  A+ +FDEIP  ++  W AL   YA  G ++EA+ +F EM    +K
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK 232

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            +   + +VL AC   + I  G ++HS +  H FG++  +V++LID+Y KCG VE A  +
Sbjct: 233 PDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGL 292

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT-------------- 282
           F+ +  KD+++ N ++ GY    L  EAL L +E+      PN VT              
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAI 352

Query: 283 ----W-------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
               W                    +LI  ++K GD     ++F  M  + +     SW 
Sbjct: 353 DIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLS----SWN 408

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++I G   +   + AFD F  M   G  P   T   +L AC+ +                
Sbjct: 409 AMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS---------------- 452

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC-----ANHGYCDE 434
                              G +   R +F  M+E   +T     +GC      + G   E
Sbjct: 453 -------------------GMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKE 493

Query: 435 AIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACMV 493
           A E+ N ME     D + + ++L AC   G VELG+   +  Q   KI P+    Y  + 
Sbjct: 494 AEEMINSMEMDP--DGVIWCSLLKACKMHGNVELGE---SFAQNLIKIEPKNSGSYVLLS 548

Query: 494 DLLGRAGRLAE 504
           ++   AGR  E
Sbjct: 549 NIYATAGRWNE 559


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 278/473 (58%), Gaps = 12/473 (2%)

Query: 100 LHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           LH++++++   R+   +A KL+  Y+       AR +FD   + N+  +  +  +Y    
Sbjct: 57  LHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNN 116

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            + EA+++F  M       + +  P VLKAC  L ++  G ++H  ++K    T+ F+ +
Sbjct: 117 LYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGN 176

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +L+ MY KCG + +A+KV D+M  +D+V+ N+MV+GY Q G   +AL + +E+ +  +  
Sbjct: 177 ALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNH 236

Query: 279 NVVTWNTL--ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           +  T  +L  +  ++   +   +  +F+ M  K    +++SW  +I+  V+N   +EA  
Sbjct: 237 DAGTMASLSPVVCYTSLENVQYIHNMFERMTKK----NLISWNVMIAIYVNNSMPNEAVS 292

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M   G  P + TI+S+LPAC   + +  G+ +H       ++ +L + +AL+DMYA
Sbjct: 293 LFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYA 352

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAIELFNQM-EERKKLDHLSF 453
           KCG + EAR +FDKM  R+ V+W SM+  +G +  GY  +A+ LF +M +  +  D ++F
Sbjct: 353 KCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGY--DAVALFAKMLDSGQNPDSIAF 410

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
            +VL+AC H GL++ G+  F MM E+Y I+PR EH+ACMVDL GRAG + EAY  IK M 
Sbjct: 411 VSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMP 470

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            EP+  VWGALL AC+ H  +++  +AA  L +L P+ +   +LL+++YA AG
Sbjct: 471 MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAG 523



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ LH  +    L     +   L+  Y +C  +  AR +FD++   ++  W ++  
Sbjct: 321 ALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMS 380

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY R G   +AV +F +M   G   +     SVL AC H   +  G     + +   +G 
Sbjct: 381 AYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRM-MTEQYGI 439

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
              +   + ++D++ + G VE+A     +M
Sbjct: 440 VPRIEHFACMVDLFGRAGEVEEAYSFIKQM 469


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 283/564 (50%), Gaps = 73/564 (12%)

Query: 76  LSP-----AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           LSP     AAY   ++     R L+ GK LHA+LI+  +     +A+KLI FY++  + H
Sbjct: 27  LSPPGVDFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAH 86

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ---GLKQNIFVIPSVLK 187
            AR +FD  P  N   W A+   Y+     + A+ +F             + F I  VLK
Sbjct: 87  FARKVFDTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLK 146

Query: 188 A-CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
           A           +++H L+L+    +D FV+++LI  Y +C  V  A+ VFD M E+DIV
Sbjct: 147 ALASSFCSPELAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIV 206

Query: 247 AMNAMVSGYVQRGLATEALNL-VEEIGTPRVKPNVVTW---------------------- 283
             NAM+ GY QR L  E   L +E +    V PNVVT                       
Sbjct: 207 TWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRF 266

Query: 284 -------------NTLISGFSKSGDQVMVSKLFQLMRAK--------------------- 309
                        N +++ ++K G      ++F+ MR K                     
Sbjct: 267 VKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDA 326

Query: 310 -----GVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                GVE P +  W +VISG+V N   +  FD  ++M   G  P + T++SILP+ +  
Sbjct: 327 MGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYF 386

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           +N+R GKE+HG AI  G E +++V ++++D Y K G I  AR +FD    R+ + W S+I
Sbjct: 387 SNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSII 446

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              A HG    A+ L+ QM ++  + D ++ T+VLTAC H GLV+    +FN M  KY I
Sbjct: 447 SAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGI 506

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P  EHYACMV +L RAG+L+EA + I  M  EP   VWG LL      G++E+ + A  
Sbjct: 507 QPLVEHYACMVGVLSRAGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDVEIGKFACD 566

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
           HL E+EPE+  N +++ +LYA+AG
Sbjct: 567 HLFEIEPENTGNYIIMANLYAHAG 590


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 183/526 (34%), Positives = 272/526 (51%), Gaps = 35/526 (6%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARM 134
           LSP + +  +E  +  +  + G+  HAQ+I +    L   I   L+  Y++    + A++
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           L    P  ++  W AL     + G    A+  F  M    ++ N F  P   KA G L  
Sbjct: 64  LLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
              G+++H+L +K    +D FV  S  DMYSK G  E+A+K+FDEM E++I   NA +S 
Sbjct: 124 PLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSN 183

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
            V  G   +AL    E      +PN++T+   ++  + +    +  +L   +   G E D
Sbjct: 184 SVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEAD 243

Query: 315 V-------------------------------VSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           V                               VSW S+I   V N   ++A   F     
Sbjct: 244 VSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARK 303

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
           +G  PT   +SS+L ACA  + +  GK +H  A+   V G++ V SALVDMY KCG I +
Sbjct: 304 EGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIED 363

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM---EERKKLDHLSFTAVLTAC 460
           A   FD+M ERN VTWN+MI G A+ G  D A+ LF++M     R   ++++F  VL+AC
Sbjct: 364 AERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSAC 423

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
              G V +G  +F  M+ +Y I P  EHYAC+VDLLGRAG + +AY+ IK M   P + V
Sbjct: 424 SRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSV 483

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           WGALLGA K  G  EL ++AA +L EL+P  + N++LL++++A AG
Sbjct: 484 WGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAG 529


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/500 (35%), Positives = 285/500 (57%), Gaps = 37/500 (7%)

Query: 87  IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTN 143
           ++ R R+L+  K +HA +++ G         +LI F +         HAR++FD IP  +
Sbjct: 14  LWRRCRSLRQIKQVHALMVLRGFLSDPSALRELI-FASSVGVRGGTAHARLVFDRIPHPD 72

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQ------GLKQNIFVIPSVLKACGHLSDIGT 197
              +  L    A     ++AV+++  M         G++ +    P VL+AC  +    T
Sbjct: 73  RFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASET 132

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G ++H+ V+K    +DAFV ++LI M++ CG +  A  +FD    +D VA +AM+SG+ +
Sbjct: 133 GAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFAR 192

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
           RG    A  L +E  +P VK ++V+WN +I+ ++K GD     +LF        + DVVS
Sbjct: 193 RGDIGAARELFDE--SP-VK-DLVSWNVMITAYAKLGDMAPARELFD----GAPDRDVVS 244

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH---- 373
           W ++ISG V    + +A + F++M + G  P + T+ S+L ACA + +M  G+ +H    
Sbjct: 245 WNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLS 304

Query: 374 ------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
                 G + V+G        +AL+DMYAKCG ++ A  +F  M ++N  TWNS+I G A
Sbjct: 305 GRFSRIGPSTVLG--------NALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLA 356

Query: 428 NHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG+  EAI++F +M +   K D ++F AVL AC H G+V+ G   FN+MQ++Y I P  
Sbjct: 357 LHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNV 416

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           +HY CMVD+L RAG L EA+E I TM  EP+  +W  LLGAC+ HG +ELAE A + L +
Sbjct: 417 KHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLK 476

Query: 547 LEPESAANNMLLTDLYANAG 566
              +++ + +LL+++YA+ G
Sbjct: 477 ARSDASGDFVLLSNIYASVG 496


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/510 (32%), Positives = 279/510 (54%), Gaps = 42/510 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+ LH   +  G+     + + L + Y++C     A +LF E+ + ++  W  L GA
Sbjct: 237 LSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGA 296

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y RRG  +EAV +F EM   GL+ +  ++  VL   G  +++  G+  H+++++ +FG  
Sbjct: 297 YCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDS 356

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--- 270
             + +SLI MY K   V+ A  VF  + ++D  + + MV+GY + GL  + L L  +   
Sbjct: 357 VLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQC 416

Query: 271 ----------------------IGTPRVKPNVVTW------------NTLISGFSKSGDQ 296
                                 +G  R+  +V  +            N+LI  + + G+ 
Sbjct: 417 RDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDENSITNSLIGMYGRCGNF 476

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
            +  K+F + +   +  DVV+W ++IS   H   +++A   + +ML++   P S+T+ ++
Sbjct: 477 ELACKIFAVAK---LRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITV 533

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           + ACA+ A +  G+ +H     MG+E D+ + +ALVDMY KCG +  AR +FD M +R+ 
Sbjct: 534 ISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDV 593

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           VTWN MI G   HG  ++A++LF++ME    K + L+F A+L+ACCH GLV+ G++LF  
Sbjct: 594 VTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIR 653

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M   Y++ P  +HYACMVDLLG++G L EA +++  M  +PD  VWG LL ACK H N E
Sbjct: 654 MG-GYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKVHDNFE 712

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANA 565
           +    AK     +P +    +L+++ Y +A
Sbjct: 713 MGLRVAKKAFSSDPRNDGYYILMSNSYGSA 742



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 225/484 (46%), Gaps = 48/484 (9%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM---- 170
           +++ L+  Y  C ++  A  LFDE+ + ++  W A+     R G   + +    +M    
Sbjct: 153 VSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLA 212

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
              G + N   + S L+ACG L ++  G  +H   +K      A VVS+L  MYSKC   
Sbjct: 213 GDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMT 272

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           E A  +F E+ EKD+V+   ++  Y +RGLA EA+ L +E+    ++P+ V  + ++SG 
Sbjct: 273 EDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGL 332

Query: 291 SKS------------------GDQVMVSK-------LFQLMRAKGV------EPDVVSWT 319
             S                  GD V+++         F+L+   G       + D  SW+
Sbjct: 333 GSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWS 392

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQG----FCPTSATISSILPACASAANMRRGKEIHGC 375
            +++G      + +  + +++M  +      C  ++ +S+I  +C+    +R G+ +H C
Sbjct: 393 LMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAI-SSCSRLGRLRLGQSVH-C 450

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDE 434
             +  +  +  + ++L+ MY +CG    A  +F      R+ VTWN++I   ++ G  ++
Sbjct: 451 YSIKCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSND 510

Query: 435 AIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A+ L+ QM  E  K +  +   V++AC ++  +E G+ L + ++    +         +V
Sbjct: 511 ALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVK-NMGLESDVSISTALV 569

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           D+  + G+L  A  +  +M  + D+  W  ++     HG    A  A K  SE+E  S  
Sbjct: 570 DMYTKCGQLGTARGIFDSM-LQRDVVTWNVMISGYGMHGE---ANQALKLFSEMEAGSIK 625

Query: 554 NNML 557
            N L
Sbjct: 626 PNSL 629



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 213/500 (42%), Gaps = 52/500 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LHA    SGL+     A KL++ Y+       A + F   P  +   W +L  ++     
Sbjct: 34  LHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASD 93

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF--GTDAFVV 217
              A++    M   G + + F  P    A   L+ +  G  +HS  +K     G  +  V
Sbjct: 94  FDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAV 153

Query: 218 -SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVEEIG 272
            SSL+ MY++CGS+  A K+FDEMVE+D+VA  A+VSG V+ G   + +     ++   G
Sbjct: 154 SSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAG 213

Query: 273 TPRVKPNVVTWNTLISGFSKSGD-------------------QVMVSKLFQL-------- 305
               +PN  T  + +      G+                    ++VS LF +        
Sbjct: 214 DSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTE 273

Query: 306 ----MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
               +  +  E DVVSWT +I          EA + F+EM   G  P    +S +L    
Sbjct: 274 DACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLG 333

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S+AN+ RGK  H   I       + + ++L+ MY K   +  A T+F  + +R+  +W+ 
Sbjct: 334 SSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSL 393

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDHL----SFTAVLTACCHVGLVELGQRLFNMMQ 477
           M+ G    G   + +EL+ QM+ R   + L    S  + +++C  +G + LGQ +     
Sbjct: 394 MVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSV----- 448

Query: 478 EKYKI---MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG-- 532
             Y I   +        ++ + GR G    A ++        D+  W AL+ +  + G  
Sbjct: 449 HCYSIKCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRS 508

Query: 533 NIELAEIAAKHLSELEPESA 552
           N  L+        +++P S+
Sbjct: 509 NDALSLYGQMLTEDVKPNSS 528



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 42/200 (21%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G++LH+ +   GL     I+T L+  YT+C  +  AR +FD + + ++  W  +  
Sbjct: 542 ALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMIS 601

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G   +A+ +F EM    +K N     ++L AC H                     
Sbjct: 602 GYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCH--------------------- 640

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNLV 268
                          G V++ +K+F  M    +E ++     MV    + GL  EA +LV
Sbjct: 641 --------------AGLVDEGRKLFIRMGGYRLEPNLKHYACMVDLLGKSGLLQEAEDLV 686

Query: 269 EEIGTPRVKPNVVTWNTLIS 288
             +  P +KP+   W TL+S
Sbjct: 687 --LAMP-IKPDGGVWGTLLS 703


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 276/502 (54%), Gaps = 35/502 (6%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA+L+V GL     + TKLI   +   +I  AR +FD++P+  I  W A+   Y+R 
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
            + Q+A+ ++  M +  +  + F  P +LKAC  LS +  G  +H+ V +  F  D FV 
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 218 SSLIDMYSKCGSVEKAKKVFD--EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + LI +Y+KC  +  A+ VF+   + E+ IV+  A+VS Y Q G   EAL +  ++    
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 276 VKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRAK 309
           VKP+ V   ++++ F+     K G  +                     M +K  Q+  AK
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 310 GV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +      P+++ W ++ISG   N    EA D F EM+++   P + +I+S + ACA   
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           ++ + + ++          D+ + SAL+DM+AKCG +  AR +FD+  +R+ V W++MI 
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIV 397

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G   HG   EAI L+  ME      + ++F  +L AC H G+V  G   FN M + +KI 
Sbjct: 398 GYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKIN 456

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P+ +HYAC++DLLGRAG L +AYE+IK M  +P + VWGALL ACK H ++EL E AA+ 
Sbjct: 457 PQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQ 516

Query: 544 LSELEPESAANNMLLTDLYANA 565
           L  ++P +  + + L++LYA A
Sbjct: 517 LFSIDPSNTGHYVQLSNLYAAA 538



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 170/374 (45%), Gaps = 34/374 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--EIPKTNIHRWIALT 151
           LQ G+ +HAQ+   G      +   LI  Y +C+ +  AR +F+   +P+  I  W A+ 
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYA+ G   EA+ +F +M    +K +   + SVL A   L D+  G  IH+ V+K    
Sbjct: 195 SAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  ++ SL  MY+KCG V  AK +FD+M   +++  NAM+SGY + G A EA+++  E+
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 272 GTPRVKPNVVTWNTLISGFSKSG------------------DQVMVSKLFQLMRAK---- 309
               V+P+ ++  + IS  ++ G                  D V +S     M AK    
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374

Query: 310 ---------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                     ++ DVV W+++I G   +    EA   ++ M   G  P   T   +L AC
Sbjct: 375 EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT-W 419
             +  +R G           +       + ++D+  + G + +A  +   M  +  VT W
Sbjct: 435 NHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

Query: 420 NSMIFGCANHGYCD 433
            +++  C  H + +
Sbjct: 495 GALLSACKKHRHVE 508



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 140/277 (50%), Gaps = 3/277 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +HA ++  GL     +   L T Y +C  +  A++LFD++   N+  W A+   
Sbjct: 238 LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ GY +EA+ +FHEM  + ++ +   I S + AC  +  +     ++  V +  +  D
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDD 357

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F+ S+LIDM++KCGSVE A+ VFD  +++D+V  +AM+ GY   G A EA++L   +  
Sbjct: 358 VFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMER 417

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             V PN VT+  L+   + SG        F  M    + P    +  VI  L      D+
Sbjct: 418 GGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQ 477

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           A++  K M  Q   P      ++L AC    ++  G+
Sbjct: 478 AYEVIKCMPVQ---PGVTVWGALLSACKKHRHVELGE 511



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 59/110 (53%), Gaps = 1/110 (0%)

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           SA +  + K+IH   +V+G++    + + L+   +  G I+ AR +FD +       WN+
Sbjct: 30  SATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNA 89

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQ 470
           +I G + + +  +A+ +++ M+  R   D  +F  +L AC  +  +++G+
Sbjct: 90  IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 261/475 (54%), Gaps = 45/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA ++   L++ + + TK++          +A +LF  +   N   + A+  AY   
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90

Query: 158 GYHQEAVTVFHEM--HIQG---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             +  A+TV+ +M  H  G   +  + F  P V+K+C  L     G+++H  V K    +
Sbjct: 91  KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V +SL++MY KC S++ A KVF+EM E+D                            
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHKVFEEMTERD---------------------------- 182

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                   V+WNTLISG  + G       +F+ M+ K     + SWT+++SG     C  
Sbjct: 183 -------AVSWNTLISGHVRLGQMRRARAIFEEMQDK----TIFSWTAIVSGYARIGCYA 231

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +A + F+ M   G  P   ++ S+LPACA    +  GK IH  A   G   ++ V +AL+
Sbjct: 232 DALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALI 291

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           +MYAKCG I E R LFD+M+ER+ ++W++MI G ANHG   EAIELF +M++ K + + +
Sbjct: 292 EMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNII 351

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  +L+AC H GL+  G R F  M+  Y I P  EHY C+V+LLG +GRL +A E+IK 
Sbjct: 352 TFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKK 411

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  +PD  +WG+LL +C++H N+E+A IA +HL ELEP    N +LL++LYA+ G
Sbjct: 412 MPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLG 466



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 148/302 (49%), Gaps = 35/302 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNI--------------------------- 129
           GK +H  +   G    T +   L+  Y +C ++                           
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVR 195

Query: 130 ----HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
                 AR +F+E+    I  W A+   YAR G + +A+  F  M + G++ +   + SV
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L AC  L  +  G+ IH    K  F  +  V ++LI+MY+KCGS+++ +++FD+M E+D+
Sbjct: 256 LPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDV 315

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           ++ + M+ G    G A EA+ L +E+   +++PN++T+  L+S  + +G      + F+ 
Sbjct: 316 ISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFES 375

Query: 306 M-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           M R   +EP V  +  +++ L  +   D+A +  K+M  +   P SA   S+L +C S +
Sbjct: 376 MKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMK---PDSAIWGSLLSSCRSHS 432

Query: 365 NM 366
           N+
Sbjct: 433 NL 434



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 112/256 (43%), Gaps = 11/256 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H     +G  R   +   LI  Y +C +I   R LFD++ + ++  W  +  
Sbjct: 264 ALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIV 323

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G   EA+ +F EM    ++ NI     +L AC H   +  G +     +K  +  
Sbjct: 324 GLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFE-SMKRDYNI 382

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS---GYVQRGLATEALN 266
           +  V     L+++    G +++A ++  +M ++ D     +++S    +    +A  A+ 
Sbjct: 383 EPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAME 442

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
            + E+  P    N V  + L +   K      VS++ +LMR+K ++      +  +  +V
Sbjct: 443 HLLEL-EPADTGNYVLLSNLYADLGKWDG---VSRMRKLMRSKSMKKTPGCSSIEVDNMV 498

Query: 327 HNFCNDEAFDTFKEML 342
             F + +    F + +
Sbjct: 499 QEFASGDDSKPFSKAI 514


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/502 (36%), Positives = 271/502 (53%), Gaps = 37/502 (7%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HAQLI   L +   IA KLI  Y+   N+  A  +F+++P  N+H +  L  AY+  
Sbjct: 39  KQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLS 98

Query: 158 GYHQEAVTVFH---EMHIQGLKQNIFVIPSVLKAC-GHLSDIGTGEKIHSLVLKHSFGTD 213
           G    ++  F    +MH+ G+  + F  P +LK C G  S +   + +H+ V K  F  D
Sbjct: 99  GNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWD 158

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV +SLID Y +CG VE A KVF  M E+D+V+ N+MV G V+ G    AL + +E+  
Sbjct: 159 IFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPE 218

Query: 274 -PRVKPN--------------------------VVTWNTLISGFSKSGDQVMVSKLFQLM 306
             RV  N                          +V+W+T++ G+SK+GD  M   LF   
Sbjct: 219 RDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRC 278

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
             K    ++V WT++ISG        EA +   EM   G         SIL ACA +  +
Sbjct: 279 PVK----NLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGML 334

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSMIFG 425
             GK++H   +         V ++ +DMYAKCG + +A  +F+ M +E++ V+WNSMI G
Sbjct: 335 GLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHG 394

Query: 426 CANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              HG+ +++IELFN M  E  K D  +F  +L AC H GLV  G+  F  MQ  Y I+P
Sbjct: 395 FGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVP 454

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           + EHY CMVDLLGR G L EA+ ++++M  EP+  + G LLGAC+ H +++LA   +K+L
Sbjct: 455 QIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYL 514

Query: 545 SELEPESAANNMLLTDLYANAG 566
            +L P    N  LL+++YA +G
Sbjct: 515 FKLVPSDPGNFSLLSNIYAQSG 536


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 281/547 (51%), Gaps = 76/547 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN---IHHARMLFDEIPKTNIHRWI 148
           + LQS +I+HAQ+I +GL       ++L+ F     N   + +A  +F+ I + N+  W 
Sbjct: 13  KTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWN 72

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            +   +A       A+ ++  M   GL  N +  P +LK+C  L     G++IH  VLK 
Sbjct: 73  TMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKL 132

Query: 209 SFGTDAFVVSSLIDMYSKCGS-------------------------------VEKAKKVF 237
            +  D +V +SLI MY K G                                +E A+K+F
Sbjct: 133 GYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMF 192

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------------------ 279
           DE+  KD+V+ NA++SGY   G   EAL+L +E+    VKP+                  
Sbjct: 193 DEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQ 252

Query: 280 ----VVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
               V +W             N LI  +SK G+      LFQ +  K    DV+SW ++I
Sbjct: 253 LGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK----DVISWNTMI 308

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMG 380
            G  H     EA   F+EML  G  P   T+ SILPACA    +  G+ IH      + G
Sbjct: 309 GGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKG 368

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           V     +R++L+DMYAKCG I  A  +F+ M  R     N+MIFG A HG  + A ++F+
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFS 428

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M +   + D ++F  +L+AC H G+++LG+R+F  M + YKI P+ EHY CM+DLLG  
Sbjct: 429 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHL 488

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G   EA EMI TM+ EPD  +W +LL ACK HGN+EL E  A+ L ++EPE+  + +LL+
Sbjct: 489 GLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLS 548

Query: 560 DLYANAG 566
           ++YA AG
Sbjct: 549 NIYATAG 555



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 175/402 (43%), Gaps = 49/402 (12%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQ 127
           ++   + L    ++  I +Y+++     G+   A  +  G +    ++ T LIT Y    
Sbjct: 129 VLKLGYELDLYVHTSLISMYVKN-----GRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
            I  A+ +FDEIP  ++  W A+   YA  G ++EA+ +F EM    +K +   + +V+ 
Sbjct: 184 YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVS 243

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC     I  G ++HS +  H  G++  +V++LID+YSKCG VE A  +F  +  KD+++
Sbjct: 244 ACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVIS 303

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT------------------W------ 283
            N M+ GY    L  EAL L +E+      PN VT                  W      
Sbjct: 304 WNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYID 363

Query: 284 -------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                         +LI  ++K GD     ++F  M  + +     +  ++I G   +  
Sbjct: 364 KRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLS----ACNAMIFGFAMHGR 419

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI-HGCAIVMGVEGDLHVRS 389
            + AFD F  M   G  P   T   +L AC+ +  +  G+ I         +   L    
Sbjct: 420 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYG 479

Query: 390 ALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
            ++D+    G   EA  + + M+ E + V W S++  C  HG
Sbjct: 480 CMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHG 521


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/511 (33%), Positives = 274/511 (53%), Gaps = 43/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H      G      +A  LI  Y+       AR LFD++P  ++  W A+   
Sbjct: 231 LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 290

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             + G   +A+ V  EM ++G+K N   + S+L  C  L DI T   IH  V+KH    D
Sbjct: 291 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFD 350

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++LI+MY+K G++E A+K F +M   D+V+ N++++ Y Q      A     ++  
Sbjct: 351 LFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL 410

Query: 274 PRVKPNVVT----------------------------W--------NTLISGFSKSGDQV 297
              +P+++T                            W        N ++  ++K G   
Sbjct: 411 NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSI 356
              K+F+++  K    DV+SW ++I+G   N    EA + +K M   +   P   T  SI
Sbjct: 471 SAHKVFEIIPVK----DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSI 526

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPA A    +++G +IHG  I   +  D+ V + L+D+Y KCG + +A +LF ++ + ++
Sbjct: 527 LPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS 586

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           VTWN++I     HG+ ++ ++LF +M +E  K DH++F ++L+AC H G VE G+  F +
Sbjct: 587 VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRL 646

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQE Y I P  +HY CMVDLLGRAG L  AY+ IK M  +PD  +WGALLGAC+ HGNIE
Sbjct: 647 MQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIE 705

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L + A+  L E++ ++    +LL+++YAN G
Sbjct: 706 LGKFASDRLFEVDSKNVGYYVLLSNIYANVG 736



 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 243/482 (50%), Gaps = 58/482 (12%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA L+V+G  +   I+T+L+  Y    ++  +R  FD+IP+ +++ W ++  AY   
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 195

Query: 158 GYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           G+  EA+  F++ + +  ++ + +  P VLKACG L D   G KIH    K  F  + FV
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFV 252

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MYS+ G    A+ +FD+M  +D+ + NAM+SG +Q G A +AL++++E+    +
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
           K N VT                                    N LI+ ++K G+     K
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            FQ M       DVVSW S+I+    N     A   F +M   GF P   T+ S+    A
Sbjct: 373 AFQQMFIT----DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 362 SAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            + + +  + +HG  +  G +  D+ + +A+VDMYAK G +  A  +F+ +  ++ ++WN
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWN 488

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           ++I G A +G   EAIE++  MEE K++  +  ++ ++L A  HVG ++ G ++      
Sbjct: 489 TLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHG---- 544

Query: 479 KYKIMPRTEHY-----ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             +++    H       C++D+ G+ GRL +A  +   +  E  +  W A++     HG+
Sbjct: 545 --RVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV-TWNAIISCHGIHGH 601

Query: 534 IE 535
            E
Sbjct: 602 AE 603



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 15/236 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  +H ++I + L     +AT LI  Y +C  +  A  LF ++P+ +   W A+  
Sbjct: 535 ALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 594

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   G+ ++ + +F EM  +G+K +     S+L AC H   +  G+    L+ ++    
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKP 654

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM-----VSGYVQRG-LATEAL 265
                  ++D+  + G +E A     +M ++ D     A+     + G ++ G  A++ L
Sbjct: 655 SLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRL 714

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
             V+         NV  +  L + ++  G    V K+  L R +G++     W+++
Sbjct: 715 FEVDS-------KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK-KTPGWSTI 762


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 185/536 (34%), Positives = 281/536 (52%), Gaps = 67/536 (12%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K LHA ++ +GL      ATKL T    +   ++ +A  +FD+IP+ N++ W  L  A+A
Sbjct: 47  KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFA 106

Query: 156 RRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
                 + + VF +M H      N +  P V+KA   +S +  G+ IH +V+K SFG+D 
Sbjct: 107 SSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDL 166

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           F+ +SLI  YS  G ++ A  VF ++VEKDIV+ N+M+SG+VQ G   EAL L + +   
Sbjct: 167 FISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKME 226

Query: 275 RVKPNVVT------------------W-----------------NTLISGFSKSGDQVMV 299
             +PN VT                  W                 N ++  + K G     
Sbjct: 227 NARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDA 286

Query: 300 SKLFQLMRAKGV---------------------------EPDVVSWTSVISGLVHNFCND 332
            +LF  M  K +                             D+ +W ++IS    N    
Sbjct: 287 RRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPK 346

Query: 333 EAFDTFKEM-LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           EA   F+E+ L++   P   T++S L ACA    M  G  IH      G++ + H+ ++L
Sbjct: 347 EALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSL 406

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           +DMY+KCG + +A  +F  +  R+   W++MI G A HG+   AI+LF++M+E K K + 
Sbjct: 407 IDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNA 466

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT +L AC H GLV+ G+  FN M+  Y ++P ++HYACMVD+LGRAG L EA E+I+
Sbjct: 467 VTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIE 526

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M   P   VWGALLGAC+ +GN+ELAE+A   L E +  +    +LL+++YA AG
Sbjct: 527 KMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAG 582



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 112/247 (45%), Gaps = 19/247 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G  +H  +   G+     I T LI  Y++C ++  A  +F  + + ++  W A+  
Sbjct: 380 AMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIA 439

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G+ + A+ +F +M    +K N     ++L AC H   +  G ++    ++  +G 
Sbjct: 440 GLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEG-RLFFNQMRPVYGV 498

Query: 213 --DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG--------YVQRGLAT 262
              +   + ++D+  + G +E+A     E++EK  +  +A V G        Y    LA 
Sbjct: 499 VPGSKHYACMVDILGRAGCLEEAV----ELIEKMPIVPSASVWGALLGACRIYGNVELAE 554

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
            A + + E  +      V+  N     ++K+G    VS+L Q M+  G+E +    +  +
Sbjct: 555 MACSRLLETDSNNHGAYVLLSNI----YAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEV 610

Query: 323 SGLVHNF 329
           +G++H F
Sbjct: 611 NGIIHEF 617


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 282/504 (55%), Gaps = 44/504 (8%)

Query: 100 LHAQLIVSGL--ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           +HA ++ +GL       IA +LI  Y    NI  AR +F+++P+ +I+ W ++  AY+R 
Sbjct: 4   IHALILTTGLFFNDANSIA-QLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRT 62

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
            Y  E + +++ M  +G+K +       LKAC  L D+  GE I +  +   +G D FVV
Sbjct: 63  NYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVV 122

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           SS++++Y+K G ++KAK VFD+MV++D+V+   M++G+ Q G   +A+++   +   R +
Sbjct: 123 SSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTE 182

Query: 278 PNVVTW-----------------------------------NTLISGFSKSGDQVMVSKL 302
            + V                                      +LI  ++K+G   + S++
Sbjct: 183 GDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRV 242

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ +  K     V+SW ++ISG   N   ++   +  EM + GF P   ++ S L ACA 
Sbjct: 243 FEGIPYKS----VISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQ 298

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             N++ GK +HG  IV  +  D    +AL+DMYAKCG ++ AR LFD++  R+ + WN+M
Sbjct: 299 VGNLKVGKSLHG-HIVKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAM 357

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I     HG   EA+ LF +M+E     DH +F ++L+AC H GLVE GQ  F+++ +K K
Sbjct: 358 ISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSK 417

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  +HYACMVDLL RAG++ EAY++I++M  +P L +W ALL  C NH N+ + E+ A
Sbjct: 418 IQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVA 477

Query: 542 KHLSELEPESAANNMLLTDLYANA 565
           K + E  P+     +L+++ ++ A
Sbjct: 478 KKILESNPDDLGIYVLVSNFFSMA 501



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 170/368 (46%), Gaps = 32/368 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+I+  Q +  G      + + ++  Y +   +  A+++FD++ K ++  W  +   
Sbjct: 100 LDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITG 159

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A+ G   +A+ ++  M  +  + +  V+  +++AC  L D   G  +H  +++     D
Sbjct: 160 FAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMD 219

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + +SLIDMY+K G +E A +VF+ +  K +++  A++SG+ Q G A + L  + E+  
Sbjct: 220 NVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQN 279

Query: 274 PRVKPNVVTWNTLISGFSKSG------------------DQVMVSKLFQLMRAKG----- 310
              KP++V+  + +S  ++ G                  D+V  + L  +    G     
Sbjct: 280 SGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVSGTALIDMYAKCGALTFA 339

Query: 311 ------VEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                 +EP D++ W ++IS    +    EA   F +M      P  AT +S+L AC+ +
Sbjct: 340 RALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHS 399

Query: 364 ANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNS 421
             +  G+   H       ++      + +VD+ ++ G + EA  L + M  +     W +
Sbjct: 400 GLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVA 459

Query: 422 MIFGCANH 429
           ++ GC NH
Sbjct: 460 LLSGCLNH 467



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 40/316 (12%)

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           LI+ + +  + +    +F+ M  + +     +W S+I         DE  + +  M+S+G
Sbjct: 24  LIASYGRINNIIPARNVFEKMPQRSIN----AWNSMIIAYSRTNYPDEVLNLYYRMISEG 79

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P S+T +  L AC+S  ++  G+ I   A+  G   D+ V S+++++YAK G + +A+
Sbjct: 80  IKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAK 139

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVG 464
            +FDKM +R+ V+W +MI G A  G   +AI+++  M+ ER + D +    ++ AC  +G
Sbjct: 140 IVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLG 199

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL---AEAYEMI------------ 509
             + G  +   M  +   M        ++D+  + G+L   +  +E I            
Sbjct: 200 DSKFGLSVHGHMVRREMNMDNVLQ-TSLIDMYAKNGKLELASRVFEGIPYKSVISWGALI 258

Query: 510 ----------KTMST---------EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
                     KT+++         +PDL    + L AC   GN+++ +    H+ +    
Sbjct: 259 SGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYL 318

Query: 551 SAANNMLLTDLYANAG 566
              +   L D+YA  G
Sbjct: 319 DKVSGTALIDMYAKCG 334


>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1490

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/423 (36%), Positives = 249/423 (58%), Gaps = 2/423 (0%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           ++  W A+       G   +A+ +F +M + G+  N   I S + AC +L  I  G ++H
Sbjct: 316 DVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSYLKVINLGSEVH 375

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
           S+ +K  F  D  V +SL+DMYSKCG +E A+KVFD +  KD+   N+M++GY Q G   
Sbjct: 376 SIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCG 435

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSV 321
           +A  L   +    V+PN++TWNT+ISG+ K+GD+     LFQ M   G V+ +  +W  +
Sbjct: 436 KAYELFTRMQDANVRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLI 495

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+G + N   D+A + F++M    F P S TI S+LPACA+    +  +EIHGC +   +
Sbjct: 496 IAGYIQNGKKDDALEIFRKMQFSRFMPNSVTILSLLPACANLLGTKMVREIHGCVLRRNL 555

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           +    V++AL D YAK G I  ++T+F  M  ++ +TWNS+I G   HG    A+ELFNQ
Sbjct: 556 DAIHAVKNALTDTYAKSGDIGYSKTIFMGMETKDIITWNSLIGGYVLHGSYGPALELFNQ 615

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M+ +  K +  + ++++ A   +G V+ G+++F  +   Y I+P  EH + MV L GR+ 
Sbjct: 616 MKTQGIKPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVSLYGRSN 675

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           RL EA + I+ M+ + +  +W + L  C+ HG+I++A  AA++L  LEPE+     +++ 
Sbjct: 676 RLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHAAENLFSLEPENTVTENIVSQ 735

Query: 561 LYA 563
           +YA
Sbjct: 736 IYA 738



 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 168/519 (32%), Positives = 275/519 (52%), Gaps = 13/519 (2%)

Query: 57  NGIFIEAHYKM-PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG  +EA   +  +  +   +  + Y   +E  I   ++  G+ILHA+    GL     +
Sbjct: 59  NGSLLEAEKALDSLFQQGSKVKRSTYLNLLESCIDSGSIHLGRILHARF---GLFPEPDV 115

Query: 116 --ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
              TKL++ Y +C  +  AR +FD + + N++ W A+ GAY+R    +E   +F  M  +
Sbjct: 116 FVETKLLSMYAKCGCLVDARKVFDSMRERNLYTWSAMIGAYSRENRWREVSKLFRLMMEE 175

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G+  + F+ P +L+ C +  D+ TG+ IHS+V+K    +   V +S++ +Y+KCG  + A
Sbjct: 176 GVLPDDFLFPKILQGCANCGDVETGKLIHSVVIKLGMSSCLRVSNSILAVYAKCGEWDFA 235

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
            K F  M E+D+VA N+++  Y Q G   EA+ LVEE+    + P +VTWN LI G+++ 
Sbjct: 236 TKFFRRMKERDVVAWNSVLLAYCQNGKHEEAVELVEEMEKEGISPGLVTWNILIGGYNQL 295

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G       L Q M   G+  DV +WT++ISGL+HN    +A D F++M   G  P + TI
Sbjct: 296 GKCDAAMDLMQKMENFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTI 355

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S + AC+    +  G E+H  A+ MG   D+ V ++LVDMY+KCG + +AR +FD +  
Sbjct: 356 MSAVSACSYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKN 415

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           ++  TWNSMI G    GYC +A ELF +M++   + + +++  +++     G       L
Sbjct: 416 KDVYTWNSMITGYCQAGYCGKAYELFTRMQDANVRPNIITWNTMISGYIKNGDEGEAMDL 475

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACK 529
           F  M++  K+   T  +  ++    + G+  +A E+ + M      P+     +LL AC 
Sbjct: 476 FQRMEKDGKVQRNTATWNLIIAGYIQNGKKDDALEIFRKMQFSRFMPNSVTILSLLPACA 535

Query: 530 N-HGNIELAEIAAKHLSE-LEPESAANNMLLTDLYANAG 566
           N  G   + EI    L   L+   A  N  LTD YA +G
Sbjct: 536 NLLGTKMVREIHGCVLRRNLDAIHAVKNA-LTDTYAKSG 573



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%)

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           RM  D   + N   W  +   Y + G   +A+ +F +M       N   I S+L AC +L
Sbjct: 478 RMEKDGKVQRNTATWNLIIAGYIQNGKKDDALEIFRKMQFSRFMPNSVTILSLLPACANL 537

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
                  +IH  VL+ +      V ++L D Y+K G +  +K +F  M  KDI+  N+++
Sbjct: 538 LGTKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIGYSKTIFMGMETKDIITWNSLI 597

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
            GYV  G    AL L  ++ T  +KPN  T +++I
Sbjct: 598 GGYVLHGSYGPALELFNQMKTQGIKPNRGTLSSII 632



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 37/222 (16%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  ++   L  +  +   L   Y +  +I +++ +F  +   +I  W +L G Y   G 
Sbjct: 546 IHGCVLRRNLDAIHAVKNALTDTYAKSGDIGYSKTIFMGMETKDIITWNSLIGGYVLHGS 605

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           +  A+ +F++M  QG+K N   + S++ A G + ++  G+K+      +S   D  ++ +
Sbjct: 606 YGPALELFNQMKTQGIKPNRGTLSSIILAHGLMGNVDEGKKVF-----YSIANDYHIIPA 660

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L      C                     +AMVS Y +     EAL  ++E+      P 
Sbjct: 661 L----EHC---------------------SAMVSLYGRSNRLEEALQFIQEMNIQSETP- 694

Query: 280 VVTWNTLISGFSKSGDQVM----VSKLFQLMRAKGVEPDVVS 317
              W + ++G    GD  M       LF L     V  ++VS
Sbjct: 695 --IWESFLTGCRIHGDIDMAIHAAENLFSLEPENTVTENIVS 734


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 167/502 (33%), Positives = 270/502 (53%), Gaps = 35/502 (6%)

Query: 100 LHAQLIVSGLARLTQIAT-KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           LHA  +  GL R    A+  L+  Y     +  A   FDE+   ++  W A+     R  
Sbjct: 90  LHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNA 149

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
              EAV +F  M ++G+  +   + SVL  C  L D      +H   +KH    + FV +
Sbjct: 150 RAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCN 209

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           ++ID+Y K G +E+ +KVFD M  +D+V  N+++SG+ Q G    A+ +   +    V P
Sbjct: 210 AMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSP 269

Query: 279 NVVTWNTLISGFSKSGD------------------------------QVMVSKLFQLMRA 308
           +V+T  +L S  ++ GD                                 +SK+    R 
Sbjct: 270 DVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRM 329

Query: 309 KGVEP--DVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPACASAAN 365
               P  D VSW ++I+G + N    EA   +  M   +G  P   T  S+LPA +    
Sbjct: 330 FDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGA 389

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +++G  +H  +I  G+  D++V + ++D+YAKCG + EA  LF++   R+T  WN++I G
Sbjct: 390 LQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISG 449

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              HG+  +A+ LF+QM++     DH++F ++L AC H GLV+ G+  FNMMQ  Y I P
Sbjct: 450 VGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKP 509

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HYACMVD+ GRAG+L +A++ I+ M  +PD  +WGALLGAC+ HGN+E+ ++A+++L
Sbjct: 510 IAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNL 569

Query: 545 SELEPESAANNMLLTDLYANAG 566
            EL+P++    +L++++YA  G
Sbjct: 570 FELDPKNVGYYVLMSNMYAKVG 591



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 162/407 (39%), Gaps = 46/407 (11%)

Query: 57  NGIFIEAHYKMPIISRSFHLSP--AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           NG+  EA +    + +   L P    +   +  Y    ALQ G  +HA  I +GL     
Sbjct: 351 NGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVY 410

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + T +I  Y +C  +  A +LF++ P+ +   W A+       G+  +A+++F +M  +G
Sbjct: 411 VGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEG 470

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEK 232
           +  +     S+L AC H   +  G    ++ ++ ++G        + ++DM+ + G ++ 
Sbjct: 471 ISPDHVTFVSLLAACSHAGLVDQGRNFFNM-MQTAYGIKPIAKHYACMVDMFGRAGQLDD 529

Query: 233 AKKVFDEM-VEKDIVAMNAM-----VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
           A      M ++ D     A+     + G V+ G    + NL E      + P  V +  L
Sbjct: 530 AFDFIRNMPIKPDSAIWGALLGACRIHGNVEMG-KVASQNLFE------LDPKNVGYYVL 582

Query: 287 ISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV---------ISG------LVHNFC 330
           +S  ++K G    V ++  L+R + ++     W+S+          SG        H   
Sbjct: 583 MSNMYAKVGKWDGVDEVRSLVRRQNLQ-KTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEI 641

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-----EGDL 385
             E  D   ++ S G+ P  + +   +        +    E    AI  G+        L
Sbjct: 642 QRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSE--RLAIAFGIINTPPRTPL 699

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H+   L      CG    A     K++ER  +  +S  F     GYC
Sbjct: 700 HIYKNL----RVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYC 742



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 46/270 (17%)

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
           P V   ++  NTLIS FS               RA      +     ++          +
Sbjct: 26  PHVHAPLLLANTLISAFS---------------RASLPRLALPLLRHLLLSSPLLPLRPD 70

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALV 392
           AF TF  +L     P +A                   ++H CA+ +G + GD     ALV
Sbjct: 71  AF-TFPPLLRAAQGPGTAA------------------QLHACALRLGLLRGDAFASGALV 111

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
             Y + G + +A   FD+M  R+   WN+M+ G   +    EA+ LF +M  E    D +
Sbjct: 112 HAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAV 171

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYAC--MVDLLGRAGRLAEAYE 507
           + ++VL  C     V LG R   +    Y +      E + C  M+D+ G+ G L E  +
Sbjct: 172 TVSSVLPMC-----VLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRK 226

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +   MS+  DL  W +++   +  G +  A
Sbjct: 227 VFDGMSSR-DLVTWNSIISGHEQGGQVASA 255


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 277/473 (58%), Gaps = 12/473 (2%)

Query: 100 LHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           LH++++++   R+   +A KL+  Y+       AR +FD   + N+  +  +  +Y    
Sbjct: 57  LHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNN 116

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            + EA+++F  M       + +  P VLKAC  L ++  G ++H  ++K    T+ F+ +
Sbjct: 117 LYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGN 176

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +L+ MY KCG + +A+KV D+M  +D+V+ N+MV+GY Q G   +AL + +E+ +  +  
Sbjct: 177 ALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNH 236

Query: 279 NVVTWNTL--ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           +  T  +L  +  ++   +   +  +F+ M  K    +++SW  +I+  V+N   +EA  
Sbjct: 237 DAGTMASLSPVVCYTSLENVQYIHNMFERMTKK----NLISWNVMIAIYVNNSMPNEAVS 292

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M   G  P + TI+S+LPAC   + +  G+ +H       +  +L + +AL+DMYA
Sbjct: 293 LFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYA 352

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAIELFNQM-EERKKLDHLSF 453
           KCG + EAR +FDKM  R+ V+W SM+  +G +  GY  +A+ LF +M +  +  D ++F
Sbjct: 353 KCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGY--DAVALFAKMLDSGQNPDSIAF 410

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
            +VL+AC H GL++ G+  F MM E+Y I+PR EH+ACMVDL GRAG + EAY  IK M 
Sbjct: 411 VSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMP 470

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            EP+  VWGALL AC+ H  +++  +AA  L +L P+ +   +LL+++YA AG
Sbjct: 471 MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAG 523



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ LH  +    L     +   L+  Y +C  +  AR +FD++   ++  W ++  
Sbjct: 321 ALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMS 380

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY R G   +AV +F +M   G   +     SVL AC H   +  G     + +   +G 
Sbjct: 381 AYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRM-MTEQYGI 439

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
              +   + ++D++ + G VE+A     +M
Sbjct: 440 VPRIEHFACMVDLFGRAGEVEEAYSFIKQM 469


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 163/510 (31%), Positives = 283/510 (55%), Gaps = 42/510 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G I+H  +   G+ +   +   L++ Y +   +   R +FD++   +   W  +  
Sbjct: 290 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 349

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++ G ++E++ +F EM +   K ++  I S+L+ACGHL D+  G+ +H  ++   +  
Sbjct: 350 GYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 408

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    + LI+MY+KCG++  +++VF  M  KD V+ N+M++ Y+Q G   EA+ L + + 
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK 468

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
           T  VKP+ VT+                                   NTL+  ++K G+  
Sbjct: 469 TD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMG 527

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K+F+ M+A+    D+++W ++I+  VH+   +        M ++G  P  AT+ SIL
Sbjct: 528 DSLKVFENMKAR----DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSIL 583

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P C+  A  R+GKEIHGC   +G+E D+ V + L++MY+KCG +  +  +F  M  ++ V
Sbjct: 584 PVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVV 643

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TW ++I  C  +G   +A+  F +ME    + DH++F A++ AC H GLVE G   F+ M
Sbjct: 644 TWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRM 703

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           ++ YKI PR EHYAC+VDLL R+  L +A + I +M  +PD  +WGALL AC+  G+ E+
Sbjct: 704 KKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEI 763

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           A+  ++ + EL P+     +L++++YA  G
Sbjct: 764 AQRVSERIIELNPDDTGYYVLVSNVYAALG 793



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 235/496 (47%), Gaps = 52/496 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD-EIPKTNIHRWIALTGAYARRG 158
           LH+ +I  GL      + KLI  Y   ++   +  +F    P  N++ W ++  A    G
Sbjct: 94  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNG 153

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
              EA++++ E     L+ + +  PSV+ AC  L D    + IH  VL   FG+D ++ +
Sbjct: 154 LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGN 213

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL------------- 265
           +LIDMY +   ++KA+KVF+EM  +D+V+ N+++SGY   G   EAL             
Sbjct: 214 ALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVP 273

Query: 266 -------------------------NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
                                     L+E+IG   +K +V+  N L+S + K    +   
Sbjct: 274 DSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG---IKKDVIVNNGLLSMYCKFNGLIDGR 330

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           ++F  M    V  D VSW ++I G       +E+   F EM++Q F P   TI+SIL AC
Sbjct: 331 RIFDKM----VLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQAC 385

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
               ++  GK +H   I  G E D    + L++MYAKCG +  ++ +F  M  +++V+WN
Sbjct: 386 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 445

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           SMI     +G  DEA++LF  M+   K D +++  +L+    +G + LG+ L   +  K 
Sbjct: 446 SMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLA-KM 504

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
                      +VD+  + G + ++ ++ + M    D+  W  ++ +C +    E   + 
Sbjct: 505 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHS---EDCNLG 560

Query: 541 AKHLSELEPESAANNM 556
            + +S +  E    +M
Sbjct: 561 LRMISRMRTEGVTPDM 576



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 243/530 (45%), Gaps = 50/530 (9%)

Query: 57  NGIFIEAHYKMPIISRSFHLSPAAYS--ERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           NG+F EA   +   ++   L P  Y+    I         +  K +H +++  G      
Sbjct: 152 NGLFSEA-LSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLY 210

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I   LI  Y    ++  AR +F+E+P  ++  W +L   Y   GY  EA+ +++     G
Sbjct: 211 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 270

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +  + + + SVL+ACG L  +  G+ IH L+ K     D  V + L+ MY K   +   +
Sbjct: 271 VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGR 330

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------- 283
           ++FD+MV +D V+ N M+ GY Q GL  E++ L  E+   + KP+++T            
Sbjct: 331 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLG 389

Query: 284 ------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                                   N LI+ ++K G+ +   ++F  M+ K    D VSW 
Sbjct: 390 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK----DSVSWN 445

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           S+I+  + N   DEA   FK M+     P S T   +L       ++  GKE+H     M
Sbjct: 446 SMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM 504

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           G   ++ V + LVDMYAKCG + ++  +F+ M  R+ +TWN++I  C +   C+  + + 
Sbjct: 505 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 564

Query: 440 NQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           ++M  E    D  +  ++L  C  +     G+ +   +  K  +         ++++  +
Sbjct: 565 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF-KLGLESDVPVGNVLIEMYSK 623

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
            G L  ++++ K M T+ D+  W AL+ AC  +G     + A +   E+E
Sbjct: 624 CGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE---GKKAVRAFGEME 669



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 198/442 (44%), Gaps = 63/442 (14%)

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
           + + V HE      +Q +F   S+ +A    +      K+HSL++           + LI
Sbjct: 61  KTLRVLHECS----RQTLF--SSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLI 114

Query: 222 DMYSKCGSVEKAKKVFD-EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
             Y+       +  VF       ++   N+++      GL +EAL+L  E    R++P+ 
Sbjct: 115 AKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDT 174

Query: 281 VTW-----------------------------------NTLISGFSKSGDQVMVSKLFQL 305
            T+                                   N LI  + +  D     K+F+ 
Sbjct: 175 YTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEE 234

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  +    DVVSW S+ISG   N   +EA + +    + G  P S T+SS+L AC    +
Sbjct: 235 MPLR----DVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGS 290

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G  IHG    +G++ D+ V + L+ MY K   + + R +FDKM  R+ V+WN+MI G
Sbjct: 291 VEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICG 350

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
            +  G  +E+I+LF +M  + K D L+ T++L AC H+G +E G+ + + M         
Sbjct: 351 YSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMI-------- 402

Query: 486 TEHYAC-------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           T  Y C       ++++  + G L  + E+   M  + D   W +++     +G+ + A 
Sbjct: 403 TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAM 461

Query: 539 IAAKHL-SELEPESAANNMLLT 559
              K + ++++P+S    MLL+
Sbjct: 462 KLFKMMKTDVKPDSVTYVMLLS 483



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 149/359 (41%), Gaps = 5/359 (1%)

Query: 57  NGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA 116
           NG F EA     ++          Y   + +  +   L  GK LH  L   G      ++
Sbjct: 454 NGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVS 513

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
             L+  Y +C  +  +  +F+ +   +I  W  +  +          + +   M  +G+ 
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 573

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            ++  + S+L  C  L+    G++IH  + K    +D  V + LI+MYSKCGS+  + +V
Sbjct: 574 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 633

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F  M  KD+V   A++S     G   +A+    E+    + P+ V +  +I   S SG  
Sbjct: 634 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLV 693

Query: 297 VMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                 F  M+    +EP +  +  V+  L  +   D+A D    +LS    P S+   +
Sbjct: 694 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDF---ILSMPLKPDSSIWGA 750

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           +L AC  + +    + +    I +  + D      + ++YA  G   + R++   +  R
Sbjct: 751 LLSACRMSGDTEIAQRVSERIIELNPD-DTGYYVLVSNVYAALGKWDQVRSIRKSIKAR 808


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 171/553 (30%), Positives = 285/553 (51%), Gaps = 62/553 (11%)

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM 134
            L    Y   +++    ++   GK +H+ +  + +     +  KL++FY  C ++   R 
Sbjct: 96  ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRR 155

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH-------------------------- 168
           +FD + K N++ W  +   YA+ G  +E++ +F                           
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 169 -------------------------EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
                                    +M   G+  ++  I SVL  C +   +  G+ +HS
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
           L +K SF       ++L+DMYSKCG ++ A +VF++M E+++V+  +M++GY + G +  
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           A+ L++++    VK +VV   +++   ++SG       +   ++A  +E ++    +++ 
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFC----------PTSATISSILPACASAANMRRGKEIH 373
                   + A   F  M+ +             P S T++ +LPACAS + + RGKEIH
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH 455

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
           G  +  G   D HV +ALVD+Y KCG +  AR LFD +  ++ V+W  MI G   HGY +
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 434 EAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           EAI  FN+M +   + D +SF ++L AC H GL+E G R F +M+  + I P+ EHYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           VDLL R G L++AYE ++T+   PD  +WGALL  C+N+ +IELAE  A+ + ELEPE+ 
Sbjct: 576 VDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENT 635

Query: 553 ANNMLLTDLYANA 565
              +LL ++YA A
Sbjct: 636 GYYVLLANIYAEA 648


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 170/486 (34%), Positives = 278/486 (57%), Gaps = 12/486 (2%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKT 142
           + ++ + ++L++ K + A +  + L     ++ KL+     T   ++H+AR LF +I   
Sbjct: 9   LALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNP 68

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKI 201
           ++  +  L    +       A+ +F EM  + +   + F    +LKA  +   +  G ++
Sbjct: 69  DVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQL 128

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H L + +   +  FV ++LI MY++C  +  A+KVFDEM+E +IVA NA+V+   +    
Sbjct: 129 HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFR---- 184

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
            E +   E++       N+ +WN +++G++K+G+  +  ++F  M  K    D VSW+++
Sbjct: 185 CEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLK----DDVSWSTM 240

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I G  HN   ++AF  F+E+  +G  P   +++ +L ACA A     G+ +HG     G 
Sbjct: 241 IVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGF 300

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
              + V +AL+D Y+KCG +  AR +FD M  R+ V+W +MI G A HGY +EAI LFN+
Sbjct: 301 LQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNE 360

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           MEE   K D ++F ++L AC H GLV+LG   F+ M   Y I P  EHY CMVDL GRAG
Sbjct: 361 MEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAG 420

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           +L +AY+ +  M   P+  VW  LLGAC  HGN+ LA    + LSEL+PE++ +++LL++
Sbjct: 421 KLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSN 480

Query: 561 LYANAG 566
           +YA AG
Sbjct: 481 IYAVAG 486


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 169/502 (33%), Positives = 265/502 (52%), Gaps = 32/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G++LH   + +GL     + + L+  YT+   I   R +F E+P  N+  W A+     R
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            GY++EA+  F EM    ++ + +     LKAC     +  G +IH+  +K  F   +FV
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L  MY+KCG +E    +F++M  +D+V+   +++  VQ G    A+     +    V
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDV 314

Query: 277 KPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRAKG 310
            PN  T+  +ISG +     + G+Q+                     M +K  QL  +  
Sbjct: 315 SPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSV 374

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           +       D+VSW+++I+G        EAF+    M  +G  PT   ++S+L AC + A 
Sbjct: 375 IFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAI 434

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GK++H   + +G+E    V SAL++MY KCG I EA  +FD     + V+W +MI G
Sbjct: 435 LEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMING 494

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HGY  E I+LF ++     + D ++F  VL+AC H GLV+LG R FN M +KY+I P
Sbjct: 495 YAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISP 554

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             EHY CM+DLL RAGRL++A  MI+ M    D  VW  LL AC+ HG++E     A+ +
Sbjct: 555 SKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERI 614

Query: 545 SELEPESAANNMLLTDLYANAG 566
            +LEP  A  ++ L ++YA+ G
Sbjct: 615 LQLEPNCAGTHITLANIYASKG 636



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 217/446 (48%), Gaps = 51/446 (11%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVL 186
           ++ +AR +FD++ + +   W  L   Y       EA+ +F  M ++ GL+ + F++    
Sbjct: 64  HLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAH 123

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
           KACG  SD+  GE +H   +K       FV S+L+DMY+K G + + ++VF EM  +++V
Sbjct: 124 KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVV 183

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------------------- 283
           +  A+++G V+ G   EAL    E+   RV+ +  T+                       
Sbjct: 184 SWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQA 243

Query: 284 ------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                       NTL + ++K G       LF+ M  +    DVVSWT++I+ LV     
Sbjct: 244 MKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR----DVVSWTTIITTLVQMGQE 299

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           + A   F  M      P   T ++++  CA+ A +  G+++H   + +G+   L V +++
Sbjct: 300 ECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSI 359

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDH 450
           + MYAKCG ++ +  +F +M+ R+ V+W+++I G +  G+  EA EL + M  E  K   
Sbjct: 360 MTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTE 419

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA----CMVDLLGRAGRLAEAY 506
            +  +VL+AC ++ ++E G++L       Y +    EH A     ++++  + G + EA 
Sbjct: 420 FALASVLSACGNMAILEHGKQL-----HAYVLSIGLEHTAMVLSALINMYCKCGSIEEAS 474

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHG 532
            +      + D+  W A++     HG
Sbjct: 475 RIFDAAEND-DIVSWTAMINGYAEHG 499



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 157/338 (46%), Gaps = 70/338 (20%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G+ LHA ++  GLA    +   ++T Y +C  +  + ++F E+ + +I  W  +   
Sbjct: 334 IEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAG 393

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y++ G+  EA  +   M ++G K   F + SVL ACG+++ +  G+++H+ VL       
Sbjct: 394 YSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHT 453

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           A V+S+LI+MY KCGS+E+A ++FD     DIV+  AM++GY + G + E ++L E+I  
Sbjct: 454 AMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKI-- 511

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
           PRV                                 G+ PD V++  V+S   H    D 
Sbjct: 512 PRV---------------------------------GLRPDSVTFIGVLSACSHAGLVDL 538

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
            F  F  M  +           I P+          KE +GC               ++D
Sbjct: 539 GFRYFNAMSKK---------YQISPS----------KEHYGC---------------MID 564

Query: 394 MYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
           +  + G +S+A  + + M   R+ V W++++  C  HG
Sbjct: 565 LLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 602



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 172/376 (45%), Gaps = 66/376 (17%)

Query: 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP---RVKPNV-- 280
           K G +  A+++FD+M +KD ++   ++SGYV    ++EAL L + +      R+ P +  
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 281 -----------VTWNTLISGFS-KSG--DQVMV-----------SKLFQLMRAKGVEP-- 313
                      V +  L+ G++ K+G  + V V            K+F+  R     P  
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           +VVSWT++I+GLV    N EA   F EM        S T +  L ACA +  +  G+EIH
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
             A+  G +    V + L  MY KCG +    TLF+KMS R+ V+W ++I      G  +
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 434 EAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM----------------- 475
            A++ F +M E     +  +F AV++ C ++  +E G++L  +                 
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 476 -MQEK----------YKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLF 519
            M  K          +  M R +   ++ ++    + G ++EA+E++  M  E   P  F
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEF 420

Query: 520 VWGALLGACKNHGNIE 535
              ++L AC N   +E
Sbjct: 421 ALASVLSACGNMAILE 436



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 38/207 (18%)

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFT 454
           K G +  AR +FDKMS+++ ++W ++I G  N     EA+ LF  M  E   ++D    +
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 455 AVLTAC----------------CHVGLVE---LGQRLFNMMQEKYKI-----------MP 484
               AC                   GLV    +G  L +M  +  KI           M 
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIELA-EIA 540
               +  ++  L RAG   EA      M     E D + +   L AC + G +    EI 
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 541 AKHLSE-LEPESAANNMLLTDLYANAG 566
           A+ + +  +  S   N L T +Y   G
Sbjct: 241 AQAMKKGFDVSSFVANTLAT-MYNKCG 266


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 167/506 (33%), Positives = 277/506 (54%), Gaps = 34/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  GK +H  +   G      +A  L+  Y+    +  A  +F ++P  ++  W A+  
Sbjct: 136 SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMIS 195

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            + + G    A+ V + M  +G+K +   + S+L  C    D+  G  IH  VLKH   +
Sbjct: 196 GFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDS 255

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV ++LI+MYSK G ++ A+ VFD+M  +D+V+ N++++ Y Q    + AL   + + 
Sbjct: 256 DVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQ-VMVSKLFQLMRAKGVEPDVV--------------- 316
              ++P+++T  +L S FS+  DQ +  S L  ++R + ++ DVV               
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYM 375

Query: 317 ----------------SWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPA 359
                           SW ++++G   N    EA D +  M   +   P   T  SI+PA
Sbjct: 376 NCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPA 435

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            +    +++G +IH   I   +  D+ V + L+D+Y KCG + +A +LF ++    +V W
Sbjct: 436 YSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPW 495

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N++I     HG  +EA++LF  M  ER K DH++F ++L+AC H GLV+ GQ+ F++MQ+
Sbjct: 496 NAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQK 555

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +Y I P  +HY CMVDLLGRAG L +AYE+++ M  +PD  +WGALL ACK +GN EL  
Sbjct: 556 EYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGT 615

Query: 539 IAAKHLSELEPESAANNMLLTDLYAN 564
           +A+  L E++ E+    +LL+++YAN
Sbjct: 616 LASDRLLEVDSENVGYYVLLSNIYAN 641



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 152/519 (29%), Positives = 257/519 (49%), Gaps = 61/519 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           + + K LHA L+V G ++   ++TKLI  Y    +I  +R  FD I K NI  W ++  A
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 154 YARRGYHQEAVTVFHEMHIQ----GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           Y R G + EA+   +++        L+ + +  P +LKAC  L D   G+K+H  V K  
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMG 151

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F  D FV +SL+ +YS+ G ++ A KVF +M  KD+ + NAM+SG+ Q G A  AL ++ 
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQV--------------------------MVSKLF 303
            +    VK + +T  +++   ++S D +                          M SK  
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG 271

Query: 304 QLMRAKGVEP-----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           +L  A+ V       D+VSW S+I+    N     A   FK M   G  P   T+ S+  
Sbjct: 272 RLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTS 331

Query: 359 ACASAANMRRGKEIHGCAIVM-GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             +  ++ R  + I G  I    ++ D+ + +ALV+MYAK G+++ A T+FD++  ++T+
Sbjct: 332 IFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNM 475
           +WN+++ G   +G   EAI+ +N MEE +    +  ++ +++ A  HVG ++ G ++   
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEA----YEMIKTMSTEPDLFVWGALLGACKNH 531
           +  K  +        C++DL G+ GRL +A    YE+ +  S       W A++ +   H
Sbjct: 452 LI-KNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-----WNAIIASLGIH 505

Query: 532 GNIE---------LAE-IAAKHLSELEPESAANNMLLTD 560
           G  E         LAE + A H++ +   SA ++  L D
Sbjct: 506 GRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVD 544



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 40/286 (13%)

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
           ++   +K+H+L+L      +  + + LI++Y   G +  ++  FD + +K+I + N+++S
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIIS 93

Query: 254 GYVQRGLATEALNLVEEI----GTPRVKPNVVTWN-------TLISG------------- 289
            YV+ G   EA+N V ++    G   ++P+  T+        +L+ G             
Sbjct: 94  AYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFE 153

Query: 290 ------------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
                       +S+ G   +  K+F  M  K    DV SW ++ISG   N     A   
Sbjct: 154 DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK----DVGSWNAMISGFCQNGNAAGALGV 209

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
              M  +G    + T++SILP CA + ++  G  IH   +  G++ D+ V +AL++MY+K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
            G + +A+ +FD+M  R+ V+WNS+I     +     A+  F  M+
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  +HA+LI + L     +AT LI  Y +C  +  A  LF EIP+     W A+  
Sbjct: 441 ALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIA 500

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           +    G  +EA+ +F +M  + +K +     S+L AC H   +  G+K    +++  +G 
Sbjct: 501 SLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFD-IMQKEYGI 559

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALN 266
              +     ++D+  + G +EKA ++   M ++ D     A++S    Y    L T A +
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
            + E+ +  V   V+  N   +     G    V K+  L R +G+      W+SV+ G
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEG----VIKVRSLARDRGLR-KTPGWSSVVVG 672


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 167/506 (33%), Positives = 277/506 (54%), Gaps = 34/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  GK +H  +   G      +A  L+  Y+    +  A  +F ++P  ++  W A+  
Sbjct: 136 SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMIS 195

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            + + G    A+ V + M  +G+K +   + S+L  C    D+  G  IH  VLKH   +
Sbjct: 196 GFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDS 255

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV ++LI+MYSK G ++ A+ VFD+M  +D+V+ N++++ Y Q    + AL   + + 
Sbjct: 256 DVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQ-VMVSKLFQLMRAKGVEPDVV--------------- 316
              ++P+++T  +L S FS+  DQ +  S L  ++R + ++ DVV               
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYM 375

Query: 317 ----------------SWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPA 359
                           SW ++++G   N    EA D +  M   +   P   T  SI+PA
Sbjct: 376 NCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPA 435

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            +    +++G +IH   I   +  D+ V + L+D+Y KCG + +A +LF ++    +V W
Sbjct: 436 YSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPW 495

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N++I     HG  +EA++LF  M  ER K DH++F ++L+AC H GLV+ GQ+ F++MQ+
Sbjct: 496 NAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQK 555

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +Y I P  +HY CMVDLLGRAG L +AYE+++ M  +PD  +WGALL ACK +GN EL  
Sbjct: 556 EYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGT 615

Query: 539 IAAKHLSELEPESAANNMLLTDLYAN 564
           +A+  L E++ E+    +LL+++YAN
Sbjct: 616 LASDRLLEVDSENVGYYVLLSNIYAN 641



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 152/519 (29%), Positives = 257/519 (49%), Gaps = 61/519 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           + + K LHA L+V G ++   ++TKLI  Y    +I  +R  FD I K NI  W ++  A
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 154 YARRGYHQEAVTVFHEMHIQ----GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           Y R G + EA+   +++        L+ + +  P +LKAC  L D   G+K+H  V K  
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMG 151

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F  D FV +SL+ +YS+ G ++ A KVF +M  KD+ + NAM+SG+ Q G A  AL ++ 
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQV--------------------------MVSKLF 303
            +    VK + +T  +++   ++S D +                          M SK  
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG 271

Query: 304 QLMRAKGVEP-----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           +L  A+ V       D+VSW S+I+    N     A   FK M   G  P   T+ S+  
Sbjct: 272 RLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTS 331

Query: 359 ACASAANMRRGKEIHGCAIVM-GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             +  ++ R  + I G  I    ++ D+ + +ALV+MYAK G+++ A T+FD++  ++T+
Sbjct: 332 IFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNM 475
           +WN+++ G   +G   EAI+ +N MEE +    +  ++ +++ A  HVG ++ G ++   
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEA----YEMIKTMSTEPDLFVWGALLGACKNH 531
           +  K  +        C++DL G+ GRL +A    YE+ +  S       W A++ +   H
Sbjct: 452 LI-KNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-----WNAIIASLGIH 505

Query: 532 GNIE---------LAE-IAAKHLSELEPESAANNMLLTD 560
           G  E         LAE + A H++ +   SA ++  L D
Sbjct: 506 GRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVD 544



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 40/286 (13%)

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
           ++   +K+H+L+L      +  + + LI++Y   G +  ++  FD + +K+I + N+++S
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIIS 93

Query: 254 GYVQRGLATEALNLVEEI----GTPRVKPNVVTWN-------TLISG------------- 289
            YV+ G   EA+N V ++    G   ++P+  T+        +L+ G             
Sbjct: 94  AYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFE 153

Query: 290 ------------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
                       +S+ G   +  K+F  M  K    DV SW ++ISG   N     A   
Sbjct: 154 DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK----DVGSWNAMISGFCQNGNAAGALGV 209

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
              M  +G    + T++SILP CA + ++  G  IH   +  G++ D+ V +AL++MY+K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
            G + +A+ +FD+M  R+ V+WNS+I     +     A+  F  M+
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 12/238 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  +HA+LI + L     +AT LI  Y +C  +  A  LF EIP+     W A+  
Sbjct: 441 ALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIA 500

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           +    G  +EA+ +F +M  + +K +     S+L AC H   +  G+K    +++  +G 
Sbjct: 501 SLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFD-IMQKEYGI 559

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALN 266
              +     ++D+  + G +EKA ++   M ++ D     A++S    Y    L T A +
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
            + E+ +  V   V+  N   +     G    V K+  L R +G+      W+SV+ G
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEG----VIKVRSLARDRGLR-KTPGWSSVVVG 672


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 180/502 (35%), Positives = 264/502 (52%), Gaps = 33/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HA ++  G      +   L+T Y +C +I  AR +FD +  T+   W A+   +  
Sbjct: 216 GREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFE 275

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +  + +F  M    ++ N+  I SV  A G LS++G  +++H   +K  F  D   
Sbjct: 276 NHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAF 335

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MY+  G +  A K+F  M  KD ++  AM+SGY + G   +AL +   +    V
Sbjct: 336 CNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNV 395

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-------------------------- 310
            P+ VT  + ++  +  G   +  KL +L + KG                          
Sbjct: 396 SPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIE 455

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 E DVVSW+S+I+G   N  + EA   F+ ML     P S T  + L ACA+   
Sbjct: 456 VFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGA 514

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +R GKEIH   +  G+  + +V +AL+D+Y KCG  S A   F   SE++ V+WN M+ G
Sbjct: 515 LRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSG 574

Query: 426 CANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              HG  D A+ LFNQM E  +  D ++F A+L AC   G+V  G  LF+MM EK+ I+P
Sbjct: 575 FVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVP 634

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HYACMVDLL R G+L EAY +I  M  +PD  VWGALL  C+ H ++EL E+AAK +
Sbjct: 635 NLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVI 694

Query: 545 SELEPESAANNMLLTDLYANAG 566
            ELEP   A ++LL DLY +AG
Sbjct: 695 LELEPNDVAYHVLLCDLYTDAG 716



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 223/462 (48%), Gaps = 47/462 (10%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           ++   +++       I HA  +F ++P+ ++  W  + G Y + G+ +EA+ +++ M   
Sbjct: 132 RLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWA 191

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G++ +++  P VL+ CG + D   G ++H+ VL+  FG +  V+++L+ MY+KCG +  A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT----------- 282
           +KVFD M   D ++ NAM++G+ +       L L   +    V+PN++T           
Sbjct: 252 RKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 283 ------------------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                    N+LI  ++  G      K+F  M  K    D +SW
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK----DAMSW 367

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           T++ISG   N   D+A + +  M      P   TI+S L ACA    +  G ++H  A  
Sbjct: 368 TAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQN 427

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG-CANHGYCDEAIE 437
            G    + V +AL++MYAK   I +A  +F  M+E++ V+W+SMI G C NH    EA+ 
Sbjct: 428 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNH-RSFEALY 486

Query: 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDL 495
            F  M    K + ++F A L+AC   G +  G+ +   +    +    +E Y    ++DL
Sbjct: 487 YFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYV---LRCGIGSEGYVPNALLDL 543

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + G+ + A+    ++ +E D+  W  +L     HG  ++A
Sbjct: 544 YVKCGQTSYAWAQF-SVHSEKDVVSWNIMLSGFVAHGLGDIA 584



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 119/257 (46%), Gaps = 14/257 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+SGK +HA ++  G+     +   L+  Y +C    +A   F    + ++  W  +  
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
            +   G    A+++F++M   G   +     ++L AC     +  G E  H +  K S  
Sbjct: 574 GFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIV 633

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
            +    + ++D+ S+ G + +A  + + M ++ D     A+++G   +    L   A  +
Sbjct: 634 PNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKV 693

Query: 268 VEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
           + E+     +PN V ++ L+   ++ +G    V+++ + MR KG+E D   SW  V  G+
Sbjct: 694 ILEL-----EPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEV-KGV 747

Query: 326 VHNF-CNDEAFDTFKEM 341
            H F  +DE+    KE+
Sbjct: 748 THAFLTDDESHPQIKEI 764



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 13/187 (6%)

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-E 443
           L + +A++ M  + G I  A  +F KM ER+  +WN M+ G    G+ +EA++L+ +M  
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              + D  +F  VL  C  +    +G+ +   +  ++      +    +V +  + G + 
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL-RFGFGDEVDVLNALVTMYAKCGDIV 249

Query: 504 EAYEMIKTMSTEPDLFVWGALL-GACKNH---GNIELAEIAAKHLSELEPESAANNMLLT 559
            A ++   M+   D   W A++ G  +NH     +EL       L+ LE E   N M +T
Sbjct: 250 AARKVFDGMAVT-DCISWNAMIAGHFENHECEAGLEL------FLTMLENEVQPNLMTIT 302

Query: 560 DLYANAG 566
            +   +G
Sbjct: 303 SVTVASG 309


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 180/502 (35%), Positives = 264/502 (52%), Gaps = 33/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HA ++  G      +   L+T Y +C +I  AR +FD +  T+   W A+   +  
Sbjct: 216 GREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFE 275

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +  + +F  M    ++ N+  I SV  A G LS++G  +++H   +K  F  D   
Sbjct: 276 NHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAF 335

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MY+  G +  A K+F  M  KD ++  AM+SGY + G   +AL +   +    V
Sbjct: 336 CNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNV 395

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-------------------------- 310
            P+ VT  + ++  +  G   +  KL +L + KG                          
Sbjct: 396 SPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIE 455

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 E DVVSW+S+I+G   N  + EA   F+ ML     P S T  + L ACA+   
Sbjct: 456 VFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGA 514

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +R GKEIH   +  G+  + +V +AL+D+Y KCG  S A   F   SE++ V+WN M+ G
Sbjct: 515 LRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSG 574

Query: 426 CANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              HG  D A+ LFNQM E  +  D ++F A+L AC   G+V  G  LF+MM EK+ I+P
Sbjct: 575 FVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVP 634

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HYACMVDLL R G+L EAY +I  M  +PD  VWGALL  C+ H ++EL E+AAK +
Sbjct: 635 NLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVI 694

Query: 545 SELEPESAANNMLLTDLYANAG 566
            ELEP   A ++LL DLY +AG
Sbjct: 695 LELEPNDVAYHVLLCDLYTDAG 716



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 223/462 (48%), Gaps = 47/462 (10%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           ++   +++       I HA  +F ++P+ ++  W  + G Y + G+ +EA+ +++ M   
Sbjct: 132 RLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWA 191

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G++ +++  P VL+ CG + D   G ++H+ VL+  FG +  V+++L+ MY+KCG +  A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT----------- 282
           +KVFD M   D ++ NAM++G+ +       L L   +    V+PN++T           
Sbjct: 252 RKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 283 ------------------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                    N+LI  ++  G      K+F  M  K    D +SW
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK----DAMSW 367

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           T++ISG   N   D+A + +  M      P   TI+S L ACA    +  G ++H  A  
Sbjct: 368 TAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQN 427

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG-CANHGYCDEAIE 437
            G    + V +AL++MYAK   I +A  +F  M+E++ V+W+SMI G C NH    EA+ 
Sbjct: 428 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNH-RSFEALY 486

Query: 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDL 495
            F  M    K + ++F A L+AC   G +  G+ +   +    +    +E Y    ++DL
Sbjct: 487 YFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYV---LRCGIGSEGYVPNALLDL 543

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + G+ + A+    ++ +E D+  W  +L     HG  ++A
Sbjct: 544 YVKCGQTSYAWAQF-SVHSEKDVVSWNIMLSGFVAHGLGDIA 584



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 119/257 (46%), Gaps = 14/257 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+SGK +HA ++  G+     +   L+  Y +C    +A   F    + ++  W  +  
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
            +   G    A+++F++M   G   +     ++L AC     +  G E  H +  K S  
Sbjct: 574 GFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIV 633

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
            +    + ++D+ S+ G + +A  + + M ++ D     A+++G   +    L   A  +
Sbjct: 634 PNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKV 693

Query: 268 VEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
           + E+     +PN V ++ L+   ++ +G    V+++ + MR KG+E D   SW  V  G+
Sbjct: 694 ILEL-----EPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEV-KGV 747

Query: 326 VHNF-CNDEAFDTFKEM 341
            H F  +DE+    KE+
Sbjct: 748 THAFLTDDESHPQIKEI 764



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 13/187 (6%)

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-E 443
           L + +A++ M  + G I  A  +F KM ER+  +WN M+ G    G+ +EA++L+ +M  
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              + D  +F  VL  C  +    +G+ +   +  ++      +    +V +  + G + 
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL-RFGFGDEVDVLNALVTMYAKCGDIV 249

Query: 504 EAYEMIKTMSTEPDLFVWGALL-GACKNH---GNIELAEIAAKHLSELEPESAANNMLLT 559
            A ++   M+   D   W A++ G  +NH     +EL       L+ LE E   N M +T
Sbjct: 250 AARKVFDGMAVT-DCISWNAMIAGHFENHECEAGLEL------FLTMLENEVQPNLMTIT 302

Query: 560 DLYANAG 566
            +   +G
Sbjct: 303 SVTVASG 309


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 180/509 (35%), Positives = 266/509 (52%), Gaps = 77/509 (15%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           +A  +F+ I + N+  W  +   +A       A+ ++  M   G   N +  P +LK+C 
Sbjct: 16  YAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCA 75

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE------------------- 231
                  G +IH+ VLK   G D +V +SLI MY++ G +E                   
Sbjct: 76  KSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTA 135

Query: 232 ------------KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
                        A+KVFDE+ E+D+V+ NAM++GYV+ G   EAL L +E+    V+P+
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPD 195

Query: 280 ----------------------VVTW-----------------NTLISGFSKSGDQVMVS 300
                                 V +W                 N LI  +SK GD     
Sbjct: 196 EGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAF 255

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            LF+ +  K    DVVSW ++I G  H     EA   F+EML  G CP   T+ S+LPAC
Sbjct: 256 GLFEGLSCK----DVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPAC 311

Query: 361 ASAANMRRGKEIHGC--AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A    +  G+ IH      + GV  +  +R++L+DMYAKCG I  A  +F+ M  R+  +
Sbjct: 312 AHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS 371

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MIFG A HG  + A +LF++M   R + D ++F  +L+AC H GL++LG+++F  M 
Sbjct: 372 WNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMT 431

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y + P+ EHY CM+DLLG +G   EA EMI TM  EPD  +W +LL ACK HGN+ELA
Sbjct: 432 QDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELA 491

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E  A+ L ++EPE++ + +LL+++YA AG
Sbjct: 492 ESFAQKLIKIEPENSGSYVLLSNIYATAG 520



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 181/434 (41%), Gaps = 60/434 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K    G  I A     ++     L    ++  I +Y R+  L+  + 
Sbjct: 70  LLKSCAKS-----KAFEEGRQIHAQ----VLKLGCGLDRYVHTSLISMYARNGGLEDAR- 119

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
              ++  +   R     T LIT Y    +   AR +FDEI + ++  W A+   Y   G 
Sbjct: 120 ---KVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGR 176

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV----LKHSFGTDAF 215
           ++EA+ +F EM    ++ +   + SV+ AC     I  G ++HS V      H F +   
Sbjct: 177 YEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLK 236

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           +V++LID+YSKCG VE A  +F+ +  KD+V+ N ++ GY    L  EAL L +E+    
Sbjct: 237 IVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSG 296

Query: 276 VKPNVVT------------------W-------------------NTLISGFSKSGDQVM 298
             PN VT                  W                    +LI  ++K GD   
Sbjct: 297 ECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEA 356

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             ++F  M  + +     SW ++I G   +   + AFD F  M      P   T   +L 
Sbjct: 357 AHQVFNSMLYRSLS----SWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLS 412

Query: 359 ACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNT 416
           AC+ +  +  G++I         +   L     ++D+    G   EA  +   M  E + 
Sbjct: 413 ACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDG 472

Query: 417 VTWNSMIFGCANHG 430
           V W S++  C  HG
Sbjct: 473 VIWCSLLKACKKHG 486



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 6/262 (2%)

Query: 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           G +   +I   LI  Y++C ++  A  LF+ +   ++  W  L G Y     ++EA+ +F
Sbjct: 230 GFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLF 289

Query: 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG--TDAFVVSSLIDMYS 225
            EM   G   N   + SVL AC HL  I  G  IH  + K   G   +  + +SLIDMY+
Sbjct: 290 QEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYA 349

Query: 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT 285
           KCG +E A +VF+ M+ + + + NAM+ G+   G A  A +L   +   RV+P+ +T+  
Sbjct: 350 KCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVG 409

Query: 286 LISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
           L+S  S SG   +  ++F+ M +   + P +  +  +I  L H+    EA +    M  +
Sbjct: 410 LLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPME 469

Query: 345 GFCPTSATISSILPACASAANM 366
              P      S+L AC    N+
Sbjct: 470 ---PDGVIWCSLLKACKKHGNL 488


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 277/506 (54%), Gaps = 35/506 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +HA ++  G      +   LI FYT+C  +   R LFD++   NI  W  +   
Sbjct: 154 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 213

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +  +  EA+ +F EM+  G K + F   SVL +CG L  +  G ++H+  +K +  ++
Sbjct: 214 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESN 273

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV + LIDMY+K   +  AKKVFD M E+++++ NAM+ GY  +   +EAL L  E+  
Sbjct: 274 EFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 333

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSK-LFQLMRAKGV--------------------- 311
               P+++T+ +L+ G S S   + +SK +  L+   GV                     
Sbjct: 334 RLFPPSLLTFVSLL-GVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVK 392

Query: 312 ----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                     E D+V W ++  G   +  N+EA   +  +      P   T ++++ A +
Sbjct: 393 DARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAAS 452

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A++R G++ H   + MG++    V +ALVDMYAKCG I EAR +F+    R+ V WNS
Sbjct: 453 NLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNS 512

Query: 422 MIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI   A HG  +EA+ +F + M+E  + ++++F AVL+AC H G VE G   FN M   +
Sbjct: 513 MISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSM-PGF 571

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I P TEHYAC+V LLGR+G+L EA E I+ M  EP   VW +LL AC+  GN+EL + A
Sbjct: 572 GIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYA 631

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A+     +P+ + + +LL++++A+ G
Sbjct: 632 AEMAISTDPKDSGSYILLSNIFASKG 657



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 240/481 (49%), Gaps = 44/481 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G  LH  ++ SG  +   + T LI FY++  BI  AR++FD++ +     W  +   
Sbjct: 53  VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAG 112

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G    ++ +F +M    +  + +V+ SVL AC  L  +  G++IH+ VL+     D
Sbjct: 113 YTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 172

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             VV+ LID Y+KC  V+  +K+FD+MV K+I++   M+SGY+Q     EA+ L  E+  
Sbjct: 173 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 232

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
              KP                                   N    N LI  ++KS     
Sbjct: 233 LGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXD 292

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             K+F +M     E +V+S+ ++I G        EA + F EM  + F P+  T  S+L 
Sbjct: 293 AKKVFDVM----AEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLG 348

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
             AS   +   K+IHG  I  GV  DL   SAL+D+Y+KC ++ +AR +F++M+E++ V 
Sbjct: 349 VSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVV 408

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFN-MM 476
           WN+M FG   H   +EA++L++ ++  R+K +  +F A++TA  ++  +  GQ+  N ++
Sbjct: 409 WNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLV 468

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +      P   +   +VD+  + G + EA +M  + S   D+  W +++     HG  E 
Sbjct: 469 KMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEE 525

Query: 537 A 537
           A
Sbjct: 526 A 526



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 205/412 (49%), Gaps = 43/412 (10%)

Query: 157 RGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
            GY +EA+ VF ++  + G   N FV+ SV++AC  L  +  G ++H  V++  F  D +
Sbjct: 14  EGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVY 73

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V +SLID YSK G +E A+ VFD+++EK  V    +++GY + G +  +L L  ++    
Sbjct: 74  VGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETN 133

Query: 276 VKP-----------------------------------NVVTWNTLISGFSKSGDQVMVS 300
           V P                                   +V   N LI  ++K        
Sbjct: 134 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 193

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           KLF  M  K    +++SWT++ISG + N  + EA   F EM   G+ P     +S+L +C
Sbjct: 194 KLFDQMVVK----NIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 249

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            S   + +G+++H   I   +E +  V++ L+DMYAK   + +A+ +FD M+E+N +++N
Sbjct: 250 GSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYN 309

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI G ++     EA+ELF++M  R      L+F ++L     +  +EL +++  ++  K
Sbjct: 310 AMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII-K 368

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
             +       + ++D+  +   + +A  + + M+ E D+ VW A+      H
Sbjct: 369 XGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQH 419



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 166/367 (45%), Gaps = 32/367 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
            AL+ G+ +HA  I + L     +   LI  Y +   +  A+ +FD + + N+  + A+ 
Sbjct: 253 EALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMI 312

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y+ +    EA+ +FHEM ++    ++    S+L     L  +   ++IH L++K    
Sbjct: 313 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVS 372

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F  S+LID+YSKC  V+ A+ VF+EM EKDIV  NAM  GY Q     EAL L   +
Sbjct: 373 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 432

Query: 272 GTPRVKPNVVTWNTLISGFS-----KSGDQV-------------MVSKLFQLMRAK---- 309
              R KPN  T+  LI+  S     + G Q               V+     M AK    
Sbjct: 433 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSI 492

Query: 310 ---------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                     +  DVV W S+IS    +   +EA   F+EM+ +G  P   T  ++L AC
Sbjct: 493 EEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSAC 552

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTW 419
           + A  +  G          G++      + +V +  + G + EA+   +KM  E   + W
Sbjct: 553 SHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVW 612

Query: 420 NSMIFGC 426
            S++  C
Sbjct: 613 RSLLSAC 619



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 166/325 (51%), Gaps = 4/325 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  K +H  +I  G++      + LI  Y++C  +  AR +F+E+ + +I  W A+  
Sbjct: 355 ALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFF 414

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y +   ++EA+ ++  +     K N F   +++ A  +L+ +  G++ H+ ++K     
Sbjct: 415 GYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDF 474

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             FV ++L+DMY+KCGS+E+A+K+F+  + +D+V  N+M+S + Q G A EAL +  E+ 
Sbjct: 475 CPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMM 534

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              ++PN VT+  ++S  S +G        F  M   G++P    +  V+S L  +    
Sbjct: 535 KEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLF 594

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA +  ++M  +   P +    S+L AC  A N+  GK     AI    + D      L 
Sbjct: 595 EAKEFIEKMPIE---PAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPK-DSGSYILLS 650

Query: 393 DMYAKCGFISEARTLFDKMSERNTV 417
           +++A  G  ++ + + D+M     V
Sbjct: 651 NIFASKGMWADVKKVRDRMDSSEVV 675


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 291/512 (56%), Gaps = 46/512 (8%)

Query: 97  GKILHAQLIVSG-LARLTQIATKLITFYTECQ-NIHHARMLFDEIPKTNIHRWIALTGAY 154
           G+I++  ++ +G L     +  +LI  + +   ++  A  +FD++P+ N+  W  +   +
Sbjct: 147 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 206

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A+ G  ++A+ +F +M + G   + F   SVL AC  L  +  G+++HS V++     D 
Sbjct: 207 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 266

Query: 215 FVVSSLIDMYSKC---GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG-LATEALNLVEE 270
            V  SL+DMY+KC   GSV+ ++KVF++M E ++++  A+++ YVQ G    EA+ L  +
Sbjct: 267 CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK 326

Query: 271 IGTPRVKPNVVTW-----------------------------------NTLISGFSKSGD 295
           + +  ++PN  ++                                   N+LIS +++SG 
Sbjct: 327 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGR 386

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                K F ++     E ++VS+ +++ G   N  ++EAF  F E+   G   ++ T +S
Sbjct: 387 MEDARKAFDIL----FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 442

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L   AS   M +G++IHG  +  G + +  + +AL+ MY++CG I  A  +F++M +RN
Sbjct: 443 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRN 502

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
            ++W SMI G A HG+   A+E+F++M E   K + +++ AVL+AC HVG++  GQ+ FN
Sbjct: 503 VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 562

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M +++ I+PR EHYACMVDLLGR+G L EA E I +M    D  VW  LLGAC+ HGN 
Sbjct: 563 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 622

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           EL   AA+ + E EP+  A  +LL++L+A+AG
Sbjct: 623 ELGRHAAEMILEQEPDDPAAYILLSNLHASAG 654



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 250/494 (50%), Gaps = 47/494 (9%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI- 139
           YS  ++  IR R  Q GK++H +L+ SGL   + +   LI+ Y++C +   AR++F+ + 
Sbjct: 29  YSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMG 88

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
            K ++  W A+   +A      +A+  F +M   G   N +   +V++AC + +    GE
Sbjct: 89  NKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGE 148

Query: 200 KIHSLVLKHSF-GTDAFVVSSLIDMYSK-CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
            I+  V+K  +   D  V   LIDM+ K  G +  A KVFD+M E+++V    M++ + Q
Sbjct: 149 IIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQ 208

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG----DQVMVSKLFQLMRAKGV-- 311
            G A +A++L  ++      P+  T+++++S  ++ G     + + S++ +L  A  V  
Sbjct: 209 LGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCV 268

Query: 312 ----------------------------EPDVVSWTSVISGLVHNF-CNDEAFDTFKEML 342
                                       E +V+SWT++I+  V +  C+ EA + F +M+
Sbjct: 269 GCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI 328

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           S    P   + SS+L AC + ++   G++++  A+ +G+     V ++L+ MYA+ G + 
Sbjct: 329 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRME 388

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACC 461
           +AR  FD + E+N V++N+++ G A +   +EA  LFN++ +    +   +F ++L+   
Sbjct: 389 DARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 448

Query: 462 HVGLVELGQRLFN-MMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDL 518
            +G +  G+++   +++  YK    +    C  ++ +  R G +  A+++   M  + ++
Sbjct: 449 SIGAMGKGEQIHGRLLKGGYK----SNQCICNALISMYSRCGNIEAAFQVFNEME-DRNV 503

Query: 519 FVWGALLGACKNHG 532
             W +++     HG
Sbjct: 504 ISWTSMITGFAKHG 517



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 180/378 (47%), Gaps = 45/378 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIAL 150
           L  GK LH+++I  GLA    +   L+  Y +C    ++  +R +F+++P+ N+  W A+
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 306

Query: 151 TGAYARRGY-HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
             AY + G   +EA+ +F +M    ++ N F   SVLKACG+LSD  TGE+++S  +K  
Sbjct: 307 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 366

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             +   V +SLI MY++ G +E A+K FD + EK++V+ NA+V GY +   + EA  L  
Sbjct: 367 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 426

Query: 270 EIGTPRV-----------------------------------KPNVVTWNTLISGFSKSG 294
           EI    +                                   K N    N LIS +S+ G
Sbjct: 427 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 486

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           +     ++F  M  +    +V+SWTS+I+G   +     A + F +ML  G  P   T  
Sbjct: 487 NIEAAFQVFNEMEDR----NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 542

Query: 355 SILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS- 412
           ++L AC+    +  G K  +      G+   +   + +VD+  + G + EA    + M  
Sbjct: 543 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 602

Query: 413 ERNTVTWNSMIFGCANHG 430
             + + W +++  C  HG
Sbjct: 603 MADALVWRTLLGACRVHG 620



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 159/324 (49%), Gaps = 7/324 (2%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G+ +++  +  G+A +  +   LI+ Y     +  AR  FD + + N+  + A+   YA
Sbjct: 354 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 413

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +    +EA  +F+E+   G+  + F   S+L     +  +G GE+IH  +LK  + ++  
Sbjct: 414 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 473

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++LI MYS+CG++E A +VF+EM ++++++  +M++G+ + G AT AL +  ++    
Sbjct: 474 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 533

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            KPN +T+  ++S  S  G      K F  M +  G+ P +  +  ++  L  +    EA
Sbjct: 534 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 593

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV-D 393
            +    M        +    ++L AC    N   G+  H   +++  E D      L+ +
Sbjct: 594 MEFINSM---PLMADALVWRTLLGACRVHGNTELGR--HAAEMILEQEPDDPAAYILLSN 648

Query: 394 MYAKCGFISEARTLFDKMSERNTV 417
           ++A  G   +   +   M ERN +
Sbjct: 649 LHASAGQWKDVVKIRKSMKERNLI 672



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+ +H +L+  G      I   LI+ Y+ C NI  A  +F+E+   N+  W ++  
Sbjct: 452 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 511

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A+ G+   A+ +FH+M   G K N     +VL AC H+  I  G+K  +S+  +H   
Sbjct: 512 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 571

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                 + ++D+  + G + +A +  + M
Sbjct: 572 PRMEHYACMVDLLGRSGLLVEAMEFINSM 600



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 4/195 (2%)

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           AF T   M  Q   P   T S +L +C    N + GK +H   +  G+E D  V + L+ 
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 394 MYAKCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
           +Y+KCG    AR +F+ M ++R+ V+W++M+   AN+    +AI  F  M E     +  
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR-AGRLAEAYEMIK 510
            F AV+ AC +     +G+ ++  + +   +         ++D+  + +G L  AY++  
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189

Query: 511 TMSTEPDLFVWGALL 525
            M  E +L  W  ++
Sbjct: 190 KMP-ERNLVTWTLMI 203


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 178/497 (35%), Positives = 287/497 (57%), Gaps = 17/497 (3%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSG-LARLTQIATKLITFYTECQN-IHHARMLF 136
            A   +  ++ R R+L+  K +HA +++ G L+  + +   L       +  I HA ++F
Sbjct: 6   GAQRRQPPLWRRCRSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVF 65

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG----LKQNIFVIPSVLKACGHL 192
           D+IP+ ++  +  L    A     ++AV+++  M  +G    ++ +    P VL+AC  +
Sbjct: 66  DQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAM 125

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
              GTG ++H+ V+K    +DAFV ++LI M++ CG +  A  +FD    +D VA +AM+
Sbjct: 126 GAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMI 185

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
           +G  +RG    A  L +E   P VK +V +WN +I+ ++K G+      LF  +     E
Sbjct: 186 TGCARRGDIVAARKLFDE--CP-VKDHV-SWNVMITAYAKRGEMAPARVLFNRI----PE 237

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            DVVSW ++ISG V    +  A + F++M   G  P   T+ S+L ACA + ++  G+ +
Sbjct: 238 RDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRL 297

Query: 373 HGCAIVMGVEGDLHV--RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           H     M +     V   +AL+DMYAKCG +  A  +F  M +++  TWNS+I G A HG
Sbjct: 298 HSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHG 357

Query: 431 YCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
           +  E+I++F +M +E+ + D ++F AVL AC H G+V+ G+  FN+MQ  Y+I P  +HY
Sbjct: 358 HVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHY 417

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
            CMVD+LGRAG L EA+E I TM  EP+  +W  LLGAC+ HG IELAE A + L +   
Sbjct: 418 GCMVDMLGRAGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARN 477

Query: 550 ESAANNMLLTDLYANAG 566
           + + + +LL+++YA+AG
Sbjct: 478 DESGDYVLLSNIYASAG 494


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/439 (36%), Positives = 255/439 (58%), Gaps = 12/439 (2%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           +A  LF  I + +   W  +    A+      A++++ +M    ++ + F  P VLKAC 
Sbjct: 30  YAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACT 89

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            L  +  G  +H  V +  F ++ FV ++LI  ++ CG +  A+ +FD   ++D+VA +A
Sbjct: 90  RLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSA 149

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
           + +GY +RG    A  L +E+       ++V+WN +I+G++K G+     KLF  +  + 
Sbjct: 150 LTAGYARRGELGVARQLFDEMPVK----DLVSWNVMITGYAKRGEMESARKLFDEVPKR- 204

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
              DVV+W ++I+G V    N +A + F+EM S G  P   T+ S+L AC    ++  G+
Sbjct: 205 ---DVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQ 261

Query: 371 EIHGCAIVMGVEGDLHV--RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
            IH C   MG   DL V   +AL+DMYAKCG I  A  +F  M E++  TWNS++ G A 
Sbjct: 262 RIHCCISEMGFR-DLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAF 320

Query: 429 HGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           HG+ +++I LF +M + K + D ++F  VL AC H G VE G++ F++M+++Y I P   
Sbjct: 321 HGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIR 380

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           HY CMVDLLGRAG L EA++ I TM  EP+  VW  LLGAC+ HGN+EL   A   L ++
Sbjct: 381 HYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKM 440

Query: 548 EPESAANNMLLTDLYANAG 566
             + + + +LL+++YA+ G
Sbjct: 441 RHDESGDYVLLSNIYASRG 459



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 134/254 (52%), Gaps = 5/254 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +IT Y +   +  AR LFDE+PK ++  W A+   Y   G +Q+A+ +F EM   G   +
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF-GTDAFVVSSLIDMYSKCGSVEKAKKVF 237
              + S+L AC  L D+  G++IH  + +  F      + ++LIDMY+KCGS+ +A +VF
Sbjct: 241 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVF 300

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
             M EKD+   N+++ G    G A ++++L  E+   +++P+ +T+  ++   S +G   
Sbjct: 301 QGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVE 360

Query: 298 MVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              + F LMR +  +EP++  +  ++  L      +EAFD    M  +   P +    ++
Sbjct: 361 EGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIE---PNAIVWRTL 417

Query: 357 LPACASAANMRRGK 370
           L AC    N+  G+
Sbjct: 418 LGACRIHGNVELGR 431



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 151/369 (40%), Gaps = 81/369 (21%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H ++   G    T +   LI F+  C ++  AR LFD   K ++  W ALT  YARRG 
Sbjct: 100 VHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGE 159

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
              A  +F EM ++                                       D    + 
Sbjct: 160 LGVARQLFDEMPVK---------------------------------------DLVSWNV 180

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           +I  Y+K G +E A+K+FDE+ ++D+V  NAM++GYV  G   +AL + EE+ +    P+
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240

Query: 280 VVTW------------------------------------NTLISGFSKSGDQVMVSKLF 303
            VT                                     N LI  ++K G  V   ++F
Sbjct: 241 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVF 300

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           Q MR    E DV +W SV+ GL  +   +++   F EM      P   T   +L AC+ A
Sbjct: 301 QGMR----EKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHA 356

Query: 364 ANMRRGKEIHGCA-IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNS 421
             +  G++          +E ++     +VD+  + G ++EA    D M  E N + W +
Sbjct: 357 GRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRT 416

Query: 422 MIFGCANHG 430
           ++  C  HG
Sbjct: 417 LLGACRIHG 425



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFT 454
           A  G ++ A  LF  ++E +T  WN+MI G A       AI L++QME    + D  +F 
Sbjct: 23  AISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFP 82

Query: 455 AVLTACCHVGLVELG----QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            VL AC  +  V++G     R+F +  E    +  T     ++      G LA A  +  
Sbjct: 83  FVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNT-----LIYFHANCGDLAVARALFD 137

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELA 537
             S + D+  W AL       G + +A
Sbjct: 138 G-SAKRDVVAWSALTAGYARRGELGVA 163


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 291/512 (56%), Gaps = 46/512 (8%)

Query: 97  GKILHAQLIVSG-LARLTQIATKLITFYTECQ-NIHHARMLFDEIPKTNIHRWIALTGAY 154
           G+I++  ++ +G L     +  +LI  + +   ++  A  +FD++P+ N+  W  +   +
Sbjct: 165 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 224

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A+ G  ++A+ +F +M + G   + F   SVL AC  L  +  G+++HS V++     D 
Sbjct: 225 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 284

Query: 215 FVVSSLIDMYSKC---GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG-LATEALNLVEE 270
            V  SL+DMY+KC   GSV+ ++KVF++M E ++++  A+++ YVQ G    EA+ L  +
Sbjct: 285 CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK 344

Query: 271 IGTPRVKPNVVTW-----------------------------------NTLISGFSKSGD 295
           + +  ++PN  ++                                   N+LIS +++SG 
Sbjct: 345 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGR 404

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                K F ++     E ++VS+ +++ G   N  ++EAF  F E+   G   ++ T +S
Sbjct: 405 MEDARKAFDIL----FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 460

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L   AS   M +G++IHG  +  G + +  + +AL+ MY++CG I  A  +F++M +RN
Sbjct: 461 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRN 520

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
            ++W SMI G A HG+   A+E+F++M E   K + +++ AVL+AC HVG++  GQ+ FN
Sbjct: 521 VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 580

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M +++ I+PR EHYACMVDLLGR+G L EA E I +M    D  VW  LLGAC+ HGN 
Sbjct: 581 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 640

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           EL   AA+ + E EP+  A  +LL++L+A+AG
Sbjct: 641 ELGRHAAEMILEQEPDDPAAYILLSNLHASAG 672



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 250/494 (50%), Gaps = 47/494 (9%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI- 139
           YS  ++  IR R  Q GK++H +L+ SGL   + +   LI+ Y++C +   AR++F+ + 
Sbjct: 47  YSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMG 106

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
            K ++  W A+   +A      +A+  F +M   G   N +   +V++AC + +    GE
Sbjct: 107 NKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGE 166

Query: 200 KIHSLVLKHSF-GTDAFVVSSLIDMYSK-CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
            I+  V+K  +   D  V   LIDM+ K  G +  A KVFD+M E+++V    M++ + Q
Sbjct: 167 IIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQ 226

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG----DQVMVSKLFQLMRAKGV-- 311
            G A +A++L  ++      P+  T+++++S  ++ G     + + S++ +L  A  V  
Sbjct: 227 LGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCV 286

Query: 312 ----------------------------EPDVVSWTSVISGLVHNF-CNDEAFDTFKEML 342
                                       E +V+SWT++I+  V +  C+ EA + F +M+
Sbjct: 287 GCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI 346

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           S    P   + SS+L AC + ++   G++++  A+ +G+     V ++L+ MYA+ G + 
Sbjct: 347 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRME 406

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACC 461
           +AR  FD + E+N V++N+++ G A +   +EA  LFN++ +    +   +F ++L+   
Sbjct: 407 DARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 466

Query: 462 HVGLVELGQRLFN-MMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDL 518
            +G +  G+++   +++  YK    +    C  ++ +  R G +  A+++   M  + ++
Sbjct: 467 SIGAMGKGEQIHGRLLKGGYK----SNQCICNALISMYSRCGNIEAAFQVFNEME-DRNV 521

Query: 519 FVWGALLGACKNHG 532
             W +++     HG
Sbjct: 522 ISWTSMITGFAKHG 535



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 180/378 (47%), Gaps = 45/378 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIAL 150
           L  GK LH+++I  GLA    +   L+  Y +C    ++  +R +F+++P+ N+  W A+
Sbjct: 265 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 324

Query: 151 TGAYARRGY-HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
             AY + G   +EA+ +F +M    ++ N F   SVLKACG+LSD  TGE+++S  +K  
Sbjct: 325 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 384

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             +   V +SLI MY++ G +E A+K FD + EK++V+ NA+V GY +   + EA  L  
Sbjct: 385 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 444

Query: 270 EIGTPRV-----------------------------------KPNVVTWNTLISGFSKSG 294
           EI    +                                   K N    N LIS +S+ G
Sbjct: 445 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 504

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           +     ++F  M  +    +V+SWTS+I+G   +     A + F +ML  G  P   T  
Sbjct: 505 NIEAAFQVFNEMEDR----NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 560

Query: 355 SILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS- 412
           ++L AC+    +  G K  +      G+   +   + +VD+  + G + EA    + M  
Sbjct: 561 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 620

Query: 413 ERNTVTWNSMIFGCANHG 430
             + + W +++  C  HG
Sbjct: 621 MADALVWRTLLGACRVHG 638



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 159/324 (49%), Gaps = 7/324 (2%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G+ +++  +  G+A +  +   LI+ Y     +  AR  FD + + N+  + A+   YA
Sbjct: 372 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 431

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +    +EA  +F+E+   G+  + F   S+L     +  +G GE+IH  +LK  + ++  
Sbjct: 432 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 491

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++LI MYS+CG++E A +VF+EM ++++++  +M++G+ + G AT AL +  ++    
Sbjct: 492 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 551

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            KPN +T+  ++S  S  G      K F  M +  G+ P +  +  ++  L  +    EA
Sbjct: 552 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 611

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV-D 393
            +    M        +    ++L AC    N   G+  H   +++  E D      L+ +
Sbjct: 612 MEFINSM---PLMADALVWRTLLGACRVHGNTELGR--HAAEMILEQEPDDPAAYILLSN 666

Query: 394 MYAKCGFISEARTLFDKMSERNTV 417
           ++A  G   +   +   M ERN +
Sbjct: 667 LHASAGQWKDVVKIRKSMKERNLI 690



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+ +H +L+  G      I   LI+ Y+ C NI  A  +F+E+   N+  W ++  
Sbjct: 470 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 529

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A+ G+   A+ +FH+M   G K N     +VL AC H+  I  G+K  +S+  +H   
Sbjct: 530 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 589

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                 + ++D+  + G + +A +  + M
Sbjct: 590 PRMEHYACMVDLLGRSGLLVEAMEFINSM 618



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 4/195 (2%)

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           AF T   M  Q   P   T S +L +C    N + GK +H   +  G+E D  V + L+ 
Sbjct: 28  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 87

Query: 394 MYAKCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
           +Y+KCG    AR +F+ M ++R+ V+W++M+   AN+    +AI  F  M E     +  
Sbjct: 88  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR-AGRLAEAYEMIK 510
            F AV+ AC +     +G+ ++  + +   +         ++D+  + +G L  AY++  
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 207

Query: 511 TMSTEPDLFVWGALL 525
            M  E +L  W  ++
Sbjct: 208 KMP-ERNLVTWTLMI 221


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 176/516 (34%), Positives = 269/516 (52%), Gaps = 45/516 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHR---- 146
           ++L  G+ +H  ++ SGL     + + LI  Y +C +I +A  +F+ I  K ++ R    
Sbjct: 225 QSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVI 284

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W  +   Y   G   +A+ +F +M + G+K +   + S+   C    DI  G++IH L+ 
Sbjct: 285 WNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIF 344

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K     +  V ++L+DMY KCG +    K+F      +++  +A++S   Q G  T+AL 
Sbjct: 345 KFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALE 404

Query: 267 LVEEI-------------------GTPRVKP----------------NVVTWNTLISGFS 291
           L  E                     +  +KP                +V   + L+  ++
Sbjct: 405 LFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYA 464

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           K  D     K+F  +  K    D+VSW ++ISG   + C DEA   F++M  +   P + 
Sbjct: 465 KCRDMGYSKKVFLRLSQK----DLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTV 520

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           TI+ IL  CA  + M   KE+HG  I  G+   + V ++L+  YAKCG I+ +   F+KM
Sbjct: 521 TIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKM 580

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ 470
            ERN V+WNS+I G   H   DE I LF++M     K DH++FTA+L+AC H G V+ G 
Sbjct: 581 PERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGC 640

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
           + F  M E + + P+ E Y CMVDLLGRAG L +AY++I  M   PD  +WG+LLG+CKN
Sbjct: 641 KYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKN 700

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           HG+  LAEI A H+ +L P S    +LL +LY N G
Sbjct: 701 HGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLG 736



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 208/444 (46%), Gaps = 50/444 (11%)

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIF-VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y   G+  +A+ V+ +M   G+K   F   P ++KA G L D+  G +IH  VLK     
Sbjct: 83  YTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLD 142

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLV 268
           D  VV+SL+ MY KCG VE A ++F++M E D+V+ N M+SG+ +    T +L    ++V
Sbjct: 143 DVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMV 202

Query: 269 EEIGTPRVKPNVVTWNTLISGFS----------------KSG---DQVMVSKLFQLMRAK 309
            E G   + PN V   + I   S                KSG   ++ +VS L ++    
Sbjct: 203 WEFG---IYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKC 259

Query: 310 G-----------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           G                 V  + V W  +ISG V N C  +A   F +M+  G  P  +T
Sbjct: 260 GSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYST 319

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           + S+   C+ + ++  GK+IHG     G++ ++ V +AL+DMY KCG +     +F +  
Sbjct: 320 MVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQ 379

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQR 471
             N + W+++I  CA  G   +A+ELF + +    L D     AVL AC  + L   G +
Sbjct: 380 NHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQ 439

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
           +   +  K   +      + +VDL  +   +  + ++   +S + DL  W AL+     +
Sbjct: 440 IHG-LATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLS-QKDLVSWNALISG---Y 494

Query: 532 GNIELAEIAAKHLSELEPESAANN 555
              E A+ A K   +++ E    N
Sbjct: 495 AQDECADEALKAFRDMQLEEIRPN 518


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 279/520 (53%), Gaps = 54/520 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF-DEIPKTNIHRWIAL 150
           + L  GK +H+ ++++G        T LI  Y++C  ++ A  +F D   + N+  + A+
Sbjct: 51  KNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAI 110

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +   G+ +E    + +M  +G+  + F  P  +KAC  + +I   +KIH L+ K   
Sbjct: 111 ISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGL 167

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D F+ S+L++ Y K G +E A+  F+E+  +D+V  NAMV+GY Q G     L     
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGD------------------QVMVS------------ 300
           +    V P+  T   ++S F+  GD                   V VS            
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 301 -----KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE--AFDTFKEMLSQGFCPTSATI 353
                ++F++MR    E D+ SW S++S  VH  C D          ML  G  P   T+
Sbjct: 288 IEDALEIFEMMR----EKDIFSWNSIVS--VHEQCGDHDGTLRLLDRMLGAGIQPDLVTV 341

Query: 354 SSILPACASAANMRRGKEIHGCAIV--MGVEG----DLHVRSALVDMYAKCGFISEARTL 407
           +++LPAC+  A +  G+EIHG  IV  +G +G    D+ +++A++DMYAKCG + +A  +
Sbjct: 342 TTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 401

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLV 466
           F++MS ++  +WN MI G   HGY +EA+E+F++M E + K D ++F  VL+AC H G V
Sbjct: 402 FERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 461

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
             G+     M+ KY + P  EHY C++D+LGRAG+L EAYE+  TM  E +  VW ALL 
Sbjct: 462 SQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLA 521

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AC+ H +  LAE+AA+ + ELEPE   + +L++++Y   G
Sbjct: 522 ACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVG 561



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 186/401 (46%), Gaps = 44/401 (10%)

Query: 172 IQGLKQ--NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           IQ  +Q  N+    + L+A  H  ++  G++IHS +L + F      ++SLI+MYSKC  
Sbjct: 28  IQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQ 87

Query: 230 VEKAKKVF-DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----- 283
           +  A  +F D   E ++ A NA++SG++  G   E     +++    V P+  T+     
Sbjct: 88  MNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIK 147

Query: 284 -----------NTLISGFSKSGDQVMVSKL------FQLMRAKGVE------PDVVSWTS 320
                      + L+  F    D  + S L      F LM    V        DVV W +
Sbjct: 148 ACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNA 207

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +++G       +   +TF+ M  +   P+  T++ +L   A   ++  G+ IHG A+ MG
Sbjct: 208 MVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMG 267

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF---GCANHGYCDEAIE 437
            +  + V ++L+DMY KC  I +A  +F+ M E++  +WNS++     C +H   D  + 
Sbjct: 268 YDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH---DGTLR 324

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM-----QEKYKIMPRTEHYAC 491
           L ++M     + D ++ T VL AC H+  +  G+ +   M      +  K +        
Sbjct: 325 LLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNA 384

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           ++D+  + G + +A+ + + MS + D+  W  ++     HG
Sbjct: 385 VIDMYAKCGSMRDAHLVFERMSNK-DVASWNIMIMGYGMHG 424


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/508 (32%), Positives = 274/508 (53%), Gaps = 36/508 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL  GK +H  +I  G    T I   +++ Y+    +  AR+ FD     N   W ++ 
Sbjct: 246 RALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSII 305

Query: 152 GAYA-----------------------------------RRGYHQEAVTVFHEMHIQGLK 176
            +YA                                    +G ++  +T F  +   G K
Sbjct: 306 SSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFK 365

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            +   I S L+A   L     G++IH  +++     D +V +SL+D Y K   ++KA+ V
Sbjct: 366 PDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVV 425

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F     K+I A N+++SGY  +GL   A  L+ ++    +KP++VTWN+L+SG+S SG  
Sbjct: 426 FHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRS 485

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +   +++ G+ P+VVSWT++ISG   N    +A   F +M  +   P S TI ++
Sbjct: 486 EEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTL 545

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA ++ ++ G+EIH  ++  G   D+++ +AL+DMY K G +  A  +F  + E+  
Sbjct: 546 LRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTL 605

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
             WN M+ G A +G+ +E   LF++M +   + D ++FTA+L+ C + GLV  G + F+ 
Sbjct: 606 PCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDS 665

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M+  Y I P  EHY+CMVDLLG+AG L EA + I  +  + D  +WGA+L AC+ H +I+
Sbjct: 666 MKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDIK 725

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYA 563
           +AEIAA++L  LEP ++AN  L+ ++Y+
Sbjct: 726 IAEIAARNLLRLEPYNSANYALMMNIYS 753



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 134/555 (24%), Positives = 236/555 (42%), Gaps = 85/555 (15%)

Query: 19  LSMNDFYSIRRIYFALLSGTQLVLSC--SKSASDAGKP-LINGIFIEAHYKMPIISRSFH 75
           L   DF S  +++F   +   L+ +    + AS  G    I  +F E H       +   
Sbjct: 75  LQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELH------DKGVK 128

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
               A +  ++I +    L  G  +HA L+  G      ++  LI  Y +   I  A  +
Sbjct: 129 FDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQV 188

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FDE P      W  +  A  R    ++A+ +F  M     K     I  +L+ACG L  +
Sbjct: 189 FDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRAL 248

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G++IH  V++    ++  + +S++ MYS+   +E A+  FD   + +  + N+++S Y
Sbjct: 249 NEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSY 308

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
                   A +L++E+ +  VKP+++TWN+L+SG    G    V   F+ +++ G +PD 
Sbjct: 309 AVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPD- 367

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
                                             S +I+S L A         GKEIHG 
Sbjct: 368 ----------------------------------SCSITSALQAVIGLGCFNLGKEIHGY 393

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
            +   +E D++V ++LVD Y K   + +A  +F     +N   WNS+I G    G  D A
Sbjct: 394 IMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNA 453

Query: 436 IELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
            +L NQM EE  K D +++ ++++                     Y +  R+E    +++
Sbjct: 454 EKLLNQMKEEGIKPDLVTWNSLVSG--------------------YSMSGRSEEALAVIN 493

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHLSELEPESAA 553
                         IK++   P++  W A++ G C+N   ++    A +  S+++ E+  
Sbjct: 494 -------------RIKSLGLTPNVVSWTAMISGCCQNENYMD----ALQFFSQMQEENVK 536

Query: 554 NN--MLLTDLYANAG 566
            N   + T L A AG
Sbjct: 537 PNSTTICTLLRACAG 551



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 16/237 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H   +  G      IAT LI  Y +   +  A  +F  I +  +  W  +   
Sbjct: 555 LKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMG 614

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFGT 212
           YA  G+ +E  T+F EM   G++ +     ++L  C +   +  G K   S+   ++   
Sbjct: 615 YAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINP 674

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
                S ++D+  K G +++A      + +K     +A + G V           + EI 
Sbjct: 675 TIEHYSCMVDLLGKAGFLDEALDFIHAVPQK----ADASIWGAVLAACRLHKDIKIAEIA 730

Query: 273 TP---RVKP----NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE-PDVVSWTSV 321
                R++P    N      + S F + GD   V +L + M A GV+ P+V SW  V
Sbjct: 731 ARNLLRLEPYNSANYALMMNIYSTFDRWGD---VERLKESMTALGVKIPNVWSWIQV 784


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 273/474 (57%), Gaps = 1/474 (0%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +  GK  HA  ++SGL     + + LI FY++   +  A ++F E+ + +   W  L   
Sbjct: 298 IDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSG 357

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G    A+ + H M  + L+ +   + S++ A     ++  G++ HS  ++++  +D
Sbjct: 358 YVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESD 417

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V SS+IDMY+KC  +E A++VFD   ++D++  N +++ Y ++G + E L L  ++  
Sbjct: 418 VAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQL 477

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             + PNV++WN++I G    G        F  M++ G+ P++++WT++I GL  N   DE
Sbjct: 478 EGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPNLITWTTLICGLAQNGLGDE 537

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           AF TF+ M   G  P S +ISS+L AC++ A++  G+ IH       +     V  +LV+
Sbjct: 538 AFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELSVSTPVLCSLVN 597

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           MYAKCG I++A+ +FD + ++    +N+MI G A HG   EA+ LF ++ EE  K D ++
Sbjct: 598 MYAKCGSINQAKRVFDMILKKELPVYNAMISGYALHGQAVEALSLFRRLKEECIKPDEIT 657

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           FT++L+AC H GLV  G  LF  M   +KI+ + EHY C+V +L R+  L EA  +I  M
Sbjct: 658 FTSILSACGHAGLVREGLELFIDMVSNHKIVAQAEHYGCLVSILSRSHNLDEALRIILGM 717

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             EPD F++G+LL AC+ H + EL E   + L +LEP+++ N + L++ YA  G
Sbjct: 718 PFEPDAFIFGSLLAACREHPDFELKERLFERLLKLEPDNSGNYVALSNAYAATG 771



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/471 (32%), Positives = 245/471 (52%), Gaps = 35/471 (7%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNIHHAR 133
           + P  Y E ++  + +RAL  G+ +H +++ +G  +A+   I TKL+ FY++C     A 
Sbjct: 76  IGPDVYGELLQGCVYERALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKCDESEIAN 135

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
            LF ++   N   W A+ G  +R G++QEA+  F EMH  GL  + FVIP   KA G L 
Sbjct: 136 RLFGKLQVQNEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALR 195

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
            IG G+ +H+ V+K   G   +V +SL+DMY KCG  E+AKKVFD+++EK+IVA N+M+ 
Sbjct: 196 WIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIV 255

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--------KSGDQVMVSKLFQL 305
            + Q GL  EA+    E+    V P  VT ++ +S  +        K G  + V    +L
Sbjct: 256 NFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLEL 315

Query: 306 MRAKG-----------------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
               G                       +E D V+W  ++SG VHN   D A D    M 
Sbjct: 316 TNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQ 375

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           S+     S T++SI+ A A + N++ GKE H   +   +E D+ V S+++DMYAKC  + 
Sbjct: 376 SENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLE 435

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACC 461
            AR +FD  ++R+ + WN+++   A  G+  E ++LF QM+ E    + +S+ +V+    
Sbjct: 436 CARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSVILGLL 495

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           + G V+  +  F  MQ    I P    +  ++  L + G   EA+   ++M
Sbjct: 496 NKGKVDQAKDTFMEMQ-SLGICPNLITWTTLICGLAQNGLGDEAFLTFQSM 545



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 215/446 (48%), Gaps = 11/446 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +  GK +HA ++  GL     +AT L+  Y +C     A+ +FD+I + NI  W ++ 
Sbjct: 195 RWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMI 254

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + + G + EAV  F+EM ++G+      + S L A  +LS I  G++ H+L +     
Sbjct: 255 VNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLE 314

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               + SSLI+ YSK G VE A+ VF EM+EKD V  N +VSGYV  GL   AL+L   +
Sbjct: 315 LTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVM 374

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
            +  ++ + VT  ++++  + S +  +  +         +E DV    +V S ++  +  
Sbjct: 375 QSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDV----AVASSIIDMYAK 430

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            E  +  + +            +++L A A   +     ++     + G+  ++   +++
Sbjct: 431 CEKLECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSV 490

Query: 392 VDMYAKCGFISEARTLFDKMSE----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
           +      G + +A+  F +M       N +TW ++I G A +G  DEA   F  MEE   
Sbjct: 491 ILGLLNKGKVDQAKDTFMEMQSLGICPNLITWTTLICGLAQNGLGDEAFLTFQSMEEAGI 550

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           K + LS +++L+AC  +  +  G R  +    ++++   T     +V++  + G + +A 
Sbjct: 551 KPNSLSISSLLSACSTMASLPHG-RAIHCYITRHELSVSTPVLCSLVNMYAKCGSINQA- 608

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHG 532
           + +  M  + +L V+ A++     HG
Sbjct: 609 KRVFDMILKKELPVYNAMISGYALHG 634



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 198/421 (47%), Gaps = 54/421 (12%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH--SFGTD 213
           ++G+  EA+ +  ++ ++ +     V   +L+ C +   +  G++IH  +LK+  S   +
Sbjct: 55  KQGHLLEALDLVTDLELEDITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGESIAKN 114

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL-------- 265
            ++ + L+  YSKC   E A ++F ++  ++  +  A++    + G   EAL        
Sbjct: 115 EYIETKLVIFYSKCDESEIANRLFGKLQVQNEFSWAAIMGLKSRMGFNQEALMGFREMHE 174

Query: 266 ------NLVEEI-----GTPR-------VKPNVVTW---------NTLISGFSKSGDQVM 298
                 N V  I     G  R       V   VV            +L+  + K G    
Sbjct: 175 YGLLLDNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEE 234

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             K+F     K +E ++V+W S+I     N  N EA +TF EM  +G  PT  T+SS L 
Sbjct: 235 AKKVFD----KILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLS 290

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ + +  GK+ H  A++ G+E    + S+L++ Y+K G + +A  +F +M E++TVT
Sbjct: 291 ASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVT 350

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQR-----L 472
           WN ++ G  ++G  D A++L + M+ E  + D ++  +++ A      ++LG+      +
Sbjct: 351 WNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCV 410

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            N ++    +       + ++D+  +  +L E    +   + + DL +W  LL A    G
Sbjct: 411 RNNLESDVAVA------SSIIDMYAKCEKL-ECARRVFDATAKRDLIMWNTLLAAYAEQG 463

Query: 533 N 533
           +
Sbjct: 464 H 464



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 144/309 (46%), Gaps = 22/309 (7%)

Query: 241 VEKDIVAMNAMVSGYVQRGLATE-ALNLVEEI------GTPRVKPNVVTWNTLISGFSKS 293
           +E + + +   V G + +G   E AL+L ++I          +  N      L+  +SK 
Sbjct: 69  LELEDITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKC 128

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
            +  + ++LF  ++ +    +  SW +++        N EA   F+EM   G    +  I
Sbjct: 129 DESEIANRLFGKLQVQ----NEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVI 184

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
                A  +   +  GK +H   + MG+ G ++V ++L+DMY KCG   EA+ +FDK+ E
Sbjct: 185 PIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILE 244

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           +N V WNSMI     +G   EA+E F +M  E      ++ ++ L+A  ++ +++ G++ 
Sbjct: 245 KNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQG 304

Query: 473 FNMM----QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
             +      E   I+  +     +++   + G L E  E++ +   E D   W  L+   
Sbjct: 305 HALAVLSGLELTNILGSS-----LINFYSKVG-LVEDAELVFSEMLEKDTVTWNLLVSGY 358

Query: 529 KNHGNIELA 537
            ++G ++ A
Sbjct: 359 VHNGLVDRA 367


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 279/520 (53%), Gaps = 54/520 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF-DEIPKTNIHRWIAL 150
           + L  GK +H+ ++++G        T LI  Y++C  ++ A  +F D   + N+  + A+
Sbjct: 51  KNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAI 110

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +   G+ +E    + +M  +G+  + F  P  +KAC  + +I   +KIH L+ K   
Sbjct: 111 ISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGL 167

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D F+ S+L++ Y K G +E A+  F+E+  +D+V  NAMV+GY Q G     L     
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGD------------------QVMVS------------ 300
           +    V P+  T   ++S F+  GD                   V VS            
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 301 -----KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE--AFDTFKEMLSQGFCPTSATI 353
                ++F++MR    E D+ SW S++S  VH  C D          ML  G  P   T+
Sbjct: 288 IEDALEIFEMMR----EKDIFSWNSIVS--VHEQCGDHDGTLRLLDRMLGAGIQPDLVTV 341

Query: 354 SSILPACASAANMRRGKEIHGCAIV--MGVEG----DLHVRSALVDMYAKCGFISEARTL 407
           +++LPAC+  A +  G+EIHG  IV  +G +G    D+ +++A++DMYAKCG + +A  +
Sbjct: 342 TTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 401

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLV 466
           F++MS ++  +WN MI G   HGY +EA+E+F++M E + K D ++F  VL+AC H G V
Sbjct: 402 FERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 461

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
             G+     M+ KY + P  EHY C++D+LGRAG+L EAYE+  TM  E +  VW ALL 
Sbjct: 462 SQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLA 521

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AC+ H +  LAE+AA+ + ELEPE   + +L++++Y   G
Sbjct: 522 ACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVG 561



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 186/401 (46%), Gaps = 44/401 (10%)

Query: 172 IQGLKQ--NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           IQ  +Q  N+    + L+A  H  ++  G++IHS +L + F      ++SLI+MYSKC  
Sbjct: 28  IQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQ 87

Query: 230 VEKAKKVF-DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----- 283
           +  A  +F D   E ++ A NA++SG++  G   E     +++    V P+  T+     
Sbjct: 88  MNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIK 147

Query: 284 -----------NTLISGFSKSGDQVMVSKL------FQLMRAKGVE------PDVVSWTS 320
                      + L+  F    D  + S L      F LM    V        DVV W +
Sbjct: 148 ACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNA 207

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +++G       +   +TF+ M  +   P+  T++ +L   A   ++  G+ IHG A+ MG
Sbjct: 208 MVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMG 267

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF---GCANHGYCDEAIE 437
            +  + V ++L+DMY KC  I +A  +F+ M E++  +WNS++     C +H   D  + 
Sbjct: 268 YDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH---DGTLR 324

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM-----QEKYKIMPRTEHYAC 491
           L ++M     + D ++ T VL AC H+  +  G+ +   M      +  K +        
Sbjct: 325 LLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNA 384

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           ++D+  + G + +A+ + + MS + D+  W  ++     HG
Sbjct: 385 VIDMYAKCGSMRDAHLVFERMSNK-DVASWNIMIMGYGMHG 424


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/511 (33%), Positives = 272/511 (53%), Gaps = 43/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H      G      +A  LI  Y+       AR LFD++P  ++  W A+   
Sbjct: 231 LVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 290

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             + G   +A+ V  EM ++G+K N   + S+L  C  L DI T   IH  V+KH    D
Sbjct: 291 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFD 350

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++LI+MY+K G++E A+K F +M   D+V+ N++++ Y Q      A     ++  
Sbjct: 351 LFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL 410

Query: 274 PRVKPNVVT----------------------------W--------NTLISGFSKSGDQV 297
              +P+++T                            W        N ++  ++K G   
Sbjct: 411 NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSI 356
              K+F+++  K    DV+SW ++I+G   N    EA + +K M   +   P   T  SI
Sbjct: 471 SAHKVFEIILVK----DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSI 526

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPA A    +++G  IHG  I   +  D+ V + L+D+Y KCG + +A +LF ++ + ++
Sbjct: 527 LPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS 586

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           VTWN++I     HG+ ++ ++LF +M +E  K DH++F ++L+AC H G VE G+  F +
Sbjct: 587 VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRL 646

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQE Y I P  +HY CMVDLLGRAG L  AY  IK M  +PD  +WGALLGAC+ HGNIE
Sbjct: 647 MQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIE 705

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L + A+  L E++ ++    +LL+++YAN G
Sbjct: 706 LGKFASDRLFEVDSKNVGYYVLLSNIYANVG 736



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 243/482 (50%), Gaps = 58/482 (12%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA L+V+G  +   I+T+L+  Y    ++  +R  FD+IP+ +++ W ++  AY   
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195

Query: 158 GYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           G+  EA+  F++ + +  ++ + +  P VLKACG L D   G +IH    K  F  + FV
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFV 252

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MYS+ G    A+ +FD+M  +D+ + NAM+SG +Q G A +AL++++E+    +
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
           K N VT                                    N LI+ ++K G+     K
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            FQ M       DVVSW S+I+    N     A   F +M   GF P   T+ S+    A
Sbjct: 373 AFQQMFIT----DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 362 SAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            + + +  + +HG  +  G +  D+ + +A+VDMYAK G +  A  +F+ +  ++ ++WN
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWN 488

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           ++I G A +G   EAIE++  MEE K++  +  ++ ++L A  HVG ++ G R+      
Sbjct: 489 TLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHG---- 544

Query: 479 KYKIMPRTEHY-----ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             +++    H       C++D+ G+ GRL +A  +   +  E  +  W A++     HG+
Sbjct: 545 --RVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV-TWNAIISCHGIHGH 601

Query: 534 IE 535
            E
Sbjct: 602 AE 603



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 15/236 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  +H ++I + L     +AT LI  Y +C  +  A  LF ++P+ +   W A+  
Sbjct: 535 ALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 594

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   G+ ++ + +F EM  +G+K +     S+L AC H   +  G+    L+ ++    
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKP 654

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM-----VSGYVQRG-LATEAL 265
                  ++D+  + G +E A     +M ++ D     A+     + G ++ G  A++ L
Sbjct: 655 SLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRL 714

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
             V+         NV  +  L + ++  G    V K+  L R +G++     W+++
Sbjct: 715 FEVDS-------KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK-KTPGWSTI 762


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 187/508 (36%), Positives = 270/508 (53%), Gaps = 56/508 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLI-TFYTECQNIHHARMLFD--EIP-----KTNIHRWIALT 151
           +H QLIVSGL +    A + + T  +   ++ HA  LF+  E P      T +  ++ + 
Sbjct: 78  IHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNTIMRTYVNVN 137

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G++ E      +M  + +  N +  P ++K C  +  IG GEKIH+ +LK  F 
Sbjct: 138 DPYTALGFYYE------QMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFE 191

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D FV +SLI MYS CG +  A+ +F+     D+V  N+M+ GYV+ G    A  L EE+
Sbjct: 192 LDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEM 251

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL--VHNF 329
                + ++ +WN++I+G+  +GD      LF  M  +    D+VSW  +I G   V N 
Sbjct: 252 P----ERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFR----DIVSWNCMIDGYAQVQNM 303

Query: 330 ---CN--------------------------DEAFDTFKEMLSQGFCPTSATISSILPAC 360
              C                           DE    F +M+ +   P  AT+ S+L AC
Sbjct: 304 EIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTAC 362

Query: 361 ASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           A    + RGK IH       V E D+ + +AL+ MYAKCG +  AR +FDKMS R+ V+W
Sbjct: 363 AHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSW 422

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSMI G   HG  D+A+E+F  ME+R  + +  +F  VL+AC H G++  G   F++M+ 
Sbjct: 423 NSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRR 482

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            YKI P+ EHY CMVDLLGRAG + +  E+I+ M  E    +WGALL AC+ H N ELAE
Sbjct: 483 AYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAE 542

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           I AK L ELEP      +LL+++YA  G
Sbjct: 543 IVAKRLIELEPRDIGPYLLLSNIYAAEG 570



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 143/298 (47%), Gaps = 7/298 (2%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I  Y + QN+  A  LF+ +P  N+  W  +   Y R   + E + +F +M  + +   
Sbjct: 293 MIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNE 352

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
             ++ SVL AC HL  +  G+ IHS +  +     D  + ++L+ MY+KCG+++ A+ VF
Sbjct: 353 ATLV-SVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVF 411

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           D+M  + +V+ N+M+ GY   G A +AL +  ++      PN  T+  ++S  + SG  +
Sbjct: 412 DKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMIL 471

Query: 298 MVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                F LM RA  +EP V  +  ++  L       +  +  ++M  +G    +A   ++
Sbjct: 472 EGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEG---GTALWGAL 528

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           L AC + +N     EI    ++     D+     L ++YA  G   +   +   M ER
Sbjct: 529 LSACRTHSNSELA-EIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKER 585


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 188/589 (31%), Positives = 297/589 (50%), Gaps = 101/589 (17%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L  + +S+ +    R R+ +    +HA +I S  A  T I  +LI  Y +C  +  AR L
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKL 76

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH--------------------------- 168
           FD + + NI  W ++  A+ + G+  +AV +F                            
Sbjct: 77  FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEAL 136

Query: 169 ----EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMY 224
               +MH  G   N +   S L AC  L D+  G +IHSLV + ++ +D ++ S+L+DMY
Sbjct: 137 VYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMY 196

Query: 225 SKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284
           SKCG VE A+ VFDEM  +  V+ N++++ Y Q G   EAL +  E+    V+P+ VT  
Sbjct: 197 SKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLA 256

Query: 285 TLISGFS-----KSGDQV----------------------MVSK---------LFQLMRA 308
           +++S  +     K G Q+                      M +K         +F +M  
Sbjct: 257 SVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316

Query: 309 KGV--EPDVVS-------------------------WTSVISGLVHNFCNDEAFDTFKEM 341
           + V  E  +VS                         W ++I+G   N  N+EA   F+ +
Sbjct: 317 RSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLL 376

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEI------HGCAIVMGVEGDLHVRSALVDMY 395
             +   PT  T  ++L ACA+ A+++ G++       HG     G + D+ V ++L+DMY
Sbjct: 377 KRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMY 436

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
            KCG +     +F  M E++ V+WN+MI G A +G+ ++A+E+F +M E  +  DH++  
Sbjct: 437 MKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMI 496

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL AC H GL++ G+  F  M  ++ +MP  +HY CMVDLLGRAG L EA  +I+ MS 
Sbjct: 497 GVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSM 556

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           +PD  VWG+LL ACK H NI+L E   K L E++PE++   +LL+++YA
Sbjct: 557 QPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYA 605



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQ-------IATKLITFYTECQNIHHARMLFDEIPKTNIHR 146
           LQ G+  H+ ++  G  R          +   LI  Y +C ++ +   +F  + + +   
Sbjct: 401 LQLGRQAHSHVLKHGF-RFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVS 459

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLV 205
           W A+   YA+ G+  +A+ VF +M   G   +   +  VL AC H   +  G     S+ 
Sbjct: 460 WNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMT 519

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRG--LA 261
            +H         + ++D+  + G +E+AK + +EM ++ D +   ++++   V R   L 
Sbjct: 520 AQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLG 579

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--EPDVVSWT 319
              +  + E+      P V+  N     ++++ D   V ++ +LMR +GV  +P   SW 
Sbjct: 580 EYVVKKLLEVDPENSGPYVLLSNM----YAENRDWKNVVRVRKLMRQRGVVKQPG-CSWI 634

Query: 320 SV 321
            +
Sbjct: 635 EI 636


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/504 (32%), Positives = 273/504 (54%), Gaps = 41/504 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H  ++  G    T +   LI  Y +   +  A  LFDE+ + ++  W ++       
Sbjct: 490 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 549

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+    + +F +M I G++ ++  + SVL A  ++ ++  G  +H   +K  F  +    
Sbjct: 550 GFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFS 609

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L+DMYSKCG++  A +VF +M +  IV+  + ++ YV+ GL ++A+ L +E+ +  V+
Sbjct: 610 NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVR 669

Query: 278 PNVVT-----------------------------------WNTLISGFSKSGDQVMVSKL 302
           P++ T                                    N LI+ ++K G       +
Sbjct: 670 PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLV 729

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  +  K    D+VSW ++I G   N   +EA + F +M  Q F P   T++ +LPACA 
Sbjct: 730 FSKIPVK----DIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAG 784

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A + +G+EIHG  +  G   DLHV  ALVDMYAKCG +  A+ LFD + +++ ++W  M
Sbjct: 785 LAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVM 844

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G   HG+ +EAI  FN+M     + D  SF+ +L AC H GL+  G + FN M+ +  
Sbjct: 845 IAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECG 904

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + P+ EHYAC+VDLL R G L++AY+ I++M  +PD  +WG LL  C+ H +++LAE  A
Sbjct: 905 VEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVA 964

Query: 542 KHLSELEPESAANNMLLTDLYANA 565
           +H+ ELEP++    ++L ++YA A
Sbjct: 965 EHIFELEPDNTRYYVVLANVYAEA 988



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 151/528 (28%), Positives = 271/528 (51%), Gaps = 47/528 (8%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S+S+ L   +Y   +++    ++L+ GK +H+ +I +G++    +  KL+  Y  C ++ 
Sbjct: 362 SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLV 421

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
             R +FD+I    +  W  L   YA+ G  +E+V++F +M   G+  N +    VLK   
Sbjct: 422 QGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFA 481

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            L  +   +++H  VLK  FG++  VV+SLI  Y K G VE A  +FDE+ E D+V+ N+
Sbjct: 482 ALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNS 541

Query: 251 MVSGYVQRGLATEALN-------LVEEIGTPRVKPNVVTW-------------------- 283
           M++G V  G +   L        L  E+    +   +V W                    
Sbjct: 542 MINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKAC 601

Query: 284 --------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                   NTL+  +SK G+    +++F  M     +  +VSWTS I+  V      +A 
Sbjct: 602 FSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG----DTTIVSWTSTIAAYVREGLYSDAI 657

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F EM S+G  P   T++SI+ ACA ++++ +G+++H   I  G+  +L V +AL++MY
Sbjct: 658 GLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMY 717

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455
           AKCG + EAR +F K+  ++ V+WN+MI G + +   +EA+ELF  M+++ K D ++   
Sbjct: 718 AKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMAC 777

Query: 456 VLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEMIKTMS 513
           VL AC  +  ++ G+ +  ++++  Y       H AC +VD+  + G L  A +++  M 
Sbjct: 778 VLPACAGLAALDKGREIHGHILRRGYF---SDLHVACALVDMYAKCGLLVLA-QLLFDMI 833

Query: 514 TEPDLFVWGALLGACKNH--GNIELAEIAAKHLSELEPESAANNMLLT 559
            + DL  W  ++     H  GN  ++      ++ +EP+ ++ +++L 
Sbjct: 834 PKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILN 881



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 186/374 (49%), Gaps = 44/374 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ LH   + +  +     +  L+  Y++C N++ A  +F ++  T I  W +   A
Sbjct: 587 LSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAA 646

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y R G + +A+ +F EM  +G++ +I+ + S++ AC   S +  G  +HS V+K+  G++
Sbjct: 647 YVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSN 706

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++LI+MY+KCGSVE+A+ VF ++  KDIV+ N M+ GY Q  L  EAL L  ++  
Sbjct: 707 LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-Q 765

Query: 274 PRVKPNVVTWN-----------------------------------TLISGFSKSGDQVM 298
            + KP+ +T                                      L+  ++K G  V+
Sbjct: 766 KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVL 825

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              LF ++  K    D++SWT +I+G  +H F N EA  TF EM   G  P  ++ S IL
Sbjct: 826 AQLLFDMIPKK----DLISWTVMIAGYGMHGFGN-EAISTFNEMRIAGIEPDESSFSVIL 880

Query: 358 PACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
            AC+ +  +  G K  +      GVE  L   + +VD+ A+ G +S+A    + M  + +
Sbjct: 881 NACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD 940

Query: 416 TVTWNSMIFGCANH 429
           T  W  ++ GC  H
Sbjct: 941 TTIWGVLLSGCRIH 954



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 161/324 (49%), Gaps = 8/324 (2%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            +L  G+ +H+ +I +G+     +   LI  Y +C ++  AR++F +IP  +I  W  + G
Sbjct: 687  SLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 746

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             Y++     EA+ +F +M  Q  K +   +  VL AC  L+ +  G +IH  +L+  + +
Sbjct: 747  GYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS 805

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            D  V  +L+DMY+KCG +  A+ +FD + +KD+++   M++GY   G   EA++   E+ 
Sbjct: 806  DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 865

Query: 273  TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
               ++P+  +++ +++  S SG      K F  MR + GVEP +  +  V+  L      
Sbjct: 866  IAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNL 925

Query: 332  DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD-LHVRSA 390
             +A+   + M  +   P +     +L  C    +++  +++     +  +E D       
Sbjct: 926  SKAYKFIESMPIK---PDTTIWGVLLSGCRIHHDVKLAEKV--AEHIFELEPDNTRYYVV 980

Query: 391  LVDMYAKCGFISEARTLFDKMSER 414
            L ++YA+     E + L  +M +R
Sbjct: 981  LANVYAEAEKWEEVKKLRKRMQKR 1004


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/535 (32%), Positives = 285/535 (53%), Gaps = 36/535 (6%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           M + S  +++    ++  +        L+ G   H+ +I   L +   +   L+  Y +C
Sbjct: 417 MDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKC 476

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
             +  AR +F+ +   +   W  + G Y +     EA  +F  M+  G+  +   + S L
Sbjct: 477 GALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTL 536

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
           KAC ++  +  G+++H L +K          SSLIDMYSKCG +E A+KVF  M E  +V
Sbjct: 537 KACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVV 596

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS------------------ 288
           +MNA+++GY Q  L  EA+ L +E+ T  V P+ +T+ T++                   
Sbjct: 597 SMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQI 655

Query: 289 ---GFSKSGDQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDE 333
              GFS  G+ + +S L   M ++ +               +V WT ++SG   N   +E
Sbjct: 656 IKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEE 715

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   +KEM   G  P  AT  ++L  C+  +++R G+ IH     +  + D    + L+D
Sbjct: 716 ALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLID 775

Query: 394 MYAKCGFISEARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
           MYAKCG +  +  +FD+M  R N V+WNS+I G A +GY ++A+++F+ M +   + D +
Sbjct: 776 MYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEI 835

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  VLTAC H G V  G+++F MM  +Y I  R +H ACMVDLLGR G L EA + I+ 
Sbjct: 836 TFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEA 895

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            + +PD  +W +LLGAC+ HG+    EIAA+ L ELEP++++  +LL+++YA+ G
Sbjct: 896 QNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQG 950



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 222/436 (50%), Gaps = 8/436 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H++ ++ G+    ++   ++  Y +C  + +A   F+ + K ++  W ++  
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLEK-DVTAWNSMLS 133

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y+  G   + +  F  +    +  N F    VL      +++  G +IH  ++K     
Sbjct: 134 MYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLER 193

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +++   +L+DMY+KC  +  A++VFD +V+ + V    + SGYV+ GL  EA+ + E + 
Sbjct: 194 NSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMR 253

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               +P+ + + T+I+ +   G       LF  M +    PDVV+W  +ISG     C  
Sbjct: 254 GEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPS----PDVVAWNVMISGHGKRGCEI 309

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            A + F  M       T +T+ S+L A    AN+  G  +H  AI +G+  +++V S+LV
Sbjct: 310 VAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLV 369

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
            MY+KC  +  A  +F+ + ERN V WN+MI G A++G   + +ELF  M+     +D  
Sbjct: 370 SMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDF 429

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +FT++L+ C     +E+G +  +++ +K K+         +VD+  + G L +A ++ + 
Sbjct: 430 TFTSLLSTCAVSHDLEMGSQFHSIIIKK-KLTKNLFVGNALVDMYAKCGALEDARQIFEH 488

Query: 512 MSTEPDLFVWGALLGA 527
           M  + D   W  ++G 
Sbjct: 489 M-CDRDNVSWNTIIGG 503



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 201/459 (43%), Gaps = 76/459 (16%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R+  ++ G+ +H  +I  GL R +     L+  Y +C  +  A+ +FD I   N   W  
Sbjct: 172 RETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTC 231

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   Y + G  +EAV VF  M  +G + +            HL                 
Sbjct: 232 LFSGYVKAGLPEEAVIVFERMRGEGHRPD------------HL----------------- 262

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
               AFV  ++I+ Y   G ++ A+ +F EM   D+VA N M+SG+ +RG    A+    
Sbjct: 263 ----AFV--TVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFL 316

Query: 270 EIGTPRVKP-----------------------------------NVVTWNTLISGFSKSG 294
            +    VK                                    N+   ++L+S +SK  
Sbjct: 317 NMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCE 376

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                +K+F+ +     E + V W ++I G  HN  + +  + F +M S G+     T +
Sbjct: 377 KMEAAAKVFEALE----ERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFT 432

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L  CA + ++  G + H   I   +  +L V +ALVDMYAKCG + +AR +F+ M +R
Sbjct: 433 SLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDR 492

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           + V+WN++I G        EA +LF +M     + D     + L AC +V  +  G+++ 
Sbjct: 493 DNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQV- 551

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           + +  K  +       + ++D+  + G + +A ++  +M
Sbjct: 552 HCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSM 590



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 136/311 (43%), Gaps = 29/311 (9%)

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGF 290
           K++KVFDEM  +  +A+          G A  + +L+  I +  R+       N ++  +
Sbjct: 60  KSRKVFDEMPHRLALALRI--------GKAVHSKSLILGIDSEGRLG------NAIVDLY 105

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +K        K F       +E DV +W S++S         +   +F  +      P  
Sbjct: 106 AKCAQVSYAEKQFN-----SLEKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNK 160

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
            T S +L   A   N+  G++IH   I MG+E + +   ALVDMYAKC  + +A+ +FD 
Sbjct: 161 FTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDG 220

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELG 469
           + + NTV W  +  G    G  +EA+ +F +M  E  + DHL+F  V+     +G ++  
Sbjct: 221 IVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDA 280

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM---STEPDLFVWGALLG 526
           + LF  M       P    +  M+   G+ G    A E    M   S +      G++L 
Sbjct: 281 RLLFGEMPS-----PDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLS 335

Query: 527 ACKNHGNIELA 537
           A     N++L 
Sbjct: 336 AIGIVANLDLG 346



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
           A  +R GK +H  ++++G++ +  + +A+VD+YAKC  +S A   F+ + E++   WNSM
Sbjct: 73  ALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSM 131

Query: 423 IFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           +   ++ G   + +  F  + E     +  +F+ VL+       VE G+++   M  K  
Sbjct: 132 LSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMI-KMG 190

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           +   +     +VD+  +  RL +A  +   +  +P+   W  L       G  E A I
Sbjct: 191 LERNSYCGGALVDMYAKCDRLGDAQRVFDGI-VDPNTVCWTCLFSGYVKAGLPEEAVI 247


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/522 (33%), Positives = 285/522 (54%), Gaps = 41/522 (7%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y+  I      ++L + K LH  ++ SG +  +    KLI  Y +C  I  AR LFDE+P
Sbjct: 4   YTSLIAQCTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +I  W ++  ++  RG  +EA+ ++  M  +G+  + +   ++ KA   +     G+K
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 201 IHSLVLKHSFG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
            H L +   F  +D FV + ++DMY+K G ++ A+ VFD +++KD+V   A++ GY Q G
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHG 182

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV---- 315
           L  EAL + E++   R+KPN  T  +++      GD V    +  L+   G+E  V    
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQT 242

Query: 316 ---------------------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
                                      V+WTS I GLV N   + A   F+EM+     P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISP 302

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              T+SSIL AC+S A +  G++IH   + +GV+G+  V +AL+ +Y KCG + +AR++F
Sbjct: 303 NHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVF 362

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL----DHLSFTAVLTACCHVG 464
           D ++E + V+ N+MI+  A +G+  EA+ELF ++   KKL    + ++F ++L AC + G
Sbjct: 363 DSLTELDIVSINTMIYAYAQNGFGHEALELFERL---KKLGLEPNVVTFISILLACNNAG 419

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           LVE G ++F++++  + I    +HY CM+DLLGRA R  EA  +I+     PD+  W  L
Sbjct: 420 LVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEE-GKNPDVIQWRTL 478

Query: 525 LGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L ACK HG +E+AE   K + +  P     ++LLT++YA+AG
Sbjct: 479 LNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAG 520


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/500 (33%), Positives = 275/500 (55%), Gaps = 35/500 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+L+V GL     + TKLI   +   +I  AR +FD++P+  +  W A+   Y+R  +
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNH 99

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            Q+A+ ++ +M +  +  + F  P +LKACG LS +  G  +H+ V +  F  D FV + 
Sbjct: 100 FQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNG 159

Query: 220 LIDMYSKCGSVEKAKKVFD--EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           LI +Y+KC  +  A+ VF+   + E+ IV+  A+VS Y Q G   EAL +  ++    VK
Sbjct: 160 LIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVK 219

Query: 278 PNVVTWNTLISGFSKSGD--------------------------QVMVSKLFQLMRAKGV 311
           P+ V   ++++ F+   D                            M +K  Q+  AK +
Sbjct: 220 PDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKIL 279

Query: 312 -----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                 P+++ W ++ISG   N    +A D F EM+++   P + +I+S + ACA   ++
Sbjct: 280 FDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSL 339

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
            + + +           D+ + SAL+DM+AKCG +  AR++FD+  +R+ V W++MI G 
Sbjct: 340 EQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGY 399

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
             HG   EAI L+  ME      + ++F  +L AC H G+V  G   FN M + +KI P+
Sbjct: 400 GLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQ 458

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
            +HYAC++DLLGRAG L +AYE+IK M  +P + VWGALL ACK H ++EL + AA+ L 
Sbjct: 459 QQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLF 518

Query: 546 ELEPESAANNMLLTDLYANA 565
            ++P +  + + L++LYA A
Sbjct: 519 SIDPSNTGHYVQLSNLYAAA 538



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 169/370 (45%), Gaps = 34/370 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--EIPKTNIHRWIALT 151
           LQ G+ +HAQ+   G      +   LI  Y +C+ +  AR +F+   +P+  I  W A+ 
Sbjct: 135 LQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIV 194

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYA+ G   EA+ +F +M    +K +   + SVL A   L D+  G  IH+ V+K    
Sbjct: 195 SAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLE 254

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           T+  ++ SL  MY+KCG V  AK +FD+M   +++  NAM+SGY + G A +A++L  E+
Sbjct: 255 TEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEM 314

Query: 272 GTPRVKPNVVTWNTLISGFSKSG------------------DQVMVSKLFQLMRAK---- 309
               V+P+ ++  + IS  ++ G                  D V +S     M AK    
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSV 374

Query: 310 ---------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                     ++ DVV W+++I G   +    EA   ++ M   G  P   T   +L AC
Sbjct: 375 ECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIAC 434

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT-W 419
             +  +R G           +       + ++D+  + G + +A  +   M  +  VT W
Sbjct: 435 NHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

Query: 420 NSMIFGCANH 429
            +++  C  H
Sbjct: 495 GALLSACKKH 504



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 3/277 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +HA ++  GL     +   L T Y +C  +  A++LFD++   N+  W A+   
Sbjct: 238 LEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G+ ++A+ +FHEM  + ++ +   I S + AC  +  +     +   V +  +  D
Sbjct: 298 YAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDD 357

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F+ S+LIDM++KCGSVE A+ VFD  +++D+V  +AM+ GY   G A EA++L   +  
Sbjct: 358 VFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMER 417

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             V PN VT+  L+   + SG        F  M    + P    +  +I  L      D+
Sbjct: 418 DGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQ 477

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           A++  K M  Q   P      ++L AC    ++  GK
Sbjct: 478 AYEVIKCMPVQ---PGVTVWGALLSACKKHRHVELGK 511



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 171/369 (46%), Gaps = 36/369 (9%)

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
            +IH+ +L        F+++ LI   S  G +  A++VFD++    +   NA++ GY + 
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISG--------------------------FSK 292
               +AL +  ++   RV P+  T+  L+                            F +
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQ 157

Query: 293 SGDQVMVSKLFQLMRAKGV-------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           +G   + +K  +L  A+ V       E  +VSWT+++S    N    EA + F +M    
Sbjct: 158 NGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMD 217

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P    + S+L A     ++ +G+ IH   + MG+E +  +  +L  MYAKCG ++ A+
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAK 277

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVG 464
            LFDKM   N + WN+MI G A +G+  +AI+LF++M  +  + D +S T+ ++AC  VG
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVG 337

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
            +E   R  +    +          + ++D+  + G + E    +   + + D+ VW A+
Sbjct: 338 SLEQA-RWMDEYVSRSDYRDDVFISSALIDMFAKCGSV-ECARSVFDRTLDRDVVVWSAM 395

Query: 525 LGACKNHGN 533
           +     HG 
Sbjct: 396 IVGYGLHGQ 404



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +S++ +    A +R   +IH   +V+G++    + + L+   +  G I+ AR +FD +  
Sbjct: 25  ASLIDSSTHKAQLR---QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPR 81

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQ 470
                WN++I G + + +  +A+ ++++M+  R   D  +F  +L AC  +  +++G+
Sbjct: 82  PQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGR 139


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/452 (36%), Positives = 249/452 (55%), Gaps = 41/452 (9%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T ++  Y E   +  AR +FDE+P+ N   W A+   Y + GY +E++ +F  M  +G K
Sbjct: 254 TAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFK 313

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            NI    S+L A   +  +  G  IH  V K  F  D FV SSLIDMY KCG  +  + +
Sbjct: 314 PNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFL 373

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FD ++EK                                   N+V+WN ++ G+S +G  
Sbjct: 374 FDTILEK-----------------------------------NMVSWNAMVGGYSLNGHM 398

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                LF +M  +    + VSW+++I+G +     DE F+ F EM+  G  P  +T SS+
Sbjct: 399 EEAKYLFNIMPVR----NNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSL 454

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACAS A++ +GK +HG  + +G++ D +V +AL DMYAK G I  ++ +F++M ++N 
Sbjct: 455 LCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNE 514

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFN 474
           V+W +MI G A  G  +E++ LF +ME+   +  + + F AVL AC H GLV+ G   FN
Sbjct: 515 VSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFN 574

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M+  Y + P+  H+ C+VD+L RAGRL EA E I +M  +P+   W ALL  CK + N 
Sbjct: 575 SMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNE 634

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ELAE  A  L E+  ++ A  +LL+++YA+AG
Sbjct: 635 ELAERVAGKLWEMAEKNCAGYVLLSNIYASAG 666



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 230/506 (45%), Gaps = 80/506 (15%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +Q G +  A+ +   + +  +I+ T LI+ + +   +  +   F+  P  N+  W A   
Sbjct: 98  VQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAIS 157

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G+  EA+ +F ++    +K N     SV++AC +L D G G  +  L++K  +  
Sbjct: 158 GYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEH 217

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V +SLI +  + G +  A++VFD M EKD+V+  A++  YV+     EA  + +E+ 
Sbjct: 218 DLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMP 277

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + N V+W+ +I+ + +SG      +LF  M  +G +P++                 
Sbjct: 278 ----QRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNI----------------- 316

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
                             +  SSIL A AS   ++ G  IHG    +G E D+ V S+L+
Sbjct: 317 ------------------SCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLI 358

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD--- 449
           DMY KCG   + R LFD + E+N V+WN+M+ G + +G+ +EA  LFN M  R  +    
Sbjct: 359 DMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSA 418

Query: 450 ----HL-------------------------SFTAVLTACCHVGLVELGQRLFNMMQEKY 480
               HL                         +F+++L AC     ++ G+ L   +  K 
Sbjct: 419 IIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIV-KL 477

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I   T     + D+  ++G +  + ++   M  + ++  W A++      G   LAE +
Sbjct: 478 GIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEV-SWTAMIQGLAESG---LAEES 533

Query: 541 AKHLSELEPESA-ANN--MLLTDLYA 563
                E+E  S+ A N  M L  L+A
Sbjct: 534 LTLFEEMEKTSSIAPNEVMFLAVLFA 559



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 180/392 (45%), Gaps = 42/392 (10%)

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           K  +   +A+  A   + Y Q  V++   +  QGL                   I  G  
Sbjct: 2   KNTLKTLLAINPATHFKTYAQTCVSLLKNLTNQGL-------------------IRDGSA 42

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMY---SKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           +H+ + K    ++ ++   L+ MY    K    ++  K FD     D+V  N M+S  VQ
Sbjct: 43  LHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGF---DLVVHNCMISANVQ 99

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
           RG   EA  L +E+  P+   N ++W  LISGF K G        F+    +    +VVS
Sbjct: 100 RGNLDEARKLFDEM--PQT--NEISWTALISGFMKYGRVRESMWYFE----RNPFQNVVS 151

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WT+ ISG V N  + EA   F ++L     P   T +S++ ACA+  +   G  + G  +
Sbjct: 152 WTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIV 211

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
             G E DL V ++L+ +  + G I  AR +FD+M E++ V+W +++          EA  
Sbjct: 212 KTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARR 271

Query: 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMVDLL 496
           +F++M +R   + +S++A++   C  G  E   RLF  M+QE +K  P    ++ ++  L
Sbjct: 272 IFDEMPQR---NEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFK--PNISCFSSILSAL 326

Query: 497 GRAGRLAEAYEM---IKTMSTEPDLFVWGALL 525
                L     +   +  +  E D+FV  +L+
Sbjct: 327 ASVEALQAGMNIHGHVTKIGFEKDVFVSSSLI 358



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 152/342 (44%), Gaps = 42/342 (12%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           +I   F  + + +S  +       ALQ+G  +H  +   G  +   +++ LI  Y +C  
Sbjct: 307 MIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGE 366

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA------------------------- 163
               R LFD I + N+  W A+ G Y+  G+ +EA                         
Sbjct: 367 TKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDC 426

Query: 164 ------VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
                   VF+EM + G   N     S+L AC   + +  G+ +H  ++K     D +V 
Sbjct: 427 EQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVG 486

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-GTPRV 276
           ++L DMY+K G +E +KKVF+ M +K+ V+  AM+ G  + GLA E+L L EE+  T  +
Sbjct: 487 TALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSI 546

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSK---LFQLMRA-KGVEPDVVSWTSVISGLVHNFCND 332
            PN V +  ++   S SG   +V K    F  M A  G++P    +T V+  L       
Sbjct: 547 APNEVMFLAVLFACSHSG---LVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSR---AG 600

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
             F+  + + S  F P +   +++L  C +  N    + + G
Sbjct: 601 RLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAG 642



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 12/183 (6%)

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           DL V + ++    + G + EAR LFD+M + N ++W ++I G   +G   E++  F    
Sbjct: 86  DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYF---- 141

Query: 444 ERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL---LGRA 499
           ER    + +S+TA ++     G      +LF  + E  ++ P    +  +V     LG  
Sbjct: 142 ERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLES-EVKPNKVTFTSVVRACANLGDF 200

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G       +I     E DL V  +L+  C   G I LA    +    +E +   +   + 
Sbjct: 201 GLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAR---EVFDRMEEKDVVSWTAIL 257

Query: 560 DLY 562
           DLY
Sbjct: 258 DLY 260



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 11/195 (5%)

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
           F   + T  S+L    +   +R G  +H      G+  + ++   L+ MY      +EA 
Sbjct: 17  FKTYAQTCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEAD 76

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL 465
            +       + V  N MI      G  DEA +LF++M +    + +S+TA+++     G 
Sbjct: 77  QISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQ---TNEISWTALIS-----GF 128

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM-IKTMSTE--PDLFVWG 522
           ++ G+   +M   +         +   +    + G   EA ++ IK + +E  P+   + 
Sbjct: 129 MKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFT 188

Query: 523 ALLGACKNHGNIELA 537
           +++ AC N G+  L 
Sbjct: 189 SVVRACANLGDFGLG 203


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/502 (33%), Positives = 264/502 (52%), Gaps = 32/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G++LH   + +GL     + + L+  YT+   I   R +F E+P  N+  W A+     R
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR 194

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            GY++EA+  F EM    ++ + +     LKAC     +  G +IH+  +K  F   +FV
Sbjct: 195 AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFV 254

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L  MY+KCG +E    +F++M  +D+V+   +++  VQ G    A+     +    V
Sbjct: 255 ANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDV 314

Query: 277 KPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRAKG 310
            PN  T+  +ISG +     + G+Q+                     M +K  QL  +  
Sbjct: 315 SPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSV 374

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           +       D+VSW+++I+G        EAF+    M  +G  PT   ++S+L AC + A 
Sbjct: 375 IFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAI 434

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GK++H   + +G+E    V SAL++MY KCG I EA  +FD     + V+W +MI G
Sbjct: 435 LEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMING 494

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HGY  E I+LF ++     + D ++F  VL+AC H GLV+LG   FN M +KY+I P
Sbjct: 495 YAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISP 554

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             EHY CM+DLL RAGRL++A  MI+ M    D  VW  LL AC+ HG++E     A+ +
Sbjct: 555 SKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERI 614

Query: 545 SELEPESAANNMLLTDLYANAG 566
            +LEP  A  ++ L ++YA+ G
Sbjct: 615 LQLEPNCAGTHITLANIYASKG 636



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 216/446 (48%), Gaps = 51/446 (11%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVL 186
           ++ +AR +FD++ + +   W  L   Y       EA+ +F  M ++ GL+ + F++    
Sbjct: 64  HLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAH 123

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
           KACG  SD+  GE +H   +K       FV S+L+DMY+K G + + ++VF EM  +++V
Sbjct: 124 KACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVV 183

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------------------- 283
           +  A+++G V+ G   EAL    E+   RV+ +  T+                       
Sbjct: 184 SWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQA 243

Query: 284 ------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                       NTL + ++K G       LF+ M  +    DVVSWT++I+ LV     
Sbjct: 244 MKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR----DVVSWTTIITTLVQMGQE 299

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           + A   F  M      P   T ++++  CA+ A +  G+++H   + +G+   L V +++
Sbjct: 300 ECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSI 359

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDH 450
           + MYAKCG ++ +  +F +M+ R+ V+W+++I G    G+  EA EL + M  E  K   
Sbjct: 360 MTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTE 419

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA----CMVDLLGRAGRLAEAY 506
            +  +VL+AC ++ ++E G++L       Y +    EH A     ++++  + G + EA 
Sbjct: 420 FALASVLSACGNMAILEHGKQL-----HAYVLSIGLEHTAMVLSALINMYCKCGSIEEAS 474

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHG 532
            +      + D+  W A++     HG
Sbjct: 475 RIFDAAEND-DIVSWTAMINGYAEHG 499



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 70/338 (20%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G+ LHA ++  GLA    +   ++T Y +C  +  + ++F E+ + +I  W  +   
Sbjct: 334 IEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAG 393

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G+  EA  +   M ++G K   F + SVL ACG+++ +  G+++H+ VL       
Sbjct: 394 YXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHT 453

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           A V+S+LI+MY KCGS+E+A ++FD     DIV+  AM++GY + G + E ++L E+I  
Sbjct: 454 AMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKI-- 511

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
           PRV                                 G+ PD V++  V+S   H    D 
Sbjct: 512 PRV---------------------------------GLRPDSVTFIGVLSACSHAGLVDL 538

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
            F  F  M  +           I P+          KE +GC               ++D
Sbjct: 539 GFHYFNAMSKK---------YQISPS----------KEHYGC---------------MID 564

Query: 394 MYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
           +  + G +S+A  + + M   R+ V W++++  C  HG
Sbjct: 565 LLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 602



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 172/376 (45%), Gaps = 66/376 (17%)

Query: 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP---RVKPNV-- 280
           K G +  A+++FD+M +KD ++   ++SGYV    ++EAL L + +      R+ P +  
Sbjct: 61  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120

Query: 281 -----------VTWNTLISGFS-KSG--DQVMV-----------SKLFQLMRAKGVEP-- 313
                      V +  L+ G++ K+G  + V V            K+F+  R     P  
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           +VVSWT++I+GLV    N EA   F EM        S T +  L ACA +  +  G+EIH
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
             A+  G +    V + L  MY KCG +    TLF+KMS R+ V+W ++I      G  +
Sbjct: 241 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 300

Query: 434 EAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM----------------- 475
            A++ F +M E     +  +F AV++ C ++  +E G++L  +                 
Sbjct: 301 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 360

Query: 476 -MQEK----------YKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLF 519
            M  K          +  M R +   ++ ++    + G ++EA+E++  M  E   P  F
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEF 420

Query: 520 VWGALLGACKNHGNIE 535
              ++L AC N   +E
Sbjct: 421 ALASVLSACGNMAILE 436


>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g19720; AltName: Full=Protein DYW7
 gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
 gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 894

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/423 (36%), Positives = 247/423 (58%), Gaps = 2/423 (0%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           ++  W A+       G   +A+ +F +M + G+  N   I S + AC  L  I  G ++H
Sbjct: 316 DVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVH 375

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
           S+ +K  F  D  V +SL+DMYSKCG +E A+KVFD +  KD+   N+M++GY Q G   
Sbjct: 376 SIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCG 435

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSV 321
           +A  L   +    ++PN++TWNT+ISG+ K+GD+     LFQ M   G V+ +  +W  +
Sbjct: 436 KAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLI 495

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+G + N   DEA + F++M    F P S TI S+LPACA+    +  +EIHGC +   +
Sbjct: 496 IAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNL 555

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           +    V++AL D YAK G I  +RT+F  M  ++ +TWNS+I G   HG    A+ LFNQ
Sbjct: 556 DAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQ 615

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M+ +    +  + ++++ A   +G V+ G+++F  +   Y I+P  EH + MV L GRA 
Sbjct: 616 MKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRAN 675

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           RL EA + I+ M+ + +  +W + L  C+ HG+I++A  AA++L  LEPE+ A   +++ 
Sbjct: 676 RLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQ 735

Query: 561 LYA 563
           +YA
Sbjct: 736 IYA 738



 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 167/519 (32%), Positives = 275/519 (52%), Gaps = 13/519 (2%)

Query: 57  NGIFIEAHYKM-PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG  +EA   +  +  +   +  + Y + +E  I   ++  G+ILHA+    GL     +
Sbjct: 59  NGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARF---GLFTEPDV 115

Query: 116 --ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
              TKL++ Y +C  I  AR +FD + + N+  W A+ GAY+R    +E   +F  M   
Sbjct: 116 FVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKD 175

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G+  + F+ P +L+ C +  D+  G+ IHS+V+K    +   V +S++ +Y+KCG ++ A
Sbjct: 176 GVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFA 235

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
            K F  M E+D++A N+++  Y Q G   EA+ LV+E+    + P +VTWN LI G+++ 
Sbjct: 236 TKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQL 295

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G       L Q M   G+  DV +WT++ISGL+HN    +A D F++M   G  P + TI
Sbjct: 296 GKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTI 355

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S + AC+    + +G E+H  A+ MG   D+ V ++LVDMY+KCG + +AR +FD +  
Sbjct: 356 MSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKN 415

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           ++  TWNSMI G    GYC +A ELF +M++   + + +++  +++     G       L
Sbjct: 416 KDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDL 475

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACK 529
           F  M++  K+   T  +  ++    + G+  EA E+ + M      P+     +LL AC 
Sbjct: 476 FQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACA 535

Query: 530 N-HGNIELAEIAAKHLSE-LEPESAANNMLLTDLYANAG 566
           N  G   + EI    L   L+   A  N  LTD YA +G
Sbjct: 536 NLLGAKMVREIHGCVLRRNLDAIHAVKNA-LTDTYAKSG 573



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%)

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           RM  D   + N   W  +   Y + G   EA+ +F +M       N   I S+L AC +L
Sbjct: 478 RMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANL 537

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
                  +IH  VL+ +      V ++L D Y+K G +E ++ +F  M  KDI+  N+++
Sbjct: 538 LGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLI 597

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
            GYV  G    AL L  ++ T  + PN  T +++I
Sbjct: 598 GGYVLHGSYGPALALFNQMKTQGITPNRGTLSSII 632



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  ++   L  +  +   L   Y +  +I ++R +F  +   +I  W +L G Y   G 
Sbjct: 546 IHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGS 605

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV-- 217
           +  A+ +F++M  QG+  N   + S++ A G + ++  G+K+      +S   D  ++  
Sbjct: 606 YGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVF-----YSIANDYHIIPA 660

Query: 218 ----SSLIDMYSKCGSVEKAKKVFDEM 240
               S+++ +Y +   +E+A +   EM
Sbjct: 661 LEHCSAMVYLYGRANRLEEALQFIQEM 687


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/504 (33%), Positives = 270/504 (53%), Gaps = 41/504 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H  ++  G      +   LI  Y +C  +  AR+LFDE+   ++  W ++       
Sbjct: 178 KRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMN 237

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+ +  +  F +M   G+  +   + +VL AC ++ ++  G  +H+  +K  F       
Sbjct: 238 GFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFN 297

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L+DMYSKCG++  A +VF +M E  IV+  ++++ +V+ GL  EA+ L +E+ +  ++
Sbjct: 298 NTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLR 357

Query: 278 P-----------------------------------NVVTWNTLISGFSKSGDQVMVSKL 302
           P                                   N+   N L++ ++K G     + +
Sbjct: 358 PDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLI 417

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  +  K    ++VSW ++I G   N   +EA   F +M  Q   P   T++ +LPACA 
Sbjct: 418 FSQLPVK----NIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAG 472

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A + +G+EIHG  +  G   DLHV  ALVDMY KCG +  A+ LFD + +++ + W  M
Sbjct: 473 LAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVM 532

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G   HG+  EAI  F +M     + +  SFT++L AC H GL++ G +LF+ M+ +  
Sbjct: 533 IAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECN 592

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P+ EHYACMVDLL R+G L+ AY+ I+TM  +PD  +WGALL  C+ H ++ELAE  A
Sbjct: 593 IEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVA 652

Query: 542 KHLSELEPESAANNMLLTDLYANA 565
           +H+ ELEPE+    +LL ++YA A
Sbjct: 653 EHIFELEPENTRYYVLLANVYAEA 676



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 263/527 (49%), Gaps = 47/527 (8%)

Query: 67  MPIISRS--FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
           M ++SRS    L    Y   +++    ++L+ GK +H+ +  +G+A    +  KL+  Y 
Sbjct: 44  MKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYV 103

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
            C ++   R +FD I    I  W  L   YA+ G ++E+V +F +M   G++ + +    
Sbjct: 104 NCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTC 163

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VLK     + +   +++H  VLK  FG+   VV+SLI  Y KCG VE A+ +FDE+ ++D
Sbjct: 164 VLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRD 223

Query: 245 IVAMNAMVSGYVQRGLA-------TEALNLVEEIGTPRV--------------------- 276
           +V+ N+M+SG    G +        + LNL  ++ +  +                     
Sbjct: 224 VVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHA 283

Query: 277 -------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                     V+  NTL+  +SK G+    +++F  M     E  +VSWTS+I+  V   
Sbjct: 284 YGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMG----ETTIVSWTSIIAAHVREG 339

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
            + EA   F EM S+G  P    ++S++ ACA + ++ +G+E+H       +  +L V +
Sbjct: 340 LHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSN 399

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
           AL++MYAKCG + EA  +F ++  +N V+WN+MI G + +   +EA++LF  M+++ K D
Sbjct: 400 ALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQLKPD 459

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEM 508
            ++   VL AC  +  +E G+ +   +  K        H AC +VD+  + G L  A ++
Sbjct: 460 DVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL--HVACALVDMYVKCGLLVLAQQL 517

Query: 509 IKTMSTEPDLFVWGALLGACKNH--GNIELAEIAAKHLSELEPESAA 553
              M  + D+ +W  ++     H  G   ++      ++ +EPE ++
Sbjct: 518 FD-MIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESS 563



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 186/374 (49%), Gaps = 44/374 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ LHA  + +G +        L+  Y++C N++ A  +F ++ +T I  W ++  A
Sbjct: 275 LTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAA 334

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + R G H EA+ +F EM  +GL+ +I+ + SV+ AC   + +  G ++H+ + K++ G++
Sbjct: 335 HVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSN 394

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L++MY+KCGS+E+A  +F ++  K+IV+ N M+ GY Q  L  EAL L  ++  
Sbjct: 395 LPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-Q 453

Query: 274 PRVKPNVVTWN-----------------------------------TLISGFSKSGDQVM 298
            ++KP+ VT                                      L+  + K G  V+
Sbjct: 454 KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVL 513

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             +LF ++  K    D++ WT +I+G  +H F   EA  TF++M   G  P  ++ +SIL
Sbjct: 514 AQQLFDMIPKK----DMILWTVMIAGYGMHGF-GKEAISTFEKMRVAGIEPEESSFTSIL 568

Query: 358 PACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-N 415
            AC  +  ++ G K          +E  L   + +VD+  + G +S A    + M  + +
Sbjct: 569 YACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPD 628

Query: 416 TVTWNSMIFGCANH 429
              W +++ GC  H
Sbjct: 629 AAIWGALLSGCRIH 642



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 138/269 (51%), Gaps = 5/269 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ +H  +  + +     ++  L+  Y +C ++  A ++F ++P  NI  W  + G
Sbjct: 375 SLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIG 434

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++     EA+ +F +M  Q LK +   +  VL AC  L+ +  G +IH  +L+  + +
Sbjct: 435 GYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFS 493

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V  +L+DMY KCG +  A+++FD + +KD++    M++GY   G   EA++  E++ 
Sbjct: 494 DLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMR 553

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
              ++P   ++ +++   + SG      KLF  M+++  +EP +  +  ++  L+ +   
Sbjct: 554 VAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNL 613

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPAC 360
             A+   + M  +   P +A   ++L  C
Sbjct: 614 SRAYKFIETMPIK---PDAAIWGALLSGC 639


>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
          Length = 566

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 259/480 (53%), Gaps = 29/480 (6%)

Query: 89  IRDRALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           ++ +ALQ GK +HA L+ S +   +  +++KL+  Y  C ++  AR++ +     N+  +
Sbjct: 35  LKCKALQPGKQVHAMLLASRIDMNILSMSSKLVGMYASCGDLQSARLVLERTQNPNVFAF 94

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             +  A A  GYH+EA+  F  M   G+  N F    VLK C  L D   G+++H ++ +
Sbjct: 95  NWMVSALAFHGYHEEAIGYFSLMQELGIVANKFTFSIVLKQCVGLMDFNKGKEVHCVISR 154

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
              G    V +S IDMY KCG V   +KVFD M+E+D+V+  +M+ GY   G   EAL L
Sbjct: 155 TGLGNVVSVANSXIDMYCKCGHVGYGRKVFDGMIERDVVSWTSMICGYCNIGTLEEALVL 214

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
            E +    ++PN  TWN +I+G+++ GD      LF  M  +G+ PD+V+W ++ISG   
Sbjct: 215 FERMKVEGLEPNDFTWNXMIAGYARDGDCNGAFVLFSRMVREGLVPDLVTWNAMISGFTQ 274

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           +    EA+  F++M   G  P   T++ +LPAC    ++ RGKE+HG    MG + ++ V
Sbjct: 275 SLKAVEAWRLFQDMXVAGIKPNQVTVTGLLPACGLMGSIHRGKELHGLIYRMGXDMNVFV 334

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERK 446
            +AL+D Y+KCG + +A  +FD++  +N  +WN+MI     HG  D +I+LF +M+ E  
Sbjct: 335 ATALIDXYSKCGTVKDAWDVFDRIPIKNVASWNAMIGCYGKHGLVDSSIQLFERMQAEGM 394

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + +H++  +VL+AC H GLVE G  +F                           R+ EAY
Sbjct: 395 QANHITLISVLSACSHGGLVEKGLTIF---------------------------RMVEAY 427

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           E+ K M  E    + GA    CK HG  +LA+  A+ +  +E +     + L+++YA  G
Sbjct: 428 ELFKEMPIEVTDSIVGAFFNGCKIHGRRDLAKXMAEDILRMELKRPGGFVTLSNIYAADG 487


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 179/480 (37%), Positives = 271/480 (56%), Gaps = 13/480 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLI--TFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R+L++ K +HA +  +GL     IA KL+  +  +    + +AR LF   P  ++     
Sbjct: 16  RSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNT 75

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           L    A     Q ++  F EM  +     + F    +LKA      + +G ++H   + H
Sbjct: 76  LIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVH 135

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
              T  FV ++L+ MYS+CG V  AKKVF+EM E ++VA NA+V+   + G    A  + 
Sbjct: 136 GLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMF 195

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
             +       N+ +WN +++G++K+G+  +  KLF  M  K    D VSW+++I G  HN
Sbjct: 196 NRMPFR----NLTSWNVMLAGYTKAGELELARKLFLEMPVK----DDVSWSTMIVGFAHN 247

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               EAF  F+E+   G  P   +++  L ACA A  +  GK +HG     G    + V 
Sbjct: 248 GFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVN 307

Query: 389 SALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
           +AL+D Y+KCG +  AR +F++M E R+ V+W SMI G A HGY +EAI+LF++MEE   
Sbjct: 308 NALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGI 367

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + D ++F ++L AC H GL+E G   F  M++ Y I P  EHY CMVDL GRAG+L +AY
Sbjct: 368 RPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAY 427

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           E I  M   P   +W  LLGAC  HGN++LAE   + LSEL+P ++ +++LL+++YA AG
Sbjct: 428 EFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAG 487


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 172/507 (33%), Positives = 270/507 (53%), Gaps = 41/507 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H  +I +G      + T +++ Y +C+ I +A  +F+ +   ++  W  L   
Sbjct: 161 LKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAG 220

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G+ + A+ +  +M   G K +   + S+L A   +  +  G  IH    +  F + 
Sbjct: 221 YAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESL 280

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA----LNLVE 269
             V ++L+DMY KCGS   A+ VF  M  K +V+ N M+ G  Q G + EA    L +++
Sbjct: 281 VNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLD 340

Query: 270 EIGTP-------------------------------RVKPNVVTWNTLISGFSKSGDQVM 298
           E   P                               ++  NV   N+LIS +SK     +
Sbjct: 341 EGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDI 400

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            + +F       +E   V+W ++I G   N C  EA + F  M SQG      T+  ++ 
Sbjct: 401 AASIFN-----NLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVIT 455

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A  +  R+ K IHG A+   ++ ++ V +ALVDMYAKCG I  AR LFD M ER+ +T
Sbjct: 456 ALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVIT 515

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G   HG   E ++LFN+M++   K + ++F +V++AC H G VE G  LF  MQ
Sbjct: 516 WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQ 575

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E Y + P  +HY+ MVDLLGRAG+L +A+  I+ M  +P + V GA+LGACK H N+EL 
Sbjct: 576 EDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELG 635

Query: 538 EIAAKHLSELEPESAANNMLLTDLYAN 564
           E AA+ L +L+P+    ++LL ++YA+
Sbjct: 636 EKAAQKLFKLDPDEGGYHVLLANIYAS 662



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 141/541 (26%), Positives = 251/541 (46%), Gaps = 90/541 (16%)

Query: 104 LIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTGAYARRGYHQE 162
           +I +G        TK+I+ + +  +   A  +F+ +  K ++   I L G YA+     +
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKG-YAKNSSLGD 128

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
           A+  F  M    ++  +     +L+ CG   D+  G +IH L++ + F ++ FV+++++ 
Sbjct: 129 ALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMS 188

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT 282
           +Y+KC  ++ A K+F+ M  KD+V+   +V+GY Q G A  AL LV ++     KP+ VT
Sbjct: 189 LYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVT 248

Query: 283 W-----------------------------------NTLISGFSKSGDQVMVSKLFQLMR 307
                                               N L+  + K G   +   +F+ MR
Sbjct: 249 LVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMR 308

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           +K     VVSW ++I G   N  ++EAF TF +ML +G  PT  T+  +L ACA+  ++ 
Sbjct: 309 SK----TVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLE 364

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           RG  +H     + ++ ++ V ++L+ MY+KC  +  A ++F+ + E+  VTWN+MI G A
Sbjct: 365 RGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYA 423

Query: 428 NHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC-------------------------- 460
            +G   EA+ LF  M+ +  KLD  +   V+TA                           
Sbjct: 424 QNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVF 483

Query: 461 ---------CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
                       G ++  ++LF+MMQE++ I      +  M+D  G  G   E  ++   
Sbjct: 484 VSTALVDMYAKCGAIKTARKLFDMMQERHVIT-----WNAMIDGYGTHGVGKETLDLFNE 538

Query: 512 M---STEPDLFVWGALLGACKNHGNIELAEIAAKHLSE---LEPESAANNMLLTDLYANA 565
           M   + +P+   + +++ AC + G +E   +  K + E   LEP +  +   + DL   A
Sbjct: 539 MQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEP-TMDHYSAMVDLLGRA 597

Query: 566 G 566
           G
Sbjct: 598 G 598



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 170/325 (52%), Gaps = 15/325 (4%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +H  L    L     +   LI+ Y++C+ +  A  +F+ + KTN+  W A+   
Sbjct: 363 LERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILG 421

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G  +EA+ +F  M  QG+K + F +  V+ A    S     + IH L ++     +
Sbjct: 422 YAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNN 481

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMY+KCG+++ A+K+FD M E+ ++  NAM+ GY   G+  E L+L  E+  
Sbjct: 482 VFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQK 541

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCND 332
             VKPN +T+ ++IS  S SG       LF+ M+    +EP +  +++++  L      D
Sbjct: 542 GAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLD 601

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSAL 391
           +A++  +EM  +   P  + + ++L AC    N+  G++       +   EG  HV   L
Sbjct: 602 DAWNFIQEMPIK---PGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHV--LL 656

Query: 392 VDMYAKCGFISEARTLFDKMSERNT 416
            ++YA       + +++DK+++  T
Sbjct: 657 ANIYA-------SNSMWDKVAKVRT 674



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 160/380 (42%), Gaps = 52/380 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL+ G+ +H     SG   L  +   L+  Y +C +   AR++F  +    +  W  + 
Sbjct: 260 KALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMI 319

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
              A+ G  +EA   F +M  +G       +  VL AC +L D+  G  +H L+ K    
Sbjct: 320 DGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLD 379

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V++SLI MYSKC  V+ A  +F+ + EK  V  NAM+ GY Q G   EALNL   +
Sbjct: 380 SNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMM 438

Query: 272 GTPRVK-----------------------------------PNVVTWNTLISGFSKSGDQ 296
            +  +K                                    NV     L+  ++K G  
Sbjct: 439 QSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAI 498

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               KLF +M+    E  V++W ++I G   +    E  D F EM      P   T  S+
Sbjct: 499 KTARKLFDMMQ----ERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSV 554

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVR------SALVDMYAKCGFISEARTLFDK 410
           + AC+ +  +       G  +   ++ D ++       SA+VD+  + G + +A     +
Sbjct: 555 ISACSHSGFVEE-----GLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQE 609

Query: 411 MSERNTVT-WNSMIFGCANH 429
           M  +  ++   +M+  C  H
Sbjct: 610 MPIKPGISVLGAMLGACKIH 629


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 271/503 (53%), Gaps = 33/503 (6%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + G + H  ++  G      +   LI+FY +   I  A ++F+ +P+ +   W ++    
Sbjct: 434 RDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGC 493

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           +  G + EA+ +F  M  QG + +   + SVL AC        G  +H   +K     + 
Sbjct: 494 SSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGET 553

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            + ++L+DMYS C   +   ++F  M +K++V+  AM++ Y++ GL  +   L++E+   
Sbjct: 554 SLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLD 613

Query: 275 RVKPNVVTWNTLISGFS-----KSGDQV--------------MVSKLFQL-MRAKGVE-- 312
            ++P+V    + +  F+     K G  V              + + L ++ ++ + VE  
Sbjct: 614 GIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEA 673

Query: 313 ---------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                     DV+SW ++I G   N   +E+F  F +ML Q F P + T++ ILPA AS 
Sbjct: 674 RLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASI 732

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           +++ RG+EIH  A+  G   D +  +ALVDMY KCG +  AR LFD+++++N ++W  MI
Sbjct: 733 SSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMI 792

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G   HG+   AI LF QM     + D  SF+A+L ACCH GL   G+R F  MQ++YKI
Sbjct: 793 AGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKI 852

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P+ +HY C+VDLL R G L EA E I++M  EPD  +W +LL  C+ H N++LAE  A 
Sbjct: 853 EPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVAD 912

Query: 543 HLSELEPESAANNMLLTDLYANA 565
            + +LEPE+    +LL ++YA A
Sbjct: 913 KVFKLEPENTGYYVLLANIYAEA 935



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/498 (25%), Positives = 228/498 (45%), Gaps = 57/498 (11%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLA----RLTQIATKLITFYTECQNIHHARML 135
           +Y   +++   +R+L++ K  HA +  S  A    + + +  +L+  Y +C ++  AR +
Sbjct: 99  SYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTV 158

Query: 136 FDEIPK--TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
           FD +P    ++  W +L  AYA+ G  QEAV++F +M   G+  +   +  VLK    L 
Sbjct: 159 FDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLG 218

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
            +  GE IH L+ K   G    V ++LI +YS+CG +E A +VFD M  +D ++ N+M+ 
Sbjct: 219 SLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIG 278

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVT------------------------------W 283
           G    G    A++L  ++ +   + + VT                              W
Sbjct: 279 GCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLW 338

Query: 284 ---------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                          + L+  + K GD     ++F  M +KG   +V  W  ++ G    
Sbjct: 339 GLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKG---NVHVWNLIMGGYAKV 395

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
              +E+   F +M   G  P    IS +L      +  R G   HG  + +G      V 
Sbjct: 396 GEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVC 455

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           +AL+  YAK   I +A  +F++M  ++T++WNS+I GC+++G   EAIELF +M  + ++
Sbjct: 456 NALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQE 515

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
           LD ++  +VL AC        G R+ +    K  ++  T     ++D+           +
Sbjct: 516 LDSVTLLSVLPACAQSRYWFAG-RVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQ 574

Query: 508 MIKTMSTEPDLFVWGALL 525
           + ++M  + ++  W A++
Sbjct: 575 IFRSMG-QKNVVSWTAMI 591



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 243/504 (48%), Gaps = 45/504 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALT 151
           +++SG +     + SG+     + +KL+  Y +C ++  AR +FD +  K N+H W  + 
Sbjct: 331 SVKSGLLWGLDSVQSGIDD-AALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIM 389

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G YA+ G  +E++++F +MH  G+  +   I  +LK    LS    G   H  ++K  FG
Sbjct: 390 GGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFG 449

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V ++LI  Y+K   +  A  VF+ M  +D ++ N+++SG    GL +EA+ L   +
Sbjct: 450 AQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRM 509

Query: 272 GTPRVKPNVVT-------------W----------------------NTLISGFSKSGDQ 296
            T   + + VT             W                      N L+  +S   D 
Sbjct: 510 WTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDW 569

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              +++F+ M  K    +VVSWT++I+  +     D+     +EM+  G  P    ++S 
Sbjct: 570 QSTNQIFRSMGQK----NVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSA 625

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L A A   ++++GK +HG  I  G+E  L V +AL++MY KC  + EAR +FD+++ ++ 
Sbjct: 626 LHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDV 685

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           ++WN++I G + + + +E+  LF+ M  + + + ++ T +L A   +  +E G R  +  
Sbjct: 686 ISWNTLIGGYSRNNFPNESFSLFSDMLLQFRPNAVTMTCILPAAASISSLERG-REIHAY 744

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH--GNI 534
             +   +  +     +VD+  + G L  A  +   + T+ +L  W  ++     H  G  
Sbjct: 745 ALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRL-TKKNLISWTIMIAGYGMHGFGKH 803

Query: 535 ELAEIAAKHLSELEPESAANNMLL 558
            +A       S +EP++A+ + +L
Sbjct: 804 AIALFEQMRGSGIEPDAASFSAIL 827



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 154/294 (52%), Gaps = 5/294 (1%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           A +  +  +  D +L+ GK +H   I +G+ +L  +A  L+  Y +C+N+  AR++FD +
Sbjct: 621 AVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRV 680

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
              ++  W  L G Y+R  +  E+ ++F +M +Q  + N   +  +L A   +S +  G 
Sbjct: 681 TNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGR 739

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH+  L+  F  D++  ++L+DMY KCG++  A+ +FD + +K++++   M++GY   G
Sbjct: 740 EIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHG 799

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSW 318
               A+ L E++    ++P+  +++ ++     SG      + F+ M+ +  +EP +  +
Sbjct: 800 FGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHY 859

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           T ++  L       EA +  + M  +   P S+   S+L  C    N++  +++
Sbjct: 860 TCIVDLLSRTGDLKEALEFIESMPIE---PDSSIWVSLLHGCRIHKNVKLAEKV 910



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 165/391 (42%), Gaps = 86/391 (21%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSF----GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           V++ CG    +   ++ H+L+   S     G  + +   L+  Y KCG + +A+ VFD  
Sbjct: 103 VVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFD-- 160

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
                                          G P    +V  W +L+S ++K+GD     
Sbjct: 161 -------------------------------GMPPQAADVRVWTSLMSAYAKAGD----- 184

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             FQ                            EA   F++M   G  P +  +S +L   
Sbjct: 185 --FQ----------------------------EAVSLFRQMQCCGVSPDAHAVSCVLKCV 214

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +S  ++  G+ IHG    +G+     V +AL+ +Y++CG + +A  +FD M  R+ ++WN
Sbjct: 215 SSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWN 274

Query: 421 SMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           SMI GC ++G+   A++LF++M  +  ++  ++  +VL AC  +G   +G+ +      K
Sbjct: 275 SMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHG-YSVK 333

Query: 480 YKIMPRTEHYACMVD--LLG--------RAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             ++   +     +D   LG        + G +A A  +   MS++ ++ VW  ++G   
Sbjct: 334 SGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYA 393

Query: 530 NHGNIE--LAEIAAKHLSELEPESAANNMLL 558
             G  E  L+     H   + P+  A + LL
Sbjct: 394 KVGEFEESLSLFVQMHELGIAPDEHAISCLL 424


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 179/506 (35%), Positives = 277/506 (54%), Gaps = 40/506 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +H  +I SG     Q+A  L+  Y++C N+  AR LF+ +P+T+   W  L   Y +
Sbjct: 265 GTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQ 324

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  EA  +F+ M   G+K +     S L +      +   +++HS +++H    D ++
Sbjct: 325 NGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYL 384

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVEEIG 272
            S+LID+Y K G VE A+K+F +    D+    AM+SGYV  GL  +A+N    L++E  
Sbjct: 385 KSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGM 444

Query: 273 TP------------------------------RVKPNVVTWNTLISG-FSKSGDQVMVSK 301
            P                              +   N+V   + I+  ++K G   +  +
Sbjct: 445 VPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYE 504

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            F+ M     E D + W S+IS    N   + A D F++M   G    S ++SS L + A
Sbjct: 505 FFRRMS----ETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAA 560

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           +   +  GKE+HG  I      D  V SAL+DMY+KCG ++ AR +F+ M+ +N V+WNS
Sbjct: 561 NLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNS 620

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I    NHG   E ++LF++M       DH++F  +++AC H GLV  G   F+ M  +Y
Sbjct: 621 IIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREY 680

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I  R EHYACMVDL GRAGRL EA++ IK+M   PD  VWG LLGAC+ HGN+ELA++A
Sbjct: 681 GIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLA 740

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           ++HL EL+P+++   +LL++++A+AG
Sbjct: 741 SRHLLELDPKNSGYYVLLSNVHADAG 766



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 222/454 (48%), Gaps = 42/454 (9%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + + LI  Y +   I  AR +FDE+P+ +   W  +   Y + G    A+  F  M    
Sbjct: 182 VGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSY 241

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
              N      +L  C        G ++H LV+   F  D  V ++L+ MYSKCG++  A+
Sbjct: 242 SMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDAR 301

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------- 283
           K+F+ M + D V  N +++GYVQ G   EA  L   + +  VKP+ VT+           
Sbjct: 302 KLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG 361

Query: 284 ------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                                   + LI  + K GD  M  K+FQ    +    DV   T
Sbjct: 362 SLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQ----QNTLVDVAVCT 417

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++ISG V +  N +A +TF+ ++ +G  P S T++S+LPACA+ A ++ GKE+H   +  
Sbjct: 418 AMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKK 477

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
            +E  ++V SA+ DMYAKCG +  A   F +MSE +++ WNSMI   + +G  + A++LF
Sbjct: 478 QLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLF 537

Query: 440 NQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
            QM     K D +S ++ L++  ++  +  G+ +   +         T   + ++D+  +
Sbjct: 538 RQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRN-AFSSDTFVASALIDMYSK 596

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            G+LA A  +   M+ + ++  W +++ A  NHG
Sbjct: 597 CGKLALARCVFNLMAGKNEV-SWNSIIAAYGNHG 629



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 228/481 (47%), Gaps = 44/481 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +Q  + +H Q+IV G++ +  ++++++  Y  C  I     LF  +   N   W  +   
Sbjct: 60  VQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRG 119

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
               G+   A+  + +M    +  + +  P V+KACG L+++     +H+      F  D
Sbjct: 120 LYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVD 179

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV S+LI +Y+  G +  A++VFDE+ ++D +  N M+ GYV+ G    A+     + T
Sbjct: 180 LFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRT 239

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
                N VT+                                   NTL++ +SK G+   
Sbjct: 240 SYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFD 299

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             KLF  M     + D V+W  +I+G V N   DEA   F  M+S G  P S T +S LP
Sbjct: 300 ARKLFNTMP----QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLP 355

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           +   + ++R  KE+H   +   V  D++++SAL+D+Y K G +  AR +F + +  +   
Sbjct: 356 SILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAV 415

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF-NMM 476
             +MI G   HG   +AI  F  + +E    + L+  +VL AC  +  ++LG+ L  +++
Sbjct: 416 CTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDIL 475

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +++ + +      + + D+  + GRL  AYE  + MS E D   W +++ +   +G  E+
Sbjct: 476 KKQLENIVNVG--SAITDMYAKCGRLDLAYEFFRRMS-ETDSICWNSMISSFSQNGKPEM 532

Query: 537 A 537
           A
Sbjct: 533 A 533



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 158/379 (41%), Gaps = 46/379 (12%)

Query: 94  LQSGKILHAQLIVSGLARL-----TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           L+SG + H + + S + R        + + LI  Y +  ++  AR +F +    ++    
Sbjct: 358 LESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCT 417

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+   Y   G + +A+  F  +  +G+  N   + SVL AC  L+ +  G+++H  +LK 
Sbjct: 418 AMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKK 477

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
                  V S++ DMY+KCG ++ A + F  M E D +  N+M+S + Q G    A++L 
Sbjct: 478 QLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLF 537

Query: 269 EEIGTPRVK-----------------------------------PNVVTWNTLISGFSKS 293
            ++G    K                                    +    + LI  +SK 
Sbjct: 538 RQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKC 597

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G   +   +F LM  K    + VSW S+I+   ++ C  E  D F EML  G  P   T 
Sbjct: 598 GKLALARCVFNLMAGK----NEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTF 653

Query: 354 SSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
             I+ AC  A  +  G     C     G+   +   + +VD+Y + G + EA      M 
Sbjct: 654 LVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMP 713

Query: 413 -ERNTVTWNSMIFGCANHG 430
              +   W +++  C  HG
Sbjct: 714 FTPDAGVWGTLLGACRLHG 732



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           +  + S+  AC+ A+ +++ +++H   IV G+     + S ++ +Y  CG IS+   LF 
Sbjct: 44  TTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFF 103

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIEL-FNQMEERKKLDHLSFTAVLTAC 460
            +   N + WN MI G    G+ D A+   F  +      D  +F  V+ AC
Sbjct: 104 GLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 167/508 (32%), Positives = 269/508 (52%), Gaps = 42/508 (8%)

Query: 97   GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
            G+ +H  ++  GL     ++T L++ Y++C  +  A  +F  +    +  W A+  AY  
Sbjct: 790  GRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVE 849

Query: 157  RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                  A+ +F  M  + +  + F + +V+  C        G+ +H+ + K    +   +
Sbjct: 850  NDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAI 909

Query: 217  VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI--GTP 274
             S+L+ +YSKCG    A  VF  M EKD+VA  +++SG  + G   EAL +  ++     
Sbjct: 910  ESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 969

Query: 275  RVKP-----------------------------------NVVTWNTLISGFSKSGDQVMV 299
             +KP                                   NV   ++LI  +SK G   M 
Sbjct: 970  SLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMA 1029

Query: 300  SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             K+F  MR +    ++V+W S+IS    N   + + + F  MLSQG  P S +I+S+L A
Sbjct: 1030 LKVFTSMRPE----NIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVA 1085

Query: 360  CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
             +S A++ +GK +HG  + +G+  D H+++AL+DMY KCGF   A  +F KM  ++ +TW
Sbjct: 1086 ISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITW 1145

Query: 420  NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            N MI+G  +HG C  A+ LF+++++  +  D ++F ++++AC H G VE G+  F +M++
Sbjct: 1146 NLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQ 1205

Query: 479  KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
             Y I P+ EHYA MVDLLGRAGRL EAY  IK M TE D  +W  LL A + H N+EL  
Sbjct: 1206 DYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGI 1265

Query: 539  IAAKHLSELEPESAANNMLLTDLYANAG 566
            ++A+ L  +EPE  +  + L +LY  AG
Sbjct: 1266 LSAEKLLRMEPERGSTYVQLINLYMEAG 1293



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 187/398 (46%), Gaps = 45/398 (11%)

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           L  ++F  PS+LKAC  L+++ +G+ IH  ++   +  D F+ +SL++MY KCG ++ A 
Sbjct: 557 LWTSVFTFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAV 616

Query: 235 KVFDEMVE-----KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
           +VFD   +     +D+   N+M+ GY +     E +     +    V+P+  + + ++S 
Sbjct: 617 QVFDGWSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSV 676

Query: 290 FSK---------------------SGDQVMVSKLFQLMRAKGVEPD-------------V 315
             K                      GD  + + L  +    G+  D             V
Sbjct: 677 LCKEGNFRREDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNV 736

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           V W  +I G   +   + + + +    S      S + +  L AC+ + N   G++IH  
Sbjct: 737 VLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCD 796

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
            + MG++ D +V ++L+ MY+KCG + EA T+F  + ++    WN+M+     +     A
Sbjct: 797 VVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSA 856

Query: 436 IELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMV 493
           +ELF  M ++  L D  + + V++ C   GL + G+ +   + +   +  P  E  + ++
Sbjct: 857 LELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIE--SALL 914

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKN 530
            L  + G   +AY + K+M  E D+  WG+L+ G CKN
Sbjct: 915 TLYSKCGCDTDAYLVFKSME-EKDMVAWGSLISGLCKN 951



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 156/328 (47%), Gaps = 15/328 (4%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            AL  G  +H  +I +G      + + LI  Y++C     A  +F  +   NI  W ++  
Sbjct: 990  ALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMIS 1049

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             Y+R    + ++ +F+ M  QG+  +   I SVL A    + +  G+ +H   L+    +
Sbjct: 1050 CYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPS 1109

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            D  + ++LIDMY KCG  + A+ +F +M  K ++  N M+ GY   G    AL+L +E+ 
Sbjct: 1110 DTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSLFDELK 1169

Query: 273  TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
                 P+ VT+ +LIS  + SG        F++M+   G+EP +  + +++  L      
Sbjct: 1170 KAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRL 1229

Query: 332  DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE--IHGCAIVMGVE---GDLH 386
            +EA+   K M      PT A  SSI     SA+      E  I     ++ +E   G  +
Sbjct: 1230 EEAYSFIKAM------PTEAD-SSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTY 1282

Query: 387  VRSALVDMYAKCGFISEARTLFDKMSER 414
            V+  L+++Y + G  +EA  L  +M ER
Sbjct: 1283 VQ--LINLYMEAGLKNEAAKLLGEMKER 1308


>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
 gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
          Length = 610

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 176/495 (35%), Positives = 269/495 (54%), Gaps = 42/495 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+ +HAQL   GLA  +  AT L   Y +C+    AR +FD +P  +   W AL   
Sbjct: 75  LATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRVFDRMPARDRVAWNALVAG 134

Query: 154 YARRGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           YAR G    A+     M  +  G + +   + SVL AC     +G   ++H+  L+    
Sbjct: 135 YARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADARVLGACREVHAFALRAGLD 194

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL---- 267
               V ++++D Y KCG+VE A+ VFD M  ++ V+ NAM+ GY + G A+EAL L    
Sbjct: 195 ELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYAENGNASEALALFWRM 254

Query: 268 ------------------VEEIG----TPRV---------KPNVVTWNTLISGFSKSGDQ 296
                               E+G      RV         K NV   N LI+ +SK    
Sbjct: 255 VQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLKSNVSVMNALITTYSKCKRA 314

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
            + +  F  +   G++   +SW ++I G   N C+++A   F  M  +   P S T+ S+
Sbjct: 315 DLAAHAFNEL---GIKKTRISWNAMILGFTQNGCSEDAERLFARMQLENVKPDSFTLVSV 371

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           +PA A  ++  + + IHG +I   ++ D++V +AL+DMY+KCG ++ AR LFD   +R+ 
Sbjct: 372 IPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGRVTIARKLFDSARDRHV 431

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNM 475
           +TWN+MI G  +HG+   A+ELF +M+    L +  +F +VL AC H GLV+ G++ F  
Sbjct: 432 ITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGRKYFAS 491

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M++ Y + P  EHY  +VDLLGRAG++ EA+  I+ M  EP + V+GA+LGACK H N+E
Sbjct: 492 MKD-YGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPIEPGISVYGAMLGACKLHKNVE 550

Query: 536 LAEIAAKHLSELEPE 550
           LAE +A+ + EL PE
Sbjct: 551 LAEESAQKIFELGPE 565



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 41/375 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L + + +HA  + +GL  L  ++T ++  Y +C  +  AR +FD +P  N   W A+ 
Sbjct: 176 RVLGACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMI 235

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA  G   EA+ +F  M  +G+      + + L+AC  L  +    ++H L+++    
Sbjct: 236 DGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLK 295

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           ++  V+++LI  YSKC   + A   F+E+ ++K  ++ NAM+ G+ Q G + +A  L   
Sbjct: 296 SNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFAR 355

Query: 271 IGTPRVKPNVVT------------------W-----------------NTLISGFSKSGD 295
           +    VKP+  T                  W                   LI  +SK G 
Sbjct: 356 MQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGR 415

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             +  KLF   R +     V++W ++I G   +     A + F+EM   G  P   T  S
Sbjct: 416 VTIARKLFDSARDR----HVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLS 471

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           +L AC+ A  +  G++        G+E  +     LVD+  + G + EA +    M  E 
Sbjct: 472 VLAACSHAGLVDEGRKYFASMKDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPIEP 531

Query: 415 NTVTWNSMIFGCANH 429
               + +M+  C  H
Sbjct: 532 GISVYGAMLGACKLH 546



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 159/328 (48%), Gaps = 10/328 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE--IPKTNIHRWIALT 151
           L   + +H  L+  GL     +   LIT Y++C+    A   F+E  I KT I  W A+ 
Sbjct: 279 LDEARRVHELLVRVGLKSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRIS-WNAMI 337

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + + G  ++A  +F  M ++ +K + F + SV+ A   +SD      IH   ++H   
Sbjct: 338 LGFTQNGCSEDAERLFARMQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLD 397

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D +V+++LIDMYSKCG V  A+K+FD   ++ ++  NAM+ GY   G    A+ L EE+
Sbjct: 398 QDIYVLTALIDMYSKCGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQVAVELFEEM 457

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                 PN  T+ ++++  S +G      K F  M+  G+EP +  + +++  L      
Sbjct: 458 KGTGSLPNETTFLSVLAACSHAGLVDEGRKYFASMKDYGLEPGMEHYGTLVDLLGRAGKV 517

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDL-HVRS 389
           DEA+   + M  +   P  +   ++L AC    N+   +E       +G  EG L    +
Sbjct: 518 DEAWSFIQNMPIE---PGISVYGAMLGACKLHKNVELAEESAQKIFELGPEEGSLSQTMN 574

Query: 390 ALVDMYAKCGFISEART--LFDKMSERN 415
           A ++  A+C  I E +   L+D MS  N
Sbjct: 575 ASMEELARCPGIGEQKVKCLYDSMSHSN 602



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 172/391 (43%), Gaps = 51/391 (13%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           ++LK C   +D+ TG  +H+ +      +++   ++L +MY KC     A++VFD M  +
Sbjct: 64  ALLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRVFDRMPAR 123

Query: 244 DIVAMNAMVSGYVQRGLATEALNLV-----EEIGTPRVKPNVVTW--------------- 283
           D VA NA+V+GY + GL   A+  V     EE G    +P+ +T                
Sbjct: 124 DRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGE---QPDSITLVSVLPACADARVLGA 180

Query: 284 --------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                                 ++  + K G       +F  M  +    + VSW ++I 
Sbjct: 181 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVR----NSVSWNAMID 236

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G   N    EA   F  M+ +G   T A + + L AC     +   + +H   + +G++ 
Sbjct: 237 GYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLKS 296

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNT-VTWNSMIFGCANHGYCDEAIELFNQM 442
           ++ V +AL+  Y+KC     A   F+++  + T ++WN+MI G   +G  ++A  LF +M
Sbjct: 297 NVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFARM 356

Query: 443 E-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           + E  K D  +  +V+ A   +    L  R  +    ++++         ++D+  + GR
Sbjct: 357 QLENVKPDSFTLVSVIPAVADIS-DPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGR 415

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +  A ++  + + +  +  W A++    +HG
Sbjct: 416 VTIARKLFDS-ARDRHVITWNAMIHGYGSHG 445



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 26/313 (8%)

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           D+    A+ +    RGLA+E+L                    L + + K    V   ++F
Sbjct: 74  DLATGRAVHAQLTARGLASESL----------------AATALANMYFKCRRPVDARRVF 117

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ--GFCPTSATISSILPACA 361
             M A+    D V+W ++++G   N     A +    M  +  G  P S T+ S+LPACA
Sbjct: 118 DRMPAR----DRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACA 173

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
            A  +   +E+H  A+  G++  ++V +A++D Y KCG +  AR +FD M  RN+V+WN+
Sbjct: 174 DARVLGACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNA 233

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G A +G   EA+ LF +M +E   +   +  A L AC  +G ++  +R+  ++  + 
Sbjct: 234 MIDGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLV-RV 292

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE-- 538
            +         ++    +  R   A      +  +     W A++     +G  E AE  
Sbjct: 293 GLKSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERL 352

Query: 539 IAAKHLSELEPES 551
            A   L  ++P+S
Sbjct: 353 FARMQLENVKPDS 365



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T +++L  CA+ A++  G+ +H      G+  +    +AL +MY KC    +AR +
Sbjct: 57  PVLRTFTALLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRV 116

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM---EERKKLDHLSFTAVLTAC 460
           FD+M  R+ V WN+++ G A +G    A+E   +M   E  ++ D ++  +VL AC
Sbjct: 117 FDRMPARDRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPAC 172


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 266/502 (52%), Gaps = 32/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  LI  G       A  L+  Y +   +  A  +FDEI K +I  W A+      
Sbjct: 130 GRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVL 189

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             YH  A+ +  EM+  G+  N+F + S LKAC  ++    G ++HS ++K   G+D+F+
Sbjct: 190 HEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFL 249

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
              LIDMYSKC S++ A+ VF  M E+D++A NA++SG+ Q     EA +L   + T  +
Sbjct: 250 GVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGI 309

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE------------------------ 312
             N  T +T++   +      M  ++  L    G E                        
Sbjct: 310 GFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATR 369

Query: 313 -------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                   D+V +TS+++    +   +EA   + EM  +G  P S   SS+L ACAS + 
Sbjct: 370 VFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSA 429

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
             +GK++H   +  G   D+   ++LV+MYAKCG I +A   F ++  R  V+W++MI G
Sbjct: 430 YEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGG 489

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HGY  EA++LF QM +     +H++  +VL AC H GLV   +  FN M+  + I P
Sbjct: 490 LAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEP 549

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             EHYACM+DLLGRAG+L  A E++  M  + +  VWGALLGA + H NI+L E AA+ L
Sbjct: 550 MQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEML 609

Query: 545 SELEPESAANNMLLTDLYANAG 566
             LEPE +  ++LL ++YA+ G
Sbjct: 610 LALEPEKSGTHVLLANIYASVG 631



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 232/477 (48%), Gaps = 42/477 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L  GK +H  ++V+G      +A  L+  Y +C     AR LFD IP  ++  W AL 
Sbjct: 24  KDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALF 83

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y     H EAV++FH+M + G++ N F + S++  C  L D   G KIH  ++K  + 
Sbjct: 84  SCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYD 143

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +DAF  ++L+DMY+K G +E A  VFDE+ + DIV+ NA+++G V       AL L+ E+
Sbjct: 144 SDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREM 203

Query: 272 GTPRVKPNVVTWNT-----------------------------------LISGFSKSGDQ 296
               + PN+ T ++                                   LI  +SK    
Sbjct: 204 NKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSM 263

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +F+LM     E D+++W +VISG   N  ++EA   F  M ++G      T+S++
Sbjct: 264 DDARLVFKLMP----ERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTV 319

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L + A+       ++IH  ++  G E D +V ++L+D Y KCG + +A  +F++    + 
Sbjct: 320 LKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDL 379

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V + S++   A  G  +EA+ L+ +M++R  K D    +++L AC  +   E G+++ ++
Sbjct: 380 VLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQV-HV 438

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              K+  M        +V++  + G + +A      +     +  W A++G    HG
Sbjct: 439 HILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHG 494



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 160/304 (52%), Gaps = 31/304 (10%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           MH+ G+K N F  PSVLKAC    D+  G+++H +V+   F +D FV +SL+ +Y+KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS- 288
              A+ +FD + ++ +V+ NA+ S YV   +  EA++L  ++    ++PN  + +++I+ 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 289 -------------------------GFSKSGDQVMVSKLFQLMRAKGV-----EPDVVSW 318
                                     FS +    M +K+  L  A  V     +PD+VSW
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
            ++I+G V +  +  A +  +EM   G CP   T+SS L ACA  A    G+++H   I 
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           M +  D  +   L+DMY+KC  + +AR +F  M ER+ + WN++I G + +   +EA  L
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300

Query: 439 FNQM 442
           F  M
Sbjct: 301 FPLM 304



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 138/260 (53%), Gaps = 12/260 (4%)

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVISGLVHNFCNDEAFDTFKEM 341
           N+L+  ++K G       LF  +      PD  VVSW ++ S  VH+  + EA   F +M
Sbjct: 49  NSLVILYAKCGGFGDARSLFDAI------PDRSVVSWNALFSCYVHSDMHGEAVSLFHDM 102

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
           +  G  P   ++SS++  C    +  +G++IHG  I +G + D    +ALVDMYAK G +
Sbjct: 103 VLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGIL 162

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL-SFTAVLTAC 460
            +A ++FD++++ + V+WN++I GC  H Y   A+EL  +M +     ++ + ++ L AC
Sbjct: 163 EDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKAC 222

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
             + L ELG++L + +  K  +   +     ++D+  +   + +A  + K M  E D+  
Sbjct: 223 AGMALRELGRQLHSSLI-KMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM-PERDMIA 280

Query: 521 WGALL-GACKNHGNIELAEI 539
           W A++ G  +N  + E A +
Sbjct: 281 WNAVISGHSQNEEDEEAASL 300



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 14/218 (6%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L AC    ++  GK++HG  +V G + D  V ++LV +YAKCG   +AR+LFD + +R
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74

Query: 415 NTVTWNSMIFGCANHGYC-DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           + V+WN++ F C  H     EA+ LF+ M     + +  S ++++  C  +     G+++
Sbjct: 75  SVVSWNAL-FSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKI 133

Query: 473 FNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
              +    K+   ++ ++   +VD+  + G L +A  +   ++ +PD+  W A++  C  
Sbjct: 134 HGYL---IKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSWNAIIAGCVL 189

Query: 531 HGNIELAEIAAKHLSELEPESAANNM--LLTDLYANAG 566
           H   E    A + L E+       NM  L + L A AG
Sbjct: 190 H---EYHHRALELLREMNKSGMCPNMFTLSSALKACAG 224



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + GK +H  ++  G          L+  Y +C +I  A   F  IP   I  W A+ G
Sbjct: 429 AYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIG 488

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+ GY +EA+ +F +M   G+  N   + SVL AC H   +   +   +  +K  FG 
Sbjct: 489 GLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFN-SMKILFGI 547

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +      + +ID+  + G +E A     E+V K     NA+V G
Sbjct: 548 EPMQEHYACMIDLLGRAGKLEAAM----ELVNKMPFQANALVWG 587


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 188/597 (31%), Positives = 306/597 (51%), Gaps = 103/597 (17%)

Query: 72  RSFHL-SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           R  +L + + +++ ++  +R R+ +  +++HA+++++  +    I  +LI  Y +C  + 
Sbjct: 8   RDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLD 67

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH---------------------- 168
            AR LFD +P+ N   W +L     + G+  EA  +F                       
Sbjct: 68  DARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDR 127

Query: 169 ---------EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
                    +MH +    N +   S L AC  L D+  G ++H+LV K  + TD ++ S+
Sbjct: 128 FEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSA 187

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LIDMYSKCGSV  A++VF  M+E+++V  N++++ Y Q G A+EAL +   +    ++P+
Sbjct: 188 LIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPD 247

Query: 280 VVTWNTLISGFS-----KSGDQV----------------------MVSKLFQLMRAKGVE 312
            VT  +++S  +     K G Q+                      M +K  ++  A+ V 
Sbjct: 248 EVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVF 307

Query: 313 P-----DVVSWTSVIS-------------------------------GLVHNFCNDEAFD 336
                 +VVS TS++S                               G   N  N+EA  
Sbjct: 308 DRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALR 367

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH------GCAIVMGVEGDLHVRSA 390
            F+ +  +   PT  T  ++L ACA+ A++  G++ H      G     G E D+ V ++
Sbjct: 368 LFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNS 427

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLD 449
           L+DMY KCG I +   +F+KM ER+ V+WN++I G A +GY  EA+++F +M    +K D
Sbjct: 428 LIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPD 487

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           H++   VL AC H GLVE G+  F  M+E + ++P  +HY CMVDLLGRAG L EA  +I
Sbjct: 488 HVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLI 546

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + M   PD  VWG+LL ACK HGNIE+ + AA+ L E++P ++   +LL+++YA  G
Sbjct: 547 EAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELG 603



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 12/221 (5%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +   LI  Y +C +I     +F+++ + +   W A+   YA+ GY  EA+ +F +M + G
Sbjct: 424 VGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCG 483

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
            K +   +  VL AC H   +  G      + +H         + ++D+  + G + +AK
Sbjct: 484 EKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAK 543

Query: 235 KVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
            + + M V  D V   ++++     G   +   A   + EI      P V+  N + +  
Sbjct: 544 NLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSN-MYAEL 602

Query: 291 SKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVISGLVHNF 329
            + GD V V K   LMR +GV  +P   SW  V S  VH F
Sbjct: 603 GRWGDVVRVRK---LMRQQGVTKQPG-CSWIEVES-RVHVF 638


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 256/475 (53%), Gaps = 36/475 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R + + K +H   I  G      +   LI  Y +C+    AR++F+ +P  ++  W ++ 
Sbjct: 92  RDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMA 151

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G  +EA+  F +M + G + N   + S+L AC  L D+ +G ++H  V+++  G
Sbjct: 152 SCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMG 211

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            + FV S+L++MY+ C S+ +A+ VFD M  +D                           
Sbjct: 212 GNVFVSSALVNMYASCLSIRQAQLVFDSMSRRD--------------------------- 244

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                    V+WN LI+ +  + +      +F  M ++GV  +  SW +VI G + N   
Sbjct: 245 --------TVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRT 296

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           ++A +    M + GF P   TI+S+LPAC +  ++R GK+IHG         DL   +AL
Sbjct: 297 EKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTAL 356

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           V MYAKCG +  +R +F  M++R+TV+WN+MI   + HG  +EA+ LF +M +   + + 
Sbjct: 357 VFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNS 416

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT VL+ C H  LV+ G  +F+ M   + + P  +H++CMVD+L RAGRL EAYE IK
Sbjct: 417 VTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIK 476

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            M  EP    WGALLG C+ + N+EL  IAA  L E+E ++  N +LL+++  +A
Sbjct: 477 KMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSA 531



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 120/276 (43%), Gaps = 23/276 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK +H  +      +     T L+  Y +C ++  +R +F  + K +   W  +  
Sbjct: 330 SLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMII 389

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
           A +  G  +EA+ +F EM   G++ N      VL  C H   +  G  I  S+   HS  
Sbjct: 390 ATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVE 449

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
            DA   S ++D+ S+ G +E+A +   +M +E    A  A++ G   Y    L   A N 
Sbjct: 450 PDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANR 509

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLV 326
           + EI +      V+  N L+S    S      S+  +LMR +GV  +   SW  V    V
Sbjct: 510 LFEIESDNPGNYVLLSNILVSAKLWS----EASETRKLMRDRGVTKNPGCSWIQV-RNRV 564

Query: 327 HNFC-----NDEAFDTFK-------EMLSQGFCPTS 350
           H F      ND++ + ++       +M   G+ P +
Sbjct: 565 HTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNT 600



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           H+    + +Y+  G +  AR LFDK+ + +  TW  +I     HG   EAI+ +N    +
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 446 K--KLDHLSFTAVLTAC 460
              + D L   +V  AC
Sbjct: 72  NCVEPDKLLLLSVAKAC 88


>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/476 (33%), Positives = 271/476 (56%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T L+ FY +   I +A M+FD +   ++  W  L  
Sbjct: 269 GVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLIS 328

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+ +   M ++ LK +   + +++ A     ++  G+++    ++HS  T
Sbjct: 329 GYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDT 388

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+KCGS+  AKKVFD  VEKD++  N +++ Y Q GL+ EAL L  E+ 
Sbjct: 389 DIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSGEALRLFYEMQ 448

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G+     ++F  M++ G+ P+++SWT++++G+V N C++
Sbjct: 449 LESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSE 508

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M   G  P + +I+  L A A+ A++  G+ IHG  I  +     + + ++L
Sbjct: 509 EAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIETSL 568

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG I++A  +F          +N+MI   A +G   EAI L+  +E+   K D 
Sbjct: 569 VDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAIALYRSLEDMGIKPDS 628

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT++L+AC H G ++    +F  M  K+ + P  EHY  MVDLL  AG   +A  +I+
Sbjct: 629 VTFTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDLLASAGETEKAIRLIE 688

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  +  +L+ +C      EL E  ++HL E EPE++ N + +++ YA  G
Sbjct: 689 EMPYKPDARMIQSLVASCNKQHKTELVEYLSRHLLESEPENSGNYVTISNAYAVEG 744



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 153/539 (28%), Positives = 259/539 (48%), Gaps = 50/539 (9%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +GK +HA+++ +G   AR   I TKL+ FY +C  +
Sbjct: 44  RNXRIGPEIYGEXLQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDAL 103

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A ++F ++   N+  W A+ G   R G  + A+  F EM    +  + FV+P+V KAC
Sbjct: 104 EXAEVIFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKAC 163

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V+K       FV SSL DMY KCG ++ A+KVFDE+ E+++VA N
Sbjct: 164 GALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWN 223

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK----------------S 293
           A++ GYVQ G+  EA+ L  ++    V+P  VT +T +S  +                 +
Sbjct: 224 ALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMVGVEEGKQSHAIAIVN 283

Query: 294 G---DQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTF 338
           G   D ++ + L       G+            + DVV+W  +ISG V     ++A    
Sbjct: 284 GLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMS 343

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++ A A   N++ GKE+    I   ++ D+ + S  +DMYAKC
Sbjct: 344 QLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKC 403

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD   E++ + WN+++   A  G   EA+ LF +M+ E    + +++  ++
Sbjct: 404 GSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSGEALRLFYEMQLESVPPNVITWNLII 463

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V   + +F  MQ    I P    +  M++ + + G   EA   ++ M     
Sbjct: 464 LSLLRNGEVNEAKEMFLQMQSS-GISPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGL 522

Query: 515 EPDLFVWGALLGACKNHGNIELAEIA-------AKHLSELEPESAANNMLLTDLYANAG 566
            P+ F     L A  N  ++              +H S +  E++     L D+YA  G
Sbjct: 523 RPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIETS-----LVDMYAKCG 576



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 222/466 (47%), Gaps = 43/466 (9%)

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
           HH          +  HR      +  + G  +EA+++  EM  +  +    +    L+ C
Sbjct: 5   HHDDQALPPSSTSYFHR----VSSLCKNGEIKEALSLVTEMDFRNXRIGPEIYGEXLQGC 60

Query: 190 GHLSDIGTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
            +  D+ TG++IH+ +LK+   +  + ++ + L+  Y+KC ++E A+ +F ++  +++ +
Sbjct: 61  VYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFS 120

Query: 248 MNAMVSGYVQRGLATEAL----NLVEEIGTPR--VKPNV------VTWNTLISGFS---- 291
             A++    + GL   AL     ++E    P   V PNV      + W+    G      
Sbjct: 121 WAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVI 180

Query: 292 KSG--DQVMVSKLFQLMRAK-GV------------EPDVVSWTSVISGLVHNFCNDEAFD 336
           K+G  D V V+     M  K GV            E +VV+W +++ G V N  N+EA  
Sbjct: 181 KAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIR 240

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M  +G  PT  T+S+ L A A+   +  GK+ H  AIV G+E D  + ++L++ Y 
Sbjct: 241 LFSDMRKEGVEPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYC 300

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTA 455
           K G I  A  +FD+M +++ VTWN +I G    G  ++AI +   M  E+ K D ++ + 
Sbjct: 301 KVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLST 360

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           +++A      ++ G+ +      ++ +       +  +D+  + G + +A ++  + + E
Sbjct: 361 LMSAAARTENLKFGKEV-QCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDS-TVE 418

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
            DL +W  LL A    G   L+  A +   E++ ES   N++  +L
Sbjct: 419 KDLILWNTLLAAYAQSG---LSGEALRLFYEMQLESVPPNVITWNL 461



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 2/209 (0%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I T L+  Y +C +I+ A  +F     + +  + A+  AYA  G  +EA+ ++  +   G
Sbjct: 564 IETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAIALYRSLEDMG 623

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           +K +     S+L AC H  DI     + + +VLKH           ++D+ +  G  EKA
Sbjct: 624 IKPDSVTFTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDLLASAGETEKA 683

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
            ++ +EM  K    M   +     +   TE +  +          N   + T+ + ++  
Sbjct: 684 IRLIEEMPYKPDARMIQSLVASCNKQHKTELVEYLSRHLLESEPENSGNYVTISNAYAVE 743

Query: 294 GDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           G    V K+ ++M+AKG++     SW  +
Sbjct: 744 GSWDEVVKMREMMKAKGLKKKPGCSWIQI 772


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 177/509 (34%), Positives = 270/509 (53%), Gaps = 44/509 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L S   +HAQ++ + L +   +A KLI  ++ C+++  A  +F+ +P  N+H + ++  A
Sbjct: 34  LDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRA 93

Query: 154 YARRGYHQE-AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           +A    H       F +M   GL  + F  P +LKAC   S +     IH+ V K  F  
Sbjct: 94  HAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYG 153

Query: 213 DAFVVSSLIDMYSKCGS---------------------------------VEKAKKVFDE 239
           D FV +SLID YS+CGS                                 +E A K+FDE
Sbjct: 154 DIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDE 213

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M E+D+V+ N M+ GY + G    A  L E +     + N+V+W+T++ G+SK GD  M 
Sbjct: 214 MPERDMVSWNTMLDGYAKAGEMDRAFELFERM----PQRNIVSWSTMVCGYSKGGDMDMA 269

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             LF    AK    +VV WT++I+G        EA + + +M   G  P    + SIL A
Sbjct: 270 RVLFDRCPAK----NVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAA 325

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK-MSERNTVT 418
           CA +  +  GK IH             V +A +DMYAKCG +  A  +F   M++++ V+
Sbjct: 326 CAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVS 385

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNSMI G A HG+ ++A+ELF++M  E  + D  +F  +L AC H GLV  G++ F  M+
Sbjct: 386 WNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSME 445

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y I+P+ EHY CM+DLLGR G L EA+ ++++M  EP+  + G LL AC+ H +++ A
Sbjct: 446 KVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFA 505

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
               + L ++EP    N  LL+++YA AG
Sbjct: 506 RAVCEQLFKVEPTDPGNYSLLSNIYAQAG 534



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 177/398 (44%), Gaps = 50/398 (12%)

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
           S++ +  +IH+ VLK +   D FV   LI  +S C  +  A  VF+ +   ++   N+++
Sbjct: 32  SNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSII 91

Query: 253 SGYV-----------------QRGLATEALN---LVEEIGTPRVKP-------------- 278
             +                  + GL  +      L++    P   P              
Sbjct: 92  RAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGF 151

Query: 279 --NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             ++   N+LI  +S+ G   +   +   +  K  E DVV+W S+I GLV     + A  
Sbjct: 152 YGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMK--ERDVVTWNSMIGGLVRCGELEGACK 209

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F EM  +       + +++L   A A  M R  E+         + ++   S +V  Y+
Sbjct: 210 LFDEMPERDM----VSWNTMLDGYAKAGEMDRAFEL----FERMPQRNIVSWSTMVCGYS 261

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTA 455
           K G +  AR LFD+   +N V W ++I G A  G+  EA EL+ +MEE   + D     +
Sbjct: 262 KGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLIS 321

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           +L AC   G++ LG+R+   M+ +++    T+     +D+  + G L  A+++   M  +
Sbjct: 322 ILAACAESGMLGLGKRIHASMR-RWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAK 380

Query: 516 PDLFVWGALLGACKNHGNIELA-EIAAKHLSE-LEPES 551
            D+  W +++     HG+ E A E+ ++ + E  EP++
Sbjct: 381 KDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDT 418


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/556 (32%), Positives = 286/556 (51%), Gaps = 68/556 (12%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           +AY   I+        + GK LHA+L++S +     + +KLI+FY++  +I  A  +F +
Sbjct: 4   SAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGK 63

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEM---HIQGLKQNIFVIPSVLKACGHL-SD 194
           IP+ NI  W AL  +Y     H + + +F  +   +   +K + F +   LKA   L S+
Sbjct: 64  IPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSN 123

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
            G  +++HS +L+     D FVV++LI  YS+C  +  A+ +FD M E+DIV+ NAM++G
Sbjct: 124 SGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAG 183

Query: 255 YVQRGLATEALNLVE-EIGTPRVKPNVVT------------------------------- 282
           Y Q G   +   L    + +  VKPN +T                               
Sbjct: 184 YSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKM 243

Query: 283 ----WNTLISGFSKSGDQVMVSKLFQLMRAKGV--------------------------- 311
               WN +I  ++K G      +LF+ M  K                             
Sbjct: 244 DVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQE 303

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
            P + +W +VISGLV N   + A D F+ M S G  P + T++SILP  +  + ++ GKE
Sbjct: 304 RPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKE 363

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           IHG AI    + +++V +A++D YAKCG++  A+ +FD++  R+ + W S+I   A HG 
Sbjct: 364 IHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGD 423

Query: 432 CDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
            + A+ LF +M     + D ++FT+VL AC H G ++   ++FN++  +Y I P  EHYA
Sbjct: 424 ANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYA 483

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMV +L RAG+L++A E I  M  EP   VWGALL      G++EL +     L E+EPE
Sbjct: 484 CMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPE 543

Query: 551 SAANNMLLTDLYANAG 566
           +  N +++ +LY+ +G
Sbjct: 544 NTGNYVIMANLYSQSG 559



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 144/288 (50%), Gaps = 9/288 (3%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           ++ A  LF E  +  +  W A+     +    + AV +F  M   G + N   + S+L  
Sbjct: 292 VNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPV 351

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
             H S +  G++IH   +++++  + +V +++ID Y+KCG +  A+ VFD++  + ++A 
Sbjct: 352 FSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAW 411

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-LMR 307
            +++S Y   G A  AL+L  E+ T  ++P+ VT+ ++++  + SG+     K+F  L+ 
Sbjct: 412 TSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLP 471

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
             G++P V  +  ++  L       +A +   +M  +   PT+    ++L   + A ++ 
Sbjct: 472 EYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLE---PTAKVWGALLNGASVAGDVE 528

Query: 368 RGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            GK +      +  E  G+  +   + ++Y++ G   +A T+ D M E
Sbjct: 529 LGKYVFDRLFEIEPENTGNYVI---MANLYSQSGRWKDADTIRDLMKE 573



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H   I +   R   +AT +I  Y +C  +H A+++FD+I   ++  W ++  A
Sbjct: 358 LKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISA 417

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA  G    A+++F+EM   G++ +     SVL AC H  ++    KI +++L   +G  
Sbjct: 418 YAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPE-YGIQ 476

Query: 214 AFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALNL 267
             V   + ++ + S+ G +  A +   +M +E       A+++G    G   L     + 
Sbjct: 477 PLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDR 536

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
           + EI  P    N V    L S   +  D   +  L + +R K +  +  SW    SG + 
Sbjct: 537 LFEI-EPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGN--SWIET-SGGMQ 592

Query: 328 NFC 330
            FC
Sbjct: 593 RFC 595


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 185/547 (33%), Positives = 281/547 (51%), Gaps = 76/547 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIA 149
           + LQ+ K +H+Q+I +GL       +KLI F   +   ++ +A  LF  I   N   W  
Sbjct: 39  KTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNH 98

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +    +       A+  +  M   G + N +  PS+ K+C  +     G+++H+ VLK  
Sbjct: 99  MIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLG 158

Query: 210 FGTDAFVVSSLIDMYSKCGSV-------------------------------EKAKKVFD 238
              +AFV +SLI+MY++ G +                               ++A+++FD
Sbjct: 159 LEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFD 218

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT---------------- 282
           E+  +D+V+ NAM+SGY Q G   EA+   EE+   +V PNV T                
Sbjct: 219 EIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQ 278

Query: 283 -------W-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
                  W             N LI  + K GD    S LF+ ++ K    +VVSW  +I
Sbjct: 279 LGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDK----NVVSWNVMI 334

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI--VMG 380
            G  H  C  EA   F+ M+     P   T  SILPACA+   +  GK +H      +  
Sbjct: 335 GGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKS 394

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           ++  + + ++L+DMYAKCG ++ A+ +FD M+ ++  TWN+MI G A HG+ D A+ LF+
Sbjct: 395 MKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFS 454

Query: 441 QMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M     + D ++F  VLTAC H GL+ LG+R F+ M + YK+ P+  HY CM+DL GRA
Sbjct: 455 RMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRA 514

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G   EA  ++K M  +PD  +W +LLGAC+ H  IELAE  AKHL ELEPE+ +  +LL+
Sbjct: 515 GLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLS 574

Query: 560 DLYANAG 566
           ++YA AG
Sbjct: 575 NIYAGAG 581



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 176/441 (39%), Gaps = 75/441 (17%)

Query: 60  FIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKL 119
           F+   Y + +IS     +   +    +   + R    GK +HA ++  GL     + T L
Sbjct: 110 FLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSL 169

Query: 120 ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH------------------- 160
           I  Y +   + +AR++FD+    +   + AL   YA +G+                    
Sbjct: 170 INMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWN 229

Query: 161 ------------QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL-SDIGTGEKIHSLVLK 207
                       +EA+  F EM    +  N+  + SVL AC    S +  G  + S +  
Sbjct: 230 AMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIED 289

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
              G++  +V+ LIDMY KCG +E+A  +F+++ +K++V+ N M+ GY       EAL L
Sbjct: 290 RGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGL 349

Query: 268 VEEIGTPRVKPNVVT-------------------------------------WNTLISGF 290
              +    + PN VT                                     W +LI  +
Sbjct: 350 FRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMY 409

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +K GD  +  ++F  M  K     + +W ++ISG   +   D A   F  M S+GF P  
Sbjct: 410 AKCGDLAVAKRIFDCMNTKS----LATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDD 465

Query: 351 ATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
            T   +L AC  A  +  G+      I    V   L     ++D++ + G   EA TL  
Sbjct: 466 ITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVK 525

Query: 410 KMSER-NTVTWNSMIFGCANH 429
            M  + +   W S++  C  H
Sbjct: 526 NMEMKPDGAIWCSLLGACRIH 546


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 169/532 (31%), Positives = 282/532 (53%), Gaps = 36/532 (6%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLI-VSGLARLTQIATKLITFYTECQ 127
           ++   F      +S+ ++     + L +GK +H QL+ V     +  + T L+  Y +C 
Sbjct: 133 LMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNV--VLTGLLDMYAKCG 190

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
            I  A  +F++I   N+  W ++   Y +    +E + +F+ M    +  N +   +++ 
Sbjct: 191 EIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIM 250

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC  LS +  G+  H  ++K      + +V+SL+DMY KCG +  A++VF+E    D+V 
Sbjct: 251 ACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVM 310

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV----- 297
             AM+ GY   G   EAL+L +++    +KPN VT  +++SG       + G  V     
Sbjct: 311 WTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSI 370

Query: 298 ---------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDT 337
                          M +K +Q   AK V     E D+V+W S+ISG   N    EA   
Sbjct: 371 KVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFL 430

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMY 395
           F  M S+   P   T++S+  ACAS  ++  G  +H  ++ +G      +HV +AL+D Y
Sbjct: 431 FHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFY 490

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           AKCG    AR +FD + E+NT+TW++MI G    G    ++ELF +M ++++K +  +FT
Sbjct: 491 AKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFT 550

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           ++L+AC H G+V  G++ F+ M + Y   P T+HY CMVD+L RAG L +A ++I+ M  
Sbjct: 551 SILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPI 610

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +PD+  +GA L  C  H   +L EI  K + +L P+ A+  +L+++LYA+ G
Sbjct: 611 QPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDG 662



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 227/467 (48%), Gaps = 38/467 (8%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           H  L  +GL     IATKL++ Y        AR++FD+IP+ + + W  +   Y      
Sbjct: 64  HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKES 123

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSS 219
            E V ++  +   G + +  V    LKAC  L D+  G+KIH  ++K  SF  D  V++ 
Sbjct: 124 VEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSF--DNVVLTG 181

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+DMY+KCG ++ A KVF+++  +++V   +M++GYV+  L  E L L   +    V  N
Sbjct: 182 LLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGN 241

Query: 280 VVTWNTLISGFS----------------KSGDQV----------MVSKLFQLMRAKGV-- 311
             T+ TLI   +                KSG ++          M  K   +  A+ V  
Sbjct: 242 EYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFN 301

Query: 312 ---EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
                D+V WT++I G  HN   +EA   F++M      P   TI+S+L  C    N+  
Sbjct: 302 EHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLEL 361

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           G+ +HG +I +G+  D +V +ALV MYAKC    +A+ +F+  SE++ V WNS+I G + 
Sbjct: 362 GRSVHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQ 420

Query: 429 HGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           +G   EA+ LF++M  E    + ++  ++ +AC  +G + +G  L     +   +   + 
Sbjct: 421 NGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSV 480

Query: 488 HYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           H    ++D   + G    A  +  T+  E +   W A++G     G+
Sbjct: 481 HVGTALLDFYAKCGDPQSARLIFDTIE-EKNTITWSAMIGGYGKQGD 526



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 127/280 (45%), Gaps = 10/280 (3%)

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF------QLMRAKGVEPDVVSW 318
           L+    I + R    V+T N L+   S +   V +   F      +L+  +  EPD   W
Sbjct: 51  LSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLW 110

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
             ++     N  + E    +  ++  GF       S  L AC    ++  GK+IH C +V
Sbjct: 111 KVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH-CQLV 169

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
                D  V + L+DMYAKCG I  A  +F+ ++ RN V W SMI G   +  C+E + L
Sbjct: 170 KVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVL 229

Query: 439 FNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           FN+M E   L +  ++  ++ AC  +  +  G + F+    K  I   +     ++D+  
Sbjct: 230 FNRMRENNVLGNEYTYGTLIMACTKLSALHQG-KWFHGCLVKSGIELSSCLVTSLLDMYV 288

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + G ++ A  +    S   DL +W A++    ++G++  A
Sbjct: 289 KCGDISNARRVFNEHS-HVDLVMWTAMIVGYTHNGSVNEA 327



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 96/205 (46%), Gaps = 13/205 (6%)

Query: 334 AFDTFKEML----SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           +F T KE++    + G     A  S      +   N+   ++ HG     G+ GD+ + +
Sbjct: 21  SFTTIKELILTEENDGSSLHYAASSPCFLLLSKCTNIDSLRQSHGVLTGNGLMGDISIAT 80

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN-QMEERKKL 448
            LV +Y   G+  +AR +FD++ E +   W  M+     +    E ++L++  M+   + 
Sbjct: 81  KLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRY 140

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAY 506
           D + F+  L AC  +  ++ G+++   + +    +P  ++     ++D+  + G +  A+
Sbjct: 141 DDIVFSKALKACTELQDLDNGKKIHCQLVK----VPSFDNVVLTGLLDMYAKCGEIKSAH 196

Query: 507 EMIKTMSTEPDLFVWGALL-GACKN 530
           ++   + T  ++  W +++ G  KN
Sbjct: 197 KVFNDI-TLRNVVCWTSMIAGYVKN 220


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 169/477 (35%), Positives = 265/477 (55%), Gaps = 13/477 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ--NIHHARMLFDEIPKTNIHRWIAL 150
           +LQ    LHA ++ SG  +   ++  L+  Y      N   A  +F  IP  N+  W  +
Sbjct: 45  SLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
                      +A+  +  M I   + N F  P++ KAC     +  G +IH  V+KH  
Sbjct: 105 IKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI 163

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           G+D  + S+ I MY+  G +E A+K+F    E D+V  N M+ GY++ G+   A  L  +
Sbjct: 164 GSDVHIKSAGIQMYASFGRLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKGLFAQ 222

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
           +       N+ +WN +I+G +K G+     KLF  M     E D +SW+S++ G +    
Sbjct: 223 MPVK----NIGSWNVMINGLAKGGNLGDARKLFDEMS----ERDEISWSSMVDGYISAGR 274

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA + F++M  +   P    +SS+L AC++   + +G+ +H       ++ D  + +A
Sbjct: 275 YKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTA 334

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLD 449
           L+DMYAKCG +     +F++M ER   TWN+MI G A HG  ++A+ELF++++E R K +
Sbjct: 335 LLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPN 394

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++   VLTAC H G V+ G R+F  M+E Y + P  EHY CMVDLLGR+G  +EA ++I
Sbjct: 395 GITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLI 454

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +M  +P+  VWGALLGAC+ HGN +LAE   K L ELEP+++   +LL+++YA  G
Sbjct: 455 NSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVG 511



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 15/245 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+ +HA L  + +     + T L+  Y +C  +     +F+E+ +  I  W A+ G
Sbjct: 309 AIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIG 368

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G  ++A+ +F ++    +K N   +  VL AC H   +  G +I    ++  +G 
Sbjct: 369 GLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ-TMREFYGV 427

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA-LNLVE 269
           D  +     ++D+  + G   +A+ + + M  K     NA V G +          +L E
Sbjct: 428 DPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKP----NAAVWGALLGACRIHGNFDLAE 483

Query: 270 EIGTP--RVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI--SG 324
            +G     ++P       L+S  ++K G    VSK+ +LM+ +G++   V   S++  +G
Sbjct: 484 RVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIK--TVPGVSIVDLNG 541

Query: 325 LVHNF 329
            VH F
Sbjct: 542 TVHEF 546


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 180/544 (33%), Positives = 278/544 (51%), Gaps = 71/544 (13%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           +  AL  G  +H  ++  G  R   +   LI FY EC  I   R +FD++ + N+  W +
Sbjct: 151 KSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTS 210

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L G YA+RG ++EAV++F EM   G++ N   +  V+ AC  L D+  GE++ + + +  
Sbjct: 211 LIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELE 270

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKK-------------------------------VFD 238
              +A +V++L+DMY KCG+++KA+K                               V  
Sbjct: 271 LEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLG 330

Query: 239 EMV-------------------EKDIVAMNAMVSGYVQRG-------LATEALNLVEEIG 272
           EM+                   E D V+      GYV R        +    +N+  + G
Sbjct: 331 EMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCG 390

Query: 273 TPRVKPNV---------VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
              +   V         V+WN+LI+GF ++GD     K+F  M     + D+VSW ++I 
Sbjct: 391 KQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMP----DSDLVSWNTMIG 446

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
            LV      EA + F+ M S+G      T+  +  AC     +   K IHG      +  
Sbjct: 447 ALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHF 506

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM- 442
           D+H+ +ALVDM+A+CG    A  +F+KM +R+   W + I   A  G    AIELF++M 
Sbjct: 507 DMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEML 566

Query: 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           ++  K D + F A+LTA  H GLVE G  +F  M++ Y I P+  HY CMVDLLGRAG L
Sbjct: 567 QQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLL 626

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
           +EA  +I +M  EP+  +WG+LL AC+ H N+++A  AA+ +SEL+PE    ++LL+++Y
Sbjct: 627 SEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIY 686

Query: 563 ANAG 566
           A+AG
Sbjct: 687 ASAG 690



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 134/507 (26%), Positives = 232/507 (45%), Gaps = 73/507 (14%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLFDEIPKTNI-----HRWIA 149
           K LH+Q+  +GL       T LI+  TE    +++ +A+   +   + N      + + +
Sbjct: 50  KQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSS 109

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   ++  G   +A+ VF ++   G   + F  P VL AC   + +  G ++H  ++K  
Sbjct: 110 LIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMG 169

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F  D FV +SLI  Y +CG ++  ++VFD+M E+++V+  +++ GY +RG   EA++L  
Sbjct: 170 FERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFF 229

Query: 270 EIGTPRVKPNVVTWNTLISGFSK-----SGDQV--------------MVSKLFQLMRAKG 310
           E+    ++PN VT   +IS  +K      G+QV              MV+ L  +    G
Sbjct: 230 EMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCG 289

Query: 311 ------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
                       V+ ++V + +++S  V      E      EML  G  P   T+ S + 
Sbjct: 290 AIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVS 349

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC+   ++  GK  HG  +  G+EG  +V +A+++MY KCG    A  +FD+M  +  V+
Sbjct: 350 ACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVS 409

Query: 419 WNSMIFGCANHGYCD-------------------------------EAIELFNQME-ERK 446
           WNS+I G   +G  +                               EAIELF  M+ E  
Sbjct: 410 WNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGI 469

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
             D ++   V +AC ++G ++L + +   +++K  I         +VD+  R G    A 
Sbjct: 470 TADKVTMVGVASACGYLGALDLAKWIHGYIKKK-DIHFDMHLGTALVDMFARCGDPQSAM 528

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGN 533
           ++   M  + D+  W A +GA    GN
Sbjct: 529 QVFNKM-VKRDVSAWTAAIGAMAMEGN 554


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 173/479 (36%), Positives = 259/479 (54%), Gaps = 51/479 (10%)

Query: 135 LFDE-IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
           LF++   +T+++ W +L    AR G   E++  F  M    +K N    P  +K+C  L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
           D+ +G++ H   L   F +D FV S+LIDMYSKCG +  A+ +FDE+  ++IV   ++++
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 254 GYVQRGLATEALNLV------------EEIGTP--------------RVKPNVVTW---- 283
           GYVQ   A EAL +             EE+GT               RV    V+     
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 284 --------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                         NTL+  ++K G+  +  K+F  M     E DVVSW S+I+    N 
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDM----AEKDVVSWNSMIAVYAQNG 272

Query: 330 CNDEAFDTFKEMLSQGFCP-TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
            + +AF+ F  ML  G       T+S++L ACA    +R G  +H   I MG   ++ + 
Sbjct: 273 LSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMA 332

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           ++++DMY KCG    AR  FD M E+N  +W +MI G   HG+  EA+++F QM     K
Sbjct: 333 TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            ++++F +VL AC H G +E G R FN M  +Y + P  EHY CMVDLLGRAG + EAY 
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYN 452

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +IK+M    D  +WG+LL AC+ H ++ELAEI+A+ L +L+P +    +LL ++YA+AG
Sbjct: 453 LIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAG 511



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 178/384 (46%), Gaps = 53/384 (13%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L SGK  H Q +V G      +++ LI  Y++C  + +AR+LFDEIP+ NI  W +L   
Sbjct: 98  LNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITG 157

Query: 154 YARRGYHQEAVTVFHEMHIQ---------GLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
           Y +     EA+ VF E   +         G   +   + SVL AC  +S+    E +H +
Sbjct: 158 YVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGV 217

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            +K        V ++L+D Y+KCG V  ++KVFD+M EKD+V+ N+M++ Y Q GL+T+A
Sbjct: 218 AIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDA 277

Query: 265 LNLVEEI-----------------------GTPRVK-------------PNVVTWNTLIS 288
             +   +                       G  RV               NV+   ++I 
Sbjct: 278 FEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIID 337

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFC 347
            + K G   M    F  M+    E +V SWT++I+G  +H F   EA D F +M+  G  
Sbjct: 338 MYCKCGQAEMARNAFDGMK----EKNVRSWTAMIAGYGMHGFAR-EALDVFYQMIWAGVK 392

Query: 348 PTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
           P   T  S+L AC+ A  +  G +  +  +    VE  +     +VD+  + G+I EA  
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYN 452

Query: 407 LFDKMS-ERNTVTWNSMIFGCANH 429
           L   M   R+ V W S++  C  H
Sbjct: 453 LIKSMKVRRDFVLWGSLLAACRIH 476



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G  LH Q+I  G      +AT +I  Y +C     AR  FD + + N+  W A+  
Sbjct: 309 ALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIA 368

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G+ +EA+ VF++M   G+K N     SVL AC H   +  G +  +  + H +  
Sbjct: 369 GYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFN-AMSHEYNV 427

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS 253
           +  V     ++D+  + G +++A  +   M V +D V   ++++
Sbjct: 428 EPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLA 471


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 168/510 (32%), Positives = 268/510 (52%), Gaps = 40/510 (7%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            A   GK++H  ++ SG+     +A  L+  Y  C +I  A+ +F+     +I  W ++  
Sbjct: 501  AYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIA 560

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             +A+ G ++ A  +F EM  +GL+ +     SVL  C +   +  G +IH L+++     
Sbjct: 561  GHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            D  + ++LI+MY +CGS++ A +VF  +  +++++  AM+ G+  +G   +A  L  ++ 
Sbjct: 621  DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 273  TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
                KP   T+                                   N LIS +SKSG   
Sbjct: 681  NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMT 740

Query: 298  MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               K+F  M  +    D++SW  +I+G   N     A     +M  QG      +  SIL
Sbjct: 741  DARKVFDKMPNR----DIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSIL 796

Query: 358  PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             AC+S + +  GK +H   +   ++GD+ V +AL+ MYAKCG + EA+ +FD  +E+N V
Sbjct: 797  NACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVV 856

Query: 418  TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            TWN+MI   A HG   +A++ FN M+ E  K D  +FT++L+AC H GLV  G R+F+ +
Sbjct: 857  TWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSL 916

Query: 477  QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            + ++ + P  EHY C+V LLGRAGR  EA  +I  M   PD  VW  LLGAC+ HGN+ L
Sbjct: 917  ESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVAL 976

Query: 537  AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            AE AA +  +L   + A  +LL+++YA AG
Sbjct: 977  AEHAANNALKLNARNPAVYVLLSNVYAAAG 1006



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 244/477 (51%), Gaps = 42/477 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL +G+++H+ +   G +   QI   LI+ Y  C ++  AR LF+ +PK ++  W A+ 
Sbjct: 399 KALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAII 458

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YARR    EA+ ++ +M  +G+K        +L AC + S    G+ IH  +L+    
Sbjct: 459 AGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIK 518

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  + ++L++MY +CGS+ +A+ VF+    +DI++ N+M++G+ Q G    A  L  E+
Sbjct: 519 SNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEM 578

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
               ++P+ +T+                                   N LI+ + + G  
Sbjct: 579 KKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSL 638

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F  +R +    +V+SWT++I G      + +AF+ F +M + GF P  +T SSI
Sbjct: 639 QDAYEVFHSLRHR----NVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSI 694

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L AC S+A +  GK++    +  G E D  V +AL+  Y+K G +++AR +FDKM  R+ 
Sbjct: 695 LKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDI 754

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           ++WN MI G A +G    A++   QM+E+   L+  SF ++L AC     +E G+R+   
Sbjct: 755 MSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAE 814

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +  K K+       A ++ +  + G L EA E+     TE ++  W A++ A   HG
Sbjct: 815 IV-KRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNF-TEKNVVTWNAMINAYAQHG 869



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 247/501 (49%), Gaps = 40/501 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHH 131
           R    + AAY + ++   R R+L   K +HAQ++ +G+     ++  LI  Y +C+++  
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD 135

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  +F ++P+ ++  W +L   YA++G+ ++A  +F EM   G   +     S+L AC  
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCS 195

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
            +++  G+KIHS +++  +  D  V +SL++MY KC  +  A++VF  +  +D+V+ N M
Sbjct: 196 PAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTM 255

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
           +  Y Q+    E + L  ++ +  + P+ VT+  L+  F+         ++ +L   +G+
Sbjct: 256 LGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGL 315

Query: 312 -------------------------------EPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
                                          + DVV + ++I+ L  +   +EAF+ + +
Sbjct: 316 NSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQ 375

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M S G      T  S+L AC+++  +  G+ IH     +G   D+ + ++L+ MYA+CG 
Sbjct: 376 MRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGD 435

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
           +  AR LF+ M +R+ ++WN++I G A      EA++L+ QM+ E  K   ++F  +L+A
Sbjct: 436 LPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSA 495

Query: 460 CCHVGLVELGQRLFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           C +      G+    M+ E   +  I         ++++  R G + EA  + +      
Sbjct: 496 CTNSSAYSDGK----MIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR- 550

Query: 517 DLFVWGALLGACKNHGNIELA 537
           D+  W +++     HG+ E A
Sbjct: 551 DIISWNSMIAGHAQHGSYEAA 571



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 237/475 (49%), Gaps = 42/475 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H+++I +G  R  ++   L+  Y +C+++  AR +F  I + ++  +  + G 
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGL 258

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA++ Y +E + +F +M  +G+  +     ++L A    S +  G++IH L +     +D
Sbjct: 259 YAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSD 318

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L  M+ +CG V  AK+  +   ++D+V  NA+++   Q G   EA     ++ +
Sbjct: 319 IRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRS 378

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
             V  N  T+                                   N+LIS +++ GD   
Sbjct: 379 DGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPR 438

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             +LF  M  +    D++SW ++I+G        EA   +K+M S+G  P   T   +L 
Sbjct: 439 ARELFNTMPKR----DLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLS 494

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC +++    GK IH   +  G++ + H+ +AL++MY +CG I EA+ +F+    R+ ++
Sbjct: 495 ACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIIS 554

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNSMI G A HG  + A +LF +M +E  + D ++F +VL  C +   +ELG+++  ++ 
Sbjct: 555 WNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLII 614

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           E   +         ++++  R G L +AYE+  ++    ++  W A++G   + G
Sbjct: 615 ES-GLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMIGGFADQG 667



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 101/195 (51%), Gaps = 10/195 (5%)

Query: 339 KEMLSQGFCP-----TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           +E LS  + P       A    ++  C    ++   K IH   +  GV  D+ + + L++
Sbjct: 66  REDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLIN 125

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLS 452
           MY KC  +S+A  +F KM  R+ ++WNS+I   A  G+  +A +LF +M+    +   ++
Sbjct: 126 MYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKIT 185

Query: 453 FTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           + ++LTACC    +E G+++ + +++  Y+  PR ++   ++++ G+   L  A ++   
Sbjct: 186 YISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQN--SLLNMYGKCEDLPSARQVFSG 243

Query: 512 MSTEPDLFVWGALLG 526
           +    D+  +  +LG
Sbjct: 244 IYRR-DVVSYNTMLG 257


>gi|302141863|emb|CBI19066.3| unnamed protein product [Vitis vinifera]
          Length = 521

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 262/482 (54%), Gaps = 13/482 (2%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R RA + G+ LHA +I  G+      A  L+  Y +   +  AR LFDE  + N+  W  
Sbjct: 15  RFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTT 74

Query: 150 LTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           +  AY+  G    A+  + +M   +    N F+  +VLKACG + D+ +G+ IH  V + 
Sbjct: 75  MISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRA 134

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
           + G D  ++++L+DMY KCGS+  A+KVFD+++     + N M+SGY + GL  EA+NL 
Sbjct: 135 NLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLF 194

Query: 269 EEIGTPRVKPNVVTWNTLISGFS-----KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
            ++     +P+ V+WN++I+GF       + D  +   L    R    E D+V W+S+IS
Sbjct: 195 YQMP----EPDTVSWNSIIAGFGILIDLYANDGKIKDALRLFYRLP--EKDIVVWSSLIS 248

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
                  N   F  F++M++         ISS+L AC+S   +  GK++H   +  G E 
Sbjct: 249 WCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYES 308

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +    ++L+D+YAKCG I +   LF   SER+TV +  +I GC  +G   EA+  F +M 
Sbjct: 309 ERITVTSLIDLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMI 368

Query: 444 ERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           E   K + ++F  VL+AC H GLVE    +F  M+ +YK+ P  EHY C+V+LL +AG  
Sbjct: 369 ELGLKPNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCF 428

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            EA E+I  M  EPD  +W +LLGAC  H   EL    A+ L    PE  +  + L+++Y
Sbjct: 429 KEAEELIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVY 488

Query: 563 AN 564
           A 
Sbjct: 489 AT 490



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 22/227 (9%)

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           I S++  C      R G+ +H   I +GV  D+   + L+ MY     + +AR LFD+  
Sbjct: 6   IVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETL 65

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK--LDHLSFTAVLTACCHVGLVELGQ 470
           ERN  TW +MI   ++ G  D A++ + QM E K    +   ++AVL AC  VG +E G+
Sbjct: 66  ERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGK 125

Query: 471 ----RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
               R+F        ++  T     ++D+  + G L+ A ++   +   P    W  ++ 
Sbjct: 126 LIHGRVFRANLGFDTVLMNT-----LLDMYVKCGSLSSARKVFDDILC-PSSTSWNTMIS 179

Query: 527 ACKNHGNIELAEIAAKHLSEL-EPESAANNM------LLTDLYANAG 566
               +G   L E A     ++ EP++ + N       +L DLYAN G
Sbjct: 180 G---YGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFGILIDLYANDG 223


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/505 (34%), Positives = 272/505 (53%), Gaps = 38/505 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++ K LHA ++ S L     + T LI  Y    +I HA  LF     +N+  W  +  A
Sbjct: 17  LEALKSLHASILKSHLH--PHLCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRA 74

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           ++   + + ++ ++  M   G++   F  P +LKACG L+D   G + H+ V+   + +D
Sbjct: 75  FSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESD 134

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV +SL+ MY + G  + +++VF+ M E+++V+ ++MV  Y   G   E L L   +  
Sbjct: 135 VFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLN 194

Query: 274 PRVKPN----------------------VVTWNTLISG----------FSKSGDQVMVSK 301
             + PN                      VV  N L S           +++ G   +  +
Sbjct: 195 EGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARR 254

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            F  +    ++ D+V+WTS+I   V       A + FK+M   G  P S T+ S++ A +
Sbjct: 255 FFYGI----LDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVS 310

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A+ +  + +HG       +  + + +A++D+Y KCG +  AR  FD+MS RN ++W++
Sbjct: 311 NLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWST 370

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           MI G   HG+  EA+ LF+QM+   K DH++F  VL+AC H GL+  G   F  M   + 
Sbjct: 371 MISGYGMHGHGREALCLFDQMKASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFG 430

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + PRTEHYACMVDLLGRAGRL+EA   I+ M   PD  VWGALLGAC+ H N+E AE AA
Sbjct: 431 VTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAA 490

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           +HL  L+ E+    +LL+++YA++G
Sbjct: 491 RHLFNLDAENPGRYILLSNIYASSG 515



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 246 VAMNAMVSGYVQRGLATEAL-NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           + M A     +++ +  EAL +L   I    + P++ T  +LI+ ++  G       LF 
Sbjct: 1   MGMKANCIALIKQCVTLEALKSLHASILKSHLHPHLCT--SLIAQYASLGSISHAYALFS 58

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
              +     +V  W  +I    +   +  +   +  ML  G   T+ T   +L AC   A
Sbjct: 59  TSHSS----NVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLA 114

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           +   G   H   +V G E D+ V ++L+ MY + G    +R +F++M ERN V+W+SM+ 
Sbjct: 115 DFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVG 174

Query: 425 GCANHGYCDEAIELFNQM 442
             A++G  +E + LF +M
Sbjct: 175 AYAHNGRYEEGLLLFWRM 192



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 4/150 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           + Q  + +H  +  S       + T +I  Y +C N+ +AR  FD +   N+  W  +  
Sbjct: 314 SFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMIS 373

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G+ +EA+ +F +M    +K +      VL AC H   I  G +     +   FG 
Sbjct: 374 GYGMHGHGREALCLFDQMKAS-IKPDHIAFVMVLSACSHGGLIAEGWECFK-AMNRDFGV 431

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
                  + ++D+  + G + +A+   + M
Sbjct: 432 TPRTEHYACMVDLLGRAGRLSEAQAFIERM 461


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 275/506 (54%), Gaps = 35/506 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +HA ++  G      +   LI FYT+C  +   R LFD++   NI  W  +   
Sbjct: 246 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 305

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +  +  EA+ +F EM+  G K + F   SVL +CG    +  G ++H+  +K +  +D
Sbjct: 306 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 365

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV + LIDMY+K   +  AKKVFD M E+++++ NAM+ GY  +   +EAL L  E+  
Sbjct: 366 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 425

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GV--------------------- 311
               P+++T+ +L+ G S S   + +SK    +  K GV                     
Sbjct: 426 RLFPPSLLTFVSLL-GVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVK 484

Query: 312 ----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                     E D+V W ++  G   +  N+EA   +  +      P   T ++++ A +
Sbjct: 485 DARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAAS 544

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A++R G++ H   + MG++    V +ALVDMYAKCG I EAR +F+    R+ V WNS
Sbjct: 545 NLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNS 604

Query: 422 MIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI   A HG  +EA+ +F + M+E  + ++++F AVL+AC H G VE G   FN M   +
Sbjct: 605 MISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM-PGF 663

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I P TEHYAC+V LLGR+G+L EA E I+ M  EP   VW +LL AC+  GN+EL + A
Sbjct: 664 GIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYA 723

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A+     +P+ + + +LL++++A+ G
Sbjct: 724 AEMAISTDPKDSGSYILLSNIFASKG 749



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 244/481 (50%), Gaps = 44/481 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G  LH  ++ SG  +   + T LI FY++  NI  AR++FD++ +     W  +   
Sbjct: 145 VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAG 204

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G    ++ +F +M    +  + +V+ SVL AC  L  +  G++IH+ VL+     D
Sbjct: 205 YTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 264

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             VV+ LID Y+KC  V+  +K+FD+MV K+I++   M+SGY+Q     EA+ L  E+  
Sbjct: 265 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 324

Query: 274 PRVKPN------VVT-----------------------------WNTLISGFSKSGDQVM 298
              KP+      V+T                              N LI  ++KS   + 
Sbjct: 325 LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLID 384

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             K+F +M     E +V+S+ ++I G        EA + F EM  + F P+  T  S+L 
Sbjct: 385 AKKVFDVM----AEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLG 440

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
             AS   +   K+IHG  I  GV  DL   SAL+D+Y+KC ++ +AR +F++M+E++ V 
Sbjct: 441 VSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVV 500

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFN-MM 476
           WN+M FG   H   +EA++L++ ++  R+K +  +F A++TA  ++  +  GQ+  N ++
Sbjct: 501 WNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLV 560

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +      P   +   +VD+  + G + EA +M  + S   D+  W +++     HG  E 
Sbjct: 561 KMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEE 617

Query: 537 A 537
           A
Sbjct: 618 A 618



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 245/471 (52%), Gaps = 43/471 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           KI+H Q+IVSGL   T +A  LI   ++   + +AR++FD++P  N+  W ++   Y+++
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 158 GYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           GY +EA+ VF ++  + G   N FV+ SV++AC  L  +  G ++H  V++  F  D +V
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 166

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLID YSK G++E+A+ VFD++ EK  V    +++GY + G +  +L L  ++    V
Sbjct: 167 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 226

Query: 277 KP-----------------------------------NVVTWNTLISGFSKSGDQVMVSK 301
            P                                   +V   N LI  ++K        K
Sbjct: 227 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 286

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF  M  K    +++SWT++ISG + N  + EA   F EM   G+ P     +S+L +C 
Sbjct: 287 LFDQMVVK----NIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 342

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S   + +G+++H   I   +E D  V++ L+DMYAK   + +A+ +FD M+E+N +++N+
Sbjct: 343 SREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNA 402

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G ++     EA+ELF++M  R      L+F ++L     +  +EL +++  ++  K+
Sbjct: 403 MIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII-KF 461

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
            +       + ++D+  +   + +A  + + M+ E D+ VW A+      H
Sbjct: 462 GVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQH 511



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 166/366 (45%), Gaps = 32/366 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +HA  I + L     +   LI  Y +   +  A+ +FD + + N+  + A+  
Sbjct: 346 ALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIE 405

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y+ +    EA+ +FHEM ++    ++    S+L     L  +   ++IH L++K     
Sbjct: 406 GYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSL 465

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  S+LID+YSKC  V+ A+ VF+EM EKDIV  NAM  GY Q     EAL L   + 
Sbjct: 466 DLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQ 525

Query: 273 TPRVKPNVVTWNTLISGFS-----KSGDQV-------------MVSKLFQLMRAK----- 309
             R KPN  T+  LI+  S     + G Q               V+     M AK     
Sbjct: 526 FSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIE 585

Query: 310 --------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                    +  DVV W S+IS    +   +EA   F+EM+ +G  P   T  ++L AC+
Sbjct: 586 EARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 645

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
            A  +  G          G++      + +V +  + G + EA+   +KM  E   + W 
Sbjct: 646 HAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWR 705

Query: 421 SMIFGC 426
           S++  C
Sbjct: 706 SLLSAC 711



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 166/325 (51%), Gaps = 4/325 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  K +H  +I  G++      + LI  Y++C  +  AR +F+E+ + +I  W A+  
Sbjct: 447 ALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFF 506

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y +   ++EA+ ++  +     K N F   +++ A  +L+ +  G++ H+ ++K     
Sbjct: 507 GYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDF 566

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             FV ++L+DMY+KCGS+E+A+K+F+  + +D+V  N+M+S + Q G A EAL +  E+ 
Sbjct: 567 CPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMM 626

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              ++PN VT+  ++S  S +G        F  M   G++P    +  V+S L  +    
Sbjct: 627 KEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLF 686

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA +  ++M  +   P +    S+L AC  A N+  GK     AI    + D      L 
Sbjct: 687 EAKEFIEKMPIE---PAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPK-DSGSYILLS 742

Query: 393 DMYAKCGFISEARTLFDKMSERNTV 417
           +++A  G  ++ + + D+M     V
Sbjct: 743 NIFASKGMWADVKKVRDRMDSSEVV 767



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 37/202 (18%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P     +++L    S   +   K IHG  IV G++ D  + + L+++ +K   +  AR +
Sbjct: 25  PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVV 84

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVG 464
           FDKM  +N +TW+SM+   +  GY +EA+ +F  + +RK  +H       +V+ AC  +G
Sbjct: 85  FDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDL-QRKSGEHPNEFVLASVIRACTQLG 143

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           +VE G +L                       + R+G              + D++V  +L
Sbjct: 144 VVEKGAQLHG--------------------FVVRSG-------------FDQDVYVGTSL 170

Query: 525 LGACKNHGNIELAEIAAKHLSE 546
           +     +GNIE A +    LSE
Sbjct: 171 IDFYSKNGNIEEARLVFDQLSE 192


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 40/509 (7%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D  L SG+ LHA     G A   +I   L+  Y +C +I  A   F E    N+  W  +
Sbjct: 385 DGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVM 444

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             AY      + +  +F +M I+ +  N +  PS+LK C  L D+  GE+IHS ++K SF
Sbjct: 445 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSF 504

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ------------- 257
             +A+V S LIDMY+K G ++ A  +      KD+V+   M++GY Q             
Sbjct: 505 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 564

Query: 258 ---RGLATEALNLVEEI----GTPRVK---------------PNVVTWNTLISGFSKSGD 295
              RG+ ++ + L   +    G   +K                ++   N L++ +SK G+
Sbjct: 565 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGN 624

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                  F+   A     D ++W +++SG   +  N+EA   F  M  +G    + T  S
Sbjct: 625 IEEAYLAFEQTEAG----DNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGS 680

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
            + A +  ANM++GK++H      G + +  V +A++ MYAKCG IS+A+  F ++S +N
Sbjct: 681 AVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKN 740

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+WN+MI   + HG+  EA++ F+QM     + +H++   VL+AC H+GLV+ G   F 
Sbjct: 741 EVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFE 800

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M  +Y + P+ EHY C+VD+L RAG L+ A + I  M  EPD  VW  LL AC  H N+
Sbjct: 801 SMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNM 860

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYA 563
           E+ E AA HL ELEPE +A  +LL++LYA
Sbjct: 861 EIGEFAAHHLLELEPEDSATYVLLSNLYA 889



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 219/474 (46%), Gaps = 42/474 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA++I  GL + T +   LI  Y+    +  AR +FD +   +   W+A+    ++   
Sbjct: 192 IHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNEC 251

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
             EA+ +F +M++ G+    +   SVL AC  +  +  GE++H LVLK  F +D +V ++
Sbjct: 252 EVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 311

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ +Y   GS+  A+ +F  M ++D V  N +++G  Q G   +A+ L + +    ++P+
Sbjct: 312 LVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPD 371

Query: 280 VVTWNTLISGFSKSG--------------------DQVMVSKLFQLMRAKGVEP------ 313
             T  +L+   S  G                    D++  + L    +   +E       
Sbjct: 372 SNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFL 431

Query: 314 -----DVVSWTS--VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                +VV W    V  GL+ +  N  +F  F++M  +   P   T  SIL  C    ++
Sbjct: 432 ETEVENVVLWNVMLVAYGLLDDLRN--SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 489

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G++IH   I    + + +V S L+DMYAK G +  A  +  + + ++ V+W +MI G 
Sbjct: 490 ELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 549

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM--MQEKYKIM 483
             + + D+A+  F QM +R  + D +  T  ++AC  +  ++ GQ++     +      +
Sbjct: 550 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 609

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           P       +V L  + G + EAY +    +   D   W AL+   +  GN E A
Sbjct: 610 PFQN---ALVTLYSKCGNIEEAY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEA 659



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 236/489 (48%), Gaps = 36/489 (7%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P A+S  +    +  +L+ G+ LH  ++  G +  T +   L++ Y    ++  A  +F
Sbjct: 270 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIF 329

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
             + + +   +  L    ++ GY ++A+ +F  M + GL+ +   + S++ AC     + 
Sbjct: 330 SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLF 389

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
           +G+++H+   K  F ++  +  +L+++Y+KC  +E A   F E   +++V  N M+  Y 
Sbjct: 390 SGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYG 449

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQV-------------- 297
                  +  +  ++    + PN  T+ +++      G  + G+Q+              
Sbjct: 450 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAY 509

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                  M +KL +L  A  +       DVVSWT++I+G      +D+A  TF++ML +G
Sbjct: 510 VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 569

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
                  +++ + ACA    ++ G++IH  A V G   DL  ++ALV +Y+KCG I EA 
Sbjct: 570 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAY 629

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD--HLSFTAVLTACCHV 463
             F++    + + WN+++ G    G  +EA+ +F +M  R+ +D  + +F + + A    
Sbjct: 630 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARM-NREGIDSNNFTFGSAVKAASET 688

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G+++  ++  K      TE    ++ +  + G +++A +    +S + ++  W A
Sbjct: 689 ANMKQGKQVHAVIT-KTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEV-SWNA 746

Query: 524 LLGACKNHG 532
           ++ A   HG
Sbjct: 747 MINAYSKHG 755



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 224/473 (47%), Gaps = 45/473 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ LH+Q++  G      ++ KL+ FY    ++  A  +FDE+P+  I  W  +  
Sbjct: 83  SLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIK 142

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GHLSDIGTGEKIHSLVLKHSFG 211
             A R    +   +F  M  + +  N      VL+AC G        E+IH+ ++    G
Sbjct: 143 ELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLG 202

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V + LID+YS+ G V++A++VFD +  KD  +  AM+SG  +     EA+ L  ++
Sbjct: 203 KSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDM 262

Query: 272 GTPRVKPNVVTWNTLISGFSK-----SGDQV------------------MVSKLFQ---L 305
               + P    +++++S   K      G+Q+                  +VS  F    L
Sbjct: 263 YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSL 322

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           + A+ +     + D V++ ++I+GL      ++A + FK M   G  P S T++S++ AC
Sbjct: 323 ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVAC 382

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +S   +  G+++H     +G   +  +  AL+++YAKC  I  A   F +    N V WN
Sbjct: 383 SSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWN 442

Query: 421 SMIFGCANHGYCDE---AIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            M+     +G  D+   +  +F QM+ E    +  ++ ++L  C  +G +ELG+++ + +
Sbjct: 443 VMLVA---YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 499

Query: 477 QEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
               K   +   Y C  ++D+  + G+L  A++++   + + D+  W  ++  
Sbjct: 500 ---IKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 548



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 173/367 (47%), Gaps = 17/367 (4%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL+ G+ +HAQ  VSG +        L+T Y++C NI  A + F++    +   W AL 
Sbjct: 588 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALV 647

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + + G ++EA+ VF  M+ +G+  N F   S +KA    +++  G+++H+++ K  + 
Sbjct: 648 SGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD 707

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V +++I MY+KCGS+  AKK F E+  K+ V+ NAM++ Y + G  +EAL+  +++
Sbjct: 708 SETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQM 767

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
               V+PN VT   ++S  S  G      + F+ M  + G+ P    +  V+  L     
Sbjct: 768 IHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGL 827

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
              A D   EM  +   P +    ++L AC    NM  G E     ++     D      
Sbjct: 828 LSRAKDFILEMPIE---PDALVWRTLLSACVVHKNMEIG-EFAAHHLLELEPEDSATYVL 883

Query: 391 LVDMYAKCGFISEARTLFDKMSERNT-----VTW-------NSMIFGCANHGYCDEAIEL 438
           L ++YA C           KM E+        +W       +S   G  NH   DE  E 
Sbjct: 884 LSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 943

Query: 439 FNQMEER 445
           F  + +R
Sbjct: 944 FKDLTKR 950



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 200/458 (43%), Gaps = 78/458 (17%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           +++   LK  G L +   G K+HS +LK  F  +A +   L+D Y   G ++ A KVFDE
Sbjct: 72  WLLEGCLKTNGSLDE---GRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDE 128

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW---------------- 283
           M E+ I   N M+     R L+ +   L   +    V PN  T+                
Sbjct: 129 MPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDV 188

Query: 284 --------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                               N LI  +S++G      ++F  +  K    D  SW ++IS
Sbjct: 189 VEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLK----DHSSWVAMIS 244

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           GL  N C  EA   F +M   G  PT    SS+L AC    ++  G+++HG  + +G   
Sbjct: 245 GLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 304

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           D +V +ALV +Y   G +  A  +F  MS+R+ VT+N++I G +  GY ++A+ELF +M+
Sbjct: 305 DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQ 364

Query: 444 -ERKKLDHLSFTAVLTACCHVGLVELGQR-------------------LFNMMQE----- 478
            +  + D  +  +++ AC   G +  GQ+                   L N+  +     
Sbjct: 365 LDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424

Query: 479 ---KYKIMPRTEH---YACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACK 529
               Y +    E+   +  M+   G    L  ++ + + M  E   P+ + + ++L  C 
Sbjct: 425 TALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 484

Query: 530 NHGNIELAE-IAAKHLSELEPESAANNMLLTDLYANAG 566
             G++EL E I ++ +      +A    +L D+YA  G
Sbjct: 485 RLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLG 522



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 163/382 (42%), Gaps = 33/382 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   ++  IR   L+ G+ +H+Q+I +       + + LI  Y +   +  A  +     
Sbjct: 476 YPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 535

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             ++  W  +   Y +  +  +A+T F +M  +G++ +   + + + AC  L  +  G++
Sbjct: 536 GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ 595

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IH+      F +D    ++L+ +YSKCG++E+A   F++    D +A NA+VSG+ Q G 
Sbjct: 596 IHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGN 655

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV----- 315
             EAL +   +    +  N  T+ + +   S++ +     ++  ++   G + +      
Sbjct: 656 NEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNA 715

Query: 316 --------------------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
                                     VSW ++I+    +    EA D+F +M+     P 
Sbjct: 716 IISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPN 775

Query: 350 SATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
             T+  +L AC+    + +G E         G+         +VDM  + G +S A+   
Sbjct: 776 HVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFI 835

Query: 409 DKMS-ERNTVTWNSMIFGCANH 429
            +M  E + + W +++  C  H
Sbjct: 836 LEMPIEPDALVWRTLLSACVVH 857


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1724

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 166/529 (31%), Positives = 282/529 (53%), Gaps = 33/529 (6%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S    L P+ Y + +++ I  +A + G ++H  LI +G      + TKLI FY +  ++ 
Sbjct: 23  SNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVI 82

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            AR +FD +P+ ++  W A+   Y++ G  ++A  +F +M   G+K N F   S L+AC 
Sbjct: 83  AARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACT 142

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            L  +  G ++   + K  F  + FV S+L+D +SKCG +E A  +F  M+E+D+V+ NA
Sbjct: 143 SLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNA 202

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL----- 305
           M+ GY  +G A ++  +   +    + P+  T  +++   ++ G  ++ +++  +     
Sbjct: 203 MIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLG 262

Query: 306 --------------------------MRAKGVEPDVVSWTSVISGLVH-NFCNDEAFDTF 338
                                     +R   ++ D+ S T++I+G  H    + +A D F
Sbjct: 263 YGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLF 322

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           KEM           + S+L  CA+ A+   G +IH  A+      D+ + +AL+DMYAK 
Sbjct: 323 KEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKS 382

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVL 457
           G I +A+  FD+M E+N ++W S+I G A HGY   A+ L+ +ME +  K + ++F ++L
Sbjct: 383 GEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLL 442

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            AC H GL   G   FN M  KY I PR EHY+CMVDL  R G L EAY ++  +  + +
Sbjct: 443 FACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHN 502

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +WGA+LGA   +G + L + AA +L  ++PE++ N ++L  +Y+ AG
Sbjct: 503 ASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAG 551



 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/510 (29%), Positives = 253/510 (49%), Gaps = 41/510 (8%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            L+ G+ +H  ++  GL     I   L+T Y+E      A ++F  + + ++  W ++   
Sbjct: 1064 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 1123

Query: 154  YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            Y + G   + + +  E+   G   N     S L AC +   +   + +H+L++   F   
Sbjct: 1124 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 1183

Query: 214  AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR---GLATEALNLVEE 270
              V ++L+ MY K G + +AKKV   M + D V  NA++ G+ +      A +A  L+ E
Sbjct: 1184 LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE 1243

Query: 271  IGTPRVKPNVVTW---------------------------------NTLISGFSKSGDQV 297
             G P     +V+                                  N+LI+ ++K GD  
Sbjct: 1244 KGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLN 1303

Query: 298  MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              + +F  +  K      ++W ++++   H+ C +EA   F EM + G      + S  L
Sbjct: 1304 SSNYIFDGLGNK----SPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGL 1359

Query: 358  PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             A A+ A +  G+++HG  I +G E DLHV +A +DMY KCG + +   +  +   R+ +
Sbjct: 1360 AATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRL 1419

Query: 418  TWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            +WN +I   A HG   +A E F++M +   K DH++F ++L+AC H GLV+ G   ++ M
Sbjct: 1420 SWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSM 1479

Query: 477  QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
              ++ + P  EH  C++DLLGR+GRL+ A   IK M   P+   W +LL AC+ HGN+EL
Sbjct: 1480 TREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLEL 1539

Query: 537  AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            A   A+HL EL+P   +  +L +++ A +G
Sbjct: 1540 ARKTAEHLLELDPSDDSAYVLYSNVCATSG 1569



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 229/478 (47%), Gaps = 61/478 (12%)

Query: 96   SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
            +GK LHA  IV  +         LI  Y++  NI HAR +FDE+   N   W  +   Y 
Sbjct: 762  AGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYV 821

Query: 156  RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC---GHLSDIGTGEKIHSLVLKHSFGT 212
            R G ++EAV +F +M   G++ N F++ S++ AC   G+++D   G ++H  V+K     
Sbjct: 822  RVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMAD--EGFQVHGFVVKTGILG 879

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            D +V ++L+  Y   G V  A+K+F+EM + ++V+  +++ GY   G   E LN+ + + 
Sbjct: 880  DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR 939

Query: 273  TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP------------------- 313
               V  N  T+ T+ S      DQV+  ++   +   G E                    
Sbjct: 940  QEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVE 999

Query: 314  ------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                        D++SW ++IS   H+    E+   F  M        S T+SS+L  C+
Sbjct: 1000 EACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCS 1059

Query: 362  SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
            S  N++ G+ IHG  + +G++ ++ + + L+ +Y++ G   +A  +F  M+ER+ ++WNS
Sbjct: 1060 SVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNS 1119

Query: 422  MIFGCANHGYCDEAIELFNQMEERKK-LDHLSFTAVLTAC-----------CHVGLVELG 469
            M+      G C + +++  ++ +  K ++H++F + L AC            H  ++  G
Sbjct: 1120 MMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAG 1179

Query: 470  QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
               F ++               +V + G+ G + EA ++++TM  +PD   W AL+G 
Sbjct: 1180 FHDFLIVGN------------ALVTMYGKLGMMMEAKKVLQTM-PQPDRVTWNALIGG 1224



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 193/412 (46%), Gaps = 50/412 (12%)

Query: 88   YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
            Y+ D   Q    +H  ++ +G+     + T L+ FY     +++A+ LF+E+P  N+  W
Sbjct: 860  YMADEGFQ----VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSW 915

Query: 148  IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             +L   Y+  G   E + V+  M  +G+  N     +V  +CG L D   G ++   +++
Sbjct: 916  TSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQ 975

Query: 208  HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL-- 265
            + F     V +SLI M+S   SVE+A  VFD M E DI++ NAM+S Y   GL  E+L  
Sbjct: 976  YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRC 1035

Query: 266  ------------------------------------NLVEEIGTPRVKPNVVTWNTLISG 289
                                                 LV ++G   +  NV   NTL++ 
Sbjct: 1036 FHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG---LDSNVCICNTLLTL 1092

Query: 290  FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
            +S++G       +FQ M     E D++SW S+++  V +    +      E+L  G    
Sbjct: 1093 YSEAGRSEDAELVFQAM----TERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMN 1148

Query: 350  SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
              T +S L AC++   +   K +H   IV G    L V +ALV MY K G + EA+ +  
Sbjct: 1149 HVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQ 1208

Query: 410  KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
             M + + VTWN++I G A +   +EA++ +  + E+    ++++  +VL AC
Sbjct: 1209 TMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGAC 1260



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 198/429 (46%), Gaps = 50/429 (11%)

Query: 137  DEIPKTNI--HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
            D++  +N    RW  L G  A+            + H     + +  +   LK    ++ 
Sbjct: 708  DDLKTSNAGSRRWGCLDGDIAK--------VFLQQQHTDYGIRCLNAVNFPLKGFSEITS 759

Query: 195  IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
               G+ +H+  +  S     F  ++LI+MYSK G++E A+ VFDEM  ++  + + M+SG
Sbjct: 760  QMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSG 819

Query: 255  YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS--------------------G 294
            YV+ GL  EA+ L  ++    V+PN     +LI+  S+S                    G
Sbjct: 820  YVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILG 879

Query: 295  DQVMVSKLFQLMRAKGV----------EPD--VVSWTSVISGLVHNFCNDEAFDTFKEML 342
            D  + + L     + G+           PD  VVSWTS++ G   +    E  + ++ M 
Sbjct: 880  DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR 939

Query: 343  SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
             +G      T +++  +C    +   G ++ G  I  G E  + V ++L+ M++    + 
Sbjct: 940  QEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVE 999

Query: 403  EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACC 461
            EA  +FD M+E + ++WN+MI   A+HG C E++  F+ M     + +  + +++L+ C 
Sbjct: 1000 EACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCS 1059

Query: 462  HVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
             V  ++ G+ +  ++    K+   +    C  ++ L   AGR +E  E++    TE DL 
Sbjct: 1060 SVDNLKWGRGIHGLV---VKLGLDSNVCICNTLLTLYSEAGR-SEDAELVFQAMTERDLI 1115

Query: 520  VWGALLGAC 528
             W +++ AC
Sbjct: 1116 SWNSMM-AC 1123



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 6/283 (2%)

Query: 91   DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
            D  L+ G  +HA ++++G      +   LIT Y +C +++ +  +FD +   +   W A+
Sbjct: 1264 DDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAM 1323

Query: 151  TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              A A  G  +EA+ +F EM   G+  + F     L A  +L+ +  G+++H LV+K  F
Sbjct: 1324 VAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGF 1383

Query: 211  GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +D  V ++ +DMY KCG +    K+  + + +  ++ N ++S + + G   +A     E
Sbjct: 1384 ESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHE 1443

Query: 271  IGTPRVKPNVVTWNTLISGFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
            +     KP+ VT+ +L+S  +  G  D+ + +    + R  GV P +     +I  L  +
Sbjct: 1444 MLKLGPKPDHVTFVSLLSACNHGGLVDEGL-AYYDSMTREFGVFPGIEHCVCIIDLLGRS 1502

Query: 329  FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
                 A    KEM      P      S+L AC    N+   ++
Sbjct: 1503 GRLSHAEGFIKEMPVP---PNDLAWRSLLAACRIHGNLELARK 1542



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 147/293 (50%), Gaps = 18/293 (6%)

Query: 247  AMNAMVSGY--VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
            A+N  + G+  +   +A +AL+    +G+  V   +   NTLI+ +SK G+      +F 
Sbjct: 746  AVNFPLKGFSEITSQMAGKALHAFCIVGS--VNLGIFQTNTLINMYSKFGNIEHARYVFD 803

Query: 305  LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
             MR +    +  SW++++SG V     +EA   F +M   G  P    ++S++ AC+ + 
Sbjct: 804  EMRHR----NEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSG 859

Query: 365  NM-RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
             M   G ++HG  +  G+ GD++V +ALV  Y   G +  A+ LF++M + N V+W S++
Sbjct: 860  YMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM 919

Query: 424  FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE---LG-QRLFNMMQEK 479
             G ++ G   E + ++ +M +     + +  A +T+ C  GL+E   LG Q L +++Q  
Sbjct: 920  VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC--GLLEDQVLGYQVLGHIIQ-- 975

Query: 480  YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            Y           ++ +      + EA  +   M+ E D+  W A++ A  +HG
Sbjct: 976  YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISAYAHHG 1027


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 179/512 (34%), Positives = 278/512 (54%), Gaps = 42/512 (8%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH---- 145
           R + ++S K +HA LI SGL     + +K+  F+   ++I      FD + +T++H    
Sbjct: 14  RCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFG--KHIGFVDYAFDFLNQTDLHVGTL 71

Query: 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            +  L  AYA     + A  V+  +   G   +++  P VLKAC     +  GE++H + 
Sbjct: 72  PYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVA 131

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K  F  D +V +SL+  YS CG    A +VFDEM+ +D+V+   ++SGYV+ GL  EA+
Sbjct: 132 VKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAI 191

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM--RAKGV------------ 311
           NL  ++    V PNV T+ +++    + G   M   +  L+  RA G+            
Sbjct: 192 NLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMY 248

Query: 312 -----------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                            + D+VSWTS+ISGLV      ++ + F +M   G  P    ++
Sbjct: 249 VKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILT 308

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L ACAS   +  G+ +       G+E D+H+ +ALVDMYAKCG I  A  +F+ +  R
Sbjct: 309 SVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR 368

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           N  TWN+++ G A HG+  EA++ F  M     + + ++F A+LTACCH GLV  G+  F
Sbjct: 369 NIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYF 428

Query: 474 -NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             M+ + +   PR EHY CM+DLL RAG L EAY+ I+ M   PD+ +WGALL ACK +G
Sbjct: 429 YQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANG 488

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           N+EL++    HL EL+ + +   +LL+++YA 
Sbjct: 489 NVELSQEILSHLLELKSQDSGVYVLLSNIYAT 520



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 10/243 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +   +   G+     I T L+  Y +C  I  A  +F+ IP  NI  W AL G
Sbjct: 319 ALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLG 378

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G+  EA+  F  M   G++ N     ++L AC H   +  G      ++   F  
Sbjct: 379 GLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNF 438

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALN 266
              +     +ID+  + G +++A K    M +  D++   A++S     G   L+ E L+
Sbjct: 439 SPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILS 498

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
            + E+ +      V+  N  I   ++  D   V+++ +LM+ KG+     S    + G  
Sbjct: 499 HLLELKSQDSGVYVLLSN--IYATNERWDD--VTRVRRLMKDKGIRKFPGSSVIEVDGEA 554

Query: 327 HNF 329
           H F
Sbjct: 555 HEF 557


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 271/503 (53%), Gaps = 37/503 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G ++H  L+  G      +   LI+FY +   I  A M+FDE+P+ +I  W ++ G  A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC--GHLSDIGTGEKIHSLVLKHSFGTDA 214
            G + +AV +F  M ++G + +   + SV+ AC   H S IG    +H   ++    ++ 
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGG--VVHGYSVRTGLISET 120

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            + ++L+DMYS C       K+F  M +K++V+  AM++ Y + G   +   L +E+G  
Sbjct: 121 SLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 275 RVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRA 308
            ++P+V    + +  F+     K G  V                     M  K   +  A
Sbjct: 181 GIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEA 240

Query: 309 KGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           + +     + D +SW ++I G   +   +EAF  F EML Q   P + T++ ILPA AS 
Sbjct: 241 RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASL 299

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           +++ RG+E+H  A+  G   D  V +ALVDMY KCG +  AR LFD ++ +N ++W  MI
Sbjct: 300 SSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMI 359

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G   HG   +AI LF QM+    + D  SF+A+L AC H GL + G R FN M+ +++I
Sbjct: 360 AGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRI 419

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P+ +HYACMVDLL   G L EAYE I+TM  EPD  +W +LL  C+ H N++LAE  A+
Sbjct: 420 EPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAE 479

Query: 543 HLSELEPESAANNMLLTDLYANA 565
            + ELEPE+    +LL ++YA A
Sbjct: 480 MVFELEPENTGYYVLLANIYAEA 502



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 155/294 (52%), Gaps = 5/294 (1%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           A +  ++ +  + +L+ GK +H   I +G+  +  +A  L+  Y +C  +  AR +FD +
Sbjct: 188 AITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHV 247

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
            K +   W  L G Y+R     EA T+F+EM +Q L+ N   +  +L A   LS +  G 
Sbjct: 248 TKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGR 306

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H+  ++  +  D FV ++L+DMY KCG++  A+++FD +  K++++   M++GY   G
Sbjct: 307 EMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHG 366

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSW 318
              +A+ L E++    ++P+  +++ ++   S SG +    + F  MR +  +EP +  +
Sbjct: 367 RGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHY 426

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
             ++  L H     EA++  + M  +   P S+   S+L  C    N++  +++
Sbjct: 427 ACMVDLLCHTGNLKEAYEFIETMPIE---PDSSIWVSLLRGCRIHRNVKLAEKV 477


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 177/516 (34%), Positives = 270/516 (52%), Gaps = 41/516 (7%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +RD  L +   LH  ++ S  A  + + T L+  Y++C  +  AR +FDEIP  ++  W 
Sbjct: 148 LRDIVLTTK--LHCNILKSNAAD-SFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWT 204

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           ++  AY +    +E + +F+ M    L  N+F + S++ AC  L  +  G+ +H  V+K+
Sbjct: 205 SMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKN 264

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV------EKDIVAMNAMVSGYVQRGLAT 262
               ++++ +SL++MY KCG +  A+ VFDE          D+V   AM+ GY QRG   
Sbjct: 265 GIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQ 324

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG------------ 310
            AL L  +    R+ PN VT  +L+S  ++  + VM   L  L+   G            
Sbjct: 325 AALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNSLVD 384

Query: 311 ------------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
                             V+ DVVSW SVISG   +    EA D F  M  + F P + T
Sbjct: 385 MYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVT 444

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           +  +L ACAS    + G  +HG A+  G V   ++V +AL++ YAKCG  + AR +FD M
Sbjct: 445 VVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGM 504

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQ 470
            E+N VTW +MI GC   G    ++ LF  M +E    + + FT +L AC H G+VE G 
Sbjct: 505 GEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGL 564

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
            +F+ M ++   +P  +HYACMVDLL RAG L EA + I  M  +P + V+GA L  C  
Sbjct: 565 MIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGL 624

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           H N +  E+A + + EL P+ A   +L+++LYA+ G
Sbjct: 625 HSNFDFGEVAIRRMLELHPDQACYYVLISNLYASDG 660



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 220/476 (46%), Gaps = 48/476 (10%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA LI+SG        T LI+ Y     + HAR LF  +P    H +  +   +   
Sbjct: 57  KTLHASLIISGHPP----DTTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLN 112

Query: 158 GYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             H   V+ ++      G   ++ V   +LK    L DI    K+H  +LK S   D+FV
Sbjct: 113 DVHSHVVSFYNLARTTLGSFNDLVVFSILLKTASQLRDIVLTTKLHCNILK-SNAADSFV 171

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           ++SL+D YSKCG +  A+KVFDE+ ++ +V+  +M+  YVQ   A E L L   +    +
Sbjct: 172 LTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFL 231

Query: 277 KPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQL------------ 305
             NV T  +L++  +K G                   +  + + L  +            
Sbjct: 232 DGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARS 291

Query: 306 ------MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                 +   G   D+V WT++I G         A + F +       P S T++S+L A
Sbjct: 292 VFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSA 351

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA   N+  GK +H   +  G++ D  +R++LVDMYAKCG I +A  +F    +++ V+W
Sbjct: 352 CAQLENIVMGKLLHVLVVKYGLD-DTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSW 410

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NS+I G A  G   EA++LFN+M     L D ++   VL+AC  VG  ++G  L      
Sbjct: 411 NSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHG-FAL 469

Query: 479 KYKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           KY ++  + +    +++   + G    A  +   M  E +   W A++G C   G+
Sbjct: 470 KYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMG-EKNAVTWAAMIGGCGMQGD 524


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 186/547 (34%), Positives = 282/547 (51%), Gaps = 76/547 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITF---YTECQNIHHARMLFDEIPKTNIHRWI 148
           + LQS +++HAQ+I +GL       +KLI F         + +A  +F+ I + N+  W 
Sbjct: 13  KTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWN 72

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            +   +A       A+ ++  M   GL  N +  P +LK+C        G++IH  VLK 
Sbjct: 73  TMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKL 132

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFD------------------------------ 238
            +  D +V +SLI MY + G +E A+KVFD                              
Sbjct: 133 GYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMF 192

Query: 239 -EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------------------ 279
            E+  KD+V+ NAM+SGY + G   EAL L +E+    V+P+                  
Sbjct: 193 DEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE 252

Query: 280 ----VVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
               V +W             N LI  + K G+      LF+ +  K    DV+SW ++I
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK----DVISWNTLI 308

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMG 380
            G  H     EA   F+EML  G  P   T+ SILPACA    +  G+ IH      + G
Sbjct: 309 GGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKG 368

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           V      R++L+DMYAKCG I  A+ +FD +  R+  +WN+MIFG A HG  + A ++F+
Sbjct: 369 VANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFS 428

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M + + + D ++F  +L+AC H G+++LG+ +F  M+E YKI P+ EHY CM+DLLG +
Sbjct: 429 RMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHS 488

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G   EA EMI TM  EPD  +W +LL ACK + N+EL E  A++L ++EP++  + +LL+
Sbjct: 489 GLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLS 548

Query: 560 DLYANAG 566
           ++YA AG
Sbjct: 549 NIYATAG 555



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 128/508 (25%), Positives = 207/508 (40%), Gaps = 100/508 (19%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K    G  I  H    ++   + L    ++  I +Y+++  L+  + 
Sbjct: 109 LLKSCAKS-----KAFREGQQIHGH----VLKLGYDLDLYVHTSLISMYVQNGRLEDARK 159

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +  Q       R     T LIT Y     I  A+ +FDEIP  ++  W A+   YA  G 
Sbjct: 160 VFDQ----SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGN 215

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++EA+ +F EM    ++ +   + SV+ AC   + I  G ++HS +  H FG++  +V++
Sbjct: 216 NKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNA 275

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID+Y KCG VE A  +F+ +  KD+++ N ++ GY    L  EAL L +E+      PN
Sbjct: 276 LIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 335

Query: 280 VVT------------------W-------------------NTLISGFSKSGDQVMVSKL 302
            VT                  W                    +LI  ++K GD     ++
Sbjct: 336 DVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQV 395

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  +  + +     SW ++I G   +   + AFD F  M      P   T   +L AC+ 
Sbjct: 396 FDSILNRSLS----SWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSH 451

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
           +                                   G +   R +F  M E   +T    
Sbjct: 452 S-----------------------------------GMLDLGRHIFRSMKEDYKITPKLE 476

Query: 423 IFGC-----ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
            +GC      + G   EA E+ N ME     D + + ++L AC     VELG+   +  Q
Sbjct: 477 HYGCMIDLLGHSGLFKEAEEMINTMEMEP--DGVIWCSLLKACKMYANVELGE---SYAQ 531

Query: 478 EKYKIMPRTE-HYACMVDLLGRAGRLAE 504
              KI P+    Y  + ++   AGR  E
Sbjct: 532 NLIKIEPKNPGSYVLLSNIYATAGRWNE 559


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 180/539 (33%), Positives = 268/539 (49%), Gaps = 67/539 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+SGK +H   +  G+     ++  L+  Y  C  +  A+ +FD +P  N+  W +L   
Sbjct: 258 LKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASC 317

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G+ Q+ + VF EM + G+K +   + S+L AC  L D+ +G+ IH   +KH    D
Sbjct: 318 YVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVED 377

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+++Y+ C  V +A+ VFD M  +++V  N++ S YV  G   + LN+  E+  
Sbjct: 378 VFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVL 437

Query: 274 PRVKPNVVTWNTLISGFS-----KSG-------------DQVMVSKLFQLMRAKGV---- 311
             VKP++VT  +++   S     KSG             + V V      + AK V    
Sbjct: 438 NGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVRE 497

Query: 312 ---------EPDVVSWTS-----------------------------------VISGLVH 327
                      +V SW                                     VI G V 
Sbjct: 498 AQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVK 557

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N   +EA + F++M + GF P   TI SIL AC+ +  +R GKEIH        + DL  
Sbjct: 558 NSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLAR 617

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
            +ALVDMYAKCG +S +R +FD M  ++  +WN+MIF    HG   EA+ LF +M     
Sbjct: 618 TNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMV 677

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           K D  +FT VL+AC H  LVE G ++FN M   + + P  EHY C+VD+  RAG L EAY
Sbjct: 678 KPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAY 737

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             I+ M  EP    W A L  C+ + N+ELA+I+AK L E++P  +AN + L ++   A
Sbjct: 738 GFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTA 796



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 253/534 (47%), Gaps = 69/534 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+SGK +H  ++  G+     +++  + FY +C  +  A+ +FD +P  ++  W +L+  
Sbjct: 157 LKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC 216

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G+ Q+ + VF EM + G+K +   +  +L AC  L D+ +G+ IH   LKH    +
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVEN 276

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+++Y  C  V +A+ VFD M  ++++  N++ S YV  G   + LN+  E+G 
Sbjct: 277 VFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGL 336

Query: 274 PRVKPNVVTWNTLISGFS-----KSGDQV--------MVSKLFQ-------------LMR 307
             VKP+ +  ++++   S     KSG  +        MV  +F              +  
Sbjct: 337 NGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVRE 396

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V       +VV+W S+ S  V+     +  + F+EM+  G  P   T+ SIL AC+ 
Sbjct: 397 AQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSD 456

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             +++ GK IHG A+  G+  D+ V +AL+ +YAKC  + EA+ +FD +  R   +WN +
Sbjct: 457 LQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGI 516

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK-- 479
           +     +   ++ + +F+QM  +  K D ++++ V+  C     +E    +F  MQ    
Sbjct: 517 LTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGF 576

Query: 480 -------YKIMPRTEHYAC-------------------------MVDLLGRAGRLAEAYE 507
                  Y I+       C                         +VD+  + G L+ +  
Sbjct: 577 KPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRN 636

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIE--LAEIAAKHLSELEPESAANNMLLT 559
           +   M  + D+F W  ++ A   HGN +  L+      LS ++P+SA    +L+
Sbjct: 637 VFDMMPIK-DVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLS 689



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 201/395 (50%), Gaps = 32/395 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K  H      G+     I    I  Y +C+ +  AR +FD++   ++  W +L+  Y   
Sbjct: 60  KQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNC 119

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+ Q+ + VF +M +  +K N   + S+L  C  L D+ +G++IH  V++H    D FV 
Sbjct: 120 GFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVS 179

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           S+ ++ Y+KC  V +A+ VFD M  +D+V  N++ S YV  G   + LN+  E+    VK
Sbjct: 180 SAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVK 239

Query: 278 PNVVTWNTLISGFS-----KSGDQV--------MVSKLFQ-------------LMRAKGV 311
           P+ VT + ++S  S     KSG  +        MV  +F              +  A+ V
Sbjct: 240 PDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAV 299

Query: 312 -----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                  +V++W S+ S  V+     +  + F+EM   G  P    +SSILPAC+   ++
Sbjct: 300 FDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDL 359

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           + GK IHG A+  G+  D+ V +ALV++YA C  + EA+T+FD M  RN VTWNS+    
Sbjct: 360 KSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCY 419

Query: 427 ANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC 460
            N G+  + + +F +M     K D ++  ++L AC
Sbjct: 420 VNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHAC 454



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 174/347 (50%), Gaps = 32/347 (9%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G   EA+ ++     +G+K +  V  +V KAC    D    ++ H    +    +D  + 
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++ I  Y KC  VE A++VFD++V +D+V  N++ + YV  G   + LN+  ++G  +VK
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 278 PNVVTWNTLISGFS-----KSG-------------DQVMVSKLFQLMRAKGV-------- 311
            N +T ++++ G S     KSG             + V VS  F    AK +        
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 312 -----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                  DVV+W S+ S  V+     +  + F+EM+  G  P   T+S IL AC+   ++
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDL 258

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           + GK IHG A+  G+  ++ V +ALV++Y  C  + EA+ +FD M  RN +TWNS+    
Sbjct: 259 KSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCY 318

Query: 427 ANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL 472
            N G+  + + +F +M     K D ++ +++L AC  +  ++ G+ +
Sbjct: 319 VNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTI 365


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 273/504 (54%), Gaps = 43/504 (8%)

Query: 100 LHAQLIVSGLARLTQIATKL-ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           +HA +I +GL         L I  Y     I  AR LFD++P+  +  W A+  AY+RR 
Sbjct: 26  IHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRY 85

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
           +  E + ++H+M  +G K +       +KA   L D+  GE+I    +   +G D FV S
Sbjct: 86  HLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGS 145

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK- 277
           S++++Y KCG +++AK VFD+MV++D+V    M++G VQ G   EA+++   +    ++ 
Sbjct: 146 SVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEG 205

Query: 278 -----------------------------------PNVVTWNTLISGFSKSGDQVMVSKL 302
                                               +V+   +L+  ++K GD  + S++
Sbjct: 206 DGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRV 265

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ M  K    + VSW ++ISG   N   + A D   EM S  F P +A + S L AC+ 
Sbjct: 266 FEQMPRK----NAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQ 321

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             +++ GK IHG  IV  +  +L + +AL+DMYAKCG +S A  +FD++  R+ + WN+M
Sbjct: 322 VGHLKLGKSIHG-YIVRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTM 380

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I     HG   E + LF +M+E     DH +F ++L+A  H G V++GQ  FN M  + K
Sbjct: 381 IASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECK 440

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  +HYACMVDL  RAGR+ EAY++I++M+TEP L +W ALL  C N+ N+   E+AA
Sbjct: 441 IPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAA 500

Query: 542 KHLSELEPESAANNMLLTDLYANA 565
           K + +L P+      L+++ ++ A
Sbjct: 501 KKILDLNPDDLGIYALVSNFFSLA 524



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 187/370 (50%), Gaps = 41/370 (11%)

Query: 200 KIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +IH+L++    F  ++     +I  Y++ G +  A+ +FD++ ++ + A NAM+  Y +R
Sbjct: 25  QIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRR 84

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQVM--------------- 298
              TE LNL  ++     KP+  T+   I   S     ++G+++                
Sbjct: 85  YHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVG 144

Query: 299 --VSKLF---------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
             V  L+         +L+  K V+ DVV W ++I+GLV N    EA D F+ M  +G  
Sbjct: 145 SSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIE 204

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEART 406
                +  ++ ACA+   ++ G  +HG A+    +  D+ ++++LVDMYAK G +  A  
Sbjct: 205 GDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASR 264

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +F++M  +N V+W ++I G A +G+ + A++L  +M+  + K D     + L AC  VG 
Sbjct: 265 VFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGH 324

Query: 466 VELGQRLFNMMQEK--YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
           ++LG+ +   +  +  ++++  T     ++D+  + G L+ A+ +   + +  D+ +W  
Sbjct: 325 LKLGKSIHGYIVRRLGFELVLGT----ALIDMYAKCGSLSCAHAIFDRVDSR-DVILWNT 379

Query: 524 LLGACKNHGN 533
           ++ +   HG+
Sbjct: 380 MIASYGIHGD 389



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 184/399 (46%), Gaps = 54/399 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L++G+ +  + +  G      + + ++  Y +C  I  A+++FD++ K ++  W  + 
Sbjct: 120 KDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMI 179

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
               + G   EAV +F  M  +G++ +  ++  +++AC +L ++  G  +H   ++    
Sbjct: 180 TGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREML 239

Query: 212 TDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            D  ++ +SL+DMY+K G +E A +VF++M  K+ V+  A++SG+ Q G A  AL+L+ E
Sbjct: 240 MDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVE 299

Query: 271 IGTPRVKPN----------------------------------VVTWNTLISGFSKSGDQ 296
           + +   KP+                                  +V    LI  ++K G  
Sbjct: 300 MQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSL 359

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +F  + ++    DV+ W ++I+    +    E    F +M      P  AT +S+
Sbjct: 360 SCAHAIFDRVDSR----DVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASL 415

Query: 357 LPACASAANMRRGKE-----IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           L A + +  +  G+      ++ C I      + H  + +VD++++ G + EA  L + M
Sbjct: 416 LSALSHSGQVDVGQYWFNAMVNECKI---PPSEKHY-ACMVDLFSRAGRVEEAYQLIESM 471

Query: 412 -SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
            +E     W +++ GC N+        LF ++  +K LD
Sbjct: 472 NTEPGLAIWVALLSGCHNYRNL-----LFGEVAAKKILD 505


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 274/495 (55%), Gaps = 33/495 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA LI  GL + + + T+ I+      +I ++  +FD +   +   W +L   Y  +  
Sbjct: 48  VHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQ 107

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
             + ++++  M  +    + +  PS+LK C     +  G  +H  +L+     D +V +S
Sbjct: 108 FVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTS 167

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV--- 276
           L+++Y K G ++ A+KVFD M E+++V+  AM+ GY   G   EA  L + +    V   
Sbjct: 168 LVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASW 227

Query: 277 ------------------------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
                                   + NVV++ T+I G++K+GD +    LFQ    K  E
Sbjct: 228 NAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQ----KAPE 283

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            D+++W+++ISG   N   +EA  TF EM S+   P    ++S++ AC+   N+   K +
Sbjct: 284 RDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWV 343

Query: 373 HGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
              A    V+    HV +AL+DM AKCG +  A  LF+KM +R+ +++ S++ G + HG+
Sbjct: 344 DSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGH 403

Query: 432 CDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
            D+A+ LF +M  E    D ++FT +LTAC   GLV+ G   F MM+ KY ++P  +HYA
Sbjct: 404 GDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYA 463

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           C+VDLL R+GRL EAYE+IK++  +     WGALLGACK + + ELAE+ A  L E+EPE
Sbjct: 464 CIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEPE 523

Query: 551 SAANNMLLTDLYANA 565
           +A N +LL+++YA A
Sbjct: 524 NAGNYVLLSNIYAAA 538



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 165/379 (43%), Gaps = 48/379 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +  G  LH  ++  G+     + T L+  Y +   I  AR +FD + + N+  W A+   
Sbjct: 143 MMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVG 202

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y+  G   EA  +F  M     ++N+    +++     + D+ + EK    + +     +
Sbjct: 203 YSSIGNLVEAKRLFDLMP----ERNVASWNAIIGGYMKMGDVKSAEKAFDEMPEK----N 254

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               +++ID Y+K G +  A+ +F +  E+DI+A +A++SGY Q G   EA+    E+ +
Sbjct: 255 VVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSS 314

Query: 274 PRVKPNVVTWNTLISGFSKSGDQ---------------------------VMVSKLFQLM 306
             VKP+     +L+   S+ G+                             M +K   + 
Sbjct: 315 RNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNME 374

Query: 307 RA-----KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           RA     K  + D++S+ SV+ GL  +   D+A   F+ ML +   P     + IL AC+
Sbjct: 375 RAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACS 434

Query: 362 SAANMRRGK---EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
            A  +  G    E+  C   M    D +  + +VD+ ++ G + EA  L   +  + +  
Sbjct: 435 RAGLVDEGWHYFEMMRCKYSMVPSVDHY--ACIVDLLSRSGRLKEAYELIKSVPVQSHAG 492

Query: 418 TWNSMIFGCANHGYCDEAI 436
            W +++  C    YCD  +
Sbjct: 493 AWGALLGAC--KLYCDSEL 509



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 180/411 (43%), Gaps = 36/411 (8%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +++ I ++LK C    D+    ++H+ +++     D+F+V+  I   +    +  +  VF
Sbjct: 28  SLYSISALLKLCKTHIDL---HQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVF 84

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           D ++       N++VSGY  +    + ++L   +      P+  T+ +L+   +  G  +
Sbjct: 85  DRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMM 144

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVIS-----GLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
               L   +   GV+ D+   TS+++     GL+   C  + FD   E     +      
Sbjct: 145 EGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLID--CARKVFDGMSERNVVSWTAMIVG 202

Query: 353 ISSI--------LPACASAANMRRGKEIHGCAIVMG------------VEGDLHVRSALV 392
            SSI        L       N+     I G  + MG             E ++   + ++
Sbjct: 203 YSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMI 262

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           D YAK G +  AR LF K  ER+ + W+++I G   +G  +EA++ F +M  R  K D  
Sbjct: 263 DGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKF 322

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY-ACMVDLLGRAGRLAEAYEMIK 510
             T+++ AC  +G ++L  +  +    +  +  R  H  A ++D+  + G +  A  + +
Sbjct: 323 VLTSLMLACSQLGNLDLA-KWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFE 381

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELA-EIAAKHLSE-LEPESAANNMLLT 559
            M    DL  + +++     HG+ + A  +  + L E L P+  A  ++LT
Sbjct: 382 KMPKR-DLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILT 431


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 272/475 (57%), Gaps = 44/475 (9%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  +FD++P+ N+  W  +   +A+ G  ++A+ +F +M + G   + F   SVL AC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---GSVEKAKKVFDEMVEKDIVAM 248
           L  +  G+++HS V++     D  V  SL+DMY+KC   GSV+ ++KVF++M E ++++ 
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 249 NAMVSGYVQRG-LATEALNLVEEIGTPRVKPNVVTW------------------------ 283
            A+++ Y Q G    EA+ L  ++ +  ++PN  ++                        
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 284 -----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                      N+LIS +++SG      K F ++     E ++VS+ +++ G   N  ++
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDIL----FEKNLVSYNAIVDGYAKNLKSE 239

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EAF  F E+   G   ++ T +S+L   AS   M +G++IHG  +  G + +  + +AL+
Sbjct: 240 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 299

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
            MY++CG I  A  +F++M +RN ++W SMI G A HG+   A+E+F++M E   K + +
Sbjct: 300 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 359

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           ++ AVL+AC HVG++  GQ+ FN M +++ I+PR EHYACMVDLLGR+G L EA E I +
Sbjct: 360 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 419

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M    D  VW  LLGAC+ HGN EL   AA+ + E EP+  A  +LL++L+A+AG
Sbjct: 420 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 474



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 181/378 (47%), Gaps = 45/378 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIAL 150
           L  GK LH+++I  GLA    +   L+  Y +C    ++  +R +F+++P+ N+  W A+
Sbjct: 67  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126

Query: 151 TGAYARRGY-HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
             AYA+ G   +EA+ +F +M    ++ N F   SVLKACG+LSD  TGE+++S  +K  
Sbjct: 127 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 186

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             +   V +SLI MY++ G +E A+K FD + EK++V+ NA+V GY +   + EA  L  
Sbjct: 187 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 246

Query: 270 EIGTPRV-----------------------------------KPNVVTWNTLISGFSKSG 294
           EI    +                                   K N    N LIS +S+ G
Sbjct: 247 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 306

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           +     ++F  M  +    +V+SWTS+I+G   +     A + F +ML  G  P   T  
Sbjct: 307 NIEAAFQVFNEMEDR----NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 362

Query: 355 SILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS- 412
           ++L AC+    +  G K  +      G+   +   + +VD+  + G + EA    + M  
Sbjct: 363 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 422

Query: 413 ERNTVTWNSMIFGCANHG 430
             + + W +++  C  HG
Sbjct: 423 MADALVWRTLLGACRVHG 440



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 159/324 (49%), Gaps = 7/324 (2%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G+ +++  +  G+A +  +   LI+ Y     +  AR  FD + + N+  + A+   YA
Sbjct: 174 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 233

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +    +EA  +F+E+   G+  + F   S+L     +  +G GE+IH  +LK  + ++  
Sbjct: 234 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 293

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++LI MYS+CG++E A +VF+EM ++++++  +M++G+ + G AT AL +  ++    
Sbjct: 294 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 353

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            KPN +T+  ++S  S  G      K F  M +  G+ P +  +  ++  L  +    EA
Sbjct: 354 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 413

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV-D 393
            +    M        +    ++L AC    N   G+  H   +++  E D      L+ +
Sbjct: 414 MEFINSM---PLMADALVWRTLLGACRVHGNTELGR--HAAEMILEQEPDDPAAYILLSN 468

Query: 394 MYAKCGFISEARTLFDKMSERNTV 417
           ++A  G   +   +   M ERN +
Sbjct: 469 LHASAGQWKDVVKIRKSMKERNLI 492



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+ +H +L+  G      I   LI+ Y+ C NI  A  +F+E+   N+  W ++  
Sbjct: 272 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 331

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A+ G+   A+ +FH+M   G K N     +VL AC H+  I  G+K  +S+  +H   
Sbjct: 332 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 391

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                 + ++D+  + G + +A +  + M
Sbjct: 392 PRMEHYACMVDLLGRSGLLVEAMEFINSM 420


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 272/475 (57%), Gaps = 44/475 (9%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  +FD++P+ N+  W  +   +A+ G  ++A+ +F +M + G   + F   SVL AC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---GSVEKAKKVFDEMVEKDIVAM 248
           L  +  G+++HS V++     D  V  SL+DMY+KC   GSV+ ++KVF++M E ++++ 
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 249 NAMVSGYVQRG-LATEALNLVEEIGTPRVKPNVVTW------------------------ 283
            A+++ Y Q G    EA+ L  ++ +  ++PN  ++                        
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 284 -----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                      N+LIS +++SG      K F ++     E ++VS+ +++ G   N  ++
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDIL----FEKNLVSYNAIVDGYAKNLKSE 244

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EAF  F E+   G   ++ T +S+L   AS   M +G++IHG  +  G + +  + +AL+
Sbjct: 245 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 304

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
            MY++CG I  A  +F++M +RN ++W SMI G A HG+   A+E+F++M E   K + +
Sbjct: 305 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 364

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           ++ AVL+AC HVG++  GQ+ FN M +++ I+PR EHYACMVDLLGR+G L EA E I +
Sbjct: 365 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 424

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M    D  VW  LLGAC+ HGN EL   AA+ + E EP+  A  +LL++L+A+AG
Sbjct: 425 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 479



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 181/378 (47%), Gaps = 45/378 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIAL 150
           L  GK LH+++I  GLA    +   L+  Y +C    ++  +R +F+++P+ N+  W A+
Sbjct: 72  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131

Query: 151 TGAYARRGY-HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
             AYA+ G   +EA+ +F +M    ++ N F   SVLKACG+LSD  TGE+++S  +K  
Sbjct: 132 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 191

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             +   V +SLI MY++ G +E A+K FD + EK++V+ NA+V GY +   + EA  L  
Sbjct: 192 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 251

Query: 270 EIGTPRV-----------------------------------KPNVVTWNTLISGFSKSG 294
           EI    +                                   K N    N LIS +S+ G
Sbjct: 252 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 311

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           +     ++F  M  +    +V+SWTS+I+G   +     A + F +ML  G  P   T  
Sbjct: 312 NIEAAFQVFNEMEDR----NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 367

Query: 355 SILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS- 412
           ++L AC+    +  G K  +      G+   +   + +VD+  + G + EA    + M  
Sbjct: 368 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 427

Query: 413 ERNTVTWNSMIFGCANHG 430
             + + W +++  C  HG
Sbjct: 428 MADALVWRTLLGACRVHG 445



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 159/324 (49%), Gaps = 7/324 (2%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G+ +++  +  G+A +  +   LI+ Y     +  AR  FD + + N+  + A+   YA
Sbjct: 179 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 238

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +    +EA  +F+E+   G+  + F   S+L     +  +G GE+IH  +LK  + ++  
Sbjct: 239 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 298

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++LI MYS+CG++E A +VF+EM ++++++  +M++G+ + G AT AL +  ++    
Sbjct: 299 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 358

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            KPN +T+  ++S  S  G      K F  M +  G+ P +  +  ++  L  +    EA
Sbjct: 359 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 418

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV-D 393
            +    M        +    ++L AC    N   G+  H   +++  E D      L+ +
Sbjct: 419 MEFINSM---PLMADALVWRTLLGACRVHGNTELGR--HAAEMILEQEPDDPAAYILLSN 473

Query: 394 MYAKCGFISEARTLFDKMSERNTV 417
           ++A  G   +   +   M ERN +
Sbjct: 474 LHASAGQWKDVVKIRKSMKERNLI 497



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+ +H +L+  G      I   LI+ Y+ C NI  A  +F+E+   N+  W ++  
Sbjct: 277 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 336

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A+ G+   A+ +FH+M   G K N     +VL AC H+  I  G+K  +S+  +H   
Sbjct: 337 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 396

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                 + ++D+  + G + +A +  + M
Sbjct: 397 PRMEHYACMVDLLGRSGLLVEAMEFINSM 425


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 279/541 (51%), Gaps = 76/541 (14%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF---YTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           +++HAQ+I +GL       +KLI F         + +A  +F+ I + N+  W  +   +
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A       A+ ++  M   GL  N +  P +LK+C        G++IH  VLK  +  D 
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFD-------------------------------EMVEK 243
           +V +SLI MY + G +E A+KVFD                               E+  K
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN----------------------VV 281
           D+V+ NAM+SGY + G   EAL L +E+    V+P+                      V 
Sbjct: 184 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 243

Query: 282 TW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
           +W             N LI  + K G+      LF+ +  K    DV+SW ++I G  H 
Sbjct: 244 SWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK----DVISWNTLIGGYTHM 299

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMGVEGDLH 386
               EA   F+EML  G  P   T+ SILPACA    +  G+ IH      + GV     
Sbjct: 300 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 359

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
            R++L+DMYAKCG I  A+ +FD +  R+  +WN+MIFG A HG  + A ++F++M + +
Sbjct: 360 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 419

Query: 447 -KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + D ++F  +L+AC H G+++LG+ +F  M+E YKI P+ EHY CM+DLLG +G   EA
Sbjct: 420 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEA 479

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            EMI TM  EPD  +W +LL ACK HGN+EL E  A++L ++EP++  + +LL+++YA A
Sbjct: 480 EEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATA 539

Query: 566 G 566
           G
Sbjct: 540 G 540



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 185/430 (43%), Gaps = 56/430 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K    G  I  H    ++   + L    ++  I +Y+++  L+  + 
Sbjct: 94  LLKSCAKS-----KAFREGQQIHGH----VLKLGYDLDLYVHTSLISMYVQNGRLEDARK 144

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +  Q       R     T LIT Y     I  A+ +FDEIP  ++  W A+   YA  G 
Sbjct: 145 VFDQ----SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGN 200

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++EA+ +F EM    ++ +   + SV+ AC   + I  G ++HS +  H FG++  +V++
Sbjct: 201 NKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNA 260

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID+Y KCG VE A  +F+ +  KD+++ N ++ GY    L  EAL L +E+      PN
Sbjct: 261 LIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 320

Query: 280 VVT------------------W-------------------NTLISGFSKSGDQVMVSKL 302
            VT                  W                    +LI  ++K GD     ++
Sbjct: 321 DVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQV 380

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  +  + +     SW ++I G   +   + AFD F  M      P   T   +L AC+ 
Sbjct: 381 FDSILNRSLS----SWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSH 436

Query: 363 AANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
           +  +  G+ I         +   L     ++D+    G   EA  + + M  E + V W 
Sbjct: 437 SGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWC 496

Query: 421 SMIFGCANHG 430
           S++  C  HG
Sbjct: 497 SLLKACKMHG 506


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 280/531 (52%), Gaps = 34/531 (6%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           ++   F      +S+ ++     + L +GK +H Q IV   +    + T L+  Y +C  
Sbjct: 145 LMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQ-IVKVPSFDNVVLTGLLDMYAKCGE 203

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I  +  +F++I   N+  W ++   Y +   ++E + +F+ M    +  N +   +++ A
Sbjct: 204 IKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMA 263

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  L  +  G+  H  ++K      + +V+SL+DMY KCG +  A++VF+E    D+V  
Sbjct: 264 CTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMW 323

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV----------- 297
            AM+ GY   G   EAL+L +++    +KPN VT  +++SG    G+             
Sbjct: 324 TAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIK 383

Query: 298 --------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTF 338
                         M +K +Q   AK V     E D+V+W S+ISG   N    EA   F
Sbjct: 384 VGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLF 443

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYA 396
             M ++   P   T++S+  ACAS  ++  G  +H  ++ +G      +HV +AL+D YA
Sbjct: 444 HRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYA 503

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTA 455
           KCG    AR +FD + E+NT+TW++MI G    G    ++ELF +M ++++K +  +FT+
Sbjct: 504 KCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTS 563

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           VL+AC H G+V  G++ F+ M + Y   P T+HY CMVD+L RAG L +A ++I+ M  +
Sbjct: 564 VLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQ 623

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           PD+  +GA L  C  H   +L EI  K + +L P+ A+  +L+++LYA+ G
Sbjct: 624 PDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDG 674



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 228/469 (48%), Gaps = 38/469 (8%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           H  L  +GL     IATKL++ Y        AR++FD+IP+ + + W  +   Y      
Sbjct: 76  HGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNES 135

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSS 219
            E +  +  +   G   +  V    LKAC  + D+  G+KIH  ++K  SF  D  V++ 
Sbjct: 136 FEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSF--DNVVLTG 193

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+DMY+KCG ++ + KVF+++  +++V   +M++GYV+  L  E L L   +    V  N
Sbjct: 194 LLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGN 253

Query: 280 VVTWNTLISGFS----------------KSGDQV---MVSKLFQLMRAKG---------- 310
             T+ TL+   +                KSG ++   +V+ L  +    G          
Sbjct: 254 EYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFN 313

Query: 311 --VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
                D+V WT++I G  HN   +EA   F++M   G  P   TI+S+L  C    N+  
Sbjct: 314 EHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLEL 373

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           G+ IHG +I +G+  D +V +ALV MYAKC    +A+ +F+  SE++ V WNS+I G + 
Sbjct: 374 GRSIHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQ 432

Query: 429 HGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           +G   EA+ LF++M     + + ++  ++ +AC  +G + +G  L     +   +   + 
Sbjct: 433 NGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSV 492

Query: 488 HYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           H    ++D   + G  AE+  +I     E +   W A++G     G+ +
Sbjct: 493 HVGTALLDFYAKCGD-AESARLIFDTIEEKNTITWSAMIGGYGKQGDTK 540



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 155/329 (47%), Gaps = 18/329 (5%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H   I  G+   T +A  L+  Y +C     A+ +F+   + +I  W ++   
Sbjct: 371 LELGRSIHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISG 429

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF--G 211
           +++ G   EA+ +FH M+ + +  N   + S+  AC  L  +  G  +H+  +K  F   
Sbjct: 430 FSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLAS 489

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +   V ++L+D Y+KCG  E A+ +FD + EK+ +  +AM+ GY ++G    +L L EE+
Sbjct: 490 SSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEM 549

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFC 330
              + KPN  T+ +++S  S +G      K F  M +     P    +T ++  L     
Sbjct: 550 LKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGE 609

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            ++A D  ++M  Q   P      + L  C   +    G+      IV+    DLH   A
Sbjct: 610 LEQALDIIEKMPIQ---PDVRCFGAFLHGCGMHSRFDLGE------IVIKKMLDLHPDDA 660

Query: 391 -----LVDMYAKCGFISEARTLFDKMSER 414
                + ++YA  G  S+A+ + + M +R
Sbjct: 661 SYYVLVSNLYASDGRWSQAKEVRNLMKQR 689



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 38/288 (13%)

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------EPDVVSW 318
           I + R    V+T N L+      GD  + +KL  L  + G             EPD   W
Sbjct: 69  IDSLRQAHGVLTGNGLM------GDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLW 122

Query: 319 TSVISGLVHNFC-NDEAFDTFK---EMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
             ++      +C N+E+F+  K    ++  GF       S  L AC    ++  GK+IH 
Sbjct: 123 KVIL----RCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIH- 177

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
           C IV     D  V + L+DMYAKCG I  +  +F+ ++ RN V W SMI G   +   +E
Sbjct: 178 CQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEE 237

Query: 435 AIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
            + LFN+M E   L +  ++  ++ AC  +  +  G+     +     I    E  +C+V
Sbjct: 238 GLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCL-----IKSGIELSSCLV 292

Query: 494 ----DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
               D+  + G ++ A  +    S   DL +W A++    ++G++  A
Sbjct: 293 TSLLDMYVKCGDISNARRVFNEHS-HVDLVMWTAMIVGYTHNGSVNEA 339



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L  C +  ++R+    HG     G+ GD+ + + LV +Y   G+  +AR +FD++ E +
Sbjct: 62  LLSKCTNIDSLRQA---HGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPD 118

Query: 416 TVTWNSMIFGCANHGYC--DEAIELFN----QMEERKKLDHLSFTAVLTACCHVGLVELG 469
              W  +I  C    YC  +E+ E+       M+     D + F+  L AC  V  ++ G
Sbjct: 119 FYLWK-VILRC----YCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNG 173

Query: 470 QRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-G 526
           +++   + +    +P  ++     ++D+  + G +  +Y++ + + T  ++  W +++ G
Sbjct: 174 KKIHCQIVK----VPSFDNVVLTGLLDMYAKCGEIKSSYKVFEDI-TLRNVVCWTSMIAG 228

Query: 527 ACKN 530
             KN
Sbjct: 229 YVKN 232


>gi|222631343|gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japonica Group]
          Length = 490

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/461 (37%), Positives = 249/461 (54%), Gaps = 43/461 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHA-----RMLFDEIPKTNIHRW 147
           L+ G    A+ ++ G+   T +  + LI  +    +   A     RM  D + + N+  W
Sbjct: 66  LRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGV-EPNVITW 124

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             L     R G  ++AV     MH +G   +   +   L A G + D+  GE++H  V+K
Sbjct: 125 NGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK 184

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                DA V ++LIDMY KCG  ++  +VFDE    D+ + NA                 
Sbjct: 185 AGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNA----------------- 227

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                             L++G S++       +LF+    +G+E +VVSWTS+++  V 
Sbjct: 228 ------------------LVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQ 269

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N  + EA D F+EM S+G  P S TI  +LPA A+ A +  G+  H  ++  G   D++V
Sbjct: 270 NGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYV 329

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
            SALVDMYAKCG + +AR +F+ M  RN V+WN+MI G A HG  + A+ LF  M+  K 
Sbjct: 330 GSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKE 389

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           K D ++FT VL AC   G  E G+  FN MQ K+ I PR EHY+CMV LLGRAG+L +AY
Sbjct: 390 KPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYSCMVTLLGRAGKLDDAY 449

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           ++I  M  EPD  +WG+LLG C+ HGN+ LAE+AA++L +L
Sbjct: 450 DIINQMPFEPDGCIWGSLLGPCRVHGNVVLAEVAAENLFQL 490



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           GV  D  V S+L+  Y + G  ++AR++ D M  R  V W+++I   A+HG  + A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 440 NQME 443
            +M 
Sbjct: 110 ERMR 113


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/504 (32%), Positives = 263/504 (52%), Gaps = 41/504 (8%)

Query: 98   KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
            K +H  +   G      +   LI  Y +   +  A  LFDE+   ++  W ++       
Sbjct: 573  KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMN 632

Query: 158  GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
            G+   A+  F +M I  +  ++  + + + AC ++  +  G  +H   +K  F  +    
Sbjct: 633  GFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFN 692

Query: 218  SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
            ++L+DMYSKCG++  A + F++M +K +V+  ++++ YV+ GL  +A+ L  E+ +  V 
Sbjct: 693  NTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVS 752

Query: 278  PNVVTW-----------------------------------NTLISGFSKSGDQVMVSKL 302
            P+V +                                    N L+  ++K G       +
Sbjct: 753  PDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLV 812

Query: 303  FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
            F  +  K    D+VSW ++I G   N   +EA   F EM  +   P   T++ +LPAC S
Sbjct: 813  FSQIPVK----DIVSWNTMIGGYSKNSLPNEALKLFAEMQKESR-PDGITMACLLPACGS 867

Query: 363  AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             A +  G+ IHGC +  G   +LHV +AL+DMY KCG +  AR LFD + E++ +TW  M
Sbjct: 868  LAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVM 927

Query: 423  IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
            I GC  HG  +EAI  F +M     K D ++FT++L AC H GL+  G   FN M  +  
Sbjct: 928  ISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECN 987

Query: 482  IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
            + P+ EHYACMVDLL R G L++AY +I+TM  +PD  +WGALL  C+ H ++ELAE  A
Sbjct: 988  MEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVA 1047

Query: 542  KHLSELEPESAANNMLLTDLYANA 565
            +H+ ELEP++A   +LL ++YA A
Sbjct: 1048 EHVFELEPDNAGYYVLLANIYAEA 1071



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/521 (28%), Positives = 258/521 (49%), Gaps = 48/521 (9%)

Query: 70  ISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           +S+   L   AYS  +++    + LQ GK++H+ +  +G+     +  KL+  Y  C  +
Sbjct: 443 MSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGAL 502

Query: 130 HHARMLFDEIPKTN-IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
              R +FD I   N +  W  +   YA+ G ++E++ +F +M   G+  N +    +LK 
Sbjct: 503 REGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKC 562

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
              L  +G  ++IH  V K  FG+   VV+SLI  Y K G V+ A K+FDE+ ++D+V+ 
Sbjct: 563 FATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSW 622

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------- 283
           N+M+SG V  G +  AL    ++   RV  ++ T                          
Sbjct: 623 NSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVK 682

Query: 284 ----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                     NTL+  +SK G+     + F+ M  K     VVSWTS+I+  V     D+
Sbjct: 683 ACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQK----TVVSWTSLIAAYVREGLYDD 738

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   F EM S+G  P   +++S+L ACA   ++ +G+++H       +   L V +AL+D
Sbjct: 739 AIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMD 798

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF 453
           MYAKCG + EA  +F ++  ++ V+WN+MI G + +   +EA++LF +M++  + D ++ 
Sbjct: 799 MYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGITM 858

Query: 454 TAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKT 511
             +L AC  +  +E+G+ +   +++  Y       H A  ++D+  + G L  A  ++  
Sbjct: 859 ACLLPACGSLAALEIGRGIHGCILRNGY---SSELHVANALIDMYVKCGSLVHA-RLLFD 914

Query: 512 MSTEPDLFVWGALLGACKNH--GNIELAEIAAKHLSELEPE 550
           M  E DL  W  ++  C  H  GN  +A      ++ ++P+
Sbjct: 915 MIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPD 955



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 181/374 (48%), Gaps = 42/374 (11%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            +L  G+ LH Q + +  +R       L+  Y++C N++ A   F+++ +  +  W +L  
Sbjct: 669  SLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIA 728

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            AY R G + +A+ +F+EM  +G+  +++ + SVL AC   + +  G  +H+ + K++   
Sbjct: 729  AYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMAL 788

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
               V ++L+DMY+KCGS+E+A  VF ++  KDIV+ N M+ GY +  L  EAL L  E+ 
Sbjct: 789  CLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM- 847

Query: 273  TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
                +P+ +T                                    N LI  + K G  V
Sbjct: 848  QKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLV 907

Query: 298  MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
                LF ++     E D+++WT +ISG   +   +EA  TF++M   G  P   T +SIL
Sbjct: 908  HARLLFDMIP----EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSIL 963

Query: 358  PACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
             AC+ +  +  G       I    +E  L   + +VD+ A+ G +S+A  L + M  +  
Sbjct: 964  YACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPD 1023

Query: 417  VT-WNSMIFGCANH 429
             T W +++ GC  H
Sbjct: 1024 ATIWGALLCGCRIH 1037



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 196/420 (46%), Gaps = 46/420 (10%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L+ C     +  G+ +HS++  +    +  + + L+ MY  CG++ + +++FD ++  
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSD 515

Query: 244 DIVAM-NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------- 283
           + V + N M+S Y + G   E++ L +++    +  N  T+                   
Sbjct: 516 NKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRI 575

Query: 284 ----------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                           N+LI+ + KSG+     KLF  +  +    DVVSW S+ISG V 
Sbjct: 576 HGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDR----DVVSWNSMISGCVM 631

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N  +  A + F +ML        AT+ + + ACA+  ++  G+ +HG  +      ++  
Sbjct: 632 NGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMF 691

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
            + L+DMY+KCG +++A   F+KM ++  V+W S+I      G  D+AI LF +ME +  
Sbjct: 692 NNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGV 751

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
             D  S T+VL AC     ++ G+ + N +++    +      A M D+  + G + EAY
Sbjct: 752 SPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALM-DMYAKCGSMEEAY 810

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +   +  + D+  W  ++G    +    L   A K  +E++ ES  + + +  L    G
Sbjct: 811 LVFSQIPVK-DIVSWNTMIGG---YSKNSLPNEALKLFAEMQKESRPDGITMACLLPACG 866


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/507 (35%), Positives = 279/507 (55%), Gaps = 40/507 (7%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G  LH  +I SG     Q+A  L+  Y++C N+ +AR LF+ +P+T+   W  L   Y 
Sbjct: 231 AGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYV 290

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G+  EA  +F+ M   G+K +     S L +      +   +++HS +++H    D +
Sbjct: 291 QNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVY 350

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVEE- 270
           + S+LID+Y K G VE A+K+F + +  D+    AM+SGYV  GL  +A+N    L++E 
Sbjct: 351 LKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEG 410

Query: 271 ---------------IGTPRVKP--------------NVVTWNTLISG-FSKSGDQVMVS 300
                               +KP              N+V   + I+  ++K G   +  
Sbjct: 411 MVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAY 470

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           + F+ M  +    D V W S+IS    N   + A D F++M   G    S ++SS L A 
Sbjct: 471 EFFRRMSDR----DSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAA 526

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           A+   +  GKE+HG  I      D  V S L+DMY+KCG ++ A  +F+ M  +N V+WN
Sbjct: 527 ANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWN 586

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           S+I    NHG   E ++L+++M       DH++F  +++AC H GLV+ G   F+ M  +
Sbjct: 587 SIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTRE 646

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y I  R EHYACMVDL GRAGR+ EA++ IK+M   PD  VWG LLGAC+ HGN+ELA++
Sbjct: 647 YGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKL 706

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           A++HL EL+P+++   +LL++++A+AG
Sbjct: 707 ASRHLLELDPKNSGYYVLLSNVHADAG 733



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 222/453 (49%), Gaps = 42/453 (9%)

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
            + LI  Y +   I  AR +FDE+P  +   W  +   Y + G    A+  F EM     
Sbjct: 150 GSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYS 209

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
             N      +L  C    +   G ++H LV+   F  D  V ++L+ MYSKCG++  A+K
Sbjct: 210 MVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARK 269

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------ 283
           +F+ M + D V  N +++GYVQ G   EA  L   + +  VKP+ VT+            
Sbjct: 270 LFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGS 329

Query: 284 -----------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
                                  + LI  + K GD  M  K+FQ    + +  DV   T+
Sbjct: 330 LRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQ----QNILVDVAVCTA 385

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +ISG V +  N +A +TF+ ++ +G    S T++S+LPACA+ A ++ GKE+H   +   
Sbjct: 386 MISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKR 445

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           +E  ++V SA+ DMYAKCG +  A   F +MS+R++V WNSMI   + +G  + AI+LF 
Sbjct: 446 LENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFR 505

Query: 441 QME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           QM     K D +S ++ L+A  ++  +  G+ +   +         T   + ++D+  + 
Sbjct: 506 QMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRN-AFSSDTFVASTLIDMYSKC 564

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           G LA A+ +   M  + ++  W +++ A  NHG
Sbjct: 565 GNLALAWCVFNLMDGKNEV-SWNSIIAAYGNHG 596



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 220/480 (45%), Gaps = 42/480 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +Q  + +H Q+IV G+  +   +++++  Y  C     A  LF E+       W  +   
Sbjct: 27  VQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRG 86

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
               G+   A+  + +M    +  + +  P V+KACG L+++     +H       F  D
Sbjct: 87  LYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVD 146

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F  S+LI +Y+  G +  A++VFDE+  +D +  N M+ GYV+ G    A+    E+ T
Sbjct: 147 LFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRT 206

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
                N VT+                                   NTL++ +SK G+ + 
Sbjct: 207 SYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLY 266

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             KLF  M     + D V+W  +I+G V N   DEA   F  M+S G  P S T +S LP
Sbjct: 267 ARKLFNTMP----QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLP 322

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           +   + ++R  KE+H   +   V  D++++SAL+D+Y K G +  AR +F +    +   
Sbjct: 323 SILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAV 382

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
             +MI G   HG   +AI  F  + +E    + L+  +VL AC  V  ++ G+ L   + 
Sbjct: 383 CTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHIL 442

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +K ++       + + D+  + GRL  AYE  + MS + D   W +++ +   +G  E+A
Sbjct: 443 KK-RLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISSFSQNGKPEIA 500



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 163/379 (43%), Gaps = 46/379 (12%)

Query: 94  LQSGKILHAQLIVSGLARL-----TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           L+SG + H + + S + R        + + LI  Y +  ++  AR +F +    ++    
Sbjct: 325 LESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCT 384

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+   Y   G + +A+  F  +  +G+  N   + SVL AC  ++ +  G+++H  +LK 
Sbjct: 385 AMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKK 444

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
                  V S++ DMY+KCG ++ A + F  M ++D V  N+M+S + Q G    A++L 
Sbjct: 445 RLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLF 504

Query: 269 EEIGTPRVKPNVVTW-----------------------------------NTLISGFSKS 293
            ++G    K + V+                                    +TLI  +SK 
Sbjct: 505 RQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKC 564

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G+  +   +F LM  K    + VSW S+I+   ++ C  E  D + EML  G  P   T 
Sbjct: 565 GNLALAWCVFNLMDGK----NEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTF 620

Query: 354 SSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
             I+ AC  A  +  G     C     G+   +   + +VD+Y + G + EA      M 
Sbjct: 621 LVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMP 680

Query: 413 -ERNTVTWNSMIFGCANHG 430
              +   W +++  C  HG
Sbjct: 681 FTPDAGVWGTLLGACRLHG 699



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 140/284 (49%), Gaps = 14/284 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK LH  ++   L  +  + + +   Y +C  +  A   F  +   +   W ++  
Sbjct: 430 ALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMIS 489

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           ++++ G  + A+ +F +M + G K +   + S L A  +L  +  G+++H  V++++F +
Sbjct: 490 SFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSS 549

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV S+LIDMYSKCG++  A  VF+ M  K+ V+ N++++ Y   G   E L+L  E+ 
Sbjct: 550 DTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEML 609

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVI-----SGLV 326
              + P+ VT+  +IS    +G        F  M R  G+   +  +  ++     +G V
Sbjct: 610 RAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRV 669

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           H     EAFDT K M    F P +    ++L AC    N+   K
Sbjct: 670 H-----EAFDTIKSM---PFTPDAGVWGTLLGACRLHGNVELAK 705



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           +  + S+  AC+ A+ +++ +++H   IV G+       S ++ +Y  CG   +A  LF 
Sbjct: 11  TTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFF 70

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIEL-FNQMEERKKLDHLSFTAVLTACCHVGLVEL 468
           ++  R  + WN MI G    G+ D A+   F  +      D  +F  V+ AC  +  V L
Sbjct: 71  ELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPL 130


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/511 (34%), Positives = 267/511 (52%), Gaps = 48/511 (9%)

Query: 64  HYKMPIISRSFHLSPAAYSERIEIYIRDRA------LQSGKILHAQLIVSGLARLTQIAT 117
           H  + I  R  H SP  + ++       +A      L +GK  H  +I   L     I  
Sbjct: 117 HQSLLIFLRMLHQSPD-FPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILN 175

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            LI FY +C  +     +F  IP+ ++  W ++  A+ + G  +EA+ +F EM  Q +K 
Sbjct: 176 SLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKP 235

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N   +  VL AC   SD   G  +HS + ++  G    + ++++DMY+KCGSVE AK++F
Sbjct: 236 NGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLF 295

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           D+M EKDI                                   V+W T++ G++K G+  
Sbjct: 296 DKMPEKDI-----------------------------------VSWTTMLVGYAKIGEYD 320

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSI 356
               +F  M  +    D+ +W ++IS         EA + F E+ LS+   P   T+ S 
Sbjct: 321 AAQGIFDAMPNQ----DIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVST 376

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA    M  G  IH      G++ + H+ ++L+DMY KCG + +A  +F  +  ++ 
Sbjct: 377 LSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDV 436

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
             W++MI G A HG+  +AI LF++M+E K K + ++FT +L AC HVGLVE G+  FN 
Sbjct: 437 FVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQ 496

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M+  Y ++P  +HYACMVD+LGRAG L EA E+I+ M   P   VWGALLGAC  H N+ 
Sbjct: 497 MELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVV 556

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           LAE A   L ELEP +    +LL+++YA AG
Sbjct: 557 LAEQACSQLIELEPGNHGAYVLLSNIYAKAG 587



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 114/243 (46%), Gaps = 11/243 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G  +H  +   G+     + T LI  Y +C ++  A M+F  + + ++  W A+  
Sbjct: 385 AMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIA 444

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
             A  G+ ++A+ +F +M    +K N     ++L AC H+  +  G    + + L +   
Sbjct: 445 GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVL 504

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT--EALNLVE 269
                 + ++D+  + G +E+A     E++EK  +A  A V G +  G  T  E + L E
Sbjct: 505 PGVKHYACMVDILGRAGLLEEAV----ELIEKMPMAPAASVWGAL-LGACTIHENVVLAE 559

Query: 270 EIGTP--RVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           +  +    ++P       L+S  ++K+G    VS L +LMR  G++ +    +  + G+V
Sbjct: 560 QACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIV 619

Query: 327 HNF 329
           H F
Sbjct: 620 HEF 622


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/511 (32%), Positives = 271/511 (53%), Gaps = 43/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L SG+ LH   +  G+     + + L + Y++C +   A  LF E+P+ ++  W +L G 
Sbjct: 235 LNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGI 294

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y  RG  +EA+ +F EM   GL+ +  ++  +L   G+  ++  G+  H++++K +FG +
Sbjct: 295 YCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDN 354

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--- 270
             V ++LI MY K   V+ A +VF  + ++D  + N M+ GY + G   + L L  E   
Sbjct: 355 VLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQF 414

Query: 271 ---------------------------IGTPRVKPNVVTW--------NTLISGFSKSGD 295
                                      +G      ++  W        N LI  + + G 
Sbjct: 415 RDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGK 474

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                K+F L + KG   DVV+W ++IS   H   ++ A   + +ML++G  P S T+ +
Sbjct: 475 FDHACKIFGLAKLKG---DVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLIT 531

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           ++ ACA+   + RG++IH     MG + D+ + +AL+DMYAKCG +  AR +FD M + +
Sbjct: 532 VISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHD 591

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V WN MI G   HG   +A+ELF +ME    K + ++F A+L+ACCH GL+E G++LF 
Sbjct: 592 VVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFT 651

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M  KY + P  +HYACMVDLLG++G L EA +M+  M  EPD  +WG LL ACK H + 
Sbjct: 652 RMG-KYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDF 710

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           E+    AK     + E+    +L+++ Y +A
Sbjct: 711 EMGLRIAKKAFASDAENEGYYILISNSYGSA 741



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 226/489 (46%), Gaps = 54/489 (11%)

Query: 97  GKILHAQLIVSGLARL----TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           G  +HA  +  GL  +      + + L+  Y  C  +  A  LF+E+ + ++  W A+  
Sbjct: 129 GASVHAYCVRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVS 188

Query: 153 AYARRGYHQEAVTVFHEM-HIQG---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
              R G   + +    EM  + G    + N   + S L+ACG L ++ +G  +H   +K 
Sbjct: 189 GCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKV 248

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
             G    V+S+L  MYSKC S E A  +F E+ EKD+V+  +++  Y  RGL  EA+ L 
Sbjct: 249 GVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELF 308

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKS------------------GDQVMVSKL-------F 303
           +E+    ++P+ V  + L+SG   S                  GD V+V          F
Sbjct: 309 QEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKF 368

Query: 304 QLMRAKGV------EPDVVSWTSVISGLVHNFCNDEAFDTFKEM----LSQGFCPTSATI 353
           +L+   G       + D  SW  +I G     C+ +  + ++EM      +  C  ++ +
Sbjct: 369 ELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLV 428

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           S+I  +C+    +R G+  H  +I   ++ D  V + L+ MY +CG    A  +F     
Sbjct: 429 SAI-SSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKL 487

Query: 414 R-NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQR 471
           + + VTWN++I   A+ G+ + A+ L++QM  E    +  +   V++AC ++  +E G++
Sbjct: 488 KGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEK 547

Query: 472 LFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           + + ++E    Y +   T     ++D+  + G+L  A  +  +M  + D+  W  ++   
Sbjct: 548 IHSYVKEMGWDYDVSINTA----LIDMYAKCGQLGTARRIFDSM-LQHDVVAWNVMISGY 602

Query: 529 KNHGNIELA 537
             HG  + A
Sbjct: 603 GMHGEAKQA 611



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 207/470 (44%), Gaps = 46/470 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA  + SGL++   I  KL++ Y+       A + F   P+ +   W +L   +     
Sbjct: 31  VHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCASD 90

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF----GTDAF 215
              A+     M     + + F +P    A   L  +G G  +H+  +++      G    
Sbjct: 91  FVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGGSVA 150

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI---- 271
           V SSL+ MY++CG V  A K+F+EM E+D+VA  A+VSG V+ G   + L  + E+    
Sbjct: 151 VPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLA 210

Query: 272 GTPRVKPNVVTWNT---------------LISGFSKS---GDQVMV-SKLFQL------- 305
           G  + +PN  T  +                + G++     GD  MV S LF +       
Sbjct: 211 GDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHST 270

Query: 306 -----MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                +  +  E DVVSWTS+I          EA + F+EM+  G  P    +S +L   
Sbjct: 271 EDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGL 330

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            ++ N+  GK  H   +      ++ V +AL+ MY K   +  A  +F  + +R+  +WN
Sbjct: 331 GNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWN 390

Query: 421 SMIFGCANHGYCD-EAIELFNQMEERKKLDHL----SFTAVLTACCHVGLVELGQRLFNM 475
            MI G    G CD + +EL+ +M+ R   + L    S  + +++C  +  + LG R  + 
Sbjct: 391 LMIVGYCKAG-CDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLG-RSAHC 448

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
              K+ +   +     ++ + GR G+   A ++      + D+  W  L+
Sbjct: 449 YSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLI 498



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 125/314 (39%), Gaps = 51/314 (16%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H+L +         +V+ L+  YS  G    A   F      D    N+++  +    
Sbjct: 30  RVHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCAS 89

Query: 260 LATEALNLVEEIGTPRVKP---------------------------------------NV 280
               ALN    +     +P                                       +V
Sbjct: 90  DFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGGSV 149

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
              ++L+  +++ G      KLF+ MR    E DVV+WT+V+SG V N    +      E
Sbjct: 150 AVPSSLVYMYARCGVVRDAVKLFEEMR----ERDVVAWTAVVSGCVRNGECGDGLRYLVE 205

Query: 341 ML---SQGFC-PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
           M+     G   P S T+ S L AC     +  G+ +HG A+ +GV     V SAL  MY+
Sbjct: 206 MVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYS 265

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAV 456
           KC    +A +LF ++ E++ V+W S+I      G   EA+ELF +M E      L    V
Sbjct: 266 KCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESG----LQPDDV 321

Query: 457 LTACCHVGLVELGQ 470
           L +C   GL   G 
Sbjct: 322 LVSCLLSGLGNSGN 335



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 1/153 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H+ +   G      I T LI  Y +C  +  AR +FD + + ++  W  +  
Sbjct: 541 ALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMIS 600

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G  ++A+ +F +M    +K N     ++L AC H   +  G ++ + + K+S   
Sbjct: 601 GYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEP 660

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKD 244
           +    + ++D+  K G +++A+ +   M VE D
Sbjct: 661 NLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPD 693


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 278/485 (57%), Gaps = 8/485 (1%)

Query: 86  EIYIRDRALQSGKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           +I  ++  ++  K LH+++ +   L     +  KL+  Y  C      R +FDEIPK N+
Sbjct: 43  QILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNV 102

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             +  +  +Y     + +A+ VF  M   G+  + +  P VLKA     D+  G +IH+ 
Sbjct: 103 VFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAA 162

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V++     + FV + LI MY KCG + +A +V D+M  +D+V+ N++V+G  + G   +A
Sbjct: 163 VVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDA 222

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSG-DQV-MVSKLFQLMRAKGVEPDVVSWTSVI 322
           L + +E+    +KP+  T  +L+   + +  D V  V ++F  +  K +    VSW  +I
Sbjct: 223 LEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSL----VSWNVMI 278

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           +  ++N    EA D F +M      P + +I+S+LPAC   + +  G+ IH   +   ++
Sbjct: 279 AVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQ 338

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            +L + +AL+DMYAKCG +  AR +FD+M  R+ V+W SMI     +G   +A+ LF++M
Sbjct: 339 PNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRM 398

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           ++     D ++F +VL+AC H GL++ G+  F +M E+ KI+PR EH+ CMVDLLGRAG+
Sbjct: 399 QDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQ 458

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           + EAY  IK M  EP+  VWGALL AC+ + N+ +  +AA  L +L PE +   +LL+++
Sbjct: 459 VDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNI 518

Query: 562 YANAG 566
           YA AG
Sbjct: 519 YAKAG 523



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H  ++   L     +   LI  Y +C  + +AR +FD++   ++  W ++  
Sbjct: 321 ALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMIS 380

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE---KIHSLVLKHS 209
           AY   G  ++AV++F  M   GL  +     SVL AC H   +  G    K+ +   K  
Sbjct: 381 AYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIV 440

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLV 268
              + FV   ++D+  + G V++A     +M +E +     A++S    R  +   + L+
Sbjct: 441 PRIEHFV--CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC--RVYSNMIIGLL 496

Query: 269 EEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVE--PDVVSWTSVISGL 325
                 ++ P    +  L+S  ++K+G    V+ +  +M+ KG++  P V ++   +   
Sbjct: 497 AADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFE--LDNR 554

Query: 326 VHNF 329
           VH F
Sbjct: 555 VHTF 558


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 246/453 (54%), Gaps = 41/453 (9%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHR----WIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +I  Y E  N+  A+ LFD + +  + +    W ++   Y       EA ++F ++  +G
Sbjct: 205 MIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEG 264

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++ + F + SVL  C  ++ I  G++ HSL +     +++ V  +L++MYSKC  +  A+
Sbjct: 265 IEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQ 324

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
             FD + E+D+                                    TWN LISG+++  
Sbjct: 325 MAFDGVSERDLP-----------------------------------TWNALISGYARCN 349

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
               + +L Q MR  G EP+V +W  +I+G V N   D A   F EM      P   T+ 
Sbjct: 350 QAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVG 409

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
            IL AC+  A ++RGK++H  +I  G + D+H+ +ALVDMYAKCG +     +++ +S  
Sbjct: 410 IILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNP 469

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           N V+ N+M+   A HG+ +E I LF +M   K + DH++F AVL++C H G +E+G    
Sbjct: 470 NLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECL 529

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            +M   Y +MP  +HY CMVDLL RAG+L EAYE+IK + TE D   W ALLG C  H  
Sbjct: 530 ALMV-AYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNE 588

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++L EIAA+ L ELEP +  N ++L +LYA+AG
Sbjct: 589 VDLGEIAAEKLIELEPNNPGNYVMLANLYASAG 621



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 214/483 (44%), Gaps = 105/483 (21%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK LHA  I SG      + TKL+  Y    +  +A  +FD +P  N+H W AL   Y  
Sbjct: 67  GKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYIE 126

Query: 157 RGYHQEAVTVFHEMHIQGLK--QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            G+ +EA  +F ++  +G++   + FV P VLK C  L  +  G ++H + LKH      
Sbjct: 127 MGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHD----- 181

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
                        G ++ A ++F     K   + NAM                       
Sbjct: 182 -------------GDMKSAFEMFSRFSRKSAASYNAM----------------------- 205

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                       I+G+ ++G+     +LF  M  +GV+ D +SW S+ISG V     DEA
Sbjct: 206 ------------IAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEA 253

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
           +  F+++L +G  P S T+ S+L  CA  A++RRGKE H  AIV G++ +  V  ALV+M
Sbjct: 254 YSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEM 313

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN-------------------------- 428
           Y+KC  I  A+  FD +SER+  TWN++I G A                           
Sbjct: 314 YSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTW 373

Query: 429 ----HGYC-----DEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
                GY      D A++LF +M+    + D  +   +L AC  +  ++ G+++      
Sbjct: 374 NGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQV-----H 428

Query: 479 KYKIMPRTEHY------ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            Y I  R  H       A +VD+  + G +   Y  +  M + P+L    A+L A   HG
Sbjct: 429 AYSI--RAGHDSDVHIGAALVDMYAKCGDVKHCYR-VYNMISNPNLVSHNAMLTAYAMHG 485

Query: 533 NIE 535
           + E
Sbjct: 486 HGE 488



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 170/367 (46%), Gaps = 44/367 (11%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ GK  H+  IV GL   + +   L+  Y++CQ+I  A+M FD + + ++  W AL  
Sbjct: 284 SIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALIS 343

Query: 153 AYAR-------RGYHQE----------------------------AVTVFHEMHIQGLKQ 177
            YAR       R  HQ+                            A+ +F EM I  L+ 
Sbjct: 344 GYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRP 403

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +I+ +  +L AC  L+ I  G+++H+  ++    +D  + ++L+DMY+KCG V+   +V+
Sbjct: 404 DIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVY 463

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           + +   ++V+ NAM++ Y   G   E + L   +   +V+P+ VT+  ++S    +G   
Sbjct: 464 NMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLE 523

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           +  +   LM A  V P +  +T ++  L       EA++  K + ++     + T +++L
Sbjct: 524 IGHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEA---DAVTWNALL 580

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG---FISEARTLFDK--MS 412
             C     +  G EI    ++     +      L ++YA  G   ++++ R L     M 
Sbjct: 581 GGCFIHNEVDLG-EIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQ 639

Query: 413 ERNTVTW 419
           +R   +W
Sbjct: 640 KRPGCSW 646



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 16/256 (6%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   +Q GK +HA  I +G      I   L+  Y +C ++ H   +++ I   N+    A
Sbjct: 417 RLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNA 476

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +  AYA  G+ +E + +F  M    ++ +     +VL +C H   +  G +  +L++ ++
Sbjct: 477 MLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVAYN 536

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-----YVQRG-LAT 262
                   + ++D+ S+ G + +A ++   +  E D V  NA++ G      V  G +A 
Sbjct: 537 VMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAA 596

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           E L  +E    P    N V    L   ++ +G    +++  QLM+  G++     SW   
Sbjct: 597 EKLIELE----PNNPGNYVMLANL---YASAGKWHYLTQTRQLMKDMGMQKRPGCSWIED 649

Query: 322 ISGLVHNFCNDEAFDT 337
             G +H F   + + T
Sbjct: 650 RDG-IHVFVAKDIYHT 664



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 21/196 (10%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P+S T +SIL +C S      GK++H  +I  G      V + L+ MYA+      A  +
Sbjct: 49  PSSTTYASILDSCGSPI---LGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHV 105

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM---EERKKLDHLSFTAVLTACCHVG 464
           FD M  RN  +W +++      G+ +EA  LF Q+     R +LD   F  VL  CC + 
Sbjct: 106 FDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLC 165

Query: 465 LVELGQRLFNM-------MQEKYKIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTM 512
            VELG+++  M       M+  +++  R        Y  M+      G L +A E+   M
Sbjct: 166 AVELGRQMHGMALKHDGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRM 225

Query: 513 STE---PDLFVWGALL 525
             E    D   W +++
Sbjct: 226 EQEGVQKDRISWNSMI 241


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/505 (33%), Positives = 265/505 (52%), Gaps = 33/505 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G+++H  L   G      +   L+ FY +      A ++FD +P  ++  W ++  
Sbjct: 211 SIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMIS 270

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
                G + +A+ +F  M ++G + +   + SVL AC  L  +  G  +H   +K  F +
Sbjct: 271 GCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFIS 330

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              + + L+DMYS C       K+F  MV+K++V+  AM++ Y + GL  +   L +E+G
Sbjct: 331 QTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMG 390

Query: 273 TPRVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLM 306
               +P++    + +  F+     K G  V                     M  K   + 
Sbjct: 391 LEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNME 450

Query: 307 RAK-----GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            AK      V  D++SW ++I G   N   +EAF  F EML Q   P + T++ ILPA A
Sbjct: 451 EAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAA 509

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S +++ RG+E+H  A+  G   D  V +AL+DMY KCG +  AR LFD++S +N ++W  
Sbjct: 510 SLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTI 569

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+ G   HG   +AI LF QM       D  SF+A+L AC H GL + G R F+ M++++
Sbjct: 570 MVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEH 629

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           KI PR +HY CMVDLL   G L EAYE I +M  EPD  +W +LL  C+ H N++LAE  
Sbjct: 630 KIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEV 689

Query: 541 AKHLSELEPESAANNMLLTDLYANA 565
           A+ + ELEPE+    +LL ++YA A
Sbjct: 690 AERVFELEPENTGYYVLLANIYAEA 714



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 253/520 (48%), Gaps = 47/520 (9%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ---IATKLITFYTECQNIHHARMLF 136
           +Y   +++    R+L+ GK  H  +  S L R      +  KL+  Y +C ++ +AR +F
Sbjct: 93  SYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVF 152

Query: 137 DEIPK-TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           DE+P+ +++  W AL   YA+ G  +E V +F +MH  G++ + + I  VLK    L  I
Sbjct: 153 DEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSI 212

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             GE +H L+ K  FG+   V ++L+  Y+K    + A  VFD M  +D+++ N+M+SG 
Sbjct: 213 EDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGC 272

Query: 256 VQRGLATEALNLV-------EEIGTP------------------------RVKPNVVTW- 283
              GL  +A+ L        EE+ +                          VK   ++  
Sbjct: 273 TSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQT 332

Query: 284 ---NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
              N L+  +S   D    +K+F+ M    V+ +VVSWT++I+        D+    F+E
Sbjct: 333 SLANVLLDMYSNCSDWRSTNKIFRNM----VQKNVVSWTAMITSYTRAGLYDKVAGLFQE 388

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M  +G  P    I+S L A A    ++ GK +HG AI  G+E  L V +AL++MY KCG 
Sbjct: 389 MGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGN 448

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460
           + EA+ +FD +  ++ ++WN++I G + +   +EA  LF +M  + + + ++ T +L A 
Sbjct: 449 MEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAA 508

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
             +  +E G+ +      +  +       A ++D+  + G L  A  +   +S + +L  
Sbjct: 509 ASLSSLERGREMHAYALRRGYLEDDFVANA-LIDMYVKCGALLLARRLFDRLSNK-NLIS 566

Query: 521 WGALLGACKNHGNIE--LAEIAAKHLSELEPESAANNMLL 558
           W  ++     HG     +A      +S + P++A+ + +L
Sbjct: 567 WTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAIL 606


>gi|218186878|gb|EEC69305.1| hypothetical protein OsI_38371 [Oryza sativa Indica Group]
          Length = 560

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 263/477 (55%), Gaps = 24/477 (5%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KTNIHRWIALTGAYARR 157
           LHA L++ GL    + A  L+       +  HAR +FD +P    N++ W A   AYAR 
Sbjct: 30  LHAHLLIRGLPLPARAAVALVA---SSSSPRHARAVFDSVPAASANVYLWTATISAYARH 86

Query: 158 GYHQ---------EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
                        EAV +F  M   G + N F + SV+K C  +  +  G ++H+ + K 
Sbjct: 87  TSSSSSHALEVAGEAVALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKA 146

Query: 209 SFG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             G +   V ++L+D+Y   G V  A++VFDEM  K++V  N MV+  V+ G     +  
Sbjct: 147 GLGCSSVHVGAALLDLYGNIGLVGDARRVFDEMPVKNVVVGNTMVACNVRAG----DMGA 202

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
             E+     + + ++WNTL+SG+   GD   V +LF  M  + V     SW ++I+    
Sbjct: 203 AREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVN----SWNTMIAACSE 258

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                +    F  M + GF P +AT++ ++ ACA   ++    ++HG      VE + HV
Sbjct: 259 EGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHV 318

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
           +++L+DMYAKCG IS+A+ LF +   ++TV++N MI   A HG+  +A++LFN M +   
Sbjct: 319 QNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGL 378

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + D ++F  VL+AC H GLVE G+  F +M+  Y +    +HYAC+VDL GRAG + EA+
Sbjct: 379 QPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAH 438

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
             +KTM  +P   VWGALL AC+ H ++++ EIAAK L  +EP++  N +LL +  A
Sbjct: 439 CFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTLA 495


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 257/475 (54%), Gaps = 45/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA ++   L++ + + TK++          +A +LF  +   N   + A+  AY   
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90

Query: 158 GYHQEAVTVFHEMHIQGLKQNI-----FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             +  A+TV+ +M      +N      F  P V+K+C  L     G+++H  V K    +
Sbjct: 91  KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V +SL++MY KC S++ A +VF+EM E+D                            
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERD---------------------------- 182

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                   V+WNTLISG  + G       +F+ M+ K     + SWT+++SG     C  
Sbjct: 183 -------AVSWNTLISGHVRLGQMRRARAIFEEMQDK----TIFSWTAIVSGYARIGCYA 231

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +A + F+ M   G  P   ++ S+LP CA    +  GK IH  A   G   ++ V +AL+
Sbjct: 232 DALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALI 291

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           +MYAKCG I + R LFD+M ER+ ++W++MI G ANHG   EAIELF +M++ K +   +
Sbjct: 292 EMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSII 351

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  +LTAC H GL+  G R F  M+  Y I P  EHY C+V+LLG +GRL +A E++K 
Sbjct: 352 TFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKK 411

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  +PD  +WG+LL +C++HGN+++A IA +HL ELEP    N +LL++LYA+ G
Sbjct: 412 MPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLG 466



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 146/303 (48%), Gaps = 35/303 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNI--------------------------- 129
           GK +H  +   G    T +   L+  Y +C ++                           
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVR 195

Query: 130 ----HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
                 AR +F+E+    I  W A+   YAR G + +A+  F  M + G++ +   + SV
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L  C  L  +  G+ IH    K  F  +  V ++LI+MY+KCGS+++ +++FD+M E+D+
Sbjct: 256 LPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDV 315

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           ++ + M+ G    G A EA+ L +E+   +++P+++T+  L++  + +G      + F+ 
Sbjct: 316 ISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFES 375

Query: 306 M-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           M R   +EP V  +  +++ L  +   D+A +  K+M  +   P S    S+L +C S  
Sbjct: 376 MKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRK---PDSPIWGSLLSSCRSHG 432

Query: 365 NMR 367
           N++
Sbjct: 433 NLK 435



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 113/258 (43%), Gaps = 11/258 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H     +G  R   +   LI  Y +C +I   R LFD++ + ++  W  +  
Sbjct: 264 ALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIV 323

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G  +EA+ +F EM    ++ +I     +L AC H   +  G +     +K  +  
Sbjct: 324 GLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFE-SMKRDYNI 382

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRG---LATEALN 266
           +  V     L+++    G +++A ++  +M  K D     +++S     G   +A  A+ 
Sbjct: 383 EPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAME 442

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
            + E+  P    N V  + L +   K      VS++ +LMR+K ++      +  +  +V
Sbjct: 443 HLLEL-EPADTGNYVLLSNLYADLGKWDG---VSRMRKLMRSKSMKKTPGCSSIEVDNMV 498

Query: 327 HNFCNDEAFDTFKEMLSQ 344
             F + +    F + + +
Sbjct: 499 QEFASGDDSKPFSKAICR 516


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 250/469 (53%), Gaps = 36/469 (7%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H   I  G+     +   LI  Y +C+ +  AR +FD++   ++  W +++  Y   
Sbjct: 152 KEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNC 211

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G  +  + VF EM   G+K N   + S+L AC  L D+ +G  IH   ++H    + FV 
Sbjct: 212 GLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVC 271

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           S+L+ +Y++C SV++A+ VFD M  +D                                 
Sbjct: 272 SALVSLYARCLSVKQARLVFDLMPHRD--------------------------------- 298

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             VV+WN +++ +  + +      LF  M +KGVE D  +W +VI G + N   ++A + 
Sbjct: 299 --VVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEM 356

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            ++M + GF P   TISS LPAC+   ++R GKE+H       + GDL   +ALV MYAK
Sbjct: 357 LRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAK 416

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAV 456
           CG ++ +R +FD +  ++ V WN+MI   A HG   E + LF  M +   K + ++FT V
Sbjct: 417 CGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGV 476

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L+ C H  LVE G ++FN M   + + P   HYACMVD+  RAGRL EAYE I+ M  EP
Sbjct: 477 LSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEP 536

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
               WGALLGAC+ + N+ELA+I+A  L E+EP +  N + L ++   A
Sbjct: 537 TASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTA 585



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 143/323 (44%), Gaps = 55/323 (17%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI------- 144
           + L+SG+ +H   +  G+     + + L++ Y  C ++  AR++FD +P  ++       
Sbjct: 247 KDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVL 306

Query: 145 ----------------------------HRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
                                         W A+ G     G  ++AV +  +M   G K
Sbjct: 307 TAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFK 366

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            N   I S L AC  L  +  G+++H  V +H    D   +++L+ MY+KCG +  ++ V
Sbjct: 367 PNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNV 426

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FD +  KD+VA N M+      G   E L L E +    +KPN VT+  ++SG S S   
Sbjct: 427 FDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSR-- 484

Query: 297 VMVSKLFQLMRAKG----VEPDVVSWTSVI-----SGLVHNFCNDEAFDTFKEMLSQGFC 347
            +V +  Q+  + G    VEPD   +  ++     +G +H     EA++  + M  +   
Sbjct: 485 -LVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLH-----EAYEFIQRMPME--- 535

Query: 348 PTSATISSILPACASAANMRRGK 370
           PT++   ++L AC    N+   K
Sbjct: 536 PTASAWGALLGACRVYKNVELAK 558



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 122/275 (44%), Gaps = 21/275 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK +H  +    L       T L+  Y +C +++ +R +FD I + ++  W  +  
Sbjct: 384 SLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMII 443

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
           A A  G  +E + +F  M   G+K N      VL  C H   +  G +I +S+   H   
Sbjct: 444 ANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVE 503

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
            DA   + ++D++S+ G + +A +    M +E    A  A++     Y    LA  + N 
Sbjct: 504 PDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANK 563

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPDVVSWTSV----- 321
           + EI        V  +N L++  +K   +   +++  LM+ +G+ +    SW  V     
Sbjct: 564 LFEIEPNNPGNYVSLFNILVT--AKLWSEASEARI--LMKERGITKTPGCSWLQVGDRVH 619

Query: 322 --ISGLVHNFCNDEAFDTFKE----MLSQGFCPTS 350
             + G  +N  +D+ ++   E    M S G+ P +
Sbjct: 620 TFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDT 654


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/483 (34%), Positives = 261/483 (54%), Gaps = 65/483 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +++Q G+ +H+ +  + +     + +KL+  Y  C ++   R +FD++    +  W  L 
Sbjct: 115 KSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLM 174

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ G  +E++++F  M   G+++                                  
Sbjct: 175 NGYAKIGNFRESLSLFKRMRELGIRR---------------------------------- 200

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
                             VE A+K+FDE+ ++D+++ N+M+SGYV  GL+ + L+L E++
Sbjct: 201 ------------------VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM 242

Query: 272 GTPRVKPNVVTW--------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
               +  ++ T         N L+  +SKSG+     ++F+ M     E  VVSWTS+I+
Sbjct: 243 LLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMG----ERSVVSWTSMIA 298

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G      +D +   F EM  +   P S T++ ILPACAS A + RG+EIHG  +  G   
Sbjct: 299 GYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSL 358

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           D HV +ALVDMY KCG +  AR LFD + E++ V+W  MI G   HGY  EAI  FN+M 
Sbjct: 359 DRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMR 418

Query: 444 ERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
               + D +SF ++L AC H GL++ G   FNMM+    I P++EHYAC+VDLL RAG L
Sbjct: 419 NSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNL 478

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
           ++AY+ IK M  EPD  +WGALL  C+ + +++LAE  A+H+ ELEPE+    +LL ++Y
Sbjct: 479 SKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIY 538

Query: 563 ANA 565
           A A
Sbjct: 539 AEA 541



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 145/292 (49%), Gaps = 16/292 (5%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK----------LITFYTECQNI 129
           +++  I  Y+ +   + G  L  Q+++ G+   T +AT           L+  Y++  N+
Sbjct: 218 SWNSMISGYVSNGLSEKGLDLFEQMLLLGIN--TDLATMVSVELTLNNCLLDMYSKSGNL 275

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
           + A  +F+ + + ++  W ++   YAR G    +V +FHEM  + L  N   +  +L AC
Sbjct: 276 NSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPAC 335

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
             L+ +  G++IH  +L++ F  D  V ++L+DMY KCG++  A+ +FD + EKD+V+  
Sbjct: 336 ASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWT 395

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
            M++GY   G  +EA+    E+    ++P+ V++ +++   S SG        F +MR  
Sbjct: 396 VMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNN 455

Query: 310 -GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             +EP    +  ++  L       +A+   K M  +   P +    ++L  C
Sbjct: 456 CCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIE---PDATIWGALLCGC 504



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 112/261 (42%), Gaps = 37/261 (14%)

Query: 329 FCNDEAFDTFKEMLSQGFCPTSA--TISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
           FC         E+++Q   P     T  S+L  CA   +++ G+ IH       VE D  
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV 137

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-- 444
           + S LV MY  CG + E R +FDK++      WN ++ G A  G   E++ LF +M E  
Sbjct: 138 LGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELG 197

Query: 445 -------RKKLDHL------SFTAVLTACCHVGLVELGQRLFNMM-----QEKYKIMPRT 486
                  RK  D L      S+ ++++     GL E G  LF  M           M   
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 487 EHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           E     C++D+  ++G L  A ++ +TM  E  +  W +++      G   L++++ +  
Sbjct: 258 ELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYAREG---LSDMSVRLF 313

Query: 545 SELEPESAANNMLLTDLYANA 565
            E+E E         DL+ N+
Sbjct: 314 HEMEKE---------DLFPNS 325


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 281/494 (56%), Gaps = 24/494 (4%)

Query: 87  IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH----HARMLFDEIPKT 142
           ++ R R+L+  K +HA +++ G    +    +LI  +     +     HAR++FD IP  
Sbjct: 14  LWRRCRSLRQIKQVHALMVLQGFLSDSSALRELI--FASAVGVRGGTAHARLVFDRIPHP 71

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEM-------HIQGLKQNIFVIPSVLKACGHLSDI 195
           +   +  L    A     ++AV+++  M        +  L+ +    P VL+AC  +   
Sbjct: 72  DRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAG 131

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
            TG ++H+ V+K    +DAFV ++LI M++  G +  A  +FD    +D VA +AM+SG+
Sbjct: 132 ETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGF 191

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
            +RG    A  L +E  +P VK ++V+WN +I+ ++K GD     +LF        + DV
Sbjct: 192 ARRGDIGAARELFDE--SP-VK-DLVSWNVMITAYAKLGDMAPARELFD----GAPDRDV 243

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG- 374
           VSW ++ISG V      +A + F++M + G  P + T+ S+L ACA + ++  G+ +HG 
Sbjct: 244 VSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGF 303

Query: 375 -CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
                  +     + +AL+DMYAKCG ++ A  +F  M ++N  TWNS+I G A HG+  
Sbjct: 304 LSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHAT 363

Query: 434 EAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           E+I +F +M +   K D ++F AVL AC H G+V+ G   F++MQ++Y+I P  +HY CM
Sbjct: 364 ESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCM 423

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           VD+L R G L EA+E I TM  EP+  +W  LLGAC+ HG IELAE A + L +   +++
Sbjct: 424 VDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDAS 483

Query: 553 ANNMLLTDLYANAG 566
            + +LL+++YA+ G
Sbjct: 484 GDFVLLSNIYASVG 497


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/553 (30%), Positives = 284/553 (51%), Gaps = 62/553 (11%)

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM 134
            L    Y   +++    ++L  GK +H+ +  + +     +  KL++FY  C ++   R 
Sbjct: 96  ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH-------------------------- 168
           +FD + K N++ W  +   YA+ G  +E++ +F                           
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 169 -------------------------EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
                                    +M   G+  ++  I SVL  C +   +  G+ +HS
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
           L +K SF       ++L+DMYSKCG ++ A +VF++M E+++V+  +M++GY + G +  
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDG 335

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           A+ L++++    VK +VV   +++   ++SG       +   ++A  +  ++    +++ 
Sbjct: 336 AIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMD 395

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFC----------PTSATISSILPACASAANMRRGKEIH 373
                   + A   F  M+ +             P S T++ ILPACAS + + RGKEIH
Sbjct: 396 MYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIH 455

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
           G  +  G   D HV +ALVD+Y KCG +  AR LFD +  ++ V+W  MI G   HGY +
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 434 EAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           EAI  FN+M +   + D +SF ++L AC H GL+E G R F +M+  + I P+ EHYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           VDLL R G L++AY+ I+T+   PD  +WGALL  C+ + +IELAE  A+ + ELEPE+ 
Sbjct: 576 VDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENT 635

Query: 553 ANNMLLTDLYANA 565
              +LL ++YA A
Sbjct: 636 GYYVLLANIYAEA 648


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/508 (33%), Positives = 268/508 (52%), Gaps = 42/508 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++  GL     + T L++ Y++C  +  A  +F  +    +  W A+  AYA 
Sbjct: 291 GRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAE 350

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             Y   A+ +F  M  + +  + F + +V+  C  L     G+ +H+ + K    + + +
Sbjct: 351 NDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI 410

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI--GTP 274
            S+L+ +YSKCG    A  VF  M EKD+VA  +++SG  + G   EAL +  ++     
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 470

Query: 275 RVKP-----------------------------------NVVTWNTLISGFSKSGDQVMV 299
            +KP                                   NV   ++LI  +SK G   M 
Sbjct: 471 SLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMA 530

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            K+F  M  +    ++V+W S+IS    N   + + D F  MLSQG  P S +I+S+L A
Sbjct: 531 LKVFTSMSTE----NMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVA 586

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            +S A++ +GK +HG  + +G+  D H+++AL+DMY KCGF   A  +F KM  ++ +TW
Sbjct: 587 ISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITW 646

Query: 420 NSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N MI+G  +HG C  A+ LF++M++  +  D ++F ++++AC H G VE G+ +F  M++
Sbjct: 647 NLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQ 706

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y I P  EHYA MVDLLGRAG L EAY  IK M  E D  +W  LL A + H N+EL  
Sbjct: 707 DYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGI 766

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           ++A+ L  +EPE  +  + L +LY  AG
Sbjct: 767 LSAEKLLRMEPERGSTYVQLINLYMEAG 794



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 136/499 (27%), Positives = 218/499 (43%), Gaps = 41/499 (8%)

Query: 74  FHLSPAAYSERIEIYIRDRA----LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           F + P A+S  I + +  +      + GK +H  ++ + L   + + T LI  Y +    
Sbjct: 162 FGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLS 221

Query: 130 HHARMLFDEI-PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
             A  +F EI  K+N+  W  +   +   G  + ++ ++       +K         L A
Sbjct: 222 IDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGA 281

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C    + G G +IH  V+K     D +V +SL+ MYSKCG V +A+ VF  +V+K +   
Sbjct: 282 CSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIW 341

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQV------ 297
           NAMV+ Y +      AL+L   +    V P+  T + +IS     G    G  V      
Sbjct: 342 NAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFK 401

Query: 298 --------MVSKLFQLMRAKGVEP------------DVVSWTSVISGLVHNFCNDEAFDT 337
                   + S L  L    G +P            D+V+W S+ISGL  N    EA   
Sbjct: 402 RPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKV 461

Query: 338 FKEML--SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           F +M        P S  ++S+  ACA    +R G ++HG  I  G+  ++ V S+L+D+Y
Sbjct: 462 FGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLY 521

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFT 454
           +KCG    A  +F  MS  N V WNSMI   + +   + +I+LFN M  +    D +S T
Sbjct: 522 SKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSIT 581

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           +VL A      +  G+ L      +  I   T     ++D+  + G    A  + K M  
Sbjct: 582 SVLVAISSTASLLKGKSLHGYTL-RLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQ- 639

Query: 515 EPDLFVWGALLGACKNHGN 533
              L  W  ++    +HG+
Sbjct: 640 HKSLITWNLMIYGYGSHGD 658



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 186/396 (46%), Gaps = 45/396 (11%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           ++F  PS+LKAC  L+++  G+ IH  V+   +  D F+ +SL++MY KCG ++ A +VF
Sbjct: 59  SVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVF 118

Query: 238 DEMVE-------KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           D   +       +D+   N+M+ GY +     E +     +    V+P+  + + ++S  
Sbjct: 119 DGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVM 178

Query: 291 SKSG---------------------DQVMVSKLFQLMRAKGVEPD-------------VV 316
            K G                     D  + + L  +    G+  D             VV
Sbjct: 179 CKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVV 238

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
            W  +I G   +   + + D +    +      S + +  L AC+ + N   G++IH   
Sbjct: 239 LWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDV 298

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           + MG+  D +V ++L+ MY+KCG + EA T+F  + ++    WN+M+   A + Y   A+
Sbjct: 299 VKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSAL 358

Query: 437 ELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
           +LF  M ++  L D  + + V++ C  +GL   G+ +   + ++  I   +   + ++ L
Sbjct: 359 DLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKR-PIQSTSTIESALLTL 417

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKN 530
             + G   +AY + K+M  E D+  WG+L+ G CKN
Sbjct: 418 YSKCGCDPDAYLVFKSME-EKDMVAWGSLISGLCKN 452



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 121/486 (24%), Positives = 221/486 (45%), Gaps = 49/486 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-------NIHR 146
           L  GK +H  ++V G      IAT L+  Y +C  + +A  +FD   ++       ++  
Sbjct: 76  LSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTV 135

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF---VIPSVLKACGHLSDIGTGEKIHS 203
           W ++   Y +    +E V  F  M + G++ + F   ++ SV+   G+      G++IH 
Sbjct: 136 WNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRR-EEGKQIHG 194

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLAT 262
            +L++S  TD+F+ ++LIDMY K G    A +VF E+ +K ++V  N M+ G+   G+  
Sbjct: 195 FMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICE 254

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKS-----GDQV-------------------- 297
            +L+L        VK    ++   +   S+S     G Q+                    
Sbjct: 255 SSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLL 314

Query: 298 -MVSKLFQLMRAKGVEPDVVS-----WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
            M SK   +  A+ V   VV      W ++++    N     A D F  M  +   P S 
Sbjct: 315 SMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSF 374

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T+S+++  C+       GK +H       ++    + SAL+ +Y+KCG   +A  +F  M
Sbjct: 375 TLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSM 434

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK---KLDHLSFTAVLTACCHVGLVEL 468
            E++ V W S+I G   +G   EA+++F  M++     K D    T+V  AC  +  +  
Sbjct: 435 EEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRF 494

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G ++   M  K  ++      + ++DL  + G    A ++  +MSTE ++  W +++ +C
Sbjct: 495 GLQVHGSMI-KTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTE-NMVAWNSMI-SC 551

Query: 529 KNHGNI 534
            +  N+
Sbjct: 552 YSRNNL 557



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 157/329 (47%), Gaps = 15/329 (4%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
            AL+ G  +H  +I +GL     + + LI  Y++C     A  +F  +   N+  W ++ 
Sbjct: 490 EALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMI 549

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y+R    + ++ +F+ M  QG+  +   I SVL A    + +  G+ +H   L+    
Sbjct: 550 SCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIP 609

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  + ++LIDMY KCG  + A+ +F +M  K ++  N M+ GY   G    AL+L +E+
Sbjct: 610 SDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEM 669

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
                 P+ VT+ +LIS  + SG       +F+ M+   G+EP++  + +++  L     
Sbjct: 670 KKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGL 729

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE--IHGCAIVMGVE---GDL 385
            +EA+   K M      P  A  SSI     SA+      E  I     ++ +E   G  
Sbjct: 730 LEEAYSFIKAM------PIEAD-SSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGST 782

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSER 414
           +V+  L+++Y + G  +EA  L   M E+
Sbjct: 783 YVQ--LINLYMEAGLKNEAAKLLGLMKEK 809



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           S  F  +  T  S+L AC++  N+  GK IHG  +V+G   D  + ++LV+MY KCGF+ 
Sbjct: 53  SSPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLD 112

Query: 403 EARTLFDKMSE-------RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
            A  +FD  S+       R+   WNSMI G        E +  F +M     + D  S +
Sbjct: 113 YAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLS 172

Query: 455 AVLTACCHVGLV--ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
            V++  C  G    E G+++   M  +  +   +     ++D+  + G   +A+ +   +
Sbjct: 173 IVVSVMCKEGNFRREEGKQIHGFML-RNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEI 231

Query: 513 STEPDLFVWGALL 525
             + ++ +W  ++
Sbjct: 232 EDKSNVVLWNVMI 244


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 278/485 (57%), Gaps = 8/485 (1%)

Query: 86   EIYIRDRALQSGKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
            +I  ++  ++  K LH+++ +   L     +  KL+  Y  C      R +FDEIPK N+
Sbjct: 1032 QILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNV 1091

Query: 145  HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
              +  +  +Y     + +A+ VF  M   G+  + +  P VLKA     D+  G +IH+ 
Sbjct: 1092 VFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAA 1151

Query: 205  VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            V++     + FV + LI MY KCG + +A +V DZM  +D+V+ N++V+G  + G   +A
Sbjct: 1152 VVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDA 1211

Query: 265  LNLVEEIGTPRVKPNVVTWNTLISGFSKSG-DQV-MVSKLFQLMRAKGVEPDVVSWTSVI 322
            L + +E+    +KP+  T  +L+   + +  D V  V ++F  +  K +    VSW  +I
Sbjct: 1212 LEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSL----VSWNVMI 1267

Query: 323  SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
            +  ++N    EA D F +M      P + +I+S+LPAC   + +  G+ IH   +   ++
Sbjct: 1268 AVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQ 1327

Query: 383  GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
             +L + +AL+DMYAKCG +  AR +FD+M  R+ V+W SMI     +G   +A+ LF++M
Sbjct: 1328 PNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRM 1387

Query: 443  EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
            ++     D ++F +VL+AC H GL++ G+  F +M E+ KI+PR EH+ CMVDLLGRAG+
Sbjct: 1388 QDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQ 1447

Query: 502  LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
            + EAY  IK M  EP+  VWGALL AC+ + N+ +  +AA  L +L PE +   +LL+++
Sbjct: 1448 VDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNI 1507

Query: 562  YANAG 566
            YA AG
Sbjct: 1508 YAKAG 1512



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            AL  G+ +H  ++   L     +   LI  Y +C  + +AR +FD++   ++  W ++  
Sbjct: 1310 ALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMIS 1369

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE---KIHSLVLKHS 209
            AY   G  ++AV++F  M   GL  +     SVL AC H   +  G    K+ +   K  
Sbjct: 1370 AYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIV 1429

Query: 210  FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLV 268
               + FV   ++D+  + G V++A     +M +E +     A++S    R  +   + L+
Sbjct: 1430 PRIEHFVC--MVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSAC--RVYSNMIIGLL 1485

Query: 269  EEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVE--PDVVSWTSVISGL 325
                  ++ P    +  L+S  ++K+G    V+ +  +M+ KG++  P V ++   +   
Sbjct: 1486 AADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFE--LDNR 1543

Query: 326  VHNF 329
            VH F
Sbjct: 1544 VHTF 1547


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/484 (33%), Positives = 276/484 (57%), Gaps = 20/484 (4%)

Query: 94  LQSGKILHAQLIVSGLAR--------LTQIATKLITFYTECQNIHHARMLFDEIPKTNIH 145
           L++ K +HA +I++G           +  I+T L+         ++A  LF +IP+ +  
Sbjct: 15  LKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTF 74

Query: 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            +  +    ++      A++++ EMH   +K + +  P VLKAC  L  + TG  +H +V
Sbjct: 75  MYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMV 134

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           L+  FG++A V ++L+  ++KCG +  A  +FD+  + D+VA +++++GY +RG    A 
Sbjct: 135 LRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVAR 194

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L  E+     + ++V+WN +I+G+ K G+      LF     K    DVVSW ++I+G 
Sbjct: 195 KLFNEMP----ERDLVSWNVMITGYVKQGEMESARMLFDEAPVK----DVVSWNAMIAGY 246

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG--CAIVMGVEG 383
           V    + +A + F EM   G  P   T+ S+L ACA   ++  GK++H     I MG   
Sbjct: 247 VVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLS 306

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
            L + +AL+DMYAKCG I E+  +F  +++++ ++WNS+I G A HG+  E++ LF  M+
Sbjct: 307 TL-LGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQ 365

Query: 444 ERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
             K   + ++F  VL AC H G ++ G + F++M  +YKI P   H  CMVD+LGRAG L
Sbjct: 366 RTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLL 425

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            EA + I +M  EP+  +W  LL ACK HG++ELA++A + L  +  + + + +L+++LY
Sbjct: 426 KEAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLY 485

Query: 563 ANAG 566
           A+ G
Sbjct: 486 ASRG 489


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 275/512 (53%), Gaps = 47/512 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+ +HAQL   G+      AT L   Y +C+    AR +FD +P  +   W AL   
Sbjct: 75  LATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAG 134

Query: 154 YARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YAR G  + A+ +   M  + G + +   + SVL AC +   +    + H+  ++     
Sbjct: 135 YARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEE 194

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL----V 268
              V ++++D Y KCG +  A+ VFD M  K+ V+ NAM+ GY Q G + EAL L    V
Sbjct: 195 LVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMV 254

Query: 269 EE----------------------------------IGTPRVKPNVVTWNTLISGFSKSG 294
           EE                                  IG   +  NV   N LI+ +SK  
Sbjct: 255 EEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG---LDSNVSVMNALITMYSKCK 311

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
              + S +F  +  +      VSW ++I G   N C+++A   F  M  +   P S T+ 
Sbjct: 312 RVDLASHVFDELDRR----TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLV 367

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++PA A  ++  + + IHG +I + ++ D++V +AL+DMYAKCG ++ AR LF+   ER
Sbjct: 368 SVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER 427

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           + +TWN+MI G  +HG+   A+ELF +M+    + +  +F +VL+AC H GLV+ G+  F
Sbjct: 428 HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYF 487

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M+E Y + P  EHY  MVDLLGRAG+L EA+  I+ M  +P L V+GA+LGACK H N
Sbjct: 488 TSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKN 547

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           +ELAE +A+ + EL P+    ++LL ++YANA
Sbjct: 548 VELAEESAQKIFELGPQEGVYHVLLANIYANA 579



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 188/424 (44%), Gaps = 57/424 (13%)

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A A R     A+  F  M   G    +    S+LK C    D+ TG  +H+ +      +
Sbjct: 33  ASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDS 92

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV---- 268
           +A   ++L +MY+KC     A++VFD M  +D VA NA+V+GY + GLA  A+ +V    
Sbjct: 93  EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 269 EEIGTPRVKPNVVTW-----------------------------------NTLISGFSKS 293
           EE G    +P+ +T                                      ++  + K 
Sbjct: 153 EEEGE---RPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKC 209

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD      +F  M  K    + VSW ++I G   N  + EA   F  M+ +G   T  ++
Sbjct: 210 GDIRAARVVFDWMPTK----NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSV 265

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            + L AC     +  G  +H   + +G++ ++ V +AL+ MY+KC  +  A  +FD++  
Sbjct: 266 LAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDR 325

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           R  V+WN+MI GCA +G  ++A+ LF +M+ E  K D  +  +V+ A     L ++   L
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA-----LADISDPL 380

Query: 473 FNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
                  Y I    +        ++D+  + GR+  A  +  + + E  +  W A++   
Sbjct: 381 QARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGY 439

Query: 529 KNHG 532
            +HG
Sbjct: 440 GSHG 443


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 281/494 (56%), Gaps = 24/494 (4%)

Query: 87  IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH----HARMLFDEIPKT 142
           ++ R R+L+  K +HA +++ G    +    +LI  +     +     HAR++FD IP  
Sbjct: 14  LWRRCRSLRQIKQVHALMVLQGFLSDSSALRELI--FASAVGVRGGTAHARLVFDRIPHP 71

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEM-------HIQGLKQNIFVIPSVLKACGHLSDI 195
           +   +  L    A     ++AV+++  M        +  L+ +    P VL+AC  +   
Sbjct: 72  DRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAG 131

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
            TG ++H+ V+K    +DAFV ++LI M++  G +  A  +FD    +D VA +AM+SG+
Sbjct: 132 ETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGF 191

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
            +RG    A  L +E  +P VK ++V+WN +I+ ++K GD     +LF        + DV
Sbjct: 192 ARRGDIGAARELFDE--SP-VK-DLVSWNVMITAYAKLGDMAPARELFD----GAPDRDV 243

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG- 374
           VSW ++ISG V      +A + F++M + G  P + T+ S+L ACA + ++  G+ +HG 
Sbjct: 244 VSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGF 303

Query: 375 -CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
                  +     + +AL+DMYAKCG ++ A  +F  M ++N  TWNS+I G A HG+  
Sbjct: 304 LSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHAT 363

Query: 434 EAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           E+I +F +M +   K D ++F AVL AC H G+V+ G   F++MQ++Y+I P  +HY CM
Sbjct: 364 ESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCM 423

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           VD+L R G L EA+E I TM  EP+  +W  LLGAC+ HG IELAE A + L +   +++
Sbjct: 424 VDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDAS 483

Query: 553 ANNMLLTDLYANAG 566
            + +LL+++YA+ G
Sbjct: 484 GDFVLLSNIYASVG 497


>gi|302142563|emb|CBI19766.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 160/401 (39%), Positives = 246/401 (61%), Gaps = 6/401 (1%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M + G++ N   + S + AC  L  +  G ++HS+ +K     D  V +SLIDMYSK G 
Sbjct: 1   MLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGE 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
           +E A++VFD +++KD+   N+M+ GY Q G   +A +L  ++    V PNVVTWN +ISG
Sbjct: 61  LEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISG 120

Query: 290 FSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC- 347
           + ++GD+     LF  M   G ++ D  SW S+I+G + N   ++A   F++M  Q FC 
Sbjct: 121 YIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQM--QSFCI 178

Query: 348 -PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P S T+ SILPACA+    ++ KEIHGC +   +  +L V + L+D YAK G I  A+T
Sbjct: 179 RPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQT 238

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +F  +S ++ ++WNS+I G   HG  D A++LF+QM +   K    +F +++ A    G+
Sbjct: 239 IFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGM 298

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           V+ G+++F+ M E Y+I+P  EH++ M+DLLGR+G+L EA E I+ M+ EPD  +W ALL
Sbjct: 299 VDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALL 358

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            A K HGNI LA  A + L ELEP + + +  +  +YA +G
Sbjct: 359 TASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSG 399



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 171/387 (44%), Gaps = 79/387 (20%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL+ G  LH+  +  G      +   LI  Y++   +  AR +FD I K +++ W ++ 
Sbjct: 24  KALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMI 83

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G Y + GY  +A  +F +MH   +  N+    +++        I  G++  ++ L H   
Sbjct: 84  GGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGY-----IQNGDEDQAMDLFH--- 135

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
                             +EK     D ++++D  + N++++GY+Q G   +AL +  ++
Sbjct: 136 -----------------RMEK-----DGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQM 173

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
            +  ++PN VT                                    N LI  ++KSG+ 
Sbjct: 174 QSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNI 233

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           V    +FQ + +K    D++SW S+I+G V + C+D A D F +M   G  P+  T  SI
Sbjct: 234 VYAQTIFQGISSK----DIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSI 289

Query: 357 LPACASAANMRRGKEIHGC-----AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           + A + +  + +GK++         I+ G+E      SA++D+  + G + EA    + M
Sbjct: 290 IYAFSLSGMVDKGKQVFSSMMEDYQILPGLEH----HSAMIDLLGRSGKLGEAIEFIEDM 345

Query: 412 S-ERNTVTWNSMIFGCANHGYCDEAIE 437
           + E ++  W +++     HG    AI 
Sbjct: 346 AIEPDSCIWAALLTASKIHGNIGLAIR 372



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 143/284 (50%), Gaps = 13/284 (4%)

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           RM  D + K +   W +L   Y + G+  +A+ +F +M    ++ N   + S+L AC +L
Sbjct: 136 RMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANL 195

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
                 ++IH  +L+ + G++  V + LID Y+K G++  A+ +F  +  KDI++ N+++
Sbjct: 196 VAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLI 255

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ----LMRA 308
           +GYV  G +  AL+L +++    VKP+  T+ ++I  FS SG   MV K  Q    +M  
Sbjct: 256 AGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSG---MVDKGKQVFSSMMED 312

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
             + P +   +++I  L  +    EA +  ++M  +   P S   +++L A     N+  
Sbjct: 313 YQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIE---PDSCIWAALLTASKIHGNI-- 367

Query: 369 GKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKM 411
           G  I     ++ +E  +  +   ++ MYA  G   +A    D++
Sbjct: 368 GLAIRAGECLLELEPSNFSIHQQILQMYALSGKFEDAPDQHDRL 411


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/437 (38%), Positives = 267/437 (61%), Gaps = 10/437 (2%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ-NIFVIPSVLKACG 190
           AR LFD +P  N+  W A+   Y   G+ QE   +F +M  +GL + N   +  + KACG
Sbjct: 218 ARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACG 277

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
           +   +  G +IH LV +  F  D  + +S+I MYS  G  + A KVF  + +KDIV  N+
Sbjct: 278 NCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNS 337

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
           ++SGY+       A  +    G   VK +V++W  +I+GFSKSG      +LF ++ AK 
Sbjct: 338 LISGYIHNNEVEAAYRV---FGRMPVK-DVISWTAMIAGFSKSGRVENAIELFNMLPAK- 392

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
              D   WT++ISG V+N   +EA   +  M+ +G  P   TISS+L A A+   +  G 
Sbjct: 393 ---DDFVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGL 449

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           +IH C + M +E +L ++++L+  Y+K G + +A  +F  + E N +++NS+I G A +G
Sbjct: 450 QIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNG 509

Query: 431 YCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
           + DEA+ ++ +M+ E  + +H++F AVL+AC H GLV+ G  +FN M+  Y I P  +HY
Sbjct: 510 FGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHY 569

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
           ACMVD+LGRAG L EA ++I++M  +P   VWGA+LGA K H  ++LA++AA+ +++LEP
Sbjct: 570 ACMVDILGRAGLLDEAIDLIRSMPFKPHSGVWGAILGASKTHLRLDLAKLAAQRITDLEP 629

Query: 550 ESAANNMLLTDLYANAG 566
           ++A   ++L+++Y+ AG
Sbjct: 630 KNATPYVVLSNMYSAAG 646



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 177/356 (49%), Gaps = 23/356 (6%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           N+  A  +F ++P  N   W A+  A+A+ G  Q A  +F EM  +    N  +I + ++
Sbjct: 56  NVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMISAYIR 115

Query: 188 -ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--KD 244
             C    ++G   ++ S++ + +  + A ++   +    K G    A+K++ E     +D
Sbjct: 116 NGC----NVGKAYELFSVLAERNLVSYAAMIMGFV----KAGKFHMAEKLYRETPYEFRD 167

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
               NA+++GY++ G   EAL + E +G    + +VV+W+ ++ G  + G       LF 
Sbjct: 168 PACSNALINGYLKMGEVNEALRIFENMG----ERDVVSWSAMVDGLCRDGRVAAARDLFD 223

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL-PACASA 363
            M  +    +VVSW+++I G +      E F  F +M  +G    ++T  +I+  AC + 
Sbjct: 224 RMPDR----NVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNC 279

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
             M  G +IHG    +G E D  + ++++ MY+  G    A  +F  +S+++ VTWNS+I
Sbjct: 280 GRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLI 339

Query: 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
            G  ++   + A  +F +M  +   D +S+TA++      G VE    LFNM+  K
Sbjct: 340 SGYIHNNEVEAAYRVFGRMPVK---DVISWTAMIAGFSKSGRVENAIELFNMLPAK 392



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 4/244 (1%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T +I  +++   + +A  LF+ +P  +   W A+   +     ++EA+  +  M  +G K
Sbjct: 367 TAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGCK 426

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            N   I SVL A   L  +  G +IH+ +LK +   +  + +SLI  YSK G+V  A ++
Sbjct: 427 PNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRI 486

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F +++E ++++ N+++SG+ Q G   EAL + +++ +   +PN VT+  ++S  + +G  
Sbjct: 487 FLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLV 546

Query: 297 VMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                +F  M++  G+EP+   +  ++  L      DEA D  + M    F P S    +
Sbjct: 547 DEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAIDLIRSM---PFKPHSGVWGA 603

Query: 356 ILPA 359
           IL A
Sbjct: 604 ILGA 607


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 179/535 (33%), Positives = 280/535 (52%), Gaps = 32/535 (5%)

Query: 64  HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFY 123
           H+ + I      ++P  ++  +++ +          LHA +   G      + T LI  Y
Sbjct: 122 HFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAY 181

Query: 124 TECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIP 183
           +   N+  AR +FD+I   ++  W  +   YA   +++E++ +F++M I G K N F I 
Sbjct: 182 SVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTIS 241

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
             LK+C  L     G+ +H   LK  +  D FV  +L+++Y+K G +  A+++F+EM + 
Sbjct: 242 GALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKT 301

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS-----GDQ-- 296
           D++  + M++ Y Q   + EAL+L   +    V PN  T+ +++   + S     G Q  
Sbjct: 302 DLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIH 361

Query: 297 -----------VMVSKLFQLMRAKGVE-----------PDV--VSWTSVISGLVHNFCND 332
                      V VS     + AK  E           PD   V+W ++I G V     +
Sbjct: 362 SCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGE 421

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            A + F  ML     PT  T SS+L A AS A +  G +IH   I      D  V ++L+
Sbjct: 422 RAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLI 481

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           DMYAKCG I++AR  FDKM++R+ V+WN+MI G + HG   EA+ LF+ M+    K + L
Sbjct: 482 DMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKL 541

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  VL+AC + GL+  GQ  F  M + Y I P  EHY CMV LLGR GR  EA ++I  
Sbjct: 542 TFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGE 601

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++ +P + VW ALLGAC  H  ++L  + A+H+ E+EP   A ++LL+++YA AG
Sbjct: 602 IAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAG 656



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 239/498 (47%), Gaps = 51/498 (10%)

Query: 76  LSPAAYSERIEIYIRDRALQ-SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM 134
           L   +Y+  ++  IR+ A   +GK LH  ++  G +        L+ FY +  ++  A  
Sbjct: 32  LDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASK 91

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           LFDE+P+TN   ++ L   Y+R     +A+     +  +G + N FV  ++LK    +  
Sbjct: 92  LFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDL 151

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
                 +H+ V K     DAFV ++LID YS  G+V+ A+ VFD++  KD+V+   MV+ 
Sbjct: 152 AHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVAC 211

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWN------------------------------ 284
           Y +     E+L L  ++     KPN  T +                              
Sbjct: 212 YAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHD 271

Query: 285 -----TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                 L+  ++KSG+ +   +LF+ M     + D++ W+ +I+    +  + EA D F 
Sbjct: 272 LFVGIALLELYAKSGEIIDAQRLFEEMP----KTDLIPWSLMIARYAQSDRSKEALDLFL 327

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            M      P + T +S+L ACAS+ ++  GK+IH C +  G+  ++ V +A++D+YAKCG
Sbjct: 328 RMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCG 387

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLT 458
            I  +  LF+++ +RN VTWN++I G    G  + A+ LF  M E   +   +++++VL 
Sbjct: 388 EIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLR 447

Query: 459 ACCHVGLVELGQRLFNM----MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           A   +  +E G ++ ++    M  K  ++  +     ++D+  + GR+ +A      M+ 
Sbjct: 448 ASASLAALEPGLQIHSLTIKTMYNKDTVVANS-----LIDMYAKCGRINDARLTFDKMNK 502

Query: 515 EPDLFVWGALLGACKNHG 532
             D   W A++     HG
Sbjct: 503 R-DEVSWNAMICGYSMHG 519


>gi|347954456|gb|AEP33728.1| chlororespiratory reduction 21, partial [Brassica oleracea]
          Length = 643

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 268/476 (56%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  +V+GL     + T ++ FY +   I +A M+FD +   ++  W  L  
Sbjct: 100 GVEEGKXSHALAVVNGLELDNILGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLIS 159

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+ +   M ++ LK +   + +++       +   G+++    ++HSF +
Sbjct: 160 GYVQQGLVEDAIRMCQLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFES 219

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+KCGS+  AKKVFD  V+KD++  N +++ Y + GL+ EAL L  E+ 
Sbjct: 220 DIVLASAAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQ 279

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G      ++F  M++ G+ P +VSWT++++GLV N C++
Sbjct: 280 LESVPPNVITWNLIILSLLRNGQVDEAKEMFLQMQSSGIVPTIVSWTTMMNGLVXNGCSE 339

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSAL 391
           EA    ++M   G  P   +I+  L ACA+ A++  G+ +HG  I   +    + + ++L
Sbjct: 340 EAIHYLRKMQESGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSL 399

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG IS+A  +F +        +N+MI   A +G  +EA+ L+  +E+   K D+
Sbjct: 400 VDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYGSLEDMGIKPDN 459

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT +L+AC H G +     +F+ M  K+ + P  EHY  MVDLL  AG   +A  +++
Sbjct: 460 ITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKALRLME 519

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  EPD  +  +LL  C      EL E  +K L E EP+++ N + +++ YA  G
Sbjct: 520 EMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNYVTISNAYAGEG 575



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 193/408 (47%), Gaps = 38/408 (9%)

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
           G G  +H  V K       FV SSL DMY KCG ++ A+KVFDE+ E+++VA NA++ GY
Sbjct: 1   GFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGY 60

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG-------------------DQ 296
           VQ G+  EA+ L+ ++    V+P  VT +T +S  +  G                   D 
Sbjct: 61  VQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDN 120

Query: 297 VMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
           ++ + +             +++  + +  DVV+W  +ISG V     ++A    + M  +
Sbjct: 121 ILGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLE 180

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
                  T+S+++   A   N + GKE+    I    E D+ + SA VDMYAKCG I +A
Sbjct: 181 KLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDA 240

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHV 463
           + +FD   +++ + WN+++   A  G   EA+ LF +M+ E    + +++  ++ +    
Sbjct: 241 KKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRN 300

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS---TEPDLFV 520
           G V+  + +F  MQ    I+P    +  M++ L   G   EA   ++ M      P++F 
Sbjct: 301 GQVDEAKEMFLQMQSS-GIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVFS 359

Query: 521 WGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
               L AC N  ++        ++  + L   S +    L D+YA  G
Sbjct: 360 ITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCG 407



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 13/237 (5%)

Query: 93  ALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHA-----RMLFDEIPKTNIHR 146
           +L  G+ +H  +I + L +    I T L+  Y +C +I  A     R LF E+P  N   
Sbjct: 372 SLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYN--- 428

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LV 205
             A+  AYA  G  +EA+ ++  +   G+K +     ++L AC H  DI    +I S +V
Sbjct: 429 --AMISAYALYGNVEEAMALYGSLEDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMV 486

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            KH           ++D+ +  G  EKA ++ +EM  +    M   +     +   TE +
Sbjct: 487 SKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELV 546

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
             + +        N   + T+ + ++  G    V K+ ++M+AKG++     SW  V
Sbjct: 547 EYLSKQLLESEPDNSGNYVTISNAYAGEGSWDEVVKMREMMKAKGLKKQPGCSWIRV 603


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 264/477 (55%), Gaps = 13/477 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ--NIHHARMLFDEIPKTNIHRWIAL 150
           +LQ    LH  ++ SG  +   ++  L+  Y      N   A  +F  IP  N+  W  +
Sbjct: 45  SLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
                      +A+  +  M I   + N F  P++ KAC     +  G +IH  V+KH  
Sbjct: 105 IKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI 163

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           G+D  + S+ I MY+  G +E A+K+F    E D+V  N M+ GY++ G+   A  L  +
Sbjct: 164 GSDVHIKSAGIHMYASFGRLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKGLFAQ 222

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
           +       N+ +WN +I+G +K G+     KLF  M     E D +SW+S++ G +    
Sbjct: 223 MPVK----NIGSWNVMINGLAKGGNLGDARKLFDEMS----ERDEISWSSMVDGYISAGR 274

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA + F++M  +   P    +SS+L AC++   + +G+ +H       ++ D  + +A
Sbjct: 275 YKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTA 334

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLD 449
           L+DMYAKCG +     +F++M ER   TWN+MI G A HG  ++A+ELF++++E R K +
Sbjct: 335 LLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPN 394

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++   VLTAC H G V+ G R+F  M+E Y + P  EHY CMVDLLGR+G  +EA ++I
Sbjct: 395 GITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLI 454

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +M  +P+  VWGALLGAC+ HGN +LAE   K L ELEP+++   +LL+++YA  G
Sbjct: 455 NSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVG 511



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 15/245 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+ +HA L  + +     + T L+  Y +C  +     +F+E+ +  I  W A+ G
Sbjct: 309 AIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIG 368

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G  ++A+ +F ++    +K N   +  VL AC H   +  G +I    ++  +G 
Sbjct: 369 GLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ-TMREFYGV 427

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA-LNLVE 269
           D  +     ++D+  + G   +A+ + + M  K     NA V G +          +L E
Sbjct: 428 DPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKP----NAAVWGALLGACRIHGNFDLAE 483

Query: 270 EIGTP--RVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI--SG 324
            +G     ++P       L+S  ++K G    VSK+ +LM+ +G++   V   S++  +G
Sbjct: 484 RVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIK--TVPGVSIVDLNG 541

Query: 325 LVHNF 329
            VH F
Sbjct: 542 TVHEF 546


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/385 (38%), Positives = 234/385 (60%), Gaps = 9/385 (2%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F   S++KAC  +S++G GE +H  + K+ F +  FV ++L+D Y   G + +A++VFDE
Sbjct: 11  FTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDE 70

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M E+D+ A   M+S + + G  + A  L +E+       N  +WN +I G+S+  +    
Sbjct: 71  MSERDVFAWTTMISVHARTGDMSSARQLFDEMPVR----NTASWNAMIDGYSRLRNVESA 126

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             LF  M  +    D++SWT++I+    N    EA   F EM + G  P   T+++I+ A
Sbjct: 127 ELLFSQMPNR----DIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISA 182

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA    +  GKEIH  A+ MG + D+++ SAL+DMYAKCG + ++  +F K+ ++N   W
Sbjct: 183 CAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCW 242

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NS+I G A HGY +EA+ +F++M+  K K + ++F +VL AC H GLVE G++ F  M  
Sbjct: 243 NSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSR 302

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + I P  EHY CMVDLLG+AG L +A E++++M  EP+  +WGALLG CK H N+++A+
Sbjct: 303 DFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQ 362

Query: 539 IAAKHLSELEPESAANNMLLTDLYA 563
           +A      LEP ++    LL ++YA
Sbjct: 363 VAVNESKVLEPNNSGYYTLLVNMYA 387



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 165/335 (49%), Gaps = 9/335 (2%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           A++  I ++ R   + S + L  ++ V    R T     +I  Y+  +N+  A +LF ++
Sbjct: 78  AWTTMISVHARTGDMSSARQLFDEMPV----RNTASWNAMIDGYSRLRNVESAELLFSQM 133

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P  +I  W  +   Y++    +EA+ VF+EM   G+  +   + +++ AC HL  +  G+
Sbjct: 134 PNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGK 193

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH   ++  F  D ++ S+LIDMY+KCGS++K+  VF ++ +K++   N+++ G    G
Sbjct: 194 EIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHG 253

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSW 318
            A EAL +   +   ++KPN VT+ +++   + +G      K F  M R   + P++  +
Sbjct: 254 YAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHY 313

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
             ++  L      ++A +  + M  +   P S    ++L  C    N++  +     + V
Sbjct: 314 GCMVDLLGKAGLLEDALELVRSMRME---PNSVIWGALLGGCKLHRNLKIAQVAVNESKV 370

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +      +  + LV+MYA+    SE   +   M E
Sbjct: 371 LEPNNSGYY-TLLVNMYAEVNRWSEVANIRATMKE 404



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 74/367 (20%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  +   G      + T L+ FY     I  AR +FDE+ + ++  W  +   +AR
Sbjct: 29  GEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHAR 88

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G    A  +F EM ++                                           
Sbjct: 89  TGDMSSARQLFDEMPVRNTAS--------------------------------------- 109

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +++ID YS+  +VE A+ +F +M  +DI++   M++ Y Q     EAL +  E+ T  +
Sbjct: 110 WNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGI 169

Query: 277 KPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV------ 311
            P+ VT  T+IS  +  G                   D  + S L  +    G       
Sbjct: 170 DPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLV 229

Query: 312 ------EPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
                 + ++  W S+I GL VH +  +EA   F  M  +   P   T  S+L AC  A 
Sbjct: 230 VFFKLRKKNLFCWNSIIEGLAVHGYA-EEALAMFSRMQREKIKPNGVTFISVLGACTHAG 288

Query: 365 NMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSM 422
            +  G K     +    +  ++     +VD+  K G + +A  L   M  E N+V W ++
Sbjct: 289 LVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGAL 348

Query: 423 IFGCANH 429
           + GC  H
Sbjct: 349 LGGCKLH 355



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 16/232 (6%)

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M+     PTS T SS++ AC+  + +  G+ +HG     G +  + V++ALVD Y   G 
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460
           I EAR +FD+MSER+   W +MI   A  G    A +LF++M  R   +  S+ A++   
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVR---NTASWNAMIDGY 117

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST---EPD 517
             +  VE  + LF+ M  +  I+  T   AC      +  +  EA  +   M T   +PD
Sbjct: 118 SRLRNVESAELLFSQMPNR-DIISWTTMIAC----YSQNKQFREALAVFNEMQTNGIDPD 172

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML---LTDLYANAG 566
                 ++ AC + G ++L +    HL  +E     +  +   L D+YA  G
Sbjct: 173 EVTMATIISACAHLGALDLGK--EIHLYAMEMGFDLDVYIGSALIDMYAKCG 222


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 269/503 (53%), Gaps = 33/503 (6%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + G + H  L+  G      +   LI+FY +   I +A ++FD +P  +   W ++    
Sbjct: 427 RDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGC 486

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
              G + EA+ +F  M +QG + +   + SVL AC        G  +H   +K     + 
Sbjct: 487 TSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGET 546

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            + ++L+DMYS C       ++F  M +K++V+  AM++ Y + GL  +   L++E+   
Sbjct: 547 SLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLD 606

Query: 275 RVKPNVVTWNTLISGFS-----KSGDQVM-------VSKLFQLMRA--------KGVE-- 312
            +KP+V    +++ GF+     K G  V        + KL  +  A        + +E  
Sbjct: 607 GIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEA 666

Query: 313 ---------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                     D++SW ++I G   N   +E+F  F +ML Q F P + T++ ILPA AS 
Sbjct: 667 RLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASI 725

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           +++ RG+EIH  A+  G   D +  +ALVDMY KCG +  AR LFD+++++N ++W  MI
Sbjct: 726 SSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMI 785

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G   HG   +A+ LF QM     + D  SF+A+L ACCH GL   G + FN M+++YKI
Sbjct: 786 AGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKI 845

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P+ +HY C+VDLL   G L EA+E I++M  EPD  +W +LL  C+ H +++LAE  A 
Sbjct: 846 EPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVAD 905

Query: 543 HLSELEPESAANNMLLTDLYANA 565
            + +LEPE+    +LL ++YA A
Sbjct: 906 RVFKLEPENTGYYVLLANIYAEA 928



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 229/495 (46%), Gaps = 55/495 (11%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARL--TQIATKLITFYTECQNIHHARMLFD 137
           +Y   +++   +R+L++ +  HA L+ +G   +  + +  +L+  Y +C ++  ARM+FD
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHA-LVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFD 154

Query: 138 EIPK--TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           E+P    ++  W +L  AYA+ G  QE V++F +M   G+  +   +  VLK    L  I
Sbjct: 155 EMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSI 214

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             GE IH L+ K   G    V ++LI +YS+CG +E A +VFD M  +D ++ N+ +SGY
Sbjct: 215 TEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGY 274

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVT------------------------------WN- 284
              G    A++L  ++ +   + + VT                              W+ 
Sbjct: 275 FSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDL 334

Query: 285 -------------TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                         L+  + K GD     ++F  M +KG   +V  W  ++ G       
Sbjct: 335 ESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKG---NVHVWNLIMGGYAKAAEF 391

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +E+   F++M   G  P    +S +L      +  R G   HG  + +G      V +AL
Sbjct: 392 EESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNAL 451

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDH 450
           +  YAK   I  A  +FD+M  ++T++WNS+I GC ++G   EAIELF +M  +  +LD 
Sbjct: 452 ISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDS 511

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +  +VL AC       +G R+ +    K  ++  T     ++D+           ++ +
Sbjct: 512 TTLLSVLPACARSHYWFVG-RVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFR 570

Query: 511 TMSTEPDLFVWGALL 525
            M+ + ++  W A++
Sbjct: 571 NMA-QKNVVSWTAMI 584



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 180/411 (43%), Gaps = 50/411 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ++  G+++H  L   GL     +A  LI  Y+ C  +  A  +FD +   +   W +   
Sbjct: 213 SITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTIS 272

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF-- 210
            Y   G+H  AV +F +M  +G + +   + SVL AC  L     G+ +H   +K     
Sbjct: 273 GYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLW 332

Query: 211 -------GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLAT 262
                  G D  + S L+ MY KCG +  A++VFD M  K ++   N ++ GY +     
Sbjct: 333 DLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFE 392

Query: 263 EALNLVEEIGTPRVKPN-----------------------------------VVTWNTLI 287
           E+L L E++    + P+                                       N LI
Sbjct: 393 ESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALI 452

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           S ++KS        +F  M  +    D +SW SVISG   N  N EA + F  M  QG  
Sbjct: 453 SFYAKSNMIDNAVLVFDRMPHQ----DTISWNSVISGCTSNGLNSEAIELFVRMWMQGHE 508

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             S T+ S+LPACA +     G+ +HG ++  G+ G+  + +AL+DMY+ C        +
Sbjct: 509 LDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQI 568

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           F  M+++N V+W +MI      G  D+   L  +M  +  K D  + T+VL
Sbjct: 569 FRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 145/271 (53%), Gaps = 5/271 (1%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D +L+ GK +H   I +G+ +L  +A  L+  Y  C+N+  AR++FD +   +I  W  L
Sbjct: 625 DESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTL 684

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
            G Y+R  +  E+ ++F +M +Q  K N   +  +L A   +S +  G +IH+  L+  F
Sbjct: 685 IGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGF 743

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D++  ++L+DMY KCG++  A+ +FD + +K++++   M++GY   G   +A+ L E+
Sbjct: 744 LEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQ 803

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNF 329
           +    V+P+  +++ ++     SG      K F  MR +  +EP +  +T ++  L H  
Sbjct: 804 MRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTG 863

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
              EAF+  + M  +   P S+   S+L  C
Sbjct: 864 NLKEAFEFIESMPIE---PDSSIWVSLLHGC 891



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 165/388 (42%), Gaps = 82/388 (21%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS-LIDMYSKCGSVEKAKKVFDEMVE 242
           +V++ CG    +    + H+LV   + G    V+   L+  Y KCG +  A+ VFDEM  
Sbjct: 99  AVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEM-- 156

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
                                          PRV  +V  W +L+S ++K+GD       
Sbjct: 157 ------------------------------PPRV-ADVRVWTSLMSAYAKAGD------- 178

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           FQ                            E    F++M   G  P +  +S +L   AS
Sbjct: 179 FQ----------------------------EGVSLFRQMQCCGVSPDAHAVSCVLKCIAS 210

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             ++  G+ IHG    +G+     V +AL+ +Y++CG + +A  +FD M  R+ ++WNS 
Sbjct: 211 LGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNST 270

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G  ++G+ D A++LF++M  E  ++  ++  +VL AC  +G  EL  ++ +    K  
Sbjct: 271 ISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGF-ELVGKVVHGYSMKSG 329

Query: 482 IMPRTEHYACMVD-LLG--------RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           ++   E     +D  LG        + G +  A  +   M ++ ++ VW  ++G      
Sbjct: 330 LLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAA 389

Query: 533 NIELAEIAAKHLSEL--EPESAANNMLL 558
             E + +  + + EL   P+  A + LL
Sbjct: 390 EFEESLLLFEQMHELGITPDEHALSCLL 417


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 173/504 (34%), Positives = 276/504 (54%), Gaps = 35/504 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTE--CQNIHHARMLFDEIPKTNIHRWIAL 150
           A Q  + LHA  + + +     ++++L+  Y++    ++ +AR +FD I + ++  W  +
Sbjct: 25  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              Y    +  + + +FHE+  + L  N F +P V+K C  L  +  G++IH L LK  F
Sbjct: 85  IKCYVENQFSHDGIVLFHELVHEYLPDN-FTLPCVIKGCARLGVVQEGKQIHGLALKIGF 143

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           G+D FV  SL++MYSKCG ++ A+KVFD M++KD+V  N+++ GY + G    AL L EE
Sbjct: 144 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEE 203

Query: 271 I-------------GTPRVKP--------------NVVTWNTLISGFSKSGDQVMVSKLF 303
           +             G  +                 N+V+WN +I+G+ KSGD     +LF
Sbjct: 204 MPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF 263

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             M       D+V+W  +I+G   N    +A   F  ML  G  P+ AT+ S+L A +  
Sbjct: 264 YQMPIW----DLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGL 319

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A + +G+ IH      G E D  + ++L++MYAKCG I  A T+F  + ++    W ++I
Sbjct: 320 AVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAII 379

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G   HG  + A+ LF +M +   K + + F  VL AC H GLV+ G++ F+MM  +YKI
Sbjct: 380 VGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 439

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P  EHY C+VD+L RAG L EA   I+ M   P+  +W +LLG  +NHG I++ E AA+
Sbjct: 440 EPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQ 499

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            + E+ PE+    +LL+++YA +G
Sbjct: 500 RVIEVAPETIGCYILLSNMYAASG 523


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 275/512 (53%), Gaps = 47/512 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+ +HAQL   G+      AT L   Y +C+    AR +FD +P  +   W AL   
Sbjct: 75  LATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAG 134

Query: 154 YARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YAR G  + A+ +   M  + G + +   + SVL AC +   +    + H+  ++     
Sbjct: 135 YARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEE 194

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL----V 268
              V ++++D Y KCG +  A+ VFD M  K+ V+ NAM+ GY Q G + EAL L    V
Sbjct: 195 LVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMV 254

Query: 269 EE----------------------------------IGTPRVKPNVVTWNTLISGFSKSG 294
           EE                                  IG   +  NV   N LI+ +SK  
Sbjct: 255 EEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG---LDSNVSVMNALITMYSKCK 311

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
              + S +F  +  +      VSW ++I G   N C+++A   F  M  +   P S T+ 
Sbjct: 312 RVDLASHVFDELDRR----TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLV 367

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++PA A  ++  + + IHG +I + ++ D++V +AL+DMYAKCG ++ AR LF+   ER
Sbjct: 368 SVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER 427

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           + +TWN+MI G  +HG+   A+ELF +M+    + +  +F +VL+AC H GLV+ G+  F
Sbjct: 428 HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYF 487

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M+E Y + P  EHY  MVDLLGRAG+L EA+  I+ M  +P L V+GA+LGACK H N
Sbjct: 488 TSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKN 547

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           +ELAE +A+ + EL P+    ++LL ++YANA
Sbjct: 548 VELAEESAQKIFELGPQEGVYHVLLANIYANA 579



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 185/414 (44%), Gaps = 57/414 (13%)

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
           A+  F  M   G    +    S+LK C    D+ TG  +H+ +      ++A   ++L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV----EEIGTPRVKP 278
           MY+KC     A++VFD M  +D VA NA+V+GY + GLA  A+ +V    EE G    +P
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE---RP 159

Query: 279 NVVTW-----------------------------------NTLISGFSKSGDQVMVSKLF 303
           + +T                                      ++  + K GD      +F
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             M  K    + VSW ++I G   N  + EA   F  M+ +G   T  ++ + L AC   
Sbjct: 220 DWMPTK----NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
             +  G  +H   + +G++ ++ V +AL+ MY+KC  +  A  +FD++  R  V+WN+MI
Sbjct: 276 GCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI 335

Query: 424 FGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            GCA +G  ++A+ LF +M+ E  K D  +  +V+ A     L ++   L       Y I
Sbjct: 336 LGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA-----LADISDPLQARWIHGYSI 390

Query: 483 MPRTEH----YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
               +        ++D+  + GR+  A  +  + + E  +  W A++    +HG
Sbjct: 391 RLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGYGSHG 443


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 280/510 (54%), Gaps = 38/510 (7%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D A++ G  +H  +I SGL     +   ++  Y++   +  A+ +FD +   N   W ++
Sbjct: 206 DGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSM 265

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +   G   EA  +F+ M ++G+K    +  +V+K C ++ ++   +++H  V+K+  
Sbjct: 266 IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGS 325

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVE 269
             D  + ++L+  YSKC  ++ A K+F  M   +++V+  A++SGYVQ G    A+NL  
Sbjct: 326 DFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFC 385

Query: 270 EIGTPRVKPNVVTWNTLISG-------------------------------FSKSGDQVM 298
           ++    V+PN  T++T+++                                +SK GD   
Sbjct: 386 QMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANE 445

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            +K+F+L+     E D+V+W++++SG       + A   F ++  +G  P   T SS+L 
Sbjct: 446 AAKIFELID----EKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLN 501

Query: 359 ACAS-AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           ACA+  A++ +GK+ H C+I  G    L V SALV MYAK G I  A  +F +  +R+ V
Sbjct: 502 ACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLV 561

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WNSMI G A HG   +++++F +M  +  +LD ++F  V++AC H GLV  GQR F++M
Sbjct: 562 SWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLM 621

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            + Y I+P  EHY+CMVDL  RAG L +A ++I  M       +W  LL AC+ H N++L
Sbjct: 622 VKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQL 681

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            E+AA+ L  L+P+ +A  +LL+++YA AG
Sbjct: 682 GELAAEKLISLQPQDSAAYVLLSNIYATAG 711



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 225/473 (47%), Gaps = 46/473 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H Q I  G      + T L+  Y + +++     +FDE+   N+  W +L   Y +
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G +++A+ +F +M ++G+K N F   +VL        +  G ++H++V+K    +  FV
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S+++MYSK   V  AK VFD M  ++ V+ N+M++G+V  GL  EA  L   +    V
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 277 KPNVVTWNTLIS-----------------------------------GFSKSGDQVMVSK 301
           K     + T+I                                     +SK  +     K
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF +M   GV+ +VVSWT++ISG V N   D A + F +M  +G  P   T S+IL A A
Sbjct: 351 LFCMMH--GVQ-NVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA 407

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + +      +IH   +    E    V +AL D Y+K G  +EA  +F+ + E++ V W++
Sbjct: 408 AVS----PSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSA 463

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCH-VGLVELGQRLFNMMQEK 479
           M+ G A  G  + A+++F Q+ +E  + +  +F++VL AC      VE G++ F+    K
Sbjct: 464 MLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ-FHSCSIK 522

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                     + +V +  + G +  A E+ K    + DL  W +++     HG
Sbjct: 523 SGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMISGYAQHG 574



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 220/445 (49%), Gaps = 49/445 (11%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           H++ LFDE P+  + R   L   ++R   ++EA+ +F  +   G   +   +  VLK CG
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            L D   G+++H   +K  F  D  V +SL+DMY K  SVE  ++VFDEM  K++V+  +
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV-------- 297
           +++GY Q GL  +AL L  ++    +KPN  T+  ++ G +     + G QV        
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 298 -------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                        M SK   +  AK V       + VSW S+I+G V N  + EAF+ F 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            M  +G   T    ++++  CA+   M   K++H   I  G + DL++++AL+  Y+KC 
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCS 343

Query: 400 FISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVL 457
            I +A  LF  M   +N V+W ++I G   +G  D A+ LF QM  E  + +H +++ +L
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTIL 403

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTM 512
           TA   V   ++   +   ++  Y+  P      ++ Y+     +G A   A+ +E+I   
Sbjct: 404 TANAAVSPSQIHALV---VKTNYENSPSVGTALSDSYS----KIGDANEAAKIFELID-- 454

Query: 513 STEPDLFVWGALLGACKNHGNIELA 537
             E D+  W A+L      G+IE A
Sbjct: 455 --EKDIVAWSAMLSGYAQMGDIEGA 477



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 191/421 (45%), Gaps = 60/421 (14%)

Query: 55  LINGIFIEAH---YKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLAR 111
           + NG+ +EA    Y+M +      L+   ++  I++    + +   K LH Q+I +G   
Sbjct: 270 VTNGLDLEAFELFYRMRL--EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327

Query: 112 LTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEM 170
              I T L+  Y++C  I  A  LF  +    N+  W A+   Y + G    A+ +F +M
Sbjct: 328 DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM 387

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
             +G++ N F   ++L A   +S      +IH+LV+K ++     V ++L D YSK G  
Sbjct: 388 RREGVRPNHFTYSTILTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDA 443

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI--- 287
            +A K+F+ + EKDIVA +AM+SGY Q G    A+ +  ++    V+PN  T+++++   
Sbjct: 444 NEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNAC 503

Query: 288 -------------------SGFSKSGDQVMVSKLFQLMRAK-------------GVEPDV 315
                              SGFS +   + VS     M AK              V+ D+
Sbjct: 504 AAPTASVEQGKQFHSCSIKSGFSNA---LCVSSALVTMYAKRGNIESANEVFKRQVDRDL 560

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           VSW S+ISG   + C  ++   F+EM S+       T   ++ AC  A  +  G+     
Sbjct: 561 VSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDL 620

Query: 376 AIVMGVEGDLHV------RSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCAN 428
            +      D H+       S +VD+Y++ G + +A  L +KM        W +++  C  
Sbjct: 621 MV-----KDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRV 675

Query: 429 H 429
           H
Sbjct: 676 H 676


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 185/550 (33%), Positives = 281/550 (51%), Gaps = 46/550 (8%)

Query: 19  LSMNDFYSIRRIYFALLSGTQLVLS--CSKSASDAGK-PLINGIFIEAHYKMPIISRSFH 75
           L   DF+S   +++  L    L  +    +  S AG   ++  +F E H K  +      
Sbjct: 467 LGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSE-- 524

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
                YS  ++   R   +  G  +H  LI  G      +   L+ FY  C  +  A  +
Sbjct: 525 ----VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 580

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GHLSD 194
           F E+P      W        +    Q+ V +F +M    LK     I  VL+A    L  
Sbjct: 581 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGF 640

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G++ H  VL++ F  D +V +SLIDMY K  S+  A+ VFD M  ++I A       
Sbjct: 641 LNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFA------- 693

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
                                       WN+L+SG+S  G      +L   M  +G++PD
Sbjct: 694 ----------------------------WNSLVSGYSFKGMFEDALRLLNQMEKEGIKPD 725

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           +V+W  +ISG     C  EA   F +M  +G  P SA+I+ +L ACAS + +++GKEIH 
Sbjct: 726 LVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHC 785

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
            +I  G   D+ V +AL+DMY+K   +  A  +F ++  +   +WN MI G A  G   E
Sbjct: 786 LSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKE 845

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           AI +FN+M++     D ++FTA+L+AC + GL+  G + F+ M   Y+I+PR EHY CMV
Sbjct: 846 AISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMV 905

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           DLLGRAG L EA+++I TM  +PD  +WGALLG+C+ H N++ AE AAK+L +LEP ++A
Sbjct: 906 DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSA 965

Query: 554 NNMLLTDLYA 563
           N +L+ +LY+
Sbjct: 966 NYILMMNLYS 975



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 124/298 (41%), Gaps = 46/298 (15%)

Query: 283 WN------TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI------SGLVHNFC 330
           WN       LIS +   GD    + +F +    G+  + + W S +      +G +H   
Sbjct: 453 WNPDAAAKNLISSYLGFGDFWSAAMVFYV----GLPRNYLKWNSFVEEFKSSAGSLHI-- 506

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
                + FKE+  +G    S   S  L  C    ++  G EIHGC I  G + D+++R A
Sbjct: 507 ---VLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCA 563

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450
           L++ Y +C  + +A  +F +M     + WN  I          + +ELF +M+       
Sbjct: 564 LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQ------- 616

Query: 451 LSF----TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC-------MVDLLGRA 499
            SF    TA +       + ELG    NM +E +  + R   + C       ++D+  + 
Sbjct: 617 FSFLKAETATIVRVLQASISELG--FLNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKN 673

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
             L  A  +   M    ++F W +L+      G   + E A + L+++E E    +++
Sbjct: 674 HSLTSAQAVFDNMKNR-NIFAWNSLVSGYSFKG---MFEDALRLLNQMEKEGIKPDLV 727


>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
          Length = 830

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 271/473 (57%), Gaps = 4/473 (0%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK  HA  I++GL     + T L+ FY +   I +A M+FD +   ++  W  L   Y +
Sbjct: 293 GKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQ 352

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           +G  ++A+ +   M ++ LK +   + +++ A     ++  G+++    ++HS  +D  +
Sbjct: 353 QGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVL 412

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S  +DMY+KCGS+  AKKVFD  VEKD++  N +++ Y + GL+ EAL L  E+    V
Sbjct: 413 ASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLESV 472

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
            PNV+TWN +I    ++G+     ++F  M++ G+ P+++SWT++++G+V N C++EA  
Sbjct: 473 PPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAIL 532

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE--GDLHVRSALVDM 394
             ++M   G  P + +I+  L A A+ A++  G+ IHG  IV  ++    + + ++LVDM
Sbjct: 533 FLRKMQDSGLRPNAFSITVALSASANLASLHFGRSIHG-YIVRNLQHSSSVSIETSLVDM 591

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSF 453
           YAKCG I++A  +F          +N+MI   A +G   EAI L+  +E+   K D+++F
Sbjct: 592 YAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAITLYRSLEDMGNKPDNITF 651

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
           T++L+AC HVG +     +F  M  K+ + P  EHY  MVDLL  AG    A ++I+ M 
Sbjct: 652 TSLLSACNHVGDINQAIEIFTDMVSKHGVKPCLEHYGLMVDLLASAGETDRALKLIEEMP 711

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +PD  +  +L+ +C      EL E  ++HL E EPE++ N + +++ YA  G
Sbjct: 712 YKPDARMIQSLVASCNKQHKSELVEYFSRHLLESEPENSGNYVTISNAYAVEG 764



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 260/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +GK +HA+++ +G   A    I TKL+ FY +C  +
Sbjct: 64  RNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKCDAL 123

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A++LF ++   N+  W A+ G   R G  + A+  F EM    +  + FV+P+V KAC
Sbjct: 124 EIAQVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKAC 183

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V+K       FV SSL DMY KCG ++ A+KVFDE+ E+++VA N
Sbjct: 184 GALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWN 243

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L+ ++    V+P+ VT +T +S  +  G               
Sbjct: 244 ALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAIAILN 303

Query: 295 ----DQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + L       G+            + DVV+W  +ISG V     ++A    
Sbjct: 304 GLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMC 363

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++ A A   N++ GKE+    I   +E D+ + S  +DMYAKC
Sbjct: 364 QLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKC 423

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD   E++ + WN+++   A  G   EA+ LF +M+ E    + +++  ++
Sbjct: 424 GSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLII 483

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V   + +F  MQ    I P    +  M++ + + G   EA   ++ M     
Sbjct: 484 LSLLRNGEVNEAKEMFLQMQSS-GISPNLISWTTMMNGMVQNGCSEEAILFLRKMQDSGL 542

Query: 515 EPDLFVWGALLGACKNHGNIELAE-IAAKHLSELEPESAAN-NMLLTDLYANAG 566
            P+ F     L A  N  ++     I    +  L+  S+ +    L D+YA  G
Sbjct: 543 RPNAFSITVALSASANLASLHFGRSIHGYIVRNLQHSSSVSIETSLVDMYAKCG 596



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 125/524 (23%), Positives = 235/524 (44%), Gaps = 71/524 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++ +GL     +A+ L   Y +C  +  AR +FDEIP+ N+  W AL   Y +
Sbjct: 192 GRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALLVGYVQ 251

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  +M   G++ +   + + L A  ++  +  G++ H++ + +    D  +
Sbjct: 252 NGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNIL 311

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SL++ Y K G +E A+ +FD M +KD+V  N ++SGYVQ+GL  +A+ + + +    +
Sbjct: 312 GTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLENL 371

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           K + VT +TL+S  +++     G +V                     M +K   ++ AK 
Sbjct: 372 KYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKK 431

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                VE D++ W ++++    +  + EA   F EM  +   P   T + I+ +      
Sbjct: 432 VFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGE 491

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN---------- 415
           +   KE+       G+  +L   + +++   + G   EA     KM +            
Sbjct: 492 VNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITV 551

Query: 416 ----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV----GLVE 467
               +    S+ FG + HGY              + L H S  ++ T+   +    G + 
Sbjct: 552 ALSASANLASLHFGRSIHGYI------------VRNLQHSSSVSIETSLVDMYAKCGDIN 599

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGAL 524
             +R+F    + Y  +P    Y  M+      G + EA   Y  ++ M  +PD   + +L
Sbjct: 600 KAERVFG--SKLYSELPL---YNAMISAYALYGNVKEAITLYRSLEDMGNKPDNITFTSL 654

Query: 525 LGACKNHGNIELA-EIAAKHLSELEPESAANNM-LLTDLYANAG 566
           L AC + G+I  A EI    +S+   +    +  L+ DL A+AG
Sbjct: 655 LSACNHVGDINQAIEIFTDMVSKHGVKPCLEHYGLMVDLLASAG 698



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 227/476 (47%), Gaps = 51/476 (10%)

Query: 124 TECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIP 183
           T+  + HH     +    +  HR  +L     + G  +EA+++  +M  + L+    +  
Sbjct: 19  TKPSSKHHDDQALNPSSTSYFHRVSSL----CKNGEIKEALSLVTKMDFRNLRIGPEIYG 74

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
            +L+ C +  D+ TG++IH+ +LK+   +  + ++ + L+  Y+KC ++E A+ +F ++ 
Sbjct: 75  EILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKLR 134

Query: 242 EKDIVAMNAMVSGYVQRGLATEAL----NLVEEIGTPR--VKPNV------VTWNTLISG 289
            +++ +  A++    + GL   AL     ++E    P   V PNV      + W+    G
Sbjct: 135 VRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRG 194

Query: 290 FS----KSG--DQVMVSKLFQLMRAK-GV------------EPDVVSWTSVISGLVHNFC 330
                 K+G  D V V+     M  K GV            E +VV+W +++ G V N  
Sbjct: 195 VHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALLVGYVQNGM 254

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           N+EA     +M   G  P+  T+S+ L A A+   +  GK+ H  AI+ G+E D  + ++
Sbjct: 255 NEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNILGTS 314

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLD 449
           L++ Y K G I  A  +FD+M +++ VTWN +I G    G  ++AI +   M  E  K D
Sbjct: 315 LLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLENLKYD 374

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEA 505
            ++ + +++A      ++ G+ +     + Y I    E      +  +D+  + G + +A
Sbjct: 375 CVTLSTLMSAAARTKNLKFGKEV-----QCYCIRHSLESDIVLASITMDMYAKCGSIVDA 429

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
            ++  + + E DL +W  LL A    G   L+  A +   E++ ES   N++  +L
Sbjct: 430 KKVFDS-TVEKDLILWNTLLAAYAESG---LSGEALRLFYEMQLESVPPNVITWNL 481


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 168/550 (30%), Positives = 295/550 (53%), Gaps = 44/550 (8%)

Query: 57  NGIFIEA-HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG+F++   +   + S+       AYS  ++I I   +++ G ++HAQ+++ G    T +
Sbjct: 149 NGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFV 208

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
           +T L+  Y + Q I  +  +F+ + + N+  W A+   +     + +A  +F  M  +G+
Sbjct: 209 STALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGV 268

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
             +      V KA G L D+   +++    L+    ++  V ++LIDM SKCGS+++A+ 
Sbjct: 269 TPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARS 328

Query: 236 VFDE--MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW---------- 283
           +F+   +  +     NAM+SGY++ G   +AL L  ++    +  +  T+          
Sbjct: 329 IFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAAL 388

Query: 284 --------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                                     N + + ++K G    V K+F  M  +    D++S
Sbjct: 389 KCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDR----DLIS 444

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WTS+++        D+A + F  M ++G  P   T SS+L +CA+   +  G+++HG   
Sbjct: 445 WTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIIC 504

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
            +G++ D  + SALVDMYAKCG + +A+ +F+++S  +TV+W ++I G A HG  D+A++
Sbjct: 505 KVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQ 564

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF +M +   + + ++F  VL AC H GLVE G + F +M++ Y ++P  EHYAC+VDLL
Sbjct: 565 LFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLL 624

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
            R G L +A E I  M  EP+  VW  LLGAC+ HGN+EL E+AA+ +   + E++A  +
Sbjct: 625 SRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYV 684

Query: 557 LLTDLYANAG 566
           LL++ Y  +G
Sbjct: 685 LLSNTYIESG 694



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 132/524 (25%), Positives = 243/524 (46%), Gaps = 47/524 (8%)

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVS------GLARLTQIATKLITFYTECQN 128
           HL      + +   +  R L+  K +H  L+ S       L  L  +A      Y++C +
Sbjct: 65  HLQIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHA----YSKCSD 120

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I  A  LFD++ + N   W  L    A  G   +    F EM  QG+  + F    +L+ 
Sbjct: 121 IDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQI 180

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  L  I  G  +H+ ++   F +  FV ++L++MY+K   +E + KVF+ M E ++V+ 
Sbjct: 181 CIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSW 240

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL---------------ISGFS-- 291
           NAM++G+    L  +A +L   +    V P+  T+  +               +SG++  
Sbjct: 241 NAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALE 300

Query: 292 ---KSGDQV------MVSKLFQLMRAKGVEPD-------VVSWTSVISGLVHNFCNDEAF 335
               S   V      M SK   L  A+ +             W ++ISG + +  N++A 
Sbjct: 301 LGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKAL 360

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD-LHVRSALVDM 394
           + F +M          T  S+  A A+   +  GK++H  AI  G+E + + + +A+ + 
Sbjct: 361 ELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANA 420

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSF 453
           YAKCG + + R +F++M +R+ ++W S++   +     D+AIE+F+ M  E    +  +F
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
           ++VL +C ++ L+E GQ++  ++ +    M +    A +VD+  + G L +A ++   +S
Sbjct: 481 SSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESA-LVDMYAKCGCLGDAKKVFNRIS 539

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
              D   W A++     HG ++ A    + + +L  E  A   L
Sbjct: 540 N-ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFL 582



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 23/248 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H  +   GL     I + L+  Y +C  +  A+ +F+ I   +   W A+   
Sbjct: 493 LEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAG 552

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG-- 211
           +A+ G   +A+ +F  M   G++ N      VL AC H   +  G +   L +K ++G  
Sbjct: 553 HAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKL-MKKTYGLV 611

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM-----VSGYVQRG--LATE 263
            +    + ++D+ S+ G +  A +    M VE + +    +     V G V+ G   A +
Sbjct: 612 PEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQK 671

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSV 321
            L+   E        N  T+  L + + +SG       L  LM+ +GV  EP   SW SV
Sbjct: 672 ILSFKAE--------NSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPG-CSWISV 722

Query: 322 ISGLVHNF 329
            +G +H F
Sbjct: 723 -NGTLHKF 729


>gi|242089043|ref|XP_002440354.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
 gi|241945639|gb|EES18784.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
          Length = 866

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 165/417 (39%), Positives = 249/417 (59%), Gaps = 1/417 (0%)

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W A+    AR G  +EA  V   M  QGL+ +   + S+LK+   L  +  G + H   L
Sbjct: 290 WNAVLSGCARNGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHGMEAHGFFL 349

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           ++    D +  ++ +DMY+KCG +E A+KVFD +  ++I   N++V+GY   G    AL+
Sbjct: 350 RNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFDHALD 409

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           LVEE+   R+ P+V TWN LI+G+S +G       L + ++A G+ P+VVSWTS+ISG  
Sbjct: 410 LVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQAVLLLRQIKAIGLTPNVVSWTSLISGSC 469

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
           +N   +++F  F EM      P+  T+S +L ACA  A +++GKE+H  A+    + D+ 
Sbjct: 470 NNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELHCFALRRAYDRDMV 529

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
           V +AL+DMY+K G ++ A+ +F+++ E N V+ N+M+ G A HG   EAI LF+ M    
Sbjct: 530 VGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTGLAAHGQGHEAIALFHDMCNSG 589

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            K D ++FTA+LTAC  + LV  G   F+ M+ +Y + P  E+YACMVDLL R G L EA
Sbjct: 590 LKPDSITFTALLTACRSMDLVTEGWEYFDTMESRYGVTPTVENYACMVDLLARCGYLDEA 649

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            + I     +    +WGALL  C  HGN+ LAE AA+ L +LEP ++AN + +  LY
Sbjct: 650 MDFINKSPFKSVSSLWGALLTGCTLHGNLALAEAAARKLFKLEPYNSANYLQMVSLY 706



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 183/448 (40%), Gaps = 77/448 (17%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHR-----------WI 148
           LH+  + +G AR  ++A  L            AR L +E                   W 
Sbjct: 93  LHSLAVRAGHARDPRVACALADLLVRLGRGASARRLLEEATAVEEEGEDGDEEEDSVLWN 152

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
                 A      +A+  F EM  +G+  + +     L ACG       G+ +H+   K 
Sbjct: 153 KRVAMLAEAEEWGDAIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAAKA 212

Query: 209 S-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                   V   L  MY++   V  A++V  E  +   VA N +V+   + GL  +AL+L
Sbjct: 213 GHVAAHPLVPGFLAGMYAESADVGAARRVL-ETEDAPPVAWNVVVACCARLGLVDDALDL 271

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
            E +                   ++SG   +             EP + +W +V+SG   
Sbjct: 272 AERM-------------------ARSGRLEL-------------EPSLATWNAVLSGCAR 299

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N  + EAF   + ML QG  P S+++SS+L + AS   +  G E HG  +   +E D++ 
Sbjct: 300 NGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHGMEAHGFFLRNQLEPDVYT 359

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            +A VDMYAKCG +  A+ +FD +  RN  TWNS++ G AN G  D A++L  +M +R +
Sbjct: 360 GTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFDHALDLVEEM-KRNR 418

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
           LD    T                  +N +   Y +  ++     ++              
Sbjct: 419 LDPDVTT------------------WNGLINGYSVNGKSSQAVLLL-------------R 447

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIE 535
            IK +   P++  W +L+    N+G+ E
Sbjct: 448 QIKAIGLTPNVVSWTSLISGSCNNGDYE 475



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           N+  W +L       G ++++   F+EM    ++ ++  +  +L+AC  L+ +  G+++H
Sbjct: 457 NVVSWTSLISGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELH 516

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
              L+ ++  D  V ++LIDMYSK G++  A+++F+ + E ++V+ NAM++G    G   
Sbjct: 517 CFALRRAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTGLAAHGQGH 576

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS-KLFQLMRAK-GVEPDVVSWTS 320
           EA+ L  ++    +KP+ +T+  L++   +S D V    + F  M ++ GV P V ++  
Sbjct: 577 EAIALFHDMCNSGLKPDSITFTALLTA-CRSMDLVTEGWEYFDTMESRYGVTPTVENYAC 635

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
           ++  L      DEA D   +     F   S+   ++L  C    N+
Sbjct: 636 MVDLLARCGYLDEAMDFINK---SPFKSVSSLWGALLTGCTLHGNL 678



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 143/322 (44%), Gaps = 14/322 (4%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T  +  Y +C ++ +A+ +FD +   NI  W +L   YA  G    A+ +  EM    L 
Sbjct: 361 TAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFDHALDLVEEMKRNRLD 420

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS--SLIDMYSKCGSVEKAK 234
            ++     ++   G+  +  + + +  L    + G    VVS  SLI      G  E + 
Sbjct: 421 PDVTTWNGLIN--GYSVNGKSSQAVLLLRQIKAIGLTPNVVSWTSLISGSCNNGDYEDSF 478

Query: 235 KVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
             F+EM    V+  +V M+ ++       L  +   L           ++V    LI  +
Sbjct: 479 YFFNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELHCFALRRAYDRDMVVGTALIDMY 538

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           SKSG+     ++F+ ++    E ++VS  ++++GL  +    EA   F +M + G  P S
Sbjct: 539 SKSGNLASAQRIFERIQ----ENNLVSSNAMLTGLAAHGQGHEAIALFHDMCNSGLKPDS 594

Query: 351 ATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
            T +++L AC S   +  G E         GV   +   + +VD+ A+CG++ EA    +
Sbjct: 595 ITFTALLTACRSMDLVTEGWEYFDTMESRYGVTPTVENYACMVDLLARCGYLDEAMDFIN 654

Query: 410 KMSERNTVT-WNSMIFGCANHG 430
           K   ++  + W +++ GC  HG
Sbjct: 655 KSPFKSVSSLWGALLTGCTLHG 676



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 13/259 (5%)

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           V W   ++ L       +A   F EM ++G  P     +  L AC  A   R G+ +H  
Sbjct: 149 VLWNKRVAMLAEAEEWGDAIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAH 208

Query: 376 AIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
           A   G V     V   L  MYA+   +  AR + +   +   V WN ++  CA  G  D+
Sbjct: 209 AAKAGHVAAHPLVPGFLAGMYAESADVGAARRVLET-EDAPPVAWNVVVACCARLGLVDD 267

Query: 435 AIELFNQMEERKKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
           A++L  +M    +L+      ++ AVL+ C   G       +  +M ++  + P +   +
Sbjct: 268 ALDLAERMARSGRLELEPSLATWNAVLSGCARNGRDREAFGVVRIMLDQ-GLQPDSSSMS 326

Query: 491 CMVDLLGRAGRLA---EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
            ++  +   G LA   EA+        EPD++   A +      G++E A+   K    L
Sbjct: 327 SLLKSVASLGLLAHGMEAHGFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQ---KVFDTL 383

Query: 548 EPESAANNMLLTDLYANAG 566
           E  +      L   YANAG
Sbjct: 384 ELRNITTWNSLVAGYANAG 402



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK LH   +     R   + T LI  Y++  N+  A+ +F+ I + N+    A+   
Sbjct: 509 LKKGKELHCFALRRAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTG 568

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGT 212
            A  G   EA+ +FH+M   GLK +     ++L AC  +  +  G E   ++  ++    
Sbjct: 569 LAAHGQGHEAIALFHDMCNSGLKPDSITFTALLTACRSMDLVTEGWEYFDTMESRYGVTP 628

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM-NAMVSGYVQRG 259
                + ++D+ ++CG +++A    ++   K + ++  A+++G    G
Sbjct: 629 TVENYACMVDLLARCGYLDEAMDFINKSPFKSVSSLWGALLTGCTLHG 676


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 168/550 (30%), Positives = 295/550 (53%), Gaps = 44/550 (8%)

Query: 57  NGIFIEA-HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG+F++   +   + S+       AYS  ++I I   +++ G ++HAQ+++ G    T +
Sbjct: 149 NGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFV 208

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
           +T L+  Y + Q I  +  +F+ + + N+  W A+   +     + +A  +F  M  +G+
Sbjct: 209 STALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGV 268

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
             +      V KA G L D+   +++    L+    ++  V ++LIDM SKCGS+++A+ 
Sbjct: 269 TPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARS 328

Query: 236 VFDE--MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW---------- 283
           +F+   +  +     NAM+SGY++ G   +AL L  ++    +  +  T+          
Sbjct: 329 IFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAAL 388

Query: 284 --------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                                     N + + ++K G    V K+F  M  +    D++S
Sbjct: 389 KCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDR----DLIS 444

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WTS+++        D+A + F  M ++G  P   T SS+L +CA+   +  G+++HG   
Sbjct: 445 WTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIIC 504

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
            +G++ D  + SALVDMYAKCG + +A+ +F+++S  +TV+W ++I G A HG  D+A++
Sbjct: 505 KVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQ 564

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF +M +   + + ++F  VL AC H GLVE G + F +M++ Y ++P  EHYAC+VDLL
Sbjct: 565 LFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLL 624

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
            R G L +A E I  M  EP+  VW  LLGAC+ HGN+EL E+AA+ +   + E++A  +
Sbjct: 625 SRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYV 684

Query: 557 LLTDLYANAG 566
           LL++ Y  +G
Sbjct: 685 LLSNTYIESG 694



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 238/507 (46%), Gaps = 47/507 (9%)

Query: 92  RALQSGKILHAQLIVS------GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH 145
           R L+  K +H  L+ S       L  L  +A      Y++C +I  A  LFD++ + N  
Sbjct: 82  RFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHA----YSKCSDIDAACRLFDQMSQRNTF 137

Query: 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            W  L    A  G   +    F EM  QG+  + F    +L+ C  L  I  G  +H+ +
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +   F +  FV ++L++MY+K   +E + KVF+ M E ++V+ NAM++G+    L  +A 
Sbjct: 198 VIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAF 257

Query: 266 NLVEEIGTPRVKPNVVTWNTL---------------ISGFS-----KSGDQV------MV 299
           +L   +    V P+  T+  +               +SG++      S   V      M 
Sbjct: 258 DLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMN 317

Query: 300 SKLFQLMRAKGVEPD-------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           SK   L  A+ +             W ++ISG + +  N++A + F +M          T
Sbjct: 318 SKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYT 377

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKM 411
             S+  A A+   +  GK++H  AI  G+E + + + +A+ + YAKCG + + R +F++M
Sbjct: 378 YCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRM 437

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQ 470
            +R+ ++W S++   +     D+AIE+F+ M  E    +  +F++VL +C ++ L+E GQ
Sbjct: 438 EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQ 497

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
           ++  ++ +    M +    A +VD+  + G L +A ++   +S   D   W A++     
Sbjct: 498 QVHGIICKVGLDMDKCIESA-LVDMYAKCGCLGDAKKVFNRISN-ADTVSWTAIIAGHAQ 555

Query: 531 HGNIELAEIAAKHLSELEPESAANNML 557
           HG ++ A    + + +L  E  A   L
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFL 582



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEG--DLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +L  C  A  +++ K +HG  +         L + + +   Y+KC  I  A  LFD+MS+
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL 472
           RNT +W  +I G A +G   +  E F +M+ +    D  +++ +L  C  +  +ELG   
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG--- 190

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE---AYEMIKTMSTEPDLFVWGALL 525
            NM+  +  I   T H      LL    +L E   +Y++  TM TE ++  W A++
Sbjct: 191 -NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-TEVNVVSWNAMI 244


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 275/498 (55%), Gaps = 37/498 (7%)

Query: 105 IVSGLARLTQIATKLITF-YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA 163
           I SG+ R   +++KL+ +  +   +   +R LF +I K N+  W  +  AY+R  +  E 
Sbjct: 52  IASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAET 111

Query: 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223
           + +++ M   G   + +  P VLKAC  LS +  G +IHS  LK     D FV ++LI  
Sbjct: 112 IALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISA 171

Query: 224 YSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVEE-IGTPRVKPNV 280
           +S CG+VE A+ VFD +  + +D+V+ N+M+SGY+Q      AL +  E +G   + P+ 
Sbjct: 172 FSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDE 231

Query: 281 VTWNTLIS-----GFSKSGDQV---------------------MVSKLFQLMRAKGV--- 311
           VT  + +S     G    G ++                     M SK  Q+  A+ V   
Sbjct: 232 VTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDR 291

Query: 312 --EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
               + V WTS+I+G   +    EA + F+EM   GF   +ATI+ +L AC     + +G
Sbjct: 292 IPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG 351

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
           + IH       +E DL+ R+AL+ MY+KCG I +A  +F  +++ +  +W+++I G A +
Sbjct: 352 RWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMN 411

Query: 430 GYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           G  D+A+ LF+QME    +  + ++F  VL AC H G V+ G   FN M + Y + P  E
Sbjct: 412 GESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIE 471

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           HY CMVDLLGRA  L EA + I+T+  +PD+ +W +LL AC+NHGNIELAE AAK + EL
Sbjct: 472 HYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEEL 531

Query: 548 EPESAANNMLLTDLYANA 565
           EP      +LL+++YA+A
Sbjct: 532 EPRRCGARVLLSNVYASA 549



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 173/392 (44%), Gaps = 45/392 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--TNIHRWIALT 151
           L  G+ +H+  +  G+     +   LI+ ++ C  +  AR +FD +P    ++  W ++ 
Sbjct: 143 LHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMI 202

Query: 152 GAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             Y +   ++ A+ VF E+   G L  +   + S L  CG L  +  G+KIH L     F
Sbjct: 203 SGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGF 262

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D FV SSLIDMYSKCG +E A+KVFD +  ++ V   +M++GY Q  L  EA+ L  E
Sbjct: 263 VLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFRE 322

Query: 271 IGTPRVKPNVVT----------W-------------------------NTLISGFSKSGD 295
           +       +  T          W                         N LI  +SK GD
Sbjct: 323 MQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGD 382

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATIS 354
                ++F  +     +PD+ SW++VISGL  N  +D+A   F +M +     P   T  
Sbjct: 383 IQKALEIFHGL----TQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFL 438

Query: 355 SILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS- 412
            +L AC     + +G    +    +  +   +     +VD+  +   + EA      +  
Sbjct: 439 GVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPI 498

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           + + V W S++F C NHG  + A     Q+EE
Sbjct: 499 QPDVVIWRSLLFACRNHGNIELAEFAAKQIEE 530


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 171/510 (33%), Positives = 275/510 (53%), Gaps = 40/510 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G  LH   + +       I T  +  Y +C N+  A+ LF+ +P  N+  + A+  
Sbjct: 290 ALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIV 349

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YAR     EA+ +F  +   GL  +   +    +AC  +     G ++H L +K    +
Sbjct: 350 GYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQS 409

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++++DMY KCG++ +A  VF+EMV +D V+ NA+++ + Q G   + L+L   + 
Sbjct: 410 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 469

Query: 273 TPRVKPNVVTWNT-----------------------------------LISGFSKSGDQV 297
              ++P+  T+ +                                   LI  +SK G   
Sbjct: 470 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMME 529

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              KL   +     E  VVSW ++ISG      ++EA  TF +ML  G  P + T ++IL
Sbjct: 530 KAEKLHDRL----AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATIL 585

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             CA+   +  GK+IH   I   ++ D ++ S LVDMY+KCG + + + +F+K   R+ V
Sbjct: 586 DTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFV 645

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TWN+M+ G A HG  +EA+++F  M+ E  K +H +F AVL AC H+GLVE G   F+ M
Sbjct: 646 TWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSM 705

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
              Y + P+ EHY+C+VD++GR+G++++A E+I+ M  E D  +W  LL  CK HGN+E+
Sbjct: 706 LSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEV 765

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE AA  + +LEPE +A  +LL+++YANAG
Sbjct: 766 AEKAAYSILQLEPEDSAAYVLLSNIYANAG 795



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 150/635 (23%), Positives = 270/635 (42%), Gaps = 91/635 (14%)

Query: 7   LFPIR-------DKPFQFTLSMNDFYSIRRIYFALLSGTQLVLSCS-KSASDAGKPLING 58
           LFPIR         PF+ TL ++ F S +       + + +   CS + A   GK     
Sbjct: 9   LFPIRFFFNFQSKSPFK-TLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGK----- 62

Query: 59  IFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK 118
              +AH +M  I   F  +    +  I++YI+   L+      A  +  G+ +   ++  
Sbjct: 63  ---QAHARM--ILTEFKPTVFVTNCLIQMYIKCSDLE-----FAFKVFDGMPQRDTVSWN 112

Query: 119 LITF-YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            + F Y    +I  A+ LFD +P+ ++  W +L   Y   G H++ + VF +M   G   
Sbjct: 113 AMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVF 172

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +      VLK+C  L D G G +IH L +K  F  D    S+L+DMY+KC  ++ + + F
Sbjct: 173 DRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFF 232

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI---SGFS--K 292
             M EK+ V+ +A+++G VQ       L L +E+    V  +  T+ ++    +G S  +
Sbjct: 233 HSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALR 292

Query: 293 SGDQV---------------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLV 326
            G Q+                     M  K   L  A+ +       ++ S+ ++I G  
Sbjct: 293 LGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA 352

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
            +    EA   F+ +   G      ++S    ACA       G ++HG ++    + ++ 
Sbjct: 353 RSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNIC 412

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
           V +A++DMY KCG + EA  +F++M  R+ V+WN++I     +G  ++ + LF  M +  
Sbjct: 413 VANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG 472

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFN-------------------------MMQEKY 480
            + D  ++ +VL AC     +  G  + N                         MM++  
Sbjct: 473 MEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAE 532

Query: 481 KIMPRTEHYACM--------VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           K+  R      +          L  ++    + +  +  M  +PD F +  +L  C N  
Sbjct: 533 KLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLV 592

Query: 533 NIELAEIAAKHLSELEPESAAN-NMLLTDLYANAG 566
            +EL +     + + E +S A  +  L D+Y+  G
Sbjct: 593 TVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 627



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 123/235 (52%), Gaps = 7/235 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL  G  +H ++I S L   + +   LI  Y++C  +  A  L D + +  +  W A+ 
Sbjct: 491 QALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAII 550

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             ++ +   +EA   F +M   G+  + F   ++L  C +L  +  G++IH+ ++K    
Sbjct: 551 SGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQ 610

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +DA++ S+L+DMYSKCG+++  + +F++   +D V  NAMV GY Q GL  EAL + E +
Sbjct: 611 SDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYM 670

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSK----LFQLMRAKGVEPDVVSWTSVI 322
               VKPN  T+  ++      G   +V K       ++   G++P +  ++ V+
Sbjct: 671 QLENVKPNHATFLAVLRACGHMG---LVEKGLHYFHSMLSNYGLDPQLEHYSCVV 722


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/551 (31%), Positives = 291/551 (52%), Gaps = 47/551 (8%)

Query: 53  KPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           KP  +   I  H+   +     H       + + +  +  + +S + +H Q+I++ + + 
Sbjct: 3   KPKASSHLISRHFTKALAKSQRHAQQTLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHK- 61

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW-IALTGAYARRGYHQEAVTVFHEMH 171
                 L+  + + ++ ++A +LF +IP  N + + I + G           +  +++M 
Sbjct: 62  ---PNFLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMK 118

Query: 172 IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
             G++ N F  P V  AC +L  +  G+  HS VLK     D  V  SLI MYS+CG + 
Sbjct: 119 DFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELG 178

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT--------- 282
            A++VFDE+ EKD+V+ N+M+SGY + G A +A+ L  E+     +P+ +T         
Sbjct: 179 CARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACG 238

Query: 283 ---------W-----------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV 316
                    W                 + LI  + K GD     ++F  M    V+ DVV
Sbjct: 239 DLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRM----VKKDVV 294

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
           +W ++I+G   N  +DEA   F  M   G  P   T+  +L ACAS   +  GK +   A
Sbjct: 295 TWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYA 354

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
              G++ D++V +AL+DMYAKCG + +A  +F+ M ++N V+WN+MI   A HG   E++
Sbjct: 355 SERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESL 414

Query: 437 ELFNQMEERK---KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
            LF +M +     + + +SF  VL+AC H GLV+ G++LF++M   + ++P+ EH++CMV
Sbjct: 415 SLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMV 474

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           DLL RAG + EA++ I+ M  +PD  V GALLGAC+   N++++E     L E+EP ++ 
Sbjct: 475 DLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSG 534

Query: 554 NNMLLTDLYAN 564
           N ++ + ++AN
Sbjct: 535 NYIISSKIFAN 545


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 175/509 (34%), Positives = 270/509 (53%), Gaps = 44/509 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L S   +HAQ++ + L +   +A KLI  ++ C+++  A  +F+ +P  N+H + ++  A
Sbjct: 34  LDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRA 93

Query: 154 YARRGYHQE-AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           +A    H+      F +M   GL  + F  P +LKAC   S +     IH+ V K  F  
Sbjct: 94  HAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYG 153

Query: 213 DAFVVSSLIDMYSKCGS---------------------------------VEKAKKVFDE 239
           D FV +SLID YS+CG+                                 ++ A K+FDE
Sbjct: 154 DIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDE 213

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M ++D+V+ N M+ GY + G    A  L E +       N+V+W+T++ G+SK GD  M 
Sbjct: 214 MPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPW----RNIVSWSTMVCGYSKGGDMDMA 269

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             LF     K    +VV WT++I+G        EA + + +M   G  P    + SIL A
Sbjct: 270 RMLFDRCPVK----NVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAA 325

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK-MSERNTVT 418
           CA +  +  GK IH             V +A +DMYAKCG +  A  +F   M++++ V+
Sbjct: 326 CAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVS 385

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNSMI G A HG+ ++A+ELF+ M +E  + D  +F  +L AC H GLV  G++ F  M+
Sbjct: 386 WNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSME 445

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y I+P+ EHY CM+DLLGR G L EA+ ++++M  EP+  + G LL AC+ H +++LA
Sbjct: 446 KVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLA 505

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
               + L +LEP    N  LL+++YA AG
Sbjct: 506 RAVCEQLFKLEPSDPGNYSLLSNIYAQAG 534



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 172/407 (42%), Gaps = 57/407 (14%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L  C +L  +    +IH+ VLK +   D FV   LI  +S C  +  A  VF+ +   ++
Sbjct: 28  LHKCTNLDSV---NQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNV 84

Query: 246 VAMNAMVSGYV----QRGLATEALNLVEEIGT----------------PRVKP------- 278
              N+++  +      R L   A   +++ G                 P   P       
Sbjct: 85  HLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHA 144

Query: 279 ---------NVVTWNTLISGFSKSGDQVM--VSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                    ++   N+LI  +S+ G+  +     LF  M     E DVV+W S+I GLV 
Sbjct: 145 HVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAME----ERDVVTWNSMIGGLVR 200

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                 A   F EM  +       + +++L   A A  M    E+        +      
Sbjct: 201 CGELQGACKLFDEMPDRDM----VSWNTMLDGYAKAGEMDTAFELFERMPWRNIVS---- 252

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
            S +V  Y+K G +  AR LFD+   +N V W ++I G A  G   EA EL+ +MEE   
Sbjct: 253 WSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGM 312

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + D     ++L AC   G++ LG+R+   M+ +++     +     +D+  + G L  A+
Sbjct: 313 RPDDGFLLSILAACAESGMLGLGKRIHASMR-RWRFRCGAKVLNAFIDMYAKCGCLDAAF 371

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELA-EIAAKHLSE-LEPES 551
           ++   M  + D+  W +++     HG+ E A E+ +  + E  EP++
Sbjct: 372 DVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDT 418


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 270/481 (56%), Gaps = 45/481 (9%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R ++    K ++A +I+ GL++ + + TK++ F  + +++ +A  LF+++   N+  + +
Sbjct: 19  RVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNS 78

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           +  AY     + + + ++ ++  +  +  + F  P + K+C  L     G+++H  + K 
Sbjct: 79  IIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCK- 137

Query: 209 SFGTDAFVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
            FG    VV+  +LIDMY K   +  A KVFDEM E+D                      
Sbjct: 138 -FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERD---------------------- 174

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                        V++WN+L+SG+++ G       LF LM    ++  +VSWT++ISG  
Sbjct: 175 -------------VISWNSLLSGYARLGQMKKAKGLFHLM----LDKTIVSWTAMISGYT 217

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
              C  EA D F+EM   G  P   ++ S+LP+CA   ++  GK IH  A   G      
Sbjct: 218 GIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTG 277

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           V +AL++MY+KCG IS+A  LF +M  ++ ++W++MI G A HG    AIE FN+M+  K
Sbjct: 278 VCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAK 337

Query: 447 -KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            K + ++F  +L+AC HVG+ + G R F+MM++ Y+I P+ EHY C++D+L RAG+L  A
Sbjct: 338 VKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERA 397

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            E+ KTM  +PD  +WG+LL +C+  GN+++A +A  HL ELEPE   N +LL ++YA+ 
Sbjct: 398 VEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADL 457

Query: 566 G 566
           G
Sbjct: 458 G 458



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 16/190 (8%)

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           +P      +    K+I+   I+ G+     + + +VD   K   +  A  LF+++S  N 
Sbjct: 14  IPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNV 73

Query: 417 VTWNSMIFGCA-NHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVELGQRL 472
             +NS+I     N  YCD  I ++ Q+  RK     D  +F  +  +C  +G   LG+++
Sbjct: 74  FLYNSIIRAYTHNSLYCD-VIRIYKQL-LRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131

Query: 473 FNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
              +    K  PR    TE+   ++D+  +   L +A+++   M  E D+  W +LL   
Sbjct: 132 HGHL---CKFGPRFHVVTEN--ALIDMYMKFDDLVDAHKVFDEM-YERDVISWNSLLSGY 185

Query: 529 KNHGNIELAE 538
              G ++ A+
Sbjct: 186 ARLGQMKKAK 195


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 170/504 (33%), Positives = 271/504 (53%), Gaps = 38/504 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +HA ++  G      +   LI+ Y+    +  AR +FD++   +   W ++   Y R
Sbjct: 213 GLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   E   +F++M + G+K       SV+K+C  L ++   + +    LK  F TD  V
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV 332

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           +++L+   SKC  ++ A  +F  M E K++V+  AM+SG +Q G   +A+NL  ++    
Sbjct: 333 ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG 392

Query: 276 VKPNVVTWNT-------------------------------LISGFSKSGDQVMVSKLFQ 304
           VKPN  T++                                L+  + K G+ +   K+F+
Sbjct: 393 VKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFE 452

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS-A 363
           ++ AK    D+++W+++++G       +EA   F +++ +G  P   T SS++ ACAS  
Sbjct: 453 IIEAK----DLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPT 508

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A   +GK+ H  AI M +   L V SALV MYAK G I  A  +F +  ER+ V+WNSMI
Sbjct: 509 AAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMI 568

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G + HG   +A+E+F++M++R   +D ++F  V+TAC H GLVE GQ+ FN M   + I
Sbjct: 569 SGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHI 628

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P  +HY+CM+DL  RAG L +A  +I  M   P   VW  LLGA + H N+EL E+AA+
Sbjct: 629 NPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAE 688

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L  L+PE +A  +LL+++YA AG
Sbjct: 689 KLISLQPEDSAAYVLLSNMYAAAG 712



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 236/485 (48%), Gaps = 60/485 (12%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H Q +  GL     + T L+  Y + +N++  R +FDE+ + N+  W +L   Y+ 
Sbjct: 112 GRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSW 171

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G +     +F +M  +G+  N + + +V+ A  +   +G G ++H++V+KH F     V
Sbjct: 172 NGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPV 231

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI +YS+ G +  A+ VFD+M  +D V  N+M++GYV+ G   E   +  ++    V
Sbjct: 232 FNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGV 291

Query: 277 KPNVVTWNTLI---------------------SGFSKSGDQVMVSKLF-QLMRAKGVE-- 312
           KP  +T+ ++I                     SGF+   DQ++++ L   L + K ++  
Sbjct: 292 KPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTT--DQIVITALMVALSKCKEMDDA 349

Query: 313 ----------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL----P 358
                      +VVSWT++ISG + N  ND+A + F +M  +G  P   T S+IL    P
Sbjct: 350 LSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYP 409

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
              S        E+H   I    E    V +AL+D Y K G   +A  +F+ +  ++ + 
Sbjct: 410 VFVS--------EMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMA 461

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCH-VGLVELGQRLFNMM 476
           W++M+ G A  G  +EA +LF+Q+ +E  K +  +F++V+ AC       E G++     
Sbjct: 462 WSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF---- 517

Query: 477 QEKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              Y I  R  +  C    +V +  + G +  A+E+ K    E DL  W +++     HG
Sbjct: 518 -HAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQHG 575

Query: 533 NIELA 537
             + A
Sbjct: 576 QAKKA 580



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 205/443 (46%), Gaps = 41/443 (9%)

Query: 130 HHARMLFDEIP--KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           H A  LFD+IP   T +     L  +Y+R    +EA+ +F  +    L+ +   +  V  
Sbjct: 42  HIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFN 101

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
            C    D   G ++H   +K        V +SL+DMY K  +V   ++VFDEM E+++V+
Sbjct: 102 ICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVS 161

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQV----- 297
             ++++GY   GL      L  ++    V PN  T +T+I+     G    G QV     
Sbjct: 162 WTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVV 221

Query: 298 ----------------MVSKLFQLMRAKGVEP-----DVVSWTSVISGLVHNFCNDEAFD 336
                           + S+L  L  A+ V       D V+W S+I+G V N  + E F+
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFE 281

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M   G  PT  T +S++ +CAS   +   K +   A+  G   D  V +AL+   +
Sbjct: 282 IFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALS 341

Query: 397 KCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           KC  + +A +LF  M E +N V+W +MI GC  +G  D+A+ LF+QM  E  K +H +++
Sbjct: 342 KCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYS 401

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           A+LT    V + E+   +     E+   +        ++D   + G   +A ++ + +  
Sbjct: 402 AILTVHYPVFVSEMHAEVIKTNYERSSSVG-----TALLDAYVKLGNTIDAVKVFEIIEA 456

Query: 515 EPDLFVWGALLGACKNHGNIELA 537
           + DL  W A+L      G  E A
Sbjct: 457 K-DLMAWSAMLAGYAQTGETEEA 478



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 114/220 (51%), Gaps = 5/220 (2%)

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA + F  +L     P  +T+S +   CA + + + G+++H   +  G+   + V ++LV
Sbjct: 76  EALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLV 135

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
           DMY K   +++ R +FD+M ERN V+W S++ G + +G      ELF QM+    L +  
Sbjct: 136 DMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRY 195

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           + + V+ A  + G+V +G ++  M+  K+        +  ++ L  R G L +A ++   
Sbjct: 196 TVSTVIAALVNEGVVGIGLQVHAMVV-KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDK 254

Query: 512 MSTEPDLFVWGALL-GACKNHGNIELAEIAAK-HLSELEP 549
           M    D   W +++ G  +N  ++E+ EI  K  L+ ++P
Sbjct: 255 MEIR-DWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKP 293


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 164/502 (32%), Positives = 272/502 (54%), Gaps = 41/502 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           ++A+L+V+GL     +  KL+   +    +  AR LFD+ P  ++  W A+   Y+R G+
Sbjct: 94  IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF 153

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
              A+ ++  M +  +  + F  P VLKAC  L  +  G ++H  + +H F +D FV + 
Sbjct: 154 FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNG 213

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ +Y+KCG + +A  VF  +V++ IV+  +++SGY Q G   EAL +  E+    V+P+
Sbjct: 214 LVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPD 273

Query: 280 VVTWNTLISGFSKSGD----------------------------------QVMVSKLFQL 305
            +   +++  ++   D                                   VMV++LF  
Sbjct: 274 WIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLF-- 331

Query: 306 MRAKGVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
                VE P ++ W ++ISG V N   +EA + F+ M S+   P S T++S + ACA   
Sbjct: 332 --FNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIG 389

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           ++   + +     +     D+ V ++L+D YAKCG +  AR +FD++ +++ V W++M+ 
Sbjct: 390 SLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMV 449

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G   HG   E+I LF+ M +     + ++F  +LTAC + GLVE G  LF+ M++ Y I 
Sbjct: 450 GYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIE 508

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           PR +HYAC+VDLLGRAG L  AY  +  M  EP + VWGALL ACK H ++ L E AA+ 
Sbjct: 509 PRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAER 568

Query: 544 LSELEPESAANNMLLTDLYANA 565
           L  L+P +  + + L++LYA++
Sbjct: 569 LFSLDPYNTGHYVQLSNLYASS 590



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 172/373 (46%), Gaps = 48/373 (12%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +I++ +L        F+++ L++  S  G V  A+K+FD+  + D+   NA+V  Y + G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 260 LATEALNLVEEIGTPRVKP-----------------------------------NVVTWN 284
               A+ +   +    V P                                   +V   N
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
            L++ ++K G+ V  + +F     + V+  +VSWTS+ISG   N    EA   F EM   
Sbjct: 213 GLVALYAKCGEIVRANAVF----GRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKT 268

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
              P    + S+L A     ++  GK IHGC I MG+E +  +  +L  +YAKCG +  A
Sbjct: 269 NVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVA 328

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV 463
           R  F+++   + + WN+MI G   +GY +EAIELF  M+ +  + D ++ T+ + AC  +
Sbjct: 329 RLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQI 388

Query: 464 GLVELGQRL---FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
           G +EL + +    +M + +  ++  T     ++D   + G +  A  +   +  + D+ V
Sbjct: 389 GSLELARWMDEYISMSEFRNDVIVNTS----LIDTYAKCGSVDMARFVFDRIP-DKDVVV 443

Query: 521 WGALLGACKNHGN 533
           W A++     HG 
Sbjct: 444 WSAMMVGYGLHGQ 456



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 158/373 (42%), Gaps = 40/373 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H Q+   G      +   L+  Y +C  I  A  +F  +    I  W ++  
Sbjct: 188 ALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIIS 247

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G   EA+ +F EM    ++ +   + SVL+A   + D+  G+ IH  V+K     
Sbjct: 248 GYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEC 307

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  ++ SL  +Y+KCG V  A+  F+++    ++  NAM+SGYV+ G A EA+ L   + 
Sbjct: 308 EFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMK 367

Query: 273 TPRVKPNVVT------------------W-----------------NTLISGFSKSGDQV 297
           +  ++P+ +T                  W                  +LI  ++K G   
Sbjct: 368 SKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVD 427

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           M   +F  +  K    DVV W++++ G   +    E+   F  M   G  P   T   +L
Sbjct: 428 MARFVFDRIPDK----DVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLL 483

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNT 416
            AC ++  +  G ++       G+E      + +VD+  + G +  A      M  E   
Sbjct: 484 TACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGV 543

Query: 417 VTWNSMIFGCANH 429
             W +++  C  H
Sbjct: 544 SVWGALLSACKIH 556


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 283/541 (52%), Gaps = 68/541 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITF---YTECQNIHHARMLFDEIPKTNIHRWIAL 150
           LQS +++HAQ+I +GL       +KLI F         + +A  +F+ I + N+  W  +
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +A       A+ ++  M   GL  N +  P +LK+C        G++IH  VLK   
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 211 GTDAFVVSSLIDMYSKCGS-------------------------------VEKAKKVFDE 239
             D +V +SLI MY + G                                +E A+K+FDE
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD---- 295
           +  KD+V+ NAM+SGY + G   EAL L +++    V+P+  T  T++S  ++SG     
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 296 -QV---------------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHN 328
            QV                     + SK  +L  A G+       DV+SW ++I G  H 
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMGVEGDLH 386
               EA   F+EML  G  P   T+ SILPACA    +  G+ IH      + GV     
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASS 362

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           +R++L+DMYAKCG I  A  +F+ +  ++  +WN+MIFG A HG  D + ++F++M +  
Sbjct: 363 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNG 422

Query: 447 -KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + D ++F  +L+AC H G+++LG+ +F  M + YK+ P+ EHY CM+DLLG +G   EA
Sbjct: 423 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 482

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            EMI TM  EPD  +W +LL ACK HGN+EL E  A++L ++EPE+  + +LL+++YA A
Sbjct: 483 EEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATA 542

Query: 566 G 566
           G
Sbjct: 543 G 543



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 186/431 (43%), Gaps = 58/431 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K    G  I  H    ++     L    ++  I +Y+     Q+G++
Sbjct: 97  LLKSCAKS-----KAFKEGQQIHGH----VLKLGCDLDLYVHTSLISMYV-----QNGRL 142

Query: 100 LHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
             A  +         ++ T LI  Y     I +A+ +FDEIP  ++  W A+   YA  G
Sbjct: 143 EDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETG 202

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            ++EA+ +F +M    ++ +   + +V+ AC     I  G ++HS +  H FG++  +V+
Sbjct: 203 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVN 262

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +LID+YSKCG +E A  +F+ +  KD+++ N ++ GY    L  EAL L +E+      P
Sbjct: 263 ALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 322

Query: 279 NVVT------------------W-------------------NTLISGFSKSGDQVMVSK 301
           N VT                  W                    +LI  ++K GD     +
Sbjct: 323 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQ 382

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  +  K +     SW ++I G   +   D +FD F  M   G  P   T   +L AC+
Sbjct: 383 VFNSILHKSLS----SWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACS 438

Query: 362 SAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTW 419
            +  +  G+ I         +   L     ++D+    G   EA  + + M  E + V W
Sbjct: 439 HSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIW 498

Query: 420 NSMIFGCANHG 430
            S++  C  HG
Sbjct: 499 CSLLKACKMHG 509


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 170/535 (31%), Positives = 284/535 (53%), Gaps = 36/535 (6%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           + +IS   H     Y+  +        L+ G+ LH+ +I         +   LI  Y + 
Sbjct: 307 LDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKA 366

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
             +  A   F+ +   +   W A+   Y +      A ++F  M + G+  +   + S+L
Sbjct: 367 GALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASIL 426

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
            ACG++  +  G++ H L +K    T+ F  SSLIDMYSKCG ++ A K +  M E+ +V
Sbjct: 427 SACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVV 486

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
           ++NA+++GY  +    E++NL+ E+    +KP+ +T+ +LI     S   ++  ++   +
Sbjct: 487 SVNALIAGYALKN-TKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAI 545

Query: 307 RAKGVE---------------------------------PDVVSWTSVISGLVHNFCNDE 333
             +G+                                    +V WT++ISG + N C+D 
Sbjct: 546 VKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDV 605

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A + ++EM      P  AT  ++L ACA  +++  G+EIH      G + D    SALVD
Sbjct: 606 ALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVD 665

Query: 394 MYAKCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHL 451
           MYAKCG +  +  +F+++ ++++ ++WNSMI G A +GY   A+++F++M +     D +
Sbjct: 666 MYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDV 725

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  VLTAC H G V  G+++F++M   Y I PR +HYACMVDLLGR G L EA E I  
Sbjct: 726 TFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDK 785

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +  EP+  +W  LLGAC+ HG+ +  + AAK L ELEP+S++  +LL+++YA +G
Sbjct: 786 LEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASG 840



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 226/479 (47%), Gaps = 49/479 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G ++HA  I  G      +A+ LI  Y +CQ    AR +FD I + N+  W A+ G
Sbjct: 232 ALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLG 291

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++ G+    + +F +M   G+  + F   S+L  C     +  G ++HS ++K  F +
Sbjct: 292 VYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTS 351

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + FV ++LIDMY+K G++++A K F+ M  +D ++ NA++ GYVQ  +   A +L   + 
Sbjct: 352 NLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMI 411

Query: 273 TPRVKP-----------------------------------NVVTWNTLISGFSKSGDQV 297
              + P                                   N+   ++LI  +SK GD  
Sbjct: 412 LDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIK 471

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K +  M     E  VVS  ++I+G        E+ +   EM   G  P+  T +S++
Sbjct: 472 DAHKTYSSMP----ERSVVSVNALIAGYALK-NTKESINLLHEMQILGLKPSEITFASLI 526

Query: 358 PACASAANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-R 414
             C  +A +  G +IH CAIV    + G   + ++L+ MY     +++A  LF + S  +
Sbjct: 527 DVCKGSAKVILGLQIH-CAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLK 585

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V W ++I G   +   D A+ L+ +M +     D  +F  VL AC  +  +  G+ + 
Sbjct: 586 SIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIH 645

Query: 474 NMM-QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKN 530
           +++    + +   T   + +VD+  + G +  + ++ + ++T+ D+  W +++ G  KN
Sbjct: 646 SLIFHTGFDLDELTS--SALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKN 702



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 190/373 (50%), Gaps = 9/373 (2%)

Query: 157 RGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + Y  E V  F+   +  G   + F     L AC  L ++  G  +HS V+K    + +F
Sbjct: 24  KHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSF 83

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDI--VAMNAMVSGYVQRGLATEALNLVEEIGT 273
              +LI +Y+KC S+  A+ +F       +  V+  A++SGYVQ GL  EAL++ +++  
Sbjct: 84  CQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRN 143

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             V P+ V   T+++ +   G      +LFQ M       +VV+W  +ISG       +E
Sbjct: 144 SAV-PDQVALVTVLNAYISLGKLDDACQLFQQMPIP--IRNVVAWNVMISGHAKTAHYEE 200

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   F +M   G   + +T++S+L A AS A +  G  +H  AI  G E  ++V S+L++
Sbjct: 201 ALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLIN 260

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLS 452
           MY KC    +AR +FD +S++N + WN+M+   + +G+    +ELF  M       D  +
Sbjct: 261 MYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFT 320

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           +T++L+ C     +E+G++L + + +K +          ++D+  +AG L EA +  + M
Sbjct: 321 YTSILSTCACFEYLEVGRQLHSAIIKK-RFTSNLFVNNALIDMYAKAGALKEAGKHFEHM 379

Query: 513 STEPDLFVWGALL 525
            T  D   W A++
Sbjct: 380 -TYRDHISWNAII 391



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 198/460 (43%), Gaps = 76/460 (16%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH--RWIALT 151
           L  G+ +H+ +I SGL   +     LI  Y +C ++  AR +F   P  ++H   W AL 
Sbjct: 63  LHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALI 122

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y + G   EA+ +F +M                                    ++S  
Sbjct: 123 SGYVQAGLPHEALHIFDKM------------------------------------RNSAV 146

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
            D   + ++++ Y   G ++ A ++F +M    +++VA N M+SG+ +     EAL    
Sbjct: 147 PDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFH 206

Query: 270 EIGTPRVKPNVVTWNTLISGFS----------------KSG--DQVMVSKLFQLMRAKGV 311
           ++    VK +  T  +++S  +                K G    + V+     M  K  
Sbjct: 207 QMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQ 266

Query: 312 EPD-------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            PD             ++ W +++     N       + F +M+S G  P   T +SIL 
Sbjct: 267 MPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILS 326

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
            CA    +  G+++H   I      +L V +AL+DMYAK G + EA   F+ M+ R+ ++
Sbjct: 327 TCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHIS 386

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I G         A  LF +M     + D +S  ++L+AC ++ ++E GQ+ F+ + 
Sbjct: 387 WNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQ-FHCLS 445

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            K  +       + ++D+  + G + +A+   KT S+ P+
Sbjct: 446 VKLGLETNLFAGSSLIDMYSKCGDIKDAH---KTYSSMPE 482



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 161/326 (49%), Gaps = 14/326 (4%)

Query: 97  GKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIPK-TNIHRWIALTGAY 154
           G  +H  ++  GL   ++ + T L+  Y + Q +  A +LF E     +I  W AL   +
Sbjct: 538 GLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGH 597

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            +      A+ ++ EM    +  +     +VL+AC  LS +  G +IHSL+    F  D 
Sbjct: 598 IQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDE 657

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
              S+L+DMY+KCG V+ + +VF+E+  +KD+++ N+M+ G+ + G A  AL + +E+  
Sbjct: 658 LTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQ 717

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCND 332
             + P+ VT+  +++  S +G      ++F +M    G+EP V  +  ++  L       
Sbjct: 718 SCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLK 777

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA +   ++  +   P +   +++L AC    + +RG+     A    +E +    S  V
Sbjct: 778 EAEEFIDKLEVE---PNAMIWANLLGACRIHGDEKRGQR----AAKKLIELEPQSSSPYV 830

Query: 393 ---DMYAKCGFISEARTLFDKMSERN 415
              +MYA  G   EAR+L   M +++
Sbjct: 831 LLSNMYAASGNWDEARSLRRTMIKKD 856



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           V  W   + G  H + ++     +   ++ G  P   T +  L ACA   N+  G+ +H 
Sbjct: 13  VRQWNWRVQGTKH-YSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHS 71

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK--MSERNTVTWNSMIFGCANHGYC 432
           C I  G+E     + AL+ +YAKC  ++ ART+F        +TV+W ++I G    G  
Sbjct: 72  CVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLP 131

Query: 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            EA+ +F++M      D ++   VL A   +G ++   +LF  M
Sbjct: 132 HEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQM 175


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 178/544 (32%), Positives = 286/544 (52%), Gaps = 43/544 (7%)

Query: 60  FIEAHYKMPIISRSFH-LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK 118
           FIEA      +    H L+P  ++  +++ +     + G+I+H  ++  G    T I T 
Sbjct: 27  FIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTA 86

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           LI  Y+    +  AR +FDEI   ++  W  +  +YA      EA+  F +M + G K N
Sbjct: 87  LIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPN 146

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F    VLKAC  L +   G+ +H  VLK ++  D +V   L+++Y++CG  + A + F 
Sbjct: 147 NFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFG 206

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------------- 283
           +M + D++  + M+S + Q G + +AL +  ++    V PN  T+               
Sbjct: 207 DMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDL 266

Query: 284 --------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                               N L++ ++K G      +LF+ +  +    + VSW ++I 
Sbjct: 267 SKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDR----NDVSWNTIIV 322

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
             V     + A   F  ML      T  T SSIL ACA+ A +  G ++H C     + G
Sbjct: 323 SYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVH-CLTAKTIYG 381

Query: 384 -DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            D+ V +AL+DMYAKCG I +AR +FD +  R+ V+WN++I G + HG   EAI++FN M
Sbjct: 382 QDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLM 441

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           +E K K D L+F  VL+AC + G ++ G++ F  M++ Y I P  EHY CMV L+GR+G 
Sbjct: 442 KETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGN 501

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L +A + I+ +  EP + +W ALLGAC  H ++EL  I+A+ + ELEP   A+++LL+++
Sbjct: 502 LDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNI 561

Query: 562 YANA 565
           YA A
Sbjct: 562 YARA 565



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 208/431 (48%), Gaps = 34/431 (7%)

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
           M+FDE+P+ N   ++ L   YA+     EA  +F  +H +G + N FV  +VLK    + 
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
               G  +H  VLK  +G++ F+ ++LID YS  G V  A++VFDE+  KD+V+   M++
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS---GFSK--SGDQVMVS-------- 300
            Y +    +EAL    ++     KPN  T+  ++    G     +G  V  S        
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 301 ------KLFQL----------MRAKGVEP--DVVSWTSVISGLVHNFCNDEAFDTFKEML 342
                  L +L           RA G  P  DV+ W+ +IS    +  +++A + F +M 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
                P   T SS+L A A   ++   K IHG A+  G+  D+ V +AL+  YAKCG I 
Sbjct: 241 RAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIE 300

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACC 461
           ++  LF+ +S+RN V+WN++I      G  + A+ LF N +  + +   ++++++L AC 
Sbjct: 301 QSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACA 360

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
            +  +ELG ++ + +  K            ++D+  + G + +A  M   +    D   W
Sbjct: 361 TLAALELGLQV-HCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLR-DKVSW 418

Query: 522 GALLGACKNHG 532
            A++     HG
Sbjct: 419 NAIICGYSMHG 429


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 278/514 (54%), Gaps = 43/514 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN--IHRWIA 149
           +ALQ G+++H    + GL+    ++T L+  Y +C +++ A+ LF+ I   +  I  W A
Sbjct: 121 QALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNA 180

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +  A++    H + +    +M   G+  N   + S+L   G  + +  G+ IH+  +++ 
Sbjct: 181 MIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNF 240

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F  +  + ++L+DMY+KC  +  A+K+F+ + +K+ V  +AM+ GYV     ++AL L +
Sbjct: 241 FFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYD 300

Query: 270 EI-------GTP-----------------RVKP------------NVVTWNTLISGFSKS 293
           ++        TP                 R K             +    N+LIS ++K 
Sbjct: 301 DMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKC 360

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G           M AK    D VS++++ISG V N   ++A   F++M S G  P   T+
Sbjct: 361 GIMDNAVGFLDEMIAK----DTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETM 416

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            ++LPAC+  A ++ G   HG  +V G   D  + +A++DMY+KCG I+ +R +FD+M  
Sbjct: 417 IALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQN 476

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           R+ ++WN+MI G   HG C EA+ LF +++    K D ++  AVL+AC H GLV  G+  
Sbjct: 477 RDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYW 536

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ M + + I PR  HY CMVDLL RAG L EAY  I+ M   P++ +WGALL AC+ H 
Sbjct: 537 FSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHK 596

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           NIE+ E  +K +  L PE   N +L++++Y++ G
Sbjct: 597 NIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVG 630



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 247/527 (46%), Gaps = 82/527 (15%)

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
           AT+L  ++     I  AR +FD+IPK ++  W  +   YA  G  Q+++ ++  M   G+
Sbjct: 44  ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV 103

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
               F  P +LKAC  L  +  G  IH+         D +V ++L+ MY+KCG + +A+ 
Sbjct: 104 TPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQT 163

Query: 236 VFDEMV--EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           +F+ +   ++DIVA NAM++ +    L  + ++ V ++    V PN  T  +++    ++
Sbjct: 164 LFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQA 223

Query: 294 G------------------DQV--------MVSKLFQLMRAKGV-----EPDVVSWTSVI 322
                              D V        M +K   L  A+ +     + + V W+++I
Sbjct: 224 NALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMI 283

Query: 323 SGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
            G V +    +A   + +ML   G  PT AT++++L ACA   +++RGK++H   I  G+
Sbjct: 284 GGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGM 343

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           + D  V ++L+ MYAKCG +  A    D+M  ++TV+++++I GC  +GY ++A+ +F Q
Sbjct: 344 DLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQ 403

Query: 442 MEERKKLDHL-SFTAVLTACCHV-----------------------------------GL 465
           M+      +L +  A+L AC H+                                   G 
Sbjct: 404 MQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGK 463

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWG 522
           + + + +F+ MQ +  I   T     M+   G  G   EA   ++ ++ +  +PD     
Sbjct: 464 ITISREIFDRMQNRDIISWNT-----MIIGYGIHGLCVEALSLFQELQALGLKPDDVTLI 518

Query: 523 ALLGACKNHGNIELAEIAAKHLSE---LEPESAANNMLLTDLYANAG 566
           A+L AC + G +   +     +S+   ++P   A+ + + DL A AG
Sbjct: 519 AVLSACSHSGLVTEGKYWFSSMSQNFNIKPR-MAHYICMVDLLARAG 564



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 151/308 (49%), Gaps = 4/308 (1%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +PA  +  +    +   L+ GK LH  +I SG+   T +   LI+ Y +C  + +A    
Sbjct: 311 TPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFL 370

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           DE+   +   + A+     + GY ++A+ +F +M   G+   +  + ++L AC HL+ + 
Sbjct: 371 DEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQ 430

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G   H   +   F  D  + +++IDMYSKCG +  ++++FD M  +DI++ N M+ GY 
Sbjct: 431 HGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYG 490

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDV 315
             GL  EAL+L +E+    +KP+ VT   ++S  S SG        F  M     ++P +
Sbjct: 491 IHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRM 550

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
             +  ++  L      DEA+   + M    F P      ++L AC +  N+  G+++   
Sbjct: 551 AHYICMVDLLARAGNLDEAYTFIQRM---PFVPNVRIWGALLAACRTHKNIEMGEQVSKK 607

Query: 376 AIVMGVEG 383
             ++G EG
Sbjct: 608 IQLLGPEG 615


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 268/514 (52%), Gaps = 49/514 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L SG+ LH  ++  G+     + + L + Y++C +   A  LF E+P+ ++  W +L G 
Sbjct: 236 LNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGI 295

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y RRG   EA+ +F +M   GL+ +  ++  VL   G+  ++  G+  H+++ K +FG  
Sbjct: 296 YCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDS 355

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + ++LI MY K   V+ A +VF  + ++D  + N MV GY + G   + L L  E+  
Sbjct: 356 VLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREM-- 413

Query: 274 PRVKPNVVTW-----------------------------------------NTLISGFSK 292
            +++     W                                         N LI  + +
Sbjct: 414 -QLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGR 472

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            G      K+F L + KG   DVV+W ++IS   H   ++ A   + +ML +G  P S T
Sbjct: 473 CGKFDHACKIFGLAKLKG---DVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTT 529

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           + +++ ACA+   + RG++IH     MG + D+ + +AL+DMYAKCG +  AR +FD M 
Sbjct: 530 LITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSML 589

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
           + + V WN MI G   HG   +A+ELF +ME    K + ++F A+L+A CH GL+E G++
Sbjct: 590 QHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRK 649

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
           +F  M  KY + P  +HYACMVDLLG++G L EA +M+  M  EPD  +WG LL ACK H
Sbjct: 650 VFTRMG-KYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLH 708

Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            N E+    AK     +PE+    +L+++ Y  A
Sbjct: 709 DNFEMGLRIAKKAFASDPENEGYYILISNSYGGA 742



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 128/509 (25%), Positives = 242/509 (47%), Gaps = 58/509 (11%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGL----ARLTQIATKLITFYTECQNIHHA 132
           +P A S   E+     AL  G  +HA  +  GL         +A+ L+  Y  C N+  A
Sbjct: 114 APLAASASAEL----GALGVGAAVHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDA 169

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQG---LKQNIFVIPSVLKA 188
             +F+E+P+ ++  W A+     R G   E +    EM  + G   ++ N   + S L+A
Sbjct: 170 VKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEA 229

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           CG L ++ +G  +H  V+K   G    V+S+L  MYSKC S E A  +F E+ EKD+V+ 
Sbjct: 230 CGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSW 289

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS--------------- 293
            +++  Y +RGL TEA+ L +++    ++P+ +  + ++SG   +               
Sbjct: 290 TSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITK 349

Query: 294 ---GDQVMVSKL-------FQLMRAKGV------EPDVVSWTSVISGLVHNFCNDEAFDT 337
              GD V++          F+++ + G       + D  SW  ++ G     C+ +  + 
Sbjct: 350 RNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLEL 409

Query: 338 FKEMLSQG----FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           ++EM  +     +C   + +S+I  +C+  A +R G+  H  +I   ++ D  V + L+ 
Sbjct: 410 YREMQLRDKYEFWCVADSLVSAI-SSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIG 468

Query: 394 MYAKCGFISEARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
           MY +CG    A  +F     + + VTWN++I   A+ G+ + A+ L++QM  E    +  
Sbjct: 469 MYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNST 528

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           +   V++AC ++  +E G+++ + ++E    Y +   T     ++D+  + G+L  A  +
Sbjct: 529 TLITVISACANLVALERGEKIHSYVKEMGWDYDVSINT----ALIDMYAKCGQLGIARRI 584

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELA 537
             +M  + D+  W  ++     HG  + A
Sbjct: 585 FDSM-LQHDVVAWNVMISGYGMHGEAKQA 612



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 214/501 (42%), Gaps = 54/501 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA  + SGL +   +A KL++ Y+       A + F   P+ +   W +L   +     
Sbjct: 32  VHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCASD 91

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF----GTDAF 215
              A++    M   G + + F  P    A   L  +G G  +H+  +++      G    
Sbjct: 92  FVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGDSVA 151

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI---- 271
           V SSL+ MY++CG+V  A KVF+EM E+D+VA  A++SG V+ G + E L  + E+    
Sbjct: 152 VASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLA 211

Query: 272 GTPRVKPNVVTWNTLISGFSKS---------------------GDQVMV-SKLFQL---- 305
           G   V+PN     T+ SG                         GD  MV S LF +    
Sbjct: 212 GDGSVRPNS---RTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKC 268

Query: 306 --------MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
                   +  +  E DVVSWTS+I          EA + F++M+  G  P    +S +L
Sbjct: 269 YSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVL 328

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
               +  N+  GK  H           + + +AL+ MY K   +  A  +F  + +R+  
Sbjct: 329 SGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDAD 388

Query: 418 TWNSMIFGCANHGYCD-EAIELFNQMEERKKLDHL----SFTAVLTACCHVGLVELGQRL 472
           +WN M+ G    G CD + +EL+ +M+ R K +      S  + +++C  +  + LG R 
Sbjct: 389 SWNLMVVGYCKAG-CDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLG-RS 446

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG--ACKN 530
            +    K+ +   +     ++ + GR G+   A ++      + D+  W  L+   A   
Sbjct: 447 AHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLG 506

Query: 531 HGNIELAEIAAKHLSELEPES 551
           H N  ++      +  L P S
Sbjct: 507 HSNAAMSLYDQMLIEGLTPNS 527



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 9/237 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H+ +   G      I T LI  Y +C  +  AR +FD + + ++  W  +  
Sbjct: 542 ALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMIS 601

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G  ++A+ +F +M    +K N     ++L A  H   +  G K+ + + K+S   
Sbjct: 602 GYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGKYSLEP 661

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +    + ++D+  K G +++A+ +   M +E D      ++S           L + ++ 
Sbjct: 662 NLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKA 721

Query: 272 GTPRVKPNVVTWNTLIS---GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                 P    +  LIS   G +K  D+  + KL + M+  GV+   V W++V  G+
Sbjct: 722 FAS--DPENEGYYILISNSYGGAKKWDE--IEKLRETMKNLGVQKG-VGWSAVDYGV 773


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 287/556 (51%), Gaps = 68/556 (12%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           +AY   I+        + GK LHA+L++S +     + +KLI+FY++  +I  A  +F +
Sbjct: 4   SAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGK 63

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEM---HIQGLKQNIFVIPSVLKACGHL-SD 194
           IP+ NI  W AL  +Y     H + + +F  +   +   +K + F +   LKA   L S+
Sbjct: 64  IPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSN 123

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
            G  +++HS +L+     D FVV++LI  YS+C  +  A+ +FD M E+D V+ NAM++G
Sbjct: 124 SGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAG 183

Query: 255 YVQRGLATEALNLVE-EIGTPRVKPNVVT------------------------------- 282
           Y Q G   E   L    + +  VKPN +T                               
Sbjct: 184 YSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKM 243

Query: 283 ----WNTLISGFSKSGDQVMVSKLFQLMRAK-GV-------------------------- 311
               WN +I  ++K G      +LF+ M  K G+                          
Sbjct: 244 DVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQE 303

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
            P + +W +VISGLV N   + A D F+ M S G  P + T++SILP  +  + ++ GKE
Sbjct: 304 RPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKE 363

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           IHG AI    + +++V +A++D YAKCG++  A+ +FD++  R+ + W S+I   A HG 
Sbjct: 364 IHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGD 423

Query: 432 CDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
            + A+ LF +M     + D ++FT+VL AC H G ++   ++FN++  +Y I P  EHYA
Sbjct: 424 ANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYA 483

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMV +L RAG+L++A E I  M  EP   VWGALL      G++EL +     L E+EPE
Sbjct: 484 CMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPE 543

Query: 551 SAANNMLLTDLYANAG 566
           +  N +++ +LY+ +G
Sbjct: 544 NTGNYVIMANLYSQSG 559



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H   I +   R   +AT +I  Y +C  +H A+++FD+I   ++  W ++  A
Sbjct: 358 LKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISA 417

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA  G    A+++F+EM   G++ +     SVL AC H  ++    KI +++L   +G  
Sbjct: 418 YAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPE-YGIQ 476

Query: 214 AFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALNL 267
             V   + ++ + S+ G +  A +   +M +E       A+++G    G   L     + 
Sbjct: 477 PLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDR 536

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
           + EI  P    N V    L S   +  D   +  L + +R K +  +  SW    SG + 
Sbjct: 537 LFEI-EPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGN--SWIET-SGGMQ 592

Query: 328 NFC 330
            FC
Sbjct: 593 RFC 595


>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g20730-like [Brachypodium distachyon]
          Length = 558

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 172/505 (34%), Positives = 282/505 (55%), Gaps = 33/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            + G+ +H Q+I S       ++TKL+ FY +  ++  AR +FD +P  ++  W A+   
Sbjct: 27  FRRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSG 86

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y+R G  +EA+ +F  M   G++ N F   SV  AC     + +GE++H+ V K  F  D
Sbjct: 87  YSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGD 146

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-- 271
            FV S+L+DM+ +CGSV  A ++F EM  KD+VA NA++ G V+R    +AL L+  +  
Sbjct: 147 VFVQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVERAQYGDALGLLPSMLR 206

Query: 272 -----------------GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-LMRAKGV-- 311
                            G   V  NV   +T I      G++V++  +     + +G+  
Sbjct: 207 GAMLPDHFTFGSALKACGAVSVLANVELIHTCIIKLGYWGEKVVIGSIIDAYAKCRGLSS 266

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDE-AFDTFKEMLSQGFCPTSATISSILPACA 361
                    EPD+VS T++ISG   +  + E A + F ++  +G       +SS+L  CA
Sbjct: 267 ARLIYDSICEPDLVSSTALISGYSMDRNHSEDAMELFCKIHRKGLRIDGVLLSSLLGLCA 326

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A++R G +IH          D+ + +A+VDMYAK G  ++AR  FD+M  RN V+W S
Sbjct: 327 NVASLRFGTQIHAYMCKRQPMTDVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTS 386

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I  C  +G+ ++A+ LF++M E+  K + ++F ++L+AC H GL   G   F  M  KY
Sbjct: 387 LITACGKNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSACGHSGLTSKGMEYFTSMMSKY 446

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I PR EHY+  +DLL R G+L +A+++++ +  EP+  ++GA+LGACK HG++ L E A
Sbjct: 447 GIDPRAEHYSSAIDLLARGGQLKDAWKLVQNIDIEPNSSMFGAMLGACKTHGSMPLGETA 506

Query: 541 AKHLSELEPESAANNMLLTDLYANA 565
           AK+L  + PES+ +  +L ++YA +
Sbjct: 507 AKNLFTIAPESSVHYAVLANMYAES 531



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 168/332 (50%), Gaps = 10/332 (3%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA-R 156
           +++H  +I  G      +   +I  Y +C+ +  AR+++D I + ++    AL   Y+  
Sbjct: 233 ELIHTCIIKLGYWGEKVVIGSIIDAYAKCRGLSSARLIYDSICEPDLVSSTALISGYSMD 292

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           R + ++A+ +F ++H +GL+ +  ++ S+L  C +++ +  G +IH+ + K    TD  +
Sbjct: 293 RNHSEDAMELFCKIHRKGLRIDGVLLSSLLGLCANVASLRFGTQIHAYMCKRQPMTDVAL 352

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++++DMY+K G    A++ FDEM  +++V+  ++++   + G   +A++L + +    V
Sbjct: 353 DNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTSLITACGKNGFGEDAVSLFDRMVEDGV 412

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAF 335
           KPN VT+ +L+S    SG      + F  M +K G++P    ++S I  L       +  
Sbjct: 413 KPNDVTFLSLLSACGHSGLTSKGMEYFTSMMSKYGIDPRAEHYSSAIDLLAR---GGQLK 469

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           D +K + +    P S+   ++L AC +  +M  G+        +  E  +H  + L +MY
Sbjct: 470 DAWKLVQNIDIEPNSSMFGAMLGACKTHGSMPLGETAAKNLFTIAPESSVHY-AVLANMY 528

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           A+     +A+     M+E    T    + GC+
Sbjct: 529 AESSLWEDAQRTRKLMAE----TSGGKVAGCS 556



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L +C S    RRG+ +H   I      DLH+ + LV  YAK G ++ AR +FD M  R
Sbjct: 18  SLLQSCMSC--FRRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHR 75

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V+W +M+ G + +G   EA++LF  M     + +  ++ +V +AC   G V  G+++ 
Sbjct: 76  SVVSWTAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVH 135

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
             +  K + +      + ++D+  R G + +A ++   M  + D+  W ALL
Sbjct: 136 ACVA-KGRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERK-DVVAWNALL 185


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 265/472 (56%), Gaps = 13/472 (2%)

Query: 100 LHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           +H   I SG+   +    KLI     +    + +AR L    P+ +   +  L   Y+  
Sbjct: 191 IHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSES 250

Query: 158 GYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                +V VF EM  +G +  + F    V+KA  +   + TG ++H   LKH   +  FV
Sbjct: 251 DEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFV 310

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LI MY +CG V  A+KVFDEM + ++VA NA+V+   +    + A  + +++    +
Sbjct: 311 ATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKM----L 366

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             N  +WN +++G+ K+G+     ++F  M  +    D VSW+++I G  HN   +E+F 
Sbjct: 367 VRNHTSWNVMLAGYIKAGELECAKRIFSEMPHR----DDVSWSTMIVGFSHNGSFNESFS 422

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F+E+L     P   +++ +L AC+ +     GK +HG     G    + V +AL+DMY+
Sbjct: 423 YFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYS 482

Query: 397 KCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFT 454
           +CG +  AR +F+ M E R+ V+W SMI G A HG+ +EAI +FN+M E   + D +SF 
Sbjct: 483 RCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFI 542

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           ++L AC H GL++ G+  F+ M+  Y I P  EHY CMVDL GR+G+L +AY  I  M  
Sbjct: 543 SLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPI 602

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            P   VW  LLGAC +HGNIELAE   + L+EL+P ++ + +LL+++YA AG
Sbjct: 603 PPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAG 654



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 166/391 (42%), Gaps = 83/391 (21%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R+L++G  +H Q +  GL     +AT LI  Y EC  +  AR +FDE+P+ N+  W A+ 
Sbjct: 287 RSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVV 346

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A  R      A  +F +M                                 LV  H+  
Sbjct: 347 TACFRGNDVSGAREIFDKM---------------------------------LVRNHT-- 371

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
                 + ++  Y K G +E AK++F EM  +D V+ + M+ G+   G   E+ +   E+
Sbjct: 372 ----SWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL 427

Query: 272 GTPRVKPNVV------------------------------TW-----NTLISGFSKSGDQ 296
               ++PN V                              +W     N LI  +S+ G+ 
Sbjct: 428 LRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNV 487

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
            M   +F+ M+ K     +VSWTS+I+GL  +   +EA   F EM   G  P   +  S+
Sbjct: 488 PMARLVFEGMQEKR---SIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISL 544

Query: 357 LPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           L AC+ A  ++ G+        V  +E  +     +VD+Y + G + +A +   +M    
Sbjct: 545 LYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPP 604

Query: 416 T-VTWNSMIFGCANHGYCDEAIELFNQMEER 445
           T + W +++  C++HG     IEL  Q+++R
Sbjct: 605 TAIVWRTLLGACSSHG----NIELAEQVKQR 631



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 138/343 (40%), Gaps = 80/343 (23%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH   +K    TD++ +  LI                          ++  +S      
Sbjct: 190 QIHGFFIKSGVDTDSYFIGKLI--------------------------LHCAIS------ 217

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
             ++AL     +     +P+   +NTL+ G+S+S                  EP      
Sbjct: 218 -ISDALPYARRLLLCFPEPDAFMFNTLVRGYSESD-----------------EP------ 253

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFC-PTSATISSILPACASAANMRRGKEIHGCAIV 378
                  HN     +   F EM+ +GF  P S + + ++ A A+  ++R G ++H  A+ 
Sbjct: 254 -------HN-----SVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALK 301

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
            G++  L V + L+ MY +CG +  AR +FD+M + N V WN+++  C        A E+
Sbjct: 302 HGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREI 361

Query: 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           F++M  R   +H S+  +L      G +E  +R+F+ M  +  +      ++ M+     
Sbjct: 362 FDKMLVR---NHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDV-----SWSTMIVGFSH 413

Query: 499 AGRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIELAE 538
            G   E++   + +      P+      +L AC   G  E  +
Sbjct: 414 NGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGK 456


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 272/494 (55%), Gaps = 48/494 (9%)

Query: 115 IATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           +   LI  + + +N   +A  +FD++ + N+  W  +     + G+ +EA+  F +M + 
Sbjct: 204 VGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLS 263

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---GSV 230
           G + + F + SV  AC  L ++  G+++HS  ++     D  V  SL+DMY+KC   GSV
Sbjct: 264 GFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSV 321

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQR-GLATEALNLVEEIGTP-RVKPNVVTW----- 283
           +  +KVFD M +  +++  A+++GY++   LATEA+NL  E+ T   V+PN  T+     
Sbjct: 322 DDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFK 381

Query: 284 ------------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                                         N++IS F KS       + F+ +     E 
Sbjct: 382 ACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLS----EK 437

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           ++VS+ + + G   N   ++AF    E+  +    ++ T +S+L   A+  ++R+G++IH
Sbjct: 438 NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIH 497

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
              + +G+  +  V +AL+ MY+KCG I  A  +F+ M  RN ++W SMI G A HG+  
Sbjct: 498 SQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAI 557

Query: 434 EAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
             +E FNQM EE  K + +++ A+L+AC HVGLV  G R FN M E +KI P+ EHYACM
Sbjct: 558 RVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACM 617

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           VDLL RAG L +A+E I TM  + D+ VW   LGAC+ H N EL ++AA+ + EL+P   
Sbjct: 618 VDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEP 677

Query: 553 ANNMLLTDLYANAG 566
           A  + L+++YA AG
Sbjct: 678 AAYIQLSNIYACAG 691



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 236/500 (47%), Gaps = 48/500 (9%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           +    +S  ++  IR R  + GK++HA+LI   +   + +   LI+ Y++  +   A  +
Sbjct: 60  MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119

Query: 136 FDEI---PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           F+ +    K ++  W A+   Y   G   +A+ VF E    GL  N +   +V++AC + 
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNS 179

Query: 193 SDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEKDIVAMNA 250
             +G G      ++K   F +D  V  SLIDM+ K   S E A KVFD+M E ++V    
Sbjct: 180 DFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTL 239

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----------------KSG 294
           M++  +Q G   EA+    ++     + +  T +++ S  +                +SG
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG 299

Query: 295 --DQVMVS--KLFQLMRAKGVEPD------------VVSWTSVISGLVHNFCN--DEAFD 336
             D V  S   ++    A G   D            V+SWT++I+G + N CN   EA +
Sbjct: 300 LVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN-CNLATEAIN 358

Query: 337 TFKEMLSQGFC-PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
            F EM++QG   P   T SS   AC + ++ R GK++ G A   G+  +  V ++++ M+
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMF 418

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
            K   + +A+  F+ +SE+N V++N+ + G   +   ++A +L +++ ER+  +   +F 
Sbjct: 419 VKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFA 478

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTM 512
           ++L+   +VG +  G+++ + +    K+        C  ++ +  + G +  A  +   M
Sbjct: 479 SLLSGVANVGSIRKGEQIHSQV---VKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM 535

Query: 513 STEPDLFVWGALLGACKNHG 532
               ++  W +++     HG
Sbjct: 536 ENR-NVISWTSMITGFAKHG 554



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 168/378 (44%), Gaps = 48/378 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIAL 150
           L  GK LH+  I SGL  +  +   L+  Y +C    ++   R +FD +   ++  W AL
Sbjct: 285 LSLGKQLHSWAIRSGL--VDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342

Query: 151 TGAYARR-GYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
              Y +      EA+ +F EM  QG ++ N F   S  KACG+LSD   G+++     K 
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR 402

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
              +++ V +S+I M+ K   +E A++ F+ + EK++V+ N  + G  +     +A  L+
Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLL 462

Query: 269 EEIGTPRVKPNVVTWNTLISG-----------------------------------FSKS 293
            EI    +  +  T+ +L+SG                                   +SK 
Sbjct: 463 SEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKC 522

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G     S++F  M  +    +V+SWTS+I+G   +       +TF +M+ +G  P   T 
Sbjct: 523 GSIDTASRVFNFMENR----NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578

Query: 354 SSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
            +IL AC+    +  G +  +       ++  +   + +VD+  + G +++A    + M 
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 413 -ERNTVTWNSMIFGCANH 429
            + + + W + +  C  H
Sbjct: 639 FQADVLVWRTFLGACRVH 656



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 154/331 (46%), Gaps = 23/331 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +  Q    GLA  + +A  +I+ + +   +  A+  F+ + + N+  +        R
Sbjct: 392 GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               ++A  +  E+  + L  + F   S+L    ++  I  GE+IHS V+K     +  V
Sbjct: 452 NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPV 511

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LI MYSKCGS++ A +VF+ M  +++++  +M++G+ + G A   L    ++    V
Sbjct: 512 CNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGV 571

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQ----LMRAKGVEPDVVSWTSVISGLVHNFCND 332
           KPN VT+  ++S  S  G   +VS+ ++    +     ++P +  +  ++  L       
Sbjct: 572 KPNEVTYVAILSACSHVG---LVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLT 628

Query: 333 EAFDTFKEMLSQGFCPTSATI---SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           +AF+    M      P  A +    + L AC   +N   GK     A    +E D +  +
Sbjct: 629 DAFEFINTM------PFQADVLVWRTFLGACRVHSNTELGK----LAARKILELDPNEPA 678

Query: 390 A---LVDMYAKCGFISEARTLFDKMSERNTV 417
           A   L ++YA  G   E+  +  KM ERN V
Sbjct: 679 AYIQLSNIYACAGKWEESTEMRRKMKERNLV 709



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 75/149 (50%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G+ +H+Q++  GL+    +   LI+ Y++C +I  A  +F+ +   N+  W ++  
Sbjct: 489 SIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMIT 548

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A+ G+    +  F++M  +G+K N     ++L AC H+  +  G +  +S+   H   
Sbjct: 549 GFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIK 608

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                 + ++D+  + G +  A +  + M
Sbjct: 609 PKMEHYACMVDLLCRAGLLTDAFEFINTM 637


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 169/475 (35%), Positives = 265/475 (55%), Gaps = 45/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNI--HHARMLFDEIPKTNIHRWIALTGAYA 155
           K +HA +I +GL++ + + TKLI   T+       +  ++F ++   N   W A+   YA
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFGTDA 214
            +G   E+   +  M   G+    F   ++ KACG   ++  G+++H+  +L   F +D 
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           +V +S+ID+Y KCG +  A+KVFDEM E+D                              
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERD------------------------------ 208

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                VV+W  LI  ++K GD    S LF  + +K    D+V+WT++++G   N    EA
Sbjct: 209 -----VVSWTELIVAYAKYGDMESASGLFDDLPSK----DMVAWTAMVTGYAQNGRPKEA 259

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA--IVMGVEGDLHVRSALV 392
            + F++M   G      T++ ++ ACA    ++    I   A     G  G++ V SAL+
Sbjct: 260 LEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALI 319

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           DMY+KCG   EA  +F+ M ERN  +++SMI G A HG    A++LF+ M + + + + +
Sbjct: 320 DMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKV 379

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  +L+AC H GLVE G++LF  M++ + + P  +HYACMVDLLGRAG L EA +++KT
Sbjct: 380 TFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKT 439

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  EP+  VWGALLGAC+ HGN ++A+IAA  L +LEP    N +LL+++YA+AG
Sbjct: 440 MPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAG 494


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 267/498 (53%), Gaps = 41/498 (8%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           +R   L    Y+  +    +  +L  GK LHAQ+I S       +A+ ++  Y +C    
Sbjct: 287 NRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFK 346

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            AR +F  +   N   W  L G + + G   E++ +F++M  + +  + F + +++  C 
Sbjct: 347 EARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCS 406

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
           +  D+    ++HSL LK        + +SLI MY+KCG+++ A+ +F  M E+DIV+   
Sbjct: 407 NRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTG 466

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-LMRAK 309
           M++ Y Q G   +A    + + T     NV+TWN ++  + + G +    K++  ++  K
Sbjct: 467 MLTAYSQVGNIGKAREFFDGMSTR----NVITWNAMLGAYIQHGAEEDGLKMYSAMLTEK 522

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
            V PD V++ ++  G                                   CA     + G
Sbjct: 523 DVIPDWVTYVTLFRG-----------------------------------CADMGANKLG 547

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
            +I G  + +G+  D  V +A++ MY+KCG ISEAR +FD +S ++ V+WN+MI G + H
Sbjct: 548 DQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQH 607

Query: 430 GYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G   +AIE+F+ M ++  K D++S+ AVL++C H GLV+ G+  F+M++  + + P  EH
Sbjct: 608 GMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEH 667

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           ++CMVDLL RAG L EA  +I  M  +P   VWGALL ACK HGN ELAE+AAKHL +L+
Sbjct: 668 FSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLD 727

Query: 549 PESAANNMLLTDLYANAG 566
              +   MLL  +YA+AG
Sbjct: 728 SPDSGGYMLLAKIYADAG 745



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 195/449 (43%), Gaps = 72/449 (16%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-Q 177
           ++  Y +  ++  A  LF  +P+ ++  W  L   Y + G   +A+  F  M   G    
Sbjct: 101 MMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLP 160

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N F     +K+CG L       ++  L+ K  F  D  V + ++DM+ +CG+V+ A K F
Sbjct: 161 NAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQF 220

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            ++    +   N+M++GY +      AL L E +     + +VV+WN ++S  S+SG   
Sbjct: 221 SQIERPTVFCRNSMLAGYAKSYGVDHALELFESM----PERDVVSWNMMVSALSQSG--- 273

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
                    RA+                       EA     +M ++G    S T +S L
Sbjct: 274 ---------RAR-----------------------EALSVAVDMHNRGVRLDSTTYTSSL 301

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACA  +++  GK++H   I      D +V SA+V++YAKCG   EAR +F  + +RNTV
Sbjct: 302 TACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTV 361

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACC--------------- 461
           +W  +I G   +G   E++ELFNQM  E   +D  +   +++ C                
Sbjct: 362 SWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLS 421

Query: 462 ----HVGLVELGQRLFNM------MQEKYKIMPRTEH-----YACMVDLLGRAGRLAEAY 506
               H   V +   L +M      +Q    I    E      +  M+    + G + +A 
Sbjct: 422 LKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAR 481

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           E    MST  ++  W A+LGA   HG  E
Sbjct: 482 EFFDGMSTR-NVITWNAMLGAYIQHGAEE 509



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 159/386 (41%), Gaps = 77/386 (19%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF-DEM 240
           +   L++CG    +     +H  ++     +  F+ ++L+  Y  CG++  A+ +   ++
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
            E +++  N M++GY + G  ++A    EE+     + +V +WNTL+SG+ +SG  +   
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDA----EELFGRMPRRDVTSWNTLMSGYYQSGRFLDAM 146

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           + F  MR  G                         D+          P + T    + +C
Sbjct: 147 ESFVSMRRSG-------------------------DSL---------PNAFTFGCAMKSC 172

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF-------------------- 400
            +        ++ G     G +GD  V + +VDM+ +CG                     
Sbjct: 173 GALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRN 232

Query: 401 -----------ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
                      +  A  LF+ M ER+ V+WN M+   +  G   EA+ +   M  R  +L
Sbjct: 233 SMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRL 292

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAY 506
           D  ++T+ LTAC  +  +  G++L     +  + +P  + Y  + MV+L  + G   EA 
Sbjct: 293 DSTTYTSSLTACAKLSSLGWGKQLH---AQVIRSLPCIDPYVASAMVELYAKCGCFKEAR 349

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHG 532
            +  ++  + +   W  L+G    +G
Sbjct: 350 RVFSSLR-DRNTVSWTVLIGGFLQYG 374



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 109/231 (47%), Gaps = 10/231 (4%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +    +  GL   T +   +IT Y++C  I  AR +FD + + ++  W A+   Y++
Sbjct: 547 GDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQ 606

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAF 215
            G  ++A+ +F +M  +G K +     +VL +C H   +  G+    ++ + H+      
Sbjct: 607 HGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLE 666

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             S ++D+ ++ G++ +AK + DEM  K      A V G +     T   N + E+    
Sbjct: 667 HFSCMVDLLARAGNLIEAKNLIDEMPMKP----TAEVWGALLSACKTHGNNELAELAAKH 722

Query: 276 V----KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           +     P+   +  L   ++ +G  V  +++ +LMR KG++ +   SW  V
Sbjct: 723 LFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEV 773


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 272/494 (55%), Gaps = 48/494 (9%)

Query: 115 IATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           +   LI  + + +N   +A  +FD++ + N+  W  +     + G+ +EA+  F +M + 
Sbjct: 204 VGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLS 263

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---GSV 230
           G + + F + SV  AC  L ++  G+++HS  ++     D  V  SL+DMY+KC   GSV
Sbjct: 264 GFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSV 321

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQR-GLATEALNLVEEIGTP-RVKPNVVTW----- 283
           +  +KVFD M +  +++  A+++GY++   LATEA+NL  E+ T   V+PN  T+     
Sbjct: 322 DDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFK 381

Query: 284 ------------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                                         N++IS F KS       + F+ +     E 
Sbjct: 382 ACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLS----EK 437

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           ++VS+ + + G   N   ++AF    E+  +    ++ T +S+L   A+  ++R+G++IH
Sbjct: 438 NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIH 497

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
              + +G+  +  V +AL+ MY+KCG I  A  +F+ M  RN ++W SMI G A HG+  
Sbjct: 498 SQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAI 557

Query: 434 EAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
             +E FNQM EE  K + +++ A+L+AC HVGLV  G R FN M E +KI P+ EHYACM
Sbjct: 558 RVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACM 617

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           VDLL RAG L +A+E I TM  + D+ VW   LGAC+ H N EL ++AA+ + EL+P   
Sbjct: 618 VDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEP 677

Query: 553 ANNMLLTDLYANAG 566
           A  + L+++YA AG
Sbjct: 678 AAYIQLSNIYACAG 691



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 236/500 (47%), Gaps = 48/500 (9%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           +    +S  ++  IR R  + GK++HA+LI   +   + +   LI+ Y++  +   A  +
Sbjct: 60  MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119

Query: 136 FDEIP---KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           F+ +    K ++  W A+   Y   G   +A+ VF E    GL  N +   +V++AC + 
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNS 179

Query: 193 SDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEKDIVAMNA 250
             +G G      ++K   F +D  V  SLIDM+ K   S E A KVFD+M E ++V    
Sbjct: 180 DFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTL 239

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----------------KSG 294
           M++  +Q G   EA+    ++     + +  T +++ S  +                +SG
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG 299

Query: 295 --DQVMVS--KLFQLMRAKGVEPD------------VVSWTSVISGLVHNFCN--DEAFD 336
             D V  S   ++    A G   D            V+SWT++I+G + N CN   EA +
Sbjct: 300 LVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN-CNLATEAIN 358

Query: 337 TFKEMLSQGFC-PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
            F EM++QG   P   T SS   AC + ++ R GK++ G A   G+  +  V ++++ M+
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMF 418

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
            K   + +A+  F+ +SE+N V++N+ + G   +   ++A +L +++ ER+  +   +F 
Sbjct: 419 VKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFA 478

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTM 512
           ++L+   +VG +  G+++ + +    K+        C  ++ +  + G +  A  +   M
Sbjct: 479 SLLSGVANVGSIRKGEQIHSQV---VKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM 535

Query: 513 STEPDLFVWGALLGACKNHG 532
               ++  W +++     HG
Sbjct: 536 ENR-NVISWTSMITGFAKHG 554



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 168/378 (44%), Gaps = 48/378 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIAL 150
           L  GK LH+  I SGL  +  +   L+  Y +C    ++   R +FD +   ++  W AL
Sbjct: 285 LSLGKQLHSWAIRSGL--VDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342

Query: 151 TGAYARR-GYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
              Y +      EA+ +F EM  QG ++ N F   S  KACG+LSD   G+++     K 
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR 402

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
              +++ V +S+I M+ K   +E A++ F+ + EK++V+ N  + G  +     +A  L+
Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLL 462

Query: 269 EEIGTPRVKPNVVTWNTLISG-----------------------------------FSKS 293
            EI    +  +  T+ +L+SG                                   +SK 
Sbjct: 463 SEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKC 522

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G     S++F  M  +    +V+SWTS+I+G   +       +TF +M+ +G  P   T 
Sbjct: 523 GSIDTASRVFNFMENR----NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578

Query: 354 SSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
            +IL AC+    +  G +  +       ++  +   + +VD+  + G +++A    + M 
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 413 -ERNTVTWNSMIFGCANH 429
            + + + W + +  C  H
Sbjct: 639 FQADVLVWRTFLGACRVH 656



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 154/331 (46%), Gaps = 23/331 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +  Q    GLA  + +A  +I+ + +   +  A+  F+ + + N+  +        R
Sbjct: 392 GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               ++A  +  E+  + L  + F   S+L    ++  I  GE+IHS V+K     +  V
Sbjct: 452 NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPV 511

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LI MYSKCGS++ A +VF+ M  +++++  +M++G+ + G A   L    ++    V
Sbjct: 512 CNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGV 571

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQ----LMRAKGVEPDVVSWTSVISGLVHNFCND 332
           KPN VT+  ++S  S  G   +VS+ ++    +     ++P +  +  ++  L       
Sbjct: 572 KPNEVTYVAILSACSHVG---LVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLT 628

Query: 333 EAFDTFKEMLSQGFCPTSATI---SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           +AF+    M      P  A +    + L AC   +N   GK     A    +E D +  +
Sbjct: 629 DAFEFINTM------PFQADVLVWRTFLGACRVHSNTELGK----LAARKILELDPNEPA 678

Query: 390 A---LVDMYAKCGFISEARTLFDKMSERNTV 417
           A   L ++YA  G   E+  +  KM ERN V
Sbjct: 679 AYIQLSNIYACAGKWEESTEMRRKMKERNLV 709



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 75/149 (50%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G+ +H+Q++  GL+    +   LI+ Y++C +I  A  +F+ +   N+  W ++  
Sbjct: 489 SIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMIT 548

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A+ G+    +  F++M  +G+K N     ++L AC H+  +  G +  +S+   H   
Sbjct: 549 GFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIK 608

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                 + ++D+  + G +  A +  + M
Sbjct: 609 PKMEHYACMVDLLCRAGLLTDAFEFINTM 637


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 270/505 (53%), Gaps = 32/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++G+I+H+  I  G      I+  L+  Y++C     A  +F  I   ++  W A+   
Sbjct: 346 LRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITC 405

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             ++G  +EA  VF  M   G+  N F + S++ A   L D+  GE IH+ V K+ F  D
Sbjct: 406 LDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYD 465

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L+ MY K GSV+   +VF+    +D+++ NA++SG+         L +  ++  
Sbjct: 466 NTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLA 525

Query: 274 PRVKPNVVTWNTLISGFSKSGD---------QVMVSKL---------FQLMRAKG----- 310
               PN+ T+ +++   S   D         Q++ + L            M AK      
Sbjct: 526 EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLED 585

Query: 311 --------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                   ++ D+ +WT +++G   +   ++A   F +M  +G  P   T++S L  C+ 
Sbjct: 586 AETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSR 645

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A +  G+++H  AI  G  GD+ V SALVDMYAKCG + +A  +FD +  R+TV+WN++
Sbjct: 646 IATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTI 705

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G + HG   +A++ F  M +E    D ++F  VL+AC H+GL+E G++ FN + + Y 
Sbjct: 706 ICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYG 765

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  EHYACMVD+LGRAG+  E    I+ M    ++ +W  +LGACK HGNIE  E AA
Sbjct: 766 ITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAA 825

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
             L ELEPE  +N +LL++++A  G
Sbjct: 826 MKLFELEPEIDSNYILLSNMFAAKG 850



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 242/494 (48%), Gaps = 37/494 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +H Q+I SG+   + +   L+  Y +C + ++A  +F EIP+ ++  W AL   
Sbjct: 144 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 203

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +   GY   AV +F EM  +G++ N F   + LKAC    D+  G+++H+  +K    +D
Sbjct: 204 FVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSD 263

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV S+L+D+Y+KCG +  A++VF  M +++ V+ NA+++G+ Q G A + LNL   +  
Sbjct: 264 LFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTG 323

Query: 274 PRVKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV--- 311
             +  +  T +T++ G + SG                   D+ +   L  +    G+   
Sbjct: 324 SEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGD 383

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    +PDVVSW+++I+ L     + EA + FK M   G  P   T++S++ A   
Sbjct: 384 ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             ++  G+ IH C    G E D  V +ALV MY K G + +   +F+  + R+ ++WN++
Sbjct: 444 LGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNAL 503

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           + G  ++  CD  + +FNQM  E    +  +F ++L +C  +  V+LG+++   +  K  
Sbjct: 504 LSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIV-KNS 562

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           +         +VD+  +  R  E  E I     + DLF W  ++      G     E A 
Sbjct: 563 LDGNDFVGTALVDMYAK-NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQ---GEKAV 618

Query: 542 KHLSELEPESAANN 555
           K   +++ E    N
Sbjct: 619 KCFIQMQREGVKPN 632



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 238/519 (45%), Gaps = 68/519 (13%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +HA+ I  G      + + L+  Y +C  +  A  +F  +PK N   W AL   
Sbjct: 245 LEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNG 304

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A+ G  ++ + +F  M    +  + F + +VLK C +  ++  G+ +HSL ++     D
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELD 364

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F+   L+DMYSKCG    A KVF  + + D+V+ +A+++   Q+G + EA  + + +  
Sbjct: 365 EFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRH 424

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE--------------------- 312
             V PN  T  +L+S  +  GD      +   +   G E                     
Sbjct: 425 SGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQD 484

Query: 313 ----------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                      D++SW +++SG   N   D     F +ML++GF P   T  SIL +C+S
Sbjct: 485 GCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSS 544

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            +++  GK++H   +   ++G+  V +ALVDMYAK  F+ +A T+F+++ +R+   W  +
Sbjct: 545 LSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVI 604

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNM------ 475
           + G A  G  ++A++ F QM+ E  K +  +  + L+ C  +  ++ G++L +M      
Sbjct: 605 VAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQ 664

Query: 476 ---------MQEKYKIMPRTEHYACMVDLL------------------GRAGRLAEAYEM 508
                    + + Y      E    + D L                  G+ G+  +A+E 
Sbjct: 665 SGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEA 724

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           +    T PD   +  +L AC + G   L E   KH + L
Sbjct: 725 MLDEGTVPDEVTFIGVLSACSHMG---LIEEGKKHFNSL 760



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 180/377 (47%), Gaps = 42/377 (11%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +L+ C    D+  G+ IH  V+K     D+ + +SL+++Y+KCGS   A KVF E+ E+D
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT------------------- 285
           +V+  A+++G+V  G  + A+NL  E+    V+ N  T+ T                   
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 286 ----------------LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                           L+  ++K G+ V+  ++F  M  +    + VSW ++++G     
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQ----NAVSWNALLNGFAQMG 309

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             ++  + F  M       +  T+S++L  CA++ N+R G+ +H  AI +G E D  +  
Sbjct: 310 DAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISC 369

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL- 448
            LVDMY+KCG   +A  +F ++ + + V+W+++I      G   EA E+F +M     + 
Sbjct: 370 CLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIP 429

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           +  +  ++++A   +G +  G+ +   +  KY           +V +  + G + +   +
Sbjct: 430 NQFTLASLVSAATDLGDLYYGESIHACVC-KYGFEYDNTVCNALVTMYMKIGSVQDGCRV 488

Query: 509 IKTMSTEPDLFVWGALL 525
            +  +T  DL  W ALL
Sbjct: 489 FEA-TTNRDLISWNALL 504



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           S +L  CAS  ++  GK IHG  I  G+  D H+ ++LV++YAKCG  + A  +F ++ E
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           R+ V+W ++I G    GY   A+ LF +M  E  + +  ++   L AC     +E G+++
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 473 FNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
                E  K+   ++ +  + +VDL  + G +  A  +   M  + +   W ALL     
Sbjct: 252 H---AEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQ-NAVSWNALLNGFAQ 307

Query: 531 HGNIE 535
            G+ E
Sbjct: 308 MGDAE 312



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 27/281 (9%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   L SG+ LH+  I +G +    +A+ L+  Y +C  +  A ++FD +   +   W  
Sbjct: 645 RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNT 704

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y++ G   +A+  F  M  +G   +      VL AC H+  I  G+K H   L   
Sbjct: 705 IICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK-HFNSLSKI 763

Query: 210 FGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE---- 263
           +G    +   + ++D+  + G   + +   +EM     V +   V G  +     E    
Sbjct: 764 YGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGER 823

Query: 264 -ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
            A+ L E    P +  N +  + +   F+  G    V+ +  LM  +GV+ +   SW  V
Sbjct: 824 AAMKLFEL--EPEIDSNYILLSNM---FAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEV 878

Query: 322 ISGLVHNFCNDEAF------------DTFKEMLSQGFCPTS 350
            +G VH F + +              D  ++++S G+ P +
Sbjct: 879 -NGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNT 918


>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/428 (36%), Positives = 251/428 (58%), Gaps = 6/428 (1%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           +++ W ++   + ++G   EA  +  +M I G++ N   I S   AC  +  +  G +IH
Sbjct: 319 DVYTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASAASACASVKSLSMGSEIH 378

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
           S+ +K S   D  + +SLIDMY+K G +E A+ +FD M+E+D+ + N+++ GY Q G   
Sbjct: 379 SIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDVYSWNSIIGGYCQAGFCG 438

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSV 321
           +A  L  ++      PNVVTWN +I+GF ++GD+     LF  +   G ++P+V SW S+
Sbjct: 439 KAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLRIEKDGKIKPNVASWNSL 498

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ISG + N   D+A   F++M      P   T+ +ILPAC +    ++ KEIH CA    +
Sbjct: 499 ISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPACTNLVAAKKVKEIHCCATRRNL 558

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             +L V +  +D YAK G I  +R +FD +S ++ ++WNS++ G   HG  + A++LF+Q
Sbjct: 559 VSELSVSNTFIDSYAKSGNIMYSRKVFDGLSPKDIISWNSLLSGYVLHGCSESALDLFDQ 618

Query: 442 MEERKKLDH---LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           M  RK   H   ++ T++++A  H  +V+ G+  F+ + E+Y+I    EHY+ MV LLGR
Sbjct: 619 M--RKDGLHPSRVTLTSIISAYSHAEMVDEGKHAFSNISEEYQIRLDLEHYSAMVYLLGR 676

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           +G+LA+A E I+ M  EP+  VW ALL AC+ H N  +A  A +H+ EL+PE+     LL
Sbjct: 677 SGKLAKALEFIQNMPVEPNSSVWAALLTACRIHKNFGMAIFAGEHMLELDPENIITQHLL 736

Query: 559 TDLYANAG 566
           +  Y+  G
Sbjct: 737 SQAYSVCG 744



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 158/503 (31%), Positives = 270/503 (53%), Gaps = 24/503 (4%)

Query: 78  PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHARML 135
           P  +   ++  I    +  G+ LH ++   GL R     + TKL++ Y +C ++  AR +
Sbjct: 84  PITFMNLLQACIDKDCILVGRELHTRI---GLVRKVNPFVETKLVSMYAKCGHLDEARKV 140

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FDE+ + N+  W A+ GA +R    +E V +F++M   G+  + F++P VLKACG   DI
Sbjct: 141 FDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVLPDDFLLPKVLKACGKFRDI 200

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
            TG  IHSLV++    +   V +S++ +Y+KCG +  A+K+F  M E++ V+ N +++GY
Sbjct: 201 ETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKIFRRMDERNCVSWNVIITGY 260

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
            QRG   +A    + +    ++P +VTWN LI+ +S+ G   +   L + M + G+ PDV
Sbjct: 261 CQRGEIEQAQKYFDAMQEEGMEPGLVTWNILIASYSQLGHCDIAMDLMRKMESFGITPDV 320

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
            +WTS+ISG       +EAFD  ++ML  G  P S TI+S   ACAS  ++  G EIH  
Sbjct: 321 YTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASAASACASVKSLSMGSEIHSI 380

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
           A+   +  D+ + ++L+DMYAK G +  A+++FD M ER+  +WNS+I G    G+C +A
Sbjct: 381 AVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDVYSWNSIIGGYCQAGFCGKA 440

Query: 436 IELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
            ELF +M+E     + +++  ++T     G  +    LF  +++  KI P    +  ++ 
Sbjct: 441 HELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLRIEKDGKIKPNVASWNSLIS 500

Query: 495 LLGRAGRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
              +  +  +A ++ + M   +  P+L     +L AC N        +AAK + E+   +
Sbjct: 501 GFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPACTNL-------VAAKKVKEIHCCA 553

Query: 552 AANNML--------LTDLYANAG 566
              N++          D YA +G
Sbjct: 554 TRRNLVSELSVSNTFIDSYAKSG 576



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 88/159 (55%)

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R+  D   K N+  W +L   + +     +A+ +F +M    +  N+  + ++L AC +L
Sbjct: 481 RIEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPACTNL 540

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
                 ++IH    + +  ++  V ++ ID Y+K G++  ++KVFD +  KDI++ N+++
Sbjct: 541 VAAKKVKEIHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSRKVFDGLSPKDIISWNSLL 600

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291
           SGYV  G +  AL+L +++    + P+ VT  ++IS +S
Sbjct: 601 SGYVLHGCSESALDLFDQMRKDGLHPSRVTLTSIISAYS 639



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 7/237 (2%)

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA      +  QG      T  ++L AC     +  G+E+H   I +  + +  V + LV
Sbjct: 67  EAVAILDSLAQQGSKVRPITFMNLLQACIDKDCILVGRELH-TRIGLVRKVNPFVETKLV 125

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
            MYAKCG + EAR +FD+M ERN  TW++MI  C+     +E +ELF  M +   L D  
Sbjct: 126 SMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVLPDDF 185

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
               VL AC     +E G RL + +  +  +         ++ +  + G ++ A ++ + 
Sbjct: 186 LLPKVLKACGKFRDIETG-RLIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKIFRR 244

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLTDLYANAG 566
           M  E +   W  ++      G IE A+     + E  +EP     N+L+   Y+  G
Sbjct: 245 MD-ERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLVTWNILIAS-YSQLG 299



 Score = 45.4 bits (106), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 426 CANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
           CAN G   EA+ + + + ++  K+  ++F  +L AC     + +G+ L   +    K+ P
Sbjct: 60  CAN-GSLSEAVAILDSLAQQGSKVRPITFMNLLQACIDKDCILVGRELHTRIGLVRKVNP 118

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
             E    +V +  + G L EA ++   M  E +LF W A++GAC
Sbjct: 119 FVE--TKLVSMYAKCGHLDEARKVFDEMR-ERNLFTWSAMIGAC 159


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 171/526 (32%), Positives = 283/526 (53%), Gaps = 35/526 (6%)

Query: 76  LSP--AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
           +SP    Y   ++ +     L  GK +H   +  GL    ++ T L+T    C ++  A+
Sbjct: 225 ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAK 284

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
             F  I   ++  + AL  A A+ G++ EA   ++ M   G+  N     S+L AC    
Sbjct: 285 QAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK 344

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
            +  G+ IHS + +    +D  + ++LI MY++CG + KA+++F  M ++D+++ NA+++
Sbjct: 345 ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIA 404

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTW---------------------NTLISGFSK 292
           GY +R    EA+ L +++ +  VKP  VT+                     + L SG   
Sbjct: 405 GYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKS 464

Query: 293 SGDQV-----MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
           +G        M  +   LM A+ V       DV+SW S+I+G   +   + A+  F+EM 
Sbjct: 465 NGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQ 524

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           ++   P + T +S+L  C +   +  GK+IHG     G++ D+++ +AL++MY +CG + 
Sbjct: 525 NEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQ 584

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTAC 460
           +AR +F  +  R+ ++W +MI GCA+ G   +AIELF QM+    +  D  +FT++L+AC
Sbjct: 585 DARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSAC 644

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            H GLV  G ++F+ M+ +Y ++P  EHY C+V LLGRA R  EA  +I  M   PD  V
Sbjct: 645 NHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAV 704

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           W  LLGAC+ HGNI LAE AA +  +L   + A  +LL+++YA AG
Sbjct: 705 WETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAG 750



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 251/509 (49%), Gaps = 40/509 (7%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           A Y   ++   R R L   K +HAQ++ +G+     ++  LI  Y +C+++  A  +F E
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P+ ++  W +L   YA++G+ ++A  +F EM   G   N     S+L AC   +++  G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +KIHS ++K  +  D  V +SL+ MY KCG + +A++VF  +  +D+V+ N M+  Y Q+
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------- 311
               E L L  ++ +  + P+ VT+  L+  F+         ++ +L   +G+       
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 312 ------------------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
                                   + DVV + ++I+ L  +  N EAF+ +  M S G  
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
               T  SIL AC+++  +  GK IH      G   D+ + +AL+ MYA+CG + +AR L
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLV 466
           F  M +R+ ++WN++I G A      EA+ L+ QM+ E  K   ++F  +L+AC +    
Sbjct: 388 FYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAY 447

Query: 467 ELGQRLF-NMMQEKYKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
             G+ +  ++++   K      H A  ++++  R G L EA  + +      D+  W ++
Sbjct: 448 ADGKMIHEDILRSGIK---SNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSM 503

Query: 525 LGACKNHGNIELAEIAAKHLS--ELEPES 551
           +     HG+ E A    + +   ELEP++
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 195/403 (48%), Gaps = 36/403 (8%)

Query: 62  EAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLIT 121
           E +Y+M   S    L+   Y   +      +AL++GK++H+ +   G +   QI   LI+
Sbjct: 316 EQYYRMR--SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 122 FYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            Y  C ++  AR LF  +PK ++  W A+   YARR    EA+ ++ +M  +G+K     
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
              +L AC + S    G+ IH  +L+    ++  + ++L++MY +CGS+ +A+ VF+   
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG------------ 289
            +D+++ N+M++G+ Q G    A  L +E+    ++P+ +T+ +++SG            
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 290 ----FSKSGDQVMVS----------KLFQLMRAKGV-----EPDVVSWTSVISGLVHNFC 330
                ++SG Q+ V+          +   L  A+ V       DV+SWT++I G      
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 331 NDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGC-AIVMGVEGDLHVR 388
           + +A + F +M ++GF  P  +T +SIL AC  A  +  G +I        GV   +   
Sbjct: 614 DMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHY 673

Query: 389 SALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
             LV +  +     EA TL ++M    +   W +++  C  HG
Sbjct: 674 GCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHG 716


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/439 (36%), Positives = 260/439 (59%), Gaps = 17/439 (3%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I  AR LFD++P  N+  W A+  AY +  +  EA+++F EM     ++N     +V+  
Sbjct: 249 IAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMP----EKNSISWTTVING 304

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
              +  +    ++    L      +    +++I  Y +   ++ A+++F+++  +D+V  
Sbjct: 305 YVRMGKLDEARQL----LNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCW 360

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           N M++GY Q G   EAL+L +++    VK ++V+WNT+++ +++ G      K+F+ M+ 
Sbjct: 361 NTMIAGYSQCGRMDEALHLFKQM----VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMK- 415

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
              E ++VSW S+ISGL  N    +A  +F  M  +G  P  +T +  L +CA  A ++ 
Sbjct: 416 ---EKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQV 472

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           GK++H   +  G   DL V +AL+ MYAKCG IS A  LF  +   + V+WNS+I   A 
Sbjct: 473 GKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYAL 532

Query: 429 HGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           +G   EA++LF++ME E    D ++F  +L+AC HVGL++ G +LF  M + Y I P  E
Sbjct: 533 NGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAE 592

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           HYACMVDLLGRAGRL EA+++++ M    +  +WGALLGAC+ HGN+ELA+ AA+ L E 
Sbjct: 593 HYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEF 652

Query: 548 EPESAANNMLLTDLYANAG 566
           EP   +N +LL+++ A AG
Sbjct: 653 EPHKTSNYVLLSNMQAEAG 671



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/484 (23%), Positives = 214/484 (44%), Gaps = 68/484 (14%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+ + +   I  AR LFD +P+ NI  W ++  AY      +EA  +F +M  + L   
Sbjct: 52  MISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSW 111

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             +I    +        G   K  +L     +  +    ++++  Y+K    ++A+++FD
Sbjct: 112 TLMITCYTRN-------GELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFD 164

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV---------------------- 276
            M  KD+V+ N+M++GY + G     L   EE+    V                      
Sbjct: 165 AMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEF 224

Query: 277 -----KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                 PN V+W T++ GF++ G      +LF  M  +    +VV+W ++I+  V N   
Sbjct: 225 FEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIR----NVVAWNAMIAAYVQNCHV 280

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           DEA   F EM  +     S + ++++        +   +++        V      ++A+
Sbjct: 281 DEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAA----QTAM 332

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451
           +  Y +   + +AR +F+++S R+ V WN+MI G +  G  DEA+ LF QM ++   D +
Sbjct: 333 ISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKK---DIV 389

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           S+  ++ +   VG ++   ++F  M+EK  +      +  ++  L + G   +A +    
Sbjct: 390 SWNTMVASYAQVGQMDAAIKIFEEMKEKNIV-----SWNSLISGLTQNGSYLDALKSFML 444

Query: 512 MSTE---PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA------ANNMLLTDLY 562
           M  E   PD   +   L +C +   +++     K L +L  +S        +N L+T +Y
Sbjct: 445 MGHEGQKPDQSTFACGLSSCAHLAALQV----GKQLHQLVMKSGYATDLFVSNALIT-MY 499

Query: 563 ANAG 566
           A  G
Sbjct: 500 AKCG 503



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 151/326 (46%), Gaps = 43/326 (13%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           AA +  I  Y++++ +   + +  Q+ +    R       +I  Y++C  +  A  LF +
Sbjct: 327 AAQTAMISGYVQNKRMDDARQIFNQISI----RDVVCWNTMIAGYSQCGRMDEALHLFKQ 382

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH----------IQGLKQNIFVIPSV--- 185
           + K +I  W  +  +YA+ G    A+ +F EM           I GL QN   + ++   
Sbjct: 383 MVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSF 442

Query: 186 ------------------LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227
                             L +C HL+ +  G+++H LV+K  + TD FV ++LI MY+KC
Sbjct: 443 MLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKC 502

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
           GS+  A+ +F ++   D+V+ N++++ Y   G   EAL L  ++    V P+ VT+  ++
Sbjct: 503 GSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGIL 562

Query: 288 SGFSKSG--DQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
           S  S  G  DQ +  KLF+ M +A  +EP    +  ++  L      +EAF   + M   
Sbjct: 563 SACSHVGLIDQGL--KLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGM--- 617

Query: 345 GFCPTSATISSILPACASAANMRRGK 370
                +    ++L AC    N+   K
Sbjct: 618 KINANAGIWGALLGACRIHGNLELAK 643



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 161/361 (44%), Gaps = 49/361 (13%)

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V +H    +    +S+I  ++K G +  A+++FD M +++IV+ N+M++ Y+      EA
Sbjct: 37  VFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEA 96

Query: 265 LNLVEEIGTPRV----------------------------KPNVVTWNTLISGFSKSGDQ 296
             L +++ T  +                            K N V  N +++G++K+   
Sbjct: 97  RQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQF 156

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               +LF  M AK    D+VSW S+++G   N         F+EM  +     +  +   
Sbjct: 157 DEARRLFDAMPAK----DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGF 212

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           +      ++    ++I     V  V         ++  +A+ G I+EAR LFD+M  RN 
Sbjct: 213 VEVGDLNSSWEFFEKIPNPNTVSWV--------TMLCGFARFGKIAEARRLFDQMPIRNV 264

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           V WN+MI     + + DEAI LF +M E+   + +S+T V+     +G ++  ++L N M
Sbjct: 265 VAWNAMIAAYVQNCHVDEAISLFMEMPEK---NSISWTTVINGYVRMGKLDEARQLLNQM 321

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             +  +  +T     M+    +  R+ +A ++   +S   D+  W  ++      G ++ 
Sbjct: 322 PYR-NVAAQT----AMISGYVQNKRMDDARQIFNQISIR-DVVCWNTMIAGYSQCGRMDE 375

Query: 537 A 537
           A
Sbjct: 376 A 376



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 12/119 (10%)

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455
            K G I EA  +F  M+ +NTVT NSMI   A +G   +A +LF+ M +R   + +S+ +
Sbjct: 26  GKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQR---NIVSWNS 82

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTM 512
           ++ A  H   VE  ++LF+        MP  + Y+   M+    R G LA+A  +   +
Sbjct: 83  MIAAYLHNDRVEEARQLFDK-------MPTRDLYSWTLMITCYTRNGELAKARNLFNLL 134


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 171/510 (33%), Positives = 274/510 (53%), Gaps = 55/510 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +  G  +H   +  G      +A  LI  Y+  + + +AR+LFDE+P  ++  W A+ 
Sbjct: 97  RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMI 156

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             Y + G  +EA+T+ +     GL+  +   + S+L AC    D   G  IHS  +KH  
Sbjct: 157 SGYCQSGNAKEALTLSN-----GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 211

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++                +   +KVFD M  +D+++ N+++  Y        A++L +E
Sbjct: 212 ESEL---------------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 256

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGD---------------------------QVMVSKLF 303
           +   R++P+ +T  +L S  S+ GD                            VM +KL 
Sbjct: 257 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLG 316

Query: 304 QLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSIL 357
            +  A+ V       DV+SW ++ISG   N    EA + +  M  +G       T  S+L
Sbjct: 317 LVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVL 376

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           PAC+ A  +R+G ++HG  +  G+  D+ V ++L DMY KCG + +A +LF ++   N+V
Sbjct: 377 PACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 436

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WN++I     HG+ ++A+ LF +M +E  K DH++F  +L+AC H GLV+ GQ  F MM
Sbjct: 437 PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMM 496

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           Q  Y I P  +HY CMVD+ GRAG+L  A + IK+MS +PD  +WGALL AC+ HGN++L
Sbjct: 497 QTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 556

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +IA++HL E+EPE    ++LL+++YA+AG
Sbjct: 557 GKIASEHLFEVEPEHVGYHVLLSNMYASAG 586



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 208/436 (47%), Gaps = 43/436 (9%)

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSD 194
           FD I   +++ W  +   Y R G   E +  F   M   GL  +    PSVLKAC  + D
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID 101

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
              G KIH L LK  F  D +V +SLI +YS+  +V  A+ +FDEM  +D+ + NAM+SG
Sbjct: 102 ---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISG 158

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD---QVMV------------ 299
           Y Q G A EAL L   +       + VT  +L+S  +++GD    V +            
Sbjct: 159 YCQSGNAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESE 214

Query: 300 -----SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                 K+F  M  +    D++SW S+I     N     A   F+EM      P   T+ 
Sbjct: 215 LLRDCQKVFDRMYVR----DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLI 270

Query: 355 SILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           S+    +   ++R  + + G  +  G    D+ + +A+V MYAK G +  AR +F+ +  
Sbjct: 271 SLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPN 330

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQR 471
            + ++WN++I G A +G+  EAIE++N MEE  ++  +  ++ +VL AC   G +  G +
Sbjct: 331 TDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMK 390

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGAC 528
           L   +  K  +         + D+ G+ GRL +A   +  I  +++ P    W  L+   
Sbjct: 391 LHGRLL-KNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVP----WNTLIACH 445

Query: 529 KNHGNIELAEIAAKHL 544
             HG+ E A +  K +
Sbjct: 446 GFHGHGEKAVMLFKEM 461


>gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 669

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 257/469 (54%), Gaps = 41/469 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  +I  G      +   LIT+YT+C NI  AR +FDE+   ++  W ++   Y++ G 
Sbjct: 154 VHGFVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDRDVVSWNSMISGYSQSGS 213

Query: 160 HQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            ++   ++  M      K N   + SVL+ACG  SD+  G ++H  ++++    D  + +
Sbjct: 214 FEDCKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVFGMEVHKKMIENHIQMDLSLCN 273

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           ++I  Y+KCGS++ A+ +FDEM EKD V   A++SGY+  GL  EA+             
Sbjct: 274 AVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAM------------- 320

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
                                  LF  M + G+     +W +VISGL+ N  ++E  ++F
Sbjct: 321 ----------------------ALFSEMESIGLS----TWNAVISGLMQNNHHEEVINSF 354

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           +EM+  G  P + T+SS+LP+   ++N++ GKEIH  AI  G + +++V ++++D YAK 
Sbjct: 355 REMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGSDNNIYVTTSIIDNYAKL 414

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           GF+  A+ +FD   +R+ + W ++I   A HG  D A  LF+QM+    K D+++ TAVL
Sbjct: 415 GFLLGAQRVFDNCKDRSLIVWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDNVTLTAVL 474

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           +A  H G  +  Q +F+ M  KY I P  EHYACMV +L RAG+L+ A E I  M  EP 
Sbjct: 475 SAFAHSGDSDKAQHIFDSMLTKYNIEPGVEHYACMVSVLSRAGKLSNAMEFISKMPIEPI 534

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             VWGALL      G++E+A  A   L E+EPE+  N  ++ +LY  AG
Sbjct: 535 AKVWGALLNGASVLGDVEIARFACDRLFEMEPENTGNYTIMANLYTQAG 583



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 123/261 (47%), Gaps = 32/261 (12%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN------------- 143
           G  +H ++I + +     +   +I FY +C ++ +AR LFDE+ + +             
Sbjct: 253 GMEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312

Query: 144 ------------------IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
                             +  W A+     +  +H+E +  F EM   G + N   + S+
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAVISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L +  + S++  G++IH+  +++    + +V +S+ID Y+K G +  A++VFD   ++ +
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGSDNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           +   A+++ Y   G +  A +L +++     KP+ VT   ++S F+ SGD      +F  
Sbjct: 433 IVWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDNVTLTAVLSAFAHSGDSDKAQHIFDS 492

Query: 306 MRAK-GVEPDVVSWTSVISGL 325
           M  K  +EP V  +  ++S L
Sbjct: 493 MLTKYNIEPGVEHYACMVSVL 513



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 45/237 (18%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +HA  I +G      + T +I  Y +   +  A+ +FD     ++  W A+  A
Sbjct: 382 LKGGKEIHAFAIRNGSDNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIVWTAIITA 441

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA  G    A ++F +M   G K +   + +VL A  H                      
Sbjct: 442 YAVHGDSDSACSLFDQMQCLGTKPDNVTLTAVLSAFAH---------------------- 479

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEM-----VEKDIVAMNAMVSGYVQRGLATEALNLV 268
                         G  +KA+ +FD M     +E  +     MVS   + G  + A+  +
Sbjct: 480 -------------SGDSDKAQHIFDSMLTKYNIEPGVEHYACMVSVLSRAGKLSNAMEFI 526

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            ++    ++P    W  L++G S  GD V +++ F   R   +EP+     ++++ L
Sbjct: 527 SKM---PIEPIAKVWGALLNGASVLGD-VEIAR-FACDRLFEMEPENTGNYTIMANL 578


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/395 (40%), Positives = 227/395 (57%), Gaps = 40/395 (10%)

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
           +G+K N F + +V+KAC  ++ +  G++ H+ ++K  F +D  V ++L+ MY++CGS+E 
Sbjct: 4   KGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLED 63

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A  VFD+M E+                                   +  TWN +I+G ++
Sbjct: 64  AGHVFDKMSER-----------------------------------STRTWNAMITGHAQ 88

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           + D     KLF  M     E DVVSWT+VI+G   N   DE+ + F +M   G       
Sbjct: 89  NRDMKKALKLFYEMS----ERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFI 144

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           + S+L ACA  A +  G++ H   +  G   D+ V SALVDMYAK G + +A  +FDKM 
Sbjct: 145 MGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMP 204

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
           +RN V+WNS+I GCA HG  ++A+ LF QM +   K + +SF  VL+AC H GLV  G+ 
Sbjct: 205 QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRG 264

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
            FN+M + Y I+P   HY CM+DLLGRAG L EA   I  M  EPD+ VWGALLGAC+ H
Sbjct: 265 YFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIH 324

Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GN ELA+  A+HL  +E + A   +LL+++YA AG
Sbjct: 325 GNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAG 359



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 197/408 (48%), Gaps = 40/408 (9%)

Query: 13  KPFQFTLSMNDFYSIRRIYFALLSGTQLVLSCSKSAS-DAGKPLINGIFIEAHYKMPIIS 71
           KP QFTLS                   +V +C+  AS + GK        +AH    II 
Sbjct: 7   KPNQFTLST------------------VVKACASIASLEQGK--------QAHNY--IIK 38

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHH 131
             F       +  + +Y R  +L+    +  ++      R T+    +IT + + +++  
Sbjct: 39  MGFESDVVVQTALVHMYARCGSLEDAGHVFDKMS----ERSTRTWNAMITGHAQNRDMKK 94

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  LF E+ + ++  W A+   YA+ GY  E++ VF++M   G+K + F++ SVL AC  
Sbjct: 95  ALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACAD 154

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L+ +  G + H+ V++  F  D  V S+L+DMY+K GS+E A +VFD+M +++ V+ N++
Sbjct: 155 LAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSI 214

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-G 310
           ++G  Q G   +A+ L E++    +KPN +++  ++S  S +G        F LM    G
Sbjct: 215 ITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYG 274

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           + PDV  +T +I  L    C DEA +    M  +   P  +   ++L AC    N    K
Sbjct: 275 IVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVE---PDVSVWGALLGACRIHGNTELAK 331

Query: 371 EIHGCAIVMGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            I     ++G+E  +  +   L ++YA  G   +A  +   M +R  +
Sbjct: 332 RI--AEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVM 377



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 34/224 (15%)

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M+ +G  P   T+S+++ ACAS A++ +GK+ H   I MG E D+ V++ALV MYA+CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 401 ISEARTLFDKMSERNTVTWNSMIF-------------------------------GCANH 429
           + +A  +FDKMSER+T TWN+MI                                G A +
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 430 GYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           GY DE++ +FNQM +   K D     +VL+AC  +  +ELG R F+    +         
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG-RQFHAYVVQSGFALDIVV 179

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            + +VD+  ++G + +A ++   M    ++  W +++  C  HG
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEV-SWNSIITGCAQHG 222


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 268/476 (56%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  +V+GL     + T ++ FY +   + +A M+FD +   ++  W  L  
Sbjct: 245 GVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLLIS 304

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+ +   M ++ LK +   + +++       +   G+++    ++HSF +
Sbjct: 305 GYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFES 364

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+KCGS+  AKKVFD  V+KD++  N +++ Y + GL+ EAL L  E+ 
Sbjct: 365 DIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQ 424

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G      K+F  M++ G+ P +VSWT++++GLV N C++
Sbjct: 425 LESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMNGLVQNGCSE 484

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSAL 391
           EA    ++M   G  P   +I+  L ACA+ A++  G+ +HG  I   +    + + ++L
Sbjct: 485 EAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSL 544

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG IS+A  +F +        +N+MI   A +G  +EA+ L+  +++   K D+
Sbjct: 545 VDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYRSLDDMGIKPDN 604

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT +L+AC H G +     +F+ M  K+ + P  EHY  MVDLL  AG   +A  +++
Sbjct: 605 ITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKALRLME 664

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  EPD  +  +LL  C      EL E  +K L E EP+++ N + +++ YA  G
Sbjct: 665 EMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNYVTISNAYAVEG 720



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/534 (28%), Positives = 261/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R   +G+ +HA+++ +G   A+   I TKL+ FY +C  +
Sbjct: 20  RNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDAL 79

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A +LF ++   N+  W A+ G   R G  + A+  F EM    +  + FV+P+V KAC
Sbjct: 80  EIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKAC 139

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L   G G  +H  V K       FV SSL DMY KCG ++ A+KVFDE+ E+++VA N
Sbjct: 140 GALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWN 199

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L+ ++    V+P  VT +T +S  +  G               
Sbjct: 200 ALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKQSHALAVVN 259

Query: 295 ----DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + +             +++  + V  DVV+W  +ISG V     ++A    
Sbjct: 260 GLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLLISGYVQQGLVEDAIRMC 319

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           K M  +       T+S+++   A   N + GKE+    I    E D+ + S  VDMYAKC
Sbjct: 320 KLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASTAVDMYAKC 379

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD   +++ + WN+++   A  G   EA+ LF +M+ E    + +++  ++
Sbjct: 380 GSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLII 439

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V+  +++F  MQ    I+P    +  M++ L + G   EA   ++ M     
Sbjct: 440 LSLLRNGQVDEAKKMFLQMQSS-GIVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGM 498

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
            P++F     L AC N  ++        ++  + L   S +    L D+YA  G
Sbjct: 499 RPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCG 552



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 215/444 (48%), Gaps = 47/444 (10%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G  +EA+++  EM  + ++    +   +L+ C +  D  TG++IH+ +LK+   +  +
Sbjct: 3   KNGEIKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYAKN 62

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL-----NLV 268
            ++ + L+  Y+KC ++E A+ +F ++  +++ +  A++    + GL   AL      L 
Sbjct: 63  EYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMGFVEMLK 122

Query: 269 EEIGTPR-VKPNV------VTWNTLISG----FSKSG--DQVMVSKLFQLMRAK-GV--- 311
           +EI     V PNV      + W     G     +KSG  D V V+     M  K GV   
Sbjct: 123 DEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDD 182

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E +VV+W +++ G V N  N+EA     +M  +G  PT  T+S+ L A A+
Sbjct: 183 ARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASAN 242

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H  A+V G+E D  + +++++ Y K G +  A  +FD+M  ++ VTWN +
Sbjct: 243 MGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLL 302

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G    G  ++AI +   M  E+ K D ++ + +++        +LG+ +     + Y 
Sbjct: 303 ISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEV-----QCYC 357

Query: 482 IMPRTEHYACM----VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           I    E    +    VD+  + G + +A ++  + + + DL +W  LL A    G   L+
Sbjct: 358 IRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDS-TVQKDLILWNTLLAAYAESG---LS 413

Query: 538 EIAAKHLSELEPESAANNMLLTDL 561
             A +   E++ ES   N++  +L
Sbjct: 414 GEALRLFYEMQLESVPPNVITWNL 437



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 13/237 (5%)

Query: 93  ALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHA-----RMLFDEIPKTNIHR 146
           +L  G+ +H  +I + L +    I T L+  Y +C +I  A     R LF E+P  N   
Sbjct: 517 SLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYN--- 573

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LV 205
             A+  AYA  G  +EA+ ++  +   G+K +     ++L AC H  DI    +I S +V
Sbjct: 574 --AMISAYALYGNVEEAMALYRSLDDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMV 631

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            KH           ++D+ +  G  EKA ++ +EM  +    M   +     +   TE +
Sbjct: 632 SKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELV 691

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
             + +        N   + T+ + ++  G    V K+ ++M+AKG++     SW  V
Sbjct: 692 EYLSKQLLESEPDNSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKQPGCSWIRV 748


>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
 gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
          Length = 559

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/518 (33%), Positives = 284/518 (54%), Gaps = 36/518 (6%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLT-QIATKLITFYTECQNIHHARMLFDEI 139
           YS  ++  I   A + GK +H ++  +  +     ++TKLI FY    ++  AR +FD +
Sbjct: 14  YSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARKMFDGM 73

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P  ++  W A+   YAR G  +EA+ +F  M   G + N F   S   AC       +GE
Sbjct: 74  PHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGE 133

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H+   K  F  D FV S+L+DM+ +CGSVE A+++F EM +KD+V+ NA++ G+V+RG
Sbjct: 134 QVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERG 193

Query: 260 LATEALNLVEEI-------------------GTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
              +AL L   +                   G   V  NV   ++ I       ++V++ 
Sbjct: 194 HDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIG 253

Query: 301 KLFQ-------LMRAKGV-----EPDVVSWTSVISG--LVHNFCNDEAFDTFKEMLSQGF 346
            L         +  A+ +     EPD+VS T++ISG  +  N+  D A + F ++  +G 
Sbjct: 254 SLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSED-AMELFCKIHRKGL 312

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
                 +SS+L  CAS A+ R G +IH         GD+ + +ALVDMYAK G  S+A+ 
Sbjct: 313 WIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFSDAKR 372

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGL 465
            FD+M  RN ++W S+I  C  +G  ++A+ LFN+M E+  + + ++F ++L+AC H GL
Sbjct: 373 AFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGL 432

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
              G   F  M  +Y I PR EHY+  +DLL R G+L +A+++++  + +P+  + GA+L
Sbjct: 433 TNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAML 492

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           GACK HGN+ L E AAK+L  ++P S+ N  +L ++YA
Sbjct: 493 GACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYA 530



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 4/186 (2%)

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHG-CAIVMGVEGDLHVRSALVDMYAKCGF 400
           L  G  PT+   SS+L  C S+   R+GK +HG  A       DLH+ + L+  YA+ G 
Sbjct: 3   LLMGAKPTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGD 62

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTA 459
           ++ AR +FD M  R+ V+W +M+ G A +G   EA+ELF  M     + +  ++ +  +A
Sbjct: 63  VAAARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASA 122

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C   G    G+++ +    K +        + ++D+  R G + +A ++   M  + D+ 
Sbjct: 123 CAGAGCARSGEQV-HACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKK-DVV 180

Query: 520 VWGALL 525
            W AL+
Sbjct: 181 SWNALI 186


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 266/510 (52%), Gaps = 40/510 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A   GK++H  ++ SG+     +A  L+  Y  C ++  A+ +F+     ++  W ++  
Sbjct: 446 AYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIA 505

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A+ G ++ A  +F EM  + L+ +     SVL  C +   +  G++IH  + +     
Sbjct: 506 GHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL 565

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + ++LI+MY +CGS++ A+ VF  +  +D+++  AM+ G   +G   +A+ L  ++ 
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
               +P   T+                                   N LIS +SKSG   
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMT 685

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F  M ++    D+VSW  +I+G   N     A +   +M  Q   P   +  S+L
Sbjct: 686 DAREVFDKMPSR----DIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLL 741

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC+S + +  GK +H   +   ++GD+ V +AL+ MYAKCG   EA+ +FD + E+N V
Sbjct: 742 NACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVV 801

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TWN+MI   A HG   +A+  FN ME E  K D  +FT++L+AC H GLV  G ++F+ M
Sbjct: 802 TWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSM 861

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           + +Y ++P  EHY C+V LLGRA R  EA  +I  M   PD  VW  LLGAC+ HGNI L
Sbjct: 862 ESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIAL 921

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE AA +  +L   + A  +LL+++YA AG
Sbjct: 922 AEHAANNALKLNARNPAVYILLSNVYAAAG 951



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 144/503 (28%), Positives = 258/503 (51%), Gaps = 36/503 (7%)

Query: 62  EAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLIT 121
           E +Y+M   S    L+   Y   +      +AL++GK++H+ +   G +   QI   LI+
Sbjct: 316 EQYYRMR--SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 122 FYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            Y  C ++  AR LF  +PK ++  W A+   YARR    EA+ ++ +M  +G+K     
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
              +L AC + S    G+ IH  +L+    ++  + ++L++MY +CGS+ +A+ VF+   
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG------------ 289
            +D+++ N+M++G+ Q G    A  L +E+    ++P+ +T+ +++SG            
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 290 ----FSKSGDQVMVS----------KLFQLMRAKGV-----EPDVVSWTSVISGLVHNFC 330
                ++SG Q+ V+          +   L  A+ V       DV+SWT++I G      
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           + +A + F +M ++GF P  +T SSIL  C S+A +  GK++    +  G E D  V +A
Sbjct: 614 DMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNA 673

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-D 449
           L+  Y+K G +++AR +FDKM  R+ V+WN +I G A +G    A+E   QM+E+  + +
Sbjct: 674 LISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPN 733

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
             SF ++L AC     +E G+R+   +  K K+       A ++ +  + G   EA E+ 
Sbjct: 734 KFSFVSLLNACSSFSALEEGKRVHAEIV-KRKLQGDVRVGAALISMYAKCGSQGEAQEVF 792

Query: 510 KTMSTEPDLFVWGALLGACKNHG 532
             +  E ++  W A++ A   HG
Sbjct: 793 DNI-IEKNVVTWNAMINAYAQHG 814



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 238/475 (50%), Gaps = 42/475 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++GK +H+Q+I +G  R  ++   L++ Y +C ++  AR +F  I   ++  +  + G 
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA++ Y +E + +F +M  +G+  +     ++L A    S +  G++IH L ++    +D
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++L+ M  +CG V+ AK+ F    ++D+V  NA+++   Q G   EA      + +
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
             V  N  T+                                   N LIS +++ GD   
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPK 383

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             +LF  M  +    D++SW ++I+G        EA   +K+M S+G  P   T   +L 
Sbjct: 384 ARELFYTMPKR----DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA+++    GK IH   +  G++ + H+ +AL++MY +CG + EA+ +F+    R+ ++
Sbjct: 440 ACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS 499

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNSMI G A HG  + A +LF +M+ E  + D+++F +VL+ C +   +ELG+++   + 
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT 559

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           E   +         ++++  R G L +A  +  ++    D+  W A++G C + G
Sbjct: 560 ES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQG 612



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 247/510 (48%), Gaps = 42/510 (8%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           A Y   ++   R R L   K +HAQ++ + +     ++  LI  Y +C+++  A  +F E
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P+ ++  W +L   YA++G+ ++A  +F EM   G   N     S+L AC   +++  G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +KIHS ++K  +  D  V +SL+ MY KCG + +A++VF  +  +D+V+ N M+  Y Q+
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------- 311
               E L L  ++ +  + P+ VT+  L+  F+         ++ +L   +G+       
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 312 ------------------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
                                   + DVV + ++I+ L  +  N EAF+ +  M S G  
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
               T  SIL AC+++  +  GK IH      G   D+ + +AL+ MYA+CG + +AR L
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLV 466
           F  M +R+ ++WN++I G A      EA+ L+ QM+ E  K   ++F  +L+AC +    
Sbjct: 388 FYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAY 447

Query: 467 ELGQRLFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             G+    M+ E   +  I         ++++  R G L EA  + +      D+  W +
Sbjct: 448 ADGK----MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNS 502

Query: 524 LLGACKNHGNIELAEIAAKHLS--ELEPES 551
           ++     HG+ E A    + +   ELEP++
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 175/346 (50%), Gaps = 15/346 (4%)

Query: 22  NDFYSIRRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAY 81
           N F+S++  +  ++S T ++  C+    D          IE  ++M   +  F    + +
Sbjct: 588 NVFHSLQ--HRDVMSWTAMIGGCADQGEDMKA-------IELFWQMQ--NEGFRPVKSTF 636

Query: 82  SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK 141
           S  +++      L  GK + A ++ SG    T +   LI+ Y++  ++  AR +FD++P 
Sbjct: 637 SSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPS 696

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
            +I  W  +   YA+ G  Q AV   ++M  Q +  N F   S+L AC   S +  G+++
Sbjct: 697 RDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRV 756

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H+ ++K     D  V ++LI MY+KCGS  +A++VFD ++EK++V  NAM++ Y Q GLA
Sbjct: 757 HAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLA 816

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTS 320
           ++AL     +    +KP+  T+ +++S  + +G  +   ++F  M ++ GV P +  +  
Sbjct: 817 SKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGC 876

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
           ++  L       EA     +M    F P +A   ++L AC    N+
Sbjct: 877 LVGLLGRARRFQEAETLINQM---PFPPDAAVWETLLGACRIHGNI 919


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/435 (37%), Positives = 244/435 (56%), Gaps = 42/435 (9%)

Query: 135 LFDE-IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
           LF++ + KTN+  W ++    AR G   EA+  F  M    LK N    P  +K+C  L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
           D+ +G + H   L   F  D FV S+L+DMYSKCG +                       
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELR---------------------- 128

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                    +A  L +EI       N+V+W ++I+G+ ++ D     ++F  M     E 
Sbjct: 129 ---------DARTLFDEIS----HRNIVSWTSMITGYVQNDDAHRALRVFDGM----AER 171

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA-TISSILPACASAANMRRGKEI 372
           DV+SW S+I+    N  + E+ + F  M+  G    +A T+S++L ACA + + R GK I
Sbjct: 172 DVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCI 231

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H   I MG+E ++ V ++++DMY KCG +  AR  FD+M E+N  +W++M+ G   HG+ 
Sbjct: 232 HDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHA 291

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            EA+E+F +M     K ++++F +VL AC H GL+E G   F  M  ++ + P  EHY C
Sbjct: 292 KEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGC 351

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           MVDLLGRAG L EA+++IK M   PD  VWGALLGAC+ H N++L EI+A+ L EL+P++
Sbjct: 352 MVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKN 411

Query: 552 AANNMLLTDLYANAG 566
               +LL+++YA+AG
Sbjct: 412 CGYYVLLSNIYADAG 426



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 146/310 (47%), Gaps = 36/310 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI--------- 144
           L SG+  H Q ++ G      +++ L+  Y++C  +  AR LFDEI   NI         
Sbjct: 92  LHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITG 151

Query: 145 -------HR---------------WIALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFV 181
                  HR               W ++   YA+ G   E++ +FH M   G +  N   
Sbjct: 152 YVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVT 211

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + +VL AC H      G+ IH  V+K    ++ FV +S+IDMY KCG VE A+K FD M 
Sbjct: 212 LSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR 271

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           EK++ + +AMV+GY   G A EAL +  E+    VKPN +T+ ++++  S +G       
Sbjct: 272 EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH 331

Query: 302 LFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            F+ M  +  VEP V  +  ++  L       EAFD  K M  +   P      ++L AC
Sbjct: 332 WFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR---PDFVVWGALLGAC 388

Query: 361 ASAANMRRGK 370
               N+  G+
Sbjct: 389 RMHKNVDLGE 398


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/514 (35%), Positives = 270/514 (52%), Gaps = 34/514 (6%)

Query: 83  ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT 142
           ++I    R  +L   K +HAQ++ + L R + +  KLI  ++ C+ +  A  +F++I   
Sbjct: 19  QKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP 78

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           ++  +  L  A+ R      A +VF EM   G+  + F  P +LKAC     +   E IH
Sbjct: 79  DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIH 138

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCG--SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           + V K  F  D FV +SLID Y KCG   V  A+KVF+ M E+D V+ N+M+ G V+ G 
Sbjct: 139 AQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGE 198

Query: 261 ATEALNLVEE-----------IGTPRVKP----------------NVVTWNTLISGFSKS 293
             EA  L +E           I    VK                 NVV+W+T++ G+SK+
Sbjct: 199 LGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKA 258

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD  M   LF  M  K + P    WT +ISG        +A + + +M   G      T+
Sbjct: 259 GDMDMARILFDKMPVKNLVP----WTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTV 314

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            SIL ACA +  +  GK +H        +    V +AL+DMYAKCG +  A ++F  M  
Sbjct: 315 ISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVR 374

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           ++ V+WN++I G A HG+ ++A++LF++M+ E    D ++F  VL AC H G V+ G   
Sbjct: 375 KDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHY 434

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ M+  Y + P  EHY CMVDLLGR GRL EA+ ++ +M  EP+  +WG LLGAC+ H 
Sbjct: 435 FHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHS 494

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              LAE     L + E   + N  +L+++YA AG
Sbjct: 495 ATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAG 528


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/475 (34%), Positives = 275/475 (57%), Gaps = 1/475 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ GK  HA  ++ G+   T + + LI FY++   I  A  +F  + + ++  W  L  
Sbjct: 215 ALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLIS 274

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G   +A+ + H M ++ L+ +   + +++ A   + ++  G++ H   ++++  +
Sbjct: 275 GYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLES 334

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  VVSS++DMY+KC  +  A++VF+  + KD++  N M++ + + G + EALNL  ++ 
Sbjct: 335 DVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQ 394

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV++WN+LI GF  SG       +F  M++ GV+P++V+WT++ISGL  +    
Sbjct: 395 LESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGY 454

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA  TF+ M   G  P   +I  +L AC + A+++ G+ +HG  I   +   + + ++LV
Sbjct: 455 EAILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLV 514

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
           DMYAKCG   +A+ +FD + ++    +N+MI G A HG   EA+ L+  + EE  K D++
Sbjct: 515 DMYAKCGDRDQAKRVFDMIPDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNI 574

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +FT  L AC H  +V  G  LF  M   + I P  EHY CMV LL R G L EA+ +I  
Sbjct: 575 TFTNALYACSHAMMVSEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISA 634

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  +PD+ + G+LL AC+ H  IEL E  +  L +L+P+++ N + +++ YA AG
Sbjct: 635 MPYKPDVQILGSLLAACREHNKIELEEYLSNQLLKLQPDNSGNYVAMSNAYAAAG 689



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 245/509 (48%), Gaps = 64/509 (12%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           ++  + P  Y E ++  + +RAL +G+ +HAQ++  G   A    I TKL+ FY +C N 
Sbjct: 4   KNLRIGPEVYGELLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNP 63

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             +  LF  +   N+  W A+ G   R+G++QEA+  F EM   GL  + FV+P+VLKAC
Sbjct: 64  EASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKAC 123

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK------AKKVFDEMVEK 243
           G L  I  G+ +H LV                     CG V K       KK    M ++
Sbjct: 124 GGLEWIRIGKVVHGLV--------------------SCGYVWKMWGGGGCKKGVCGMPQR 163

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--------KSGD 295
           + VA N+M+ GYVQ GL  EA+ +  E+    V+P  VT ++ +S  +        K G 
Sbjct: 164 NAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGH 223

Query: 296 QVMV------------------SKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCND 332
            + V                  SK+  +  A+ V     E DVV+W  +ISG V     D
Sbjct: 224 AIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVD 283

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +A +    M  +     S T+++++ A A   N++ GKE H   I   +E D+ V S++V
Sbjct: 284 KALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSIV 343

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
           DMYAKC  I  AR +F+    ++ + WN+M+   A  G+  EA+ LF QM+ E    + +
Sbjct: 344 DMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVI 403

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEM 508
           S+ +++    + G V   + +F  MQ    + P    +  ++  L R+G   EA   ++ 
Sbjct: 404 SWNSLILGFLNSGQVNEAKDMFLQMQ-SLGVQPNLVTWTTLISGLARSGFGYEAILTFQR 462

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++    +P++     +L AC N  ++++ 
Sbjct: 463 MQEAGVKPNVVSIIGVLLACINLASLQIG 491



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 163/324 (50%), Gaps = 26/324 (8%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKC 227
           M ++ L+    V   +L+ C +   + TG +IH+ ++K    F  + ++ + L+  Y+KC
Sbjct: 1   MELKNLRIGPEVYGELLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKC 60

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-NVVTWNTL 286
            + E +  +F  +  K++ +  A++    ++G   EAL   +E+    + P N V  N L
Sbjct: 61  DNPEASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVL 120

Query: 287 --------------ISGFSKSGDQVMVSKLFQLMRAKGV-----EPDVVSWTSVISGLVH 327
                         + G    G    V K++     K       + + V+W S+I G V 
Sbjct: 121 KACGGLEWIRIGKVVHGLVSCG---YVWKMWGGGGCKKGVCGMPQRNAVAWNSMIVGYVQ 177

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N  N+EA + F EM  +G  PT  T+SS L A A+   ++ GK+ H  A++ G+E   ++
Sbjct: 178 NGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNL 237

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERK 446
            S+L++ Y+K G I +A ++F +M E++ VTWN +I G    G  D+A+ + + M  E  
Sbjct: 238 GSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENL 297

Query: 447 KLDHLSFTAVLTACCHVGLVELGQ 470
           + D ++   +++A   +  ++LG+
Sbjct: 298 RFDSVTLATLMSAFADMRNLKLGK 321



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/429 (19%), Positives = 172/429 (40%), Gaps = 80/429 (18%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L+ GK  H   I + L     + + ++  Y +C+ I  AR +F+     ++  W  + 
Sbjct: 315 RNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTML 374

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A+A  G+  EA+ +F++M ++ +  N+                                
Sbjct: 375 AAFAELGHSGEALNLFYQMQLESVPPNVISW----------------------------- 405

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNL 267
                 +SLI  +   G V +AK +F +M    V+ ++V    ++SG  + G   EA+  
Sbjct: 406 ------NSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEAILT 459

Query: 268 VEEIGTPRVKPNVVTW-----------------------------------NTLISGFSK 292
            + +    VKPNVV+                                     +L+  ++K
Sbjct: 460 FQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAK 519

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            GD+    ++F ++  K    ++  + ++ISG   +    EA   ++ +  +G  P + T
Sbjct: 520 CGDRDQAKRVFDMIPDK----ELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNIT 575

Query: 353 ISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
            ++ L AC+ A  +  G E+    +    +   +     +V + ++CG + EA  L   M
Sbjct: 576 FTNALYACSHAMMVSEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAM 635

Query: 412 SERNTVT-WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQ 470
             +  V    S++  C  H   +    L NQ+ + +  +  ++ A+  A    G  +  +
Sbjct: 636 PYKPDVQILGSLLAACREHNKIELEEYLSNQLLKLQPDNSGNYVAMSNAYAAAGRWDEVK 695

Query: 471 RLFNMMQEK 479
           ++  +M+E+
Sbjct: 696 KVRQLMKER 704



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 34/270 (12%)

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           L+  ++K  +    + LF+ +R K    +V SW +VI          EA   FKEM   G
Sbjct: 53  LVIFYAKCDNPEASNSLFRRVRLK----NVFSWAAVIGLNCRKGFYQEALLGFKEMQENG 108

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE-- 403
             P +  + ++L AC     +R GK +HG                       CG++ +  
Sbjct: 109 LLPDNFVLPNVLKACGGLEWIRIGKVVHG--------------------LVSCGYVWKMW 148

Query: 404 ----ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLT 458
                +     M +RN V WNSMI G   +G  +EAIE+F +M EE  +   ++ ++ L+
Sbjct: 149 GGGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLS 208

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           A  ++G ++ G++  + +     I   T   + +++   + G + +A  +   M  E D+
Sbjct: 209 ASANLGALQDGKQ-GHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRM-LEKDV 266

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELE 548
             W  L+      G ++ A +   HL  LE
Sbjct: 267 VTWNLLISGYVQIGEVDKA-LNMCHLMRLE 295


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 266/477 (55%), Gaps = 21/477 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G  LH   + +       I T  +  Y +C N+  A+ LF+ +P  N+  + A+  
Sbjct: 290 ALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIV 349

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YAR                +GL  +   +    +AC  +     G ++H L +K    +
Sbjct: 350 GYARSD--------------KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQS 395

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV--EE 270
           +  V ++++DMY KCG++ +A  VF+EMV +D V+ NA+++ + Q G   + L+L     
Sbjct: 396 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNR 455

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
           I   R+  +      LI  +SK G      KL   +     E  VVSW ++ISG      
Sbjct: 456 IIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRL----AEQTVVSWNAIISGFSLQKQ 511

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           ++EA  TF +ML  G  P + T ++IL  CA+   +  GK+IH   I   ++ D ++ S 
Sbjct: 512 SEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISST 571

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLD 449
           LVDMY+KCG + + + +F+K   R+ VTWN+M+ G A HG  +EA+++F  M+ E  K +
Sbjct: 572 LVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPN 631

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           H +F AVL AC H+GLVE G   F+ M   Y + P+ EHY+C+VD++GR+G++++A E+I
Sbjct: 632 HATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELI 691

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + M  E D  +W  LL  CK HGN+E+AE AA  + +LEPE +A  +LL+++YANAG
Sbjct: 692 EGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAG 748



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 141/590 (23%), Positives = 257/590 (43%), Gaps = 48/590 (8%)

Query: 7   LFPIR-------DKPFQFTLSMNDFYSIRRIYFALLSGTQLVLSCS-KSASDAGKPLING 58
           LFPIR         PF+ TL ++ F S +       + + +   CS + A   GK     
Sbjct: 9   LFPIRFFFNFQSKSPFK-TLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGK----- 62

Query: 59  IFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK 118
              +AH +M  I   F  +    +  I++YI+   L+      A  +  G+ +   ++  
Sbjct: 63  ---QAHARM--ILTEFKPTVFVTNCLIQMYIKCSDLE-----FAFKVFDGMPQRDTVSWN 112

Query: 119 LITF-YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            + F Y    +I  A+ LFD +P+ ++  W +L   Y   G H++ + VF +M   G   
Sbjct: 113 AMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVF 172

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +      VLK+C  L D G G +IH L +K  F  D    S+L+DMY+KC  ++ + + F
Sbjct: 173 DRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFF 232

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
             M EK+ V+ +A+++G VQ       L L +E+    V  +  T+ ++    +      
Sbjct: 233 HSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALR 292

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLV-----------------HNFCNDEAFDTFKE 340
           + S+L           DVV  T+ +   +                 HN  +  A      
Sbjct: 293 LGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA 352

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
              +G      ++S    ACA       G ++HG ++    + ++ V +A++DMY KCG 
Sbjct: 353 RSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGA 412

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ---MEERKKLDHLSFTAVL 457
           + EA  +F++M  R+ V+WN++I     +G  ++ + LF     ++ R  LD     A++
Sbjct: 413 LVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALI 472

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
                 G++E  ++L + + E+  +            L  ++    + +  +  M  +PD
Sbjct: 473 DMYSKCGMMEKAEKLHDRLAEQTVV--SWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPD 530

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN-NMLLTDLYANAG 566
            F +  +L  C N   +EL +     + + E +S A  +  L D+Y+  G
Sbjct: 531 NFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 580


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/506 (32%), Positives = 264/506 (52%), Gaps = 32/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK+LHA  + SG      +   L+  Y++C  ++ A  +F +I   ++  W A+  
Sbjct: 66  SLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMIT 125

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              ++G+ QEA  +FH M  +G + N F + S++    ++ D+  G+ IH  + K+ F +
Sbjct: 126 GLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFES 185

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V + LI MY K   VE   KVF+ M   D+V+ NA++SG+           +  ++ 
Sbjct: 186 DNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQML 245

Query: 273 TPRVKPNVVTWNTLISGFS------------------KSGDQVMVSKLFQLMRAKG---- 310
               KPN+ T+ +++   S                   S D   V      M AK     
Sbjct: 246 LEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLE 305

Query: 311 ---------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                    V  D+ SWT +ISG       ++A   F++M  +G  P   T++S L  C+
Sbjct: 306 DAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCS 365

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
             A +  G+++H  A+  G  GD+ V SALVD+Y KCG +  A  +F  +  R+ V+WN+
Sbjct: 366 HMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNT 425

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G + HG  ++A+E F  M  E    D  +F  VL+AC  +GLVE G++ F+ M + Y
Sbjct: 426 IISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIY 485

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I P  EHYACMVD+LGRAG+  E    I+ M+  P   +W  +LGACK HGN++  E A
Sbjct: 486 GINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKA 545

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           AK L E+EP   ++ +LL++++A+ G
Sbjct: 546 AKKLFEMEPMMDSSYILLSNIFASKG 571



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 215/444 (48%), Gaps = 46/444 (10%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  LF  +P+ N   W AL   YA+ G  ++ + +F +M     K + F + +VLK C +
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
              +  G+ +H+L L+     D F+  SL+DMYSKCG+V  A KVF ++   D+VA +AM
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD---------------- 295
           ++G  Q+G   EA  L   +     +PN  T ++L+S  +  GD                
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 296 --QVMVSK--LFQLMRAKGVE-----------PDVVSWTSVISGLVHNFCNDEAFDTFKE 340
               +VS   +   M+++ VE           PD+VSW +++SG   +         F +
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           ML +GF P   T  S+L +C+S  +   GK++H   I    + D  V +ALVDMYAK   
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC 303

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
           + +A   FD++  R+  +W  +I G A     ++A++ F QM+ E  K +  +  + L+ 
Sbjct: 304 LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSG 363

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHY------ACMVDLLGRAGRLAEAYEMIKTMS 513
           C H+  +E G++L       + +  +  H+      + +VDL G+ G +  A  + K + 
Sbjct: 364 CSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLI 416

Query: 514 TEPDLFVWGALLGACKNHGNIELA 537
           +  D+  W  ++     HG  E A
Sbjct: 417 SR-DIVSWNTIISGYSQHGQGEKA 439



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 38/262 (14%)

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
           + L E +     + N V+WN L++G+++ GD   V KLF  M+                 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKE---------------- 44

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
                C +  F  F             T+S++L  CA+  ++R GK +H  A+  G E D
Sbjct: 45  -----C-ETKFSKF-------------TLSTVLKGCANTGSLREGKVLHALALRSGCEID 85

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
             +  +LVDMY+KCG + +A  +F K+   + V W++MI G    G+  EA ELF+ M  
Sbjct: 86  EFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRR 145

Query: 445 R-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
           +  + +  + +++++   ++G +  GQ +   +  KY           ++ +  ++  + 
Sbjct: 146 KGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC-KYGFESDNLVSNPLIMMYMKSRCVE 204

Query: 504 EAYEMIKTMSTEPDLFVWGALL 525
           +  ++ + M T PDL  W ALL
Sbjct: 205 DGNKVFEAM-TNPDLVSWNALL 225


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 169/475 (35%), Positives = 264/475 (55%), Gaps = 45/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNI--HHARMLFDEIPKTNIHRWIALTGAYA 155
           K +HA +I +GL++ + + TKLI   T+       +  ++F ++   N   W A+   YA
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFGTDA 214
            +G   E+   +  M   G+    F   ++ KACG   ++  G+++H+  +L   F +D 
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           +V +S+ID+Y KCG +  A+KVFDEM E+D                              
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERD------------------------------ 208

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                VV+W  LI  ++K GD    S LF  +  K    D+V+WT++++G   N    EA
Sbjct: 209 -----VVSWTELIVAYAKYGDMESASGLFDDLPLK----DMVAWTAMVTGYAQNGRPKEA 259

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA--IVMGVEGDLHVRSALV 392
            + F++M   G      T++ ++ ACA    ++    I   A     G  G++ V SAL+
Sbjct: 260 LEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALI 319

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           DMY+KCG   EA  +F+ M ERN  +++SMI G A HG    A++LF+ M + + + + +
Sbjct: 320 DMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKV 379

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  +L+AC H GLVE G++LF  M++ + + P  +HYACMVDLLGRAG L EA +++KT
Sbjct: 380 TFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKT 439

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  EP+  VWGALLGAC+ HGN ++A+IAA  L +LEP    N +LL+++YA+AG
Sbjct: 440 MPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAG 494


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/509 (34%), Positives = 277/509 (54%), Gaps = 41/509 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G  LH  ++ SG  +   + T LI FY++  NI  AR++FD++ +     W  +   
Sbjct: 167 VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAG 226

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G    ++ +F +M    +  + +V+ SVL AC  L  +  G++IH+ VL+     D
Sbjct: 227 YTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 286

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             VV+ LID Y+KC  V+  +K+FD+MV K+I++   M+SGY+Q     EA+ L  E+  
Sbjct: 287 VSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNR 346

Query: 274 PRVKPN------VVT-----------------------------WNTLISGFSKSGDQVM 298
              KP+      V+T                              N LI  ++KS   + 
Sbjct: 347 LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLID 406

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             K+F +M     E +V+S+ ++I G        EA + F EM  +   P   T ++++ 
Sbjct: 407 AKKVFDVM----AEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALIT 462

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A ++ A++R G++ H   + MG++    V +ALVDMYAKCG I EAR +F+    R+ V 
Sbjct: 463 AASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVC 522

Query: 419 WNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNSMI   A HG  +EA+ +F + M+E  + ++++F AVL+AC H G VE G   FN M 
Sbjct: 523 WNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM- 581

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + I P TEHYAC+V LLGR+G+L EA E I+ M  EP   VW +LL AC+  GN+EL 
Sbjct: 582 PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELG 641

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           + AA+     +P+ + + +LL++++A+ G
Sbjct: 642 KYAAEMAISTDPKDSGSYILLSNIFASKG 670



 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 251/478 (52%), Gaps = 45/478 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           KI+H Q+IVSGL   T +A  LI   ++   + +AR++FD++P  N+  W ++   Y+++
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 158 GYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           GY +EA+ VF ++  + G   N FV+ SV++AC  L  +  G ++H  V++  F  D +V
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLID YSK G++E+A+ VFD++ EK  V    +++GY + G +  +L L  ++    V
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 277 KP-----------------------------------NVVTWNTLISGFSKSGDQVMVSK 301
            P                                   +V   N LI  ++K        K
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF  M  K    +++SWT++ISG + N  + EA   F EM   G+ P     +S+L +C 
Sbjct: 309 LFDQMVVK----NIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 364

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S   + +G+++H   I   +E D  V++ L+DMYAK   + +A+ +FD M+E+N +++N+
Sbjct: 365 SREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNA 424

Query: 422 MIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEK 479
           MI G ++     EA+ELF++M  R +K +  +F A++TA  ++  +  GQ+  N +++  
Sbjct: 425 MIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG 484

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
               P   +   +VD+  + G + EA +M  + S   D+  W +++     HG  E A
Sbjct: 485 LDFCPFVTN--ALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEA 539



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 166/325 (51%), Gaps = 4/325 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +HA  I + L     +   LI  Y +   +  A+ +FD + + N+  + A+  
Sbjct: 368 ALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIE 427

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y+ +    EA+ +FHEM ++  K N F   +++ A  +L+ +  G++ H+ ++K     
Sbjct: 428 GYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDF 487

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             FV ++L+DMY+KCGS+E+A+K+F+  + +D+V  N+M+S + Q G A EAL +  E+ 
Sbjct: 488 CPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMM 547

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              ++PN VT+  ++S  S +G        F  M   G++P    +  V+S L  +    
Sbjct: 548 KEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLF 607

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA +  ++M  +   P +    S+L AC  A N+  GK     AI    + D      L 
Sbjct: 608 EAKEFIEKMPIE---PAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPK-DSGSYILLS 663

Query: 393 DMYAKCGFISEARTLFDKMSERNTV 417
           +++A  G  ++ + + D+M     V
Sbjct: 664 NIFASKGMWADVKKVRDRMDSSEVV 688



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 37/202 (18%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P     +++L    S   +   K IHG  IV G++ D  + + L+++ +K   +  AR +
Sbjct: 47  PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVV 106

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVG 464
           FDKM  +N +TW+SM+   +  GY +EA+ +F  + +RK  +H       +V+ AC  +G
Sbjct: 107 FDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDL-QRKSGEHPNEFVLASVIRACTQLG 165

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           +VE G +L                       + R+G              + D++V  +L
Sbjct: 166 VVEKGAQLHG--------------------FVVRSG-------------FDQDVYVGTSL 192

Query: 525 LGACKNHGNIELAEIAAKHLSE 546
           +     +GNIE A +    LSE
Sbjct: 193 IDFYSKNGNIEEARLVFDQLSE 214


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 268/481 (55%), Gaps = 47/481 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  +H  +  S  +    + + L+  Y++C+ +  A+  FD++   NI  W +L   
Sbjct: 167 LSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITC 226

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGT 212
           Y + G   +A+ VF  M   G++ +   + SV  AC  LS I  G +IH+ V+KH  +  
Sbjct: 227 YEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRN 286

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + ++L+DMY+KC  V +A+ VFD M  +D+V+  +MVSGY +      A  +   + 
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNM- 345

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              ++ NVV+WN LI+G++++G+     +LF L++ + +      W              
Sbjct: 346 ---MERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI------W-------------- 382

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI------HGCAIVMGVEGDLH 386
                          PT  T  ++L ACA+ A+++ G++       HG     G + D+ 
Sbjct: 383 ---------------PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIF 427

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
           V ++L+DMY KCG + + R +F++M ER+ V+WN+MI G A +GY  EA+E+F +M    
Sbjct: 428 VGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSG 487

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
           ++ DH++   VL+AC H GLVE G+  F  M  ++ ++P  +HY CMVDLLGRAG L EA
Sbjct: 488 ERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEA 547

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             +I+TM  EPD  VWG+LL ACK HGNI L +  A+ L E++P ++   +LL+++YA  
Sbjct: 548 NNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAEL 607

Query: 566 G 566
           G
Sbjct: 608 G 608



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 152/295 (51%), Gaps = 14/295 (4%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           +++Y + R +   +++  ++ +  +       T +++ Y +  ++  AR++F  + + N+
Sbjct: 295 VDMYAKCRRVNEARLVFDRMPLRDVVS----ETSMVSGYAKASSVKAARLMFSNMMERNV 350

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W AL   Y + G ++EAV +F  +  + +    +   ++L AC +L+D+  G + H+ 
Sbjct: 351 VSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTH 410

Query: 205 VLKHSF------GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +LKH F       +D FV +SLIDMY KCG VE  + VF+ M+E+D V+ NAM+ GY Q 
Sbjct: 411 ILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQN 470

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVS 317
           G  TEAL +  E+     +P+ VT   ++S  S +G        FQ M  + G+ P    
Sbjct: 471 GYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDH 530

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           +T ++  L    C DEA +  + M  +   P +    S+L AC    N+  GK +
Sbjct: 531 YTCMVDLLGRAGCLDEANNLIQTMPME---PDAVVWGSLLAACKVHGNITLGKYV 582



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 175/429 (40%), Gaps = 111/429 (25%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV--- 241
           +L  C     +     +H+ ++K  F ++ F+ + L+D+Y KCG +E A+KVFD M    
Sbjct: 25  LLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRN 84

Query: 242 ----------------------------EKDIVAMNAMVSGYVQRGLATEALNLVEE--- 270
                                       E+D  + NAMVSG+ QR    EAL  V +   
Sbjct: 85  TFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHS 144

Query: 271 --------------------------------IGTPRVKPNVVTWNTLISGFSKSGDQVM 298
                                           I   R   +V   + L+  +SK      
Sbjct: 145 EDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVAS 204

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             + F  M  +    ++VSW S+I+    N    +A + F  M++ G  P   T++S+  
Sbjct: 205 AQRAFDDMDVR----NIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVAS 260

Query: 359 ACASAANMRRGKEIHGCAIVM---GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           ACAS + +R G +IH  A VM       DL + +ALVDMYAKC  ++EAR +FD+M  R+
Sbjct: 261 ACASLSAIREGLQIH--ARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRD 318

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
            V+  SM+ G A       A  +F+ M ER   + +S+ A++      G  E   RLF +
Sbjct: 319 VVSETSMVSGYAKASSVKAARLMFSNMMER---NVVSWNALIAGYTQNGENEEAVRLFLL 375

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           ++ +                                 S  P  + +G LL AC N  +++
Sbjct: 376 LKRE---------------------------------SIWPTHYTFGNLLNACANLADLK 402

Query: 536 LAEIAAKHL 544
           L   A  H+
Sbjct: 403 LGRQAHTHI 411


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 260/474 (54%), Gaps = 42/474 (8%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           Q G+I  A+++   +     ++   LIT Y +   ++ A+ LFD++P  N   W  +   
Sbjct: 334 QCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAG 393

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G  +EA+ +  E+H  G+  ++  + S+  AC ++  + TG ++HSL +K     +
Sbjct: 394 YAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFN 453

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           +F  ++LI MY KC ++E A++VF  MV KDIV+ N+ ++  VQ  L  EA N       
Sbjct: 454 SFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARN------- 506

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                   T++ ++S                         D VSWT++IS   H   ++E
Sbjct: 507 --------TFDNMLS------------------------RDDVSWTTIISAYAHAEQSNE 534

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   FK M  +   P S  ++ +L  C S    + G++IH  AI +G++ +L V +AL+ 
Sbjct: 535 AMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLS 452
           MY KCG  +++R +FD M ER+  TWN++I G A HG   EAI+++  ME    L + ++
Sbjct: 595 MYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVT 653

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  +L AC H GLV+ G + F  M + Y + P  EHYACMVDLLGR G +  A + I  M
Sbjct: 654 FVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDM 713

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             EPD  +W ALLGACK H N E+ + AA+ L  +EP +A N ++L+++Y++ G
Sbjct: 714 PIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLG 767



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 197/416 (47%), Gaps = 49/416 (11%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDE 138
           A++  I  Y+     Q+G I  A+ +   + +R       ++T Y     +  AR LF++
Sbjct: 129 AWNAMISCYV-----QNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEK 183

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P+ N+  W  +   Y R   H +A  +F +MH +GL  +     S L A   L ++   
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVL 243

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV-EKAKKVFDEMVE--------------- 242
           E +  L LK  F  D  + ++++++YS+  SV + A K F+ M+E               
Sbjct: 244 ESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSH 303

Query: 243 ----------------KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
                           K I    A+++G  Q G   +A  L E+I     +P VV+WN L
Sbjct: 304 GGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQI----PEPIVVSWNAL 359

Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           I+G+ ++G      +LF  M  +    + +SW  +I+G   N  ++EA    +E+   G 
Sbjct: 360 ITGYMQNGMVNEAKELFDKMPFR----NTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P+ ++++SI  AC++   +  G ++H  A+ +G + +    +AL+ MY KC  +  AR 
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462
           +F +M  ++ V+WNS +     +   DEA   F+ M  R   D +S+T +++A  H
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR---DDVSWTTIISAYAH 528



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 195/439 (44%), Gaps = 66/439 (15%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           H +L VSG +   +   +L         +  AR +FD +P+ +I  W ++  AY   G  
Sbjct: 29  HGELEVSGCSARIRDLGRL-------GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMP 81

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
             A  ++  +    ++                                   T A ++S  
Sbjct: 82  DAARDLYDAISGGNMR-----------------------------------TGAILLSG- 105

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
              Y + G V +A++VFD M+E++ VA NAM+S YVQ G  T A  L + + +     +V
Sbjct: 106 ---YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPS----RDV 158

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
            +WN++++G+  S   V    LF+ M     E ++VSWT +ISG      + +A+D F +
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKM----PERNLVSWTVMISGYGRIENHGKAWDIFCK 214

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK-CG 399
           M  +G  P  +  +S L A     N+   + +   A+  G E D+ + +A++++Y++   
Sbjct: 215 MHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTS 274

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF-TAVLT 458
            +  A   F+ M ERN  TW++MI   ++ G  D AI ++    ER  +  ++  TA++T
Sbjct: 275 VLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----ERDPVKSIACRTALIT 330

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
                G ++  + LF  + E     P    +  ++    + G + EA E+   M    + 
Sbjct: 331 GLAQCGRIDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NT 384

Query: 519 FVWGALLGACKNHGNIELA 537
             W  ++     +G  E A
Sbjct: 385 ISWAGMIAGYAQNGRSEEA 403



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 95/228 (41%), Gaps = 50/228 (21%)

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D+++W S+IS   HN   D A D +  +                    S  NMR G    
Sbjct: 64  DIIAWNSMISAYCHNGMPDAARDLYDAI--------------------SGGNMRTG---- 99

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
                          + L+  Y + G + EAR +FD M ERNTV WN+MI     +G   
Sbjct: 100 ---------------AILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDIT 144

Query: 434 EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
            A  LF+ M  R   D  S+ ++LT  CH   +   + LF  M E+  +      +  M+
Sbjct: 145 MARRLFDAMPSR---DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLV-----SWTVMI 196

Query: 494 DLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACKNHGNIELAE 538
              GR     +A+++   M  E   PD   + + L A K  GN+++ E
Sbjct: 197 SGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLE 244


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/474 (34%), Positives = 260/474 (54%), Gaps = 42/474 (8%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           Q G+I  A+++   +     ++   LIT Y +   ++ A+ LFD++P  N   W  +   
Sbjct: 334 QCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAG 393

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G  +EA+ +  E+H  G+  ++  + S+  AC ++  + TG ++HSL +K     +
Sbjct: 394 YAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFN 453

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           +F  ++LI MY KC ++E A++VF  MV KDIV+ N+ ++  VQ  L  EA N       
Sbjct: 454 SFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARN------- 506

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                   T++ ++S                         D VSWT++IS   H   ++E
Sbjct: 507 --------TFDNMLS------------------------RDDVSWTTIISAYAHAEQSNE 534

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   FK M  +   P S  ++ +L  C S    + G++IH  AI +G++ +L V +AL+ 
Sbjct: 535 AMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLS 452
           MY KCG  +++R +FD M ER+  TWN++I G A HG   EAI+++  ME    L + ++
Sbjct: 595 MYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVT 653

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  +L AC H GLV+ G + F  M + Y + P  EHYACMVDLLGR G +  A + I  M
Sbjct: 654 FVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDM 713

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             EPD  +W ALLGACK H N E+ + AA+ L  +EP +A N ++L+++Y++ G
Sbjct: 714 PIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLG 767



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 197/416 (47%), Gaps = 49/416 (11%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDE 138
           A++  I  Y+     Q+G I  A+ +   + +R       ++T Y     +  AR LF++
Sbjct: 129 AWNAMISCYV-----QNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEK 183

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P+ N+  W  +   Y R   H +A  +F +MH +GL  +     S L A   L ++   
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVL 243

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV-EKAKKVFDEMVE--------------- 242
           E +  L LK  F  D  + ++++++YS+  SV + A K F+ M+E               
Sbjct: 244 ESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSH 303

Query: 243 ----------------KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
                           K I    A+++G  Q G   +A  L E+I     +P VV+WN L
Sbjct: 304 GGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQI----PEPIVVSWNAL 359

Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           I+G+ ++G      +LF  M  +    + +SW  +I+G   N  ++EA    +E+   G 
Sbjct: 360 ITGYMQNGMVNEAKELFDKMPFR----NTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P+ ++++SI  AC++   +  G ++H  A+ +G + +    +AL+ MY KC  +  AR 
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462
           +F +M  ++ V+WNS +     +   DEA   F+ M  R   D +S+T +++A  H
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR---DDVSWTTIISAYAH 528



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 195/439 (44%), Gaps = 66/439 (15%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           H +L VSG +   +   +L         +  AR +FD +P+ +I  W ++  AY   G  
Sbjct: 29  HGELEVSGCSARIRDLGRL-------GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMP 81

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
             A  ++  +    ++                                   T A ++S  
Sbjct: 82  DAARDLYDAISGGNMR-----------------------------------TGAILLSG- 105

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
              Y + G V +A++VFD M+E++ VA NAM+S YVQ G  T A  L + + +     +V
Sbjct: 106 ---YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPS----RDV 158

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
            +WN++++G+  S   V    LF+ M     E ++VSWT +ISG      + +A+D F +
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKM----PERNLVSWTVMISGYGRIENHGKAWDIFCK 214

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK-CG 399
           M  +G  P  +  +S L A     N+   + +   A+  G E D+ + +A++++Y++   
Sbjct: 215 MHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTS 274

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF-TAVLT 458
            +  A   F+ M ERN  TW++MI   ++ G  D AI ++    ER  +  ++  TA++T
Sbjct: 275 VLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----ERDPVKSIACRTALIT 330

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
                G ++  + LF  + E     P    +  ++    + G + EA E+   M    + 
Sbjct: 331 GLAQCGRIDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NT 384

Query: 519 FVWGALLGACKNHGNIELA 537
             W  ++     +G  E A
Sbjct: 385 ISWAGMIAGYAQNGRSEEA 403



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 95/228 (41%), Gaps = 50/228 (21%)

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D+++W S+IS   HN   D A D +  +                    S  NMR G    
Sbjct: 64  DIIAWNSMISAYCHNGMPDAARDLYDAI--------------------SGGNMRTG---- 99

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
                          + L+  Y + G + EAR +FD M ERNTV WN+MI     +G   
Sbjct: 100 ---------------AILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDIT 144

Query: 434 EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
            A  LF+ M  R   D  S+ ++LT  CH   +   + LF  M E+  +      +  M+
Sbjct: 145 MARRLFDAMPSR---DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLV-----SWTVMI 196

Query: 494 DLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACKNHGNIELAE 538
              GR     +A+++   M  E   PD   + + L A K  GN+++ E
Sbjct: 197 SGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLE 244


>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
 gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
          Length = 517

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 265/481 (55%), Gaps = 30/481 (6%)

Query: 100 LHAQLIVSGLA--RLTQIATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALTGAYAR 156
           +H  L+V G+A  RL  +   L++     +  + +AR +FD IP+ ++    A+   YA 
Sbjct: 17  IHGHLVVGGIAAARLQHLRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMVRGYAH 76

Query: 157 RGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
            G   +A  V+  M     L+ + F    +L+AC  L     G ++H  V+K  F  DA+
Sbjct: 77  AGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAY 136

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LI+M++KCG +  A  + DE  E D+VA +A+++G+  RG    A  + +E     
Sbjct: 137 VRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDEC---- 192

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
              ++V WN ++  ++K G+     +LF     +  E DVVSW ++I+G         A 
Sbjct: 193 THKDIVCWNVMLGAYAKHGEMENARELFD----RAPEKDVVSWNTIITGYAAQGMLKHAL 248

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH---------GCAIVMGVEGDLH 386
           + F EM + G+ P  ATI S+L  CA+   +  G+ IH           +IV+G      
Sbjct: 249 EVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVG------ 302

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
             +ALV MYAKCG +  A   F+ M + +  TWNS+I G A HG  ++++  F +M E+R
Sbjct: 303 --NALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKR 360

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
              + +SF  VL AC H GLVE GQ+ F +M+++Y I P   HY+C+VD+LGRAG L EA
Sbjct: 361 IHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEA 420

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           Y ++  M  EP   VW  LLGAC+ HGN+ L ++  + L  +  +++A+ +LL+ +YA++
Sbjct: 421 YAIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASS 480

Query: 566 G 566
           G
Sbjct: 481 G 481



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 152/374 (40%), Gaps = 81/374 (21%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           ++G+ +H  ++  G  +   +   LI  + +C ++  A +L DE  + ++  W A+   +
Sbjct: 117 RAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGH 176

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A RG    A  +F E                   C H                     D 
Sbjct: 177 AARGDMAAARKMFDE-------------------CTH--------------------KDI 197

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
              + ++  Y+K G +E A+++FD   EKD+V+ N +++GY  +G+   AL + +E+   
Sbjct: 198 VCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDEMRAA 257

Query: 275 RVKPN------------------------------------VVTWNTLISGFSKSGDQVM 298
              P+                                    +V  N L+S ++K GD   
Sbjct: 258 GWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVGNALVSMYAKCGDLHT 317

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             + F  M+    + DV +W SVI GL  +   +++   FK+ML +   P   +   +L 
Sbjct: 318 AVEGFNTMK----DTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISFLCVLG 373

Query: 359 ACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNT 416
           AC+ A  +  G++  +      G+E +    S +VDM  + G + EA  +   M  E + 
Sbjct: 374 ACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAIVSNMRCEPSA 433

Query: 417 VTWNSMIFGCANHG 430
           V W +++  C  HG
Sbjct: 434 VVWRTLLGACRTHG 447


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/468 (35%), Positives = 256/468 (54%), Gaps = 28/468 (5%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA++I  GL +   I ++ +T      N  +   +F+ +   +   W      Y+    
Sbjct: 92  VHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYS 151

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
               V++F  M       + F  PS++KAC  +  +  G   H   ++   G D FV++S
Sbjct: 152 VSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTS 211

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID+Y KCG +  A+KVFDEM E+++V+  AM++GY       EA  L +E+     + N
Sbjct: 212 LIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP----EKN 267

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
            V+WN +ISG+ K GD     K+F  M  +    DVV+W+++ISG V             
Sbjct: 268 AVSWNAIISGYVKCGDLRSARKMFDEMPHR--NRDVVAWSALISGNVK------------ 313

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKC 398
                   P    + S++ AC+   ++   K +        ++    HV +AL+DM AKC
Sbjct: 314 --------PDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKC 365

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVL 457
           G +  A  LF++M +R+ +++ SM+ G + HG   +A+ LF++M  E    D ++FT +L
Sbjct: 366 GSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVIL 425

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           TAC   GLV+ G   F  M+  Y I+P  +HYACMVDLLGRAGRL EAYE++K+M  EP 
Sbjct: 426 TACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPH 485

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
              WGALLGACK H +IEL E+ A  L ELEP++A N +LL+++YA A
Sbjct: 486 AGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAA 533



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 138/326 (42%), Gaps = 49/326 (15%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ G   H   +  G+     + T LI  Y +C  I  AR +FDE+ + N+  W A+  
Sbjct: 186 GVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIA 245

Query: 153 AYARRGYHQEAVTVFHEMH----------IQG---------------------------- 174
            YA      EA  +F EM           I G                            
Sbjct: 246 GYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWS 305

Query: 175 ------LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT-DAFVVSSLIDMYSKC 227
                 +K + F++ S++ AC  +  +   + +   V K S     A V+++LIDM +KC
Sbjct: 306 ALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKC 365

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
           GS+++A K+F+EM ++D+++  +M+ G    G   +A++L   +    + P+ V +  ++
Sbjct: 366 GSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVIL 425

Query: 288 SGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           +  S++G        F+ M+    + P    +  ++  L       EA++  K M  +  
Sbjct: 426 TACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVE-- 483

Query: 347 CPTSATISSILPACASAANMRRGKEI 372
            P +    ++L AC    ++  G+ +
Sbjct: 484 -PHAGAWGALLGACKLHCDIELGEVV 508



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 10/206 (4%)

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           T+++IS++L AC + + +   +++H   I  G+  D  + S  + +       S   ++F
Sbjct: 72  TTSSISTLLKACTTTSTL---EQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVF 128

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVE 467
           + +S  +TV WN+ I G + +      + LF +M+    + D  ++ +++ AC  V  V+
Sbjct: 129 NGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVK 188

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            G   F+    +  +         ++DL G+ G +  A ++   M  E ++  W A++  
Sbjct: 189 EGVA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMG-ERNVVSWTAMIAG 246

Query: 528 CKNHGNIELAEIAAKHLSELEPESAA 553
             +  ++    + A+ L +  PE  A
Sbjct: 247 YASFSDL----VEARKLFDEMPEKNA 268


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 183/540 (33%), Positives = 282/540 (52%), Gaps = 84/540 (15%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HAQ ++ GL   T +  KLI  ++    I +AR + D+ P      W +L  AY   G 
Sbjct: 18  IHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPTDFSWNSLIRAYTVHGS 73

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            Q ++ ++ +M     K + F  P VLKAC  L  +  GE+IH+ VL+  FG+D FV +S
Sbjct: 74  PQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNS 133

Query: 220 LIDMYSKC-------------------------------GSVEKAKKVFDEM-VEKDIVA 247
           LIDMY KC                               G VEKA+ +F+EM + +++V 
Sbjct: 134 LIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVC 193

Query: 248 MNAMVSGYVQRGLATEALNLVEE--IGTPRVKPNVVTWNTLISG---------------- 289
             AM++GY + G   E L+L  +  +    V+PN  T   L+S                 
Sbjct: 194 WTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVF 253

Query: 290 -------------------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                              +SK GD     ++F  +  K    ++ SW ++I+G V    
Sbjct: 254 IDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCK----NLPSWNAIITGCVQGGL 309

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG-DLHV-- 387
            +EA D ++ M +Q   P   T+ ++L ACA    +  G+E+H   + +G  G DL+V  
Sbjct: 310 LEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVH---LYLGRNGLDLNVIL 366

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
            +ALVDMYAKCG I +A  +F K SE++   WN+MI G A HG   +++ +F+QM     
Sbjct: 367 ATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGV 426

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + + ++F  VL+AC H GLVE G+  F+ M +K+ + P+ EHYACMVDLLGRAG L EAY
Sbjct: 427 QPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAY 486

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           E+++ M   PD  +WGALL AC+ H N+ELA+  ++ +   +  +    +LL+++YA++G
Sbjct: 487 ELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSG 546



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 185/416 (44%), Gaps = 75/416 (18%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L+    L+ I    +IH+  L H       ++  LID++    S++ A+ V D+    
Sbjct: 4   SLLRTATSLTQI---HQIHAQTLIHGLPLQTHLIPKLIDLH----SIDYARFVLDQTPSP 56

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK-----SGDQV- 297
              + N+++  Y   G    +L L  ++     KP+  T+  ++   S       G+Q+ 
Sbjct: 57  TDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIH 116

Query: 298 --------------------MVSKLFQLMRAKGVEPDV-----VSWTSVISGLVHNFCND 332
                               M  K F+L  A+    D+     VSW S+ISG V     +
Sbjct: 117 THVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVE 176

Query: 333 EAFDTFKEM-----------LSQGFC-----------------------PTSATISSILP 358
           +A D F+EM           +  G+                        P +AT+  +L 
Sbjct: 177 KARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLS 236

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC++  N   G+ +     V  +  +  + +AL+DMY+KCG + +A  +FD +S +N  +
Sbjct: 237 ACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPS 296

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I GC   G  +EAI+L+  M+ +  K + ++   VL+AC  +G +ELG R  ++  
Sbjct: 297 WNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELG-REVHLYL 355

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            +  +         +VD+  + G++ +A  +I   ++E D+ +W A++     HG+
Sbjct: 356 GRNGLDLNVILATALVDMYAKCGKIDDAC-LIFVKTSEKDVALWNAMILGLAYHGD 410



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 134/279 (48%), Gaps = 4/279 (1%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + G+ L   + V+ +   T + T LI  Y++C ++  A  +FD +   N+  W A+    
Sbjct: 245 EVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGC 304

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            + G  +EA+ ++  M  Q +K N   + +VL AC  L  +  G ++H  + ++    + 
Sbjct: 305 VQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNV 364

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            + ++L+DMY+KCG ++ A  +F +  EKD+   NAM+ G    G   ++L +  ++   
Sbjct: 365 ILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRA 424

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDE 333
            V+PN VT+  ++S  + SG        F  M  K G+ P +  +  ++  L       E
Sbjct: 425 GVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKE 484

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           A++  + ML     P S    ++L AC    N+    +I
Sbjct: 485 AYELVQNML---IPPDSIIWGALLSACRIHRNLELADKI 520



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 113/241 (46%), Gaps = 7/241 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H  L  +GL     +AT L+  Y +C  I  A ++F +  + ++  W A+  
Sbjct: 344 ALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMIL 403

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSFG 211
             A  G  ++++ VF +M   G++ N      VL AC H   +  G  +  S+  KH   
Sbjct: 404 GLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLS 463

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGLATEALNLVE 269
                 + ++D+  + G +++A ++   M +  D +   A++S   + R L  E  + + 
Sbjct: 464 PKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNL--ELADKIS 521

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPDVVSWTSVISGLVHN 328
           E       PN+     L + ++ SG    V+++ + ++ K + +P   SW  V  G+VH 
Sbjct: 522 ETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEV-DGVVHR 580

Query: 329 F 329
           F
Sbjct: 581 F 581



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L    +A ++ +  +IH   ++ G+    H+   L+D+++    I  AR + D+     
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPT 57

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
             +WNS+I     HG    ++ L+ +M     K  + +F  VL AC  +G V  G+++  
Sbjct: 58  DFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT 117

Query: 475 MMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            +    ++   ++ + C  ++D+  +  RL  A      M    D   W +++      G
Sbjct: 118 HV---LRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFR-DEVSWNSIISGYVQWG 173

Query: 533 NIELAE 538
            +E A 
Sbjct: 174 QVEKAR 179


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 272/511 (53%), Gaps = 50/511 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+  K +HA L+  GL   T +  K++ F     N +++  + D+  + NI  +  +   
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
                  QE++ ++H M  +GL  + F  P VLKAC  + D   G K+HSLV+K     D
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           AFV  SLI++Y+KCG ++ A KVFD++ +K+  +  A +SGYV  G   EA+++   +  
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLE 202

Query: 274 PRVKPNVVTWNTLISGFSKSGD-------------QVMVSKLF-------------QLMR 307
             ++P+  +   ++S   ++GD               MV  +F              + R
Sbjct: 203 MGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMER 262

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V     E ++VSW+S+I G   N    EA D F +ML++G  P    +  +L +CA 
Sbjct: 263 ARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCAR 322

Query: 363 ---------AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
                    A+N+  G E    +++          +AL+DMYAKCG +  A  +F  M +
Sbjct: 323 LGALELGDWASNLINGNEFLDNSVL---------GTALIDMYAKCGRMDRAWEVFRGMRK 373

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           ++ V WN+ I G A  G+  +A+ LF QME+   K D  +F  +L AC H GLVE G+R 
Sbjct: 374 KDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRY 433

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           FN M+  + + P  EHY CMVDLLGRAG L EA+++IK+M  E +  VWGALLG C+ H 
Sbjct: 434 FNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHR 493

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           + +L E+  K L  LEP  + N +LL+++YA
Sbjct: 494 DTQLVEVVLKKLIALEPWHSGNYVLLSNIYA 524



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 184/408 (45%), Gaps = 47/408 (11%)

Query: 61  IEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQS--GKILHAQLIVSGLARLTQIATK 118
           IE ++ M    R   LSP +++    +    R L S  G  +H+ ++ +G      +   
Sbjct: 93  IEIYHSM----RKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKIS 148

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           LI  YT+C  I +A  +FD+IP  N   W A    Y   G  +EA+ +F  +   GL+ +
Sbjct: 149 LINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPD 208

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F +  VL AC    D+ +GE I   + ++    + FV ++L+D Y KCG++E+A+ VFD
Sbjct: 209 SFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFD 268

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-------------------- 278
            M+EK+IV+ ++M+ GY   GL  EAL+L  ++    +KP                    
Sbjct: 269 GMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALEL 328

Query: 279 ---------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                          N V    LI  ++K G      ++F+ MR K    D V W + IS
Sbjct: 329 GDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKK----DRVVWNAAIS 384

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVE 382
           GL  +    +A   F +M   G  P   T   +L AC  A  +  G+   +    V  + 
Sbjct: 385 GLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLT 444

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANH 429
            ++     +VD+  + G + EA  L   M  E N + W +++ GC  H
Sbjct: 445 PEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLH 492


>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
 gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 281/544 (51%), Gaps = 60/544 (11%)

Query: 25  YSIRRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSER 84
           Y+ R +YF   S     +  S  +SDA +P  + I I    K       F L   A    
Sbjct: 98  YTSREMYFDAFSLFLSWIGSSCYSSDAARP--DSISISCVLKALSGCDDFWLGSLA---- 151

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
                        + +H  +I  G      +   +IT+YT+C NI  AR +FDE+ + ++
Sbjct: 152 -------------RQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDV 198

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
             W ++   Y++ G  ++   ++  M      K N   + SV +ACG  SD+  G ++H 
Sbjct: 199 VSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHK 258

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            ++++    D  + +++I  Y+KCGS++ A+ +FDEM EKD V   A++SGY+  GL  E
Sbjct: 259 KMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKE 318

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           A+                                    LF  M + G+     +W ++IS
Sbjct: 319 AM-----------------------------------ALFSEMESIGLS----TWNAMIS 339

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           GL+ N  ++E  ++F+EM+  G  P + T+SS+LP+   ++N++ GKEIH  AI  G + 
Sbjct: 340 GLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADN 399

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +++V ++++D YAK GF+  A+ +FD   +R+ + W ++I   A HG  D A  LF+QM+
Sbjct: 400 NIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQ 459

Query: 444 -ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
               K D ++ TAVL+A  H G  ++ Q +F+ M  KY I P  EHYACMV +L RAG+L
Sbjct: 460 CLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKL 519

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
           ++A E I  M  +P   VWGALL      G++E+A  A   L E+EPE+  N  ++ +LY
Sbjct: 520 SDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTIMANLY 579

Query: 563 ANAG 566
             AG
Sbjct: 580 TQAG 583


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 279/485 (57%), Gaps = 33/485 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT--GAYARR 157
           LHAQ++  GL    + A +L++ Y   + +  +R +FD I   +   ++A T   AYA  
Sbjct: 371 LHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALG 430

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG--EKIHSLVLKHSFGTDAF 215
           G  ++A+  F  M     +++ F    ++KA   LS  G      +HS V+K     D F
Sbjct: 431 GAPRDALAAFSAMP----RRDSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTF 483

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LID YSK G    A+KVFDEM E+D+V+ N  ++  V+ G    A  L +E+    
Sbjct: 484 VGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEM---- 539

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
            + + V+WNT++ G++K+G+     +LFQ M     E +VVSW++++SG       + A 
Sbjct: 540 PEKDTVSWNTILDGYTKAGEVEAAFELFQRM----PERNVVSWSTMVSGYCKKGDLEMAR 595

Query: 336 DTFKEMLSQGFCPTS------------ATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
             F +M  +     +            A + SIL ACA + ++  GK IH       +  
Sbjct: 596 VIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR 655

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
             HV +AL+DM+ KCG ++ A  +FD  + ++++V+WNS+I G A HG+ D+A+ELF QM
Sbjct: 656 STHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQM 715

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           +++    D ++   VL+AC H+G V+ G+R F+ M+  Y IMP+ EHY CM+DLLGR G 
Sbjct: 716 KQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGL 775

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           + EA ++IK+M  EP+  +WG+LL AC+ H N+E AEIA   LS+L+P +A N  +L+++
Sbjct: 776 IKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNI 835

Query: 562 YANAG 566
           YA AG
Sbjct: 836 YAEAG 840



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 153/397 (38%), Gaps = 93/397 (23%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           + +H+ ++  G    T +   LI  Y++      AR +FDE+P+ ++  W     A  R 
Sbjct: 467 RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE 526

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G    A  +F EM                            EK            D    
Sbjct: 527 GELAGARKLFDEMP---------------------------EK------------DTVSW 547

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++++D Y+K G VE A ++F  M E+++V+ + MVSGY ++G     L +   I      
Sbjct: 548 NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKG----DLEMARVIFDKMPG 603

Query: 278 PNVVTWN----------------TLISGFSKSGDQVMVSKLFQLMRAKG----------- 310
            N+VTW                 ++++  ++SG   +  ++ + +R +            
Sbjct: 604 KNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 663

Query: 311 ---------------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
                                V+ D VSW S+I G   +   D+A + F +M  QGF P 
Sbjct: 664 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 723

Query: 350 SATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           + T+ ++L AC     +  G+          G+   +     ++D+  + G I EA  L 
Sbjct: 724 AVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLI 783

Query: 409 DKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
             M  E N V W S++  C  H   + A    N++ +
Sbjct: 784 KSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSK 820


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/502 (32%), Positives = 261/502 (51%), Gaps = 32/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G++LH   + SGL     +++ LI  Y +   I     +F ++ K N+  W A+      
Sbjct: 176 GELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVH 235

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            GY+ EA+  F EM I  +  +       LKA    S +  G+ IH+  +K  F   +FV
Sbjct: 236 AGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 295

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L  MY+KCG  +   ++F++M   D+V+   +++ YVQ+G    A+   + +    V
Sbjct: 296 INTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNV 355

Query: 277 KPNVVTWNTLISG-----FSKSGDQV--------------MVSKLFQLMRAKGV------ 311
            PN  T+  +IS       +K G+Q+              + + +  L    G+      
Sbjct: 356 SPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASL 415

Query: 312 ------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                   D++SW+++I+         EAFD    M  +G  P    +SS+L  C S A 
Sbjct: 416 VFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMAL 475

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + +GK++H   + +G++ +  V SAL+ MY+KCG + EA  +F+ M   N ++W +MI G
Sbjct: 476 LEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMING 535

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HGY  EAI LF ++     K D+++F  VLTAC H G+V+LG   F +M  +Y+I P
Sbjct: 536 YAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISP 595

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             EHY C++DLL RAGRL+EA  MI++M    D  VW  LL +C+ HG+++     A+ L
Sbjct: 596 SKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQL 655

Query: 545 SELEPESAANNMLLTDLYANAG 566
             L+P SA  ++ L ++YA  G
Sbjct: 656 LRLDPNSAGTHIALANIYAAKG 677



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 214/442 (48%), Gaps = 51/442 (11%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACG 190
           +R +FD++   +   W  L   Y       EA+ +F  M +Q GL+++ F+I   LKACG
Sbjct: 109 SRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACG 168

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
              +I  GE +H   +K       FV S+LIDMY K G +E+  +VF +M ++++V+  A
Sbjct: 169 LGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTA 228

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------------------------- 283
           +++G V  G   EAL    E+   +V  +  T+                           
Sbjct: 229 IIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQG 288

Query: 284 --------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                   NTL + ++K G    V +LF+ M+     PDVVSWT++I+  V     + A 
Sbjct: 289 FDESSFVINTLATMYNKCGKADYVMRLFEKMKM----PDVVSWTTLITTYVQKGEEEHAV 344

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + FK M      P   T ++++ ACA+ A  + G++IHG  + +G+   L V +++V +Y
Sbjct: 345 EAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLY 404

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           +K G +  A  +F  ++ ++ ++W+++I   +  GY  EA +  + M  E  K +  + +
Sbjct: 405 SKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALS 464

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEAYEMIK 510
           +VL+ C  + L+E G+++       + +    +H    ++ ++ +  + G + EA ++  
Sbjct: 465 SVLSVCGSMALLEQGKQV-----HAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFN 519

Query: 511 TMSTEPDLFVWGALLGACKNHG 532
            M    ++  W A++     HG
Sbjct: 520 GMKIN-NIISWTAMINGYAEHG 540



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 165/394 (41%), Gaps = 71/394 (18%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +H Q I  G    + +   L T Y +C    +   LF+++   ++  W  L   
Sbjct: 274 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITT 333

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y ++G  + AV  F  M    +  N +   +V+ AC +L+    GE+IH  VL+      
Sbjct: 334 YVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDA 393

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +S++ +YSK G ++ A  VF  +  KDI++ + +++ Y Q G A EA + +  +  
Sbjct: 394 LSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRR 453

Query: 274 PRVKPN-----------------------------------VVTWNTLISGFSKSGDQVM 298
              KPN                                    +  + LIS +SK G    
Sbjct: 454 EGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEE 513

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            SK+F  M+      +++SWT++I+G   +  + EA + F+++ S G  P   T   +L 
Sbjct: 514 ASKIFNGMKIN----NIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLT 569

Query: 359 ACASAANMRRG----------------KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           AC+ A  +  G                KE +GC               ++D+  + G +S
Sbjct: 570 ACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGC---------------IIDLLCRAGRLS 614

Query: 403 EARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEA 435
           EA  +   M    + V W++++  C  HG  D  
Sbjct: 615 EAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRG 648



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 180/405 (44%), Gaps = 47/405 (11%)

Query: 193 SDIGTGEKIHSLVLK---HSFGTDAFVVSSLIDMYS------KCGSVEKAKKVFDEMVEK 243
           S  GT  +   L+ +        +A+ V +++++ S      K G + K++ +FD+M  +
Sbjct: 60  SSPGTATECRELIQQAKQEQLAQNAYSVHNMLELNSELKQLVKQGQLCKSRYMFDKMTHR 119

Query: 244 DIVAMNAMVSGYVQRGLATEAL----NLVEEIGTPRVKPNV------------VTWNTLI 287
           D ++   +++GYV    + EAL    N+  + G  R +  +            + +  L+
Sbjct: 120 DEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELL 179

Query: 288 SGFS-KSG------------DQVM-VSKLFQLMRA--KGVEPDVVSWTSVISGLVHNFCN 331
            GFS KSG            D  M V K+ Q  R   K  + +VVSWT++I+GLVH   N
Sbjct: 180 HGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYN 239

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            EA   F EM        S T +  L A A ++ +  GK IH   I  G +    V + L
Sbjct: 240 MEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTL 299

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
             MY KCG       LF+KM   + V+W ++I      G  + A+E F +M +     + 
Sbjct: 300 ATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNK 359

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +F AV++AC ++ + + G+++   +  +  ++        +V L  ++G L  A  +  
Sbjct: 360 YTFAAVISACANLAIAKWGEQIHGHVL-RLGLVDALSVANSIVTLYSKSGLLKSASLVFH 418

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
            + T  D+  W  ++      G    A+ A  +LS +  E    N
Sbjct: 419 GI-TRKDIISWSTIIAVYSQGG---YAKEAFDYLSWMRREGPKPN 459



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 28/256 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +HA ++  G+     + + LI+ Y++C ++  A  +F+ +   NI  W A+   
Sbjct: 476 LEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMING 535

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA  GY QEA+ +F ++   GLK +      VL AC H   +  G     L+      T+
Sbjct: 536 YAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLM------TN 589

Query: 214 AFVVSS-------LIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAM----VSGYVQRGL 260
            + +S        +ID+  + G + +A+ +   M     D+V    +    V G V RG 
Sbjct: 590 EYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGR 649

Query: 261 ATEALNLVEEIGTPRVKPNVV-TWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPDVVSW 318
            T    L       R+ PN   T   L + ++  G     + + +LM++KGV +    SW
Sbjct: 650 WTAEQLL-------RLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSW 702

Query: 319 TSVISGLVHNFCNDEA 334
            +V   L      D+A
Sbjct: 703 VNVNDKLNAFVAGDQA 718


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 167/490 (34%), Positives = 271/490 (55%), Gaps = 40/490 (8%)

Query: 115 IATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           +   LI  + + +N   +A  +FD++ + N+  W  +     + G+ +EA+  F +M + 
Sbjct: 204 VGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLS 263

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---GSV 230
           G + + F + SV  AC  L ++  G ++HS  ++     D  V  SL+DMY+KC   GSV
Sbjct: 264 GFESDKFTLSSVFSACAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSV 321

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQR-GLATEALNLVEEIGTP-RVKPNVVTWNTLIS 288
           +  +KVFD M +  +++  A+++GY+Q   LATEA+NL  E+ T   V+PN  T+++   
Sbjct: 322 DDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFK 381

Query: 289 GFS-----KSGDQV---------------------MVSKLFQLMRAKGV-----EPDVVS 317
                   + G QV                     M  K  ++  A+       E ++VS
Sbjct: 382 ACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVS 441

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           + + + G   N   + AF+   E+  +    ++ T +S+L   A+  ++R+G++IH   +
Sbjct: 442 YNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVL 501

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
            +G+  +  V +AL+ MY+KCG I  A  +F  M  RN ++W SMI G A HG+ +  +E
Sbjct: 502 KLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLE 561

Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
            FNQM +E  K + +++ A+L+AC HVGLV  G R FN M E +KI P+ EHYACMVDLL
Sbjct: 562 TFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLL 621

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
            RAG L +A+E I TM  + D+ VW   LGAC+ H N EL ++AA+ + E +P   A  +
Sbjct: 622 CRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYI 681

Query: 557 LLTDLYANAG 566
            L+++YA+AG
Sbjct: 682 QLSNIYASAG 691



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 130/523 (24%), Positives = 248/523 (47%), Gaps = 51/523 (9%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           +    +S  ++  IR R  + GK++HA+LI   +   + +   LI+ Y++  ++  A+ +
Sbjct: 60  MDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDV 119

Query: 136 FDEIP---KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           F+ +    K ++  W A+   +   G   +A+ +F E    GL  N +   +V++AC + 
Sbjct: 120 FETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNS 179

Query: 193 SDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEKDIVAMNA 250
             +G G  I   ++K   F +D  V  SLIDM+ K   S E A KVFD+M E ++V    
Sbjct: 180 DFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTL 239

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----------------KSG 294
           M++  +Q G   EA+    ++     + +  T +++ S  +                +SG
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIRSG 299

Query: 295 --DQVMVS--KLFQLMRAKGVEPD------------VVSWTSVISGLVHNFCN--DEAFD 336
             D V  S   ++    A G   D            V+SWT++I+G + N CN   EA +
Sbjct: 300 LADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQN-CNLATEAIN 358

Query: 337 TFKEMLSQGFC-PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
            F EM++QG   P   T SS   AC + ++ R GK++ G A   G+  +  V ++++ M+
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMF 418

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
            KC  + +ART F+ +SE+N V++N+ + G   +   + A EL +++ ER+  +   +F 
Sbjct: 419 VKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFA 478

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTM 512
           ++L+   +VG +  G+++ + +    K+        C  ++ +  + G +  A  +   M
Sbjct: 479 SLLSGVANVGSLRKGEQIHSQV---LKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLM 535

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
               ++  W +++     HG    AE   +  +++  E    N
Sbjct: 536 DNR-NVISWTSMITGFAKHG---FAERVLETFNQMTKEGVKPN 574



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 168/378 (44%), Gaps = 48/378 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIAL 150
           L  G+ LH+  I SGLA    +   L+  Y +C    ++   R +FD +   ++  W AL
Sbjct: 285 LSLGRQLHSWAIRSGLA--DDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTAL 342

Query: 151 TGAYARR-GYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
              Y +      EA+ +F EM  QG ++ N F   S  KACG++SD   G+++     K 
Sbjct: 343 ITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKR 402

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
              +++ V +S+I M+ KC  +E A+  F+ + EK++V+ N  + G  +      A  L+
Sbjct: 403 GLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELL 462

Query: 269 EEIGTPRVKPNVVTWNTLISG-----------------------------------FSKS 293
            EI    +  +  T+ +L+SG                                   +SK 
Sbjct: 463 SEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKC 522

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G     S++F LM  +    +V+SWTS+I+G   +   +   +TF +M  +G  P   T 
Sbjct: 523 GSIDTASRVFSLMDNR----NVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTY 578

Query: 354 SSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
            +IL AC+    +  G +  +       ++  +   + +VD+  + G +++A    + M 
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 413 -ERNTVTWNSMIFGCANH 429
            + + + W + +  C  H
Sbjct: 639 FQADVLVWRTFLGACRVH 656



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 152/331 (45%), Gaps = 23/331 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +       GLA  + ++  +I+ + +C  +  AR  F+ + + N+  +        R
Sbjct: 392 GKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCR 451

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               + A  +  E+  + L  + F   S+L    ++  +  GE+IHS VLK     +  V
Sbjct: 452 NLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPV 511

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LI MYSKCGS++ A +VF  M  +++++  +M++G+ + G A   L    ++    V
Sbjct: 512 CNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGV 571

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQ----LMRAKGVEPDVVSWTSVISGLVHNFCND 332
           KPN VT+  ++S  S  G   +VS+ ++    +     ++P +  +  ++  L       
Sbjct: 572 KPNEVTYVAILSACSHVG---LVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLT 628

Query: 333 EAFDTFKEMLSQGFCPTSATI---SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           +AF+    M      P  A +    + L AC   +N   GK     A    +E D +  +
Sbjct: 629 DAFEFINTM------PFQADVLVWRTFLGACRVHSNTELGK----LAARKILEFDPNEPA 678

Query: 390 A---LVDMYAKCGFISEARTLFDKMSERNTV 417
           A   L ++YA  G   E+  +  KM ERN V
Sbjct: 679 AYIQLSNIYASAGKWEESTEMRRKMKERNLV 709



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 75/149 (50%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ G+ +H+Q++  GL+    +   LI+ Y++C +I  A  +F  +   N+  W ++  
Sbjct: 489 SLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMIT 548

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A+ G+ +  +  F++M  +G+K N     ++L AC H+  +  G +  +S+   H   
Sbjct: 549 GFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIK 608

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                 + ++D+  + G +  A +  + M
Sbjct: 609 PKMEHYACMVDLLCRAGLLTDAFEFINTM 637


>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
 gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
 gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 559

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/518 (33%), Positives = 284/518 (54%), Gaps = 36/518 (6%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLT-QIATKLITFYTECQNIHHARMLFDEI 139
           YS  ++  I   A + GK +H ++  +  +     ++TKL+ FY    ++  AR +FD +
Sbjct: 14  YSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGM 73

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P  ++  W A+   YAR G  +EA+ +F  M   G + N F   S   AC       +GE
Sbjct: 74  PHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGE 133

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H+   K  F  D FV S+L+DM+ +CGSVE A+++F EM +KD+V+ NA++ G+V+RG
Sbjct: 134 QVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERG 193

Query: 260 LATEALNLVEEI-------------------GTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
              +AL L   +                   G   V  NV   ++ I       ++V++ 
Sbjct: 194 HDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIG 253

Query: 301 KLFQ-------LMRAKGV-----EPDVVSWTSVISG--LVHNFCNDEAFDTFKEMLSQGF 346
            L         +  A+ +     EPD+VS T++ISG  +  N+  D A + F ++  +G 
Sbjct: 254 SLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSED-AMELFCKIHRKGL 312

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
                 +SS+L  CAS A+ R G +IH         GD+ + +ALVDMYAK G  S+A+ 
Sbjct: 313 WIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSDAKR 372

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGL 465
            FD+M  RN ++W S+I  C  +G  ++A+ LFN+M E+  + + ++F ++L+AC H GL
Sbjct: 373 AFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGL 432

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
              G   F  M  +Y I PR EHY+  +DLL R G+L +A+++++  + +P+  + GA+L
Sbjct: 433 TNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAML 492

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           GACK HGN+ L E AAK+L  ++P S+ N  +L ++YA
Sbjct: 493 GACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYA 530



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 4/186 (2%)

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHG-CAIVMGVEGDLHVRSALVDMYAKCGF 400
           L  G  PT+   SS+L  C S+   R+GK +HG  A       DLH+ + LV  YA+ G 
Sbjct: 3   LLMGAKPTAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGD 62

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTA 459
           ++ AR +FD M  R+ V+W +M+ G A +G   EA+ELF  M     + +  ++ +  +A
Sbjct: 63  VAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASA 122

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C   G    G+++ +    K +        + ++D+  R G + +A ++   M  + D+ 
Sbjct: 123 CAGAGCARSGEQV-HACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKK-DVV 180

Query: 520 VWGALL 525
            W AL+
Sbjct: 181 SWNALI 186


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 261/505 (51%), Gaps = 32/505 (6%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D  L  G+ LHA     G A   +I   L+  Y +C +I  A   F E    N+  W  +
Sbjct: 362 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 421

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             AY      + +  +F +M I+ +  N +  PS+LK C  L D+  GE+IHS ++K +F
Sbjct: 422 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 481

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +A+V S LIDMY+K G ++ A  +      KD+V+   M++GY Q     +AL    +
Sbjct: 482 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 541

Query: 271 IGTPRVKPNVVTWNTLISGFS-----KSGDQVMVSKL---------FQ------LMRAKG 310
           +    ++ + V     +S  +     K G Q+              FQ        R   
Sbjct: 542 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 601

Query: 311 VEP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           +E            D ++W +++SG   +  N+EA   F  M  +G    + T  S + A
Sbjct: 602 IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 661

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            +  ANM++GK++H      G + +  V +AL+ MYAKCG IS+A   F ++S +N V+W
Sbjct: 662 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 721

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N++I   + HG+  EA++ F+QM     + +H++   VL+AC H+GLV+ G   F  M  
Sbjct: 722 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 781

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +Y + P+ EHY C+VD+L RAG L+ A E I+ M  +PD  VW  LL AC  H N+E+ E
Sbjct: 782 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 841

Query: 539 IAAKHLSELEPESAANNMLLTDLYA 563
            AA HL ELEPE +A  +LL++LYA
Sbjct: 842 FAAHHLLELEPEDSATYVLLSNLYA 866



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 238/489 (48%), Gaps = 36/489 (7%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P A+S  +    +  +L+ G+ LH  ++  G +  T +   L++ Y    N+  A  +F
Sbjct: 247 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIF 306

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
             + + +   +  L    ++ GY ++A+ +F  MH+ GL+ +   + S++ AC     + 
Sbjct: 307 SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLF 366

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G+++H+   K  F ++  +  +L+++Y+KC  +E A   F E   +++V  N M+  Y 
Sbjct: 367 RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG 426

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQV-------------- 297
                  +  +  ++    + PN  T+ +++      G  + G+Q+              
Sbjct: 427 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAY 486

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                  M +KL +L  A  +       DVVSWT++I+G      +D+A  TF++ML +G
Sbjct: 487 VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 546

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
                  +++ + ACA    ++ G++IH  A V G   DL  ++ALV +Y++CG I E+ 
Sbjct: 547 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY 606

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT--AVLTACCHV 463
             F++    + + WN+++ G    G  +EA+ +F +M  R+ +D+ +FT  + + A    
Sbjct: 607 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRM-NREGIDNNNFTFGSAVKAASET 665

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G+++  ++  K      TE    ++ +  + G +++A +    +ST+ ++  W A
Sbjct: 666 ANMKQGKQVHAVIT-KTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV-SWNA 723

Query: 524 LLGACKNHG 532
           ++ A   HG
Sbjct: 724 IINAYSKHG 732



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 219/474 (46%), Gaps = 42/474 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+++  GL   T +   LI  Y+    +  AR +FD +   +   W+A+    ++   
Sbjct: 169 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 228

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
             EA+ +F +M++ G+    +   SVL AC  +  +  GE++H LVLK  F +D +V ++
Sbjct: 229 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 288

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ +Y   G++  A+ +F  M ++D V  N +++G  Q G   +A+ L + +    ++P+
Sbjct: 289 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 348

Query: 280 VVTWNTLISGFSKSG--------------------DQVMVSKLFQLMRAKGVE------- 312
             T  +L+   S  G                    +++  + L    +   +E       
Sbjct: 349 SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFL 408

Query: 313 ----PDVVSWTS--VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                +VV W    V  GL+ +  N  +F  F++M  +   P   T  SIL  C    ++
Sbjct: 409 ETEVENVVLWNVMLVAYGLLDDLRN--SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 466

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G++IH   I    + + +V S L+DMYAK G +  A  +  + + ++ V+W +MI G 
Sbjct: 467 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 526

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM--MQEKYKIM 483
             + + D+A+  F QM +R  + D +  T  ++AC  +  ++ GQ++     +      +
Sbjct: 527 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 586

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           P       +V L  R G++ E+Y +    +   D   W AL+   +  GN E A
Sbjct: 587 PFQN---ALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEA 636



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 220/473 (46%), Gaps = 45/473 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ LH+Q++  GL     ++ KL  FY    +++ A  +FDE+P+  I  W  +  
Sbjct: 60  SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIK 119

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GHLSDIGTGEKIHSLVLKHSFG 211
             A R    E   +F  M  + +  N      VL+AC G        E+IH+ +L     
Sbjct: 120 ELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLR 179

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V + LID+YS+ G V+ A++VFD +  KD  +  AM+SG  +     EA+ L  ++
Sbjct: 180 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM 239

Query: 272 GTPRVKPNVVTWNTLISGFSK-----SGDQV------------------MVSKLFQLMRA 308
               + P    +++++S   K      G+Q+                  +VS  F L   
Sbjct: 240 YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNL 299

Query: 309 KGVE--------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
              E         D V++ ++I+GL      ++A + FK M   G  P S T++S++ AC
Sbjct: 300 ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 359

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           ++   + RG+++H     +G   +  +  AL+++YAKC  I  A   F +    N V WN
Sbjct: 360 SADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN 419

Query: 421 SMIFGCANHGYCDE---AIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            M+     +G  D+   +  +F QM+ E    +  ++ ++L  C  +G +ELG+++ + +
Sbjct: 420 VMLVA---YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 476

Query: 477 QEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
               K   +   Y C  ++D+  + G+L  A++++   + + D+  W  ++  
Sbjct: 477 ---IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 525



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 196/458 (42%), Gaps = 78/458 (17%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           +++   LK  G L +   G K+HS +LK    ++  +   L D Y   G +  A KVFDE
Sbjct: 49  WLLEGCLKTNGSLDE---GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 105

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN-------------------- 279
           M E+ I   N M+     R L  E   L   + +  V PN                    
Sbjct: 106 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDV 165

Query: 280 ----------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                            V  N LI  +S++G   +  ++F  +R K    D  SW ++IS
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK----DHSSWVAMIS 221

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           GL  N C  EA   F +M   G  PT    SS+L AC    ++  G+++HG  + +G   
Sbjct: 222 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 281

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           D +V +ALV +Y   G +  A  +F  MS+R+ VT+N++I G +  GY ++A+ELF +M 
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 341

Query: 444 -ERKKLDHLSFTAVLTACCHVGLVELGQR-------------------LFNMMQE----- 478
            +  + D  +  +++ AC   G +  GQ+                   L N+  +     
Sbjct: 342 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 401

Query: 479 ---KYKIMPRTEH---YACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACK 529
               Y +    E+   +  M+   G    L  ++ + + M  E   P+ + + ++L  C 
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 461

Query: 530 NHGNIELAEIAAKHLSELEPE-SAANNMLLTDLYANAG 566
             G++EL E     + +   + +A    +L D+YA  G
Sbjct: 462 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 499



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 23/370 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL+ G+ +HAQ  VSG +        L+T Y+ C  I  + + F++    +   W AL 
Sbjct: 565 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 624

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + + G ++EA+ VF  M+ +G+  N F   S +KA    +++  G+++H+++ K  + 
Sbjct: 625 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD 684

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++LI MY+KCGS+  A+K F E+  K+ V+ NA+++ Y + G  +EAL+  +++
Sbjct: 685 SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM 744

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSK---LFQLMRAK-GVEPDVVSWTSVISGLVH 327
               V+PN VT   ++S  S  G   +V K    F+ M ++ G+ P    +  V+  L  
Sbjct: 745 IHSNVRPNHVTLVGVLSACSHIG---LVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTR 801

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                 A +  +EM  +   P +    ++L AC    NM  G E     ++     D   
Sbjct: 802 AGLLSRAKEFIQEMPIK---PDALVWRTLLSACVVHKNMEIG-EFAAHHLLELEPEDSAT 857

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNT-----VTW-------NSMIFGCANHGYCDEA 435
              L ++YA             KM E+        +W       +S   G  NH   DE 
Sbjct: 858 YVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEI 917

Query: 436 IELFNQMEER 445
            E F  + +R
Sbjct: 918 HEYFQDLTKR 927



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 161/386 (41%), Gaps = 41/386 (10%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   ++  IR   L+ G+ +H+Q+I +       + + LI  Y +   +  A  +     
Sbjct: 453 YPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 512

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             ++  W  +   Y +  +  +A+T F +M  +G++ +   + + + AC  L  +  G++
Sbjct: 513 GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ 572

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IH+      F +D    ++L+ +YS+CG +E++   F++    D +A NA+VSG+ Q G 
Sbjct: 573 IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGN 632

Query: 261 ATEALNLVEEIGTPRVKPNVVTW-----------------------------------NT 285
             EAL +   +    +  N  T+                                   N 
Sbjct: 633 NEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNA 692

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           LIS ++K G      K F  +  K    + VSW ++I+    +    EA D+F +M+   
Sbjct: 693 LISMYAKCGSISDAEKQFLEVSTK----NEVSWNAIINAYSKHGFGSEALDSFDQMIHSN 748

Query: 346 FCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
             P   T+  +L AC+    + +G           G+         +VDM  + G +S A
Sbjct: 749 VRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRA 808

Query: 405 RTLFDKMS-ERNTVTWNSMIFGCANH 429
           +    +M  + + + W +++  C  H
Sbjct: 809 KEFIQEMPIKPDALVWRTLLSACVVH 834


>gi|413946759|gb|AFW79408.1| hypothetical protein ZEAMMB73_086527 [Zea mays]
          Length = 865

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/425 (39%), Positives = 248/425 (58%), Gaps = 9/425 (2%)

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W A+    AR G  +EA  V   M  +G+  +   + S+LK+   L  +  G + H   L
Sbjct: 280 WNAVLSGCARHGRDREAFGVVRSMLERGIPPDSSSMSSLLKSVASLGLLAHGMEAHCFFL 339

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           +H    D +  ++ +DMY+KCG +E A+KVFD +  ++I   N++V+GY   G    AL+
Sbjct: 340 RHRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTLELRNITTWNSLVAGYSNAGQFDHALD 399

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           LVEE+   R+ P++ TWN LISG+S +G       L + M+A G+ P+VVSWTS+ISG  
Sbjct: 400 LVEEMKRNRLDPDITTWNGLISGYSMNGRSSQAVLLLRQMKAIGLTPNVVSWTSLISGSC 459

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI-VMGVEGDL 385
           HN   +++F  F EM      P+  T+S +L ACA  A + +GKE+H  A+     + D+
Sbjct: 460 HNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLAKGKELHCFALRRRAYDRDM 519

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
            V +AL+DMY+K G ++ A  +F+++  E+N V+WN+M+ G A HG   EAI LF+ M  
Sbjct: 520 VVATALIDMYSKSGNLASATRIFERIQEEKNLVSWNAMLTGLAAHGQGREAIALFDDMCS 579

Query: 445 RK-------KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
                    K D ++FTA+LTAC  + L+  G   F+ M+ +Y + P  E+YACMVDLL 
Sbjct: 580 ASAGAGAGLKPDSITFTALLTACRSMELITEGWDYFDAMESRYGVTPTVENYACMVDLLA 639

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           R G L EA + I     +    +WGALL  C  HGN+ LAE AA+ L +LEP ++AN + 
Sbjct: 640 RCGYLDEATDFINRSPFKSAASLWGALLTGCVVHGNLALAEAAARKLFKLEPYNSANYLQ 699

Query: 558 LTDLY 562
           +  LY
Sbjct: 700 MVSLY 704



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 194/482 (40%), Gaps = 121/482 (25%)

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSL 220
           +A+  F EM  +G+  + +     L ACG       G+ +H+   K         V   L
Sbjct: 156 DAIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAAKAGHVAAHPLVPGFL 215

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI---GTPRVK 277
             MY++   V  A++V  E  +   VA N +V+   + GL  +AL+L E +   G     
Sbjct: 216 AGMYAESADVGAARRVL-ETEDAPPVAWNVVVACCARLGLVDDALDLAERMARSGPVEAS 274

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
           P++ TWN ++SG ++ G                                    + EAF  
Sbjct: 275 PSLATWNAVLSGCARHGR-----------------------------------DREAFGV 299

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            + ML +G  P S+++SS+L + AS   +  G E H   +   +E D++  +A VDMYAK
Sbjct: 300 VRSMLERGIPPDSSSMSSLLKSVASLGLLAHGMEAHCFFLRHRLEPDVYTGTAFVDMYAK 359

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH------- 450
           CG +  A+ +FD +  RN  TWNS++ G +N G  D A++L  +M +R +LD        
Sbjct: 360 CGRLEYAQKVFDTLELRNITTWNSLVAGYSNAGQFDHALDLVEEM-KRNRLDPDITTWNG 418

Query: 451 ------------------------------LSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
                                         +S+T++++  CH G  E     FN MQ+ +
Sbjct: 419 LISGYSMNGRSSQAVLLLRQMKAIGLTPNVVSWTSLISGSCHNGDYEDSFYFFNEMQKDH 478

Query: 481 ------------------KIMPRTEHYAC-----------------MVDLLGRAGRLAEA 505
                              ++ + +   C                 ++D+  ++G LA A
Sbjct: 479 VQPSVVTMSVLLRACAGLALLAKGKELHCFALRRRAYDRDMVVATALIDMYSKSGNLASA 538

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGN--------IELAEIAAKHLSELEPESAANNML 557
             + + +  E +L  W A+L     HG          ++   +A   + L+P+S     L
Sbjct: 539 TRIFERIQEEKNLVSWNAMLTGLAAHGQGREAIALFDDMCSASAGAGAGLKPDSITFTAL 598

Query: 558 LT 559
           LT
Sbjct: 599 LT 600



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 131/292 (44%), Gaps = 68/292 (23%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           N+  W +L       G ++++   F+EM    ++ ++  +  +L+AC  L+ +  G+++H
Sbjct: 447 NVVSWTSLISGSCHNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLAKGKELH 506

Query: 203 SLVL-KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGL 260
              L + ++  D  V ++LIDMYSK G++  A ++F+ +  EK++V+ NAM++G    G 
Sbjct: 507 CFALRRRAYDRDMVVATALIDMYSKSGNLASATRIFERIQEEKNLVSWNAMLTGLAAHGQ 566

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
             EA+ L ++               + S  + +G               G++PD +++T+
Sbjct: 567 GREAIALFDD---------------MCSASAGAG--------------AGLKPDSITFTA 597

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           +++         E +D F  M S+ G  PT                     E + C    
Sbjct: 598 LLTACRSMELITEGWDYFDAMESRYGVTPTV--------------------ENYAC---- 633

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT-WNSMIFGCANHG 430
                      +VD+ A+CG++ EA    ++   ++  + W +++ GC  HG
Sbjct: 634 -----------MVDLLARCGYLDEATDFINRSPFKSAASLWGALLTGCVVHG 674



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 105/261 (40%), Gaps = 13/261 (4%)

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D + W   ++ L       +A   F EM ++G  P     +  L AC  A   R G+ +H
Sbjct: 137 DTMLWNKRVAMLAEAEEWGDAIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVH 196

Query: 374 GCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
             A   G V     V   L  MYA+   +  AR + +   +   V WN ++  CA  G  
Sbjct: 197 AHAAKAGHVAAHPLVPGFLAGMYAESADVGAARRVLET-EDAPPVAWNVVVACCARLGLV 255

Query: 433 DEAIELFNQMEERKKLDH----LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           D+A++L  +M     ++      ++ AVL+ C   G       +   M E+  I P +  
Sbjct: 256 DDALDLAERMARSGPVEASPSLATWNAVLSGCARHGRDREAFGVVRSMLER-GIPPDSSS 314

Query: 489 YACMVDLLGRAGRLA---EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
            + ++  +   G LA   EA+        EPD++   A +      G +E A+   K   
Sbjct: 315 MSSLLKSVASLGLLAHGMEAHCFFLRHRLEPDVYTGTAFVDMYAKCGRLEYAQ---KVFD 371

Query: 546 ELEPESAANNMLLTDLYANAG 566
            LE  +      L   Y+NAG
Sbjct: 372 TLELRNITTWNSLVAGYSNAG 392


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 179/474 (37%), Positives = 270/474 (56%), Gaps = 14/474 (2%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K+LHAQ+I+ GL   T    KLI+F    +  ++ +A+ +FD+IP+ N   + +L   Y+
Sbjct: 5   KLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYS 64

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                 +AV +F  M   GL  N F +P VLKACG  S       +H L +K   G+  F
Sbjct: 65  NSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 124

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           V ++LI +Y  CG +  A+K+FD++ +K   DI+  NA+V  Y + G     L+  + I 
Sbjct: 125 VQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCG----NLHSAQAIF 180

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + NVV+W ++IS +++ G   +  ++F  M  K    +VVSW S+IS  +      
Sbjct: 181 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGK----NVVSWNSMISCYLREGQYR 236

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA D F +M +    P  AT+ SIL AC+   ++  GK+IH   +       + + ++L+
Sbjct: 237 EALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLI 296

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
           DMYAKCG +  A  +F +M  +N V+WN +I   A HG   EAI+LF +M+    L D +
Sbjct: 297 DMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEI 356

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           + T +L+AC H GLV++G   F+ M   Y++    EHYACMVDLLGR G L EA E+I  
Sbjct: 357 TLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGR 416

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           M  +PD+ VWGALLGAC+ HGN+E+ +   K L ELEP S    +L++++Y  A
Sbjct: 417 MPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEA 470



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 85/214 (39%), Gaps = 46/214 (21%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +H  ++ +  A    +   LI  Y +C  +  A  +F E+P  N+  W  + GA
Sbjct: 270 LVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGA 329

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A  G   EA+ +F EM   G   +   +  +L AC H                      
Sbjct: 330 LALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSH---------------------- 367

Query: 214 AFVVSSLIDM----YSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
               S L+DM    + + G + +        V ++I     MV    + GL  EA   +E
Sbjct: 368 ----SGLVDMGLYYFDRMGVIYR--------VPREIEHYACMVDLLGRGGLLGEA---IE 412

Query: 270 EIGTPRVKPNVVTWNTL-----ISGFSKSGDQVM 298
            IG   +KP+VV W  L     I G  + G Q++
Sbjct: 413 LIGRMPMKPDVVVWGALLGACRIHGNVEIGKQIL 446


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 171/496 (34%), Positives = 282/496 (56%), Gaps = 33/496 (6%)

Query: 88  YIRDRALQSGKILHAQLIVSG-LARLTQIATKLITFYTECQN-IHHARMLFDEIPKTNIH 145
           + R R+L+  K +HA + + G L+  +++   L       +  I HA ++FD+IP+ +  
Sbjct: 15  WRRCRSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRF 74

Query: 146 RWIALTGAYARRGYHQEAVTVFHEM----HIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
            +  L    A     ++AV+++  M       G++ +    P VL+AC  +    TG ++
Sbjct: 75  MYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQV 134

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H+ V+K    +DAFV ++LI M++ CG++  A  +FD    +D VA +AM++G  +RG  
Sbjct: 135 HAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDI 194

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
             A +L +E        ++V+WN +I+ ++K GD  +  +LF  +     E DVVSW  +
Sbjct: 195 GAARDLFDECPVK----DLVSWNVMITAYAKRGDMALARELFDQV----PERDVVSWNVM 246

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH-------- 373
           ISG V    +  A + F++M   G  P   T+ S+L ACA + ++  G+ +H        
Sbjct: 247 ISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFS 306

Query: 374 --GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
             G  +V+G        +AL+DMYAKCG +  A  +F  M +++  TWNS++ G A HG+
Sbjct: 307 RNGFPVVLG--------NALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGH 358

Query: 432 CDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             E+I++F +M + K + D ++F AVL AC H G+V+ G+  FN+MQ KY++ P  +HY 
Sbjct: 359 VLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYG 418

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMVD+LGRAG L EA+E I TM  EP+  +W  LL AC+ HG IELA+ A + L +   +
Sbjct: 419 CMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARND 478

Query: 551 SAANNMLLTDLYANAG 566
            + + +LL+++YA+ G
Sbjct: 479 ESGDYVLLSNIYASVG 494


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 172/481 (35%), Positives = 267/481 (55%), Gaps = 13/481 (2%)

Query: 92  RALQSGKILHAQLI---VSGLARLTQIATKLITFYTECQNI--HHARMLFDEIPKTNIHR 146
           ++++  K +HA +I    S  A+LT I+T+L     +   I   +A  L  ++   N+  
Sbjct: 48  KSIKGLKQIHASIIKTMPSPDAQLT-ISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPL 106

Query: 147 WIALTGAYARRGYHQ-EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
           + A+    A       E + V+ +M  +G+  + + IP VLKAC     +  GE++H   
Sbjct: 107 YNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQA 166

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K    +D +V ++L+ MY+ C  +  A+KVFD   ++D+V+   M+ GYV+ G A E +
Sbjct: 167 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 226

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L   I    V  +V   N L+  + K GD     K+FQ M  K    +VVSW S+ISGL
Sbjct: 227 GLYI-IRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK----NVVSWNSMISGL 281

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  E+   F++M   G  P   T+ ++L +CA+   +  GK +H       +  D 
Sbjct: 282 AQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADG 341

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
            + +ALVDMYAKCG I +A  +F  M+ ++  ++ +MI G A HG   +A++LF++M + 
Sbjct: 342 FIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKM 401

Query: 446 K-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             + D ++F  VLTAC HVGLVE G++ F  M   Y + P+ EHY CMVDLLGRAG + E
Sbjct: 402 GIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINE 461

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           A E I+ M  EPD FV GALLGACK HG +EL E   K + ++EP      +L++++Y++
Sbjct: 462 AEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSS 521

Query: 565 A 565
           A
Sbjct: 522 A 522


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/477 (34%), Positives = 264/477 (55%), Gaps = 42/477 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +L+ G+I  A+ +   + +   ++ T ++  Y E  ++  AR +FDE+P+ N   W A+ 
Sbjct: 229 SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMI 288

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y++ GY +EA+ +F +M  +G K NI      L A   L  +  G  IH  V K    
Sbjct: 289 ARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGID 348

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ SSLID+Y KCG  +  + VFD ++EK                            
Sbjct: 349 KDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK---------------------------- 380

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  NVV WN+++ G+S +G      +LF+L+     E + VSW ++I+G + N   
Sbjct: 381 -------NVVCWNSMVGGYSINGRLEETEELFELIP----EKNDVSWGTIIAGYLENEQC 429

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           ++  + F  +L  G  P  +T SS+L ACAS A++ +G  +HG  I +G++ D+ V +AL
Sbjct: 430 EKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTAL 489

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--D 449
            DMYAKCG I  ++ +F++M E+N ++W  MI G A  G+  E++ LF +ME   ++  +
Sbjct: 490 TDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            L   +VL AC H GLV+ G   FN M++ Y I P+ +HY C+VDLL R+GRL EA E I
Sbjct: 550 ELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFI 609

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +T+  +P+   W ALL  CK + + ++AE  AK L +L   ++A  +LL+++YA+AG
Sbjct: 610 RTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAG 666



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 136/568 (23%), Positives = 236/568 (41%), Gaps = 143/568 (25%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ-------------------------- 127
           +  G +LHA LI +G +    IA KL+  Y  C+                          
Sbjct: 37  ITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISA 96

Query: 128 -----NIHHARMLFDEIPK-------------------------------TNIHRWIALT 151
                N+  AR+LFDE+P+                                N+  W A  
Sbjct: 97  YVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAI 156

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + R G + EA+ +F  +   G++ N     SV++ACG L D G G  I  LV+K  F 
Sbjct: 157 SGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFE 216

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V +SLI +  + G ++ A++VFD M ++D+V+  A++  YV+ G   EA  + +E+
Sbjct: 217 HYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEM 276

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
             P  + N ++W+ +I+ +S+SG      KLF  M  +G +P++                
Sbjct: 277 --P--ERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNI---------------- 316

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
                              +  +  L A AS   +  G  IHG    +G++ D+ + S+L
Sbjct: 317 -------------------SCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSL 357

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG--------------------- 430
           +D+Y KCG   + R +FD + E+N V WNSM+ G + +G                     
Sbjct: 358 IDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWG 417

Query: 431 ----------YCDEAIELFNQMEERKKLDHLS-FTAVLTACCHVGLVELGQRLFNMMQE- 478
                      C++ +E+FN +    +  + S F++VL AC  +  ++ G  +   + + 
Sbjct: 418 TIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL 477

Query: 479 --KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             +Y I   T     + D+  + G +  + ++ + M  E +   W  ++      G    
Sbjct: 478 GIQYDIFVGT----ALTDMYAKCGDIGSSKQVFERM-PEKNEISWTVMIQGLAESGFAVE 532

Query: 537 AEIAAKHLSELEPESAANN-MLLTDLYA 563
           + I  + + E   E A N  MLL+ L+A
Sbjct: 533 SLILFEEM-ERTSEVAPNELMLLSVLFA 559



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 178/388 (45%), Gaps = 36/388 (9%)

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
           T     +A+    + R Y Q  V++  +   QGL                   I  G  +
Sbjct: 3   TTFRTLLAIDPKKSFRAYAQTCVSLLKKFSNQGL-------------------ITQGNVL 43

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H+ ++K  F +  ++   L+ +Y  C    +  ++  E    D+V  N M+S YVQ G  
Sbjct: 44  HAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNL 103

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
            +A  L +E+  P  + N V+W+ LISG  K G        F+    +    +VVSWT+ 
Sbjct: 104 VQARLLFDEM--P--ERNEVSWSALISGLMKYGRVEESMWYFE----RNPFQNVVSWTAA 155

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ISG V N  N EA   F  +L  G  P   T +S++ AC    +   G  I G  +  G 
Sbjct: 156 ISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGF 215

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E  L V ++L+ +  + G I  AR +FD+M +R+ V+W +++      G   EA  +F++
Sbjct: 216 EHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDE 275

Query: 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAG 500
           M ER   + +S++A++      G  E   +LF+ M+QE +K  P    +AC +  L    
Sbjct: 276 MPER---NEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK--PNISCFACTLSALASLR 330

Query: 501 RLAEAYEM---IKTMSTEPDLFVWGALL 525
            L+    +   +  +  + D+F+  +L+
Sbjct: 331 ALSAGINIHGHVTKIGIDKDVFIGSSLI 358



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 32/220 (14%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL +G  +H  +   G+ +   I + LI  Y +C      R++FD I + N+  W ++ 
Sbjct: 330 RALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMV 389

Query: 152 GAYARRGYH-------------------------------QEAVTVFHEMHIQGLKQNIF 180
           G Y+  G                                 ++ + VF+ + + G   N  
Sbjct: 390 GGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKS 449

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
              SVL AC  ++ +  G  +H  ++K     D FV ++L DMY+KCG +  +K+VF+ M
Sbjct: 450 TFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIG-TPRVKPN 279
            EK+ ++   M+ G  + G A E+L L EE+  T  V PN
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 116/255 (45%), Gaps = 24/255 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G  +H ++I  G+     + T L   Y +C +I  ++ +F+ +P+ N   W  +  
Sbjct: 463 SLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522

Query: 153 AYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTG-------EKIHSL 204
             A  G+  E++ +F EM     +  N  ++ SVL AC H   +  G       EK++ +
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGL 260
             K    T       ++D+ S+ G + +A++    +  + +  A  A++SG   Y    +
Sbjct: 583 KPKGKHYT------CVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKI 636

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSWT 319
           A      + ++     + N   +  L + ++ +G  + VS + +LMR KG++     SW 
Sbjct: 637 AERTAKKLWQLA----ENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWV 692

Query: 320 SVISGLVHNFCNDEA 334
            V    VH+F +++ 
Sbjct: 693 EV-RNQVHSFYSEDG 706


>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 176/572 (30%), Positives = 297/572 (51%), Gaps = 55/572 (9%)

Query: 28  RRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEI 87
           R+IYFA LS            +++ + L    F++   K  + S+        Y E I +
Sbjct: 123 RKIYFADLS------------TESARELFTE-FVKDWNKQKLESK--------YYEGI-L 160

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
            I  +A + G ++H  LI +G      + TKLI FY +  ++  AR +FD +P+ ++  W
Sbjct: 161 CIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSW 220

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            A+   Y++ G  ++A  +F +M   G+K N F   S L+AC  L  +  G ++   + K
Sbjct: 221 TAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQK 280

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             F  + FV S+L+D +SKCG +E A  +F  M+E+D+V+ NAM+ GY  +G A ++  +
Sbjct: 281 GRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCM 340

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL---------------------- 305
              +    + P+  T  +++   ++ G  ++ +++  +                      
Sbjct: 341 FRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAK 400

Query: 306 ---------MRAKGVEPDVVSWTSVISGLVH-NFCNDEAFDTFKEMLSQGFCPTSATISS 355
                    +R   ++ D+ S T++I+G  H    + +A D FKEM           + S
Sbjct: 401 NGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCS 460

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L  CA+ A+   G +IH  A+      D+ + +AL+DMYAK G I +A+  FD+M E+N
Sbjct: 461 MLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKN 520

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            ++W S+I G A HGY   A+ L+ +ME +  K + ++F ++L AC H GL   G   FN
Sbjct: 521 VISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFN 580

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M  KY I PR EHY+CMVDL  R G L EAY ++  +  + +  +WGA+LGA   +G +
Sbjct: 581 NMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYM 640

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            L + AA +L  ++PE++ N ++L  +Y+ AG
Sbjct: 641 SLGKEAASNLFNMQPENSVNYVVLASIYSAAG 672


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 261/505 (51%), Gaps = 32/505 (6%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D  L  G+ LHA     G A   +I   L+  Y +C +I  A   F E    N+  W  +
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             AY      + +  +F +M I+ +  N +  PS+LK C  L D+  GE+IHS ++K +F
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 521

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +A+V S LIDMY+K G ++ A  +      KD+V+   M++GY Q     +AL    +
Sbjct: 522 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581

Query: 271 IGTPRVKPNVVTWNTLISGFS-----KSGDQVMVSKL---------FQ------LMRAKG 310
           +    ++ + V     +S  +     K G Q+              FQ        R   
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 641

Query: 311 VEP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           +E            D ++W +++SG   +  N+EA   F  M  +G    + T  S + A
Sbjct: 642 IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            +  ANM++GK++H      G + +  V +AL+ MYAKCG IS+A   F ++S +N V+W
Sbjct: 702 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 761

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N++I   + HG+  EA++ F+QM     + +H++   VL+AC H+GLV+ G   F  M  
Sbjct: 762 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 821

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +Y + P+ EHY C+VD+L RAG L+ A E I+ M  +PD  VW  LL AC  H N+E+ E
Sbjct: 822 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 881

Query: 539 IAAKHLSELEPESAANNMLLTDLYA 563
            AA HL ELEPE +A  +LL++LYA
Sbjct: 882 FAAHHLLELEPEDSATYVLLSNLYA 906



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 238/489 (48%), Gaps = 36/489 (7%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P A+S  +    +  +L+ G+ LH  ++  G +  T +   L++ Y    N+  A  +F
Sbjct: 287 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIF 346

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
             + + +   +  L    ++ GY ++A+ +F  MH+ GL+ +   + S++ AC     + 
Sbjct: 347 SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLF 406

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G+++H+   K  F ++  +  +L+++Y+KC  +E A   F E   +++V  N M+  Y 
Sbjct: 407 RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG 466

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQV-------------- 297
                  +  +  ++    + PN  T+ +++      G  + G+Q+              
Sbjct: 467 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAY 526

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                  M +KL +L  A  +       DVVSWT++I+G      +D+A  TF++ML +G
Sbjct: 527 VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 586

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
                  +++ + ACA    ++ G++IH  A V G   DL  ++ALV +Y++CG I E+ 
Sbjct: 587 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY 646

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT--AVLTACCHV 463
             F++    + + WN+++ G    G  +EA+ +F +M  R+ +D+ +FT  + + A    
Sbjct: 647 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRM-NREGIDNNNFTFGSAVKAASET 705

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             ++ G+++  ++  K      TE    ++ +  + G +++A +    +ST+ ++  W A
Sbjct: 706 ANMKQGKQVHAVIT-KTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV-SWNA 763

Query: 524 LLGACKNHG 532
           ++ A   HG
Sbjct: 764 IINAYSKHG 772



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 219/474 (46%), Gaps = 42/474 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+++  GL   T +   LI  Y+    +  AR +FD +   +   W+A+    ++   
Sbjct: 209 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
             EA+ +F +M++ G+    +   SVL AC  +  +  GE++H LVLK  F +D +V ++
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 328

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ +Y   G++  A+ +F  M ++D V  N +++G  Q G   +A+ L + +    ++P+
Sbjct: 329 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 388

Query: 280 VVTWNTLISGFSKSG--------------------DQVMVSKLFQLMRAKGVE------- 312
             T  +L+   S  G                    +++  + L    +   +E       
Sbjct: 389 SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFL 448

Query: 313 ----PDVVSWTS--VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                +VV W    V  GL+ +  N  +F  F++M  +   P   T  SIL  C    ++
Sbjct: 449 ETEVENVVLWNVMLVAYGLLDDLRN--SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 506

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G++IH   I    + + +V S L+DMYAK G +  A  +  + + ++ V+W +MI G 
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 566

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM--MQEKYKIM 483
             + + D+A+  F QM +R  + D +  T  ++AC  +  ++ GQ++     +      +
Sbjct: 567 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 626

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           P       +V L  R G++ E+Y +    +   D   W AL+   +  GN E A
Sbjct: 627 PFQN---ALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEA 676



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 220/473 (46%), Gaps = 45/473 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ LH+Q++  GL     ++ KL  FY    +++ A  +FDE+P+  I  W  +  
Sbjct: 100 SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIK 159

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GHLSDIGTGEKIHSLVLKHSFG 211
             A R    E   +F  M  + +  N      VL+AC G        E+IH+ +L     
Sbjct: 160 ELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLR 219

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V + LID+YS+ G V+ A++VFD +  KD  +  AM+SG  +     EA+ L  ++
Sbjct: 220 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM 279

Query: 272 GTPRVKPNVVTWNTLISGFSK-----SGDQV------------------MVSKLFQLMRA 308
               + P    +++++S   K      G+Q+                  +VS  F L   
Sbjct: 280 YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNL 339

Query: 309 KGVE--------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
              E         D V++ ++I+GL      ++A + FK M   G  P S T++S++ AC
Sbjct: 340 ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 399

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           ++   + RG+++H     +G   +  +  AL+++YAKC  I  A   F +    N V WN
Sbjct: 400 SADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN 459

Query: 421 SMIFGCANHGYCDE---AIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            M+     +G  D+   +  +F QM+ E    +  ++ ++L  C  +G +ELG+++ + +
Sbjct: 460 VMLVA---YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 516

Query: 477 QEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
               K   +   Y C  ++D+  + G+L  A++++   + + D+  W  ++  
Sbjct: 517 ---IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 565



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 200/466 (42%), Gaps = 76/466 (16%)

Query: 173 QGLKQNIFVIPSVLKACGHLS-DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
           +G++ N   +  +L+ C   +  +  G K+HS +LK    ++  +   L D Y   G + 
Sbjct: 78  RGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLY 137

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------------ 279
            A KVFDEM E+ I   N M+     R L  E   L   + +  V PN            
Sbjct: 138 GAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR 197

Query: 280 ------------------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
                                    V  N LI  +S++G   +  ++F  +R K    D 
Sbjct: 198 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK----DH 253

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
            SW ++ISGL  N C  EA   F +M   G  PT    SS+L AC    ++  G+++HG 
Sbjct: 254 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL 313

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
            + +G   D +V +ALV +Y   G +  A  +F  MS+R+ VT+N++I G +  GY ++A
Sbjct: 314 VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 373

Query: 436 IELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQR-------------------LFNM 475
           +ELF +M  +  + D  +  +++ AC   G +  GQ+                   L N+
Sbjct: 374 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433

Query: 476 MQE--------KYKIMPRTEH---YACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVW 521
             +         Y +    E+   +  M+   G    L  ++ + + M  E   P+ + +
Sbjct: 434 YAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 493

Query: 522 GALLGACKNHGNIELAEIAAKHLSELEPE-SAANNMLLTDLYANAG 566
            ++L  C   G++EL E     + +   + +A    +L D+YA  G
Sbjct: 494 PSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 539



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 23/370 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL+ G+ +HAQ  VSG +        L+T Y+ C  I  + + F++    +   W AL 
Sbjct: 605 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 664

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + + G ++EA+ VF  M+ +G+  N F   S +KA    +++  G+++H+++ K  + 
Sbjct: 665 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD 724

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++LI MY+KCGS+  A+K F E+  K+ V+ NA+++ Y + G  +EAL+  +++
Sbjct: 725 SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM 784

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSK---LFQLMRAK-GVEPDVVSWTSVISGLVH 327
               V+PN VT   ++S  S  G   +V K    F+ M ++ G+ P    +  V+  L  
Sbjct: 785 IHSNVRPNHVTLVGVLSACSHIG---LVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTR 841

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                 A +  +EM  +   P +    ++L AC    NM  G E     ++     D   
Sbjct: 842 AGLLSRAKEFIQEMPIK---PDALVWRTLLSACVVHKNMEIG-EFAAHHLLELEPEDSAT 897

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNT-----VTW-------NSMIFGCANHGYCDEA 435
              L ++YA             KM E+        +W       +S   G  NH   DE 
Sbjct: 898 YVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEI 957

Query: 436 IELFNQMEER 445
            E F  + +R
Sbjct: 958 HEYFQDLTKR 967



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 161/386 (41%), Gaps = 41/386 (10%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   ++  IR   L+ G+ +H+Q+I +       + + LI  Y +   +  A  +     
Sbjct: 493 YPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 552

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             ++  W  +   Y +  +  +A+T F +M  +G++ +   + + + AC  L  +  G++
Sbjct: 553 GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ 612

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IH+      F +D    ++L+ +YS+CG +E++   F++    D +A NA+VSG+ Q G 
Sbjct: 613 IHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGN 672

Query: 261 ATEALNLVEEIGTPRVKPNVVTW-----------------------------------NT 285
             EAL +   +    +  N  T+                                   N 
Sbjct: 673 NEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNA 732

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           LIS ++K G      K F  +  K    + VSW ++I+    +    EA D+F +M+   
Sbjct: 733 LISMYAKCGSISDAEKQFLEVSTK----NEVSWNAIINAYSKHGFGSEALDSFDQMIHSN 788

Query: 346 FCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
             P   T+  +L AC+    + +G           G+         +VDM  + G +S A
Sbjct: 789 VRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRA 848

Query: 405 RTLFDKMS-ERNTVTWNSMIFGCANH 429
           +    +M  + + + W +++  C  H
Sbjct: 849 KEFIQEMPIKPDALVWRTLLSACVVH 874


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 180/505 (35%), Positives = 264/505 (52%), Gaps = 33/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +HA ++  GL     +   L+T Y +C ++  AR +FD +  T+   W A+   
Sbjct: 211 LTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAG 270

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +      +  + +F  M    ++ N+  I SV  A G LSD+   ++IH+L +K  F TD
Sbjct: 271 HFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATD 330

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               +SLI MYS  G + +A  VF  M  +D ++  AM+SGY + G   +AL +   +  
Sbjct: 331 VAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEV 390

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV---------------------- 311
             V P+ VT  + ++  +  G   +  KL +L  +KG                       
Sbjct: 391 NNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEK 450

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    + DV+SW+S+I+G   N  N EA   F+ ML+    P S T  + L ACA+
Sbjct: 451 AIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLAD-VKPNSVTFIAALAACAA 509

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             ++R GKEIH   +  G+  + +V +AL+D+Y KCG    A   F     ++ V+WN M
Sbjct: 510 TGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIM 569

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           + G   HG+ D A+  FN+M E  +  D ++F A+L  C   G+V  G  LF+ M EKY 
Sbjct: 570 LAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYS 629

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I+P  +HYACMVDLL R GRL E Y  I  M   PD  VWGALL  C+ H NIEL E+AA
Sbjct: 630 IVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAA 689

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           K + ELEP  A  ++LL+DLYA+AG
Sbjct: 690 KIVLELEPNDAGYHVLLSDLYADAG 714



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 222/463 (47%), Gaps = 49/463 (10%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           ++   +++         HA  +F ++P+ ++  W  + G Y + G+ +EA+ ++H M   
Sbjct: 130 RLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWA 189

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G + +++  P VL++CG + D+  G ++H+ VL+   G +  V+++L+ MY+KCG VE A
Sbjct: 190 GARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAA 249

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT----------- 282
           +KVFD M   D ++ NAM++G+ +       L L   +    V+PN++T           
Sbjct: 250 RKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLL 309

Query: 283 ------------------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                    N+LI  +S  G       +F  M  +    D +SW
Sbjct: 310 SDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETR----DAMSW 365

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           T++ISG   N   D+A + +  M      P   T++S L ACAS   +  G ++H  A  
Sbjct: 366 TAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATS 425

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG-CANHGYCDEAIE 437
            G    + V +ALV+MYAK   I +A  +F  M +++ ++W+SMI G C NH    EA+ 
Sbjct: 426 KGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNF-EALY 484

Query: 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYA--CMVD 494
            F  M    K + ++F A L AC   G +  G+ +  +++++       +E Y    ++D
Sbjct: 485 YFRHMLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIA----SEGYVPNALLD 540

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           L  + G+   A+       T+ D+  W  +L     HG+ ++A
Sbjct: 541 LYVKCGQTGYAWAQFGAHGTK-DVVSWNIMLAGFVAHGHGDIA 582



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 186/403 (46%), Gaps = 56/403 (13%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L+ACGH +D   G          +FG    + ++++ M  + G    A KVF +M E+D+
Sbjct: 114 LRACGH-ADAAHG----------TFGLR--LGNAMLSMLVRFGETWHAWKVFAKMPERDV 160

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW---------------------- 283
            + N MV GY + G   EAL+L   +     +P+V T+                      
Sbjct: 161 FSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAH 220

Query: 284 -------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                        N L++ ++K GD     K+F  M       D +SW ++I+G   N  
Sbjct: 221 VLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLT----DCISWNAMIAGHFENHE 276

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            +   + F  ML     P   TI+S+  A    +++   KEIH  A+  G   D+   ++
Sbjct: 277 CEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNS 336

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLD 449
           L+ MY+  G + EA T+F +M  R+ ++W +MI G   +G+ D+A+E++  ME      D
Sbjct: 337 LIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 396

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++  + L AC  +G +++G +L  +   K  I       A +V++  ++  + +A E+ 
Sbjct: 397 DVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANA-LVEMYAKSKIIEKAIEVF 455

Query: 510 KTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHLSELEPES 551
           K M  + D+  W +++ G C NH N E        L++++P S
Sbjct: 456 KYMP-DKDVISWSSMIAGFCFNHKNFEALYYFRHMLADVKPNS 497



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 122/278 (43%), Gaps = 25/278 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK +HA ++  G+A    +   L+  Y +C    +A   F      ++  W  +  
Sbjct: 512 SLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLA 571

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
            +   G+   A++ F+EM   G   +     ++L  C     +  G E  HS+  K+S  
Sbjct: 572 GFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIV 631

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRG--LATEALNL 267
            +    + ++D+ S+ G + +     + M +  D     A+++G  + R   L   A  +
Sbjct: 632 PNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKI 691

Query: 268 VEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
           V E+     +PN   ++ L+S  ++ +G    VSK+ + MR KG+E D   SW  V  G 
Sbjct: 692 VLEL-----EPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEV-KGA 745

Query: 326 VHNF-CNDEAFDTFKE-----------MLSQGFCPTSA 351
           +H F  +DE+    KE           M + GF P  +
Sbjct: 746 IHAFLTDDESHPQIKEINDVLDGIYERMKASGFAPVES 783


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/477 (34%), Positives = 264/477 (55%), Gaps = 42/477 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +L+ G+I  A+ +   + +   ++ T ++  Y E  ++  AR +FDE+P+ N   W A+ 
Sbjct: 229 SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMI 288

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y++ GY +EA+ +F +M  +G K NI      L A   L  +  G  IH  V K    
Sbjct: 289 ARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGID 348

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ SSLID+Y KCG  +  + VFD ++EK                            
Sbjct: 349 KDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK---------------------------- 380

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  NVV WN+++ G+S +G      +LF+L+     E + VSW ++I+G + N   
Sbjct: 381 -------NVVCWNSMVGGYSINGRLEETEELFELI----PEKNDVSWGTIIAGYLENEQC 429

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           ++  + F  +L  G  P  +T SS+L ACAS A++ +G  +HG  I +G++ D+ V +AL
Sbjct: 430 EKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTAL 489

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--D 449
            DMYAKCG I  ++ +F++M E+N ++W  MI G A  G+  E++ LF +ME   ++  +
Sbjct: 490 TDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            L   +VL AC H GLV+ G   FN M++ Y I P+ +HY C+VDLL R+GRL EA E I
Sbjct: 550 ELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFI 609

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +T+  +P+   W ALL  CK + + ++AE  AK L +L   ++A  +LL+++YA+AG
Sbjct: 610 RTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAG 666



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 135/568 (23%), Positives = 235/568 (41%), Gaps = 143/568 (25%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ-------------------------- 127
           +  G +LHA LI +G +    IA KL+  Y  C+                          
Sbjct: 37  ITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISA 96

Query: 128 -----NIHHARMLFDEIPK-------------------------------TNIHRWIALT 151
                N+  AR+LFDE+P+                                N+  W A  
Sbjct: 97  YVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAI 156

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + R G + EA+ +F  +   G++ N     SV++ACG L D G G  I  LV+K  F 
Sbjct: 157 SGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFE 216

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V +SLI +  + G ++ A++VFD M ++D+V+  A++  YV+ G   EA  + +E+
Sbjct: 217 HYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEM 276

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + N ++W+ +I+ +S+SG      KLF  M  +G +P++  +   +S L      
Sbjct: 277 P----ERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSAL------ 326

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
                                        AS   +  G  IHG    +G++ D+ + S+L
Sbjct: 327 -----------------------------ASLRALSAGINIHGHVTKIGIDKDVFIGSSL 357

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG--------------------- 430
           +D+Y KCG   + R +FD + E+N V WNSM+ G + +G                     
Sbjct: 358 IDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWG 417

Query: 431 ----------YCDEAIELFNQMEERKKLDHLS-FTAVLTACCHVGLVELGQRLFNMMQE- 478
                      C++ +E+FN +    +  + S F++VL AC  +  ++ G  +   + + 
Sbjct: 418 TIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL 477

Query: 479 --KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             +Y I   T     + D+  + G +  + ++ + M  E +   W  ++      G    
Sbjct: 478 GIQYDIFVGT----ALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVMIQGLAESGFAVE 532

Query: 537 AEIAAKHLSELEPESAANN-MLLTDLYA 563
           + I  + + E   E A N  MLL+ L+A
Sbjct: 533 SLILFEEM-ERTSEVAPNELMLLSVLFA 559



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 177/388 (45%), Gaps = 36/388 (9%)

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
           T     +A+    + R Y Q  V++  +   QGL                   I  G  +
Sbjct: 3   TTFRTLLAIDPKKSFRAYAQTCVSLLKKFSNQGL-------------------ITQGNVL 43

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H+ ++K  F +  ++   L+ +Y  C    +  ++  E    D+V  N M+S YVQ G  
Sbjct: 44  HAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNL 103

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
            +A  L +E+     + N V+W+ LISG  K G        F+    +    +VVSWT+ 
Sbjct: 104 VQARLLFDEMP----ERNEVSWSALISGLMKYGRVEESMWYFE----RNPFQNVVSWTAA 155

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ISG V N  N EA   F  +L  G  P   T +S++ AC    +   G  I G  +  G 
Sbjct: 156 ISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGF 215

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E  L V ++L+ +  + G I  AR +FD+M +R+ V+W +++      G   EA  +F++
Sbjct: 216 EHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDE 275

Query: 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAG 500
           M ER   + +S++A++      G  E   +LF+ M+QE +K  P    +AC +  L    
Sbjct: 276 MPER---NEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK--PNISCFACTLSALASLR 330

Query: 501 RLAEAYEM---IKTMSTEPDLFVWGALL 525
            L+    +   +  +  + D+F+  +L+
Sbjct: 331 ALSAGINIHGHVTKIGIDKDVFIGSSLI 358



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 42/305 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL +G  +H  +   G+ +   I + LI  Y +C      R++FD I + N+  W ++ 
Sbjct: 330 RALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMV 389

Query: 152 GAYARRGYH-------------------------------QEAVTVFHEMHIQGLKQNIF 180
           G Y+  G                                 ++ + VF+ + + G   N  
Sbjct: 390 GGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKS 449

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
              SVL AC  ++ +  G  +H  ++K     D FV ++L DMY+KCG +  +K+VF+ M
Sbjct: 450 TFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIG-TPRVKPNVVTWNTLISGFSKSGDQVMV 299
            EK+ ++   M+ G  + G A E+L L EE+  T  V PN +   +++   S  G   +V
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCG---LV 566

Query: 300 SK---LFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
            K    F  M +  G++P    +T V+  L  +    EA +  + +    F P +   ++
Sbjct: 567 DKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTI---PFQPEANAWAA 623

Query: 356 ILPAC 360
           +L  C
Sbjct: 624 LLSGC 628



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 116/255 (45%), Gaps = 24/255 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G  +H ++I  G+     + T L   Y +C +I  ++ +F+ +P+ N   W  +  
Sbjct: 463 SLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522

Query: 153 AYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTG-------EKIHSL 204
             A  G+  E++ +F EM     +  N  ++ SVL AC H   +  G       EK++ +
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGL 260
             K    T       ++D+ S+ G + +A++    +  + +  A  A++SG   Y    +
Sbjct: 583 KPKGKHYT------CVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKI 636

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSWT 319
           A      + ++     + N   +  L + ++ +G  + VS + +LMR KG++     SW 
Sbjct: 637 AERTAKKLWQLA----ENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWV 692

Query: 320 SVISGLVHNFCNDEA 334
            V    VH+F +++ 
Sbjct: 693 EV-RNQVHSFYSEDG 706


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 252/429 (58%), Gaps = 6/429 (1%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P+ N+  W ++   Y++ G    A+  + +M   G+  + F   S++KAC  L DIG G
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
            ++H+ VLK  FG      ++LI MY+K   +  A  VF  M  +D+++  +M++G+ Q 
Sbjct: 61  RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
           G   EAL   +E+   + +P++V WN +I+GF+  G+       F+ MR      D+VSW
Sbjct: 121 GYELEALCYFKEM-LHQGRPDLVAWNAIIAGFAY-GELRDAIFFFEEMRCNA---DLVSW 175

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
            ++++  + +   +E F   K M      P   T++++L A A   ++  G ++H  A+ 
Sbjct: 176 NAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALK 235

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
            G+  D  V + L+D+YAKCG +  A  +FD M   + V+W+S+I G A  GY +EA++L
Sbjct: 236 TGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKL 295

Query: 439 FNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F  M     K +H++F  VLTAC HVGLVE G +L+  M++++ I P  EH +CMVDLL 
Sbjct: 296 FKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLA 355

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           RAG L EA   I  M+ +PD+ VW  LL ACK HGN+++ + AA+++ +++P ++A ++L
Sbjct: 356 RAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVL 415

Query: 558 LTDLYANAG 566
           L ++YA+ G
Sbjct: 416 LCNIYASKG 424



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G  +H   + +GL   T +   LI  Y +C ++  A  +FD +   ++  W +L  
Sbjct: 222 SIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLIL 281

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ GY +EA+ +F  M    +K N      VL AC H+  +  G K++   ++  FG 
Sbjct: 282 GYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYG-TMEKEFGI 340

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATEALNLVE 269
                  S ++D+ ++ G + +A+    +M  + DIV    +++     G         E
Sbjct: 341 APTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAE 400

Query: 270 EIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGV 311
            I   ++ P+    + L+   ++  G+   V++L  LM+ +GV
Sbjct: 401 NI--LKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGV 441


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 167/506 (33%), Positives = 266/506 (52%), Gaps = 35/506 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G+ +H+ ++  G        + L+  Y +C+ +  A  +F  I   N   W AL   
Sbjct: 116 VEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISG 175

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G    A  +   M ++G++ +      +L             ++H+ ++KH   +D
Sbjct: 176 YAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASD 235

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             V +++I  YS+CGS+E A++VFD  +E +D+V  N+M++ Y+      EA  L  E+ 
Sbjct: 236 TTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQ 295

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE-------------------- 312
               +P++ T+ ++IS   +   Q     L  L+  +G+E                    
Sbjct: 296 VLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKS 355

Query: 313 -------------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                         D VSW S+++G   +  +++A   F+ M SQ         S++L +
Sbjct: 356 MDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRS 415

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           C+  A ++ G+++H   +  G E +  V S+L+ MY+KCG I +AR  FD   + +++ W
Sbjct: 416 CSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAW 475

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NS+IFG A HG    A++LF  M++R+ KLDH++F AVLTAC H+GLVE G      M+ 
Sbjct: 476 NSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMES 535

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y I PR EHYACM+DLLGRAGRL EA  +I+ M  EPD  VW  LLGAC+  G+IELA 
Sbjct: 536 DYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELAS 595

Query: 539 IAAKHLSELEPESAANNMLLTDLYAN 564
             A HL ELEPE     +LL+ ++ +
Sbjct: 596 QVASHLLELEPEEHCTYVLLSSMFGH 621



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 225/484 (46%), Gaps = 45/484 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL    + H   I SG       A  +I+ Y +C  I  A  +F E  + +   W  +  
Sbjct: 14  ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIA 73

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   G  + A+     M   G   + +   S+LK    +  +  G+++HS+++K  +  
Sbjct: 74  GFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEG 133

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ---RGLATEALNLVE 269
           + F  S+L+DMY+KC  VE A +VF  +  ++ V  NA++SGY Q   RG A   L+ +E
Sbjct: 134 NVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCME 193

Query: 270 EIG-----------------------TPRVKPNVV---------TWNTLISGFSKSGDQV 297
             G                       T +V   +V           N +I+ +S+ G   
Sbjct: 194 LEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIE 253

Query: 298 MVSKLFQLMRAKGVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              ++F       +E  D+V+W S+++  + N   +EAF  F EM   GF P   T +S+
Sbjct: 254 DAERVFD----GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSV 309

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK--CGFISEARTLFDKMSER 414
           + A    ++  +GK +HG  I  G+E  + + ++L+ MY K     + EA  +F+ +  +
Sbjct: 310 ISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENK 369

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V+WNS++ G +  G  ++A++ F  M  +   +DH +F+AVL +C  +  ++LGQ++ 
Sbjct: 370 DHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQV- 428

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           +++  K    P     + ++ +  + G + +A +       +  +  W +L+     HG 
Sbjct: 429 HVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSI-AWNSLIFGYAQHGR 487

Query: 534 IELA 537
            ++A
Sbjct: 488 GKIA 491



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 183/382 (47%), Gaps = 28/382 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFY--TECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           GK LH  +I  GL  L  I+  LI  Y  +  +++  A  +F+ +   +   W ++   +
Sbjct: 322 GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGF 381

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           ++ G  ++A+  F  M  Q +  + +   +VL++C  L+ +  G+++H LVLK  F  + 
Sbjct: 382 SQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNG 441

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           FV SSLI MYSKCG +E A+K FD   +   +A N+++ GY Q G    AL+L   +   
Sbjct: 442 FVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDR 501

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK----GVEPDVVSWTSVISGLVHNFC 330
           RVK + +T+  +++  S  G   +V + +  +++     G+ P +  +  +I  L     
Sbjct: 502 RVKLDHITFVAVLTACSHIG---LVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGR 558

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            DEA    + M    F P +    ++L AC +  ++    ++   + ++ +E + H    
Sbjct: 559 LDEAKALIEAM---PFEPDAMVWKTLLGACRTCGDIELASQV--ASHLLELEPEEHCTYV 613

Query: 391 LV-DMYAKCGFISEARTLFDKMSERNT-----VTW-------NSMIFGCANHGYCDEA-I 436
           L+  M+      +E  ++   M ER        +W        S      +H  C+E  +
Sbjct: 614 LLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYL 673

Query: 437 ELFNQMEERKKLDHLSFTAVLT 458
            L   MEE ++LD+++ + +++
Sbjct: 674 RLGELMEEIRRLDYVANSEIMS 695



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 3/174 (1%)

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +S   + R    H  AI  G    ++  + ++  YAKCG I  A  +F + S+R+ V+WN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI G  N G  + A+E    M+     +D  SF ++L     VG VE+GQ++ +MM  K
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMV-K 128

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
                     + ++D+  +  R+ +A+E+ K+++    +  W AL+      G+
Sbjct: 129 MGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSV-TWNALISGYAQVGD 181


>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
          Length = 806

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 267/472 (56%), Gaps = 2/472 (0%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK  HA  +V+GL     + T ++ FY +   I +A M+FD +   ++  W  L   Y +
Sbjct: 268 GKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQ 327

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           +G  ++A+ +   M ++ LK +   + +++ A     +   G+++    ++HSF +D  +
Sbjct: 328 QGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNSKLGKEVQCYCIRHSFESDIGL 387

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S++IDMY+KCGS+  AK+VFD  V+KD++  N +++ Y + GL+ EAL L  E+    V
Sbjct: 388 ASTVIDMYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESV 447

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
            PN +TWN +I    ++G      ++F  M++ G+ P +VSWT++++GLV N C++EA  
Sbjct: 448 PPNAITWNLIILSLFRNGQVDEAKEMFLQMQSSGIVPTLVSWTTMMNGLVQNGCSEEAVH 507

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMY 395
             ++M   G  P   +I+  L ACA+ A++  G+ +HG  I   +    + + +AL+DMY
Sbjct: 508 YLRKMQESGLRPNVFSITVALSACANLASLHLGRSVHGYIIRNQLHSSSVSIETALIDMY 567

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           AKCG IS+A  +F + S      +N+MI   A  G   EAI+L+  +E+   K D+++FT
Sbjct: 568 AKCGDISKAEKVFKRKSYSELPLFNAMISAYALSGNVKEAIDLYRSLEDMGIKPDNITFT 627

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL+AC H G +     +F+ M  K+ + P  EHY  MVDLL  AG   +A  +++ M  
Sbjct: 628 NVLSACNHAGDINQAIEIFSDMVSKHGMEPCLEHYGLMVDLLASAGETEKALRLMEEMPY 687

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +PD  +  +LL  C      EL +  ++ L E EP+++ N + +++ YA  G
Sbjct: 688 KPDARMIQSLLVTCNEEHKTELVDYLSRQLLESEPDNSGNYVTISNAYAGEG 739



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 158/535 (29%), Positives = 260/535 (48%), Gaps = 41/535 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R   +G+ +HA+++ +G   A+   I TKL+ FY +C   
Sbjct: 38  RNVRIGPEIYGEILQGCVYERDFHTGRQIHARILKNGEFYAKNEYIETKLVIFYAKCDAH 97

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A  LF ++   N+  W A+ G   R G  + A+  F EM    +  + FV+P+V KAC
Sbjct: 98  EIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGALMGFVEMLKDEIFPDNFVVPNVCKAC 157

Query: 190 GHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           G L   G G  IH  V K   +G   FV SSL DMY KCG ++ A+KVFDE+ E+++VA 
Sbjct: 158 GALQWSGFGRGIHGYVAKSGLYGDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAW 217

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS--------GFSKSGDQVMVS 300
           NA++ GYVQ G+  EA+ L+ ++    V+P  VT +T +S        G  K    V V 
Sbjct: 218 NALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMCGVGEGKQSHAVAVV 277

Query: 301 KLFQLMRAKG-----------------------VEPDVVSWTSVISGLVHNFCNDEAFDT 337
              ++    G                       +  DVV+W  +ISG V     ++A   
Sbjct: 278 NGLEMDNILGTSVLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRM 337

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            K M  +       T+S+++ A A   N + GKE+    I    E D+ + S ++DMYAK
Sbjct: 338 CKLMRLEKLKFDCVTLSTLMSAAARTQNSKLGKEVQCYCIRHSFESDIGLASTVIDMYAK 397

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAV 456
           CG I +A+ +FD   +++ + WN+++   A  G   EA+ LF +M+ E    + +++  +
Sbjct: 398 CGSIVDAKRVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNAITWNLI 457

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-- 514
           + +    G V+  + +F  MQ    I+P    +  M++ L + G   EA   ++ M    
Sbjct: 458 ILSLFRNGQVDEAKEMFLQMQSS-GIVPTLVSWTTMMNGLVQNGCSEEAVHYLRKMQESG 516

Query: 515 -EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
             P++F     L AC N  ++ L      ++  ++L   S +    L D+YA  G
Sbjct: 517 LRPNVFSITVALSACANLASLHLGRSVHGYIIRNQLHSSSVSIETALIDMYAKCG 571



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 223/465 (47%), Gaps = 53/465 (11%)

Query: 137 DEIPKTN-IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           D+ P+    HR  +L     + G  +EA+++  EM  + ++    +   +L+ C +  D 
Sbjct: 5   DDQPRNPYFHRVSSL----CKNGEIREALSLVTEMDFRNVRIGPEIYGEILQGCVYERDF 60

Query: 196 GTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
            TG +IH+ +LK+   +  + ++ + L+  Y+KC + E A+ +F ++  +++ +  A++ 
Sbjct: 61  HTGRQIHARILKNGEFYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIG 120

Query: 254 GYVQRGLATEAL-----NLVEEIGTPR-VKPNV------VTWNTLISGF----SKS---G 294
              + GLA  AL      L +EI     V PNV      + W+    G     +KS   G
Sbjct: 121 VKCRVGLAEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWSGFGRGIHGYVAKSGLYG 180

Query: 295 DQVMVSKLFQLMRAK-GV------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
           D V V+     M  K GV            E +VV+W +++ G V N  N+EA     +M
Sbjct: 181 DCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDM 240

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             +G  PT  T+S+ L A A+   +  GK+ H  A+V G+E D  + +++++ Y K G I
Sbjct: 241 REEGVEPTRVTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVGLI 300

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC 460
             A  +FD+M  ++ VTWN +I G    G  ++AI +   M  E+ K D ++ + +++A 
Sbjct: 301 EYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAA 360

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEAYEMIKTMSTEP 516
                 +LG+ +     + Y I    E      + ++D+  + G + +A  +  + + + 
Sbjct: 361 ARTQNSKLGKEV-----QCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDS-TVQK 414

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           DL +W  LL A    G   L+  A +   E++ ES   N +  +L
Sbjct: 415 DLILWNTLLAAYAESG---LSGEALRLFYEMQLESVPPNAITWNL 456


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 248/450 (55%), Gaps = 40/450 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I + LI  Y  C  I  AR LFD++   ++  W  +   Y++  ++   + ++ EM   G
Sbjct: 153 IQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSG 212

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
            + +  ++ +VL AC H  ++  G+ IH  +  + F   + + +SL++MY+ CG++  A+
Sbjct: 213 TEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAR 272

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           +V+D++  K +V   AM+SGY + G+  +A  + + +                       
Sbjct: 273 EVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRM----------------------- 309

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                           VE D+V W+++ISG   ++   EA   F EM  +   P   T+ 
Sbjct: 310 ----------------VEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITML 353

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++ ACA+   + + K IH  A   G    L + +AL+DMYAKCG + +AR +F+ M  +
Sbjct: 354 SVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK 413

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           N ++W+SMI   A HG  D AI LF++M+E+  + + ++F  VL AC H GLVE GQ+ F
Sbjct: 414 NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFF 473

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + M  +++I P+ EHY CMVDL  RA  L +A E+I+TM   P++ +WG+L+ AC+NHG 
Sbjct: 474 SSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGE 533

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYA 563
           IEL E AA  L ELEP+     ++L+++YA
Sbjct: 534 IELGEFAATRLLELEPDHDGALVVLSNIYA 563



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 123/282 (43%), Gaps = 29/282 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL   K +H     +G  R   I   LI  Y +C N+  AR +F+ +P+ N+  W ++  
Sbjct: 364 ALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMIN 423

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
           A+A  G    A+ +FH M  Q ++ N      VL AC H   +  G+K   S++ +H   
Sbjct: 424 AFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRIS 483

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS-----GYVQRG--LATE 263
                   ++D+Y +   + KA ++ + M    +++   +++S     G ++ G   AT 
Sbjct: 484 PQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATR 543

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
            L L      P     +V  + + +   +  D  +V K   LM+ KGV  +       ++
Sbjct: 544 LLEL-----EPDHDGALVVLSNIYAKEKRWDDVGLVRK---LMKHKGVSKEKACSRIEVN 595

Query: 324 GLVHNFC--------NDEAFDTFKEMLSQ----GFCPTSATI 353
             VH F         +DE +     ++SQ    G+ P+++ I
Sbjct: 596 NEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGI 637


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 177/535 (33%), Positives = 283/535 (52%), Gaps = 67/535 (12%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA+LI+  +     +A+KL+  Y++  ++  AR +FD+IP  N   + A+  +Y+  
Sbjct: 44  KQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLH 103

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LSDIGTGEKIHSLVLKHSFGTDAF 215
             H +A+ +F  +    L  NI  I  +LK+     LSD+  G+++H  VL+  F  D F
Sbjct: 104 NRHGDALDLFSSLASSNLVNNI-SITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVF 162

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-IGTP 274
           V ++LI  YSKC  ++ ++KVFD M ++D+V+ N+M+SGY Q GL  +   L  E +   
Sbjct: 163 VENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFS 222

Query: 275 RVKPNVVT-----------------------------------WNTLISGFSKSGDQVMV 299
             +PN VT                                    N LI  ++K G     
Sbjct: 223 GFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYA 282

Query: 300 SKLFQLMRAK--------------------------GVEPDVVS-WTSVISGLVHNFCND 332
            +LF  M  K                          G++  ++S W +VI+GLV N  ++
Sbjct: 283 RELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHE 342

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
              D  +EM + GF P + T+SS+L   A  ++++ GKEIH  AI +G   +++V +A++
Sbjct: 343 GVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAII 402

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
           DMYAK G++  A+ +FD+  +R+ V W ++I   A HG  + A+ LF++M ++  + D +
Sbjct: 403 DMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPV 462

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +FTAVL AC H G+V+    +F  M +KY I P  EHYAC+V  LG+A RL+EA E +  
Sbjct: 463 TFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSK 522

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  EP   VWGALL       ++EL +    +L E+EPE+  N +++ +LY+ AG
Sbjct: 523 MPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAG 577



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 154/333 (46%), Gaps = 40/333 (12%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTN------------------------------- 143
           +   LI  Y +C ++ +AR LFDE+ + +                               
Sbjct: 265 VCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQI 324

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
           +  W A+     +   H+  + +  EM   G + N   + SVL    + S +  G++IHS
Sbjct: 325 LSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHS 384

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
             +K  +  + +V +++IDMY+K G +  A++VFD+  ++ +V   A++S Y   G A  
Sbjct: 385 YAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANL 444

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVI 322
           AL L  E+    ++P+ VT+  +++  +  G      ++F+ M  K G++P V  +  V+
Sbjct: 445 ALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVV 504

Query: 323 SGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
             L       EA    KE +S+    P++    ++L   + ++++  GK +  C  +  +
Sbjct: 505 GALGKARRLSEA----KEFVSKMPIEPSAKVWGALLHGASISSDVELGKSV--CDYLFEI 558

Query: 382 EGDLHVRSALV-DMYAKCGFISEARTLFDKMSE 413
           E +      ++ ++Y++ G   EA  + ++M++
Sbjct: 559 EPENTGNYVIMANLYSQAGRWKEADEVRERMNK 591



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 41/207 (19%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK +H+  I  G  R   +AT +I  Y +   +  A+ +FD+    ++  W A+  
Sbjct: 375 SLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIIS 434

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AYA  G    A+ +FHEM  QG++ +     +VL AC H                     
Sbjct: 435 AYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAH--------------------- 473

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK----DIVAMNAMVSGYVQRGLATEALNLV 268
                         CG V+KA ++F+ M +K     +V   A V G +  G A       
Sbjct: 474 --------------CGMVDKAWEIFESMFKKYGIQPLVEHYACVVGAL--GKARRLSEAK 517

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGD 295
           E +    ++P+   W  L+ G S S D
Sbjct: 518 EFVSKMPIEPSAKVWGALLHGASISSD 544



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           + K++H   I+  V  + ++ S LV +Y+K   ++ AR +FD++  +NT ++N+M+   +
Sbjct: 42  QAKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYS 101

Query: 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL--VELGQRL 472
            H    +A++LF+ +     ++++S T +L +     L  V+LG+ +
Sbjct: 102 LHNRHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKEV 148


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 292/529 (55%), Gaps = 32/529 (6%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           +P+ + S+  S   + ER++   +   L   K LHAQ+I   L +   IA KLI+  + C
Sbjct: 5   LPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLC 64

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
           +  + A  +F+++ + N+H   +L  A+A      +A  VF EM   GL  + F  P +L
Sbjct: 65  RQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLL 124

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS--VEKAKKVFDEMVEKD 244
           KAC  LS +   + +H+ + K    +D +V ++LID YS+CG   V  A K+F++M E+D
Sbjct: 125 KACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD 184

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEI-------------GTPRVKP------------- 278
            V+ N+M+ G V+ G   +A  L +E+             G  R +              
Sbjct: 185 TVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPE 244

Query: 279 -NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
            N V+W+T++ G+SK+GD  M   +F  M       +VV+WT +I+G        EA   
Sbjct: 245 RNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPA--KNVVTWTIIIAGYAEKGLLKEADKL 302

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
             +M++ G    +A   SIL ACA +  +  G   H       +  +  V +AL+DMYAK
Sbjct: 303 VDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAK 362

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAV 456
           CG + +A  +F+ M +++ V+WN+M+ G   HG+  EAIELF++M +E    D ++F AV
Sbjct: 363 CGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAV 422

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L +C H GL++ G   F  M++ Y ++P+ EHY C+VDLLGR GRL EA ++++TM  EP
Sbjct: 423 LCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEP 482

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           ++ +WGALLGAC+ H  +++A+    +L +L+P    N  LL+++YA A
Sbjct: 483 NVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAA 531


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 176/519 (33%), Positives = 278/519 (53%), Gaps = 55/519 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L  G+ +H  +   G      +A  LI  Y+    +  AR LFD++P  ++  W A+ 
Sbjct: 186 QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMI 245

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
               + G   +A+ V  EM ++G+  +   + S+L  C  L DI T   IH  V+KH   
Sbjct: 246 SGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLE 305

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            + FV ++LI+MY+K G++  A+KVF +M  +D+V+ N++++ Y Q      A     ++
Sbjct: 306 FELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKM 365

Query: 272 GTPRVKPNVVTWNTLISGFSKS-------------------------GDQVM-------- 298
               ++P+++T  +L S  ++S                         G+ VM        
Sbjct: 366 QLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGV 425

Query: 299 ---VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-------LSQGFCP 348
                K+F L+  K    DVVSW ++ISG   N    EA + ++ M       L+QG   
Sbjct: 426 IDSAHKVFNLIPVK----DVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQG--- 478

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              T  SIL A A    +++G  IHG  I   +  D+ V + L+D+Y KCG + +A  LF
Sbjct: 479 ---TWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLF 535

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVE 467
            ++   ++V WN++I     HG+ ++A++LF +M+ E  K DH++F ++L+AC H GLV+
Sbjct: 536 YQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVD 595

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            G+  F++MQE Y I P  +HY CMVDLLGRAG L  AY+ IK M   PD  +WGALLGA
Sbjct: 596 EGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGA 654

Query: 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           C+ HGNIEL + A+  L E++ E+    +LL+++YAN G
Sbjct: 655 CRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVG 693



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 152/519 (29%), Positives = 257/519 (49%), Gaps = 54/519 (10%)

Query: 74  FHLSPAAYSERIEI-YIRDRALQS--GKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           FH    A +E I+   + D   ++   K LHA L+VSG  +   I+ +L+  Y    ++ 
Sbjct: 66  FHWRQPAKNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVS 125

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKAC 189
            +R  FD+I + +++ W ++  AY R G+ +EA+  F++ + +   + + +  P VLKAC
Sbjct: 126 LSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC 185

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
             L D   G KIH  V K  F  D FV +SLI MYS+ G V  A+ +FD+M  +D+ + N
Sbjct: 186 QTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWN 242

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW-------------------------- 283
           AM+SG +Q G A +AL++++E+    +  + VT                           
Sbjct: 243 AMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKH 302

Query: 284 ---------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                    N LI+ ++K G+     K+FQ M  +    DVVSW S+I+    N     A
Sbjct: 303 GLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLR----DVVSWNSIIAAYEQNDDPVTA 358

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVD 393
              F +M   G  P   T+ S+    A + + +  + +HG  +  G +   + + +A++D
Sbjct: 359 RGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMD 418

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLDHL 451
           MYAK G I  A  +F+ +  ++ V+WN++I G   +G   EAIE++  MEE +  KL+  
Sbjct: 419 MYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQG 478

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           ++ ++L A  HVG ++ G R+   +  K  +        C++DL G+ GRL +A  +   
Sbjct: 479 TWVSILAAYAHVGALQQGMRIHGHLI-KTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQ 537

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           +  E  +  W A++     HG+    E A K   E++ E
Sbjct: 538 VPRESSV-PWNAIISCHGIHGH---GEKALKLFREMQDE 572



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 17/274 (6%)

Query: 57  NGIFIEA--HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           NG+  EA   Y+M    R   L+   +   +  Y    ALQ G  +H  LI + L     
Sbjct: 454 NGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVF 513

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + T LI  Y +C  +  A  LF ++P+ +   W A+   +   G+ ++A+ +F EM  +G
Sbjct: 514 VGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEG 573

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +K +     S+L AC H   +  G+    L+ ++           ++D+  + G +E A 
Sbjct: 574 VKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAY 633

Query: 235 KVFDEM-VEKDIVAMNAM-----VSGYVQRG-LATEALNLVEEIGTPRVKPNVVTWNTLI 287
               +M +  D     A+     + G ++ G  A++ L  V+         NV  +  L 
Sbjct: 634 DFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDS-------ENVGYYVLLS 686

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           + ++  G    V K+  L R +G++     W+S+
Sbjct: 687 NIYANVGKWEGVDKVRSLARERGLKK-TPGWSSI 719


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 157/452 (34%), Positives = 255/452 (56%), Gaps = 11/452 (2%)

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
           E +    A  LFD++   ++  W ++   Y   G  +  + ++ +M   G+  ++  I S
Sbjct: 59  EGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIIS 118

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL  C     +  G+ +HSL +K SF       ++L+DMYSKCG ++ A +VF++M E++
Sbjct: 119 VLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 178

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +V+  +M++GY + G +  A+ L++++    VK +VV   +++   ++SG       +  
Sbjct: 179 VVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 238

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC----------PTSATIS 354
            ++A  +  ++    +++         + A   F  M+ +             P S T++
Sbjct: 239 YIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMA 298

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
            ILPACAS + + RGKEIHG  +  G   D HV +ALVD+Y KCG +  AR LFD +  +
Sbjct: 299 CILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 358

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V+W  MI G   HGY +EAI  FN+M +   + D +SF ++L AC H GL+E G R F
Sbjct: 359 DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF 418

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            +M+  + I P+ EHYACMVDLL R G L++AY+ I+T+   PD  +WGALL  C+ + +
Sbjct: 419 YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHD 478

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           IELAE  A+ + ELEPE+    +LL ++YA A
Sbjct: 479 IELAEKVAERVFELEPENTGYYVLLANIYAEA 510



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 181/369 (49%), Gaps = 26/369 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +H+  I S   R    +  L+  Y++C ++  A  +F+++ + N+  W ++   
Sbjct: 129 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 188

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y R G+   A+ +  +M  +G+K ++  I S+L AC     +  G+ +H  +  ++  ++
Sbjct: 189 YTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASN 248

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV--QRGLAT--------E 263
            FV ++L+DMY+KCGS+E A  VF  MV KDI++ N MV       R +A          
Sbjct: 249 LFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLS 308

Query: 264 ALNLVEEIGTPRVKPNVVT----WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
           AL   +EI    ++    +     N L+  + K G   +   LF ++ +K    D+VSWT
Sbjct: 309 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK----DLVSWT 364

Query: 320 SVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG-KEIHGCAI 377
            +I+G  +H + N EA  TF EM   G  P   +  SIL AC+ +  + +G +  +    
Sbjct: 365 VMIAGYGMHGYGN-EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 423

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAI 436
              +E  L   + +VD+ ++ G +S+A    + +    +   W +++ GC  +      I
Sbjct: 424 DFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIY----HDI 479

Query: 437 ELFNQMEER 445
           EL  ++ ER
Sbjct: 480 ELAEKVAER 488



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H  ++ +G +    +A  L+  Y +C  +  AR+LFD IP  ++  W  +  
Sbjct: 309 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 368

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   GY  EA+  F+EM   G++ +     S+L AC H   +  G +    ++K+ F  
Sbjct: 369 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNI 427

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG 254
           +  +   + ++D+ S+ G++ KA K  + + +  D     A++ G
Sbjct: 428 EPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 17/103 (16%)

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER----- 445
           LV  YA CG + E R +FD M ++N   WN M+   A  G   E+I LF  M E+     
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 446 ---------KKL---DHLSFTAVLTACCHVGLVELGQRLFNMM 476
                     KL   D +S+ ++++     GL E G  ++  M
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 104


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 163/509 (32%), Positives = 273/509 (53%), Gaps = 36/509 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ +H  ++  G      +A  LI  Y+    +  A  +F ++P  ++  W A+  
Sbjct: 162 SLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMIS 221

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            + + G   EA+ V   M  + +K +   + S+L  C   +D+  G  +H  V+KH   +
Sbjct: 222 GFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLES 281

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV ++LI+MYSK G ++ A++VFD M  +D+V+ N++++ Y Q      AL   +E+ 
Sbjct: 282 DVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEML 341

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQV---------------------------MVSKLFQL 305
              ++P+++T  +L S F +  D+                            M +KL  +
Sbjct: 342 FVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSI 401

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILP 358
             A+ V       DV+SW ++I+G   N    EA D +  M+ +G    P   T  SILP
Sbjct: 402 DCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYN-MMEEGRTIVPNQGTWVSILP 460

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A +    +++G +IHG  I   +  D+ V + L+DMY KCG + +A +LF ++ +  +V 
Sbjct: 461 AYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVP 520

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I     HG+ ++A++LF  M  +  K DH++F ++L+AC H GLV+  Q  F+ MQ
Sbjct: 521 WNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQ 580

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++Y+I P  +HY CMVDL GRAG L +AY ++  M  + D  +WG LL AC+ HGN EL 
Sbjct: 581 KEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELG 640

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
             A+  L E++ E+    +LL+++YAN G
Sbjct: 641 TFASDRLLEVDSENVGYYVLLSNIYANVG 669



 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 151/476 (31%), Positives = 252/476 (52%), Gaps = 40/476 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
            K LHA L+V G A+   + T+L+T Y    ++  +   F  I + NI  W ++  AY R
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 157 RGYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           RG +++++    E + + G++ + +  P VLKAC  L+D   GEK+H  VLK  F  D +
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVY 183

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V +SLI +YS+ G+VE A KVF +M  +D+ + NAM+SG+ Q G   EAL +++ + T  
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEE 243

Query: 276 VKPNVVTWNTLISGFSKSGDQV--------------------------MVSKLFQLMRAK 309
           VK + VT ++++   ++S D V                          M SK  +L  A+
Sbjct: 244 VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQ 303

Query: 310 ----GVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
               G+E  D+VSW S+I+    N     A   FKEML  G  P   T+ S+       +
Sbjct: 304 RVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLS 363

Query: 365 NMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           + R G+ +HG  +    +E D+ + +ALV+MYAK G I  AR +F+++  R+ ++WN++I
Sbjct: 364 DRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLI 423

Query: 424 FGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
            G A +G   EAI+ +N MEE + +  +  ++ ++L A  HVG ++ G ++   +  K  
Sbjct: 424 TGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLI-KNC 482

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +        C++D+ G+ GRL +A  +   +  E  +  W A++ +   HG+ E A
Sbjct: 483 LFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSV-PWNAIISSLGIHGHGEKA 537



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 40/291 (13%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           V ++C   ++I   +++H+L+L      D  +++ L+ +Y+  G +  +   F  +  K+
Sbjct: 57  VFRSC---TNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKN 113

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEE-IGTPRVKPNVVTWN------------------- 284
           I + N+MVS YV+RG   ++++ V E +    V+P+  T+                    
Sbjct: 114 IFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWV 173

Query: 285 -------------TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                        +LI  +S+ G   +  K+F  M  +    DV SW ++ISG   N   
Sbjct: 174 LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVR----DVGSWNAMISGFCQNGNV 229

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            EA      M ++     + T+SS+LP CA + ++  G  +H   I  G+E D+ V +AL
Sbjct: 230 AEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNAL 289

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
           ++MY+K G + +A+ +FD M  R+ V+WNS+I     +     A+  F +M
Sbjct: 290 INMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEM 340



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 3/187 (1%)

Query: 57  NGIFIEA--HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           NG+  EA   Y M    R+   +   +   +  Y    ALQ G  +H +LI + L     
Sbjct: 429 NGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVF 488

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +AT LI  Y +C  +  A  LF EIP+     W A+  +    G+ ++A+ +F +M   G
Sbjct: 489 VATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADG 548

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVEKA 233
           +K +     S+L AC H   +   +     + K +    +      ++D++ + G +EKA
Sbjct: 549 VKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKA 608

Query: 234 KKVFDEM 240
             +   M
Sbjct: 609 YNLVSNM 615


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 274/507 (54%), Gaps = 42/507 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++ +G      +   LI  Y+E  ++  AR+LFD+I   ++  W  +  +Y R
Sbjct: 143 GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   EA+ +  +MH+  +K +   + S+      L+D+  G+ +H+ V+++     + V
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGV 262

Query: 217 --VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
              ++LIDMY KC ++  A++VFD + +  I++  AM++ Y+      E + L  ++   
Sbjct: 263 PLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGE 322

Query: 275 RVKPNVVTWNTLI---------------------SGFS--------------KSGDQVMV 299
            + PN +T  +L+                     +GF+              K GD    
Sbjct: 323 GMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSA 382

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             +F   ++K    D++ W+++IS    N C DEAFD F  M   G  P   T+ S+L  
Sbjct: 383 RSVFDSFKSK----DLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMI 438

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA A ++  GK IH      G++GD+ ++++ VDMYA CG I  A  LF + ++R+   W
Sbjct: 439 CAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMW 498

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N+MI G A HG+ + A+ELF +ME      + ++F   L AC H GL++ G+RLF+ M  
Sbjct: 499 NAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVH 558

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           ++   P+ EHY CMVDLLGRAG L EA+E+IK+M   P++ V+G+ L ACK H NI+L E
Sbjct: 559 EFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGE 618

Query: 539 IAAKHLSELEPESAANNMLLTDLYANA 565
            AAK    LEP  +  N+L++++YA+A
Sbjct: 619 WAAKQFLSLEPHKSGYNVLMSNIYASA 645



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 207/424 (48%), Gaps = 40/424 (9%)

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L  +Y +     +A  ++  M     + + FVIPSVLKAC  +     G+++H  V+K+ 
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F  D FV ++LI MYS+ GS+  A+ +FD++  KD+V+ + M+  Y + GL  EAL+L+ 
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 270 EIGTPRVKPNVVTWNTLISGFS----------------------KSGDQV------MVSK 301
           ++   RVKP+ +   ++    +                      KSG  +      M  K
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 302 LFQLMRAKGV-----EPDVVSWTSVISGLVHNFCN--DEAFDTFKEMLSQGFCPTSATIS 354
              L  A+ V     +  ++SWT++I+  +H  CN  +E    F +ML +G  P   T+ 
Sbjct: 275 CENLAYARRVFDGLSKASIISWTAMIAAYIH--CNNLNEGVRLFVKMLGEGMFPNEITML 332

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++  C +A  +  GK +H   +  G    L + +A +DMY KCG +  AR++FD    +
Sbjct: 333 SLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSK 392

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           + + W++MI   A +   DEA ++F  M     + +  +  ++L  C   G +E+G+ + 
Sbjct: 393 DLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIH 452

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + + +K  I          VD+    G +  A+ +    +T+ D+ +W A++     HG+
Sbjct: 453 SYI-DKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAE-ATDRDISMWNAMISGFAMHGH 510

Query: 534 IELA 537
            E A
Sbjct: 511 GEAA 514



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 167/371 (45%), Gaps = 35/371 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA--TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           L+ GK +HA ++ +G    + +   T LI  Y +C+N+ +AR +FD + K +I  W A+ 
Sbjct: 241 LKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMI 300

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AY       E V +F +M  +G+  N   + S++K CG    +  G+ +H+  L++ F 
Sbjct: 301 AAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFT 360

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               + ++ IDMY KCG V  A+ VFD    KD++  +AM+S Y Q     EA ++   +
Sbjct: 361 LSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHM 420

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV--------------- 316
               ++PN  T  +L+   +K+G   M   +   +  +G++ D++               
Sbjct: 421 TGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDI 480

Query: 317 ----------------SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                            W ++ISG   +   + A + F+EM + G  P   T    L AC
Sbjct: 481 DTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHAC 540

Query: 361 ASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVT 418
           + +  ++ GK + H      G    +     +VD+  + G + EA  L   M  R N   
Sbjct: 541 SHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAV 600

Query: 419 WNSMIFGCANH 429
           + S +  C  H
Sbjct: 601 FGSFLAACKLH 611



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 4/279 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK+LHA  + +G      +AT  I  Y +C ++  AR +FD     ++  W A+  
Sbjct: 343 ALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMIS 402

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           +YA+     EA  +F  M   G++ N   + S+L  C     +  G+ IHS + K     
Sbjct: 403 SYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKG 462

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + +S +DMY+ CG ++ A ++F E  ++DI   NAM+SG+   G    AL L EE+ 
Sbjct: 463 DMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEME 522

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
              V PN +T+   +   S SG      +LF  M  + G  P V  +  ++  L      
Sbjct: 523 ALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLL 582

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           DEA +  K M  +   P  A   S L AC    N++ G+
Sbjct: 583 DEAHELIKSMPMR---PNIAVFGSFLAACKLHKNIKLGE 618


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 156/480 (32%), Positives = 260/480 (54%), Gaps = 46/480 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            +  K +H +++  G      I   LI  Y    ++  AR +F+E+P  ++  W +L   
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 154 YARRGYHQEAVTVFHEM------HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           Y   GY  EA+ ++++        +   K ++  I S+L+ACGHL D+  G+ +H  ++ 
Sbjct: 191 YNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 250

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             +  D    + LI+MY+KCG++  +++VF  M  KD V+ N+M++ Y+Q G   ++L +
Sbjct: 251 SGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKV 310

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
            E +       +++TWNT+I+    S D  +  ++   MR +GV PD+            
Sbjct: 311 FENMKA----RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDM------------ 354

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                                  AT+ SILP C+  A  R+GKEIHGC   +G+E D+ V
Sbjct: 355 -----------------------ATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 391

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            + L++MY+KCG +  +  +F  M  ++ VTW ++I  C  +G   +A+  F +ME    
Sbjct: 392 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 451

Query: 448 L-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + DH++F A++ AC H GLVE G   F+ M++ YKI PR EHYAC+VDLL R+  L +A 
Sbjct: 452 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 511

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + I +M  +PD  +WGALL AC+  G+ E+AE  ++ + EL P+     +L++++YA  G
Sbjct: 512 DFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALG 571



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 23/246 (9%)

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F + R      +V  W S+I  L HN    EA   + E       P + T  S++ ACA 
Sbjct: 68  FSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAG 127

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             +    K IH   + MG   DL++ +AL+DMY +   + +AR +F++M  R+ V+WNS+
Sbjct: 128 LLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSL 187

Query: 423 IFGCANHGYCDEAIE-------LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           I G   +GY +EA+E       LF +M  + K D L+ T++L AC H+G +E G+ + + 
Sbjct: 188 ISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDY 247

Query: 476 MQEKYKIMPRTEHYAC-------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           M         T  Y C       ++++  + G L  + E+   M  + D   W +++   
Sbjct: 248 MI--------TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVY 298

Query: 529 KNHGNI 534
             +G +
Sbjct: 299 IQNGKM 304



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 113/263 (42%), Gaps = 44/263 (16%)

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
           C      SSI  A ASAA   +  ++H   I +G+   +   + L+  YA     + + +
Sbjct: 10  CSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFS 69

Query: 407 LFDKMSERNTV-TWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVG 464
           +F   S  N V  WNS+I    ++G   EA+ L+++ +  R + D  +F +V+ AC  + 
Sbjct: 70  VFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 465 LVELGQRL-------------------------FNMMQEKYKI---MPRTE--HYACMVD 494
             E+ + +                         FN + +  K+   MP  +   +  ++ 
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 189

Query: 495 LLGRAGRLAEA----YEMIKTM-----STEPDLFVWGALLGACKNHGNIELAEIAAKHL- 544
                G   EA    Y+ IK         +PDL    ++L AC + G++E  +    ++ 
Sbjct: 190 GYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMI 249

Query: 545 -SELEPESAANNMLLTDLYANAG 566
            S  E ++ A+N+L+ ++YA  G
Sbjct: 250 TSGYECDTTASNILI-NMYAKCG 271


>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 167/480 (34%), Positives = 268/480 (55%), Gaps = 20/480 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ LH  ++ +G+     + + L++ Y++C N   A   F E+   +I  W ++  
Sbjct: 253 ALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMIS 312

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY+R G+  E + +F EM + G+  +  VI  +L +  +   +   +  H L+++  +  
Sbjct: 313 AYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTL 372

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA-----LNL 267
           D  V ++L+ MY K G ++ A+K F  + E++  A N MVSGY    LA         NL
Sbjct: 373 DQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGATHLARSIHCYMIKNL 432

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
           ++E        NV   N+LI  + KSG+  +  ++F       +  D+V+W ++IS   H
Sbjct: 433 MDE--------NVSVNNSLIDMYGKSGNLTIARRIFCR-----IPRDIVTWNTLISSYAH 479

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                EA   + +M+ +   P SAT+ S+L AC+  A++  G+++H        E +L +
Sbjct: 480 CGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEGEKVHNYINGGKFEFNLSI 539

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
            +AL+DMYAKCG + ++R +F+ M ER+ +TWN MI G   HG    AIE F QMEE   
Sbjct: 540 ATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSA 599

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           K + L+F AVL+AC H GLV+ G+ LF  MQ+ Y + P  +HYACMVDLLGR+G L EA 
Sbjct: 600 KPNGLTFLAVLSACAHAGLVKEGKYLFGKMQD-YSVAPNLKHYACMVDLLGRSGNLQEAE 658

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            ++ +M   PD  VWGALL +CK H  IE+    AKH  + + E+    ++++++Y++ G
Sbjct: 659 ALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIDSDVENDGYYVMISNMYSSIG 718



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 222/510 (43%), Gaps = 57/510 (11%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           HA +I SG +    IA+KLI+ Y        +  LFDEIP  +   W ++  A+   G +
Sbjct: 55  HAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSIIKAHFSNGEY 114

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSS 219
             A+  +  M       N F IP ++ +C  L  +  G  IH LV K   F   + V SS
Sbjct: 115 SRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLGLFSGSSAVGSS 174

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG---LATEALNLVEEIGTPRV 276
            + MYSKCG +E+A  VFDE++ +D+VA  A+V G VQ G   +  E L  +  IG    
Sbjct: 175 FVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIGGDGE 234

Query: 277 KPNVVTWNTLISGFSKSGD----------------------QVMVSKLFQLMRAKG---- 310
           +PN   + TL  GF   G+                      QV+ S L  +    G    
Sbjct: 235 RPN---FRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEE 291

Query: 311 --------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                   +  D++SWTS+IS         E  D F EML  G  P    IS +L + ++
Sbjct: 292 AHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSN 351

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
           +  +   K  HG  I      D  V++AL+ MY K GF+  A   F +++E+N   WN M
Sbjct: 352 SMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLM 411

Query: 423 I--FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +  +G  +         + N M+E   +++    +++      G + + +R+F       
Sbjct: 412 VSGYGATHLARSIHCYMIKNLMDENVSVNN----SLIDMYGKSGNLTIARRIF------C 461

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACKNHGNIELA 537
           +I      +  ++      G  AEA  +   M  E   P+     ++L AC +  ++E  
Sbjct: 462 RIPRDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEG 521

Query: 538 EIAAKHLSELEPE-SAANNMLLTDLYANAG 566
           E    +++  + E + +    L D+YA  G
Sbjct: 522 EKVHNYINGGKFEFNLSIATALIDMYAKCG 551



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 227/475 (47%), Gaps = 36/475 (7%)

Query: 97  GKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G+ +H  +   GL +  + + +  +  Y++C  +  A  +FDEI   ++  W AL     
Sbjct: 152 GRSIHGLVSKLGLFSGSSAVGSSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCV 211

Query: 156 RRGYHQEAVTVFHEMHI---QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           + G  +  +    EMH     G + N   +    +ACG+L  +  G  +H LV+K     
Sbjct: 212 QNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDY 271

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              V S L+ MYSKCG+ E+A + F E++ KDI++  +M+S Y + G ATE +++  E+ 
Sbjct: 272 SQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEML 331

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN---- 328
              + P+ +  + ++S FS S          ++  AK     ++     +  +V N    
Sbjct: 332 VSGIYPDGIVISCMLSSFSNS---------MRVFEAKAFHGLIIRRHYTLDQMVQNALLS 382

Query: 329 -FCN----DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
            +C       A   F  +  Q F   +  +S        A ++ R   IH   I   ++ 
Sbjct: 383 MYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGY-----GATHLAR--SIHCYMIKNLMDE 435

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           ++ V ++L+DMY K G ++ AR +F ++  R+ VTWN++I   A+ G+  EA+ L+++M 
Sbjct: 436 NVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMV 494

Query: 444 -ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
            E  K +  +  +VL+AC H+  +E G+++ N +    K          ++D+  + G+L
Sbjct: 495 LEDLKPNSATLVSVLSACSHLASLEEGEKVHNYINGG-KFEFNLSIATALIDMYAKCGQL 553

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
            ++ E+  +M  E D+  W  ++     HG+   A  A +   ++E  SA  N L
Sbjct: 554 EKSREIFNSMH-ERDVITWNVMISGYGMHGD---ARSAIEFFQQMEESSAKPNGL 604



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 159/324 (49%), Gaps = 9/324 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A    + +H  +I + +     +   LI  Y +  N+  AR +F  IP+ +I  W  L  
Sbjct: 417 ATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIPR-DIVTWNTLIS 475

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           +YA  G+  EA++++ +M ++ LK N   + SVL AC HL+ +  GEK+H+ +    F  
Sbjct: 476 SYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEGEKVHNYINGGKFEF 535

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  + ++LIDMY+KCG +EK++++F+ M E+D++  N M+SGY   G A  A+   +++ 
Sbjct: 536 NLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQME 595

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS--GLVHNFC 330
               KPN +T+  ++S  + +G       LF  M+   V P++  +  ++   G   N  
Sbjct: 596 ESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVDLLGRSGNLQ 655

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA      +LS    P      ++L +C     +  G  I   AI   VE D +    
Sbjct: 656 EAEAL-----VLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIDSDVENDGYY-VM 709

Query: 391 LVDMYAKCGFISEARTLFDKMSER 414
           + +MY+  G   EA      M ER
Sbjct: 710 ISNMYSSIGKWEEAEKARGIMKER 733


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 170/521 (32%), Positives = 276/521 (52%), Gaps = 36/521 (6%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           S + Y+  I+     R L     +H +L++SGL     + TKL+   +    I +AR LF
Sbjct: 55  SDSFYASLIDNSTHKRHLDQ---IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLF 111

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           DE    ++  W A+  +Y+R   +++ V ++  M   G+  + F  P VLKAC  L D G
Sbjct: 112 DEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFG 171

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
               IH  ++K+ FG+D FV + L+ +Y+KCG +  AK VFD +  + IV+  +++SGY 
Sbjct: 172 LSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYA 231

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE---- 312
           Q G A EAL +  ++    VKP+ +   +++  ++   D      +   +   G+E    
Sbjct: 232 QNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPA 291

Query: 313 ---------------------------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                                       +V+ W ++ISG   N   +EA + F  M+S+ 
Sbjct: 292 LLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRN 351

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P S T+ S + A A   ++   + +           D+ V ++L+DMYAKCG +  AR
Sbjct: 352 IKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFAR 411

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVG 464
            +FD+ S+++ V W++MI G   HG   EAI L++ M++     + ++F  +LTAC H G
Sbjct: 412 RVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSG 471

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           LV+ G  LF+ M++ ++I+PR EHY+C+VDLLGRAG L EA   I  +  EP + VWGAL
Sbjct: 472 LVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGAL 530

Query: 525 LGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           L ACK +  + L E AA  L  L+P +  + + L++LYA++
Sbjct: 531 LSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASS 571


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 269/506 (53%), Gaps = 32/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK  H+  I +G++    +   L+  Y +C +I  A   F      N+  W  +  
Sbjct: 387 ALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLV 446

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY       E+  +F +M ++G++ N F  PS+L+ C  L  +  GE+IH+ VLK  F  
Sbjct: 447 AYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQF 506

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + +V S LIDMY+K G ++ A K+F  + EKD+V+  AM++GY Q     EALNL +E+ 
Sbjct: 507 NVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQ 566

Query: 273 TPRVKPNVVTWNTLISG------------------FSKSGDQVMVSKLFQLMRA------ 308
              +  + + + + IS                    S   D + V      + A      
Sbjct: 567 DQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVR 626

Query: 309 -------KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                  K    D +SW S+ISG   +   +EA   F +M   G    S T    + A A
Sbjct: 627 DAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAA 686

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + AN++ GK+IH   I  G + +  V + L+ +YAKCG I +A   F +M E+N ++WN+
Sbjct: 687 NVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNA 746

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+ G + HG+  +A+ LF  M++   L +H++F  VL+AC HVGLV+ G + F  M+E +
Sbjct: 747 MLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVH 806

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            ++P+ EHYAC+VDLLGR+G L+ A   ++ M  +PD  V   LL AC  H NI++ E A
Sbjct: 807 GLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFA 866

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A HL ELEP+ +A  +LL+++YA  G
Sbjct: 867 ASHLLELEPKDSATYVLLSNMYAVTG 892



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 239/489 (48%), Gaps = 34/489 (6%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P  +S  +    +    + G+ LH  ++  G +  T +   L+T Y+   N   A  +F
Sbjct: 270 TPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVF 329

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           + + + +   + +L    +++GY  +A+ +F +M +  LK +   + S+L AC  +  + 
Sbjct: 330 NAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALL 389

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
            G++ HS  +K    +D  +  +L+D+Y KC  ++ A + F     +++V  N M+  Y 
Sbjct: 390 VGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYG 449

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----------------KSGDQV--- 297
                 E+  +  ++    ++PN  T+ +++   S                K+G Q    
Sbjct: 450 LLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVY 509

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                  M +KL +L  A  +     E DVVSWT++I+G   +    EA + FKEM  QG
Sbjct: 510 VSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQG 569

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
               +   +S + ACA    + +G++IH  A V G   DL V +ALV +YA+CG + +A 
Sbjct: 570 IHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAY 629

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVG 464
             FDK+  ++ ++WNS+I G A  G+C+EA+ LF+QM +  ++++  +F   ++A  +V 
Sbjct: 630 FAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVA 689

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
            V+LG+++  M+  K      TE    ++ L  + G + +A      M  E +   W A+
Sbjct: 690 NVKLGKQIHAMII-KTGHDSETEVSNVLITLYAKCGNIDDAERQFFEM-PEKNEISWNAM 747

Query: 525 LGACKNHGN 533
           L     HG+
Sbjct: 748 LTGYSQHGH 756



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 223/484 (46%), Gaps = 42/484 (8%)

Query: 87  IYIRDRALQSGKI-----LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK 141
           +++ D  L SG       LH +++  G      +  +L+  Y    ++  A  +FDE+P 
Sbjct: 72  LWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPV 131

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG--TGE 199
             +  W  +   +         + +F  M  + +K +      VL+ CG   D+     E
Sbjct: 132 RPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG-GDVPFHCVE 190

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           KIH+  + H +    FV + LID+Y K G +  AKKVFD + ++D V+  AM+SG  Q G
Sbjct: 191 KIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSG 250

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISG-----FSKSGDQV----------------- 297
              EA+ L  ++ T  V P    +++++S      F K G+Q+                 
Sbjct: 251 CEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCN 310

Query: 298 ----MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
               + S+L   + A+ V     + D VS+ S+ISGL     +D+A + FK+M      P
Sbjct: 311 ALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKP 370

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              T++S+L AC+S   +  GK+ H  AI  G+  D+ +  AL+D+Y KC  I  A   F
Sbjct: 371 DCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFF 430

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVE 467
                 N V WN M+         +E+ ++F QM+ E  + +  ++ ++L  C  +  V+
Sbjct: 431 LSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVD 490

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           LG+++   +  K          + ++D+  + G+L  A ++ + +  E D+  W A++  
Sbjct: 491 LGEQIHTQVL-KTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAG 548

Query: 528 CKNH 531
              H
Sbjct: 549 YAQH 552



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 194/419 (46%), Gaps = 49/419 (11%)

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC---GHLSDIGTGEKIHSLV 205
           AL+ AY+        +   H M  +G++ N      +L  C   G  SD   G K+H  +
Sbjct: 38  ALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSD---GWKLHGKI 94

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           LK  F  +  +   L+D+Y   G ++ A  VFDEM  + +   N ++  +V   +A   L
Sbjct: 95  LKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVL 154

Query: 266 NLVEEIGTPRVKPNVVTW------------------------------------NTLISG 289
            L   +   +VKP+  T+                                    N LI  
Sbjct: 155 GLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDL 214

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           + K+G      K+F  ++ +    D VSW +++SGL  + C +EA   F +M + G  PT
Sbjct: 215 YFKNGFLNSAKKVFDGLQKR----DSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPT 270

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
               SS+L AC      + G+++HG  +  G   + +V +ALV +Y++ G    A  +F+
Sbjct: 271 PYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFN 330

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVEL 468
            M +R+ V++NS+I G +  GY D+A+ELF +M  +  K D ++  ++L+AC  VG + +
Sbjct: 331 AMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLV 390

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           G++ F+    K  +         ++DL  +   +  A+E   +  TE ++ +W  +L A
Sbjct: 391 GKQ-FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVA 447



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 147/280 (52%), Gaps = 4/280 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL  G+ +HAQ  VSG +    +   L++ Y  C  +  A   FD+I   +   W +L 
Sbjct: 588 QALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLI 647

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +A+ G+ +EA+++F +M   G + N F     + A  +++++  G++IH++++K    
Sbjct: 648 SGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHD 707

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V + LI +Y+KCG+++ A++ F EM EK+ ++ NAM++GY Q G   +AL+L E++
Sbjct: 708 SETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDM 767

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR-AKGVEPDVVSWTSVISGLVHNFC 330
               V PN VT+  ++S  S  G      K FQ MR   G+ P    +  V+  L  +  
Sbjct: 768 KQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGL 827

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
              A    +EM  Q   P +    ++L AC    N+  G+
Sbjct: 828 LSRARRFVEEMPIQ---PDAMVCRTLLSACIVHKNIDIGE 864


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 277/546 (50%), Gaps = 76/546 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLI---TFYTECQNIHHARMLFDEIPKTNIHRWI 148
           + LQS +I+HAQ+I +GL       +KL+           + +A  +FD I +  +  W 
Sbjct: 13  KTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWN 72

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            +   +A       A+ ++  M   GL  N +  P +LK+C        G+++H  VLK 
Sbjct: 73  TMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKF 132

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKV-------------------------------F 237
            F  D ++ +SLI MY + G +E A+KV                               F
Sbjct: 133 GFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMF 192

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------------------ 279
           DE+  KD+V+ NA +SGY + G   EAL L +++    V+P+                  
Sbjct: 193 DEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIE 252

Query: 280 ----VVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
               V +W             N LI  +SK G+      LFQ +  K    DV+SW ++I
Sbjct: 253 LGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNK----DVISWNTLI 308

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMG 380
            G  H     EA   F++ML  G  P   T+ SIL ACA    +  G+ IH      + G
Sbjct: 309 GGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKG 368

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           V     +R++L+DMYAKCG I  A+ +FD M  R+  +WN+MIFG A HG  + A ++F+
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFS 428

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M +   + D ++F  +L+AC H G+++LG+ +F  M   YK+MP+ EHY CM+DL G +
Sbjct: 429 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHS 488

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G   EA +MI TM  EPD  +W +LL ACK HGN+EL E  A++L ++EPE+  + +LL+
Sbjct: 489 GLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLS 548

Query: 560 DLYANA 565
           ++YA A
Sbjct: 549 NIYATA 554



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 186/431 (43%), Gaps = 58/431 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS +      ++G          ++   F L    ++  I +Y+     Q+G++
Sbjct: 109 LLKSCAKSXAFKEGQQLHG---------QVLKFGFDLDLYIHTSLISMYV-----QNGRL 154

Query: 100 LHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
             AQ +    +    ++ T LIT Y     I  A  +FDEIP  ++  W A    YA  G
Sbjct: 155 EDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETG 214

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            ++EA+ +F +M    ++ +   + +VL AC     I  G ++HS +  H FG +  +V+
Sbjct: 215 NYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVN 274

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +LID+YSKCG +E A  +F  +  KD+++ N ++ GY    L  EAL L +++     KP
Sbjct: 275 ALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKP 334

Query: 279 NVVT------------------W-------------------NTLISGFSKSGDQVMVSK 301
           N VT                  W                    +LI  ++K GD     +
Sbjct: 335 NDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQ 394

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M  + +     SW ++I G   +   + AFD F  M   G  P   T   +L AC+
Sbjct: 395 VFDSMLNRSLS----SWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 450

Query: 362 SAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTW 419
            +  +  G+ I         +   L     ++D+    G   EA  + + M  E + V W
Sbjct: 451 HSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIW 510

Query: 420 NSMIFGCANHG 430
            S++  C  HG
Sbjct: 511 CSLLKACKMHG 521


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/417 (40%), Positives = 241/417 (57%), Gaps = 37/417 (8%)

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
           P V+KACG L D   G+KIH LVLK  F  D FV +SL+ MYS+ G V  A+K+FD+M  
Sbjct: 1   PPVVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           +D  + NAM+SGY Q G A EAL++ +E+    VK + +T  +++   ++ GD ++  KL
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGD-ILSGKL 116

Query: 303 FQLMRAK-GVE------------------------------PDVVSWTSVISGLVHNFCN 331
             L   K G+E                               DVVSW ++I+G   N   
Sbjct: 117 IHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIKDVVSWNTLITGYAQNGLA 176

Query: 332 DEAFDTFKEMLS-QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            EA + +  M   +   P   T  SILPA +    +++G  IHG  I   +  D+ V + 
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLD 449
           L+DMY KCG + +A +LF ++  +N+V WN+MI     HG  ++A+ELF +M+ ER K D
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           H++F ++L+AC H GLV   Q  FNMM+E+Y I P  +HY CMVDL GRAG L  A+  I
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI 356

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           K M  +PD   WGALL AC+ HGNIEL + A++ L E++ E+    +LL+++YAN G
Sbjct: 357 KKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVG 413



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 183/391 (46%), Gaps = 49/391 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +H  ++  G      +A  L+  Y+    +  AR LFD++P  +   W A+   
Sbjct: 10  LLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISG 69

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G   EA+ +  EM ++G+K +   + SVL  C  + DI +G+ IH  V+KH    +
Sbjct: 70  YCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFE 129

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN---LVEE 270
            FV ++LI+MY+K GS+  A+KVF  ++ KD+V+ N +++GY Q GLA+EA+    L+EE
Sbjct: 130 LFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEE 188

Query: 271 IGTPRVKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV 311
                + PN  TW +++  +S  G                   D  + + L  +    G 
Sbjct: 189 --HEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGK 246

Query: 312 EPDVVS------------WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             D +S            W ++IS    +   ++A + F+EM ++   P   T  S+L A
Sbjct: 247 LDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSA 306

Query: 360 CASAANMRRGKEIHGCAIVM----GVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           C+ +  +    +   C  +M    G++  L     +VD++ + G +  A     KM  + 
Sbjct: 307 CSHSGLV---SDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQP 363

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           +   W +++  C  HG     IEL     ER
Sbjct: 364 DASAWGALLNACRIHG----NIELGKHASER 390



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 12/236 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  +H Q+I + L     + T LI  Y +C  +  A  LF ++P+ N   W A+  
Sbjct: 211 ALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMIS 270

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G  ++A+ +F EM  + +K +     S+L AC H   +   +   ++ ++  +G 
Sbjct: 271 CYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNM-MEEEYGI 329

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALN 266
              +     ++D++ + G +E A     +M ++ D  A  A+++     G   L   A  
Sbjct: 330 KPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASE 389

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
            + E+ +  V   V+  N     ++  G    V  +  L R +G+  +   W+S+I
Sbjct: 390 RLFEVDSENVGYYVLLSNI----YANVGKWEGVDDVRSLARDRGLRKN-PGWSSII 440


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 279/535 (52%), Gaps = 66/535 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L+ GK LH   +  G  + T     L+  Y +   +  ++ LF+     ++  W  +  
Sbjct: 212 GLRLGKQLHGYSLRVGDQK-TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMIS 270

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FG 211
           ++++     EA+  F  M ++G++ +   I SVL AC HL  +  G++IH+ VL+++   
Sbjct: 271 SFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLI 330

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL-VEE 270
            ++FV S+L+DMY  C  VE  ++VFD ++ + I   NAM+SGY + GL  +AL L +E 
Sbjct: 331 ENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEM 390

Query: 271 IGTPRVKPNVVTW-----------------------------------NTLISGFSKSGD 295
           I    + PN  T                                    N L+  +S+ G 
Sbjct: 391 IKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGK 450

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-------------- 341
             +   +F  M  +    D VSW ++I+G V +     A     EM              
Sbjct: 451 MDISETIFDSMEVR----DRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDN 506

Query: 342 ---LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
                  + P + T+ ++LP CA+ A + +GKEIH  AI   +  D+ V SALVDMYAKC
Sbjct: 507 DDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKC 566

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE------RKKLDHLS 452
           G ++ +R +F++M  +N +TWN +I  C  HG  +EA+ELF  M          K + ++
Sbjct: 567 GCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVT 626

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  V  AC H GL+  G  LF  M+  + + P ++HYAC+VDLLGRAG+L EAYE++ TM
Sbjct: 627 FITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTM 686

Query: 513 STEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             E D +  W +LLGAC+ H N+EL E+AAK+L  LEP  A++ +LL+++Y++AG
Sbjct: 687 PAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAG 741



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 176/361 (48%), Gaps = 39/361 (10%)

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P  +   W+    +  R    +EA++ + EM + G + + F  P+VLKA   L D+ TGE
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 200 KIHSLVLKHSFGTDAFVVS-SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +IH+  +K  +G+ +  V+ +L++MY KCG +    KVFD + ++D V+ N+ ++   + 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTL------------------ISGFS-KSGDQ--- 296
               +AL     +    ++ +  T  ++                  + G+S + GDQ   
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF 232

Query: 297 ------VMVSKLFQLMRAKG-----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                  M +KL ++  +K      V+ D+VSW ++IS    +    EA   F+ M+ +G
Sbjct: 233 TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG 292

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISE 403
                 TI+S+LPAC+    +  GKEIH   +     +E    V SALVDMY  C  +  
Sbjct: 293 VELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSF-VGSALVDMYCNCRQVES 351

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACC 461
            R +FD +  R    WN+MI G A +G  ++A+ LF +M +   L  +  +  +V+ AC 
Sbjct: 352 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACV 411

Query: 462 H 462
           H
Sbjct: 412 H 412



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 146/344 (42%), Gaps = 33/344 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A  + + +H   +  G      +   L+  Y+    +  +  +FD +   +   W  +  
Sbjct: 415 AFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 153 AYARRGYHQEAVTVFHEMHIQ-----------------GLKQNIFVIPSVLKACGHLSDI 195
            Y   G +  A+ + HEM                      K N   + +VL  C  L+ I
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G++IH+  +++   +D  V S+L+DMY+KCG +  +++VF+EM  K+++  N ++   
Sbjct: 535 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 594

Query: 256 VQRGLATEAL----NLVEEIGT-PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK- 309
              G   EAL    N+V E G     KPN VT+ T+ +  S SG       LF  M+   
Sbjct: 595 GMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDH 654

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
           GVEP    +  V+  L      +EA++    M ++ F    A  SS+L AC    N+  G
Sbjct: 655 GVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAE-FDKVGA-WSSLLGACRIHQNVELG 712

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +        +  +  LH+   +   Y     I  +  L++K  E
Sbjct: 713 E--------VAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAME 748



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
           SW   +     +    EA  T+ EM   G  P +    ++L A +   +++ G++IH  A
Sbjct: 59  SWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118

Query: 377 IVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
           +  G     + V + LV+MY KCG I +   +FD++++R+ V+WNS I         ++A
Sbjct: 119 VKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQA 178

Query: 436 IELFNQME-ERKKLDHLSFTAVLTACCHVGL---VELGQRL 472
           +E F  M+ E  +L   +  +V  AC ++G+   + LG++L
Sbjct: 179 LEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQL 219



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 121/283 (42%), Gaps = 25/283 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  GK +HA  I + LA    + + L+  Y +C  ++ +R +F+E+P  N+  W  L  
Sbjct: 533 AIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIM 592

Query: 153 AYARRGYHQEAVTVFHEMHIQG-----LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           A    G  +EA+ +F  M  +       K N     +V  AC H   I  G  +    +K
Sbjct: 593 ACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF-YRMK 651

Query: 208 HSFGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEA 264
           H  G +      + ++D+  + G +E+A ++ + M  E D V   + + G  +     E 
Sbjct: 652 HDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVE- 710

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVI 322
           L  V       ++PNV +   L+S  +S +G      ++ + MR  GV+ +   SW    
Sbjct: 711 LGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE-F 769

Query: 323 SGLVHNFC-------NDEAFDTFKEMLS-----QGFCPTSATI 353
              VH F          E    F E LS     +G+ P ++ +
Sbjct: 770 RDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCV 812


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 265/477 (55%), Gaps = 32/477 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTE--CQNIHHARMLFDEIPKTNIHRWIAL 150
           A Q  + LHA  + + +     ++++L+  Y++    ++ +AR +FD I + ++  W  +
Sbjct: 28  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 87

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              Y    +  + + +FHE+  + L  N F +P V+K C  L  +  G++IH L LK  F
Sbjct: 88  IKCYVENQFSHDGIVLFHELVHEYLPDN-FTLPCVIKGCARLGVVQEGKQIHGLALKIGF 146

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           G+D FV  SL++MYSKCG ++ A+KVFD M++KD+V  N+++ G                
Sbjct: 147 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG---------------- 190

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                   N+V+WN +I+G+ KSGD     +LF  M       D+V+W  +I+G   N  
Sbjct: 191 --------NLVSWNAMINGYMKSGDFDSALELFYQMPIW----DLVTWNLMIAGYELNGQ 238

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             +A   F  ML  G  P+ AT+ S+L A +  A + +G+ IH      G E D  + ++
Sbjct: 239 FMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTS 298

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLD 449
           L++MYAKCG I  A T+F  + ++    W ++I G   HG  + A+ LF +M +   K +
Sbjct: 299 LIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPN 358

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            + F  VL AC H GLV+ G++ F+MM  +YKI P  EHY C+VD+L RAG L EA   I
Sbjct: 359 AIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTI 418

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + M   P+  +W +LLG  +NHG I++ E AA+ + E+ PE+    +LL+++YA +G
Sbjct: 419 ENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASG 475


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 278/555 (50%), Gaps = 82/555 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G+  HA  +V+G      +   L+  Y+ C+++  AR +FDE+   ++  W ++  
Sbjct: 142 SVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIE 201

Query: 153 AYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           +YA+ G  + A+ +F  M  + G + +   + +VL  C  L     G+++H   +     
Sbjct: 202 SYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMI 261

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV------------------- 252
            + FV + L+DMY+KCG +++A  VF  M  KD+V+ NAMV                   
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321

Query: 253 ----------------SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK---- 292
                           SGY QRGL  EAL +  ++ +  +KPN VT  +++SG +     
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 293 ---------------------SGDQVMVSKLFQLMRAK---------------GVEPDVV 316
                                 GD+ MV      M AK                 E DVV
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFC---PTSATISSILPACASAANMRRGKEIH 373
           +WT +I G   +   ++A +   EM  +  C   P + TIS  L ACAS A +R GK+IH
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEED-CQTRPNAFTISCALVACASLAALRIGKQIH 500

Query: 374 GCAIVMGVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
             A+        L V + L+DMYAKCG IS+AR +FD M  +N VTW S++ G   HGY 
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           +EA+ +F++M     KLD ++   VL AC H G+++ G   FN M+  + + P  EHYAC
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           +VDLLGRAGRL  A  +I+ M  EP   VW A L  C+ HG +EL E AA+ ++EL    
Sbjct: 621 LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNH 680

Query: 552 AANNMLLTDLYANAG 566
             +  LL++LYANAG
Sbjct: 681 DGSYTLLSNLYANAG 695



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 141/528 (26%), Positives = 243/528 (46%), Gaps = 85/528 (16%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN--IHRWIA 149
           + +   K++H +L+  G+  L  + + LI+ Y     + HA  L    P ++  ++ W +
Sbjct: 39  KTISQVKLIHQKLLSFGILTL-NLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L  +Y   G   + + +F  MH      + +  P V KACG +S +  GE  H+L L   
Sbjct: 98  LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL---- 265
           F ++ FV ++L+ MYS+C S+  A+KVFDEM   D+V+ N+++  Y + G    AL    
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFS 217

Query: 266 NLVEEIG--------------------------------TPRVKPNVVTWNTLISGFSKS 293
            +  E G                                T  +  N+   N L+  ++K 
Sbjct: 218 RMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277

Query: 294 G---------------DQV----MVSKLFQL------------MRAKGVEPDVVSWTSVI 322
           G               D V    MV+   Q+            M+ + ++ DVV+W++ I
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           SG        EA    ++MLS G  P   T+ S+L  CAS   +  GKEIH  AI   ++
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397

Query: 383 ------GDLH-VRSALVDMYAKCGFISEARTLFDKMS--ERNTVTWNSMIFGCANHGYCD 433
                 GD + V + L+DMYAKC  +  AR +FD +S  ER+ VTW  MI G + HG  +
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 434 EAIELFNQMEE---RKKLDHLSFTAVLTACCHVGLVELGQRLFNM-MQEKYKIMPRTEHY 489
           +A+EL ++M E   + + +  + +  L AC  +  + +G+++    ++ +   +P     
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS- 516

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            C++D+  + G +++A  +   M  + ++  W +L+     HG  E A
Sbjct: 517 NCLIDMYAKCGSISDARLVFDNMMAKNEV-TWTSLMTGYGMHGYGEEA 563



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 7/254 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATK-LITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           AL+ GK +HA  + +    +    +  LI  Y +C +I  AR++FD +   N   W +L 
Sbjct: 492 ALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLM 551

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   GY +EA+ +F EM   G K +   +  VL AC H   I  G +  +  +K  FG
Sbjct: 552 TGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR-MKTVFG 610

Query: 212 TDAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLV 268
                   + L+D+  + G +  A ++ +EM +E   V   A +S     G         
Sbjct: 611 VSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAA 670

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVH 327
           E+I T     +  ++  L + ++ +G    V+++  LMR KGV+     SW   I G   
Sbjct: 671 EKI-TELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTT 729

Query: 328 NFCNDEAFDTFKEM 341
            F  D+     KE+
Sbjct: 730 FFVGDKTHPHAKEI 743


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/478 (34%), Positives = 261/478 (54%), Gaps = 41/478 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK ++  ++  G    + +   ++  + +C  +  AR  F+EI   ++  W  +   Y  
Sbjct: 130 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 189

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAF 215
           +G  ++A+ VF +M ++G+K N   I S + AC +LS +  G +IH   +K     +D  
Sbjct: 190 KGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 249

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V +SL+D Y+KC SVE A++ F  + + D+V+ NAM++                      
Sbjct: 250 VGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA---------------------- 287

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR------AKGVEPDVVSWTSVISGLVHNF 329
                      ++GF++ GD     + FQ M       ++    DVV W S+IS    + 
Sbjct: 288 -----------VTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSG 336

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
            +  A D  +EM        + T+ S LPAC+  A +R+GKEIH   I  G++    + +
Sbjct: 337 RSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILN 396

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           +L+DMY +CG I ++R +FD M +R+ V+WN MI     HG+  +A+ LF Q      K 
Sbjct: 397 SLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKP 456

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           +H++FT +L+AC H GL+E G + F MM+ +Y + P  E YACMVDLL RAG+  E  E 
Sbjct: 457 NHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEF 516

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I+ M  EP+  VWG+LLGAC+ H N +LAE AA++L ELEP+S+ N +L+ ++Y+ AG
Sbjct: 517 IEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 574



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 147/358 (41%), Gaps = 72/358 (20%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M +    + I +  S+L+ C  L ++  G ++H+ ++ +      F+ S L+++Y + G 
Sbjct: 1   MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
           VE A+++FD+M E+                                   NV +W  ++  
Sbjct: 61  VEDARRMFDKMSER-----------------------------------NVFSWTAIMEM 85

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           +   GD     KLF LM  +GV PD                                   
Sbjct: 86  YCGLGDYEETIKLFYLMVNEGVRPD----------------------------------- 110

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
                 +  AC+   N R GK+++   + +G EG+  V+ +++DM+ KCG +  AR  F+
Sbjct: 111 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 170

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVEL 468
           ++  ++   WN M+ G  + G   +A+ +F +M  E  K + ++  + ++AC ++ L+  
Sbjct: 171 EIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRH 230

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           G+ +     +  ++         +VD   +  R  E       M  + DL  W A+L 
Sbjct: 231 GREIHGYCIKVEELDSDLLVGNSLVDYYAKC-RSVEVARRKFGMIKQTDLVSWNAMLA 287



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H  +I  GL     I   LI  Y  C +I  +R +FD +P+ ++  W  +  
Sbjct: 372 ALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMIS 431

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G+  +AV +F +    GLK N     ++L AC H   I  G K   + +K  +  
Sbjct: 432 VYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKM-MKTEYAM 490

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG--------YVQRGLAT 262
           D  V   + ++D+ S+ G   +      E +EK     NA V G        +    LA 
Sbjct: 491 DPAVEQYACMVDLLSRAGQFNETL----EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAE 546

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPDVVSWTSV 321
            A   + E+  P+   N V    +   +S +G     +K+  LM+ +GV +P   SW  V
Sbjct: 547 YAARYLFEL-EPQSSGNYVLMANI---YSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 602

Query: 322 ISGLVHNF 329
              L H+F
Sbjct: 603 KRKL-HSF 609



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 11/189 (5%)

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +SIL  C    N+R G ++H   +V GV+    + S L+++Y + G + +AR +FDKMSE
Sbjct: 14  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 73

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           RN  +W +++      G  +E I+LF  M  E  + DH  F  V  AC  +    +G+ +
Sbjct: 74  RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 133

Query: 473 FNMMQEKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           ++     Y +    E  +C    ++D+  + GR+  A    + +  + D+F+W  ++   
Sbjct: 134 YD-----YMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSGY 187

Query: 529 KNHGNIELA 537
            + G  + A
Sbjct: 188 TSKGEFKKA 196


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/478 (34%), Positives = 269/478 (56%), Gaps = 22/478 (4%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYT--------ECQNIHHARMLFDEIPKTNIHRWIALT 151
           +HA +IV+G         KL+                  +A  +F +IP+ +   W    
Sbjct: 20  IHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTFMWNTYI 79

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
              ++      AV ++ +M  + +K + F  P VLKAC  L  + TG  +H  V +  FG
Sbjct: 80  RGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFG 139

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++L+  ++KCG ++ A  +FD+  + D+VA +A+++GY QRG  + A  L +E+
Sbjct: 140 SNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEM 199

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                K ++V+WN +I+ ++K G+     +LF     K    DVVSW +++ G V +  N
Sbjct: 200 P----KRDLVSWNVMITAYTKHGEMECARRLFDEAPMK----DVVSWNAMVGGYVLHNLN 251

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH--VRS 389
            EA + F EM   G CP   T+ S+L ACA   +   G+++H   + +  +G L   + +
Sbjct: 252 QEALELFDEMCEVGECPDEVTMLSLLSACADLGDX--GEKVHAKIMELN-KGKLSTLLGN 308

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL- 448
           ALVDMYAKCG I +   +F  + +++ V+WNS+I G A HG+ +E++ LF +M+  K   
Sbjct: 309 ALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCP 368

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++F  VL AC H G V+ G R F +M+ KYKI P   H  C+VD+L RAG L EA++ 
Sbjct: 369 DEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDF 428

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I +M  EP+  VW +LLGACK HG++ELA+ A + L  +  + + + +LL+++YA+ G
Sbjct: 429 IASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHG 486



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 202/492 (41%), Gaps = 96/492 (19%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           + +G ++H ++   G      +   L+ F+ +C ++  A  +FD+  K ++  W AL   
Sbjct: 123 VNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAG 182

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+RG    A  +F EM  +                                       D
Sbjct: 183 YAQRGDLSVARKLFDEMPKR---------------------------------------D 203

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               + +I  Y+K G +E A+++FDE   KD+V+ NAMV GYV   L  EAL L +E+  
Sbjct: 204 LVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCE 263

Query: 274 PRVKPNVVTWNTLISGFSKSGD--QVMVSKLFQLMR---------------------AKG 310
               P+ VT  +L+S  +  GD  + + +K+ +L +                      KG
Sbjct: 264 VGECPDEVTMLSLLSACADLGDXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKG 323

Query: 311 V-------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           V       + D+VSW SVI GL  +   +E+   F+EM     CP   T   +L AC+  
Sbjct: 324 VCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHT 383

Query: 364 ANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNS 421
            N+  G +  +       +E ++     +VDM A+ G + EA      M  E N + W S
Sbjct: 384 GNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRS 443

Query: 422 MIFGCANHGYCD---EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           ++  C  HG  +    A E   +M   +  D++  + V  +  H G  +  + +  +M +
Sbjct: 444 LLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYAS--H-GEWDGAENVRKLMDD 500

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
                 R   +              EAY +      EP+      LLGAC  +G++ELA+
Sbjct: 501 NGVTKTRGSSF-------------VEAYRI------EPNPVNGRTLLGACIVYGDVELAK 541

Query: 539 IAAKHLSELEPE 550
              + L  L  +
Sbjct: 542 RVNEELLRLRRD 553



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 157/376 (41%), Gaps = 66/376 (17%)

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           ++++GT  +IH+L++ + F ++   +  L+                       +    +M
Sbjct: 11  ITNLGTLRQIHALMIVNGFTSNVGFLRKLV-----------------------LTTAMSM 47

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
           V       +   A+ +  +I     +P+   WNT I G S+S D V    L+  M  + V
Sbjct: 48  VGPAATTAVTQYAVQMFAQIP----QPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSV 103

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           +PD  ++  V+      F  +        +   GF       +++L   A   +++   +
Sbjct: 104 KPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVAND 163

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           I   +     +GD+   SAL+  YA+ G +S AR LFD+M +R+ V+WN MI     HG 
Sbjct: 164 IFDDSD----KGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITAYTKHGE 219

Query: 432 CD-------------------------------EAIELFNQMEERKKL-DHLSFTAVLTA 459
            +                               EA+ELF++M E  +  D ++  ++L+A
Sbjct: 220 MECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSA 279

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C  +G  + G+++   + E  K    T     +VD+  + G + +    +  +  + D+ 
Sbjct: 280 CADLG--DXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGV-CVFWLIRDKDMV 336

Query: 520 VWGALLGACKNHGNIE 535
            W +++G    HG+ E
Sbjct: 337 SWNSVIGGLAFHGHAE 352


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/487 (35%), Positives = 269/487 (55%), Gaps = 29/487 (5%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTN 143
           +E Y+R     +G +  A  + +G+     ++   L+  Y     I  AR LFD IP  N
Sbjct: 205 LEGYVR-----AGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRN 259

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
           +  W  +   Y R  + +EA  +F EM  +       +I ++++        G  ++   
Sbjct: 260 VAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRG-------GKLQEAKD 312

Query: 204 LVLKHSFGTDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
           L+ K  F  D+F   ++L+  Y +   ++ A+ +FD +  +D V  N M+SGYV  G+  
Sbjct: 313 LLDKMPF--DSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLD 370

Query: 263 EALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
           EA+ L +++      PN  +V+WNT+I+G++  G       +F+ M  +    + VSW S
Sbjct: 371 EAMVLFQQM------PNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQR----NTVSWNS 420

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           VISG V N    EA   F  M         +T +  L ACA  A +  G++ H      G
Sbjct: 421 VISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSG 480

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
             GD    +AL+  YAKCG I EAR +FD+M   + V+WN++I G A++G+  EAI +F 
Sbjct: 481 YIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFR 540

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +ME+   + D ++F  VL+AC H GL++ G   FN M + Y + P  EHYACMVDLLGR+
Sbjct: 541 EMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRS 600

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           GRL+EA+E+I+ M  +P+  VWGA+LGAC+ H N ELA++AA+ L ELEP   +N +LL+
Sbjct: 601 GRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLLS 660

Query: 560 DLYANAG 566
           ++ A AG
Sbjct: 661 NITAEAG 667



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 136/552 (24%), Positives = 223/552 (40%), Gaps = 114/552 (20%)

Query: 92  RALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           R  +SG++  A+ +   + +R T     +++       I  AR LFDEIP+ N   W A+
Sbjct: 20  RLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAM 79

Query: 151 TGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLS------DIGTGEK--- 200
             A +  G   +A  +F  M  + G    + V  S     G L       D   G+K   
Sbjct: 80  IAACSDHGRVADARDLFDAMPARDGFSWTLMV--SCYARAGELGLARDALDRMPGDKCTA 137

Query: 201 ----IHSLVLKHSFGTDAFVV------------SSLIDMYSKCGSVEKAKKVFDEMVEKD 244
               + S   KH    DA  +            +S++   ++ G + +A K FDEM  +D
Sbjct: 138 CYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARD 197

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +V+ N M+ GYV+ G    A  L    G P   PNVV+W TL++G+ ++G      +LF 
Sbjct: 198 MVSWNLMLEGYVRAGDVDSAAGLFA--GVP--SPNVVSWVTLLNGYCRAGRIGEARELFD 253

Query: 305 LMRAKGVE-------------------------PD--VVSWTSVISGLVHNFCNDEAFDT 337
            +  + V                          PD   +SWT++IS LV      EA D 
Sbjct: 254 RIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDL 313

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA-----LV 392
             +M    F   +A +   L          + K I    ++      L VR A     ++
Sbjct: 314 LDKMPFDSFAAKTALMHGYL----------QSKMIDDARLIF---DGLEVRDAVCWNTMI 360

Query: 393 DMYAKCGFISEARTLFD-------------------------------KMSERNTVTWNS 421
             Y  CG + EA  LF                                KM++RNTV+WNS
Sbjct: 361 SGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNS 420

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G   +G C EA++ F  M  + K+ D  ++   L+AC  +  + +G++  +++    
Sbjct: 421 VISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSG 480

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG--ACKNHGNIELAE 538
            I       A ++    + GR+ EA ++   M   PD+  W AL+   A   HG   ++ 
Sbjct: 481 YIGDSFAGNA-LISAYAKCGRILEARQVFDEMPA-PDIVSWNALIDGYASNGHGTEAISV 538

Query: 539 IAAKHLSELEPE 550
                 +++ P+
Sbjct: 539 FREMEDNDVRPD 550



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 17/181 (9%)

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           +A++   A+ G I++AR LFD++  RNTV+WN+MI  C++HG   +A +LF+ M  R   
Sbjct: 46  NAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMPARD-- 103

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC---MVDLLGRAGRLAEA 505
               F+  L   C+    ELG     + ++    MP  +  AC   M+    + GR  +A
Sbjct: 104 ---GFSWTLMVSCYARAGELG-----LARDALDRMPGDKCTACYNAMISGYAKHGRFDDA 155

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             +++ M   PD+  W ++L     +G +     A K   E+      +  L+ + Y  A
Sbjct: 156 VALLREMPA-PDIISWNSVLVGLTRNGEMVR---AVKFFDEMPARDMVSWNLMLEGYVRA 211

Query: 566 G 566
           G
Sbjct: 212 G 212



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 10/170 (5%)

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455
           A+ G ++ AR LFD M  RNTV++N+M+   A HG   +A  LF+++  R     +S+ A
Sbjct: 22  ARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNT---VSWNA 78

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           ++ AC   G V   + LF+ M  +         +  MV    RAG L  A + +  M  +
Sbjct: 79  MIAACSDHGRVADARDLFDAMPARDGF-----SWTLMVSCYARAGELGLARDALDRMPGD 133

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
                + A++     HG  + A    + +    P+  + N +L  L  N 
Sbjct: 134 KCTACYNAMISGYAKHGRFDDAVALLREMP--APDIISWNSVLVGLTRNG 181


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/510 (34%), Positives = 262/510 (51%), Gaps = 68/510 (13%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL +GK  H+  I +G+     +   L+  Y +C +I  A   F                
Sbjct: 367 ALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------L 411

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y +     ++  +F +M I+G+  N F  PS+LK C  L     GE+IH+ VLK  F  
Sbjct: 412 CYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF 471

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + +V S LIDMY+K G ++ A K+F  + E D+V+  AM++GY Q    TEALNL +E+ 
Sbjct: 472 NVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQ 531

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              +K + + +                                   N L+S +++ G   
Sbjct: 532 DQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVR 591

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
                F  + AK    D VSW S++SG   +   +EA + F +M   G    S T  S +
Sbjct: 592 EAYAAFDQIYAK----DNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAV 647

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            A A+ AN+R GK+IHG     G + +  V +AL+ +YAKCG I +             +
Sbjct: 648 SAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------I 694

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WNSMI G + HG   EA++LF  M++   L +H++F  VL+AC HVGLV+ G   F  M
Sbjct: 695 SWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSM 754

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            E + ++P+ EHYAC+VDLLGR+G L+ A   ++ M  +PD  VW  LL AC  H NI++
Sbjct: 755 SEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDI 814

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            E AA HL ELEP+ +A  +L++++YA +G
Sbjct: 815 GEFAASHLLELEPKDSATYVLVSNMYAVSG 844



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 232/481 (48%), Gaps = 47/481 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK LH  ++  G +  T +   L+T Y+   N+  A  +F  + + +   + +L    A+
Sbjct: 270 GKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQ 329

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           +GY   A+ +F +M++   K +   + S+L AC  +  +  G++ HS  +K    +D  V
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVV 389

Query: 217 VSSLIDMYSKCGSVE----------------KAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
             SL+D+Y KC  ++                K+ ++F +M  + IV         ++   
Sbjct: 390 EGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCT 449

Query: 261 ATEALNLVEEIGTPRVKP----NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV 316
              A +L E+I T  +K     NV   + LI  ++K G      K+F+ ++    E DVV
Sbjct: 450 TLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK----ENDVV 505

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
           SWT++I+G   +    EA + FKEM  QG    +   +S + ACA    + +G++IH  +
Sbjct: 506 SWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQS 565

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
            + G   DL + +ALV +YA+CG + EA   FD++  ++ V+WNS++ G A  GY +EA+
Sbjct: 566 CLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEAL 625

Query: 437 ELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
            +F QM +   +++  +F + ++A  ++  V +G+++  M++ K      TE    ++ L
Sbjct: 626 NIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIR-KTGYDSETEVSNALITL 684

Query: 496 LGRAGRLAEA---------------------YEMIKTMSTEPDLFVWGALLGACKNHGNI 534
             + G + +                      +E +K +   P+   +  +L AC + G +
Sbjct: 685 YAKCGTIDDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLV 744

Query: 535 E 535
           +
Sbjct: 745 D 745



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 221/460 (48%), Gaps = 43/460 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+ I SG    T I   LI  Y +   +  A+ +F+ +   +   W+A+    ++ GY
Sbjct: 186 IHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGY 245

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA+ +F ++              VL AC  +     G+++H LVLK  F ++ +V ++
Sbjct: 246 EEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNA 291

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ +YS+ G++  A+++F  M ++D V+ N+++SG  Q+G    AL L +++     KP+
Sbjct: 292 LVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPD 351

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND------- 332
            VT  +L+S  +  G      +        G+  D+V   S++   V   C+D       
Sbjct: 352 CVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVK--CSDIKTAHEF 409

Query: 333 -----------EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
                      ++F  F +M  +G  P   T  SIL  C +      G++IH   +  G 
Sbjct: 410 FLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGF 469

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           + +++V S L+DMYAK G +  A  +F ++ E + V+W +MI G   H    EA+ LF +
Sbjct: 470 QFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKE 529

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA---CMVDLLG 497
           M+++  K D++ F + ++AC  +  ++ G+++      +  +   ++  +    +V L  
Sbjct: 530 MQDQGIKSDNIGFASAISACAGIQALDQGRQI----HAQSCLSGYSDDLSIGNALVSLYA 585

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           R G++ EAY     +  + D   W +L+      G  E A
Sbjct: 586 RCGKVREAYAAFDQIYAK-DNVSWNSLVSGFAQSGYFEEA 624



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 199/437 (45%), Gaps = 44/437 (10%)

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
           KLI FY    +++ A  +FDE+P  ++  W  +   +           +F  M  + ++ 
Sbjct: 102 KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEF 161

Query: 178 NIFVIPSVLKAC-GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
           +  +   VL+ C G+       E+IH+  +   F +  F+ + LID+Y K G +  AKKV
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI---GTPRVK---------------- 277
           F+ +  +D V+  AM+SG  Q G   EA+ L  +I      +V+                
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQG 281

Query: 278 --PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                   N L++ +S+SG+     ++F  M  +    D VS+ S+ISGL      + A 
Sbjct: 282 FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQR----DRVSYNSLISGLAQQGYINRAL 337

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             FK+M      P   T++S+L ACAS   +  GK+ H  AI  G+  D+ V  +L+D+Y
Sbjct: 338 ALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLY 397

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFT 454
            KC  I  A   F             + +G  ++   +++ ++F QM+ E    +  ++ 
Sbjct: 398 VKCSDIKTAHEFF-------------LCYGQLDN--LNKSFQIFTQMQIEGIVPNQFTYP 442

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           ++L  C  +G  +LG+++   +  K          + ++D+  + G+L  A ++ + +  
Sbjct: 443 SILKTCTTLGATDLGEQIHTQVL-KTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK- 500

Query: 515 EPDLFVWGALLGACKNH 531
           E D+  W A++     H
Sbjct: 501 ENDVVSWTAMIAGYTQH 517



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 19/281 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL  G+ +HAQ  +SG +    I   L++ Y  C  +  A   FD+I   +   W +L 
Sbjct: 553 QALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLV 612

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +A+ GY +EA+ +F +M+  GL+ N F   S + A  +++++  G++IH ++ K  + 
Sbjct: 613 SGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYD 672

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++LI +Y+KCG++             D ++ N+M++GY Q G   EAL L E++
Sbjct: 673 SETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKLFEDM 719

Query: 272 GTPRVKPNVVTWNTLISGFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
               V PN VT+  ++S  S  G  D+  +S    +  A  + P    +  V+  L  + 
Sbjct: 720 KQLDVLPNHVTFVGVLSACSHVGLVDE-GISYFRSMSEAHNLVPKPEHYACVVDLLGRSG 778

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
               A    +EM  Q   P +    ++L AC    N+  G+
Sbjct: 779 LLSRAKRFVEEMPIQ---PDAMVWRTLLSACNVHKNIDIGE 816



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 176/409 (43%), Gaps = 86/409 (21%)

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY------------------------ 255
           LID Y   G +  A  VFDEM  + +   N + + +                        
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 256 ------VQRGLATEALN--LVEEIG----TPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
                 V RG +  A++   VE+I     T   + +    N LI  + K+G      K+F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           + ++A+    D VSW ++ISGL  N   +EA   F ++              +L AC   
Sbjct: 223 ENLKAR----DSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKV 264

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
                GK++HG  +  G   + +V +ALV +Y++ G +S A  +F  MS+R+ V++NS+I
Sbjct: 265 EFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLI 324

Query: 424 FGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQR----------- 471
            G A  GY + A+ LF +M  + +K D ++  ++L+AC  VG +  G++           
Sbjct: 325 SGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMT 384

Query: 472 --------LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFV 520
                   L ++  +   I    E + C     G+   L +++++   M  E   P+ F 
Sbjct: 385 SDIVVEGSLLDLYVKCSDIKTAHEFFLCY----GQLDNLNKSFQIFTQMQIEGIVPNQFT 440

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAAN---NMLLTDLYANAG 566
           + ++L  C   G  +L E    H   L+     N   + +L D+YA  G
Sbjct: 441 YPSILKTCTTLGATDLGE--QIHTQVLKTGFQFNVYVSSVLIDMYAKHG 487


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 179/522 (34%), Positives = 271/522 (51%), Gaps = 32/522 (6%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L+P  +S  +++ +     + G  +HA +   G      + T LI  Y+ C     AR +
Sbjct: 143 LNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQV 202

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FD I   ++  W  +   Y      +E++ +F  M I G K N F   SVLKAC  L   
Sbjct: 203 FDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVF 262

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G+ +H    K S+  + FV   LID+Y K G V+ A +VF+EM + D++  + M++ Y
Sbjct: 263 NVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARY 322

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQ-------------V 297
            Q   + EA+ +   +    V PN  T  +L+   +     + G+Q             V
Sbjct: 323 AQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNV 382

Query: 298 MVSKLFQLMRAK-----------GVEPDV--VSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
            VS     M AK              P+   VSW +VI G V     ++A   FK+ML  
Sbjct: 383 FVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLEC 442

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
               T  T SS+L ACA  A +  G +IH  ++    + +  V +AL+DMYAKCG I +A
Sbjct: 443 QVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDA 502

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV 463
           R +FD + E + V+WN+MI G + HG   EA++ F  M E + K D ++F  +L+AC + 
Sbjct: 503 RLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNA 562

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
           GL++ GQ  F  M E+Y I P  EHY CMV LLGR+G L +A +++  +  EP + VW A
Sbjct: 563 GLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRA 622

Query: 524 LLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           LL AC  H ++EL  I+A+ + E+EPE  A ++LL+++YANA
Sbjct: 623 LLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANA 664



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 240/505 (47%), Gaps = 54/505 (10%)

Query: 72  RSFHLSPA----AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
           R+ H SP      Y   ++  IR+    +GK LH ++I  G          L+ FY +  
Sbjct: 34  RTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYD 93

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           ++  A  LFDE+P  N   ++ L   Y++     EA+ +F  +  +G + N FV  +VLK
Sbjct: 94  SLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLK 153

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
                     G  +H+ V K  F +DAFV ++LID YS CG  E A++VFD +  KD+V+
Sbjct: 154 LLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVS 213

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT---------------------- 285
              MV+ YV+     E+L L   +     KPN  T+ +                      
Sbjct: 214 WTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAF 273

Query: 286 -------------LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                        LI  + KSGD     ++F+ M     + DV+ W+ +I+    +  ++
Sbjct: 274 KTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP----KDDVIPWSFMIARYAQSEQSE 329

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA + F  M      P   T++S+L ACAS  +++ G +IH   + +G++ ++ V +AL+
Sbjct: 330 EAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALM 389

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHL 451
           DMYAKCG +  +  LF +      V+WN++I G    G  ++A+ LF  M E + +   +
Sbjct: 390 DMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEV 449

Query: 452 SFTAVLTACCHVGLVELGQRLFNM----MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
           ++++VL AC  +  +E G ++ ++    + +K  ++        ++D+  + G + +A  
Sbjct: 450 TYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNA-----LIDMYAKCGNIKDA-R 503

Query: 508 MIKTMSTEPDLFVWGALLGACKNHG 532
           ++  M  E D   W A++     HG
Sbjct: 504 LVFDMLREHDQVSWNAMISGYSVHG 528


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 176/505 (34%), Positives = 263/505 (52%), Gaps = 73/505 (14%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           +A  +F+ I + N   W  +   +A       ++T++  M   GL  N +  P +LK+C 
Sbjct: 16  YATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCA 75

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMY-------------------------- 224
                  G++IH  VLK  F  D +V +SLI MY                          
Sbjct: 76  KSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTA 135

Query: 225 -----SKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
                +  G +  A+K+FDE+  KD+V+ NAM+SGY + G   EAL L EE+    V+P+
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPD 195

Query: 280 ----------------------VVTW-------------NTLISGFSKSGDQVMVSKLFQ 304
                                 V +W             N LI  +SK G+      LFQ
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +  K    DV+SW ++I G  H     EA   F+EML  G  P   T+ S+LPACA   
Sbjct: 256 GLSYK----DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLG 311

Query: 365 NMRRGKEIHGC--AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            +  G+ IH      + GV     +R++L+DMYAKCG I  A  +F+ M  ++  +WN+M
Sbjct: 312 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAM 371

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           IFG A HG  D + +LF++M +   + D ++F  +L+AC H G+++LG+ +F  M + YK
Sbjct: 372 IFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYK 431

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + P+ EHY CM+DLLG +G   EA EMI TM  EPD  +W +LL ACK HGN+ELAE  A
Sbjct: 432 MTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFA 491

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           ++L ++EPE+ ++ +LL+++YA+AG
Sbjct: 492 QNLIKIEPENPSSYILLSNIYASAG 516



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 189/441 (42%), Gaps = 57/441 (12%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS +      I+G          ++   F L    ++  I +Y+++  L+    
Sbjct: 70  LLKSCAKSKTFTEGQQIHG---------QVLKLGFDLDLYVHTSLISMYVQNWRLEDA-- 118

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
              ++      R     T LIT Y    +I  A+ LFDEIP  ++  W A+   YA  G 
Sbjct: 119 --YKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGC 176

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++EA+ +F EM    ++ +     +VL AC H   I  G ++HS V  H F ++  +V++
Sbjct: 177 YKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNA 236

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID+YSKCG VE A  +F  +  KD+++ N ++ GY    L  EAL L +E+      PN
Sbjct: 237 LIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 296

Query: 280 VVT------------------W-------------------NTLISGFSKSGDQVMVSKL 302
            VT                  W                    +LI  ++K GD     ++
Sbjct: 297 DVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 356

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  M  K +     SW ++I G   +   D +FD F  M   G  P   T   +L AC+ 
Sbjct: 357 FNSMLHKSLS----SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSH 412

Query: 363 AANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
           +  +  G+ I         +   L     ++D+    G   EA  + + M  E + V W 
Sbjct: 413 SGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWC 472

Query: 421 SMIFGCANHGYCDEAIELFNQ 441
           S++  C  HG  + A E F Q
Sbjct: 473 SLLKACKMHGNVELA-ESFAQ 492


>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
          Length = 523

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 262/453 (57%), Gaps = 31/453 (6%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM----HIQGLKQNIFVIPS 184
           I HA ++FD+IP+ +   +  L    A     ++AV+++  M       G++ +    P 
Sbjct: 28  IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL+AC  +    TG ++H+ V+K    +DAFV ++LI M++ CG++  A  +FD    +D
Sbjct: 88  VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 147

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
            VA +AM++G  +RG    A +L +E        ++V+WN +I+ ++K GD  +  +LF 
Sbjct: 148 AVAWSAMITGCARRGDIGAARDLFDECPVK----DLVSWNVMITAYAKRGDMALARELFD 203

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +     E DVVSW  +ISG V    +  A + F++M   G  P   T+ S+L ACA + 
Sbjct: 204 QV----PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSG 259

Query: 365 NMRRGKEIH----------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           ++  G+ +H          G  +V+G        +AL+DMYAKCG +  A  +F  M ++
Sbjct: 260 DLDVGQRLHSSLSDMFSRNGFPVVLG--------NALIDMYAKCGSMKSAHEVFWSMRDK 311

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           +  TWNS++ G A HG+  E+I++F +M + K + D ++F AVL AC H G+V+ G+  F
Sbjct: 312 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 371

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           N+MQ KY++ P  +HY CMVD+LGRAG L EA+E I TM  EP+  +W  LL AC+ HG 
Sbjct: 372 NLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGE 431

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           IELA+ A + L +   + + + +LL+++YA+ G
Sbjct: 432 IELAKHANRQLLKARNDESGDYVLLSNIYASVG 464



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 8/246 (3%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +IT Y +  ++  AR LFD++P+ ++  W  +   Y R G H  A+ +F +M   G K +
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD 244

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV---SSLIDMYSKCGSVEKAKK 235
           I  + S+L AC    D+  G+++HS  L   F  + F V   ++LIDMY+KCGS++ A +
Sbjct: 245 IVTMLSLLSACADSGDLDVGQRLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHE 303

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           VF  M +KD+   N++V G    G   E++++ E++   +V+P+ +T+  ++   S  G 
Sbjct: 304 VFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGM 363

Query: 296 QVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                + F LM+ K  VEP++  +  ++  L       EAF+    M  +   P S    
Sbjct: 364 VDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCE---PNSVIWR 420

Query: 355 SILPAC 360
           ++L AC
Sbjct: 421 TLLSAC 426



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 152/373 (40%), Gaps = 74/373 (19%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A  +G  +HA ++ +G      +   LI  +  C N+  A  LFD   + +   W A+  
Sbjct: 97  AGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMIT 156

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             ARRG    A  +F E  ++                                       
Sbjct: 157 GCARRGDIGAARDLFDECPVK--------------------------------------- 177

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    + +I  Y+K G +  A+++FD++ E+D+V+ N M+SGYV+ G    AL L E++ 
Sbjct: 178 DLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQ 237

Query: 273 TPRVKPNVVTWNTLISGFSKSGD----QVMVSKLFQLMRAKGV----------------- 311
               KP++VT  +L+S  + SGD    Q + S L  +    G                  
Sbjct: 238 RMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGS 297

Query: 312 ------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                       + DV +W S++ GL  +    E+ D F++ML     P   T  ++L A
Sbjct: 298 MKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIA 357

Query: 360 CASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
           C+    + +G+E          VE ++     +VDM  + G + EA    D M  E N+V
Sbjct: 358 CSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSV 417

Query: 418 TWNSMIFGCANHG 430
            W +++  C  HG
Sbjct: 418 IWRTLLSACRVHG 430


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/507 (31%), Positives = 273/507 (53%), Gaps = 32/507 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + LQ G+++H  +   GL     +   L+  Y +C+ I  AR LFD++ + ++  W  + 
Sbjct: 44  KNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMI 103

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G YA  G   E++ +F +M  +G+  +   + +V+ AC  L  +     I   + +  F 
Sbjct: 104 GGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQ 163

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D  + +++IDMY+KCG VE A+++FD M EK++++ +AM++ Y   G   +AL+L   +
Sbjct: 164 LDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMM 223

Query: 272 GTPRVKPNVVTWNTLISG-------------------FSKSGDQVMVSKLFQL------- 305
            +  + P+ +T  +L+                     F    D  + + L  +       
Sbjct: 224 LSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREI 283

Query: 306 -----MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                +  K  E D+V+WT +I G       +E+   F +M  +G  P    + +++ AC
Sbjct: 284 EDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 343

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           A    M + + I         + D+ + +A++DM+AKCG +  AR +FD+M E+N ++W+
Sbjct: 344 AKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWS 403

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI     HG   +A++LF  M     L + ++  ++L AC H GLVE G R F++M E 
Sbjct: 404 AMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWED 463

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y +    +HY C+VDLLGRAGRL EA ++I++M+ E D  +WGA LGAC+ H ++ LAE 
Sbjct: 464 YSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEK 523

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA  L EL+P++  + +LL+++YANAG
Sbjct: 524 AATSLLELQPQNPGHYILLSNIYANAG 550



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/416 (31%), Positives = 209/416 (50%), Gaps = 34/416 (8%)

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           + G +A+ G +      F E+   G + + + +P V++AC  L ++  G  IH +V K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D FV ++L+DMY KC  +E A+ +FD+M E+D+V    M+ GY + G A E+L L E
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSG--------DQVMVSKLFQLMRAKGV---------- 311
           ++    V P+ V   T++   +K G        D  +  K FQL    G           
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 312 -------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
                        E +V+SW+++I+   ++    +A D F+ MLS G  P   T++S+L 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC+   N++ G+ IH      G++ D  V +ALVDMY KC  I +AR LFDKM ER+ VT
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVT 300

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W  MI G A  G  +E++ LF++M E   + D ++   V+ AC  +G +   + + + +Q
Sbjct: 301 WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 360

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            K K          M+D+  + G +  A E+   M  E ++  W A++ A   HG 
Sbjct: 361 RK-KFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 414



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 154/325 (47%), Gaps = 5/325 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + LQ G+++H  +   GL     +   L+  Y +C+ I  AR LFD++P+ ++  W  + 
Sbjct: 246 KNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMI 305

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G YA  G   E++ +F +M  +G+  +   + +V+ AC  L  +     I   + +  F 
Sbjct: 306 GGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQ 365

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D  + +++IDM++KCG VE A+++FD M EK++++ +AM++ Y   G   +AL+L   +
Sbjct: 366 LDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMM 425

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
               + PN +T  +L+   S +G      + F LM     V  DV  +T V+  L     
Sbjct: 426 LRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGR 485

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            DEA    + M  +          + L AC +  ++   ++     + +  +   H    
Sbjct: 486 LDEALKLIESMTVE---KDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHY-IL 541

Query: 391 LVDMYAKCGFISEARTLFDKMSERN 415
           L ++YA  G   +     D MS+R 
Sbjct: 542 LSNIYANAGRWEDVAKTRDLMSQRR 566


>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
          Length = 732

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/464 (33%), Positives = 259/464 (55%), Gaps = 2/464 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  +V+GL     + T ++ FY +   I  A M+FD + + ++  W  L  
Sbjct: 269 GIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVVTWNLLIS 328

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+ +   M ++ LK +   + +++ A     D   G+++ S  ++HS  +
Sbjct: 329 GYVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLES 388

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+KCGS+  AKKVFD  V+KD++  N ++  Y + GL+ EAL L  E+ 
Sbjct: 389 DIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYAESGLSGEALRLFYEMQ 448

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G      ++F  M++ G+ P++VSWT++++GLV N C++
Sbjct: 449 LESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIIPNLVSWTTMMNGLVQNGCSE 508

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSAL 391
           EA    ++M   G  P   +I+  L ACA+ A++  G+ IHG  I        + + ++L
Sbjct: 509 EAILFLRKMQESGLRPNVFSITVALSACANLASLHYGRSIHGYIIRNQRHCSSVSIETSL 568

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG I++A  +F          +N+MI G A +G   EAI L+  +E+   K D 
Sbjct: 569 VDMYAKCGDINKAERVFRSKLYSELPLYNAMISGFAVYGNVKEAIGLYRSLEDMGIKPDS 628

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT++L+AC H G +     +F  M  K+ + P  EHY  MVDLL  AG   +A  +++
Sbjct: 629 ITFTSLLSACNHAGDINQAFEIFTDMVSKHGLKPCLEHYGLMVDLLASAGETDKALRLME 688

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554
            M  +PD  +  +L   CK     EL E  ++ L E EP+++ N
Sbjct: 689 EMPYKPDARMVQSLFATCKKQHKDELVEYLSRQLLESEPDNSGN 732



 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/542 (29%), Positives = 265/542 (48%), Gaps = 56/542 (10%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R   + P  Y E ++  +  R L +GK +HA+++  G   AR   I TKL+ FY +C  +
Sbjct: 44  RKIRIGPEIYGEILQGCVYKRNLCTGKQIHARILKKGDFYARNEYIETKLVIFYAKCDAL 103

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A +LF ++   N+  W A+ G   R G  + A+  F EM   G+  + FV+P+V KAC
Sbjct: 104 EIAELLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKAC 163

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V+K  F    FV SSL DMY KCG +++A+KVFDE+ E+++VA N
Sbjct: 164 GALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEIPERNVVAWN 223

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L  ++    V+P  VT +T +S  +  G               
Sbjct: 224 ALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVN 283

Query: 295 ----DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + +             +++  + VE DVV+W  +ISG V     ++A    
Sbjct: 284 GLELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMC 343

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++ A A   + + GKE+    I   +E D+ + S  VDMYAKC
Sbjct: 344 QSMRLENLKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLESDIVLASTAVDMYAKC 403

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD   +++ + WN+++   A  G   EA+ LF +M+ E    + +++  ++
Sbjct: 404 GSIVDAKKVFDSTVQKDLILWNTLLGAYAESGLSGEALRLFYEMQLESVPPNVITWNLII 463

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V   + +F  MQ    I+P    +  M++ L + G   EA   ++ M     
Sbjct: 464 LSLLRNGQVNEAKEMFLQMQSS-GIIPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGL 522

Query: 515 EPDLFVWGALLGACKN----------HGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
            P++F     L AC N          HG I   +   +H S +  E++     L D+YA 
Sbjct: 523 RPNVFSITVALSACANLASLHYGRSIHGYIIRNQ---RHCSSVSIETS-----LVDMYAK 574

Query: 565 AG 566
            G
Sbjct: 575 CG 576



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/470 (25%), Positives = 226/470 (48%), Gaps = 51/470 (10%)

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
           HH     +    +  HR  +L     + G  +EA+++  EM  + ++    +   +L+ C
Sbjct: 5   HHDDQARNRSSTSYFHRVSSL----CKSGEIREALSLVTEMDFRKIRIGPEIYGEILQGC 60

Query: 190 GHLSDIGTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
            +  ++ TG++IH+ +LK    +  + ++ + L+  Y+KC ++E A+ +F ++  +++ +
Sbjct: 61  VYKRNLCTGKQIHARILKKGDFYARNEYIETKLVIFYAKCDALEIAELLFSKLRVRNVFS 120

Query: 248 MNAMVSGYVQRGLATEAL----NLVEEIGTPR--VKPNV------VTWNTLISGFS---- 291
             A++    + GL   AL     ++E    P   V PNV      + W+    G      
Sbjct: 121 WAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVV 180

Query: 292 KSG--DQVMVSKLFQLMRAK-GV------------EPDVVSWTSVISGLVHNFCNDEAFD 336
           K+G  D V V+     M  K GV            E +VV+W +++ G V N  N+EA  
Sbjct: 181 KAGFHDCVFVASSLADMYGKCGVLDEARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIR 240

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M  +G  PT  T+S+ L A A+   +  GK+ H  A+V G+E D  + +++++ Y 
Sbjct: 241 LFSDMRKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYC 300

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTA 455
           K G I  A  +FD+M E++ VTWN +I G    G  ++AI +   M  E  K D ++ + 
Sbjct: 301 KVGLIECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKFDCVTLST 360

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEAYEMIKT 511
           +++A       +LG+ +     + Y I    E      +  VD+  + G + +A ++  +
Sbjct: 361 LMSAAARTQDSKLGKEV-----QSYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDS 415

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
            + + DL +W  LLGA    G   L+  A +   E++ ES   N++  +L
Sbjct: 416 -TVQKDLILWNTLLGAYAESG---LSGEALRLFYEMQLESVPPNVITWNL 461


>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
          Length = 749

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/483 (36%), Positives = 262/483 (54%), Gaps = 33/483 (6%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+ FY   + +  A+ LFD++P      W  L   +AR      AV  F  M   G+ 
Sbjct: 98  TALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVS 157

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
                + SVL AC  L D   G  +HS+ L H F     V ++L+DMY+KC  +  A++V
Sbjct: 158 PTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQV 217

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----- 291
           F EM EK++    A+V+G+V      +A+ LV E+    V PN++T+++L+S F+     
Sbjct: 218 FREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDI 277

Query: 292 -----------KSG---DQVMVSKLFQLMRAKGVEPDV------------VSWTSVISGL 325
                      K G   DQ ++S L  +    G+  D             VS+ SVISGL
Sbjct: 278 DHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISGL 337

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  EAF  F EM   G      T +S+L A  S++++  G+++H   + +G +  +
Sbjct: 338 SCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVV 397

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
            V+++L+ MYA+ G I E+  +F  M   N V+WNS++ GCA HG+  E +E+F QM   
Sbjct: 398 DVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRL 457

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK-YKIMPRTEHYACMVDLLGRAGRLA 503
             + DH++F +VLTAC HVGLV+ G   FN+M++K Y +  RTEHYACMVDLLGRAG L 
Sbjct: 458 HVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLN 517

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA  +I  M  +P   V+ ALL AC+ HGN+E+    +K L EL P  ++ ++ L++ +A
Sbjct: 518 EAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFA 577

Query: 564 NAG 566
             G
Sbjct: 578 GDG 580



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 170/395 (43%), Gaps = 34/395 (8%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R     +G  LH+  ++ G      + T L+  Y +C ++  A+ +F E+ + N+  + 
Sbjct: 171 VRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFT 230

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           AL   +       +A+ +  EM   G+  N+    S+L +     DI  G+++H  VLK 
Sbjct: 231 ALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKK 290

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               D FV+S+L+ MYSKCG +E   KV   +  +D V+ N+++SG    G   EA    
Sbjct: 291 GLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHF 350

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKS-----GDQV---------------------MVSKL 302
            E+       +V T+ +++     S     G QV                     M ++ 
Sbjct: 351 LEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARH 410

Query: 303 FQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             +  + GV      P++VSW S++SG   +    E  + F++M      P   T  S+L
Sbjct: 411 GAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVL 470

Query: 358 PACASAANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
            AC+    + +G E        G  V       + +VD+  + G+++EA  L + M  + 
Sbjct: 471 TACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKP 530

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
               + +++  C  HG  +  I +  ++ E    D
Sbjct: 531 GASVYRALLSACQIHGNLEIVIRVSKRLIELNPHD 565



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 115/230 (50%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           YS  +  +     +  GK +H  ++  GL     + + L+T Y++C  +     +   + 
Sbjct: 264 YSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVS 323

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +   + ++    +  G  +EA   F EM   G   ++F   SVLKA G  S +  G +
Sbjct: 324 CQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQ 383

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H+L+LK  + +   V +SLI MY++ G++ ++  VF  M   ++V+ N+++SG  Q G 
Sbjct: 384 VHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGH 443

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
             E + + E++    V+P+ +T+ ++++  S  G      + F LM+ KG
Sbjct: 444 GKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 493



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +L   +AL+  Y +   + EA+ LFD+M  R  VTWN++I G A       A+  F +M 
Sbjct: 93  NLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMA 152

Query: 444 ERK-KLDHLSFTAVLTAC 460
                    S ++VL AC
Sbjct: 153 RAGVSPTASSVSSVLVAC 170


>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 823

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 262/453 (57%), Gaps = 31/453 (6%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM----HIQGLKQNIFVIPS 184
           I HA ++FD+IP+ +   +  L    A     ++AV+++  M       G++ +    P 
Sbjct: 28  IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL+AC  +    TG ++H+ V+K    +DAFV ++LI M++ CG++  A  +FD    +D
Sbjct: 88  VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 147

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
            VA +AM++G  +RG    A +L +E        ++V+WN +I+ ++K GD  +  +LF 
Sbjct: 148 AVAWSAMITGCARRGDIGAARDLFDECPVK----DLVSWNVMITAYAKRGDMALARELFD 203

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +     E DVVSW  +ISG V    +  A + F++M   G  P   T+ S+L ACA + 
Sbjct: 204 QV----PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSG 259

Query: 365 NMRRGKEIH----------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           ++  G+ +H          G  +V+G        +AL+DMYAKCG +  A  +F  M ++
Sbjct: 260 DLDVGQRLHSSLSDMFSRNGFPVVLG--------NALIDMYAKCGSMKSAHEVFWSMRDK 311

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           +  TWNS++ G A HG+  E+I++F +M + K + D ++F AVL AC H G+V+ G+  F
Sbjct: 312 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 371

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           N+MQ KY++ P  +HY CMVD+LGRAG L EA+E I TM  EP+  +W  LL AC+ HG 
Sbjct: 372 NLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGE 431

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           IELA+ A + L +   + + + +LL+++YA+ G
Sbjct: 432 IELAKHANRQLLKARNDESGDYVLLSNIYASVG 464



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 8/246 (3%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +IT Y +  ++  AR LFD++P+ ++  W  +   Y R G H  A+ +F +M   G K +
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD 244

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV---SSLIDMYSKCGSVEKAKK 235
           I  + S+L AC    D+  G+++HS  L   F  + F V   ++LIDMY+KCGS++ A +
Sbjct: 245 IVTMLSLLSACADSGDLDVGQRLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHE 303

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           VF  M +KD+   N++V G    G   E++++ E++   +V+P+ +T+  ++   S  G 
Sbjct: 304 VFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGM 363

Query: 296 QVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                + F LM+ K  VEP++  +  ++  L       EAF+    M  +   P S    
Sbjct: 364 VDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCE---PNSVIWR 420

Query: 355 SILPAC 360
           ++L AC
Sbjct: 421 TLLSAC 426



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 152/373 (40%), Gaps = 74/373 (19%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A  +G  +HA ++ +G      +   LI  +  C N+  A  LFD   + +   W A+  
Sbjct: 97  AGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMIT 156

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             ARRG    A  +F E  ++                                       
Sbjct: 157 GCARRGDIGAARDLFDECPVK--------------------------------------- 177

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    + +I  Y+K G +  A+++FD++ E+D+V+ N M+SGYV+ G    AL L E++ 
Sbjct: 178 DLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQ 237

Query: 273 TPRVKPNVVTWNTLISGFSKSGD----QVMVSKLFQLMRAKGV----------------- 311
               KP++VT  +L+S  + SGD    Q + S L  +    G                  
Sbjct: 238 RMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGS 297

Query: 312 ------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                       + DV +W S++ GL  +    E+ D F++ML     P   T  ++L A
Sbjct: 298 MKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIA 357

Query: 360 CASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
           C+    + +G+E          VE ++     +VDM  + G + EA    D M  E N+V
Sbjct: 358 CSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSV 417

Query: 418 TWNSMIFGCANHG 430
            W +++  C  HG
Sbjct: 418 IWRTLLSACRVHG 430


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 269/479 (56%), Gaps = 13/479 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIAL 150
           +L+  K +HAQ+  +GL     +  KL+     T    +H+A  LF   P  +      L
Sbjct: 14  SLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTL 73

Query: 151 TGAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
             + +       ++  F ++  Q  L  + F     LKA  +   +  G ++HS   +H 
Sbjct: 74  IRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHG 133

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F    FV ++LI MY++CG    A++VFDEM E ++V  NA+++   + G    A ++  
Sbjct: 134 FDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDV-- 191

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
             G   V+ N+ +WN +++G++K+G+  +  ++F  M  +    D VSW+++I G  HN 
Sbjct: 192 -FGCMPVR-NLTSWNGMLAGYAKAGELGLARRVFYEMPLR----DEVSWSTMIVGFAHNG 245

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           C DEAF  F+E+L +       +++ +L ACA A     GK +HG     G      V +
Sbjct: 246 CFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNN 305

Query: 390 ALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
           AL+D Y+KCG ++ AR +F  M   R+ V+W S+I G A HG  +EAI+LF++MEE   +
Sbjct: 306 ALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVR 365

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            D ++F ++L AC H GLVE G  LF+ M+  Y I P  EHY CMVDL GRA RL +AYE
Sbjct: 366 PDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYE 425

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            I  M   P+  +W  LLGAC  HGNIE+AE+    L+E++P+++ +++LL+++YA AG
Sbjct: 426 FICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAG 484



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 165/422 (39%), Gaps = 72/422 (17%)

Query: 70  ISRSFHLSPAAYSER--IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
           + R   LSP +++    ++     R L+ G  LH+Q    G      + T LI+ Y EC 
Sbjct: 93  LRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECG 152

Query: 128 NIHHARMLFDE-------------------------------IPKTNIHRWIALTGAYAR 156
           +   AR +FDE                               +P  N+  W  +   YA+
Sbjct: 153 DSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAK 212

Query: 157 RGYHQEAVTVFHEMHIQG-------------------------------LKQNIFVIPSV 185
            G    A  VF+EM ++                                ++ N   +  V
Sbjct: 213 AGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGV 272

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKD 244
           L AC        G+ +H  V K  F     V ++LID YSKCG+V  A+ VF  M V + 
Sbjct: 273 LSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARS 332

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           IV+  ++++G    G   EA+ L  E+    V+P+ +T+ +L+   S SG       LF 
Sbjct: 333 IVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFS 392

Query: 305 LMRA-KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
            M+   G+EP +  +  ++          +A++   EM      P +    ++L AC+  
Sbjct: 393 KMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEM---PVSPNAIIWRTLLGACSIH 449

Query: 364 ANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
            N+   + +      M  +  GD  + S +  +  K   +S  R    + S + T  W S
Sbjct: 450 GNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGW-S 508

Query: 422 MI 423
           MI
Sbjct: 509 MI 510


>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 749

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 175/483 (36%), Positives = 262/483 (54%), Gaps = 33/483 (6%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+ FY   + +  A+ LFD++P      W  L   +AR      AV  F  M   G+ 
Sbjct: 98  TALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVS 157

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
                + SVL AC  L D   G  +HS+ L H F     V ++L+DMY+KC  +  A++V
Sbjct: 158 PTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQV 217

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----- 291
           F EM EK++    A+V+G+V      +A+ LV E+    V PN++T+++L+S F+     
Sbjct: 218 FREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDI 277

Query: 292 -----------KSG---DQVMVSKLFQLMRAKGVE------------PDVVSWTSVISGL 325
                      K G   DQ ++S L  +    G+              D VS+ SVISGL
Sbjct: 278 DHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGL 337

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  EAF  F EM   G      T +S+L A  S++++  G+++H   + +G +  +
Sbjct: 338 SCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVV 397

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
            V+++L+ MYA+ G I E+  +F  M   N V+WNS++ GCA HG+  E +E+F QM   
Sbjct: 398 DVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRL 457

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK-YKIMPRTEHYACMVDLLGRAGRLA 503
             + DH++F +VLTAC HVGLV+ G   FN+M++K Y +  RTEHYACMVDLLGRAG L 
Sbjct: 458 HVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLN 517

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA  +I  M  +P   V+ ALL AC+ HGN+E+    +K L EL P  ++ ++ L++ +A
Sbjct: 518 EAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFA 577

Query: 564 NAG 566
             G
Sbjct: 578 GDG 580



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 170/395 (43%), Gaps = 34/395 (8%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R     +G  LH+  ++ G      + T L+  Y +C ++  A+ +F E+ + N+  + 
Sbjct: 171 VRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFT 230

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           AL   +       +A+ +  EM   G+  N+    S+L +     DI  G+++H  VLK 
Sbjct: 231 ALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKK 290

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               D FV+S+L+ MYSKCG +E   KV   +  +D V+ N+++SG    G   EA    
Sbjct: 291 GLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHF 350

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKS-----GDQV---------------------MVSKL 302
            E+       +V T+ +++     S     G QV                     M ++ 
Sbjct: 351 LEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARH 410

Query: 303 FQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             +  + GV      P++VSW S++SG   +    E  + F++M      P   T  S+L
Sbjct: 411 GAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVL 470

Query: 358 PACASAANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
            AC+    + +G E        G  V       + +VD+  + G+++EA  L + M  + 
Sbjct: 471 TACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKP 530

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
               + +++  C  HG  +  I +  ++ E    D
Sbjct: 531 GASVYRALLSACQIHGNLEIVIRVSKRLIELNPHD 565



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 120/236 (50%), Gaps = 12/236 (5%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLF- 136
           YS  +  +     +  GK +H  ++  GL     + + L+T Y++C   +N    +M   
Sbjct: 264 YSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVS 323

Query: 137 --DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
             D++   ++   ++  G    RG  +EA   F EM   G   ++F   SVLKA G  S 
Sbjct: 324 CQDQVSFNSVISGLSCLG----RG--KEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSS 377

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G ++H+L+LK  + +   V +SLI MY++ G++ ++  VF  M   ++V+ N+++SG
Sbjct: 378 LLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSG 437

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
             Q G   E + + E++    V+P+ +T+ ++++  S  G      + F LM+ KG
Sbjct: 438 CAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 493



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +L   +AL+  Y +   + EA+ LFD+M  R  VTWN++I G A       A+  F +M 
Sbjct: 93  NLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMA 152

Query: 444 ERK-KLDHLSFTAVLTAC 460
                    S ++VL AC
Sbjct: 153 RAGVSPTASSVSSVLVAC 170


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 177/586 (30%), Positives = 294/586 (50%), Gaps = 45/586 (7%)

Query: 19  LSMNDFYSIRRIYFALLSGTQLVLSCS-KSASDAGKPLINGIFIEAHYKMPIISRSFHLS 77
           +S +D    R+++  +   T +V +C  +  +    P+       A  +  +   ++ ++
Sbjct: 64  VSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMA 123

Query: 78  PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
             A S       + RA  +G  +HA +   G A    + + LI FY   +++  AR +F+
Sbjct: 124 AVAQSSAAFASWKGRA--TGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFE 181

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
           E+ + ++  W  +  A+A+ G     +    EM  +G K N   I S+L ACG +  +  
Sbjct: 182 EMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDK 241

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G  +++ V ++    D  + ++LI MY KCG +  A K F  M  ++  + N ++ G+VQ
Sbjct: 242 GLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQ 301

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTW---------------------------------- 283
            G   EAL + EE+ +  V P+V+T                                   
Sbjct: 302 NGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIIL 361

Query: 284 -NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
            N+LI+ ++K GD      +F+ M  +    D+VSWT+++ G V       AF+ F +M 
Sbjct: 362 QNSLINMYAKCGDMAAAEIIFENMARR----DIVSWTAMVCGYVKGLQFRTAFNLFDDMK 417

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
            +    +   + S+L AC+    + +G+EIH       V  D+ + SALVDMYAKCG I 
Sbjct: 418 VRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCID 477

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLDHLSFTAVLTAC 460
            A  +F +M  + T+ WN+MI G A+ G   EA+ LF Q+ + +  K D ++   VL AC
Sbjct: 478 AAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCAC 537

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            HVG+V+ G   FN+M     I+P  EHY C+VDLLGRAG L EAY  I+ M  +P+  +
Sbjct: 538 THVGMVDEGLHYFNLML-TLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVI 596

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           WG+LL AC+ H  +EL +I  +H+ +L P     ++L+++L+A  G
Sbjct: 597 WGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEG 642



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 154/325 (47%), Gaps = 11/325 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G+ LH  +    +     +   LI  Y +C ++  A ++F+ + + +I  W A+   
Sbjct: 340 LQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCG 399

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +    + A  +F +M ++ +  +   + S+L AC  L  +  G +IHS + + S  TD
Sbjct: 400 YVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTD 459

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            ++ S+L+DMY+KCG ++ A ++F  M  K  +A NAM+ G   +G   EA+ L E++  
Sbjct: 460 MWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLK 519

Query: 274 PR-VKPNVVTWNTLISGFSKSGDQVMVSK---LFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            R  KP+ +T   ++   +  G   MV +    F LM   G+ PD   +  ++  L    
Sbjct: 520 LRDPKPDAITLKVVLCACTHVG---MVDEGLHYFNLMLTLGIVPDNEHYGCIVDLLGRAG 576

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             DEA++  ++M  Q   P      S+L AC     M  GK I G  I+     D+    
Sbjct: 577 LLDEAYNFIQKMPIQ---PNPVIWGSLLAACRVHHRMELGKII-GQHIIDLAPNDVGAHV 632

Query: 390 ALVDMYAKCGFISEARTLFDKMSER 414
            + +++A+ G   +   +   M  R
Sbjct: 633 LISNLHAEEGQWDDVEQVRGMMGSR 657


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 263/477 (55%), Gaps = 42/477 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +L+ G+I  A+ +   + +   ++ T ++  Y E  ++  AR +FDE+P+ N   W A+ 
Sbjct: 229 SLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMI 288

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y++ GY +EA+ +F +M  +G K NI      L A   L  +  G  IH  V K    
Sbjct: 289 ARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGID 348

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ SSLID+Y KCG  +  + VFD ++EK                            
Sbjct: 349 KDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK---------------------------- 380

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  NVV WN+++ G+S +G      +LF+L+     E +  SW ++J+G + N   
Sbjct: 381 -------NVVCWNSMVGGYSINGRLEEXEELFELIP----EKNDXSWGTIJAGYLENEQC 429

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           ++  + F  +L  G  P  +T SS+L ACAS A++ +G  +HG  I +G++ D+ V +AL
Sbjct: 430 EKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTAL 489

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--D 449
            DMYAKCG I  ++ +F++M E+N ++W  MI G A  G+  E++ LF +ME   ++  +
Sbjct: 490 TDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            L   +VL AC H GLV+ G   FN M++ Y I P+ +HY C+VDLL R+GRL EA E I
Sbjct: 550 ELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFI 609

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +T+  +P+   W ALL  CK + + ++AE  AK L +L   ++A  +LL+++YA+AG
Sbjct: 610 RTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAG 666



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 136/568 (23%), Positives = 236/568 (41%), Gaps = 143/568 (25%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ-------------------------- 127
           +  G +LHA LI +G +    IA KL+  Y  C+                          
Sbjct: 37  ITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISA 96

Query: 128 -----NIHHARMLFDEIPK-------------------------------TNIHRWIALT 151
                N+  AR+LFDE+P+                                N+  W A  
Sbjct: 97  YVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAI 156

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + R G + EA+ +F  +   G++ N     SV++ACG L D G G  I  LV+K  F 
Sbjct: 157 SGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFE 216

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V +SLI +  + G ++ A++VFD M ++D+V+  A++  YV+ G   EA  + +E+
Sbjct: 217 HYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEM 276

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
             P  + N ++W+ +I+ +S+SG      KLF  M  +G +P++                
Sbjct: 277 --P--ERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNI---------------- 316

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
                              +  +  L A AS   +  G  IHG    +G++ D+ + S+L
Sbjct: 317 -------------------SCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSL 357

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG--------------------- 430
           +D+Y KCG   + R +FD + E+N V WNSM+ G + +G                     
Sbjct: 358 IDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWG 417

Query: 431 ----------YCDEAIELFNQMEERKKLDHLS-FTAVLTACCHVGLVELGQRLFNMMQE- 478
                      C++ +E+FN +    +  + S F++VL AC  +  ++ G  +   + + 
Sbjct: 418 TIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL 477

Query: 479 --KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             +Y I   T     + D+  + G +  + ++ + M  E +   W  ++      G    
Sbjct: 478 GIQYDIFVGT----ALTDMYAKCGDIGSSKQVFERM-PEKNEISWTVMIQGLAESGFAVE 532

Query: 537 AEIAAKHLSELEPESAANN-MLLTDLYA 563
           + I  + + E   E A N  MLL+ L+A
Sbjct: 533 SLILFEEM-ERTSEVAPNELMLLSVLFA 559



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 178/388 (45%), Gaps = 36/388 (9%)

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
           T     +A+    + R Y Q  V++  +   QGL                   I  G  +
Sbjct: 3   TTFRTLLAIDPKKSFRAYAQTCVSLLKKFSNQGL-------------------ITQGNVL 43

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H+ ++K  F +  ++   L+ +Y  C    +  ++  E    D+V  N M+S YVQ G  
Sbjct: 44  HAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNL 103

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
            +A  L +E+  P  + N V+W+ LISG  K G        F+    +    +VVSWT+ 
Sbjct: 104 VQARLLFDEM--P--ERNEVSWSALISGLMKYGRVEESMWYFE----RNPFQNVVSWTAA 155

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ISG V N  N EA   F  +L  G  P   T +S++ AC    +   G  I G  +  G 
Sbjct: 156 ISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGF 215

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E  L V ++L+ +  + G I  AR +FD+M +R+ V+W +++      G   EA  +F++
Sbjct: 216 EHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDE 275

Query: 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAG 500
           M ER   + +S++A++      G  E   +LF+ M+QE +K  P    +AC +  L    
Sbjct: 276 MPER---NEISWSAMIARYSQSGYAEEALKLFSKMVQEGFK--PNISCFACTLSALASLR 330

Query: 501 RLAEAYEM---IKTMSTEPDLFVWGALL 525
            L+    +   +  +  + D+F+  +L+
Sbjct: 331 ALSAGINIHGHVTKIGIDKDVFIGSSLI 358



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 32/220 (14%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL +G  +H  +   G+ +   I + LI  Y +C      R++FD I + N+  W ++ 
Sbjct: 330 RALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMV 389

Query: 152 GAYARRGYH-------------------------------QEAVTVFHEMHIQGLKQNIF 180
           G Y+  G                                 ++ + VF+ + + G   N  
Sbjct: 390 GGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKS 449

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
              SVL AC  ++ +  G  +H  ++K     D FV ++L DMY+KCG +  +K+VF+ M
Sbjct: 450 TFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIG-TPRVKPN 279
            EK+ ++   M+ G  + G A E+L L EE+  T  V PN
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPN 549



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 116/255 (45%), Gaps = 24/255 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G  +H ++I  G+     + T L   Y +C +I  ++ +F+ +P+ N   W  +  
Sbjct: 463 SLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522

Query: 153 AYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTG-------EKIHSL 204
             A  G+  E++ +F EM     +  N  ++ SVL AC H   +  G       EK++ +
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGL 260
             K    T       ++D+ S+ G + +A++    +  + +  A  A++SG   Y    +
Sbjct: 583 KPKGKHYT------CVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKI 636

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSWT 319
           A      + ++     + N   +  L + ++ +G  + VS + +LMR KG++     SW 
Sbjct: 637 AERTAKKLWQLA----ENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWV 692

Query: 320 SVISGLVHNFCNDEA 334
            V    VH+F +++ 
Sbjct: 693 EV-RNQVHSFYSEDG 706


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 168/524 (32%), Positives = 275/524 (52%), Gaps = 40/524 (7%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L+P  ++  +++ +     +    LHA +   G      + T LI  Y  C +++ AR  
Sbjct: 39  LNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQA 98

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FD I   ++  W  +   YA     Q+++ +F EM + G   N F    VLKAC  L   
Sbjct: 99  FDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAF 158

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G+ +H  VLK  +  D +V   L+D+Y+K G      +VF+EM + D++  + M+S Y
Sbjct: 159 SVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRY 218

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTW-------------------------------- 283
            Q   + EA+ L  ++    V PN  T+                                
Sbjct: 219 AQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNV 278

Query: 284 ---NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
              N L+  ++K G      KLF  +  +    + V+W ++I G V +   D+A   +K 
Sbjct: 279 FVSNALMDVYAKCGRLDNSMKLFMELPNR----NEVTWNTMIVGYVQSGDGDKALSLYKN 334

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           ML      +  T SS+L ACAS A M  G +IH  ++    + D+ V +AL+DMYAKCG 
Sbjct: 335 MLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGS 394

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTA 459
           I  AR +FD +SER+ ++WN+MI G + HG   EA++ F  M+E + + + L+F ++L+A
Sbjct: 395 IKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSA 454

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C + GL+++GQ  F  M + Y I P  EHY CMV LLGR+G L +A ++I+ +  EP++ 
Sbjct: 455 CSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVK 514

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           VW ALLGAC  H +++L  ++A+ + +++P+  A ++LL+++YA
Sbjct: 515 VWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYA 558



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 218/450 (48%), Gaps = 50/450 (11%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P  N   ++ L   Y +     E V +F  +H +G + N FV  ++LK    +      
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
             +H+ + K    ++AFV ++LID Y+ CGSV  A++ FD +  KD+V+   MV+ Y + 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISG----------------------------- 289
               ++L L  E+      PN  T+  ++                               
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 290 ------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
                 ++K GD   V ++F+ M     + DV+ W+ +IS    +  + EA + F +M  
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMP----KHDVIPWSFMISRYAQSNQSREAVELFGQMRR 236

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
               P   T +S+L +CAS  N++ GK++H   + +G++G++ V +AL+D+YAKCG +  
Sbjct: 237 AFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDN 296

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCH 462
           +  LF ++  RN VTWN+MI G    G  D+A+ L+ N +E + +   +++++VL AC  
Sbjct: 297 SMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACAS 356

Query: 463 VGLVELGQRLFNM----MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           +  +ELG ++ ++    + +K  ++        ++D+  + G +  A  ++  M +E D 
Sbjct: 357 LAAMELGTQIHSLSLKTIYDKDVVVGNA-----LIDMYAKCGSIKNA-RLVFDMLSERDE 410

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELE 548
             W A++     HG +  A  A + + E E
Sbjct: 411 ISWNAMISGYSMHGLVGEALKAFQMMQETE 440



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 39/292 (13%)

Query: 313 PD--VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           PD   VS+ ++I G V +F  DE  D F  +  +G        ++IL    S        
Sbjct: 2   PDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAY 61

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            +H C   +G E +  V +AL+D YA CG ++ AR  FD ++ ++ V+W  M+   A + 
Sbjct: 62  SLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121

Query: 431 YCDEAIELFNQMEERK-KLDHLSFTAVLTAC-------------------CH-------V 463
              ++++LF +M       +H +F  VL AC                   C+       V
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 464 GLVELGQRL--FNMMQEKYKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTMSTE---P 516
           GL++L  +    N +   ++ MP+ +   ++ M+    ++ +  EA E+   M      P
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP 241

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLTDLYANAG 566
           + F + ++L +C +  N++L +    H+ +  L+     +N L+ D+YA  G
Sbjct: 242 NQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALM-DVYAKCG 292


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/533 (32%), Positives = 273/533 (51%), Gaps = 64/533 (12%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYT-ECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            + K LHA LI + L     + + +I  Y+    N+H A ++F++I    +  W  +   
Sbjct: 31  DTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRG 90

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            ++  +  EA+ ++  MH QG+  N   +  + KAC  +SDI +G KIH   LK  F + 
Sbjct: 91  LSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESY 150

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++LI MY+ CG +  A+K+FD M+++D+V+ N ++ GY Q     E L L + +  
Sbjct: 151 LFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTA 210

Query: 274 PRVKPNVVT-------------W----------------------NTLISGFSKSGDQVM 298
             +K + VT             W                      NTLI  + +     +
Sbjct: 211 ANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAEL 270

Query: 299 VSKLFQLMRAKGV---------------------------EPDVVSWTSVISGLVHNFCN 331
              +F  MR + +                           + DV+SWTS+I+G       
Sbjct: 271 AQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQF 330

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            +A   F+EM++    P   T++S+L ACA    +  G  +H      GV+ D++V ++L
Sbjct: 331 SDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSL 390

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           +DMY KCG + +A  +F +M ++++V+W S+I G A +G+ + A++LF+QM  E  +  H
Sbjct: 391 IDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTH 450

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +F  +L AC H GLV  G   F  M+  + ++P  +HY C+VDLL R+G + +AYE IK
Sbjct: 451 GTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIK 510

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
            M   PD+ VW  LL ACK HGN+ LAEIA K L EL+P  + N +LL++ YA
Sbjct: 511 KMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYA 563



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 20/315 (6%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLI-VSGLARLTQIA----------- 116
           II    HL    +++ +  YI++  L+    L   LI + G   L ++A           
Sbjct: 223 IILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERN 282

Query: 117 ----TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
                 L+  + +  N+  AR LFD +PK ++  W ++   Y++     +AV +F EM  
Sbjct: 283 IVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMA 342

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
             +K +   + SVL AC HL  +  G  +H  + +H    D +V +SLIDMY KCG VEK
Sbjct: 343 AKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEK 402

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A +VF  M +KD V+  +++SG    G A  AL+L  ++    V+P   T+  ++   + 
Sbjct: 403 ALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAH 462

Query: 293 SGDQVMVSKLFQLMRA-KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           +G      + F+ M +  G+ P +  +  V+  L  +   D+A++  K+M      P   
Sbjct: 463 AGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKM---PIVPDVV 519

Query: 352 TISSILPACASAANM 366
               +L AC    N+
Sbjct: 520 VWRILLSACKLHGNV 534


>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 520

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 168/516 (32%), Positives = 276/516 (53%), Gaps = 49/516 (9%)

Query: 59  IFIEAHYK-MPIISRSFHLSPAAY-SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA 116
           I    HY   P+      LSPA Y +  ++ +I   A ++GK +HA +I +G      I+
Sbjct: 13  ILPSNHYSTFPLKQNVSSLSPAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPDLNIS 72

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
            KL+  + +C  + +AR +FDE+PK  +  +  +   Y + G  +E + +   M   G K
Sbjct: 73  IKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSYSGEK 132

Query: 177 QNIFVIPSVLKACGHLSDIGTGEK-----IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
            + + +  VLKA           +     +H+ ++K     D  ++++L+D Y K G +E
Sbjct: 133 ADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLE 192

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-GTPRVKPNVVTWNTLISGF 290
            A+ VF+ M ++++V   +M+SGY+ +G   +A    EEI  T +VK ++V +N ++ GF
Sbjct: 193 SARTVFETMKDENVVCCTSMISGYMNQGFVEDA----EEIFNTTKVK-DIVVYNAMVEGF 247

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           S+SG+                                      + D +  M   GF P  
Sbjct: 248 SRSGETA----------------------------------KRSVDMYISMQRAGFHPNI 273

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +T +S++ ACA   +   G+++H   +  GV   + + S+L+DMYAKCG I++AR +FD+
Sbjct: 274 STFASVIGACAVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQ 333

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELG 469
           M E+N  +W SMI G   +G  +EA+ELF +M+E R + ++++F   L+AC H GLV+ G
Sbjct: 334 MQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKG 393

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             +F  MQ  Y + P+ EHYAC+VDL+GRAG L +A+E  + M   PD  +W ALL +C 
Sbjct: 394 YEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCN 453

Query: 530 NHGNIELAEIAAKHLSELEPESAANNML-LTDLYAN 564
            HGN+ELA IAA  L +L  +      L L+++YA+
Sbjct: 454 LHGNVELASIAASELFKLNADKRPGAYLALSNVYAS 489


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 279/505 (55%), Gaps = 34/505 (6%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           Q GK +H  ++  GL R   +   L+  Y EC  + +AR++FD++ + ++  W  +  + 
Sbjct: 111 QLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSL 170

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           +R      A+ +  EM+   ++ +   + S++      +++  G+ +H+ V+++S     
Sbjct: 171 SRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHM 230

Query: 215 FV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            V   ++L+DMY+KCG +  A+++F+ + +K +V+  AM++G ++     E   L   + 
Sbjct: 231 GVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQ 290

Query: 273 TPRVKPNVVTWNTLI--SGFSKS---GDQV---------------------MVSKLFQLM 306
              + PN +T  +LI   GF+ +   G Q+                     M  K   + 
Sbjct: 291 EENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIR 350

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            A+ +       DV+ WT+++S      C D+AF+ F +M + G  PT  TI S+L  CA
Sbjct: 351 NARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCA 410

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
            A  +  GK +H       VE D  + +ALVDMYAKCG I+ A  LF +   R+   WN+
Sbjct: 411 VAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 470

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G A HGY +EA+++F +ME +  K + ++F  +L AC H GLV  G++LF  M   +
Sbjct: 471 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 530

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            ++P+ EHY CMVDLLGRAG L EA+EMIK+M  +P+  VWGAL+ AC+ H N +L E+A
Sbjct: 531 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELA 590

Query: 541 AKHLSELEPESAANNMLLTDLYANA 565
           A  L E+EPE+   N+L++++YA A
Sbjct: 591 ATQLLEIEPENCGYNVLMSNIYAAA 615



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 193/415 (46%), Gaps = 49/415 (11%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F+ PSVLKACG +S    G++IH  VLK     D FV ++L+ MY +C  VE A+ VFD+
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN-------------------- 279
           M+E+D+V+ + M+    +      AL L+ E+   +V+P+                    
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 280 -----------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
                            V T   L+  ++K G   +  +LF  +  K     VVSWT++I
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQK----TVVSWTAMI 270

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           +G + +   +E    F  M  +   P   T+ S++  C     ++ GK++H   +  G  
Sbjct: 271 AGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFS 330

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
             L + +ALVDMY KC  I  AR LFD    R+ + W +M+   A     D+A  LF+QM
Sbjct: 331 VSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM 390

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
                +   ++  ++L+ C   G ++LG+ + + + +K ++         +VD+  + G 
Sbjct: 391 RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYI-DKERVEVDCILNTALVDMYAKCGD 449

Query: 502 LAEAYEM-IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           +  A  + I+ +S   D+ +W A++     HG     E A    +E+E +    N
Sbjct: 450 INAAGRLFIEAISR--DICMWNAIITGFAMHG---YGEEALDIFAEMERQGVKPN 499



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 172/392 (43%), Gaps = 43/392 (10%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI--ATKLITFYTECQNIHHARM 134
           S  A    + ++     ++ GK +HA +I +       +   T L+  Y +C ++  AR 
Sbjct: 194 SEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQ 253

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           LF+ + +  +  W A+     R    +E   +F  M  + +  N   + S++  CG    
Sbjct: 254 LFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGA 313

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G+++H+ +L++ F     + ++L+DMY KC  +  A+ +FD    +D++   AM+S 
Sbjct: 314 LQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSA 373

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVT------------------W------------- 283
           Y Q     +A NL +++ T  V+P  VT                  W             
Sbjct: 374 YAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVD 433

Query: 284 ---NT-LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
              NT L+  ++K GD     +LF     + +  D+  W ++I+G   +   +EA D F 
Sbjct: 434 CILNTALVDMYAKCGDINAAGRLF----IEAISRDICMWNAIITGFAMHGYGEEALDIFA 489

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKC 398
           EM  QG  P   T   +L AC+ A  +  GK++    +   G+   +     +VD+  + 
Sbjct: 490 EMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRA 549

Query: 399 GFISEARTLFDKMS-ERNTVTWNSMIFGCANH 429
           G + EA  +   M  + NT+ W +++  C  H
Sbjct: 550 GLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 581



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 141/279 (50%), Gaps = 4/279 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ GK LHA ++ +G +    +AT L+  Y +C +I +AR LFD     ++  W A+  
Sbjct: 313 ALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLS 372

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AYA+     +A  +F +M   G++     I S+L  C     +  G+ +HS + K     
Sbjct: 373 AYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEV 432

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + ++L+DMY+KCG +  A ++F E + +DI   NA+++G+   G   EAL++  E+ 
Sbjct: 433 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 492

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCN 331
              VKPN +T+  L+   S +G      KLF+ M    G+ P +  +  ++  L      
Sbjct: 493 RQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLL 552

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           DEA +  K M  +   P +    +++ AC    N + G+
Sbjct: 553 DEAHEMIKSMPIK---PNTIVWGALVAACRLHKNPQLGE 588


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/506 (33%), Positives = 272/506 (53%), Gaps = 40/506 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++  GL      A  L+  Y++   I  A  +F +I   ++  W A+      
Sbjct: 202 GRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVL 261

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              +  A+ +  EM   G + N+F + S LKAC  +     G ++HS ++K    +D F 
Sbjct: 262 HDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFA 321

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG----------------- 259
              L+DMYSKC  ++ A++ +D M +KDI+A NA++SGY Q G                 
Sbjct: 322 AVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI 381

Query: 260 ------LAT--------EALNLVEEIGTPRVKPNVVT----WNTLISGFSKSGDQVMVSK 301
                 L+T        +A+ + ++I T  +K  + +     N+L+  + K       SK
Sbjct: 382 DFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASK 441

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F+    +    D+V++TS+I+        +EA   + +M      P     SS+L ACA
Sbjct: 442 IFE----ERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA 497

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + +   +GK++H  AI  G   D+   ++LV+MYAKCG I +A   F ++  R  V+W++
Sbjct: 498 NLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSA 557

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G A HG+  EA+ LFNQM  +    +H++  +VL AC H GLV  G++ F  M+  +
Sbjct: 558 MIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMF 617

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I P  EHYACM+DLLGR+G+L EA E++ ++  E D FVWGALLGA + H NIEL + A
Sbjct: 618 GIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKA 677

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           AK L +LEPE +  ++LL ++YA+AG
Sbjct: 678 AKMLFDLEPEKSGTHVLLANIYASAG 703



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/474 (29%), Positives = 242/474 (51%), Gaps = 42/474 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LHA LI  G +R   +   L+T Y++C+   +AR L DE  + ++  W +L   Y + G+
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA+ VF+EM + G+K N F  PSVLKAC    D+  G K+H + +   F +D FV ++
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ MY+KCG ++ ++++F  +VE+++V+ NA+ S YVQ  L  EA+ L +E+    + PN
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182

Query: 280 -----------------------------------VVTWNTLISGFSKSGDQVMVSKLFQ 304
                                                + N L+  +SK+G+      +FQ
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +      PDVVSW ++I+G V + CND A     EM   G  P   T+SS L ACA+  
Sbjct: 243 DI----AHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
               G+++H   I M    DL     LVDMY+KC  + +AR  +D M +++ + WN++I 
Sbjct: 299 FKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALIS 358

Query: 425 GCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G +  G   +A+ LF++M  E    +  + + VL +   +  +++ +++ + +  K  I 
Sbjct: 359 GYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQI-HTISIKSGIY 417

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
                   ++D  G+   + EA ++ +  + E DL  + +++ A   +G+ E A
Sbjct: 418 SDFYVINSLLDTYGKCNHIDEASKIFEERTWE-DLVAYTSMITAYSQYGDGEEA 470



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 236/478 (49%), Gaps = 42/478 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L  G+ +H   +V+G      +A  L+  Y +C  +  +R LF  I + N+  W AL 
Sbjct: 96  RDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALF 155

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y +     EAV +F EM   G+  N F I  +L AC  L +   G KIH L+LK    
Sbjct: 156 SCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLD 215

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F  ++L+DMYSK G +E A  VF ++   D+V+ NA+++G V       AL L++E+
Sbjct: 216 LDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM 275

Query: 272 GTPRVKPNVVTWNTLIS-----GFSKSGDQV---------------------MVSKLFQL 305
                +PN+ T ++ +      GF + G Q+                     M SK   +
Sbjct: 276 KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMM 335

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCND--EAFDTFKEMLSQGFCPTSATISSILP 358
             A+       + D+++W ++ISG  ++ C D  +A   F +M S+       T+S++L 
Sbjct: 336 DDARRAYDSMPKKDIIAWNALISG--YSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLK 393

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           + AS   ++  K+IH  +I  G+  D +V ++L+D Y KC  I EA  +F++ +  + V 
Sbjct: 394 SVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVA 453

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           + SMI   + +G  +EA++L+ QM++   K D    +++L AC ++   E G++L ++  
Sbjct: 454 YTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL-HVHA 512

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD--LFVWGALLGACKNHGN 533
            K+  M        +V++  + G + +A    +  S  P+  +  W A++G    HG+
Sbjct: 513 IKFGFMCDIFASNSLVNMYAKCGSIEDA---DRAFSEIPNRGIVSWSAMIGGYAQHGH 567



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 186/384 (48%), Gaps = 43/384 (11%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H+ ++K  F  D  + + L+ +YSKC     A+K+ DE  E D+V+ ++++SGYVQ G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD----- 314
              EAL +  E+    VK N  T+ +++   S   D  M  K+  +    G E D     
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 315 --------------------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
                                     VVSW ++ S  V +    EA   FKEM+  G  P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              +IS IL ACA       G++IHG  + MG++ D    +ALVDMY+K G I  A  +F
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVE 467
             ++  + V+WN++I GC  H   D A+ L ++M+    + +  + ++ L AC  +G  E
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKE 301

Query: 468 LGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           LG++L + +    K+   ++ +A   +VD+  +   + +A     +M  + D+  W AL+
Sbjct: 302 LGRQLHSSL---IKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM-PKKDIIAWNALI 357

Query: 526 GA---CKNHGNIELAEIAAKHLSE 546
                C +H  ++   + +K  SE
Sbjct: 358 SGYSQCGDH--LDAVSLFSKMFSE 379



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A++  K +H   I SG+     +   L+  Y +C +I  A  +F+E    ++  + ++ 
Sbjct: 399 QAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMI 458

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AY++ G  +EA+ ++ +M    +K + F+  S+L AC +LS    G+++H   +K  F 
Sbjct: 459 TAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFM 518

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F  +SL++MY+KCGS+E A + F E+  + IV+ +AM+ GY Q G   EAL L  ++
Sbjct: 519 CDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQM 578

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEP 313
               V PN +T  +++   + +G      + F+ M    G++P
Sbjct: 579 LRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKP 621


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/505 (34%), Positives = 266/505 (52%), Gaps = 33/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +HA ++ S           LI FYT+C  +   + LFD +   NI  W  +   
Sbjct: 259 LKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAG 318

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +  Y  EAV +  EM   G K + +   SVL +CG +  +  G +IHS V+K     D
Sbjct: 319 YMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHD 378

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++LIDMYSKC +++ AK+VFD +    +V  NAM+ GY ++G    AL + +E+  
Sbjct: 379 NFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRL 438

Query: 274 PRVKPNVVTW-------------------NTLISGFSKSGDQVMVSKLFQLMR------- 307
             V P+ +T+                   + LI  +  S D+   S L  +         
Sbjct: 439 KHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRD 498

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V       D+V W S+ SG      ++EAF  + ++      P   T +++  A + 
Sbjct: 499 ARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASI 558

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A++  G++ H   + MG+E D  + +ALVDMYAKCG + EA  +F     ++T  WNSM
Sbjct: 559 LASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSM 618

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I   A HG  +EA+ +F  M       ++++F +VL+AC HVG VE G + +N M  +Y 
Sbjct: 619 ISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMA-RYG 677

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  EHYA +V LLGRAGRL EA E I+ M+  P   VW +LL AC+  GN+ELA+ AA
Sbjct: 678 IEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAA 737

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           +    ++P  + + ++L++++A+ G
Sbjct: 738 EMAISIDPMDSGSYVMLSNIFASKG 762



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 251/502 (50%), Gaps = 56/502 (11%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           + ++++   + +H Q+++ GL     ++  L+  Y +  ++  A  LFD++P  N+  W 
Sbjct: 51  VSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWS 110

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           ++   Y + GY+++A+  F E     + K N +++ S+++AC        G ++HS V+K
Sbjct: 111 SVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIK 170

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             FG D +V +SL+ +Y+K G ++KA+ VFD +V K  V   A+++GY + G +  +L L
Sbjct: 171 SGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQL 230

Query: 268 VEEIGTPRVKP-----------------------------------NVVTWNTLISGFSK 292
              +    V P                                   +V T+N LI  ++K
Sbjct: 231 FNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTK 290

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            G       LF  +  K    +++SWT++I+G + N  + EA +   EM   G+ P    
Sbjct: 291 CGRVKAGKALFDRLDVK----NIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYA 346

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
            SS+L +C S   ++ G++IH   I + +E D  V +AL+DMY+KC  + +A+ +FD ++
Sbjct: 347 CSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVT 406

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-----LSFTAVLTACCHVGLVE 467
             + V +N+MI G +  GY   A+E+F +M    +L H     L+F ++L     +  ++
Sbjct: 407 CHSVVYYNAMIEGYSRQGYLCGALEVFQEM----RLKHVSPSFLTFVSLLGLSAALLCLQ 462

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           L +++  ++  KY         + ++D+  +   + +A  + +  +T  D+ VW +L   
Sbjct: 463 LSKQIHGLII-KYGFSLDKFTSSALIDVYSKCSCIRDARYVFEG-TTNKDIVVWNSLFSG 520

Query: 528 CKNHGNIEL-AEIAAKHLSELE 548
                N++L +E A K  S+L+
Sbjct: 521 Y----NLQLKSEEAFKLYSDLQ 538



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 228/477 (47%), Gaps = 38/477 (7%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + G  +H+ +I SG      + T L+  Y +   I  AR++FD +       W A+   Y
Sbjct: 159 EPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGY 218

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            + G  + ++ +F+ M    +  + +V+ S+L AC  L  +  G++IH+ VL+     D 
Sbjct: 219 TKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDV 278

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
              + LID Y+KCG V+  K +FD +  K+I++   M++GY+Q     EA+ LV E+   
Sbjct: 279 STYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRM 338

Query: 275 RVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRA 308
             KP+    +++++        + G Q+                     M SK   L  A
Sbjct: 339 GWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDA 398

Query: 309 KGVEPDVVSWTSVI--SGLVHNFCND----EAFDTFKEMLSQGFCPTSATISSILPACAS 362
           K V  DVV+  SV+  + ++  +        A + F+EM  +   P+  T  S+L   A+
Sbjct: 399 KRV-FDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAA 457

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              ++  K+IHG  I  G   D    SAL+D+Y+KC  I +AR +F+  + ++ V WNS+
Sbjct: 458 LLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSL 517

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKY 480
             G       +EA +L++ ++  R++ +  +F A+ TA   +  +  GQ+  N +M+   
Sbjct: 518 FSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGL 577

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +  P   +   +VD+  + G + EA E I + S   D   W +++     HG +E A
Sbjct: 578 ESDPFITN--ALVDMYAKCGSVEEA-EKIFSSSVWKDTACWNSMISMYAQHGKVEEA 631



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 40/374 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G+ +H+ +I   L     +   LI  Y++C  +  A+ +FD +   ++  + A+  
Sbjct: 359 ALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIE 418

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y+R+GY   A+ VF EM ++ +  +     S+L     L  +   ++IH L++K+ F  
Sbjct: 419 GYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSL 478

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  S+LID+YSKC  +  A+ VF+    KDIV  N++ SGY  +  + EA  L  ++ 
Sbjct: 479 DKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQ 538

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
             R +PN  T+                                   N L+  ++K G   
Sbjct: 539 LSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVE 598

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K+F    +  V  D   W S+IS    +   +EA   F+ M+S    P   T  S+L
Sbjct: 599 EAEKIF----SSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVL 654

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NT 416
            AC+    +  G + +      G+E  +   +++V +  + G ++EAR   +KM+ R   
Sbjct: 655 SACSHVGFVEDGLQHYNSMARYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAA 714

Query: 417 VTWNSMIFGCANHG 430
           + W S++  C   G
Sbjct: 715 LVWRSLLSACRVFG 728



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 159/329 (48%), Gaps = 16/329 (4%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           Q  K +H  +I  G +     ++ LI  Y++C  I  AR +F+     +I  W +L   Y
Sbjct: 462 QLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGY 521

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
             +   +EA  ++ ++ +   + N F   ++  A   L+ +  G++ H+ V+K    +D 
Sbjct: 522 NLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDP 581

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           F+ ++L+DMY+KCGSVE+A+K+F   V KD    N+M+S Y Q G   EAL + E + + 
Sbjct: 582 FITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSN 641

Query: 275 RVKPNVVTWNTLIS-----GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            + PN VT+ +++S     GF + G Q      +  M   G+EP +  + SV++ L    
Sbjct: 642 NINPNYVTFVSVLSACSHVGFVEDGLQ-----HYNSMARYGIEPGIEHYASVVTLLGRAG 696

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG-DLHVR 388
              EA +  ++M  +   P +    S+L AC    N+   K  H   + + ++  D    
Sbjct: 697 RLTEAREFIEKMTIR---PAALVWRSLLSACRVFGNVELAK--HAAEMAISIDPMDSGSY 751

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTV 417
             L +++A  G   + + L  KM     V
Sbjct: 752 VMLSNIFASKGMWGDVKRLRLKMDVNGVV 780



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           SQ        ++++L A  S  ++   +++H   ++ G++ D+ + + L+  Y K G + 
Sbjct: 33  SQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVF 92

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTAC 460
           +A TLFDKM  RN V+W+S++      GY ++A+  F + +     KL+     +++ AC
Sbjct: 93  DAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRAC 152


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 47/506 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW-IALTGAYAR 156
           K +HAQ++++ + +   + +K+I    + +++ +A ++F+++ K NI+ + + L G    
Sbjct: 50  KQIHAQMLINSIPKPNFLLSKII----DLKDLAYASLVFNQLTKPNIYAFNVMLRGLATT 105

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              +   V +++++   GLK N F  P +  ACG++  +  G+  H LV K     D +V
Sbjct: 106 WKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYV 165

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
             SLI MY++CG +  A+KVFDEM ++D+V+ N+M+SGY + G   EA+ L  E+     
Sbjct: 166 NHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGF 225

Query: 277 KPNVVT------------------W-----------------NTLISGFSKSGDQVMVSK 301
           +P+ +T                  W                 + LI  + K GD +   +
Sbjct: 226 EPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARR 285

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M  K    DVV+W ++I+G   N  ++EA   F  M   G  P   T+  +L AC+
Sbjct: 286 VFDSMPNK----DVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACS 341

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           +   +  GK +   A   G++ D++V SAL+DMYAKCG + +A  +F+ M  +N V+WN+
Sbjct: 342 TIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNA 401

Query: 422 MIFGCANHGYCDEAIELFNQMEERK---KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           MI   A HG   EA+ LF +M +     + + ++F  VL+AC H GLV+ G++LF  M  
Sbjct: 402 MISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNL 461

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + ++P+ EHY+CMVDL  RAG L EA+++IK M  +PD  V G+LLGAC+   N ++ E
Sbjct: 462 SFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGE 521

Query: 539 IAAKHLSELEPESAANNMLLTDLYAN 564
              +   E+E  ++ N ++ + +YAN
Sbjct: 522 RVIQLFLEMELSNSGNYVISSKIYAN 547



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 180/390 (46%), Gaps = 38/390 (9%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L  GKI H  +  +GL     +   LIT Y  C  +  AR +FDE+   ++  W ++ 
Sbjct: 142 RGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMI 201

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y++ G+ +EA+ +F EM  +G + +   + SVL ACG L D+G G  +   VL+    
Sbjct: 202 SGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKME 261

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            ++++ S+LIDMY KCG +  A++VFD M  KD+V  NA+++GY Q G + EA+ L   +
Sbjct: 262 VNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGM 321

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV---------------- 315
                 P+ VT   ++S  S  G   +   +      KG++ DV                
Sbjct: 322 REAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSL 381

Query: 316 ---------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILP 358
                          VSW ++IS L  +    EA   F+ M        P   T   +L 
Sbjct: 382 DDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLS 441

Query: 359 ACASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NT 416
           AC  A  +  G+++     +  G+   +   S +VD+ A+ G + EA  L  KM  + + 
Sbjct: 442 ACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDE 501

Query: 417 VTWNSMIFGCA---NHGYCDEAIELFNQME 443
           +   S++  C    N    +  I+LF +ME
Sbjct: 502 IVLGSLLGACQRRRNADVGERVIQLFLEME 531


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 267/470 (56%), Gaps = 44/470 (9%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +F+++P+ N   W  +     + GY  EA+ +F EM + G + + F +  V+ AC ++  
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---GSVEKAKKVFDEMVEKDIVAMNAM 251
           +  G+++HS  ++H    D  V   LI+MY+KC   GS+  A+K+FD++++ ++ +  AM
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 252 VSGYVQR-GLATEALNLVEEIGTPRVKPNVVTW--------------------------- 283
           ++GYVQ+ G   EAL+L   +    V PN  T+                           
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 284 --------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                   N+LIS +++SG      K F ++     E +++S+ +VI     N  ++EA 
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDIL----FEKNLISYNTVIDAYAKNLNSEEAL 462

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + F E+  QG   ++ T +S+L   AS   + +G++IH   I  G++ +  V +AL+ MY
Sbjct: 463 ELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMY 522

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           ++CG I  A  +F+ M +RN ++W S+I G A HG+  +A+ELF++M EE  + + +++ 
Sbjct: 523 SRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYI 582

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVL+AC HVGLV  G + F  M  ++ ++PR EHYACMVD+LGR+G L+EA + I +M  
Sbjct: 583 AVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPY 642

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           + D  VW   LGAC+ HGN+EL + AAK + E EP   A  +LL++LYA+
Sbjct: 643 KADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYAS 692



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 233/505 (46%), Gaps = 45/505 (8%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           ++ +  H     YS  ++  IR R+   G ++H +L  S L   +     LI+ Y++C  
Sbjct: 57  MVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQ 116

Query: 129 IHHARMLFDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
              A  +F  +  + ++  W A+   +A       A+  F +M   G   N +   +  +
Sbjct: 117 WEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATR 176

Query: 188 ACGHLSDIGTGEKIHSLVLKHSF-GTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEKDI 245
           AC     +  G+ I   V+K  +  +D  V   LIDM+ K  G +  A KVF++M E++ 
Sbjct: 177 ACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS-----GDQVMVS 300
           V    M++  +Q G A EA++L  E+     +P+  T + +IS  +       G Q+   
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 301 KL---FQLMRAKG--------------------------VEPDVVSWTSVISGLVHNFCN 331
            +     L R  G                          ++ +V SWT++I+G V     
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 332 D-EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           D EA D F+ M+     P   T SS L ACA+ A +R G+++   A+ +G      V ++
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
           L+ MYA+ G I +AR  FD + E+N +++N++I   A +   +EA+ELFN++E++     
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYE 507
             +F ++L+    +G +  G+++   +    K   +     C  ++ +  R G +  A++
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARV---IKSGLKLNQSVCNALISMYSRCGNIESAFQ 533

Query: 508 MIKTMSTEPDLFVWGALLGACKNHG 532
           + + M  + ++  W +++     HG
Sbjct: 534 VFEDME-DRNVISWTSIITGFAKHG 557



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 177/375 (47%), Gaps = 45/375 (12%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIALTGA 153
           G+ LH+Q I  GL     +   LI  Y +C    ++  AR +FD+I   N+  W A+   
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349

Query: 154 YARRG-YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y ++G Y +EA+ +F  M +  +  N F   S LKAC +L+ +  GE++ +  +K  F +
Sbjct: 350 YVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSS 409

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-- 270
              V +SLI MY++ G ++ A+K FD + EK++++ N ++  Y +   + EAL L  E  
Sbjct: 410 VNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE 469

Query: 271 --------------------IGT--------PRV-----KPNVVTWNTLISGFSKSGDQV 297
                               IGT         RV     K N    N LIS +S+ G+  
Sbjct: 470 DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIE 529

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F+ M  +    +V+SWTS+I+G   +    +A + F +ML +G  P   T  ++L
Sbjct: 530 SAFQVFEDMEDR----NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVL 585

Query: 358 PACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-N 415
            AC+    +  G K         GV   +   + +VD+  + G +SEA    + M  + +
Sbjct: 586 SACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKAD 645

Query: 416 TVTWNSMIFGCANHG 430
            + W + +  C  HG
Sbjct: 646 ALVWRTFLGACRVHG 660



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 196/425 (46%), Gaps = 58/425 (13%)

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           H+   T+ H +H QG   ++      LK C        G  +H  + +     D+  ++S
Sbjct: 48  HKAISTLEHMVH-QGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106

Query: 220 LIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEAL----NLVEE---- 270
           LI +YSKCG  EKA  +F  M   +D+++ +AMVS +    +   AL    +++E     
Sbjct: 107 LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 271 ----------------------------IGTPRVKPNVVTWNTLISGFSKS-GDQVMVSK 301
                                       + T  ++ +V     LI  F K  GD V   K
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F+ M     E + V+WT +I+ L+      EA D F EM+  G+ P   T+S ++ ACA
Sbjct: 227 VFEKMP----ERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACA 282

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC---GFISEARTLFDKMSERNTVT 418
           +   +  G+++H  AI  G+  D  V   L++MYAKC   G +  AR +FD++ + N  +
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 419 WNSMIFGCANH-GYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           W +MI G     GY +EA++LF  M     + +H +F++ L AC ++  + +G+++F   
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT-- 400

Query: 477 QEKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              + +        C    ++ +  R+GR+ +A +    +  E +L  +  ++ A   + 
Sbjct: 401 ---HAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDAYAKNL 456

Query: 533 NIELA 537
           N E A
Sbjct: 457 NSEEA 461



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 164/329 (49%), Gaps = 11/329 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +    +  G + +  +A  LI+ Y     I  AR  FD + + N+  +  +  
Sbjct: 391 ALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AYA+    +EA+ +F+E+  QG+  + F   S+L     +  IG GE+IH+ V+K     
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKL 510

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++LI MYS+CG++E A +VF++M ++++++  ++++G+ + G AT+AL L  ++ 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
              V+PN+VT+  ++S  S  G      K F+ M  + GV P +  +  ++  L  +   
Sbjct: 571 EEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSL 630

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA- 390
            EA      M    +   +    + L AC    N+  GK     A  M +E + H  +A 
Sbjct: 631 SEAIQFINSM---PYKADALVWRTFLGACRVHGNLELGKH----AAKMIIEQEPHDPAAY 683

Query: 391 --LVDMYAKCGFISEARTLFDKMSERNTV 417
             L ++YA      E   +   M E+N +
Sbjct: 684 ILLSNLYASTSKWDEVSNIRKAMKEKNLI 712



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 154/308 (50%), Gaps = 15/308 (4%)

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV----EEIGTPRVKPNVVTW 283
           G + KA    + MV +         S ++++ + T + ++     E++    ++ + VT 
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           N+LIS +SK G     + +FQLM   G   D++SW++++S   +N     A  TF +M+ 
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLM---GSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKC-GFI 401
            G+ P     ++   AC++A  +  G  I G  +  G ++ D+ V   L+DM+ K  G +
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTAC 460
             A  +F+KM ERN VTW  MI      GY  EAI+LF +M     + D  + + V++AC
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISAC 281

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA---GRLAEAYEMIKTMSTEPD 517
            ++ L+ LGQ+L +        + R     C++++  +    G +  A ++   +  + +
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVG-CCLINMYAKCSVDGSMCAARKIFDQI-LDHN 339

Query: 518 LFVWGALL 525
           +F W A++
Sbjct: 340 VFSWTAMI 347


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 262/477 (54%), Gaps = 11/477 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ--NIHHARMLFDEIPKTNIHRWIAL 150
           +L   K +HA  + +G  +   ++  L+  Y      N++ A  +F+ +P  N+  +  +
Sbjct: 42  SLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNII 101

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
                +     +A+  +++M I   + N F  P++ KAC        G ++H+ V+K   
Sbjct: 102 IKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGL 161

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D  + S+ I MY   G VE A+++  E    D++  NAM+ GY++ G    A    +E
Sbjct: 162 SGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAA----KE 217

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
           +       NV +WN ++SG +K G      +LF  M+    E + +SW+++I G +    
Sbjct: 218 LFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMK----EKNEISWSAMIDGYIKGGY 273

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA + F  M  +   P    +SS+L ACA+   + +G+ IH          D  + +A
Sbjct: 274 YKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTA 333

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
           LVDMYAKCG +  A  +F+KM ++   TWN+MI G   HG  ++AIELF +M+++K + +
Sbjct: 334 LVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPN 393

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++   VL+AC H G+V+ G R+FN M+E Y I P  EHY C+VDLLGRAG L EA E++
Sbjct: 394 GITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVM 453

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +M  EP   VWGALLGAC+ HG++EL E   K L ELEP+++    LL+++YA AG
Sbjct: 454 YSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAG 510


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 249/472 (52%), Gaps = 42/472 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYT--ECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K +H QL+  G  R     ++L+T Y   E  N+ +ARM+FD I   N   W  +  AY+
Sbjct: 28  KQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYS 87

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                +EA+ ++H+M    +  N +  P +LKAC  LS +    +IH  ++K  FG++ +
Sbjct: 88  NSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVY 147

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             +SL+ +Y+  GS++ A  +FD +  +DIV                             
Sbjct: 148 ATNSLLRVYAISGSIKSAHVLFDLLPSRDIV----------------------------- 178

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                 +WNT+I G+ K G+  M  K+FQ M     E +V+SWTS+I G V    + EA 
Sbjct: 179 ------SWNTMIDGYIKCGNVEMAYKIFQAMP----EKNVISWTSMIVGFVRTGMHKEAL 228

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
              ++ML  G  P   T+S  L ACA    + +GK IH       ++ D  +  AL+DMY
Sbjct: 229 CLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMY 288

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
            KCG + +A  +F K+ ++   TW ++I G A HG   EA++ F QM++   K    +FT
Sbjct: 289 VKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFT 348

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVLTAC H GLVE G+ LF  M   Y + P  EHY CMVDLLGRAG L EA E +++M  
Sbjct: 349 AVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPI 408

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +P+  +WG+LL AC  H ++EL +   K L EL+PE     + L  ++A AG
Sbjct: 409 KPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAG 460



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 148/317 (46%), Gaps = 8/317 (2%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           II R F     A +  + +Y    +++S  +L   L     +R       +I  Y +C N
Sbjct: 137 IIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLP----SRDIVSWNTMIDGYIKCGN 192

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +  A  +F  +P+ N+  W ++   + R G H+EA+ +  +M + G+K +   +   L A
Sbjct: 193 VEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSA 252

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  L  +  G+ IH+ + K+    D  +  +LIDMY KCG ++KA  VF ++ +K +   
Sbjct: 253 CAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTW 312

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
            A++ G+   G  +EAL+   ++    +KP   T+  +++  S +G       LF+ M  
Sbjct: 313 TAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMST 372

Query: 309 -KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
              ++P +  +  ++  L       EA +  + M  +   P +A   S+L AC    ++ 
Sbjct: 373 FYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIK---PNAAIWGSLLNACHLHKHLE 429

Query: 368 RGKEIHGCAIVMGVEGD 384
            GKEI    I +  E D
Sbjct: 430 LGKEIGKFLIELDPEHD 446



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF--ISEARTLFDKMS 412
           S+L  C+   N+   K+IHG  +  G        S L+  YA   F  ++ AR +FD++S
Sbjct: 16  SLLERCS---NIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRIS 72

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV-GLVELGQ 470
             NTV WN+MI   +N    +EA+ L++QM       +  +F  +L AC  +  L E  Q
Sbjct: 73  SPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQ 132

Query: 471 RLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
               +++  +     +E YA   ++ +   +G +  A+ +   + +  D+  W  ++   
Sbjct: 133 IHVQIIKRGFG----SEVYATNSLLRVYAISGSIKSAHVLFDLLPSR-DIVSWNTMIDGY 187

Query: 529 KNHGNIELA 537
              GN+E+A
Sbjct: 188 IKCGNVEMA 196


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 281/545 (51%), Gaps = 81/545 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA-RMLFDEIPK--TNIHRWIAL 150
           LQ+     +Q  +S L +  QI   +I  +      HHA ++  ++ P   +   +W  +
Sbjct: 41  LQTPPTSPSQHDLSTLEQTKQIHAHIIKTH-----FHHALQIPLNDFPSGLSPSAQWNFV 95

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             +Y +R   + A+ V+ ++     + + F+ PSVLKACG +S    G++IH  VLK   
Sbjct: 96  ITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGL 155

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D FV ++L+ MY +C  VE A+ VFD+M+E+D+V+ + M+    +      AL L+ E
Sbjct: 156 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 215

Query: 271 IGTPRVKPN-------------------------------------VVTWNTLISGFSKS 293
           +   +V+P+                                     V T   L+  ++K 
Sbjct: 216 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 275

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN------------------------- 328
           G   +  +LF  +  K     VVSWT++I+G + +                         
Sbjct: 276 GHLGLARQLFNGLTQK----TVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAML 331

Query: 329 ------FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
                  C D+AF+ F +M + G  PT  TI S+L  CA A  +  GK +H       VE
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE 391

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            D  + +ALVDMYAKCG I+ A  LF +   R+   WN++I G A HGY +EA+++F +M
Sbjct: 392 VDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM 451

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           E +  K + ++F  +L AC H GLV  G++LF  M   + ++P+ EHY CMVDLLGRAG 
Sbjct: 452 ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGL 511

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L EA+EMIK+M  +P+  VWGAL+ AC+ H N +L E+AA  L E+EPE+   N+L++++
Sbjct: 512 LDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNI 571

Query: 562 YANAG 566
           YA A 
Sbjct: 572 YAAAN 576



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 135/282 (47%), Gaps = 5/282 (1%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           D   + G +  A+ + +GL + T ++ T +I        +  AR LFD     ++  W A
Sbjct: 270 DMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTA 329

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +  AYA+     +A  +F +M   G++     I S+L  C     +  G+ +HS + K  
Sbjct: 330 MLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 389

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D  + ++L+DMY+KCG +  A ++F E + +DI   NA+++G+   G   EAL++  
Sbjct: 390 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 449

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHN 328
           E+    VKPN +T+  L+   S +G      KLF+ M    G+ P +  +  ++  L   
Sbjct: 450 EMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRA 509

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
              DEA +  K M  +   P +    +++ AC    N + G+
Sbjct: 510 GLLDEAHEMIKSMPIK---PNTIVWGALVAACRLHKNPQLGE 548


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 172/508 (33%), Positives = 264/508 (51%), Gaps = 37/508 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL    + H   I SG       A  +I+ Y +C  I  A  +F E  + +   W  +  
Sbjct: 14  ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIA 73

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   G  + A+     M   G   + +   S+LK    +  +  G+++HS+++K  +  
Sbjct: 74  GFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEG 133

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ---RGLATEALNLVE 269
           + F  S+L+DMY+KC  VE A +VF  +  ++ V  NA++SGY Q   RG A   L+ +E
Sbjct: 134 NVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCME 193

Query: 270 EIG-----------------------TPRVKPNVV---------TWNTLISGFSKSGDQV 297
             G                       T +V   +V           N +I+ +S+ G   
Sbjct: 194 LEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIE 253

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F     +  + D VSW S+++G   +  +++A   F+ M SQ         S++L
Sbjct: 254 DAERVFD-GAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVL 312

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            +C+  A ++ G+++H   +  G E +  V S+L+ MY+KCG I +AR  FD   + +++
Sbjct: 313 RSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSI 372

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WNS+IFG A HG    A++LF  M++R+ KLDH++F AVLTAC H+GLVE G      M
Sbjct: 373 AWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSM 432

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +  Y I PR EHYACM+DLLGRAGRL EA  +I+ M  EPD  VW  LLGAC+  G+IEL
Sbjct: 433 ESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIEL 492

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYAN 564
           A   A HL ELEPE     +LL+ ++ +
Sbjct: 493 ASQVASHLLELEPEEHCTYVLLSSMFGH 520



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 3/174 (1%)

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +S   + R    H  AI  G    ++  + ++  YAKCG I  A  +F + S+R+ V+WN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI G  N G  + A+E    M+     +D  SF ++L     VG VE+GQ++ +MM  K
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMV-K 128

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
                     + ++D+  +  R+ +A+E+ K+++    +  W AL+      G+
Sbjct: 129 MGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSV-TWNALISGYAQVGD 181


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 180/510 (35%), Positives = 277/510 (54%), Gaps = 34/510 (6%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +RD +   GKI+H  LI  G       A  L+  Y +  ++  A  +F++I + +I  W 
Sbjct: 271 LRDSS--RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWN 328

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+        +H++A+ +  +M   G+  NIF + S LKAC  +     G ++HS ++K 
Sbjct: 329 AVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKM 388

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
              +D FV   L+DMYSKC  +E A+  F+ + EKD++A NA++SGY Q     EAL+L 
Sbjct: 389 DMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLF 448

Query: 269 EEIGTPRVKPNVVTWNTL---------------ISGFS-KSGDQVMVSKLFQLMRAKG-- 310
            E+    +  N  T +T+               + G S KSG    +  +  L+ + G  
Sbjct: 449 VEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC 508

Query: 311 --VEP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             VE            D+VS+TS+I+        +EA   F EM      P     SS+L
Sbjct: 509 SHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLL 568

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACA+ +   +GK++H   +  G   D+   ++LV+MYAKCG I +A   F +++ER  V
Sbjct: 569 NACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIV 628

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +W++MI G A HG+  +A++LFNQM +E    +H++  +VL AC H GLV   +  F  M
Sbjct: 629 SWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESM 688

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +E +   P  EHYACM+DLLGRAG++ EA E++  M  E +  VWGALLGA + H ++EL
Sbjct: 689 EELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVEL 748

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
              AA+ L  LEPE +  ++LL ++YA+AG
Sbjct: 749 GRRAAEMLFILEPEKSGTHVLLANIYASAG 778



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 150/527 (28%), Positives = 257/527 (48%), Gaps = 73/527 (13%)

Query: 73  SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           +F  +  +YS+ +      ++L+ G  +HA +  SGL+    I   LI  Y++C+N  +A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYA 110

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R L DE  + ++  W AL   YA+ G    A+  FHEMH+ G+K N F   SVLKAC  +
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
            D+  G+++H +V+   F  D FV ++L+ MY+KC     +K++FDE+ E+++V+ NA+ 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVT------------------------------ 282
           S YVQ     EA+ L  E+    +KPN  +                              
Sbjct: 231 SCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYD 290

Query: 283 W-----NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
           W     N L+  ++K GD      +F+ ++    +PD+VSW +VI+G V +  +++A + 
Sbjct: 291 WDPFSANALVDMYAKVGDLADAISVFEKIK----QPDIVSWNAVIAGCVLHEHHEQALEL 346

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
             +M   G CP   T+SS L ACA       G+++H   + M +E DL V   LVDMY+K
Sbjct: 347 LGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSK 406

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAV 456
           C  + +AR  F+ + E++ + WN++I G + +    EA+ LF +M +E    +  + + +
Sbjct: 407 CDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTI 466

Query: 457 LTACCHVGLVELGQR---------------LFNMMQEKYKIMPRTEH------------- 488
           L +   + +V + ++               + N + + Y      E              
Sbjct: 467 LKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDL 526

Query: 489 --YACMVDLLGRAGRLAEAYEM---IKTMSTEPDLFVWGALLGACKN 530
             +  M+    + G+  EA ++   ++ M  +PD FV  +LL AC N
Sbjct: 527 VSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACAN 573



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 18/239 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + GK LH  ++  G          L+  Y +C +I  A   F E+ +  I  W A+ G
Sbjct: 576 AFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIG 635

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+ G+ ++A+ +F++M  +G+  N   + SVL AC H + + T  K++   ++  FG 
Sbjct: 636 GLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNH-AGLVTEAKLYFESMEELFGF 694

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                  + +ID+  + G + +A     E+V K     NA V G +   L    ++   E
Sbjct: 695 KPMQEHYACMIDLLGRAGKINEAV----ELVNKMPFEANASVWGAL---LGAARIHKDVE 747

Query: 271 IGTPR------VKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           +G         ++P     + L++  ++ +G    V+++ +LMR   V+ +  +SW  V
Sbjct: 748 LGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEV 806


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 165/507 (32%), Positives = 265/507 (52%), Gaps = 73/507 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KTNIHRWIALT 151
           +Q G+++H  ++ +G      +   L+  Y +C++I  A +LF  +   K N   W A+ 
Sbjct: 228 IQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMV 287

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ G   +A+  F  MH +G++ N F  PS+L AC  +S    GE++H  ++++ FG
Sbjct: 288 TGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFG 347

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +A+V S+L+DMY+KCG +  AK+V + M + D+V+ N+M+ G V+ G   EA+ L +++
Sbjct: 348 CNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKM 407

Query: 272 GTPRVK------PNVVTW---------------------------NTLISGFSKSGDQVM 298
               +K      P+V+                             N L+  ++K+ D   
Sbjct: 408 HARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNC 467

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              +F+ M     E DV+SWTS+++G   N  ++E+  TF +M   G  P    ++SIL 
Sbjct: 468 AYAVFEKM----FEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILS 523

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA    +  GK++H   I +G+   L V ++LV MYAKCG + +A  +F  M  R+ +T
Sbjct: 524 ACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVIT 583

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           W ++I G A +G   ++++ F QM   KK+                              
Sbjct: 584 WTALIVGYARNGKGRDSLKYFQQM---KKI------------------------------ 610

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y I P  EHYACM+DL GR G+L EA E++  M  +PD  VW ALL AC+ HGN+EL E
Sbjct: 611 -YGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGE 669

Query: 539 IAAKHLSELEPESAANNMLLTDLYANA 565
            AA +L ELEP +A   ++L+++Y  A
Sbjct: 670 RAATNLFELEPMNAMPYVMLSNMYLAA 696



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 218/466 (46%), Gaps = 39/466 (8%)

Query: 95  QSGKILHA-QLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +SG+I  A +L    L R       +++ Y     +  AR LF+     +   W +L   
Sbjct: 127 KSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISG 186

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y R G   EA  +F  M ++G K + + + S+L+ C  L  I  GE IH  V+K+ F ++
Sbjct: 187 YCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESN 246

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +VV+ L+DMY+KC  + +A+ +F  +   + + V   AMV+GY Q G   +A+     +
Sbjct: 247 VYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYM 306

Query: 272 GTPRVKPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQL 305
            T  V+ N  T+ ++++  S       G+QV                     M +K   L
Sbjct: 307 HTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDL 366

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             AK V     + DVVSW S+I G V +   +EA   FK+M ++       T  S+L  C
Sbjct: 367 GSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCC 426

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
                   GK +H   I  G E    V +ALVDMYAK   ++ A  +F+KM E++ ++W 
Sbjct: 427 --IVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWT 484

Query: 421 SMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           S++ G   +G  +E+++ F  M       D     ++L+AC  + L+E G+++ +    K
Sbjct: 485 SLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFI-K 543

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
             +         +V +  + G L +A  +  +M    D+  W AL+
Sbjct: 544 LGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVR-DVITWTALI 588



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 160/322 (49%), Gaps = 46/322 (14%)

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           F  + L++  SK G ++ A+++FD+M+++D                              
Sbjct: 116 FHSNQLLNGLSKSGQIDDARELFDKMLQRD------------------------------ 145

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                  TWNT++SG++  G  V   +LF    ++      ++W+S+ISG        EA
Sbjct: 146 -----EYTWNTMVSGYANVGRLVEARELFNGFSSR----SSITWSSLISGYCRFGRQAEA 196

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
           FD FK M  +G  P+  T+ SIL  C++   +++G+ IHG  +  G E +++V + LVDM
Sbjct: 197 FDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDM 256

Query: 395 YAKCGFISEARTLFDKMS--ERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
           YAKC  ISEA  LF  ++  + N V W +M+ G A +G   +AIE F  M  E  + +  
Sbjct: 257 YAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQF 316

Query: 452 SFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           +F ++LTAC  V     G+++   +++  +      +  + +VD+  + G L  A  +++
Sbjct: 317 TFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQ--SALVDMYAKCGDLGSAKRVLE 374

Query: 511 TMSTEPDLFVWGALLGACKNHG 532
            M  + D+  W +++  C  HG
Sbjct: 375 NME-DDDVVSWNSMIVGCVRHG 395


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 261/497 (52%), Gaps = 36/497 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLIT-FYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           +HA +I  GL +   +    I+  +T    + +A  +F  +   +   W  L  ++ ++ 
Sbjct: 48  VHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKN 107

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
                ++ F  M   G   + F  PSV+KAC        G+ +H    +     D +V +
Sbjct: 108 LFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGT 167

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           SLIDMY KCG +  A+KVFD M ++++V+  AM+ GYV  G   EA  L +E+       
Sbjct: 168 SLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMP----HR 223

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--------------------------- 311
           NV +WN+++ GF K GD      +F  M  K V                           
Sbjct: 224 NVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSL 283

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           E DVV+W+++ISG V N   ++A   F EM      P    + S++ A A   ++   + 
Sbjct: 284 EKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQW 343

Query: 372 IHG--CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
           +      I + ++ D HV +AL+DM AKCG +  A  LFD+   R+ V + SMI G + H
Sbjct: 344 VDSYVSKICIDLQQD-HVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIH 402

Query: 430 GYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G  +EA+ LFN+M  E    D ++FT +LTAC   GLV+ G+  F  M++KY I P  +H
Sbjct: 403 GRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDH 462

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           YACMVDLL R+G + +AYE+IK +  EP    WGALLGACK +G+ EL EI A  L ELE
Sbjct: 463 YACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLYGDSELGEIVANRLFELE 522

Query: 549 PESAANNMLLTDLYANA 565
           P +AAN +LL+D+YA A
Sbjct: 523 PLNAANYVLLSDIYAAA 539



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 171/394 (43%), Gaps = 42/394 (10%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + GK LH      G+ +   + T LI  Y +C  I  AR +FD +   N+  W A+   Y
Sbjct: 145 REGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGY 204

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
              G   EA  +F EM      +N+    S+L+    + D+     +   + +     + 
Sbjct: 205 VAVGDVVEARKLFDEMP----HRNVASWNSMLQGFVKMGDLSGARGVFDAMPE----KNV 256

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
              +++ID Y+K G +  A+ +FD  +EKD+VA +A++SGYVQ GL  +AL +  E+   
Sbjct: 257 VSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELM 316

Query: 275 RVKPNVVTWNTLISGFSKSG---------------------DQVMVSKLFQLMRAKGVE- 312
            VKP+     +L+S  ++ G                     D V+ + L    +   +E 
Sbjct: 317 NVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMER 376

Query: 313 ----------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                      DVV + S+I GL  +   +EA + F  ML +G  P     + IL AC+ 
Sbjct: 377 ALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSR 436

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSA-LVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
           A  +  G+              L    A +VD+ ++ G I +A  L   +  E +   W 
Sbjct: 437 AGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWG 496

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT 454
           +++  C  +G  +    + N++ E + L+  ++ 
Sbjct: 497 ALLGACKLYGDSELGEIVANRLFELEPLNAANYV 530


>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group]
 gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group]
          Length = 721

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 175/483 (36%), Positives = 262/483 (54%), Gaps = 33/483 (6%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+ FY   + +  A+ LFD++P      W  L   +AR      AV  F  M   G+ 
Sbjct: 53  TALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVS 112

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
                + SVL AC  L D   G  +HS+ L H F     V ++L+DMY+KC  +  A++V
Sbjct: 113 PTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQV 172

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----- 291
           F EM EK++    A+V+G+V      +A+ LV E+    V PN++T+++L+S F+     
Sbjct: 173 FREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDI 232

Query: 292 -----------KSG---DQVMVSKLFQLMRAKGVE------------PDVVSWTSVISGL 325
                      K G   DQ ++S L  +    G+              D VS+ SVISGL
Sbjct: 233 DHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGL 292

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  EAF  F EM   G      T +S+L A  S++++  G+++H   + +G +  +
Sbjct: 293 SCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVV 352

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
            V+++L+ MYA+ G I E+  +F  M   N V+WNS++ GCA HG+  E +E+F QM   
Sbjct: 353 DVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRL 412

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK-YKIMPRTEHYACMVDLLGRAGRLA 503
             + DH++F +VLTAC HVGLV+ G   FN+M++K Y +  RTEHYACMVDLLGRAG L 
Sbjct: 413 HVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLN 472

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA  +I  M  +P   V+ ALL AC+ HGN+E+    +K L EL P  ++ ++ L++ +A
Sbjct: 473 EAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFA 532

Query: 564 NAG 566
             G
Sbjct: 533 GDG 535



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 170/399 (42%), Gaps = 42/399 (10%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R     +G  LH+  ++ G      + T L+  Y +C ++  A+ +F E+ + N+  + 
Sbjct: 126 VRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFT 185

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           AL   +       +A+ +  EM   G+  N+    S+L +     DI  G+++H  VLK 
Sbjct: 186 ALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKK 245

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               D FV+S+L+ MYSKCG +E   KV   +  +D V+ N+++SG    G   EA    
Sbjct: 246 GLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHF 305

Query: 269 EEIGTPRVKPNVVTW-----------------------------------NTLISGFSKS 293
            E+       +V T+                                   N+LIS +++ 
Sbjct: 306 LEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARH 365

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G     + +F  M A    P++VSW S++SG   +    E  + F++M      P   T 
Sbjct: 366 GAIGESNGVFISMEA----PNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITF 421

Query: 354 SSILPACASAANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
            S+L AC+    + +G E        G  V       + +VD+  + G+++EA  L + M
Sbjct: 422 LSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGM 481

Query: 412 S-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
             +     + +++  C  HG  +  I +  ++ E    D
Sbjct: 482 PIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHD 520



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 120/236 (50%), Gaps = 12/236 (5%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLF- 136
           YS  +  +     +  GK +H  ++  GL     + + L+T Y++C   +N    +M   
Sbjct: 219 YSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVS 278

Query: 137 --DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
             D++   ++   ++  G    RG  +EA   F EM   G   ++F   SVLKA G  S 
Sbjct: 279 CQDQVSFNSVISGLSCLG----RG--KEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSS 332

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G ++H+L+LK  + +   V +SLI MY++ G++ ++  VF  M   ++V+ N+++SG
Sbjct: 333 LLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSG 392

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
             Q G   E + + E++    V+P+ +T+ ++++  S  G      + F LM+ KG
Sbjct: 393 CAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 448



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +L   +AL+  Y +   + EA+ LFD+M  R  VTWN++I G A       A+  F +M 
Sbjct: 48  NLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMA 107

Query: 444 ERK-KLDHLSFTAVLTAC 460
                    S ++VL AC
Sbjct: 108 RAGVSPTASSVSSVLVAC 125


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 168/516 (32%), Positives = 271/516 (52%), Gaps = 51/516 (9%)

Query: 89  IRD-RALQSGKILHAQLIVSGLARLTQIATKLITFYTE--------CQNIHHARMLFDEI 139
           I+D + L+  + +HAQL+ SGL     + +K++ F+          C  +          
Sbjct: 12  IKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSF 71

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P        +L   Y    + Q AV+V+  M   G   ++F  P +LKAC + S    G 
Sbjct: 72  PFN------SLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGR 125

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H +V+K     D +V +SLI  Y  CG    A KVFDEM+ +D+V+ N+++SG+++ G
Sbjct: 126 QVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAG 185

Query: 260 LATEALNL-------------------------------VEEIGTPRVKPNVVTWNTLIS 288
              EA+++                               +  +   R K N+V  N ++ 
Sbjct: 186 HFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLD 245

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
            + K+G       +F  +  +    D+VSWT +I+GLV +    ++ + F  M + G  P
Sbjct: 246 MYVKNGCFYEAKNIFDELPTR----DIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISP 301

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
            +  ++S+L ACAS   +  G  +H      G++ D+H+ +A+VDMYAKCG I  A  +F
Sbjct: 302 DAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIF 361

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVE 467
             MS+RNT TWN+++ G A HG   EA+ LF  M     K + ++F A+LTACCH GLV+
Sbjct: 362 YSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVD 421

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            G++ F+ M + Y ++P+ EHY CM+DL  RAG L EA E+ +TM  +PD+ +WG LL A
Sbjct: 422 EGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNA 481

Query: 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           C   GNIEL+     ++ EL+ + +   +LL+++ A
Sbjct: 482 CTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISA 517


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 245/439 (55%), Gaps = 10/439 (2%)

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF-HEMHIQGLKQNIFVIPSV 185
            ++H+    F ++   N+  + A+   +   GY   A+  + H +    +    +   S+
Sbjct: 182 NSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSL 241

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           +KAC  +  +  G+ +H  + K  F +  FV ++L+D YSK   + +A+KVFDEM E+D 
Sbjct: 242 VKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDA 301

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
            A  AMVS   + G    A  L EE+     + N  TWNT+I G+++ G+      LF  
Sbjct: 302 FAWTAMVSALARVGDMDSARKLFEEMP----ERNTATWNTMIDGYARLGNVESAELLFNQ 357

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  K    D++SWT++I+    N    +A   + EM   G  P   T+S++  ACA    
Sbjct: 358 MPTK----DIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGA 413

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GKEIH   +  G+  D+++ SALVDMYAKCG +  +  +F K++++N   WN++I G
Sbjct: 414 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 473

Query: 426 CANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HGY ++A+ +F  ME  K + + ++F ++L+AC H GLV+ G+  F  M   Y I P
Sbjct: 474 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 533

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
              HY CMVD+L ++G L EA E+IK+M  EP+  +WGALL  CK HGN E+AE A + L
Sbjct: 534 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL 593

Query: 545 SELEPESAANNMLLTDLYA 563
             LEP ++ +  LL  +YA
Sbjct: 594 MILEPMNSGHYNLLVSMYA 612



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 144/289 (49%), Gaps = 7/289 (2%)

Query: 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
           R T     +I  Y    N+  A +LF+++P  +I  W  +   Y++   +Q+A+ ++ EM
Sbjct: 330 RNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEM 389

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
            + G+  +   + +V  AC H+  +  G++IH  V+      D ++ S+L+DMY+KCGS+
Sbjct: 390 RLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSL 449

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           + +  +F ++ +K++   NA++ G    G A +AL +   +   ++ PN VT+ +++S  
Sbjct: 450 DLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSAC 509

Query: 291 SKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
           + +G  D+   S+   + R   + PD+  +  ++  L  +   +EA +  K M    F P
Sbjct: 510 THAGLVDEGR-SRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSM---EFEP 565

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            S    ++L  C    N    ++     +++      H  + LV MYA+
Sbjct: 566 NSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHY-NLLVSMYAE 613



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 160/384 (41%), Gaps = 74/384 (19%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G+++H  +   G      + T L+ FY++ + +  AR +FDE+ + +   W A+  
Sbjct: 250 AVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVS 309

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A AR G    A  +F EM  +                                       
Sbjct: 310 ALARVGDMDSARKLFEEMPER--------------------------------------- 330

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +    +++ID Y++ G+VE A+ +F++M  KDI++   M++ Y Q     +AL +  E+ 
Sbjct: 331 NTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMR 390

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV----------------- 315
              + P+ VT +T+ S  +  G   +  ++   + ++G+  DV                 
Sbjct: 391 LNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLD 450

Query: 316 --------------VSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                           W +VI GL VH +  ++A   F  M  +   P   T  SIL AC
Sbjct: 451 LSLLIFFKLTDKNLYCWNAVIEGLAVHGYA-EKALRMFAIMEREKIMPNGVTFISILSAC 509

Query: 361 ASAANMRRGK-EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
             A  +  G+           +  D+     +VDM +K G+++EA  L   M  E N++ 
Sbjct: 510 THAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSII 569

Query: 419 WNSMIFGCANHGYCDEAIELFNQM 442
           W +++ GC  HG C+ A +   Q+
Sbjct: 570 WGALLNGCKLHGNCEIAEDAVEQL 593



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 117/242 (48%), Gaps = 8/242 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H  ++  GL     I + L+  Y +C ++  + ++F ++   N++ W A+  
Sbjct: 413 ALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIE 472

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSFG 211
             A  GY ++A+ +F  M  + +  N     S+L AC H   +  G  +  S+   +   
Sbjct: 473 GLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIR 532

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            D      ++DM SK G + +A ++   M  E + +   A+++G    G    A + VE+
Sbjct: 533 PDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQ 592

Query: 271 IGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV--VSWTSVISGLVH 327
           +    ++P N   +N L+S +++  D + V+ +  +M+ KGVE      SW   + G +H
Sbjct: 593 LMI--LEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIE-LEGTIH 649

Query: 328 NF 329
            F
Sbjct: 650 QF 651



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 164/373 (43%), Gaps = 26/373 (6%)

Query: 192 LSDIGTGEKIHSL---VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           + +  T  ++H L   ++K +   D F+V   I       SV      F +M   ++   
Sbjct: 143 IKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVY 202

Query: 249 NAMVSGYVQRGLATEALN-LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
           NAM+ G+V  G    AL   V  +    V P   T+++L+    K+   +   +L Q++ 
Sbjct: 203 NAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLV----KACTFMCAVELGQMVH 258

Query: 308 A----KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                KG E  +   T+++          EA   F EM  +     +A +S    A A  
Sbjct: 259 CHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVS----ALARV 314

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            +M   +++         E +    + ++D YA+ G +  A  LF++M  ++ ++W +MI
Sbjct: 315 GDMDSARKL----FEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMI 370

Query: 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              + +    +A+ ++++M     + D ++ + V +AC H+G +ELG+ + + +  +  +
Sbjct: 371 TCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQ-GL 429

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
                  + +VD+  + G L  +  +I    T+ +L+ W A++     HG    AE A +
Sbjct: 430 NLDVYIGSALVDMYAKCGSLDLSL-LIFFKLTDKNLYCWNAVIEGLAVHG---YAEKALR 485

Query: 543 HLSELEPESAANN 555
             + +E E    N
Sbjct: 486 MFAIMEREKIMPN 498


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 165/498 (33%), Positives = 270/498 (54%), Gaps = 41/498 (8%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S+   L    Y+  +    R  +L+ GK LHAQ+I +       +A+ L+  Y +C    
Sbjct: 263 SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFK 322

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            A+ +F+ +   N   W  L   + + G   E+V +F++M  + +  + F + +++  C 
Sbjct: 323 EAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCC 382

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
              D+  G ++HSL LK        V +SLI MY+KC +++ A+ +F  M EKDIV+  +
Sbjct: 383 SRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTS 442

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA-K 309
           M++ + Q G   +A    + + T     NV+TWN ++  + + G +    +++ +M + K
Sbjct: 443 MITAHSQVGNIAKAREFFDGMSTK----NVITWNAMLGAYIQHGAEEDGLRMYNVMLSEK 498

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
            V PD V++ ++  G                                   CA     + G
Sbjct: 499 DVRPDWVTYVTLFKG-----------------------------------CADLGANKLG 523

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
            +I G  + +G+  D  V +A++ MY+KCG I EAR +FD ++ ++ V+WN+MI G + H
Sbjct: 524 DQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQH 583

Query: 430 GYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G   +AIE+F+ + +R  K D++S+ AVL+ C H GLV+ G+  F+MM+  + I P  EH
Sbjct: 584 GMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEH 643

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           ++CMVDLLGRAG L EA ++I  M  +P   VWGALL ACK HGN ELAE+AAKH+ EL+
Sbjct: 644 FSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELD 703

Query: 549 PESAANNMLLTDLYANAG 566
              + + ML+  +YA+AG
Sbjct: 704 SPDSGSYMLMAKIYADAG 721



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 212/481 (44%), Gaps = 84/481 (17%)

Query: 99  ILHAQLIVSGL--AR---LTQIA-------TKLITFYTECQNIHHARMLFDEIPKTNIHR 146
           +LHA L    L  AR   LT IA         ++  Y +   +  A  LF  +P  ++  
Sbjct: 45  LLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVAS 104

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQ-NIFVIPSVLKACGHLSDIGTGEKIHSLV 205
           W  L   Y +   +  ++  F  MH  G    N F     +K+CG L +     ++  +V
Sbjct: 105 WNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMV 164

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            K     D+ V ++L+DM+ +CG+V+ A ++F  + E  I   N+M+ GYV+      AL
Sbjct: 165 QKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHAL 224

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L + +     + +VV+WN ++S  S+SG       +   M++KGV  D           
Sbjct: 225 ELFDSMP----ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLD----------- 269

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                                   S T +S L ACA  +++R GK++H   I      D 
Sbjct: 270 ------------------------STTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-E 444
           +V SALV++YAKCG   EA+ +F+ + +RN V W  +I G   HG   E++ELFNQM  E
Sbjct: 306 YVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE 365

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNM----------------------------M 476
              LD  +   +++ CC    + LG++L ++                             
Sbjct: 366 LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSA 425

Query: 477 QEKYKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
           +  ++ M   +   +  M+    + G +A+A E    MST+ ++  W A+LGA   HG  
Sbjct: 426 ESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTK-NVITWNAMLGAYIQHGAE 484

Query: 535 E 535
           E
Sbjct: 485 E 485



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 138/319 (43%), Gaps = 46/319 (14%)

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           N ++  Y+  G   +A  L+    T    PNV+T N +++G+ K G      +LF  M A
Sbjct: 43  NTLLHAYLSCGALPDARRLLL---TDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPA 99

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPACASAANMR 367
           +    DV SW +++SG   +     + ++F  M   G   P + T +  + +C +     
Sbjct: 100 R----DVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERS 155

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF--------------------------- 400
              ++ G     G + D  V +ALVDM+ +CG                            
Sbjct: 156 LALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYV 215

Query: 401 ----ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTA 455
               +  A  LFD M ER+ V+WN M+   +  G   EA+++   M+ +  +LD  ++T+
Sbjct: 216 KTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTS 275

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMS 513
            LTAC  +  +  G++L     +  + +P  + Y  + +V+L  + G   EA  +  ++ 
Sbjct: 276 SLTACARLSSLRWGKQLH---AQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLH 332

Query: 514 TEPDLFVWGALLGACKNHG 532
              ++  W  L+     HG
Sbjct: 333 DRNNV-AWTVLIAGFLQHG 350



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 11/232 (4%)

Query: 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           GL   T +A  +IT Y++C  I  AR +FD +   +I  W A+   Y++ G  ++A+ +F
Sbjct: 534 GLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF 593

Query: 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSK 226
            ++  +G K +     +VL  C H   +  G+    ++ + H+        S ++D+  +
Sbjct: 594 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGR 653

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV----KPNVVT 282
            G + +AK + DEM  K      A V G +         N + E+    V     P+  +
Sbjct: 654 AGHLTEAKDLIDEMPMKP----TAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGS 709

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCNDE 333
           +  +   ++ +G     +++ +LMR KG++ +   SW  V +  VH F  D+
Sbjct: 710 YMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV-NNKVHVFKADD 760



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 37/211 (17%)

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART-LFDKMSERN 415
           L +C +   +   + +HG  + +G+   + +++ L+  Y  CG + +AR  L   ++  N
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPN 70

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEER------------------------------ 445
            +T N M+ G    G   +A+ELF +M  R                              
Sbjct: 71  VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHR 130

Query: 446 ---KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
                 +  +F   + +C  +G   L  +L  M+Q K+     ++  A +VD+  R G +
Sbjct: 131 SGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQ-KFGSQDDSDVAAALVDMFVRCGTV 189

Query: 503 AEAYEMIKTMSTEPDLFVWGALL-GACKNHG 532
             A  +   +  EP +F   ++L G  K +G
Sbjct: 190 DLASRLFVRIK-EPTIFCRNSMLVGYVKTYG 219


>gi|413941673|gb|AFW74322.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
          Length = 1028

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 251/453 (55%), Gaps = 5/453 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           L++ Y     +  A  + +++ ++    ++  W +L   +       EA+  F  M + G
Sbjct: 276 LVSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAG 335

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++ N   I S + AC  L  +  G ++H   +K     +    +SL+DMY+KCG +  AK
Sbjct: 336 VEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAK 395

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           +VFDE+ EKDI + N+MV+GY Q G   +A  L  E+ +  V+ NV+TWN +ISG+ ++G
Sbjct: 396 RVFDEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNG 455

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           D     +LFQ+M + GV+ D  SW ++I+G VHN  +D A   F +M S    P   TI 
Sbjct: 456 DDERAFELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDFITIL 515

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           SI+PA A+ A   + +EIH C     +E D  + +AL++ Y+K G ++ A  +FD+ S R
Sbjct: 516 SIIPAFANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGDLAGACAVFDRHSSR 575

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           N ++WN +I     HG   EA++ F +M +E  + DH + TAV+ A    G V   +R+F
Sbjct: 576 NIISWNCIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKRIF 635

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + M   Y I+P  +HY  +VDLLGR+G L EAYE I  M   P+L VW ALL A   HGN
Sbjct: 636 HNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGNMPLIPNLAVWEALLTAATIHGN 695

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             LA + A+ LS L+P       L+ + +   G
Sbjct: 696 ARLANLTARELSSLDPSDPRIQRLVFNYWGLTG 728



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 212/372 (56%), Gaps = 5/372 (1%)

Query: 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
           RL    TKLIT ++    +  AR +F+ +   ++  W A+ GAYA RG ++E V +   M
Sbjct: 97  RLIVSETKLITVHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYEEVVALAVAM 156

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF----GTDAFVVSSLIDMYSK 226
             +G+  + F+I  +L+AC +  D+  G  +HSL ++  F      D  V +S++ MY K
Sbjct: 157 VREGVIPDRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVK 216

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
           CG + +A+  FD M ++D+   N+M+ G  +     EA  L++++     +P +VTWNTL
Sbjct: 217 CGELGRARAAFDMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTL 276

Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           +S +++SG+  +  ++ + M   GV PDVV+WTS++SG VH     EA   F  M   G 
Sbjct: 277 VSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGV 336

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P   TI+S + ACAS   + +G E+H  AI +G   ++   ++LVDMYAKCG I  A+ 
Sbjct: 337 EPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKR 396

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +FD++ E++  +WNSM+ G A  GYC +A ELF +ME    + + +++  +++     G 
Sbjct: 397 VFDEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNGD 456

Query: 466 VELGQRLFNMMQ 477
            E    LF MM+
Sbjct: 457 DERAFELFQMME 468



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 151/376 (40%), Gaps = 72/376 (19%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L  G  LH   I  G          L+  Y +C  I  A+ +FDEIP+ +I  W ++ 
Sbjct: 354 RLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEIPEKDIFSWNSMV 413

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ GY  +A  +F EM   G+++N  VI   +   G++ + G  E+           
Sbjct: 414 AGYAQAGYCGKAYELFCEMESLGVRRN--VITWNIMISGYIRN-GDDER----------- 459

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             AF    L  M   CG            V++D  + NA+++G V  G +  AL +  ++
Sbjct: 460 --AF---ELFQMMESCG------------VKRDTASWNALIAGSVHNGHSDRALRIFWQM 502

Query: 272 GTPRVKPNVVT--------------W---------------------NTLISGFSKSGDQ 296
            +  V+P+ +T              W                     N LI+ +SKSGD 
Sbjct: 503 QSLLVRPDFITILSIIPAFANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGDL 562

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +F    ++    +++SW  +I   + +    EA D F EM  +G  P   T++++
Sbjct: 563 AGACAVFDRHSSR----NIISWNCIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAV 618

Query: 357 LPACASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-R 414
           + A      +   K I H       +  DL   +A+VD+  + G + EA      M    
Sbjct: 619 IKAYGLQGKVSEAKRIFHNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGNMPLIP 678

Query: 415 NTVTWNSMIFGCANHG 430
           N   W +++     HG
Sbjct: 679 NLAVWEALLTAATIHG 694


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 269/490 (54%), Gaps = 25/490 (5%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARM 134
           SP   +  + ++   +++   K +H++ I +G+     I  K+++F    E  ++ +AR 
Sbjct: 10  SPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQ 69

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           LFD IP+ ++  W  +   Y+R    +  V+++ EM  + +K + +  P + K       
Sbjct: 70  LFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVA 129

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G ++H  V+K+   ++ F  ++LI+MYS CG ++ A+ +FD   + D+V  NAM+SG
Sbjct: 130 LQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISG 189

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
           Y                   R+K +V++W  +++GF  +G      K F  M     E D
Sbjct: 190 Y------------------NRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMP----ERD 227

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
            VSWT++I G +   C  EA   F+EM +    P   T+ S+L ACA    +  G+ I  
Sbjct: 228 HVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRT 287

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
                 V+ D  V +AL+DMY KCG +  A ++F+ + +R+  TW +M+ G A +G  +E
Sbjct: 288 YIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEE 347

Query: 435 AIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A+ +F+QM +     D +++  VL+AC H G+V+ G++ F  M  ++ I P   HY CMV
Sbjct: 348 ALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMV 407

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           DLLG+AG L EA+E+IK M  +P+  VWGALLGAC+ H + E+AE A + + ELEP + A
Sbjct: 408 DLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGA 467

Query: 554 NNMLLTDLYA 563
             +L  ++YA
Sbjct: 468 VYVLQCNIYA 477


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 170/507 (33%), Positives = 266/507 (52%), Gaps = 33/507 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R  + G+ +H + + +G      +   L++ Y  C+++  A  +F  +       W  + 
Sbjct: 122 RRRRHGRAVHGRALTAGFGGDGYVQNALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTVI 181

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
               + G  + A+ VF  M  +G+  +   + SVL AC    D+  G  +H L +    G
Sbjct: 182 TGCVKDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLG 241

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDE-MVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             A V ++LIDMY KC S+E AK+VFDE   +KD+V+  AM+  YV    A++A  L  E
Sbjct: 242 NYAAVKNALIDMYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSE 301

Query: 271 -IGTPRVKPNVVTWNTLISGFSK--SGDQVMVSKLFQLMRAKG----VEPDVV------- 316
            + T   +PN VT   L+S  +   SG     +    +    G    VE  +V       
Sbjct: 302 MLVTSEAQPNAVTMVHLLSACTSLLSGKHAKCTHALCIRLGLGSDTVVETALVDCYAKCG 361

Query: 317 -----------------SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                            +W + ISG  H     +A   FK+ML++   P SAT++S++PA
Sbjct: 362 YMGMIDMVVEKGSRRTETWNAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPA 421

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            A +A++ + K IH C ++ G  G   + + L+++YAK G +  A  LF  + E++ V W
Sbjct: 422 YAESADLVQAKNIHCCLLIRGCLGSTDIATGLINVYAKAGDLGVAWELFQCLPEKDVVAW 481

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            ++I G   HG+   AI L+++M E     + ++  +++ +C H G+V+ G RLFN M+ 
Sbjct: 482 TTVIAGYGMHGHAQTAILLYSRMIEMGVTPNTVTMASLMYSCSHAGMVDEGLRLFNDMRG 541

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + +MP  EHY C+VD+LGRAGR+ EAY +I+ M  EP   VW ALLGAC  H N+E  E
Sbjct: 542 VHGLMPNAEHYLCLVDMLGRAGRIEEAYRLIQDMPFEPSTSVWSALLGACVLHENVEFGE 601

Query: 539 IAAKHLSELEPESAANNMLLTDLYANA 565
           +AAKHL ELEP++  N +LL  +YA A
Sbjct: 602 VAAKHLFELEPDNVGNYVLLGKVYAAA 628



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 207/473 (43%), Gaps = 42/473 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN-IHRWIALTGAYARRG 158
           LHA L+ SG          L+  Y  C     A  L  ++P+   +     L  +Y   G
Sbjct: 32  LHALLLKSGHLLHCDSIHLLLGSYCACGRPFDAHNLLVQMPQPPPVSVSNTLLRSYTGLG 91

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
           ++++A+ ++ +M  +      F   +  KAC  L     G  +H   L   FG D +V +
Sbjct: 92  FNRQALALYSQM--RAFDHLTFTFAA--KACADLRRRRHGRAVHGRALTAGFGGDGYVQN 147

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +L+ MY +C  V  A+ VF  +  +  V+ N +++G V+ G A  AL + E +    V  
Sbjct: 148 ALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTVITGCVKDGRAERALEVFETMVGRGVCI 207

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--------------------------- 311
           +  T  +++   +++ D  M   + +L   +G+                           
Sbjct: 208 DRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDAKRVF 267

Query: 312 -----EPDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAAN 365
                + DVVSWT++I   V N    +AF    EML +    P + T+  +L AC S  +
Sbjct: 268 DEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSACTSLLS 327

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
            +  K  H   I +G+  D  V +ALVD YAKCG++     + +K S R T TWN+ I G
Sbjct: 328 GKHAKCTHALCIRLGLGSDTVVETALVDCYAKCGYMGMIDMVVEKGSRR-TETWNAAISG 386

Query: 426 CANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
             +     +A+ LF QM  E  + D  +  +V+ A      +   + +   +  +   + 
Sbjct: 387 YTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAESADLVQAKNIHCCLLIR-GCLG 445

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            T+    ++++  +AG L  A+E+ + +  E D+  W  ++     HG+ + A
Sbjct: 446 STDIATGLINVYAKAGDLGVAWELFQCLP-EKDVVAWTTVIAGYGMHGHAQTA 497



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 137/299 (45%), Gaps = 39/299 (13%)

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM-NAMVSGY 255
           T  ++H+L+LK         +  L+  Y  CG    A  +  +M +   V++ N ++  Y
Sbjct: 28  TAAQLHALLLKSGHLLHCDSIHLLLGSYCACGRPFDAHNLLVQMPQPPPVSVSNTLLRSY 87

Query: 256 VQRGLATEALNLVEEIGT-----------------PRVKPNVVTWNTLISGFSKSG---- 294
              G   +AL L  ++                    R     V    L +GF   G    
Sbjct: 88  TGLGFNRQALALYSQMRAFDHLTFTFAAKACADLRRRRHGRAVHGRALTAGFGGDGYVQN 147

Query: 295 ----------DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
                     D V    +F  +R++      VSW +VI+G V +   + A + F+ M+ +
Sbjct: 148 ALVSMYMRCRDVVSAEAVFGALRSR----TTVSWNTVITGCVKDGRAERALEVFETMVGR 203

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           G C   AT+ S+LPACA A ++  G+ +H  A+V G+     V++AL+DMY KC  + +A
Sbjct: 204 GVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDA 263

Query: 405 RTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTAC 460
           + +FD+ S +++ V+W +MI     + +  +A  L ++M      + + ++   +L+AC
Sbjct: 264 KRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSAC 322


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 166/484 (34%), Positives = 268/484 (55%), Gaps = 32/484 (6%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + + L+ FY +   +  AR LFD +P+ N+  W  +   YA +   +EA+ VF  M +  
Sbjct: 149 VGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVE 208

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
              N FV  SVL A      + +G+++H +V+K+       V+++L+ MY+KCG++  + 
Sbjct: 209 GNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSL 268

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--- 291
            +F+   +K+ +  +A+++GY Q G + +AL L  ++      P+  T   ++   S   
Sbjct: 269 MLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVA 328

Query: 292 -------------KSG--DQVMVSKLFQLMRAKG-------------VEPDVVSWTSVIS 323
                        KSG   Q+  +     M AK              +EPD+V WTS+I+
Sbjct: 329 AIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIA 388

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G V N  N+EA   +  M  +   P   T++S+L AC++ A + +GK+IH   I  G+  
Sbjct: 389 GYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGP 448

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +L +RSAL  MYAKCG + E   +F +M +R+ V+WN+MI G + +G+  EA+ELF +M 
Sbjct: 449 ELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMR 508

Query: 444 -ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
            E  K DH++F  VL+AC H+G+V+ G   FNMM +++ ++PR EHYACMVD+L RAG+L
Sbjct: 509 LEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKL 568

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            EA E I++   +  + +W  LL AC+NH N EL   A + L EL    ++  +LL+ +Y
Sbjct: 569 NEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIY 628

Query: 563 ANAG 566
              G
Sbjct: 629 TAMG 632



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 248/506 (49%), Gaps = 53/506 (10%)

Query: 68  PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLI-VSGLARLTQIATKLITFYTEC 126
           P  +RSF      Y+  I+ Y   ++L+ G+ILHA +I +  L+    +A  LI FY +C
Sbjct: 4   PPQNRSF------YNLLIQ-YADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKC 56

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQE--AVTVFHEMHIQGLKQNIFVIPS 184
            ++H A+++F+ +   N+  +  L    +  G       + +F  M    +  +    P 
Sbjct: 57  GHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPG 116

Query: 185 VLKACG-HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           V  A   +L       ++H L +K +   D FV SSL++ Y K G V +A+K+FD M E+
Sbjct: 117 VFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPER 176

Query: 244 DIVAMNAMVSGYVQRGLATEAL-----------NLVEEIGT--------PR--------- 275
           ++V+   M+SGY  + +A EAL           NL E + T        P          
Sbjct: 177 NLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVH 236

Query: 276 ---VKPNVVTW----NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
              VK  V+ +    N L++ ++K G+      LF++   K    + ++W+++I+G    
Sbjct: 237 CVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDK----NAITWSALITGYSQA 292

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
             + +A   F +M   GF P+  T+  +L AC+  A +  GK+ HG  +  G E  ++  
Sbjct: 293 GDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTA 352

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           +ALVDMYAK GF  +AR  FD + E + V W S+I G   +G  +EA+ ++ +M+ RK L
Sbjct: 353 TALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKIL 412

Query: 449 -DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            + L+  +VL AC ++  +E G+++ +    KY + P     + +  +  + G L E   
Sbjct: 413 PNELTMASVLKACSNLAALEQGKQI-HARTIKYGLGPELSIRSALSTMYAKCGSLEEGVL 471

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGN 533
           + + M  + D+  W A++     +G+
Sbjct: 472 IFRRM-LQRDIVSWNAMISGLSQNGH 496



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 181/372 (48%), Gaps = 39/372 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           + SGK +H  ++ +G+     +   L+T Y +C N++++ MLF+     N   W AL   
Sbjct: 229 VDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITG 288

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y++ G   +A+ +F +MH  G   + F +  VLKAC  ++ I  G++ H  +LK  + T 
Sbjct: 289 YSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQ 348

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +  ++L+DMY+K G    A+K FD ++E D+V   ++++GYVQ G   EAL++   +  
Sbjct: 349 IYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQM 408

Query: 274 PRVKPNVVTWNTLISGFSK------------------SGDQVMVSKLFQLMRAK------ 309
            ++ PN +T  +++   S                    G ++ +      M AK      
Sbjct: 409 RKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEE 468

Query: 310 GV-------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           GV       + D+VSW ++ISGL  N    EA + F+EM  +G  P   T  ++L AC+ 
Sbjct: 469 GVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSH 528

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVR----SALVDMYAKCGFISEARTLFDK-MSERNTV 417
              ++RG        +M  E  L  R    + +VD+ ++ G ++EA+   +  + +    
Sbjct: 529 MGIVKRGWAYFN---MMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMC 585

Query: 418 TWNSMIFGCANH 429
            W  ++  C NH
Sbjct: 586 LWRILLPACRNH 597



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 144/279 (51%), Gaps = 6/279 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ GK  H  L+ SG       AT L+  Y +      AR  FD + + ++  W ++  
Sbjct: 329 AIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIA 388

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G ++EA++++  M ++ +  N   + SVLKAC +L+ +  G++IH+  +K+  G 
Sbjct: 389 GYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGP 448

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  + S+L  MY+KCGS+E+   +F  M+++DIV+ NAM+SG  Q G   EAL L EE+ 
Sbjct: 449 ELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMR 508

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
               KP+ +T+ T++S  S  G        F +M  +  + P V  +  ++  L      
Sbjct: 509 LEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKL 568

Query: 332 DEAFDTFKE-MLSQGFCPTSATISSILPACASAANMRRG 369
           +EA +  +  ++  G C        +LPAC +  N   G
Sbjct: 569 NEAKEFIESAIIDHGMC----LWRILLPACRNHCNYELG 603



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 172/382 (45%), Gaps = 50/382 (13%)

Query: 198 GEKIHSLVLKHSFGTDA-FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
           G+ +H+ ++K  + +   ++ ++LI  Y+KCG +  AK VF+ +  K++V+ N ++ G  
Sbjct: 26  GQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLS 85

Query: 257 QRG-----------------------------LATEALNL----------VEEIGTPRVK 277
             G                                 ALNL          V  I T  + 
Sbjct: 86  HNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASID 145

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
            +V   ++L++ + K G      KLF  M     E ++VSWT++ISG        EA   
Sbjct: 146 -DVFVGSSLVNFYCKVGCVFEARKLFDRMP----ERNLVSWTTMISGYASKQMAKEALGV 200

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F  M            +S+L A      +  GK++H   +  GV   + V +ALV MYAK
Sbjct: 201 FGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAK 260

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAV 456
           CG ++ +  LF+  S++N +TW+++I G +  G   +A++LF++M     +    +   V
Sbjct: 261 CGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGV 320

Query: 457 LTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           L AC  V  +E G++    +++  Y+    T     +VD+  + G   +A +    +  E
Sbjct: 321 LKACSDVAAIEEGKQTHGYLLKSGYETQIYTA--TALVDMYAKFGFTGDARKGFDFL-LE 377

Query: 516 PDLFVWGALLGACKNHGNIELA 537
           PDL +W +++     +G  E A
Sbjct: 378 PDLVLWTSIIAGYVQNGKNEEA 399


>gi|413941674|gb|AFW74323.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
          Length = 876

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 251/453 (55%), Gaps = 5/453 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           L++ Y     +  A  + +++ ++    ++  W +L   +       EA+  F  M + G
Sbjct: 276 LVSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAG 335

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++ N   I S + AC  L  +  G ++H   +K     +    +SL+DMY+KCG +  AK
Sbjct: 336 VEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAK 395

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           +VFDE+ EKDI + N+MV+GY Q G   +A  L  E+ +  V+ NV+TWN +ISG+ ++G
Sbjct: 396 RVFDEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNG 455

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           D     +LFQ+M + GV+ D  SW ++I+G VHN  +D A   F +M S    P   TI 
Sbjct: 456 DDERAFELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDFITIL 515

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           SI+PA A+ A   + +EIH C     +E D  + +AL++ Y+K G ++ A  +FD+ S R
Sbjct: 516 SIIPAFANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGDLAGACAVFDRHSSR 575

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           N ++WN +I     HG   EA++ F +M +E  + DH + TAV+ A    G V   +R+F
Sbjct: 576 NIISWNCIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKRIF 635

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + M   Y I+P  +HY  +VDLLGR+G L EAYE I  M   P+L VW ALL A   HGN
Sbjct: 636 HNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGNMPLIPNLAVWEALLTAATIHGN 695

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             LA + A+ LS L+P       L+ + +   G
Sbjct: 696 ARLANLTARELSSLDPSDPRIQRLVFNYWGLTG 728



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 212/372 (56%), Gaps = 5/372 (1%)

Query: 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
           RL    TKLIT ++    +  AR +F+ +   ++  W A+ GAYA RG ++E V +   M
Sbjct: 97  RLIVSETKLITVHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYEEVVALAVAM 156

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF----GTDAFVVSSLIDMYSK 226
             +G+  + F+I  +L+AC +  D+  G  +HSL ++  F      D  V +S++ MY K
Sbjct: 157 VREGVIPDRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVK 216

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
           CG + +A+  FD M ++D+   N+M+ G  +     EA  L++++     +P +VTWNTL
Sbjct: 217 CGELGRARAAFDMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTL 276

Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           +S +++SG+  +  ++ + M   GV PDVV+WTS++SG VH     EA   F  M   G 
Sbjct: 277 VSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGV 336

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P   TI+S + ACAS   + +G E+H  AI +G   ++   ++LVDMYAKCG I  A+ 
Sbjct: 337 EPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKR 396

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +FD++ E++  +WNSM+ G A  GYC +A ELF +ME    + + +++  +++     G 
Sbjct: 397 VFDEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNGD 456

Query: 466 VELGQRLFNMMQ 477
            E    LF MM+
Sbjct: 457 DERAFELFQMME 468



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 149/380 (39%), Gaps = 80/380 (21%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L  G  LH   I  G          L+  Y +C  I  A+ +FDEIP+ +I  W ++ 
Sbjct: 354 RLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEIPEKDIFSWNSMV 413

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ GY  +A  +F EM   G+++N+                                
Sbjct: 414 AGYAQAGYCGKAYELFCEMESLGVRRNVITW----------------------------- 444

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNL 267
                 + +I  Y + G  E+A ++F  M    V++D  + NA+++G V  G +  AL +
Sbjct: 445 ------NIMISGYIRNGDDERAFELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRI 498

Query: 268 VEEIGTPRVKPNVVT--------------W---------------------NTLISGFSK 292
             ++ +  V+P+ +T              W                     N LI+ +SK
Sbjct: 499 FWQMQSLLVRPDFITILSIIPAFANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSK 558

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           SGD      +F    ++    +++SW  +I   + +    EA D F EM  +G  P   T
Sbjct: 559 SGDLAGACAVFDRHSSR----NIISWNCIILAHLLHGSPSEALDRFCEMKQEGVRPDHTT 614

Query: 353 ISSILPACASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           +++++ A      +   K I H       +  DL   +A+VD+  + G + EA      M
Sbjct: 615 LTAVIKAYGLQGKVSEAKRIFHNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFIGNM 674

Query: 412 SE-RNTVTWNSMIFGCANHG 430
               N   W +++     HG
Sbjct: 675 PLIPNLAVWEALLTAATIHG 694


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 258/470 (54%), Gaps = 44/470 (9%)

Query: 99  ILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           I+HAQ I  G+     +   ++T Y  C+ I  AR +FD+I    I  W ++   Y++ G
Sbjct: 158 IVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMG 217

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
           +  EA+ +F EM   G++ ++F + S+L A     ++  G  +H  ++      D+ V +
Sbjct: 218 FCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTN 277

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +LIDMY+KCG ++ AK VFD+M++KD                                  
Sbjct: 278 ALIDMYAKCGHLQFAKHVFDQMLDKD---------------------------------- 303

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
            VV+W ++++ ++  G      ++F  M  K    +VVSW S+I  LV      EA + F
Sbjct: 304 -VVSWTSMVNAYANQGLVENAVQIFNHMPVK----NVVSWNSIICCLVQEGQYTEAVELF 358

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHG--CAIVMGVEGDLHVRSALVDMYA 396
             M   G  P  AT+ SIL  C++  ++  GK+ H   C  ++ V   L   ++L+DMYA
Sbjct: 359 HRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTL--CNSLIDMYA 416

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTA 455
           KCG +  A  +F  M E+N V+WN +I   A HG+ +EAIE+F  M+      D ++FT 
Sbjct: 417 KCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTG 476

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           +L+AC H GLV++G+  F++M   ++I P  EHYACMVDLLGR G L EA  +I+ M  +
Sbjct: 477 LLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVK 536

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           PD+ VWGALLGAC+ +GN+E+A+   K L EL   ++   +LL+++Y+ +
Sbjct: 537 PDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSES 586



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 139/311 (44%), Gaps = 35/311 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H  ++++G+   + +   LI  Y +C ++  A+ +FD++   ++  W ++  A
Sbjct: 254 LDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNA 313

Query: 154 YARRGY-------------------------------HQEAVTVFHEMHIQGLKQNIFVI 182
           YA +G                                + EAV +FH M I G+  +   +
Sbjct: 314 YANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATL 373

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            S+L  C +  D+  G++ H  +  +       + +SLIDMY+KCG+++ A  +F  M E
Sbjct: 374 VSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPE 433

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           K++V+ N ++      G   EA+ + + +    + P+ +T+  L+S  S SG   M    
Sbjct: 434 KNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYY 493

Query: 303 FQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           F +M +   + P V  +  ++  L       EA    ++M  +   P      ++L AC 
Sbjct: 494 FDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVK---PDVVVWGALLGACR 550

Query: 362 SAANMRRGKEI 372
              N+   K+I
Sbjct: 551 IYGNLEIAKQI 561



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 144/327 (44%), Gaps = 46/327 (14%)

Query: 223 MYSKCGSVEKAKKVFDEMV----EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +  +C S+++ K V  +++       +V +  ++S  VQ G    A  L ++I     +P
Sbjct: 45  LLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIP----QP 100

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           N   +N LI G+S S D +                                   ++   F
Sbjct: 101 NKFMYNHLIRGYSNSNDPM-----------------------------------KSLLLF 125

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           ++M+S G  P   T   +L ACA+         +H  AI +G+     V++A++  Y  C
Sbjct: 126 RQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVAC 185

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVL 457
             I  AR +FD +S+R  V+WNSMI G +  G+CDEAI LF +M +   + D  +  ++L
Sbjct: 186 RLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLL 245

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           +A      ++LG R  ++      +   +     ++D+  + G L  A  +   M  + D
Sbjct: 246 SASSKHCNLDLG-RFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQM-LDKD 303

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHL 544
           +  W +++ A  N G +E A     H+
Sbjct: 304 VVSWTSMVNAYANQGLVENAVQIFNHM 330



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 39/219 (17%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK  H  +  + +     +   LI  Y +C  +  A  +F  +P+ N+  W  + GA
Sbjct: 386 LALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGA 445

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A  G+ +EA+ +F  M   GL  +      +L AC H   +  G     +++       
Sbjct: 446 LALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMIS------ 499

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F +S  ++ Y+                         MV    + G   EA+ L++++  
Sbjct: 500 TFRISPGVEHYA------------------------CMVDLLGRGGFLGEAMTLIQKM-- 533

Query: 274 PRVKPNVVTWNTLISGFSKSGD-----QVMVSKLFQLMR 307
             VKP+VV W  L+      G+     Q+M  +L +L R
Sbjct: 534 -PVKPDVVVWGALLGACRIYGNLEIAKQIM-KQLLELGR 570



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 40/255 (15%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           PT  T+  +L  C+S   M+R K +H   I+ G+   +     L+ +  + G +  A  L
Sbjct: 37  PTHQTLHHLLDQCSS---MKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLL 93

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACC----- 461
           FD++ + N   +N +I G +N     +++ LF QM     + +  +F  VL AC      
Sbjct: 94  FDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFY 153

Query: 462 ------HVGLVELGQ-----------------RLFNMMQEKY-KIMPRT-EHYACMVDLL 496
                 H   ++LG                  RL    ++ +  I  RT   +  M+   
Sbjct: 154 WEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGY 213

Query: 497 GRAGRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIELAEIAAKH--LSELEPES 551
            + G   EA  + + M     E D+F   +LL A   H N++L      +  ++ +E +S
Sbjct: 214 SKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDS 273

Query: 552 AANNMLLTDLYANAG 566
              N L+ D+YA  G
Sbjct: 274 IVTNALI-DMYAKCG 287


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 167/481 (34%), Positives = 263/481 (54%), Gaps = 44/481 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G +LH  +  SG          L+  Y     +  A  +FDE+P+ ++  W A+  
Sbjct: 92  ALRLG-LLHPNVFASG---------SLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLS 141

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              R     +AV +F  M  +G+  +   + SVL  C  L D      +H   +K     
Sbjct: 142 GLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSG 201

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + FV ++LID+Y K G + +A+ VF  M  +D+V  N+++S Y Q G    A+ L   + 
Sbjct: 202 ELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMM 261

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQV---------------------------MVSKLFQL 305
              V P+V+T  +L S  ++ GD+                            M +KL ++
Sbjct: 262 KSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKI 321

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPA 359
             A+ V     + DVVSW ++I+G + N  ++EA   + +M + +G  P   T  SILPA
Sbjct: 322 DAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPA 381

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            ++   +++G  +H  +I  G+  D++V + L+D+YAKCG + EA  LF+ M  R+T  W
Sbjct: 382 YSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPW 441

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N++I G   HG+  +A+ LF+QM++   K D+++F ++L AC H GLV+ G+  F++MQ 
Sbjct: 442 NAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAACSHAGLVDQGRSFFDLMQT 501

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y I+P  +HYACMVD+LGRAG+L EA+E I+ M  +PD  VWGALLGAC+ HGN+ELA 
Sbjct: 502 VYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALLGACRIHGNVELAA 561

Query: 539 I 539
           I
Sbjct: 562 I 562


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 171/507 (33%), Positives = 262/507 (51%), Gaps = 82/507 (16%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            AL + K +H  +   GL     +   LI+ Y++   +  AR +FD +   N   W ++  
Sbjct: 790  ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMIS 849

Query: 153  AYARRGYHQEAVTVFHE-----------------------------------MHIQGLKQ 177
            +YA  G+  +A ++F+E                                   M  +G K 
Sbjct: 850  SYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKP 909

Query: 178  NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
            N   + SVL+A   L  +  G++ H  VL++ F  D +V +SLIDMY K  S+  A+ VF
Sbjct: 910  NSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVF 969

Query: 238  DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            D M  ++I A                                   WN+L+SG+S  G   
Sbjct: 970  DNMKNRNIFA-----------------------------------WNSLVSGYSFKGMFE 994

Query: 298  MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               +L   M  +G++PD+V+W  +ISG     C  +AF            P SA+I+ +L
Sbjct: 995  DALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAF-----------MPNSASITCLL 1043

Query: 358  PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             ACAS + +++GKEIH  +I  G   D+ V +AL+DMY+K   +  A  +F ++  +   
Sbjct: 1044 RACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLA 1103

Query: 418  TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            +WN MI G A  G   EAI +FN+M++     D ++FTA+L+AC + GL+  G + F+ M
Sbjct: 1104 SWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSM 1163

Query: 477  QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
               Y+I+PR EHY CMVDLLGRAG L EA+++I TM  +PD  +WGALLG+C+ H N+  
Sbjct: 1164 ITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXF 1223

Query: 537  AEIAAKHLSELEPESAANNMLLTDLYA 563
            AE AAK+L +LEP ++AN +L+ +LY+
Sbjct: 1224 AETAAKNLFKLEPNNSANYILMMNLYS 1250



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/577 (24%), Positives = 242/577 (41%), Gaps = 102/577 (17%)

Query: 19   LSMNDFYSIRRIYFALLSGTQLVLS--CSKSASDAGK-PLINGIFIEAHYKMPIISRSFH 75
            L   DF+S   +++  L    L  +    +  S AG   ++  +F E H K  +      
Sbjct: 618  LGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSE-- 675

Query: 76   LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
                 YS  ++   R   +  G  +H  LI  G      +   L+ FY  C  +  A  +
Sbjct: 676  ----VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 731

Query: 136  FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
            F E+P      W        +    Q+ V +F +M    LK     I  VL+ACG +  +
Sbjct: 732  FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 791

Query: 196  GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
               ++IH  V +    +D  + + LI MYSK G +E A++VFD M  ++  + N+M+S Y
Sbjct: 792  NAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSY 851

Query: 256  VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
               G   +A +L  E+ +  +KP++VTWN L+SG    G +  V  + Q M+ +G +P+ 
Sbjct: 852  AALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPN- 910

Query: 316  VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
                                              S++++S+L A +    +  GKE HG 
Sbjct: 911  ----------------------------------SSSMTSVLQAISELGFLNMGKETHGY 936

Query: 376  AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
             +  G + D++V ++L+DMY K   +  A+ +FD M  RN   WNS++ G +  G  ++A
Sbjct: 937  VLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDA 996

Query: 436  IELFNQMEE-----------------------RKKL--DHLSFTAVLTACCHVGLVELGQ 470
            + L NQME+                       RK    +  S T +L AC  + L++ G+
Sbjct: 997  LRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGK 1056

Query: 471  R-------------------LFNM------MQEKYKIMPRTEH-----YACMV---DLLG 497
                                L +M      ++  +K+  R ++     + CM+    + G
Sbjct: 1057 EIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFG 1116

Query: 498  RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
                    +  ++ +   PD   + ALL ACKN G I
Sbjct: 1117 LGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLI 1153


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 178/542 (32%), Positives = 284/542 (52%), Gaps = 67/542 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R ++ GK++H  +  + L     +   L+  Y +C ++  A+ +F EIP  N   W  L 
Sbjct: 119 RNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLI 178

Query: 152 GAYARRGYHQEAVTVFHEM------------------------------HIQGLKQNIFV 181
             YA++G   +A+ +F +M                              H +GLK + F 
Sbjct: 179 LGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFT 238

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM- 240
            PSVLKACG   ++  G +IH  ++K  F +  + +S+LIDMYS C  + +A K+FD+  
Sbjct: 239 FPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYF 298

Query: 241 ----VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL---------- 286
               V + +   N+M+SG+V  G   EAL+++  +    V+ +  T++ +          
Sbjct: 299 RNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNL 358

Query: 287 -----ISGFS-KSG---DQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGL 325
                + GF   SG   D V+ S L  +   +G             + DVV+W+S+I+G 
Sbjct: 359 SLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGC 418

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                +  AF  F +M+  G       IS +L AC+S A+ + GK++H   +  G E + 
Sbjct: 419 ARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEG 478

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EE 444
            V +AL+DMYAKCG I +A +LF  +SE +T++W S+I GCA +G  +EAI L ++M E 
Sbjct: 479 VVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIES 538

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             K + ++   VLTAC H GLVE    +FN ++  + ++P  EHY CMVD+LG+AGR  E
Sbjct: 539 GTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEE 598

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           A ++I  M  +PD  +W +LLGAC  + N +LA I A+HL    PE  +  ++L+++YA 
Sbjct: 599 AVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAA 658

Query: 565 AG 566
            G
Sbjct: 659 LG 660



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 227/457 (49%), Gaps = 51/457 (11%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           IR R++++ K LH+ +I SG      I   +I+ Y++C +I  AR +FDE+P  NI  W 
Sbjct: 14  IRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWT 73

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQ-NIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            +           EA+++++EM    ++Q N F+  +VLKACG + ++  G+ +H  + +
Sbjct: 74  TMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQ 133

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                D  ++++L+DMY KCGS+  A++VF E+  K+  + N ++ GY ++GL  +A+ L
Sbjct: 134 AKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKL 193

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
            +++     +P++V+WN++I+G   +     + +   +M  KG++ D             
Sbjct: 194 FDKMP----EPDIVSWNSIIAGLVDNASSRAL-RFVSMMHGKGLKMD------------- 235

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                                   T  S+L AC  +  +  G+EIH   I  G E   + 
Sbjct: 236 ----------------------EFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYC 273

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVT-----WNSMIFGCANHGYCDEAIELFNQM 442
            SAL+DMY+ C  +SEA  +FD+    ++V+     WNSM+ G   +G   EA+ + + M
Sbjct: 274 ISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHM 333

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAG 500
                + D  +F+ VL  C +   + L  ++   ++   Y++       + ++D+  + G
Sbjct: 334 HRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVG--SILIDIYAKQG 391

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            +  A  + + +  + D+  W +L+  C   G+ +LA
Sbjct: 392 SINNALRLFERL-PDKDVVAWSSLITGCARFGSDKLA 427



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 175/365 (47%), Gaps = 9/365 (2%)

Query: 55  LINGIFIEAHYKMPIISRS-FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLT 113
           ++NG ++EA   +  + RS        +S  ++I +    L     +H  +I SG     
Sbjct: 318 VVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDC 377

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            + + LI  Y +  +I++A  LF+ +P  ++  W +L    AR G  + A ++F +M   
Sbjct: 378 VVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHL 437

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           GL+ + FVI  VLKAC  L+    G+++HSL LK  + ++  V ++LIDMY+KCG +E A
Sbjct: 438 GLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDA 497

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
             +F  + E D ++  +++ G  Q G A EA++L+ ++     KPN +T   +++    S
Sbjct: 498 LSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHS 557

Query: 294 GDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           G       +F  +    G+ P    +  ++  L      +EA     EM    F P    
Sbjct: 558 GLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEM---PFKPDKTI 614

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF---ISEARTLFD 409
            SS+L AC +  N R    I    ++     D+ V   L ++YA  G    +S+ R    
Sbjct: 615 WSSLLGACGTYKN-RDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRETVK 673

Query: 410 KMSER 414
           K+ ++
Sbjct: 674 KIGKK 678



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           C    +++  K +H   I  G    + + + ++ +Y+KC  I +AR +FD+M  RN V+W
Sbjct: 13  CIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSW 72

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK--KLDHLSFTAVLTACCHVGLVELGQRL-FNMM 476
            +M+    N     EA+ L+N+M E K  + +   ++AVL AC  V  VELG+ + +++ 
Sbjct: 73  TTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIF 132

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           Q K  +         ++D+  + G L +A  +   +  + +   W  L+      G   L
Sbjct: 133 QAKLDV--DIVLMNALLDMYVKCGSLRDAQRVFCEIPCK-NATSWNTLILGYAKQG---L 186

Query: 537 AEIAAKHLSEL-EPESAANNMLLTDLYANA 565
            + A K   ++ EP+  + N ++  L  NA
Sbjct: 187 IDDAMKLFDKMPEPDIVSWNSIIAGLVDNA 216


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 255/478 (53%), Gaps = 42/478 (8%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHR----WIA 149
           + G +  A  I S  AR    +   +I  Y E  N+  A+ LF ++ +  + R    W  
Sbjct: 317 RCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNC 376

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   +       +A+ +F ++ ++G++ + F + S+L     ++ I  G++IHS+ +   
Sbjct: 377 MISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKG 436

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             +++FV  +L++MY KC  +  A+  FDE+ E+D                         
Sbjct: 437 LQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERD------------------------- 471

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                       TWN LISG+++      + +L + M++ G EP+V +W S+++GLV N 
Sbjct: 472 ----------TSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENK 521

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             D A   F EM      P   T+  IL AC+  A + RGK++H  +I  G + D H+ +
Sbjct: 522 QYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGA 581

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKL 448
            LVDMYAKCG I     +++K+S  N V  N+M+   A HG+ +E I +F +M + R + 
Sbjct: 582 TLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRP 641

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           DH++F +VL++C H G +++G   F +M E Y I P  +HY CMVDLL RAG+L EAY++
Sbjct: 642 DHVTFLSVLSSCVHAGSIKIGYECFYLM-ETYNITPTLKHYTCMVDLLSRAGKLDEAYQL 700

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           IK M  E D   W ALLG C  H  + L EIAA+ L ELEP +  N +LL +LYA+AG
Sbjct: 701 IKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAG 758



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/402 (31%), Positives = 199/402 (49%), Gaps = 38/402 (9%)

Query: 61  IEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLI 120
           +  H   P      H  P   +    I     +L  GK LH+  I +G      + TKL+
Sbjct: 14  LPKHQTKPPNFSLLHTPPLTSTTYSTILQSSNSLTLGKQLHSHSIKTGFYNHNFVQTKLL 73

Query: 121 TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL--KQN 178
             Y+   +   A  +FD++   N+H W A+   +   G   +   +F E    GL  K +
Sbjct: 74  QMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLD 133

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            FV P VL  C  L D+  G ++H +VLKH F T+ +V ++LIDMY KCGS+++AKKV +
Sbjct: 134 FFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLE 193

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M +KD V+ N++++  V  G+  EAL+L+E +    ++PNVVTW+ +I GFS +   V 
Sbjct: 194 GMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVE 253

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             +LF  M   GV PD                                   + T++S+LP
Sbjct: 254 SVELFARMVGAGVAPD-----------------------------------ARTLASVLP 278

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC+    +  GKE+HG  +   +  +  V +ALV MY +CG +  A  +F K + +   +
Sbjct: 279 ACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAAS 338

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
           +N+MI G   +G   +A ELF QME E  + D +S+  +++ 
Sbjct: 339 YNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISG 380



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +  GK +HA  I +G      I   L+  Y +C +I H   ++++I   N+    A+  A
Sbjct: 558 IHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTA 617

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA  G+ +E + +F  M    ++ +     SVL +C H   I  G +   L+  ++    
Sbjct: 618 YAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLMETYNITPT 677

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGLA---TEALNLV 268
               + ++D+ S+ G +++A ++   M +E D V  +A++ G ++ + +A     A  L+
Sbjct: 678 LKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLI 737

Query: 269 EEIGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLV 326
           E      ++P N   +  L + ++ +G    ++K  +LM  KG++     SW     G V
Sbjct: 738 E------LEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIEDRDG-V 790

Query: 327 HNF 329
           H F
Sbjct: 791 HIF 793


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 164/514 (31%), Positives = 272/514 (52%), Gaps = 41/514 (7%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R+  +Q G  +H   +  GL+   ++   L+  Y++C  +  A+MLFD+  + N   W  
Sbjct: 146 REVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNT 205

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           + G    +GY  EA  +F EM +Q  ++ N   + ++L AC  +S + + +++H   ++H
Sbjct: 206 MIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRH 265

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
            F  D  V +  +  Y+KCG +  A++VF  M  K + + NA++ G  Q G   +ALNL 
Sbjct: 266 GFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLY 325

Query: 269 EEIGTPRVKPNVVTWN-----------------------------------TLISGFSKS 293
            ++    + P+  T                                     +L+S +   
Sbjct: 326 IQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHC 385

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G+      LF  M     E   VSW ++ISG   N   ++A   F++++S GF P+   +
Sbjct: 386 GESSSARLLFDGME----EKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAV 441

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S+L AC+  + +R GKE H  A+   +  D+ V  + +DMYAK G I E+R++FD +  
Sbjct: 442 VSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKN 501

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL 472
           ++  +WN++I     HG  +E+IELF +M +  ++ D  +F  +LT C H GLVE G + 
Sbjct: 502 KDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKY 561

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           FN MQ  + I P+ EHYAC++D+LGRAGRL +A  ++  M  +PD  VW +LL  C+N G
Sbjct: 562 FNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFG 621

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +E+ +I A+ L ELEP++  N + L++LYA +G
Sbjct: 622 ELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSG 655



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/484 (26%), Positives = 226/484 (46%), Gaps = 47/484 (9%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           DR L  G+++H  +I  GL     +   LI  Y +   +  A  +F  +P  N+  W ++
Sbjct: 46  DRGL--GEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSI 103

Query: 151 TGAYARRGYHQEAVTVFHEMHI--QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
              ++  G+ ++   +  EM    +GL  +I  + +VL  C    D+  G +IH L +K 
Sbjct: 104 ISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKL 163

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL- 267
               D  V +SL+DMYSKCG + +A+ +FD+   K+ V+ N M+ G   +G   EA NL 
Sbjct: 164 GLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLF 223

Query: 268 ----------VEEIGTPRVKP-------------------------NVVTWNTLISGFSK 292
                     V E+    + P                         + +  N  ++ ++K
Sbjct: 224 REMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAK 283

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            G  +   ++F  M  K V     SW ++I G   N    +A + + +M   G  P   T
Sbjct: 284 CGMLICAERVFYSMETKTVN----SWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFT 339

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           I S+L A A   ++R GKE+HG  +  G+E D  +  +L+ +Y  CG  S AR LFD M 
Sbjct: 340 IGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGME 399

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQR 471
           E+++V+WN+MI G + +G  ++A+ LF ++  +  +   ++  +VL AC     + LG+ 
Sbjct: 400 EKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKE 459

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
             +    K  +M         +D+  ++G + E+  +   +  + DL  W A++ A   H
Sbjct: 460 T-HCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNK-DLASWNAIIAAYGVH 517

Query: 532 GNIE 535
           G+ E
Sbjct: 518 GDGE 521



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 160/328 (48%), Gaps = 35/328 (10%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F  P V+KAC    D G GE IH +V+K     D FV ++LI MY K G V+ A KVF  
Sbjct: 32  FTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHY 91

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEI--GTPRVKPNVVTWNTLISGFSKSGDQV 297
           M  +++V+ N+++SG+ + G + +  +++ E+  G   + P++ T  T++   ++  D  
Sbjct: 92  MPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQ 151

Query: 298 MVSKLFQLMRAKGVEPDV-------------------------------VSWTSVISGLV 326
           M  ++  L    G+  DV                               VSW ++I GL 
Sbjct: 152 MGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLC 211

Query: 327 HNFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                 EAF+ F+EM + +       T+ +ILPAC   + +R  KE+HG +I  G + D 
Sbjct: 212 TKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDE 271

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
            V +  V  YAKCG +  A  +F  M  +   +WN++I GCA +G   +A+ L+ QM   
Sbjct: 272 LVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYS 331

Query: 446 KKL-DHLSFTAVLTACCHVGLVELGQRL 472
             + D  +  ++L A  H+  +  G+ +
Sbjct: 332 GLVPDWFTIGSLLLASAHLKSLRYGKEV 359



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 152/289 (52%), Gaps = 21/289 (7%)

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
           +G + RGL      +V ++G   +  +V   N LI+ + K G      K+F  M  +   
Sbjct: 42  TGSLDRGLGEVIHGMVIKMG---LLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVR--- 95

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLS--QGFCPTSATISSILPACASAANMRRGK 370
            ++VSW S+ISG   N  + + FD   EM++  +G  P  AT+ ++LP CA   +++ G 
Sbjct: 96  -NLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGI 154

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            IHG A+ +G+  D+ V ++LVDMY+KCG+++EA+ LFDK + +N V+WN+MI G    G
Sbjct: 155 RIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKG 214

Query: 431 YCDEAIELFN--QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           Y  EA  LF   QM+E  +++ ++   +L AC  +  +   + L       Y I    ++
Sbjct: 215 YIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHG-----YSIRHGFQY 269

Query: 489 YACM----VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
              +    V    + G L  A  +  +M T+  +  W AL+G C  +G+
Sbjct: 270 DELVANGFVAAYAKCGMLICAERVFYSMETKT-VNSWNALIGGCAQNGD 317



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 333 EAFDTFKEMLSQG-FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +A D F ++++   F   + T   ++ AC  + +   G+ IHG  I MG+  D+ V +AL
Sbjct: 13  DAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNAL 72

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM---EERKKL 448
           + MY K GF+  A  +F  M  RN V+WNS+I G + +G+  +  ++  +M   EE    
Sbjct: 73  IAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLP 132

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D  +   VL  C     V++G R+  +   K  +         +VD+  + G L EA +M
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAV-KLGLSEDVRVNNSLVDMYSKCGYLTEA-QM 190

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNI 534
           +   +   +   W  ++G     G I
Sbjct: 191 LFDKNNRKNAVSWNTMIGGLCTKGYI 216



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 4/276 (1%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           ++S  F  S  A    +    +  AL+ GK  H   + + L     +A   I  Y +   
Sbjct: 429 LVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGC 488

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I  +R +FD +   ++  W A+  AY   G  +E++ +F  M   G   + F    +L  
Sbjct: 489 IKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTV 548

Query: 189 CGHLSDIGTGEK-IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           C H   +  G K  + +   H         + ++DM  + G ++ A ++  EM E+    
Sbjct: 549 CSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSR 608

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
           + + +  + +     E   +V E        NV  + +L + ++ SG    V ++ Q+++
Sbjct: 609 VWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIK 668

Query: 308 AKGVEPDV-VSWTSVISGLVHNF-CNDEAFDTFKEM 341
             G++ D   SW   + G VH+F   D      KEM
Sbjct: 669 DIGLQKDAGCSWIE-LGGKVHSFVAGDNLLPQSKEM 703


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 273/510 (53%), Gaps = 39/510 (7%)

Query: 95  QSGKILHAQLIVSGL--ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           + G+ +HA L  SGL  AR++ I   L+  Y +C  I +A  +F  +P  +   W ++  
Sbjct: 472 RKGQEVHAYLFRSGLVDARIS-IGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMIS 530

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
                   +EAV+ FH M   G+  + F + S L +C  L  +  G +IH    K     
Sbjct: 531 GLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDL 590

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ-RGLATEALNLVEEI 271
           D  V ++L+ +Y++  S+ + +KVF +M E D V+ N+ +    +      +AL    E+
Sbjct: 591 DVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEM 650

Query: 272 GTPRVKPNVVTW-------------------NTLISGFSKSGDQVMVSKLFQLM-RAKGV 311
                +PN VT+                   + LI  +S + D  + + L     + + +
Sbjct: 651 MQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQM 710

Query: 312 EP------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           E             D VSW S+ISG +H+    +A D    M+ +G      T +++L A
Sbjct: 711 EDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSA 770

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CAS A + RG E+H CA+   +E D+ V SALVDMYAKCG I  A   F+ M  RN  +W
Sbjct: 771 CASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSW 830

Query: 420 NSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSMI G A HG+  +A+++F +M++  +  DH++F  VL+AC HVGLV+ G + F  M E
Sbjct: 831 NSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGE 890

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC--KNHGNIEL 536
            Y + PR EH++CMVDLLGRAG + +  + IKTM  +P++ +W  +LGAC   N  N EL
Sbjct: 891 VYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTEL 950

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            + AAK L ELEP++A N +LL++++A  G
Sbjct: 951 GQRAAKMLIELEPQNAVNYVLLSNMHAAGG 980



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 195/435 (44%), Gaps = 55/435 (12%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           Y    +L     LH QL  +G          LI  Y    N+  AR LFDE+P+ N+  W
Sbjct: 150 YKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSW 209

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT--GEKIHSLV 205
             L   Y +     EA ++F  +   GL  N F + S L+AC      G   G +IH+ +
Sbjct: 210 SCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFI 269

Query: 206 LKHSFGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            K    +D  + + L+ MYS C GS++ A +VFDE+  ++ V  N+++S Y +RG A  A
Sbjct: 270 CKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSA 329

Query: 265 LNLVEEIGTPRV----KPNVVTW------------------------------------- 283
             L   +    V    +PN  T                                      
Sbjct: 330 FKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVG 389

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           + L++GF++ G       +F+ M     + + V+   ++ GL      +EA   FKEM  
Sbjct: 390 SALVNGFARYGLMDCAKMIFKQM----YDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-K 444

Query: 344 QGFCPTSATISSILPACASAANM----RRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKC 398
                 S ++  +L      +N+    R+G+E+H      G V+  + + +ALV+MY KC
Sbjct: 445 DLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKC 504

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVL 457
             I  A ++F  M  ++TV+WNSMI G  ++   +EA+  F+ M+    +  + S  + L
Sbjct: 505 TAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTL 564

Query: 458 TACCHVGLVELGQRL 472
           ++C  +G + LG+++
Sbjct: 565 SSCSSLGWLTLGRQI 579



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 220/460 (47%), Gaps = 55/460 (11%)

Query: 115 IATKLITFYTECQ-NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           ++  L++ Y++C  +I  A  +FDEI   N   W ++   Y RRG    A  +F  M ++
Sbjct: 280 LSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQME 339

Query: 174 G----LKQNIFVIPSVLKACGHLSDIGTG--EKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227
           G    L+ N + + S++ A   L+D G    E++ + + K  F  D +V S+L++ +++ 
Sbjct: 340 GVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARY 399

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
           G ++ AK +F +M +++ V MN ++ G  ++    EA  + +E+    V+ N  +   L+
Sbjct: 400 GLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLL 458

Query: 288 SGFS---------KSGDQV----------------------MVSK---------LFQLMR 307
           S F+         + G +V                      M  K         +FQLM 
Sbjct: 459 STFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMP 518

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           +K    D VSW S+ISGL HN   +EA   F  M   G  P++ ++ S L +C+S   + 
Sbjct: 519 SK----DTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLT 574

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            G++IHG     G++ D+ V +AL+ +YA+   I+E + +F +M E + V+WNS I   A
Sbjct: 575 LGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALA 634

Query: 428 NH-GYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
            +     +A++ F   M+   + + ++F  +L A     ++ LG ++  ++  KY +   
Sbjct: 635 KYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALIL-KYSVADD 693

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
                 ++   G+  ++ +   +   MS   D   W +++
Sbjct: 694 NAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMI 733



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 163/372 (43%), Gaps = 43/372 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H +    GL     ++  L+T Y E  +I+  + +F ++P+ +   W +  GA
Sbjct: 573 LTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGA 632

Query: 154 YAR-RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            A+      +A+  F EM   G + N     ++L A    S +G G +IH+L+LK+S   
Sbjct: 633 LAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVAD 692

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVE-- 269
           D  + ++L+  Y KC  +E  + +F  M E +D V+ N+M+SGY+  G+  +A++LV   
Sbjct: 693 DNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPM 752

Query: 270 -----------------------------EIGTPRVK----PNVVTWNTLISGFSKSGDQ 296
                                        E+    V+     +VV  + L+  ++K G  
Sbjct: 753 MQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKI 812

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              S+ F+LM  +    ++ SW S+ISG   +    +A   F  M   G  P   T   +
Sbjct: 813 DYASRFFELMPVR----NIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGV 868

Query: 357 LPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           L AC+    +  G K       V G+   +   S +VD+  + G + +       M  + 
Sbjct: 869 LSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDP 928

Query: 415 NTVTWNSMIFGC 426
           N + W +++  C
Sbjct: 929 NILIWRTVLGAC 940



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 135/281 (48%), Gaps = 19/281 (6%)

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           NTLI+ + + G+ V   KLF  M  K    ++VSW+ +ISG   N   DEA   FK ++S
Sbjct: 179 NTLINIYVRIGNLVSARKLFDEMPQK----NLVSWSCLISGYTQNRMPDEACSLFKGVIS 234

Query: 344 QGFCPTSATISSILPAC--ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC-GF 400
            G  P    + S L AC    +  ++ G +IH     +    D+ + + L+ MY+ C G 
Sbjct: 235 SGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGS 294

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-----EERKKLDHLSFTA 455
           I +A  +FD++  RN+VTWNS+I      G    A +LF+ M     E   + +  +  +
Sbjct: 295 IDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCS 354

Query: 456 VLTACCHV---GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           ++TA C +   GLV L Q L  +  EK   +      + +V+   R G +  A  + K M
Sbjct: 355 LVTAACSLADCGLVLLEQMLTRI--EKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQM 412

Query: 513 STEPDLFVWGALLGACKNHGNIELAEI--AAKHLSELEPES 551
                + + G ++G  + H   E A++    K L E+  ES
Sbjct: 413 YDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSES 453



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 19/300 (6%)

Query: 68   PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
            P++ R   L    ++  +        L+ G  +HA  + + L     + + L+  Y +C 
Sbjct: 751  PMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCG 810

Query: 128  NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
             I +A   F+ +P  NI+ W ++   YAR G+ Q+A+ +F  M   G   +      VL 
Sbjct: 811  KIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLS 870

Query: 188  ACGHLSDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
            AC H+  +  G K H   +   +G    +   S ++D+  + G V+K +     M     
Sbjct: 871  ACSHVGLVDEGYK-HFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPN 929

Query: 246  VAMNAMVSGYVQR--GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
            + +   V G   R  G  TE      ++       N V +  L +  +  G+   V +  
Sbjct: 930  ILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEAR 989

Query: 304  QLMRAKGVEPDV-VSWTSVISGLVHNFC--------NDEAFDTFKEMLSQ----GFCPTS 350
              MR   V+ D   SW ++  G VH F          ++ ++  KE++++    G+ P +
Sbjct: 990  LAMRKAAVKKDAGCSWVNMKDG-VHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPET 1048


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 276/508 (54%), Gaps = 51/508 (10%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           + G+I+ A+ +   +     I  T +I+ Y +C  I  AR LFD +  K N+  W A+ G
Sbjct: 64  KDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVG 123

Query: 153 AYARRGYHQEAVTVFHEMH----------IQGLKQN--------IF------------VI 182
            Y R     +A  +F+EM           I G  QN        +F             +
Sbjct: 124 GYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTV 183

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            S+L  CG + +     ++   + +     D    +++I   SK G +++A+ +FD M E
Sbjct: 184 MSMLAQCGRIEE---ARRLFDRMPER----DVISWTAMIAGLSKNGRIDEARLLFDRMPE 236

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           +++V+ NAM++GY Q     EAL+L E +     + ++ +WNT+I+G  ++GD     KL
Sbjct: 237 RNVVSWNAMITGYAQNLRLDEALDLFERM----PERDLPSWNTMITGLIQNGDLRRARKL 292

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPACA 361
           F  M  K    +V+SWT++I+G V    ++EA   F  MLS  G  P   T  S+L AC+
Sbjct: 293 FNEMPKK----NVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACS 348

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK--MSERNTVTW 419
           + A +  G+++H        +    V SAL++MY+KCG +  AR +FD    S+R+ V+W
Sbjct: 349 NLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSW 408

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N +I   A+HGY  EAI  F +M +   K D +++  +L+AC H GLVE G + F+ + +
Sbjct: 409 NGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVK 468

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
              I+ R +HYAC+VDL GRAGRL EA+  I+ + T+P   VWGALL  C  H N+++ +
Sbjct: 469 DRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGK 528

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
            AAK L E+EPE+A   +LL+++YA+ G
Sbjct: 529 QAAKKLLEVEPENAGTYLLLSNIYASTG 556



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 164/332 (49%), Gaps = 29/332 (8%)

Query: 205 VLKHSFGTDAFVV--SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
           + +  F  D  V   + +I   SK G + +A+++FDEM E D++    ++SGY++ G+  
Sbjct: 41  IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIE 100

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
           EA  L + +     K NVVTW  ++ G+ +S       KLF  M  K    +VVSW ++I
Sbjct: 101 EARRLFDRVDA---KKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNK----NVVSWNTMI 153

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
            G   N   D A   F++M  +     + T+ S+L  C      RR             E
Sbjct: 154 DGYAQNGRIDSAMYLFEKMPERNVVSWN-TVMSMLAQCGRIEEARR-------LFDRMPE 205

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            D+   +A++   +K G I EAR LFD+M ERN V+WN+MI G A +   DEA++LF +M
Sbjct: 206 RDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERM 265

Query: 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
            ER   D  S+  ++T     G +   ++LFN M +K  I   T    C+     + G  
Sbjct: 266 PER---DLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCV-----QEGES 317

Query: 503 AEAYE----MIKTMSTEPDLFVWGALLGACKN 530
            EA +    M+ T   +P+   + ++LGAC N
Sbjct: 318 EEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 349



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 131/274 (47%), Gaps = 28/274 (10%)

Query: 270 EIGTPR----VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
           +I  PR    V  NV   N +I+  SK G  +   +LF  MR    EPDV++WT+VISG 
Sbjct: 38  KISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMR----EPDVITWTTVISGY 93

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           +     +EA   F  + ++          +++   A      R  +I     +     + 
Sbjct: 94  IKCGMIEEARRLFDRVDAK---------KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNK 144

Query: 386 HVRS--ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +V S   ++D YA+ G I  A  LF+KM ERN V+WN+++   A  G  +EA  LF++M 
Sbjct: 145 NVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMP 204

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
           ER   D +S+TA++      G ++  + LF+ M E+  +      +  M+    +  RL 
Sbjct: 205 ER---DVISWTAMIAGLSKNGRIDEARLLFDRMPERNVV-----SWNAMITGYAQNLRLD 256

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           EA ++ + M  E DL  W  ++     +G++  A
Sbjct: 257 EALDLFERMP-ERDLPSWNTMITGLIQNGDLRRA 289



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 29/192 (15%)

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           V+G++   + ++   +K G I EAR LFD+M E + +TW ++I G    G  +EA  LF+
Sbjct: 48  VDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD 107

Query: 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK--------------------- 479
           +++ +K +  +++TA++        +   ++LFN M  K                     
Sbjct: 108 RVDAKKNV--VTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSA 165

Query: 480 ---YKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
              ++ MP      +  ++ +L + GR+ EA  +   M  E D+  W A++     +G I
Sbjct: 166 MYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMP-ERDVISWTAMIAGLSKNGRI 224

Query: 535 ELAEIAAKHLSE 546
           + A +    + E
Sbjct: 225 DEARLLFDRMPE 236



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 45/204 (22%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE--IPKTNIHRWIAL 150
            L  G+ +H  +  +     T + + LI  Y++C  +  AR +FD+    + ++  W  +
Sbjct: 352 GLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGI 411

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             AYA  GY +EA+  F EM   G K +      +L AC H                   
Sbjct: 412 IAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSH------------------- 452

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA-----MVSGYVQRGLATEAL 265
                            G VE+  K FDE+V+   + +       +V    + G   EA 
Sbjct: 453 ----------------AGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAF 496

Query: 266 NLVEEIGTPRVKPNVVTWNTLISG 289
             +E + T   KP+   W  L++G
Sbjct: 497 GFIERLET---KPSARVWGALLAG 517


>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g28690, mitochondrial; Flags: Precursor
 gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 520

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 167/516 (32%), Positives = 276/516 (53%), Gaps = 49/516 (9%)

Query: 59  IFIEAHYK-MPIISRSFHLSPAAY-SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA 116
           I    HY   P+      LSPA Y +  ++ +I   A ++GK +HA +I +G      I+
Sbjct: 13  ILPSNHYSTFPLKQNVSSLSPAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPDLNIS 72

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
            KL+  + +C  + +AR +FDE+PK  +  +  +   Y + G  +E + +   M   G K
Sbjct: 73  IKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSYSGEK 132

Query: 177 QNIFVIPSVLKACGHLSDIGTGEK-----IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
            + + +  VLKA           +     +H+ ++K     D  ++++L+D Y K G +E
Sbjct: 133 ADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLE 192

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-GTPRVKPNVVTWNTLISGF 290
            A+ VF+ M ++++V   +M+SGY+ +G   +A    EEI  T +VK ++V +N ++ GF
Sbjct: 193 SARTVFETMKDENVVCCTSMISGYMNQGFVEDA----EEIFNTTKVK-DIVVYNAMVEGF 247

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           S+SG+                                      + D +  M   GF P  
Sbjct: 248 SRSGETA----------------------------------KRSVDMYISMQRAGFHPNI 273

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +T +S++ AC+   +   G+++H   +  GV   + + S+L+DMYAKCG I++AR +FD+
Sbjct: 274 STFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQ 333

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELG 469
           M E+N  +W SMI G   +G  +EA+ELF +M+E R + ++++F   L+AC H GLV+ G
Sbjct: 334 MQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKG 393

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             +F  MQ  Y + P+ EHYAC+VDL+GRAG L +A+E  + M   PD  +W ALL +C 
Sbjct: 394 YEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCN 453

Query: 530 NHGNIELAEIAAKHLSELEPESAANNML-LTDLYAN 564
            HGN+ELA IAA  L +L  +      L L+++YA+
Sbjct: 454 LHGNVELASIAASELFKLNADKRPGAYLALSNVYAS 489


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 258/448 (57%), Gaps = 17/448 (3%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +++ +    NI  +R LFD++P  NI  W A+  AY +R    EA  +F EM  +     
Sbjct: 201 MLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSW 260

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             +I   ++       IG  ++   L+ +  +  +    +++I  Y +C  V++A++ FD
Sbjct: 261 TTMINGYVR-------IGKLDEARELLNEMPY-RNIGAQTAMISGYIQCNKVDEARRFFD 312

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
           E+   D+V  NAM++GY   G   EAL L + +    V  ++VTWNT+IS +++ G    
Sbjct: 313 EIGTWDVVCWNAMIAGYAHHGRINEALCLSKRM----VNKDMVTWNTMISCYAQVGQMDR 368

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             K+F+ M     E D+VSW S+I+G + N  N +A  +F  M  +G  P   + +  L 
Sbjct: 369 AVKIFEEMG----ERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLS 424

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           +CA+ A ++ G ++H   +  G    L V +AL+ MYAKCG I EA  +F+ +   + ++
Sbjct: 425 SCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVIS 484

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I G A +GY  EA++LF +M  E    D ++F  +L+AC H G+V+ G +LF  M 
Sbjct: 485 WNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMS 544

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + Y I P  EHYACMVDLLGR GRL EA+E+++ M  +    VWGALLGAC+ HGN+EL 
Sbjct: 545 KVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELG 604

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANA 565
            +AA  LSE EP   +N +LL++++A A
Sbjct: 605 RLAAHKLSEFEPHKTSNYVLLSNIHAEA 632



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 237/504 (47%), Gaps = 42/504 (8%)

Query: 55  LINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           L NG F EA+    I+ R    S   ++  I  Y R+  ++  + L   L  S   +   
Sbjct: 48  LHNGKFDEAYKLFVIMPRRDLFS---WTLMITCYTRNGEVEKARELFDSLPCS-YRKGVA 103

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
               +I+ Y +   ++ A+ LFDE+P  N+  W ++   Y +    +  +  F+EM  + 
Sbjct: 104 CWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERD 163

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS--SLIDMYSKCGSVEK 232
           +     ++   ++    + D+ +  K      K +      VVS  +++  +++ G++ +
Sbjct: 164 VVSWNLMVDGFIQ----VGDLDSAWKFFQETQKPN------VVSWVTMLSGFARNGNILE 213

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           ++++FD+M  ++IV+ NAM+S YVQR    EA  L EE+  P  + + V+W T+I+G+ +
Sbjct: 214 SRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEM--P--ERDSVSWTTMINGYVR 269

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN--DEAFDTFKEMLSQGFCPTS 350
            G      +L   M  + +       T++ISG +   CN  DEA   F E+ +      +
Sbjct: 270 IGKLDEARELLNEMPYRNIGAQ----TAMISGYIQ--CNKVDEARRFFDEIGTWDVVCWN 323

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           A I       A  A+  R  E   C     V  D+   + ++  YA+ G +  A  +F++
Sbjct: 324 AMI-------AGYAHHGRINEAL-CLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEE 375

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELG 469
           M ER+ V+WNS+I G   +G   +A++ F  M  E KK D LSF   L++C  +  +++G
Sbjct: 376 MGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVG 435

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
            +L  ++ +   +     + A ++ +  + GR+ EA  ++       D+  W +L+G   
Sbjct: 436 NQLHQVVVKGGYLNYLVVNNA-LITMYAKCGRILEA-GLVFNGICHADVISWNSLIGGYA 493

Query: 530 NHGNIELAEIAAKHLSELEPESAA 553
            +G     + A K   E+  E  A
Sbjct: 494 ING---YGKEALKLFEEMASEGMA 514



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 153/357 (42%), Gaps = 51/357 (14%)

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV--------- 268
           +S+I +Y+K G +  A+ +FD+M  +++V+ N MVSGY+  G   EA  L          
Sbjct: 10  NSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDLF 69

Query: 269 ------------EEIGTPR---------VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
                        E+   R          +  V  WN +ISG+ K G      +LF  M 
Sbjct: 70  SWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMP 129

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            K    +++SW S+++G   N       + F EM  +     +  +   +      +  +
Sbjct: 130 VK----NLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWK 185

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
             +E     +V  V         ++  +A+ G I E+R LFD+M  RN V+WN+MI    
Sbjct: 186 FFQETQKPNVVSWV--------TMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYV 237

Query: 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
                DEA  LF +M ER   D +S+T ++     +G ++  + L N M  +  I  +T 
Sbjct: 238 QRCEIDEASRLFEEMPER---DSVSWTTMINGYVRIGKLDEARELLNEMPYR-NIGAQT- 292

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
               M+    +  ++ EA      + T  D+  W A++    +HG I  A   +K +
Sbjct: 293 ---AMISGYIQCNKVDEARRFFDEIGT-WDVVCWNAMIAGYAHHGRINEALCLSKRM 345



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 53/288 (18%)

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M EK+ V  N+M+S Y + G    A NL +++  PR   N+V+WNT++SG+  +G     
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKM--PR--RNLVSWNTMVSGYLHNGKFDEA 56

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            KLF +M  +    D+ SWT +I+    N   ++A + F                  LP 
Sbjct: 57  YKLFVIMPRR----DLFSWTLMITCYTRNGEVEKARELFDS----------------LP- 95

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
                          C+   GV       +A++  Y K G ++EA+ LFD+M  +N ++W
Sbjct: 96  ---------------CSYRKGVA----CWNAMISGYVKKGRVNEAKRLFDEMPVKNLISW 136

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           NSM+ G   +      +E FN+M+ER   D +S+  ++     VG ++   + F   QE 
Sbjct: 137 NSMLAGYTQNRKMRLGLEFFNEMDER---DVVSWNLMVDGFIQVGDLDSAWKFF---QET 190

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            K  P    +  M+    R G + E+  +   M +  ++  W A++ A
Sbjct: 191 QK--PNVVSWVTMLSGFARNGNILESRRLFDQMPSR-NIVSWNAMISA 235



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           ++++ +YAK G I+ AR LFDKM  RN V+WN+M+ G  ++G  DEA +LF  M  R   
Sbjct: 10  NSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRR--- 66

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D  S+T ++T     G VE  + LF+ +   Y+       +  M+    + GR+ EA  +
Sbjct: 67  DLFSWTLMITCYTRNGEVEKARELFDSLPCSYR--KGVACWNAMISGYVKKGRVNEAKRL 124

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              M  + +L  W ++L     +  + L     +  +E++     +  L+ D +   G
Sbjct: 125 FDEMPVK-NLISWNSMLAGYTQNRKMRL---GLEFFNEMDERDVVSWNLMVDGFIQVG 178



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  LH  ++  G      +   LIT Y +C  I  A ++F+ I   ++  W +L G
Sbjct: 431 ALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIG 490

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFG 211
            YA  GY +EA+ +F EM  +G+  +      +L AC H   +  G K+   + K ++  
Sbjct: 491 GYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIE 550

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
             A   + ++D+  + G +++A ++   M
Sbjct: 551 PLAEHYACMVDLLGRVGRLDEAFEIVRGM 579



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 14/132 (10%)

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQ 470
           M+E+NTVT+NSMI   A +G  + A  LF++M  R   + +S+  +++   H G  +   
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRR---NLVSWNTMVSGYLHNGKFDEAY 57

Query: 471 RLFNMMQEKYKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTM--STEPDLFVWGALLG 526
           +LF        IMPR +   +  M+    R G + +A E+  ++  S    +  W A++ 
Sbjct: 58  KLF-------VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMIS 110

Query: 527 ACKNHGNIELAE 538
                G +  A+
Sbjct: 111 GYVKKGRVNEAK 122


>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
          Length = 523

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 262/453 (57%), Gaps = 31/453 (6%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM----HIQGLKQNIFVIPS 184
           I HA ++FD+IP+ +   +  L    A     ++AV+++  M       G++ +    P 
Sbjct: 28  IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL+AC  +    TG ++H+ V+K    +DAFV ++LI M++ CG++  A  +FD    +D
Sbjct: 88  VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 147

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
            VA +AM++G  +RG    A +L +E        ++V+WN +I+ ++K GD  +  +LF 
Sbjct: 148 AVAWSAMITGCARRGDIGAARDLFDECPVK----DLVSWNVMITAYAKRGDMALARELFD 203

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +     E DVVSW  +ISG V    +  A + F++M   G  P   T+ S+L ACA + 
Sbjct: 204 QV----PERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSG 259

Query: 365 NMRRGKEIH----------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           ++  G+ +H          G  +V+G        +AL+DMYAKCG +  A  +F  M ++
Sbjct: 260 DLDVGQRLHSSLSDMFSRNGFPVVLG--------NALIDMYAKCGSMKSAHEVFWSMRDK 311

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           +  TWNS++ G A HG+  E+I++F +M + K + D ++F AVL AC H G+V+ G+  F
Sbjct: 312 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 371

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           N+MQ KY++ P  +HY C+VD+LGRAG L EA+E I TM  EP+  +W  LL AC+ HG 
Sbjct: 372 NLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGE 431

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           IELA+ A + L +   + + + +LL+++YA+ G
Sbjct: 432 IELAKHANRQLLKARNDESGDYVLLSNIYASVG 464



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 8/246 (3%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +IT Y +  ++  AR LFD++P+ ++  W  +   Y R G H  A+ +F +M   G K +
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD 244

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV---SSLIDMYSKCGSVEKAKK 235
           I  + S+L AC    D+  G+++HS  L   F  + F V   ++LIDMY+KCGS++ A +
Sbjct: 245 IVTMLSLLSACADSGDLDVGQRLHS-SLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHE 303

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           VF  M +KD+   N++V G    G   E++++ E++   +V+P+ +T+  ++   S  G 
Sbjct: 304 VFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGM 363

Query: 296 QVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                + F LM+ K  VEP++  +  ++  L       EAF+    M  +   P S    
Sbjct: 364 VDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCE---PNSVIWR 420

Query: 355 SILPAC 360
           ++L AC
Sbjct: 421 TLLSAC 426



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 152/373 (40%), Gaps = 74/373 (19%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A  +G  +HA ++ +G      +   LI  +  C N+  A  LFD   + +   W A+  
Sbjct: 97  AGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMIT 156

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             ARRG    A  +F E  ++                                       
Sbjct: 157 GCARRGDIGAARDLFDECPVK--------------------------------------- 177

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    + +I  Y+K G +  A+++FD++ E+D+V+ N M+SGYV+ G    AL L E++ 
Sbjct: 178 DLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQ 237

Query: 273 TPRVKPNVVTWNTLISGFSKSGD----QVMVSKLFQLMRAKGV----------------- 311
               KP++VT  +L+S  + SGD    Q + S L  +    G                  
Sbjct: 238 RMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGS 297

Query: 312 ------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                       + DV +W S++ GL  +    E+ D F++ML     P   T  ++L A
Sbjct: 298 MKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIA 357

Query: 360 CASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
           C+    + +G+E          VE ++     +VDM  + G + EA    D M  E N+V
Sbjct: 358 CSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSV 417

Query: 418 TWNSMIFGCANHG 430
            W +++  C  HG
Sbjct: 418 IWRTLLSACRVHG 430


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 162/506 (32%), Positives = 277/506 (54%), Gaps = 32/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G  LHA  +         + T  +  Y +C ++  A+ +F+ +PK ++  + A+  
Sbjct: 292 ALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIV 351

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              R     EA+  F  +   GL  N   +     AC  +     G ++HSL +K +  +
Sbjct: 352 GCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRS 411

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V +S++DMY KC ++ +A  +FDEM  +D V+ NA+++ + Q G   E LNL   + 
Sbjct: 412 NICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASML 471

Query: 273 TPRVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLM 306
             R++P+  T+ +++   S      SG ++                     M  K   + 
Sbjct: 472 RLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIE 531

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            AK +     +  +VSW ++I+G      +++A   F EML     P + T + +L ACA
Sbjct: 532 EAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACA 591

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A++  GK+IHG  I + +  D+++ S LVDMY+KCG + ++  +F+K   ++ VTWN+
Sbjct: 592 NLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNA 651

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G A HG  +EA+  F +M+ E  + +H +F ++L AC H+G ++ G   FN M  +Y
Sbjct: 652 MICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEY 711

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            + P+ EHY+CM+D++GR+GR++EA ++I+ M  E D  +W  LL  CK HGNIE+AE A
Sbjct: 712 GLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKA 771

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
              + +LEPE ++  +LL+++YA+AG
Sbjct: 772 TNAILQLEPEDSSACILLSNIYADAG 797



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/497 (24%), Positives = 225/497 (45%), Gaps = 49/497 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +H  ++  G  +     + L+  Y +C+ +  +  +F EIP  N   W A+     +
Sbjct: 195 GIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQ 254

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              H   + +F EM   G+  +  +  SV ++C  LS +  G ++H+  LK  FG+D  V
Sbjct: 255 NDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITV 314

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE------- 269
            ++ +DMY+KCGS+  A+++F+ + +  +   NA++ G V+     EAL   +       
Sbjct: 315 GTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGL 374

Query: 270 ---EIG-------------------------TPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
              EI                             ++ N+   N+++  + K         
Sbjct: 375 GFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACC 434

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M  +    D VSW +VI+    N   +E  + F  ML     P   T  S+L AC+
Sbjct: 435 MFDEMERR----DAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACS 490

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S   +  G EIH   I  G+  D  V  AL+DMY KCG I EA+ + D++ ++  V+WN+
Sbjct: 491 SQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNA 550

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G     + ++A   F +M +   K D+ ++  VL AC ++  V LG+++   +    
Sbjct: 551 IIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQI---I 607

Query: 481 KIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           K+   ++ Y  + +VD+  + G + ++  ++   +   D   W A++     HG   L E
Sbjct: 608 KLELHSDVYITSTLVDMYSKCGNMQDS-ALVFEKAPNKDFVTWNAMICGYAQHG---LGE 663

Query: 539 IAAKHLSELEPESAANN 555
            A  +   ++ E+   N
Sbjct: 664 EALGYFERMQLENVRPN 680



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 143/576 (24%), Positives = 251/576 (43%), Gaps = 106/576 (18%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI------------- 139
           +L+ GK  HA++IVSG      I+  L+  Y  C ++++A  +F+++             
Sbjct: 58  SLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMIS 117

Query: 140 ------------------PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ---GLKQN 178
                             PK ++  W ++   + + G  ++++ VF +M      G  Q 
Sbjct: 118 GYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQT 177

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F +  VLKAC  L D G G ++H L+++  F  D    S+L+DMY+KC  ++ + K+F 
Sbjct: 178 TFAV--VLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFS 235

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI---SGFS--KS 293
           E+  K+ V  +A+++G VQ       L L +E+    +  +   + ++    +G S  K 
Sbjct: 236 EIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKV 295

Query: 294 GDQV---------------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVH 327
           G Q+                     M +K   L  A+ +     +  +  + ++I G V 
Sbjct: 296 GTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVR 355

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N    EA   F+ +L  G      ++S    ACAS      G+++H  ++   +  ++ V
Sbjct: 356 NEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICV 415

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
            ++++DMY KC  +SEA  +FD+M  R+ V+WN++I     +G  +E + LF  M   R 
Sbjct: 416 ANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRM 475

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFN-------------------------MMQEKYK 481
           + D  ++ +VL AC     +  G  + N                         M++E  K
Sbjct: 476 EPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKK 535

Query: 482 IMPRTEHYACMVDL--------LGRAGRLAEA--YEMIKTMSTEPDLFVWGALLGACKNH 531
           I  R E    MV          L +    A +  YEM+K MS +PD F +  +L AC N 
Sbjct: 536 IHDRIEQQT-MVSWNAIIAGFTLLKHSEDAHSFFYEMLK-MSVKPDNFTYAIVLDACANL 593

Query: 532 GNIELAEIAAKHLSELEPESAAN-NMLLTDLYANAG 566
            ++ L +     + +LE  S       L D+Y+  G
Sbjct: 594 ASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCG 629



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 164/334 (49%), Gaps = 10/334 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL SG  +H ++I SGL   + +   LI  Y +C  I  A+ + D I +  +  W A+ 
Sbjct: 493 QALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAII 552

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +    + ++A + F+EM    +K + F    VL AC +L+ +G G++IH  ++K    
Sbjct: 553 AGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELH 612

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D ++ S+L+DMYSKCG+++ +  VF++   KD V  NAM+ GY Q GL  EAL   E +
Sbjct: 613 SDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERM 672

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
               V+PN  T+ +++   +  G        F  M  + G+EP +  ++ +I  +  +  
Sbjct: 673 QLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGR 732

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA    +EM    F   +    ++L  C    N+   ++     + +  E D      
Sbjct: 733 ISEALKLIQEM---PFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPE-DSSACIL 788

Query: 391 LVDMYAKCGF---ISEARTL--FDKMSERNTVTW 419
           L ++YA  G    +SE R +  ++K+ +    +W
Sbjct: 789 LSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSW 822



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/452 (21%), Positives = 200/452 (44%), Gaps = 73/452 (16%)

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPS-------VLKACGHLSDIGTGEKIHSLVLK 207
           A R  + + + +F    I  L+QN   +P+       +++ C   + +  G++ H+ ++ 
Sbjct: 12  ASRILYNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIV 71

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI---------------------- 245
             F  D ++ + L+ MY +C  +  A KVF++M ++D+                      
Sbjct: 72  SGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEF 131

Query: 246 ---------VAMNAMVSGYVQRGLATEALNLVEEIG-TPRVKPNVVTWNTLISGFSKSGD 295
                    V+ N+M+SG++Q G   +++++  ++G +  V  +  T+  ++   S   D
Sbjct: 132 FYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLED 191

Query: 296 QVMVSKLFQLMRAKGVEPDVVS-------------------------------WTSVISG 324
             +  ++  L+   G   DVV+                               W+++I+G
Sbjct: 192 GGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAG 251

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
            V N  +    + FKEM   G   + +  +S+  +CA  + ++ G ++H  A+      D
Sbjct: 252 CVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSD 311

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN-QME 443
           + V +A +DMYAKCG +++A+ +F+ + + +   +N++I GC  +    EA++ F   ++
Sbjct: 312 ITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLK 371

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
                + +S +   +AC  +   +L  R  + +  K  +         ++D+ G+   L+
Sbjct: 372 SGLGFNEISLSGAFSACASIK-GDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALS 430

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           EA  M   M    D   W A++ A + +GN E
Sbjct: 431 EACCMFDEMERR-DAVSWNAVIAAHEQNGNEE 461


>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
          Length = 521

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 167/516 (32%), Positives = 276/516 (53%), Gaps = 49/516 (9%)

Query: 59  IFIEAHYK-MPIISRSFHLSPAAY-SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA 116
           I    HY   P+      LSPA Y +  ++ +I   A ++GK +HA +I +G      I+
Sbjct: 13  ILPSNHYSTFPLKQNVSSLSPAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPDLNIS 72

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
            KL+  + +C  + +AR +FDE+PK  +  +  +   Y + G  +E + +   M   G K
Sbjct: 73  IKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSYSGEK 132

Query: 177 QNIFVIPSVLKACGHLSDIGTGEK-----IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
            + + +  VLKA           +     +H+ ++K     D  ++++L+D Y K G +E
Sbjct: 133 ADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLE 192

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-GTPRVKPNVVTWNTLISGF 290
            A+ VF+ M ++++V   +M+SGY+ +G   +A    EEI  T +VK ++V +N ++ GF
Sbjct: 193 SARTVFETMKDENVVCCTSMISGYMNQGFVEDA----EEIFNTTKVK-DIVVYNAMVEGF 247

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           S+SG+                                      + D +  M   GF P  
Sbjct: 248 SRSGETA----------------------------------KRSVDMYISMQRAGFHPNI 273

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +T +S++ AC+   +   G+++H   +  GV   + + S+L+DMYAKCG I++AR +FD+
Sbjct: 274 STFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQ 333

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELG 469
           M E+N  +W SMI G   +G  +EA+ELF +M+E R + ++++F   L+AC H GLV+ G
Sbjct: 334 MQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKG 393

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             +F  MQ  Y + P+ EHYAC+VDL+GRAG L +A+E  + M   PD  +W ALL +C 
Sbjct: 394 YEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCN 453

Query: 530 NHGNIELAEIAAKHLSELEPESAANNML-LTDLYAN 564
            HGN+ELA IAA  L +L  +      L L+++YA+
Sbjct: 454 LHGNVELASIAASELFKLNADKRPGAYLALSNVYAS 489


>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
          Length = 788

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 271/478 (56%), Gaps = 4/478 (0%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R ++ GK  HA  IV+GL     + T ++ FY +   + +A M+FD + + ++  W  L 
Sbjct: 248 RGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLI 307

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y ++G   +A+ +   M ++ L+ +   + +++ A     ++  G+++    ++H F 
Sbjct: 308 SGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFE 367

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  + S+ +DMY+KCGS+  AKKVFD  VEKD++  N +++ Y   GL+ EAL L  ++
Sbjct: 368 SEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDM 427

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
               V PN++TWN++I    ++G      ++F  M++ G+ P+++SWT++++GLV N C+
Sbjct: 428 QLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCS 487

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR--S 389
           +EA +  ++M   G  P S +I+  L ACA  A++  G+ IHG  I+  ++    V   +
Sbjct: 488 EEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGRSIHG-YIIRNLQHSSSVSFVT 546

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           +LVDMYAKCG I++A   F          +N+MI   A +G   EAI L+ ++E+   K 
Sbjct: 547 SLVDMYAKCGDINQAEKAFGSKLYDELPLYNAMISAYALYGNMKEAIALYRRLEDMAIKP 606

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++FT++L+AC H G +     +F  M  K+ + P  EHY  MVDLL  +G   +A E+
Sbjct: 607 DSITFTSLLSACSHAGDIVQAINIFTEMVSKHGMKPCLEHYGLMVDLLASSGETNKALEL 666

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           IK M  +PD  +  +L+ +       EL +  +K L E EPE++ N + +++ +A  G
Sbjct: 667 IKEMPYKPDARMIQSLVASNNKQHKTELVDYLSKQLLESEPENSGNYVTISNAFAIEG 724



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/534 (29%), Positives = 266/534 (49%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +G+ +HA+++ +G   AR   I TKL+ FY +C  I
Sbjct: 24  RNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGDFYARNQYIETKLLIFYAKCDAI 83

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A+ LF  +   N+  W A+ G   R G  + A+T F EM   G+  + +V+P+V KAC
Sbjct: 84  EVAQNLFSRLRVRNVFSWAAIIGLKCRIGLCEGALTGFVEMIENGVLPDNYVVPNVCKAC 143

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  ++K       FV SSL DMY KCG +  A+KVFD++ E+++VA N
Sbjct: 144 GALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNVVAWN 203

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQ-------- 296
           A++ GYVQ G+  EA+ L+ ++    ++P  VT +T +S  +     + G Q        
Sbjct: 204 ALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEGKQSHAIAIVN 263

Query: 297 ------------------VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
                             V + +  +++  + +E DVV+W  +ISG V     D+A    
Sbjct: 264 GLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDDAIHMC 323

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           K M  +     S T+S+++ A A   N++ GKE+    I    E ++ + S  VDMYAKC
Sbjct: 324 KLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFESEIVLASTAVDMYAKC 383

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD   E++ + WN+++   A+ G   EA+ LF  M+ E    + +++ +++
Sbjct: 384 GSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDMQLESVPPNMITWNSII 443

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V+  + +F  MQ    I P    +  M++ L + G   EA   ++ M     
Sbjct: 444 LSLLRNGQVDEAKEMFLQMQSS-GIFPNLISWTTMMNGLVQNGCSEEAINFLRKMQESGL 502

Query: 515 EPDLFVWGALLGACKNHGNIELAE-IAAKHLSELEPESAANNML-LTDLYANAG 566
            P+ F     L AC +  ++     I    +  L+  S+ + +  L D+YA  G
Sbjct: 503 RPNSFSITVALSACAHLASLNFGRSIHGYIIRNLQHSSSVSFVTSLVDMYAKCG 556



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 124/545 (22%), Positives = 243/545 (44%), Gaps = 113/545 (20%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  L+ +GL     +A+ L   Y +C  ++ AR +FD+IP+ N+  W AL   Y +
Sbjct: 152 GRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNVVAWNALMVGYVQ 211

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  +M  +G++     + + L A  ++  I  G++ H++ + +    D  +
Sbjct: 212 NGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEGKQSHAIAIVNGLEMDNIL 271

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S+++ Y K G VE A+ +FD M+EKD+V  N ++SGYVQ+GL  +A+++ + +    +
Sbjct: 272 GTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDDAIHMCKLMRLENL 331

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           + + VT +TL+S  +++     G +V                     M +K   ++ AK 
Sbjct: 332 RYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKK 391

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                VE D++ W ++++    +  + EA   F +M  +   P   T +SI+ +      
Sbjct: 392 VFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDMQLESVPPNMITWNSIILSL----- 446

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER----NTVTWNS 421
           +R G+                              + EA+ +F +M       N ++W +
Sbjct: 447 LRNGQ------------------------------VDEAKEMFLQMQSSGIFPNLISWTT 476

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+ G   +G  +EAI    +M+E   + +  S T  L+AC H+  +  G+ +   +    
Sbjct: 477 MMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGRSIHGYIIRNL 536

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEA----------------------------------Y 506
           +          +VD+  + G + +A                                  Y
Sbjct: 537 QHSSSVSFVTSLVDMYAKCGDINQAEKAFGSKLYDELPLYNAMISAYALYGNMKEAIALY 596

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELA-----EIAAKHLSELEPESAANNMLLTDL 561
             ++ M+ +PD   + +LL AC + G+I  A     E+ +KH   ++P    +  L+ DL
Sbjct: 597 RRLEDMAIKPDSITFTSLLSACSHAGDIVQAINIFTEMVSKH--GMKP-CLEHYGLMVDL 653

Query: 562 YANAG 566
            A++G
Sbjct: 654 LASSG 658



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 213/440 (48%), Gaps = 47/440 (10%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G  +EA+ +  EM  + ++    +   +L+ C +  D+ TG++IH+ +LK+   +  +
Sbjct: 7   KHGEIREALRLVKEMEFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGDFYARN 66

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVE 269
            ++ + L+  Y+KC ++E A+ +F  +  +++ +  A++    + GL   AL     ++E
Sbjct: 67  QYIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKCRIGLCEGALTGFVEMIE 126

Query: 270 EIGTPR--VKPNV------VTWNTLISG----FSKSG--DQVMVSKLFQLMRAK-GV--- 311
               P   V PNV      + W     G      K+G  D V V+     M  K GV   
Sbjct: 127 NGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLND 186

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E +VV+W +++ G V N  N+EA     +M  +G  PT  T+S+ L A A+
Sbjct: 187 ARKVFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASAN 246

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H  AIV G+E D  + +++++ Y K G +  A  +FD+M E++ VTWN +
Sbjct: 247 IRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLL 306

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL----FNMMQ 477
           I G    G  D+AI +   M  E  + D ++ + +++A      ++LG+ +         
Sbjct: 307 ISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCF 366

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E   ++  T      VD+  + G + +A ++  + + E DL +W  LL A  + G   L+
Sbjct: 367 ESEIVLASTA-----VDMYAKCGSIVDAKKVFDS-TVEKDLILWNTLLAAYADSG---LS 417

Query: 538 EIAAKHLSELEPESAANNML 557
             A +   +++ ES   NM+
Sbjct: 418 GEALRLFYDMQLESVPPNMI 437



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 15/238 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIA--TKLITFYTECQNIHHARM-----LFDEIPKTNIH 145
           +L  G+ +H   I+  L   + ++  T L+  Y +C +I+ A       L+DE+P  N  
Sbjct: 521 SLNFGRSIHG-YIIRNLQHSSSVSFVTSLVDMYAKCGDINQAEKAFGSKLYDELPLYN-- 577

Query: 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-L 204
              A+  AYA  G  +EA+ ++  +    +K +     S+L AC H  DI     I + +
Sbjct: 578 ---AMISAYALYGNMKEAIALYRRLEDMAIKPDSITFTSLLSACSHAGDIVQAINIFTEM 634

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V KH           ++D+ +  G   KA ++  EM  K    M   +     +   TE 
Sbjct: 635 VSKHGMKPCLEHYGLMVDLLASSGETNKALELIKEMPYKPDARMIQSLVASNNKQHKTEL 694

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           ++ + +        N   + T+ + F+  G    V K+ ++M+AKG++     SW  +
Sbjct: 695 VDYLSKQLLESEPENSGNYVTISNAFAIEGSWDEVVKMREMMKAKGLKKKPGCSWIQI 752


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/491 (35%), Positives = 261/491 (53%), Gaps = 46/491 (9%)

Query: 83  ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI---HHARMLFDEI 139
           E + I  R  +L   K +HAQ+ +  L + + + TKL+   T   ++    + R+LF ++
Sbjct: 10  EVVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQL 69

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
              N   W AL  AYA RG   +A++ +  M  + +    F   ++  AC  +     G 
Sbjct: 70  HTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGA 129

Query: 200 KIHS-LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           ++H+  +L   F +D +V +++IDMY KCGS+  A+ VFDEM E+D              
Sbjct: 130 QLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERD-------------- 175

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                V++W  LI  +++ GD      LF  +  K    D+V+W
Sbjct: 176 ---------------------VISWTGLIVAYTRIGDMRAARDLFDGLPVK----DMVTW 210

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           T++++G   N    +A + F+ +  +G      T+  ++ ACA     +    I   A  
Sbjct: 211 TAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAES 270

Query: 379 --MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
              GV  ++ V SAL+DMY+KCG + EA  +F  M ERN  +++SMI G A HG    AI
Sbjct: 271 SGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAI 330

Query: 437 ELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
           +LF  M E   K +H++F  VLTAC H GLV+ GQ+LF  M++ Y + P  E YACM DL
Sbjct: 331 KLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDL 390

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           L RAG L +A ++++TM  E D  VWGALLGA   HGN ++AEIA+K L ELEP++  N 
Sbjct: 391 LSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNY 450

Query: 556 MLLTDLYANAG 566
           +LL++ YA+AG
Sbjct: 451 LLLSNTYASAG 461


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 170/505 (33%), Positives = 270/505 (53%), Gaps = 39/505 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G  +HA ++ S       +A  LI  Y     +  A  +F  +   +   W ++   
Sbjct: 334 IKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSG 393

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + + G + EA+  +HEM   G K ++  + S++ A     +   G +IH+  +K+   +D
Sbjct: 394 FVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSD 453

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +SL+DMY+K  S++    +FD+M +KD+V+   +++G+ Q G  + AL L  E+  
Sbjct: 454 LQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQL 513

Query: 274 PRVKPNV----------------------------------VTWNTLISGFSKSGDQVMV 299
             +  +V                                  V  N ++  + + G+    
Sbjct: 514 EGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYA 573

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           +++F+L+  K    DVVSWTS+IS  VHN   +EA + F  M   G  P S ++ SIL A
Sbjct: 574 ARMFELIEFK----DVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSA 629

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            AS + +++GKEIHG  I  G   +  + S LVDMYA+CG + ++R +F+ +  ++ V W
Sbjct: 630 AASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLW 689

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            SMI     HG    AI+LF +ME+     DH++F AVL AC H GL+  G+R    M+ 
Sbjct: 690 TSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKY 749

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +Y++ P  EHY C+VDLLGRA  L EAY+ +K M  EP   VW ALLGAC+ H N EL E
Sbjct: 750 EYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGE 809

Query: 539 IAAKHLSELEPESAANNMLLTDLYA 563
           IAA+ L E++PE+  N +L++++YA
Sbjct: 810 IAAQKLLEMDPENPGNYVLVSNVYA 834



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/513 (28%), Positives = 251/513 (48%), Gaps = 49/513 (9%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDE 138
           AYS  +E+    +AL  G+ +HA +I S  L     ++T+L+  Y +C  +  A  LFD 
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P   I  W A+ GAY   G    ++ ++ EM + G+  +    P +LKACG L D   G
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQ 257
            ++H L +K  + +  FV +S++ MY+KC  +  A+++FD M EK D+V+ N+M+S Y  
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTW---------------------------------- 283
            G + EAL L  E+    + PN  T+                                  
Sbjct: 296 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 355

Query: 284 -NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
            N LI+ +++ G     + +F  M     + D +SW S++SG V N    EA   + EM 
Sbjct: 356 ANALIAMYARFGKMGEAANIFYNMD----DWDTISWNSMLSGFVQNGLYHEALQFYHEMR 411

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
             G  P    + SI+ A A + N   G +IH  A+  G++ DL V ++LVDMYAK   + 
Sbjct: 412 DAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMK 471

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACC 461
               +FDKM +++ V+W ++I G A +G    A+ELF +++ E   LD +  +++L AC 
Sbjct: 472 YMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS 531

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
            + L+   + + + +  K   +        +VD+ G  G +  A  M + +  + D+  W
Sbjct: 532 GLKLISSVKEIHSYIIRKG--LSDLVLQNGIVDVYGECGNVDYAARMFELIEFK-DVVSW 588

Query: 522 GALLGACKNHGNIELAEIAAKHL---SELEPES 551
            +++ +C  H  +    +   HL   + +EP+S
Sbjct: 589 TSMI-SCYVHNGLANEALELFHLMKETGVEPDS 620


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 167/511 (32%), Positives = 264/511 (51%), Gaps = 36/511 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +++  G ++H +++ S       +   L+  Y     +  AR +FD +   ++  W  + 
Sbjct: 131 KSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMI 190

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y R GY  +A+ +F  M  +G+  +   I S+L  CGHL  +  G  +H LV +   G
Sbjct: 191 SGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLG 250

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V ++L++MY KCG +++A+ VF  M  +D++    M++GY++ G    AL L   +
Sbjct: 251 DKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLM 310

Query: 272 GTPRVKPNVVTWNTLIS---------------GFS---KSGDQVMVSKLFQLMRAKGVEP 313
               V+PN VT  +L+S               G++   K    +++      M AK    
Sbjct: 311 QFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHI 370

Query: 314 DVV-------------SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           D+               W+++I+G V N    +A D FK M  +   P  AT++S+LPA 
Sbjct: 371 DLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAY 430

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----RNT 416
           A+ A++R+   IH      G    L   + LV +Y+KCG +  A  +F+ + E    ++ 
Sbjct: 431 ATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDV 490

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V W ++I G   HG    A+++F +M       + ++FT+ L AC H GLVE G  LF+ 
Sbjct: 491 VLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSF 550

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M E YK + R+ HY C+VDLLGRAGRL EAY +I T+  EP   +WGALL AC  H N++
Sbjct: 551 MLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGALLAACVTHENVQ 610

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L E+AA  L ELEPE+  N +LL ++YA  G
Sbjct: 611 LGEMAANKLFELEPENTGNYVLLANIYAALG 641



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 238/496 (47%), Gaps = 41/496 (8%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LS   Y   +  Y   +++   K LH  +I  G      I + L   Y  C +I +AR L
Sbjct: 13  LSVKQYQSLLNHYAATQSISKTKALHCHVITGGRVS-GHILSTLSVTYALCGHIAYARKL 71

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK--QNIFVIPSVLKACGHLS 193
           FDE+P++++  +  +   Y R G + +A+ VF  M  +G+K   + +  P V KA G L 
Sbjct: 72  FDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELK 131

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
            I  G  IH  +L+  FG D +V ++L+ MY   G VE A+ VFD M  +D+++ N M+S
Sbjct: 132 SISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMIS 191

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL--ISGFSKS----------------GD 295
           GY + G   +AL + + +    V P+  T  ++  + G  K                 GD
Sbjct: 192 GYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGD 251

Query: 296 QV--------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
           ++        M  K  ++  A+ V       DV++WT +I+G + +   + A +  + M 
Sbjct: 252 KIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQ 311

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
            +G  P + TI+S++ AC  A  +  GK +HG AI   V  D+ + ++L+ MYAKC  I 
Sbjct: 312 FEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHID 371

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACC 461
               +F   S  +T  W+++I GC  +    +A++LF +M  E  + +  +  ++L A  
Sbjct: 372 LCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPA-- 429

Query: 462 HVGLVELGQRL-FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM---IKTMSTEPD 517
           +  L +L Q +  +    K   M   +    +V +  + G L  A+++   I+      D
Sbjct: 430 YATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKD 489

Query: 518 LFVWGALLGACKNHGN 533
           + +WGAL+     HG+
Sbjct: 490 VVLWGALISGYGMHGD 505



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 130/266 (48%), Gaps = 11/266 (4%)

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
           RV  ++++  TL   ++  G      KLF  M     +  ++S+  VI   V +    +A
Sbjct: 46  RVSGHILS--TLSVTYALCGHIAYARKLFDEMP----QSSLLSYNIVIRMYVRDGLYHDA 99

Query: 335 FDTFKEMLSQGF--CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            + F  M+S+G    P   T   +  A     ++  G  IHG  +      D +V++AL+
Sbjct: 100 INVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALL 159

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
            MY   G +  AR +FD M  R+ ++WN+MI G   +GY ++A+ +F+ M  E    DH 
Sbjct: 160 AMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHA 219

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +  ++L  C H+  +E+G+ +  +++EK ++  + E    +V++  + GR+ EA  +   
Sbjct: 220 TIVSMLPVCGHLKGLEMGRNVHKLVEEK-RLGDKIEVKNALVNMYLKCGRMDEARFVFGR 278

Query: 512 MSTEPDLFVWGALLGACKNHGNIELA 537
           M    D+  W  ++      G++E A
Sbjct: 279 MERR-DVITWTCMINGYIEDGDVENA 303


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 274/502 (54%), Gaps = 32/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G++ HA  I     R   + + L+  Y +      AR +FD +P+ N   W  +   YA 
Sbjct: 127 GRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYAS 186

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           +    EA+ +F  M  +   +N FV  SVL A      +  G++IH + +K+   +   V
Sbjct: 187 QKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSV 246

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+ MY+KCGS++ A + F+   +K+ +  +AM++GY Q G + +AL L   +    +
Sbjct: 247 GNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGI 306

Query: 277 KPNVVTWNTLIS-----GFSKSGDQV---------------------MVSKLFQLMRA-K 309
           +P+  T+  +I+     G +  G QV                     M +K   ++ A K
Sbjct: 307 RPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARK 366

Query: 310 GV----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           G     EPD+V WTS+I G V N  N++A   +  M  +G  P   T++S+L AC+S A 
Sbjct: 367 GFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAA 426

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + +GK+IH   +  G   ++ + SAL  MYAKCG + +   +F +M  R+ ++WN+MI G
Sbjct: 427 LEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISG 486

Query: 426 CANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            + +G   EA+ELF +M+ E  K D+++F  +L+AC H+GLVE G   F MM +++ + P
Sbjct: 487 LSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDP 546

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           R EHYACMVD+L RAG+L EA E  ++ + +  + +W  +LGAC+N+ N EL   A + L
Sbjct: 547 RVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKL 606

Query: 545 SELEPESAANNMLLTDLYANAG 566
            EL  + ++  +LL+ +Y+  G
Sbjct: 607 MELGSQESSAYVLLSSIYSALG 628



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 233/515 (45%), Gaps = 68/515 (13%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           Y  +R+LQ GK LHAQ+I S  +    IA  L+  Y +CQ +  A+ +F+ I   ++  W
Sbjct: 16  YTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSW 74

Query: 148 IALTGAYARRGYHQEA--VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
             +   Y++ G    +  + +F  M  +    N      V  A   L D   G   H++ 
Sbjct: 75  NCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVA 134

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K     D FV SSL++MY K G   +A+KVFD M E++ V+   M+SGY  + LA EAL
Sbjct: 135 IKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEAL 194

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQ-------------VMVSKLFQLMR 307
            L   +       N   + +++S  +      +G Q             V V      M 
Sbjct: 195 GLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMY 254

Query: 308 AK-------------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           AK               + + ++W+++I+G   +  +D+A   F  M   G  P+  T  
Sbjct: 255 AKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFV 314

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
            ++ AC+       GK++H   + +G E  ++V +ALVDMYAKC  I +AR  FD + E 
Sbjct: 315 GVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEP 374

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL- 472
           + V W SMI G   +G  ++A+ L+ +ME    L + L+  +VL AC  +  +E G+++ 
Sbjct: 375 DIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIH 434

Query: 473 -----------------FNMMQEK----------YKIMPRTE--HYACMVDLLGRAGRLA 503
                             + M  K          ++ MP  +   +  M+  L + G   
Sbjct: 435 ARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGK 494

Query: 504 EAYEMIKTM---STEPDLFVWGALLGACKNHGNIE 535
           EA E+ + M    T+PD   +  +L AC + G +E
Sbjct: 495 EALELFEEMQLEGTKPDYVTFVNILSACSHMGLVE 529



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 142/279 (50%), Gaps = 6/279 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A   GK +H  L+  G      + T L+  Y +C +I  AR  FD + + +I  W ++ G
Sbjct: 325 AAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIG 384

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G +++A++++  M ++G+  N   + SVLKAC  L+ +  G++IH+  +K+ FG 
Sbjct: 385 GYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGL 444

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  + S+L  MY+KCG ++    VF  M  +D+++ NAM+SG  Q G   EAL L EE+ 
Sbjct: 445 EVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQ 504

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
               KP+ VT+  ++S  S  G        F++M  + G++P V  +  ++  L      
Sbjct: 505 LEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKL 564

Query: 332 DEAFD-TFKEMLSQGFCPTSATISSILPACASAANMRRG 369
            EA + T    +  G C        IL AC +  N   G
Sbjct: 565 KEAIEFTESATIDHGMC----LWRIILGACRNYRNYELG 599



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 136/271 (50%), Gaps = 11/271 (4%)

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA--FDTFKEM 341
           N+L++ ++K         +F+ ++ K    DVVSW  +I+G   +  +  +   + F+ M
Sbjct: 44  NSLVNLYAKCQRLREAKFVFERIQNK----DVVSWNCIINGYSQHGPSGSSHVMELFQRM 99

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
            ++   P + T + +  A ++  +   G+  H  AI M    D+ V S+L++MY K G  
Sbjct: 100 RAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLT 159

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTAC 460
            EAR +FD M ERN+V+W +MI G A+     EA+ LF  M  E +  +   FT+VL+A 
Sbjct: 160 PEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL 219

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
               LV  G+++ + +  K  ++        +V +  + G L +A +  +T S++ +   
Sbjct: 220 TLPELVNNGKQI-HCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFET-SSDKNSIT 277

Query: 521 WGALLGACKNHGNIE--LAEIAAKHLSELEP 549
           W A++      G+ +  L   ++ HLS + P
Sbjct: 278 WSAMITGYAQSGDSDKALKLFSSMHLSGIRP 308


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/544 (32%), Positives = 290/544 (53%), Gaps = 33/544 (6%)

Query: 55  LINGIFIEAHYKMPIISRS-FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLT 113
           L+NG+F +A   +  + RS F L+ A+    +     ++  + G  +HA  +  GL  + 
Sbjct: 17  LVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMV 76

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            +A  L+  Y +  ++  +  +FD + + N   W +  G +   G++ + + +F +M   
Sbjct: 77  NLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEH 136

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
            +      + S+L A   L     G ++H   +K +   D FV +SL+DMY+K GS+EKA
Sbjct: 137 NVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKA 196

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-- 291
             +F++M ++++V+ NAM++  VQ G  TEA  LV ++      PN +T   ++   +  
Sbjct: 197 STIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARM 256

Query: 292 ---KSGDQV---------------------MVSKLFQLMRAKGV----EPDVVSWTSVIS 323
              K G Q+                     M SK  QL  A+ +    E D VS+ ++I 
Sbjct: 257 ASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDVSYNTLIL 316

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G   +    E+   FK+M S G    + +    L AC + +  + GKEIH   +   + G
Sbjct: 317 GYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSG 376

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
              + ++L+D+Y K G +  A  +F+K+++++  +WN+MI G   HG  D A ELF  M+
Sbjct: 377 HPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMK 436

Query: 444 -ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
            +    DH+S+ AVL AC H GLV+ G++ F+ M  +  I P+  HYACMVDLLGRAG+L
Sbjct: 437 GDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGRAGQL 495

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
           ++  E+I+ M    +  VWGALLGAC+ HGNIELA+ AA+HL EL+PE +    L+ ++Y
Sbjct: 496 SKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMY 555

Query: 563 ANAG 566
           A  G
Sbjct: 556 AETG 559



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 217/435 (49%), Gaps = 43/435 (9%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P+ ++  W +L  A+   G   +A      M   G   N+  + SV+ ACG   +   G
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
             IH+L +K    T   + ++L+DMY K G VE + +VFD M+E++ V+ N+ +  ++  
Sbjct: 61  LSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNA 120

Query: 259 GLATEALNLVEEIGTPRVKPNVVTW----------------------------------- 283
           G   + L +  ++    V P  +T                                    
Sbjct: 121 GFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVA 180

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           N+L+  ++K G     S +F+ M+ +    +VVSW ++I+ LV N    EAF    +M  
Sbjct: 181 NSLVDMYAKFGSLEKASTIFEQMKDR----NVVSWNAMIANLVQNGAETEAFRLVTDMQK 236

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
            G CP S T+ ++LPACA  A+++ GK+IH  +I  G+  DL + +AL+DMY+KCG +S 
Sbjct: 237 SGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSL 296

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCH 462
           AR +F++ SE++ V++N++I G +   +C E++ LF QM       D +SF   L+AC +
Sbjct: 297 ARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTN 355

Query: 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
           + + + G+ +  ++  +  +         ++DL  + G L  A ++   + T+ D+  W 
Sbjct: 356 LSVFKHGKEIHCVLVRRL-LSGHPFLSNSLLDLYTKGGMLVTASKIFNKI-TKKDVASWN 413

Query: 523 ALLGACKNHGNIELA 537
            ++     HG I++A
Sbjct: 414 TMILGYGMHGQIDIA 428


>gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
          Length = 841

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 167/516 (32%), Positives = 276/516 (53%), Gaps = 49/516 (9%)

Query: 59  IFIEAHYK-MPIISRSFHLSPAAY-SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA 116
           I    HY   P+      LSPA Y +  ++ +I   A ++GK +HA +I +G      I+
Sbjct: 334 ILPSNHYSTFPLKQNVSSLSPAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPDLNIS 393

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
            KL+  + +C  + +AR +FDE+PK  +  +  +   Y + G  +E + +   M   G K
Sbjct: 394 IKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSYSGEK 453

Query: 177 QNIFVIPSVLKACGHLSDIGTGEK-----IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
            + + +  VLKA           +     +H+ ++K     D  ++++L+D Y K G +E
Sbjct: 454 ADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLE 513

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-GTPRVKPNVVTWNTLISGF 290
            A+ VF+ M ++++V   +M+SGY+ +G   +A    EEI  T +VK ++V +N ++ GF
Sbjct: 514 SARTVFETMKDENVVCCTSMISGYMNQGFVEDA----EEIFNTTKVK-DIVVYNAMVEGF 568

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           S+SG+                                      + D +  M   GF P  
Sbjct: 569 SRSGETA----------------------------------KRSVDMYISMQRAGFHPNI 594

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +T +S++ AC+   +   G+++H   +  GV   + + S+L+DMYAKCG I++AR +FD+
Sbjct: 595 STFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQ 654

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELG 469
           M E+N  +W SMI G   +G  +EA+ELF +M+E R + ++++F   L+AC H GLV+ G
Sbjct: 655 MQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKG 714

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             +F  MQ  Y + P+ EHYAC+VDL+GRAG L +A+E  + M   PD  +W ALL +C 
Sbjct: 715 YEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCN 774

Query: 530 NHGNIELAEIAAKHLSELEPESAANNML-LTDLYAN 564
            HGN+ELA IAA  L +L  +      L L+++YA+
Sbjct: 775 LHGNVELASIAASELFKLNADKRPGAYLALSNVYAS 810


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 170/505 (33%), Positives = 271/505 (53%), Gaps = 39/505 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G  +HA ++ S       +A  LI  Y     +  A  +F  +   +   W ++   
Sbjct: 298 IKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSG 357

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + + G + EA+  +HEM   G K ++  + S++ A     +   G +IH+  +K+   +D
Sbjct: 358 FVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSD 417

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +SL+DMY+K  S++    +FD+M +KD+V+   +++G+ Q G  + AL L  E+  
Sbjct: 418 LQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQL 477

Query: 274 PRVKPNV----------------------------------VTWNTLISGFSKSGDQVMV 299
             +  +V                                  V  N ++  + + G+    
Sbjct: 478 EGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYA 537

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           +++F+L+  K    DVVSWTS+IS  VHN   +EA + F  M   G  P S ++ SIL A
Sbjct: 538 ARMFELIEFK----DVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSA 593

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            AS + +++GKEIHG  I  G   +  + S LVDMYA+CG + ++R +F+ +  ++ V W
Sbjct: 594 AASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLW 653

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            SMI     HG    AI+LF +ME+     DH++F AVL AC H GL+  G+R    M+ 
Sbjct: 654 TSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKY 713

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +Y++ P  EHYAC+VDLLGRA  L EAY+ +K M  EP   VW ALLGAC+ H N EL E
Sbjct: 714 EYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGE 773

Query: 539 IAAKHLSELEPESAANNMLLTDLYA 563
           IAA+ L E++PE+  N +L++++Y+
Sbjct: 774 IAAQKLLEMDPENPGNYVLVSNVYS 798



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/513 (28%), Positives = 251/513 (48%), Gaps = 49/513 (9%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDE 138
           AYS  +E+    +AL  G+ +HA +I S  L     ++T+L+  Y +C  +  A  LFD 
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P   I  W A+ GAY   G    ++ ++ EM + G+  +    P +LKACG L D   G
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG 199

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQ 257
            ++H L +K  + +  FV +S++ MY+KC  +  A+++FD M EK D+V+ N+M+S Y  
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTW---------------------------------- 283
            G + EAL L  E+    + PN  T+                                  
Sbjct: 260 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 319

Query: 284 -NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
            N LI+ +++ G     + +F  M     + D +SW S++SG V N    EA   + EM 
Sbjct: 320 ANALIAMYARFGKMGEAANIFYNMD----DWDTISWNSMLSGFVQNGLYHEALQFYHEMR 375

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
             G  P    + SI+ A A + N   G +IH  A+  G++ DL V ++LVDMYAK   + 
Sbjct: 376 DAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMK 435

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACC 461
               +FDKM +++ V+W ++I G A +G    A+ELF +++ E   LD +  +++L AC 
Sbjct: 436 YMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS 495

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
            + L+   + + + +  K   +        +VD+ G  G +  A  M + +  + D+  W
Sbjct: 496 GLKLISSVKEIHSYIIRKG--LSDLVLQNGIVDVYGECGNVDYAARMFELIEFK-DVVSW 552

Query: 522 GALLGACKNHGNIELAEIAAKHL---SELEPES 551
            +++ +C  H  +    +   HL   + +EP+S
Sbjct: 553 TSMI-SCYVHNGLANEALELFHLMKETGVEPDS 584


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/502 (31%), Positives = 267/502 (53%), Gaps = 33/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HA +   G      I+   +T Y + Q++ +    F  +   N+     L   +  
Sbjct: 109 GESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCD 168

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                +   +  ++ ++G + N++   S+LK C    D+  G+ IH  V+K     D+ +
Sbjct: 169 TETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHL 228

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SL+++Y+KCGS   A KVF E+ E+D+V+  A+++G+V  G  +  L +  ++     
Sbjct: 229 WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGF 287

Query: 277 KPNVVTWNTLISGFSKSGD---------QVMVSKL---------FQLMRAKG-------- 310
            PN+ T+ +++   S   D         Q++ + L            M AK         
Sbjct: 288 NPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAET 347

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                ++ D+ +WT +++G   +   ++A   F +M  +G  P   T++S L  C+  A 
Sbjct: 348 IFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIAT 407

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G+++H  AI  G  GD+ V SALVDMYAKCG + +A  +FD +  R+TV+WN++I G
Sbjct: 408 LDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICG 467

Query: 426 CANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            + HG   +A++ F  M +E    D ++F  VL+AC H+GL+E G++ FN + + Y I P
Sbjct: 468 YSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITP 527

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             EHYACMVD+LGRAG+  E    I+ M    ++ +W  +LGACK HGNIE  E AA  L
Sbjct: 528 TIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKL 587

Query: 545 SELEPESAANNMLLTDLYANAG 566
            ELEPE  +N +LL++++A  G
Sbjct: 588 FELEPEIDSNYILLSNMFAAKG 609



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 237/514 (46%), Gaps = 77/514 (14%)

Query: 103 QLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQE 162
           ++I +G+   + + + L+  Y +C+++  AR + +E+P  ++ +W     +       QE
Sbjct: 14  RVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQE 73

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
           AV +F+ M    ++ N F+  S++ A   L D   GE IH+ V K+ F +D  + ++ + 
Sbjct: 74  AVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVT 133

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT 282
           MY K  SVE   + F  M+ +++ + N ++SG+       +   ++ ++     +PN+ T
Sbjct: 134 MYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYT 193

Query: 283 -----------------------------------WNTLISGFSKSGDQVMVSKLFQLMR 307
                                              WN+L++ ++K G      K+F    
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF---- 249

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            +  E DVVSWT++I+G V           F +ML++GF P   T  SIL +C+S +++ 
Sbjct: 250 GEIPERDVVSWTALITGFVAE-GYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVD 308

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            GK++H   +   ++G+  V +ALVDMYAK  F+ +A T+F+++ +R+   W  ++ G A
Sbjct: 309 LGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 368

Query: 428 NHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNM----------- 475
             G  ++A++ F QM+ E  K +  +  + L+ C  +  ++ G++L +M           
Sbjct: 369 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 428

Query: 476 ----MQEKYKIMPRTEHYACMVDLL------------------GRAGRLAEAYEMIKTMS 513
               + + Y      E    + D L                  G+ G+  +A+E +    
Sbjct: 429 VASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEG 488

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           T PD   +  +L AC + G   L E   KH + L
Sbjct: 489 TVPDEVTFIGVLSACSHMG---LIEEGKKHFNSL 519



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 181/370 (48%), Gaps = 34/370 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +H Q+I SG+   + +   L+  Y +C + ++A  +F EIP+ ++  W AL   
Sbjct: 207 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 266

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +   GY    + +F++M  +G   N++   S+L++C  LSD+  G+++H+ ++K+S   +
Sbjct: 267 FVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 325

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMY+K   +E A+ +F+ ++++D+ A   +V+GY Q G   +A+    ++  
Sbjct: 326 DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 385

Query: 274 PRVKPNVVTWNTLISGFSK-------------------SGDQVMVSKLFQLMRAKG---- 310
             VKPN  T  + +SG S+                   SGD  + S L  +    G    
Sbjct: 386 EGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVED 445

Query: 311 --------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                   V  D VSW ++I G   +    +A   F+ ML +G  P   T   +L AC+ 
Sbjct: 446 AEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSH 505

Query: 363 AANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
              +  GK+  +  + + G+   +   + +VD+  + G   E  +  ++M    N + W 
Sbjct: 506 MGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWE 565

Query: 421 SMIFGCANHG 430
           +++  C  HG
Sbjct: 566 TVLGACKMHG 575



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 182/393 (46%), Gaps = 46/393 (11%)

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +KI   V+K+    D+ + SSL+++Y KC S++ A++V +EM  +D+   N  +S     
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ------------------VMVS 300
               EA+ L   +   R++ N   + +LIS  +  GD                   +++S
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS 128

Query: 301 KLF--QLMRAKGVE-----------PDVVSWTSVISGLVHNFCNDEAFDT----FKEMLS 343
             F    M+ + VE            ++ S  +++SG    FC+ E  D       ++L 
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSG----FCDTETCDQGPRILIQLLV 184

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
           +GF P   T  SIL  CAS  ++  GK IHG  I  G+  D H+ ++LV++YAKCG  + 
Sbjct: 185 EGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANY 244

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCH 462
           A  +F ++ ER+ V+W ++I G    GY    + +FNQM  E    +  +F ++L +C  
Sbjct: 245 ACKVFGEIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSS 303

Query: 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
           +  V+LG+++   +  K  +         +VD+  +  R  E  E I     + DLF W 
Sbjct: 304 LSDVDLGKQVHAQIV-KNSLDGNDFVGTALVDMYAK-NRFLEDAETIFNRLIKRDLFAWT 361

Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
            ++      G     E A K   +++ E    N
Sbjct: 362 VIVAGYAQDGQ---GEKAVKCFIQMQREGVKPN 391



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 27/281 (9%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   L SG+ LH+  I +G +    +A+ L+  Y +C  +  A ++FD +   +   W  
Sbjct: 404 RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNT 463

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y++ G   +A+  F  M  +G   +      VL AC H+  I  G+K H   L   
Sbjct: 464 IICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK-HFNSLSKI 522

Query: 210 FGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE---- 263
           +G    +   + ++D+  + G   + +   +EM     V +   V G  +     E    
Sbjct: 523 YGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGER 582

Query: 264 -ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
            A+ L E    P +  N +  + +   F+  G    V+ +  LM  +GV+ +   SW  V
Sbjct: 583 AAMKLFEL--EPEIDSNYILLSNM---FAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEV 637

Query: 322 ISGLVHNFCNDEAF------------DTFKEMLSQGFCPTS 350
            +G VH F + +              D  ++++S G+ P +
Sbjct: 638 -NGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNT 677


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/544 (32%), Positives = 290/544 (53%), Gaps = 33/544 (6%)

Query: 55  LINGIFIEAHYKMPIISRS-FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLT 113
           L+NG+F +A   +  + RS F L+ A+    +     ++  + G  +HA  +  GL  + 
Sbjct: 196 LVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMV 255

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            +A  L+  Y +  ++  +  +FD + + N   W +  G +   G++ + + +F +M   
Sbjct: 256 NLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEH 315

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
            +      + S+L A   L     G ++H   +K +   D FV +SL+DMY+K GS+EKA
Sbjct: 316 NVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKA 375

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-- 291
             +F++M ++++V+ NAM++  VQ G  TEA  LV ++      PN +T   ++   +  
Sbjct: 376 STIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARM 435

Query: 292 ---KSGDQV---------------------MVSKLFQLMRAKGV----EPDVVSWTSVIS 323
              K G Q+                     M SK  QL  A+ +    E D VS+ ++I 
Sbjct: 436 ASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDVSYNTLIL 495

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G   +    E+   FK+M S G    + +    L AC + +  + GKEIH   +   + G
Sbjct: 496 GYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSG 555

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
              + ++L+D+Y K G +  A  +F+K+++++  +WN+MI G   HG  D A ELF  M+
Sbjct: 556 HPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMK 615

Query: 444 -ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
            +    DH+S+ AVL AC H GLV+ G++ F+ M  +  I P+  HYACMVDLLGRAG+L
Sbjct: 616 GDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGRAGQL 674

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
           ++  E+I+ M    +  VWGALLGAC+ HGNIELA+ AA+HL EL+PE +    L+ ++Y
Sbjct: 675 SKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMY 734

Query: 563 ANAG 566
           A  G
Sbjct: 735 AETG 738



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 234/477 (49%), Gaps = 43/477 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LHA  +  G          L+ FY  C     AR +FDE+P+ ++  W +L  A+  
Sbjct: 138 GLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLV 197

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   +A      M   G   N+  + SV+ ACG   +   G  IH+L +K    T   +
Sbjct: 198 NGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNL 257

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY K G VE + +VFD M+E++ V+ N+ +  ++  G   + L +  ++    V
Sbjct: 258 ANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNV 317

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
            P  +T                                    N+L+  ++K G     S 
Sbjct: 318 MPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKAST 377

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F+ M+ +    +VVSW ++I+ LV N    EAF    +M   G CP S T+ ++LPACA
Sbjct: 378 IFEQMKDR----NVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACA 433

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
             A+++ GK+IH  +I  G+  DL + +AL+DMY+KCG +S AR +F++ SE++ V++N+
Sbjct: 434 RMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNT 492

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G +   +C E++ LF QM       D +SF   L+AC ++ + + G+ +  ++  + 
Sbjct: 493 LILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL 552

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            +         ++DL  + G L  A ++   + T+ D+  W  ++     HG I++A
Sbjct: 553 -LSGHPFLSNSLLDLYTKGGMLVTASKIFNKI-TKKDVASWNTMILGYGMHGQIDIA 607



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +G E+H  A+  G   D+   + LV  YA CG   +AR +FD+M ER+ V+WNS++    
Sbjct: 137 KGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFL 196

Query: 428 NHG-YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            +G + D    L + M     L+  S  +V+ AC      + G  + + +  K  +    
Sbjct: 197 VNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSI-HALAVKVGLNTMV 255

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                +VD+ G+ G +  + ++   M  E +   W + +G   N G
Sbjct: 256 NLANALVDMYGKFGDVEASMQVFDGM-LEQNEVSWNSAIGCFLNAG 300


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 245/439 (55%), Gaps = 10/439 (2%)

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF-HEMHIQGLKQNIFVIPSV 185
            ++H+    F ++   N+  + A+   +   GY   A+  + H +    +    +   S+
Sbjct: 85  NSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSL 144

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           +KAC  +  +  G+ +H  + K  F +  FV ++L+D YSK   + +A+KVFDEM E+D 
Sbjct: 145 VKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDA 204

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
            A  AM+S   + G    A  L EE+     + N  TWNT+I G+++ G+      LF  
Sbjct: 205 FAWTAMLSALARVGDMDSARKLFEEMP----ERNTATWNTMIDGYTRLGNVESAELLFNQ 260

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  K    D++SWT++I+    N    +A   + EM   G  P   T+S++  ACA    
Sbjct: 261 MPTK----DIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGA 316

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GKEIH   +  G+  D+++ SALVDMYAKCG +  +  +F K++++N   WN++I G
Sbjct: 317 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 376

Query: 426 CANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HGY ++A+ +F  ME  K + + ++F ++L+AC H GLV+ G+  F  M   Y I P
Sbjct: 377 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 436

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
              HY CMVD+L ++G L EA E+IK+M  EP+  +WGALL  CK HGN E+AE A + L
Sbjct: 437 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL 496

Query: 545 SELEPESAANNMLLTDLYA 563
             LEP ++ +  LL  +YA
Sbjct: 497 MILEPMNSGHYNLLVSMYA 515



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 145/289 (50%), Gaps = 7/289 (2%)

Query: 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
           R T     +I  YT   N+  A +LF+++P  +I  W  +   Y++   +Q+A+ ++ EM
Sbjct: 233 RNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEM 292

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
            + G+  +   + +V  AC H+  +  G++IH  V+      D ++ S+L+DMY+KCGS+
Sbjct: 293 RLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSL 352

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           + +  +F ++ +K++   NA++ G    G A +AL +   +   ++ PN VT+ +++S  
Sbjct: 353 DLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSAC 412

Query: 291 SKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
           + +G  D+   S+   + R   + PD+  +  ++  L  +   +EA +  K M    F P
Sbjct: 413 THAGLVDEGR-SRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSM---EFEP 468

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            S    ++L  C    N    ++     +++      H  + LV MYA+
Sbjct: 469 NSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHY-NLLVSMYAE 516



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 160/384 (41%), Gaps = 74/384 (19%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G+++H  +   G      + T L+ FY++ + +  AR +FDE+ + +   W A+  
Sbjct: 153 AVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLS 212

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A AR G    A  +F EM            P                             
Sbjct: 213 ALARVGDMDSARKLFEEM------------PE---------------------------R 233

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +    +++ID Y++ G+VE A+ +F++M  KDI++   M++ Y Q     +AL +  E+ 
Sbjct: 234 NTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMR 293

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV----------------- 315
              + P+ VT +T+ S  +  G   +  ++   + ++G+  DV                 
Sbjct: 294 LNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLD 353

Query: 316 --------------VSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                           W +VI GL VH +  ++A   F  M  +   P   T  SIL AC
Sbjct: 354 LSLLIFFKLTDKNLYCWNAVIEGLAVHGYA-EKALRMFAIMEREKIMPNGVTFISILSAC 412

Query: 361 ASAANMRRGK-EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
             A  +  G+           +  D+     +VDM +K G+++EA  L   M  E N++ 
Sbjct: 413 THAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSII 472

Query: 419 WNSMIFGCANHGYCDEAIELFNQM 442
           W +++ GC  HG C+ A +   Q+
Sbjct: 473 WGALLNGCKLHGNCEIAEDAVEQL 496



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 117/242 (48%), Gaps = 8/242 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H  ++  GL     I + L+  Y +C ++  + ++F ++   N++ W A+  
Sbjct: 316 ALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIE 375

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSFG 211
             A  GY ++A+ +F  M  + +  N     S+L AC H   +  G  +  S+   +   
Sbjct: 376 GLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIR 435

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            D      ++DM SK G + +A ++   M  E + +   A+++G    G    A + VE+
Sbjct: 436 PDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQ 495

Query: 271 IGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV--VSWTSVISGLVH 327
           +    ++P N   +N L+S +++  D + V+ +  +M+ KGVE      SW   + G +H
Sbjct: 496 LMI--LEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIE-LEGTIH 552

Query: 328 NF 329
            F
Sbjct: 553 QF 554



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 164/374 (43%), Gaps = 28/374 (7%)

Query: 192 LSDIGTGEKIHSL---VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           + +  T  ++H L   ++K +   D F+V   I       SV      F +M   ++   
Sbjct: 46  IKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVY 105

Query: 249 NAMVSGYVQRGLATEALN-LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
           NAM+ G+V  G    AL   V  +    V P   T+++L+    K+   +   +L Q++ 
Sbjct: 106 NAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLV----KACTFMCAVELGQMVH 161

Query: 308 A----KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA-TISSILPACAS 362
                KG E  +   T+++          EA   F EM     C   A   +++L A A 
Sbjct: 162 CHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEM-----CERDAFAWTAMLSALAR 216

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             +M   +++         E +    + ++D Y + G +  A  LF++M  ++ ++W +M
Sbjct: 217 VGDMDSARKL----FEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTM 272

Query: 423 IFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I   + +    +A+ ++++M     + D ++ + V +AC H+G +ELG+ + + +  +  
Sbjct: 273 ITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQ-G 331

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           +       + +VD+  + G L  +  +I    T+ +L+ W A++     HG    AE A 
Sbjct: 332 LNLDVYIGSALVDMYAKCGSLDLSL-LIFFKLTDKNLYCWNAVIEGLAVHG---YAEKAL 387

Query: 542 KHLSELEPESAANN 555
           +  + +E E    N
Sbjct: 388 RMFAIMEREKIMPN 401


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 274/498 (55%), Gaps = 33/498 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           ++ QLIVSGL +   +  K I       ++++A   F E+ + +I  W A+   Y ++  
Sbjct: 21  VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 80

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
               + ++ +M I  +  N F    VLKACG  S  G G++IH    K+ FG++ FV +S
Sbjct: 81  VDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNS 140

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ MY+K G +  A+ VFD++ ++ +V+  +++SGYVQ G   EALN+ +E+    VKP+
Sbjct: 141 LVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 200

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE--------------------------- 312
            +   ++++ ++   D      +  L+   G+E                           
Sbjct: 201 WIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFN 260

Query: 313 ----PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
               P+++ W ++ISG  +N   +EA   F+EM+++     S T+ S + A A   ++  
Sbjct: 261 RMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLEL 320

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
            + + G         D  V + L+DMYAKCG I  AR +FD++++++ V W+ MI G   
Sbjct: 321 ARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGL 380

Query: 429 HGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           HG+  EAI L+N+M++     +  +F  +LTAC + GLV+ G  LF++M + + I P  +
Sbjct: 381 HGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPHHQ 439

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           HY+C+VDLLGRAG L +AY+ I +M  +P + VWGALL ACK H  + L EIAA+ L  L
Sbjct: 440 HYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFIL 499

Query: 548 EPESAANNMLLTDLYANA 565
           +P +  + + L++LYA+A
Sbjct: 500 DPYNTGHYVQLSNLYASA 517



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 164/365 (44%), Gaps = 32/365 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H Q    G      +   L++ Y +   I +AR++FD++    +  W ++   Y +
Sbjct: 119 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 178

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   EA+ VF EM    +K +   + SV+ A  ++ D+G G+ IH LV K     +  +
Sbjct: 179 NGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDI 238

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           V SL  MY+K G VE A+  F+ M + +++  NAM+SGY   G   EA+ L  E+ T  +
Sbjct: 239 VISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNI 298

Query: 277 KPNVVTWNTLI--------------------------SGFSKSGDQVMVSKLFQLMRAKG 310
           + + +T  + +                            F  +G   M +K   +  A+ 
Sbjct: 299 RVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARC 358

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     + DVV W+ +I G   +    EA   + EM   G CP   T   +L AC ++  
Sbjct: 359 VFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGL 418

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT-WNSMIF 424
           ++ G E+       G+E      S +VD+  + G++++A      M  +  V+ W +++ 
Sbjct: 419 VKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLS 478

Query: 425 GCANH 429
            C  H
Sbjct: 479 ACKIH 483



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 133/283 (46%), Gaps = 3/283 (1%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           Y     L  GK +H  +   GL     I   L T Y +   +  AR  F+ + K N+  W
Sbjct: 211 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILW 270

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            A+   YA  GY +EA+ +F EM  + ++ +   + S + A   +  +     +   + K
Sbjct: 271 NAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISK 330

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             +  D FV + LIDMY+KCGS+  A+ VFD + +KD+V  + M+ GY   G   EA+ L
Sbjct: 331 SEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICL 390

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
             E+    V PN  T+  L++    SG      +LF LM   G+EP    ++ V+  L  
Sbjct: 391 YNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGR 450

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
               ++A+D    ++S    P  +   ++L AC     +R G+
Sbjct: 451 AGYLNQAYDF---IMSMPIKPGVSVWGALLSACKIHRKVRLGE 490


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 176/500 (35%), Positives = 270/500 (54%), Gaps = 33/500 (6%)

Query: 98  KILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           +I+H   +  GL     ++   L+  Y +C +   ++ +FDEI + N+  W A+  +++ 
Sbjct: 260 RIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSF 319

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           RG + +A+ VF  M  +G++ N   I S+L   G L     G ++H   LK +  +D F+
Sbjct: 320 RGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFI 379

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLIDMY+K GS   A  +F++M  ++IV+ NAM++ + +  L  EA+ LV ++     
Sbjct: 380 SNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGE 439

Query: 277 KPNVVTWNTLIS-----GFSKSGDQV---------------------MVSKLFQLMRAKG 310
            PN VT+  ++      GF   G ++                     M SK   L  A+ 
Sbjct: 440 TPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQN 499

Query: 311 V----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
           V      D VS+  +I G      + E+   F EM   G  P   +   ++ ACA+ A +
Sbjct: 500 VFNISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFI 559

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           R+GKEIHG  +       L V ++L+D+Y +CG I  A  +F  +  ++  +WN+MI G 
Sbjct: 560 RQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGY 619

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
              G  D AI LF  M+E   + D +SF AVL+AC H GL+E G++ F MM +   I P 
Sbjct: 620 GMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCD-LNIEPT 678

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
             HYACMVDLLGRAG + EA ++I+ +S  PD  +WGALLGAC+ HGNIEL   AA+HL 
Sbjct: 679 HTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLF 738

Query: 546 ELEPESAANNMLLTDLYANA 565
           EL+P+     +LL+++YA A
Sbjct: 739 ELKPQHCGYYILLSNMYAEA 758



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 220/511 (43%), Gaps = 79/511 (15%)

Query: 94  LQSGKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFDE--IPKTNIHRWIAL 150
           L   K +HA  ++ G L R   +   LI  Y    +  ++ +LF        +   W  L
Sbjct: 50  LSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTL 109

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             A +  G   +    ++ M   G+K +    P VLK C    ++  G ++H +  K  F
Sbjct: 110 IRANSIAGVF-DGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGF 168

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL--V 268
             D FV ++L+  Y  CG    A KVFDEM E+D V+ N ++      G   EAL    V
Sbjct: 169 DGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRV 228

Query: 269 EEIGTPRVKPNVVT------------------------------------WNTLISGFSK 292
                P ++P++VT                                     N L+  + K
Sbjct: 229 MVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGK 288

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            G +    K+F  +     E +V+SW ++I+         +A D F+ M+ +G  P S T
Sbjct: 289 CGSEKASKKVFDEID----ERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVT 344

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           ISS+LP        + G E+HG ++ M +E D+ + ++L+DMYAK G    A T+F+KM 
Sbjct: 345 ISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMG 404

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQR 471
            RN V+WN+MI   A +    EA+EL  QM+ + +  ++++FT VL AC  +G + +G+ 
Sbjct: 405 VRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKE 464

Query: 472 L----------------------------FNMMQEKYKIMPRTE-HYACMVDLLGRAGRL 502
           +                             N+ Q  + I  R E  Y  ++    R    
Sbjct: 465 IHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVRDEVSYNILIIGYSRTNDS 524

Query: 503 AEAYEM---IKTMSTEPDLFVWGALLGACKN 530
            E+  +   ++ +   PD+  +  ++ AC N
Sbjct: 525 LESLRLFSEMRLLGMRPDIVSFMGVVSACAN 555



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 141/276 (51%), Gaps = 4/276 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +HA++I  G +    ++  L   Y++C  ++ A+ +F+   +  +   I + G 
Sbjct: 459 LNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVRDEVSYNILIIG- 517

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y+R     E++ +F EM + G++ +I     V+ AC +L+ I  G++IH L+++  F T 
Sbjct: 518 YSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTH 577

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV +SL+D+Y++CG ++ A KVF  +  KD+ + N M+ GY  RG    A+NL E +  
Sbjct: 578 LFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKE 637

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
             V+ + V++  ++S  S  G      K F++M    +EP    +  ++  L      +E
Sbjct: 638 DGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYACMVDLLGRAGLMEE 697

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
           A D  + +      P +    ++L AC    N+  G
Sbjct: 698 AADLIRGL---SIIPDTNIWGALLGACRIHGNIELG 730



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 16/255 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +H  L+         +A  L+  YT C  I  A  +F  I   ++  W  +   
Sbjct: 559 IRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILG 618

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y  RG    A+ +F  M   G++ +     +VL AC H   I  G K   ++   +    
Sbjct: 619 YGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPT 678

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM-----VSGYVQRGLATEALNL 267
               + ++D+  + G +E+A  +   + +  D     A+     + G ++ GL   A +L
Sbjct: 679 HTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWA-AEHL 737

Query: 268 VEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
            E      +KP    +  L+S  ++++      +K+ +LM+++G + +   SW  V   L
Sbjct: 738 FE------LKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQV-GDL 790

Query: 326 VHNFCNDEAFDTFKE 340
           VH F   E  D+  +
Sbjct: 791 VHAFLVGEKIDSLDD 805


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/488 (32%), Positives = 261/488 (53%), Gaps = 41/488 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y+  +    R  +L+ GK LH Q+I +       +A+ ++  Y +C     A+ +F  + 
Sbjct: 294 YTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLR 353

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             N   W  L G + + G   E+V +F++M  + +  + F + +++  C +  DI  G +
Sbjct: 354 DRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQ 413

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +HSL LK        V +SLI MY+KCG+++ A+ +F+ M E+DIV              
Sbjct: 414 LHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIV-------------- 459

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
                                +W  +I+ +S+ G+     + F  M  +    +V++W +
Sbjct: 460 ---------------------SWTGMITAYSQVGNIAKAREFFDDMSTR----NVITWNA 494

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++   + +   ++    + +ML++    P   T  ++   CA     + G +I G  + +
Sbjct: 495 MLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKV 554

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
           G+  D  V +A++ MY+KCG ISEAR  FD +S ++ V+WN+MI G + HG   +AIE+F
Sbjct: 555 GLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIF 614

Query: 440 NQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           +  + +  K D++S+ AVL+ C H GLVE G+  F+MM+  + I P  EH++CMVDLLGR
Sbjct: 615 DDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGR 674

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           AG L EA  +I  M  +P   VWGALL ACK HGN +LAE+AAKHL +L+   +   MLL
Sbjct: 675 AGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLL 734

Query: 559 TDLYANAG 566
             +YA+AG
Sbjct: 735 AKMYADAG 742



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 135/512 (26%), Positives = 211/512 (41%), Gaps = 114/512 (22%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR-MLFDEIPKTNIHRWIALT 151
           AL   + LH++LI  GLA +  +   L+  Y  C  +  AR +L DEI + N+     + 
Sbjct: 40  ALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMM 99

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQ--------------------------------NI 179
             YA+ G   +AV +F  M  + +                                  N 
Sbjct: 100 NGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNA 159

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F    V+K+CG L       ++  L+ K     D  V ++L+DM  +CG+++ A K F  
Sbjct: 160 FTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSR 219

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           +    I+  N+M+ GY +      AL    EI     + +VV+WN +IS  SKSG     
Sbjct: 220 IKNPTIICRNSMLVGYAKSHGVDHAL----EIFKSMPERDVVSWNMVISALSKSGRVREA 275

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             +   M  KGV PD                                   S T +S L A
Sbjct: 276 LDMVVDMHGKGVRPD-----------------------------------STTYTSSLTA 300

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA  +++  GK++H   I      D +V SA+V++YAKCG   EA+ +F  + +RN+V+W
Sbjct: 301 CARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSW 360

Query: 420 NSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL------ 472
             +I G   +G   E++ELFNQM  E   +D  +   +++ CC+   + LG +L      
Sbjct: 361 TVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLK 420

Query: 473 -----------------------------FNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
                                        FN M E+  +      +  M+    + G +A
Sbjct: 421 SGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIV-----SWTGMITAYSQVGNIA 475

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           +A E    MST  ++  W A+LGA   HG  E
Sbjct: 476 KAREFFDDMSTR-NVITWNAMLGAYIQHGAEE 506



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 154/387 (39%), Gaps = 79/387 (20%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF-DEM 240
           +   L++CG  S +     +HS ++     +  F+ ++L+  Y  CG++  A+ +  DE+
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
            E                                   PNV+T N +++G++K G      
Sbjct: 88  TE-----------------------------------PNVITHNIMMNGYAKLGSLSDAV 112

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPA 359
           +LF  M  +    DV SW +++SG   +     A D F  M   G   P + T   ++ +
Sbjct: 113 ELFGRMPTR----DVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKS 168

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           C +        ++ G       + D  V++ALVDM  +CG +  A   F ++     +  
Sbjct: 169 CGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICR 228

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK--------------------------------K 447
           NSM+ G A     D A+E+F  M ER                                 +
Sbjct: 229 NSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVR 288

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEA 505
            D  ++T+ LTAC  +  +E G++L     +  + +P  + Y  + MV+L  + G   EA
Sbjct: 289 PDSTTYTSSLTACARLSSLEWGKQLH---VQVIRNLPHIDPYVASAMVELYAKCGCFKEA 345

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHG 532
             +  ++  + +   W  L+G    +G
Sbjct: 346 KRVFSSLR-DRNSVSWTVLIGGFLQYG 371



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           GL   T +   +IT Y++C  I  AR  FD + + ++  W A+   Y++ G  ++A+ +F
Sbjct: 555 GLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIF 614

Query: 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSK 226
            ++  +G K +     +VL  C H   +  G+    ++ + H+        S ++D+  +
Sbjct: 615 DDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGR 674

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV----KPNVVT 282
            G + +AK + DEM  K      A V G +     T   N + E+    +     P    
Sbjct: 675 AGHLIEAKNLIDEMPMKP----TAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGG 730

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNF 329
           +  L   ++ +G     +++ +LMR KG++     SW  V +  VH F
Sbjct: 731 YMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEV-NNRVHVF 777



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 35/217 (16%)

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF- 408
           +  ++  L +C + + +   + +H   I +G+   + +++ L+  Y  CG +S+AR L  
Sbjct: 25  TQALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLR 84

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-------------------KKLD 449
           D+++E N +T N M+ G A  G   +A+ELF +M  R                     LD
Sbjct: 85  DEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALD 144

Query: 450 --------------HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
                           +F  V+ +C  +G  E+  +L  ++  K+      +    +VD+
Sbjct: 145 IFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLS-KFDSQDDPDVQTALVDM 203

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           L R G +  A +    +     +     L+G  K+HG
Sbjct: 204 LVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHG 240


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 167/480 (34%), Positives = 272/480 (56%), Gaps = 31/480 (6%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           + G+I+ A+ +   +     I  T +I+ Y +C  I  AR LFD +  K N+  W A+ G
Sbjct: 79  KDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVG 138

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y R     +A  +F+EM      +N+    +++        I +   +   + + +   
Sbjct: 139 GYIRSNKISDAEKLFNEMP----NKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERN--- 191

Query: 213 DAFVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
              VVS  +++ M ++CG +E+A+++FD M E+D+++  AM++G     L  EAL+L E 
Sbjct: 192 ---VVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAG-----LLDEALDLFER 243

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
           +     + ++ +WNT+I+G  ++GD     KLF  M  K    +V+SWT++I+G V    
Sbjct: 244 M----PERDLPSWNTMITGLIQNGDLRRARKLFNEMPKK----NVISWTTMITGCVQEGE 295

Query: 331 NDEAFDTFKEMLS-QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           ++EA   F  MLS  G  P   T  S+L AC++ A +  G+++H        +    V S
Sbjct: 296 SEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVS 355

Query: 390 ALVDMYAKCGFISEARTLFDK--MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
           AL++MY+KCG +  AR +FD    S+R+ V+WN +I   A+HGY  EAI  F +M +   
Sbjct: 356 ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGF 415

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           K D +++  +L+AC H GLVE G + F+ + +   I+ R +HYAC+VDL GRAGRL EA+
Sbjct: 416 KPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAF 475

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             I+ + T+P   VWGALL  C  H N+++ + AAK L E+EPE+A   +LL+++YA+ G
Sbjct: 476 GFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTG 535



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 170/352 (48%), Gaps = 33/352 (9%)

Query: 205 VLKHSFGTDAFVV--SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
           + +  F  D  V   + +I   SK G + +A+++FDEM E D++    ++SGY++ G+  
Sbjct: 56  IPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIE 115

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
           EA  L + +     K NVVTW  ++ G+ +S       KLF  M  K    +VVSW ++I
Sbjct: 116 EARRLFDRVDA---KKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNK----NVVSWNTMI 168

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR-------GKEIHGC 375
            G   N   D A   F++M  +     + T+ S+L  C      RR          I   
Sbjct: 169 DGYAQNGRIDSAMYLFEKMPERNVVSWN-TVMSMLAQCGRIEEARRLFDRMPERDVISWT 227

Query: 376 AIVMGV------------EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A++ G+            E DL   + ++    + G +  AR LF++M ++N ++W +MI
Sbjct: 228 AMIAGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMI 287

Query: 424 FGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
            GC   G  +EA+++F++M      K +  +F +VL AC ++  +  GQ++  ++  K  
Sbjct: 288 TGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIIS-KTV 346

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKT-MSTEPDLFVWGALLGACKNHG 532
               T   + ++++  + G L  A +M    M+++ DL  W  ++ A  +HG
Sbjct: 347 YQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHG 398



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 131/293 (44%), Gaps = 49/293 (16%)

Query: 270 EIGTPR----VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
           +I  PR    V  NV   N +I+  SK G  +   +LF  MR    EPDV++WT+VISG 
Sbjct: 53  KISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMR----EPDVITWTTVISGY 108

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATI-------SSILPACASAANMRRGKEIHGCAIV 378
           +     +EA   F  + ++    T   +       + I  A      M     +    ++
Sbjct: 109 IKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMI 168

Query: 379 MGVEGDLHVRSAL-----------------VDMYAKCGFISEARTLFDKMSERNTVTWNS 421
            G   +  + SA+                 + M A+CG I EAR LFD+M ER+ ++W +
Sbjct: 169 DGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTA 228

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           MI      G  DEA++LF +M ER   D  S+  ++T     G +   ++LFN M +K  
Sbjct: 229 MI-----AGLLDEALDLFERMPER---DLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV 280

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYE----MIKTMSTEPDLFVWGALLGACKN 530
           I   T    C+     + G   EA +    M+ T   +P+   + ++LGAC N
Sbjct: 281 ISWTTMITGCV-----QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 328



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           V+G++   + ++   +K G I EAR LFD+M E + +TW ++I G    G  +EA  LF+
Sbjct: 63  VDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD 122

Query: 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           +++ +K +  +++TA++        +   ++LFN M  K  +      +  M+D   + G
Sbjct: 123 RVDAKKNV--VTWTAMVGGYIRSNKISDAEKLFNEMPNKNVV-----SWNTMIDGYAQNG 175

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           R+  A  + + M  E ++  W  ++      G IE     A+ L +  PE
Sbjct: 176 RIDSAMYLFEKMP-ERNVVSWNTVMSMLAQCGRIE----EARRLFDRMPE 220



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 45/204 (22%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE--IPKTNIHRWIAL 150
            L  G+ +H  +  +     T + + LI  Y++C  +  AR +FD+    + ++  W  +
Sbjct: 331 GLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGI 390

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             AYA  GY +EA+  F EM   G K +      +L AC H                   
Sbjct: 391 IAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSH------------------- 431

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA-----MVSGYVQRGLATEAL 265
                            G VE+  K FDE+V+   + +       +V    + G   EA 
Sbjct: 432 ----------------AGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAF 475

Query: 266 NLVEEIGTPRVKPNVVTWNTLISG 289
             +E + T   KP+   W  L++G
Sbjct: 476 GFIERLET---KPSARVWGALLAG 496


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 180/545 (33%), Positives = 276/545 (50%), Gaps = 69/545 (12%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           + I  R +A Q    LHAQ ++   A      + L++ Y+    +H +  LF+ I     
Sbjct: 17  LSIKSRSQAQQ----LHAQ-VLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPA 71

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W ++   Y   G   +++  F  M   GL  +  V PSVLK+C  L D+  GE +H  
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGY 131

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKA------------------------------- 233
           +++     D +  ++L++MYSK   +E++                               
Sbjct: 132 IIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDS 191

Query: 234 -KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
            +K+F+ M EKD+V+ N +++G  + GL  E L ++ E+G   +KP+  T ++++   ++
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251

Query: 293 SGD------------------QVMVSKLFQLMRAKGV-------------EPDVVSWTSV 321
           + D                   + V+     M AK               E D +SW S+
Sbjct: 252 NVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSI 311

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+G V N   DE    F++ML     P S + SSI+PACA    +  GK++HG     G 
Sbjct: 312 IAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGF 371

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           + ++ + S+LVDMYAKCG I  A+ +FD+M  R+ V+W +MI GCA HG   +AIELF Q
Sbjct: 372 DENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQ 431

Query: 442 ME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           ME E  K +H++F AVLTAC H GLV+   + FN M   + I P  EHYA + DLLGRAG
Sbjct: 432 METEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAG 491

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           RL EAY+ I  M   P   +W  LL AC+ H NI++AE  A  + E++P +    +LL +
Sbjct: 492 RLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLAN 551

Query: 561 LYANA 565
           +Y+ A
Sbjct: 552 IYSAA 556


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 271/486 (55%), Gaps = 47/486 (9%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH------- 171
           +++ Y +   +  A  LF+E+P+ N+  W A+   Y   G+ ++A+  F  M        
Sbjct: 158 MLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASL 217

Query: 172 ---IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL-VLKHSFGTDAF------------ 215
              + GL QN  ++ +      +  ++G G+ + +   L   +G                
Sbjct: 218 RALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIP 277

Query: 216 -----------VVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
                      V+S  S+I  Y + G +  A+++FD+MVE+D  + N M+SGYVQ     
Sbjct: 278 LCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMK 337

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
           EA NL   +     +P+ ++WN +ISGFS+ G   +   LF+ +     E  +VSW S+I
Sbjct: 338 EASNLFSRMP----EPDTLSWNMMISGFSEIGSLKLAHDLFKRI----PEKSLVSWNSMI 389

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           SG   N     A + F +M  +G  P   T+SSIL ACA   ++  G +IH   +     
Sbjct: 390 SGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQL-VTKAFI 448

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
            DL + ++LV MY++CG I EAR +FD+M+ +R+ ++WN+MI G A HG+  EA++LF+ 
Sbjct: 449 ADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDL 508

Query: 442 MEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M++   +  +++F +VL AC H GL+E G+R FN M   + I P+ EHYA +VD++GR G
Sbjct: 509 MKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHG 568

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           +L EA  +I +M  EPD  VWGALLGACK H N+E+A  AA+ L +L+PES+A  +LL +
Sbjct: 569 QLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHN 628

Query: 561 LYANAG 566
           +YA+ G
Sbjct: 629 MYADVG 634



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 159/302 (52%), Gaps = 10/302 (3%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+ ++E  ++  A  LF  IP+ ++  W ++   Y +   ++ A+ +F +M ++G K +
Sbjct: 357 MISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPD 416

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              + S+L AC  L D+  G +IH LV K +F  D  + +SL+ MYS+CG++ +A+ VFD
Sbjct: 417 RHTLSSILSACAGLVDLVLGTQIHQLVTK-AFIADLPINNSLVTMYSRCGAIVEARMVFD 475

Query: 239 EM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           EM +++D+++ NAM+ GY   G ATEAL L + +    V+P+ +T+ ++++  + +G   
Sbjct: 476 EMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIE 535

Query: 298 MVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              + F  M    G++P V  + +++  +  +   +EA      M  +   P  A   ++
Sbjct: 536 EGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCE---PDKAVWGAL 592

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV-DMYAKCGFISEARTLFDKMSERN 415
           L AC    N+   +       +M ++ +      L+ +MYA  G   +A  +   M E+N
Sbjct: 593 LGACKVHNNVEMARA--AAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEM-RTMMEKN 649

Query: 416 TV 417
            V
Sbjct: 650 NV 651



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 205/456 (44%), Gaps = 59/456 (12%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
            K I++      I+ AR LFD     N   W  +  AY +R    +A  +F EM      
Sbjct: 61  NKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEM------ 114

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            N  ++   L   G++S  G   +    +      TD    ++++  Y+K G+++KA+++
Sbjct: 115 PNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEEL 174

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEAL-------------------------NLVE-- 269
           F+EM E+++V+ NAMVSGY+  G   +A+                          LVE  
Sbjct: 175 FNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAE 234

Query: 270 ----EIGTPRVKPNVV-TWNTLISGFSKSGDQVMVSKLFQLM----RAKGVEPDVVSWTS 320
               + G    K ++V  +NTLI+G+ + G      KLF  +           +V+SW S
Sbjct: 235 RILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNS 294

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +I   V       A + F +M+ +     + + ++++       +M+    +        
Sbjct: 295 MIMCYVRAGDIVSARELFDKMVER----DTFSWNTMISGYVQILDMKEASNLFSRM---- 346

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            E D    + ++  +++ G +  A  LF ++ E++ V+WNSMI G   +     A+ +F 
Sbjct: 347 PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFL 406

Query: 441 QME-ERKKLDHLSFTAVLTACCHVGLVE--LGQRLFNMMQEKY-KIMPRTEHYACMVDLL 496
           QM+ E KK D  + +++L+AC   GLV+  LG ++  ++ + +   +P       +V + 
Sbjct: 407 QMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQIHQLVTKAFIADLPINN---SLVTMY 461

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            R G + EA  +   M+ + D+  W A++G    HG
Sbjct: 462 SRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHG 497



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 181/428 (42%), Gaps = 58/428 (13%)

Query: 55  LINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIV------SG 108
           +++G  +  H +  I    F L P   S  +   +    +Q+ K++ A+ I+       G
Sbjct: 189 MVSGYLMNGHVEKAI--EFFKLMPKRDSASLRALVSG-LIQNDKLVEAERILLQYGGNVG 245

Query: 109 LARLTQIATKLITFYTECQNIHHARMLFDEIP--------KTNIHRWIALTGAYARRGYH 160
              L      LI  Y +    + AR LFD IP        + N+  W ++   Y R G  
Sbjct: 246 KGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDI 305

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
             A  +F +M    ++++ F   +++     + D+     + S + +     D    + +
Sbjct: 306 VSARELFDKM----VERDTFSWNTMISGYVQILDMKEASNLFSRMPE----PDTLSWNMM 357

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           I  +S+ GS++ A  +F  + EK +V+ N+M+SGY +      A+N+  ++     KP+ 
Sbjct: 358 ISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDR 417

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAK------------------------------- 309
            T ++++S  +   D V+ +++ QL+                                  
Sbjct: 418 HTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEM 477

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
            ++ DV+SW ++I G  ++    EA   F  M      P+  T  S+L ACA A  +  G
Sbjct: 478 NLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEG 537

Query: 370 -KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCA 427
            +E +      G++  +   +ALVD+  + G + EA +L + M  E +   W +++  C 
Sbjct: 538 RREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACK 597

Query: 428 NHGYCDEA 435
            H   + A
Sbjct: 598 VHNNVEMA 605


>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
          Length = 826

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 269/476 (56%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T  + FY +   I +A M+FD + + ++  W  L  
Sbjct: 287 GIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLIS 346

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+ +   M ++ LK +   + +++ A     ++  G+++    ++HSF +
Sbjct: 347 GYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFAS 406

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+ CGS+  AKKVFD ++ KD++  N ++S Y + GL+ EA  L  E+ 
Sbjct: 407 DIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQ 466

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PN +TWN +I  F ++G      ++F  M++ G+ P++VSWT++++GLV N C++
Sbjct: 467 LESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSE 526

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M   G  P + +I+  L AC++ A++  G+ +HG  I        + + ++L
Sbjct: 527 EAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSL 586

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG I++A  +F      +   +N+MI   A +G   EAI L  ++E+   K D+
Sbjct: 587 VDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALCRRLEDTGIKPDN 646

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT++L+AC H G V     +F  M  K+ I P  EHY  MVD+L  AG   +A  +I+
Sbjct: 647 ITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDILASAGETDKALRLIE 706

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  + D  +  +L+ +C      EL +  ++HL E EPE++ N + +++ YA  G
Sbjct: 707 EMPYKSDARMIQSLVASCNMKHKTELMDFLSRHLLETEPENSGNYVTISNAYAVEG 762



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/534 (28%), Positives = 258/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R   + P  Y E ++  + +R L +GK +HA+++ +G   A+   I TKL+ FY +C   
Sbjct: 62  RKLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAF 121

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             + +LF ++   N++ W A+ G   R G  +EA+  F EM    +  + FV+P+V KAC
Sbjct: 122 EASEVLFSKLRVRNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKAC 181

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V+K       FV SSL DMY KCG ++ A+KVFDE+ E+++VA N
Sbjct: 182 GALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWN 241

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQ-------- 296
           A++ GYVQ G+  EA+ L+ ++    ++P  VT +T +S  +     + G Q        
Sbjct: 242 ALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVN 301

Query: 297 ------------------VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
                             V + +  +++  + +E DVV+W  +ISG V     ++A    
Sbjct: 302 GLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMC 361

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++ A A   N++ GKE+    I      D+ + S  VDMYA C
Sbjct: 362 QLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANC 421

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD +  ++ + WN+++   A  G   EA  LF +M+ E    + +++  ++
Sbjct: 422 GSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLII 481

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V   + +F+ MQ    I P    +  M++ L + G   EA   ++ M     
Sbjct: 482 LSFLRNGQVNEAKEIFSQMQSS-GIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGL 540

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
            P+ F     L AC N  ++        ++  ++    S      L D+YA  G
Sbjct: 541 RPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAKCG 594



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/501 (23%), Positives = 232/501 (46%), Gaps = 74/501 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++ SGL     +A+ L   Y +C  +  AR +FDEIP+ N+  W AL   Y +
Sbjct: 190 GRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQ 249

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  +M  +G++     + + L A  ++  I  G++ H++ + +    D  +
Sbjct: 250 NGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNIL 309

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S ++ Y K G +E A+ +FD M+EKD+V  N ++SGYVQ+GL  +A+++ + +    +
Sbjct: 310 GTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENL 369

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           K + VT +TL+S  +++     G +V                     M +    ++ AK 
Sbjct: 370 KYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKK 429

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V       D++ W +++S    +  + EAF  F EM  +   P + T + I+ +      
Sbjct: 430 VFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILS------ 483

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER----NTVTWNS 421
                                        + + G ++EA+ +F +M       N V+W +
Sbjct: 484 -----------------------------FLRNGQVNEAKEIFSQMQSSGIFPNLVSWTT 514

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+ G   +G  +EAI    +M+E   + +  S T  L+AC ++  +  G+ +   +    
Sbjct: 515 MMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQ 574

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           +          +VD+  + G + +A EM+       DL ++ A++ A   +GN++ A   
Sbjct: 575 QHSSSVLIETSLVDMYAKCGDINKA-EMVFRSKLCSDLPLYNAMISAYALNGNVKEAIAL 633

Query: 541 AKHLSE--LEPESAANNMLLT 559
            + L +  ++P++     LL+
Sbjct: 634 CRRLEDTGIKPDNITFTSLLS 654



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 219/466 (46%), Gaps = 43/466 (9%)

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
           HH          +  HR  +L+    + G  +EA+++  EM  + L+    +   +L+ C
Sbjct: 23  HHDAQAHSPSSASYFHRVSSLS----KSGEIREALSLLTEMDFRKLRIGPEIYGEILQGC 78

Query: 190 GHLSDIGTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
            +  D+ TG++IH+ +LK+   +  + ++ + L+  Y+KC + E ++ +F ++  +++ +
Sbjct: 79  VYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYS 138

Query: 248 MNAMVSGYVQRGLATEAL-----NLVEEIGTPR-VKPNV------VTWNTLISGFS---- 291
             A++    + GL  EAL      L  EI     V PNV      + W+    G      
Sbjct: 139 WAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVV 198

Query: 292 KSG--DQVMVSKLFQLMRAK-GV------------EPDVVSWTSVISGLVHNFCNDEAFD 336
           KSG  D V V+     M  K GV            E +VV+W +++ G V N  N+EA  
Sbjct: 199 KSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIR 258

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
              +M  +G  PT  T+S+ L A A+   +  GK+ H  AIV G+E D  + ++ ++ Y 
Sbjct: 259 LLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYC 318

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTA 455
           K G I  A  +FD+M E++ VTWN +I G    G  ++AI +   M  E  K D ++ + 
Sbjct: 319 KVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLST 378

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           +++A      ++LG+ +      ++         +  VD+    G + +A ++  ++  +
Sbjct: 379 LMSAAARTQNLKLGKEV-QCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAK 437

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
            DL +W  LL      G   L+  A +   E++ ES   N +  +L
Sbjct: 438 -DLILWNTLLSVYAESG---LSGEAFRLFYEMQLESVPPNAITWNL 479



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 143/363 (39%), Gaps = 80/363 (22%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R + L+ GK +    I    A    +A+  +  Y  C +I  A+ +FD +   ++  W  
Sbjct: 385 RTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNT 444

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   YA  G   EA  +F+EM ++ +  N                               
Sbjct: 445 LLSVYAESGLSGEAFRLFYEMQLESVPPN------------------------------- 473

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEAL 265
               A   + +I  + + G V +AK++F +M    +  ++V+   M++G VQ G + EA+
Sbjct: 474 ----AITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSEEAI 529

Query: 266 NLVEEIGTPRVKPN------------------------------------VVTWNTLISG 289
             + ++    ++PN                                    V+   +L+  
Sbjct: 530 LFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVDM 589

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           ++K GD   ++K   + R+K +  D+  + ++IS    N    EA    + +   G  P 
Sbjct: 590 YAKCGD---INKAEMVFRSK-LCSDLPLYNAMISAYALNGNVKEAIALCRRLEDTGIKPD 645

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVM-GVEGDLHVRSALVDMYAKCGFISEARTLF 408
           + T +S+L AC  A ++ +  EI    +   G++  L     +VD+ A  G   +A  L 
Sbjct: 646 NITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDILASAGETDKALRLI 705

Query: 409 DKM 411
           ++M
Sbjct: 706 EEM 708


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 267/490 (54%), Gaps = 53/490 (10%)

Query: 123 YTECQNIHHARMLFDE-IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
           +TE QN+     LF+  + KT++  W ++    AR G   EA+  F  M    L      
Sbjct: 22  HTERQNL---TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSS 78

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
            P  +KAC  L DI +G++ H       + +D FV S+LI MYS CG +E A+KVFDE+ 
Sbjct: 79  FPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEI-----------------------GTPRVKP 278
           +++IV+  +M+ GY   G A +A++L +++                          RV  
Sbjct: 139 KRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAA 198

Query: 279 NVVT------------------WNTLISGFSKSGDQ--VMVSKLFQLMRAKGVEPDVVSW 318
             +T                   NTL+  ++K G+    +  K+F  +    V+ D VS+
Sbjct: 199 KGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI----VDKDRVSY 254

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA-TISSILPACASAANMRRGKEIHGCAI 377
            S++S    +  ++EAFD F+ ++ +     +  T+S++L A + +  +R GK IH   I
Sbjct: 255 NSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVI 314

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
            MG+E D+ V ++++DMY KCG +  AR  FD+M  +N  +W +MI G   HG+  +A+E
Sbjct: 315 RMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALE 374

Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF  M +   + ++++F +VL AC H GL ++G   FN M+ ++ + P  EHY CMVDLL
Sbjct: 375 LFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLL 434

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
           GRAG L +AY++I+ M  EPD  +W +LL AC+ H N+ELAEI+   L EL+P +    M
Sbjct: 435 GRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYM 494

Query: 557 LLTDLYANAG 566
           LL+ +YA++G
Sbjct: 495 LLSHIYADSG 504



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 191/411 (46%), Gaps = 73/411 (17%)

Query: 73  SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           SF  +  A S  ++I+       SGK  H Q  V G      +++ LI  Y+ C  +  A
Sbjct: 78  SFPCAIKACSSLLDIF-------SGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA 130

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN--IFV----IPSVL 186
           R +FDEIPK NI  W ++   Y   G   +AV++F ++ I+    +  +F+    + SV+
Sbjct: 131 RKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVI 190

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC--GSVEKAKKVFDEMVEKD 244
            AC  ++  G  E IHS V+K  F     V ++L+D Y+K   G V  A+K+FD++V+KD
Sbjct: 191 SACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-NVVTWNTLISGFSKSG--------- 294
            V+ N+++S Y Q G++ EA ++   +   +V   N +T +T++   S SG         
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIH 310

Query: 295 DQVMVSKL--------------------------FQLMRAKGVEPDVVSWTSVISGLVHN 328
           DQV+   L                          F  M+ K V     SWT++I+G   +
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVR----SWTAMIAGYGMH 366

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA---------NMRRGKEIHGCAIVM 379
               +A + F  M+  G  P   T  S+L AC+ A          N  +G+         
Sbjct: 367 GHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGR--------F 418

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANH 429
           GVE  L     +VD+  + GF+ +A  L  KM  E +++ W+S++  C  H
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIH 469


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 179/483 (37%), Positives = 272/483 (56%), Gaps = 19/483 (3%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K+LHAQ+I+ GL   T    KLI+F    +  ++ +A+ +FD+IP+ N   + +L   Y+
Sbjct: 131 KLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYS 190

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                 +AV +F  M   GL  N F +P VLKACG  S       +H L +K   G+  F
Sbjct: 191 NSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 250

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV--SGYVQRGLATEAL-------- 265
           V ++LI +Y  CG +  A+K+FD++ +K +V+ N+M+  +G     +   AL        
Sbjct: 251 VQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCG 310

Query: 266 NL--VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           NL   + I     + NVV+W ++IS +++ G   +  ++F  M  K    +VVSW S+IS
Sbjct: 311 NLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGK----NVVSWNSMIS 366

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
             +      EA D F +M +    P  AT+ SIL AC+   ++  GK+IH   +      
Sbjct: 367 CYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAY 426

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
            + + ++L+DMYAKCG +  A  +F +M  +N V+WN +I   A HG   EAI+LF +M+
Sbjct: 427 GVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQ 486

Query: 444 ERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
               L D ++ T +L+AC H GLV++G   F+ M   Y++    EHYACMVDLLGR G L
Sbjct: 487 ADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLL 546

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            EA E+I  M  +PD+ VWGALLGAC+ HGN+E+ +   K L ELEP S    +L++++Y
Sbjct: 547 GEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIY 606

Query: 563 ANA 565
             A
Sbjct: 607 WEA 609



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 83/215 (38%), Gaps = 48/215 (22%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +H  ++ +  A    +   LI  Y +C  +  A  +F E+P  N+  W  + GA
Sbjct: 409 LVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGA 468

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A  G   EA+ +F EM   G   +   +  +L AC H                      
Sbjct: 469 LALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSH---------------------- 506

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEM-----VEKDIVAMNAMVSGYVQRGLATEALNLV 268
               S L+DM             FD M     V ++I     MV    + GL  EA   +
Sbjct: 507 ----SGLVDM---------GLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEA---I 550

Query: 269 EEIGTPRVKPNVVTWNTL-----ISGFSKSGDQVM 298
           E IG   +KP+VV W  L     I G  + G Q++
Sbjct: 551 ELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQIL 585


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/486 (35%), Positives = 271/486 (55%), Gaps = 47/486 (9%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH------- 171
           +++ Y +   +  A  LF+E+P+ N+  W A+   Y   G+ ++A+  F  M        
Sbjct: 158 MLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASL 217

Query: 172 ---IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL-VLKHSFGTDAF------------ 215
              I GL QN  ++ +      +  ++G G+ + +   L   +G                
Sbjct: 218 RALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIP 277

Query: 216 -----------VVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
                      V+S  S+I  Y + G +  A+++FD+MVE+D  + N M+SGYVQ     
Sbjct: 278 LCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMK 337

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
           EA NL   +     +P+ ++WN +ISGFS+ G   +   LF+ +     E  +VSW S+I
Sbjct: 338 EASNLFSRMP----EPDTLSWNMMISGFSEIGSLKLAHDLFKRI----PEKSLVSWNSMI 389

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           SG   N     A + F +M  +G  P   T+SSIL ACA   ++  G +IH   +     
Sbjct: 390 SGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQL-VTKAFI 448

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
            DL + ++LV MY++CG I EAR +FD+M+ +R+ ++WN+MI G A HG+  EA++LF+ 
Sbjct: 449 ADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDL 508

Query: 442 MEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M++   +  +++F +VL AC H GL+E G+R FN M   + I P+ EHYA +VD++GR G
Sbjct: 509 MKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHG 568

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           +L EA  +I +M  EPD  VWGALLGACK H N+E+A  AA+ L +L+PES+A  +LL +
Sbjct: 569 QLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHN 628

Query: 561 LYANAG 566
           +YA+ G
Sbjct: 629 MYADVG 634



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 159/302 (52%), Gaps = 10/302 (3%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+ ++E  ++  A  LF  IP+ ++  W ++   Y +   ++ A+ +F +M ++G K +
Sbjct: 357 MISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPD 416

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              + S+L AC  L D+  G +IH LV K +F  D  + +SL+ MYS+CG++ +A+ VFD
Sbjct: 417 RHTLSSILSACAGLVDLVLGTQIHQLVTK-AFIADLPINNSLVTMYSRCGAIVEARMVFD 475

Query: 239 EM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           EM +++D+++ NAM+ GY   G ATEAL L + +    V+P+ +T+ ++++  + +G   
Sbjct: 476 EMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIE 535

Query: 298 MVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              + F  M    G++P V  + +++  +  +   +EA      M  +   P  A   ++
Sbjct: 536 EGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCE---PDKAVWGAL 592

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV-DMYAKCGFISEARTLFDKMSERN 415
           L AC    N+   +       +M ++ +      L+ +MYA  G   +A  +   M E+N
Sbjct: 593 LGACKVHNNVEMARA--AAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEM-RTMMEKN 649

Query: 416 TV 417
            V
Sbjct: 650 NV 651



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 204/456 (44%), Gaps = 59/456 (12%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
            K I++      I+ AR LFD     N   W  +  AY +R    +A  +F EM      
Sbjct: 61  NKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEM------ 114

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            N  ++   L   G++S  G   +    +      TD    ++++  Y+K G ++KA+++
Sbjct: 115 PNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEEL 174

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEAL-------------------------NLVE-- 269
           F+EM E+++V+ NAMVSGY+  G   +A+                          LVE  
Sbjct: 175 FNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAE 234

Query: 270 ----EIGTPRVKPNVV-TWNTLISGFSKSGDQVMVSKLFQLM----RAKGVEPDVVSWTS 320
               + G    K ++V  +NTLI+G+ + G      KLF  +           +V+SW S
Sbjct: 235 RILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNS 294

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +I   V       A + F +M+ +     + + ++++       +M+    +        
Sbjct: 295 MIMCYVRAGDIVSARELFDKMVER----DTFSWNTMISGYVQILDMKEASNLFSRM---- 346

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            E D    + ++  +++ G +  A  LF ++ E++ V+WNSMI G   +     A+ +F 
Sbjct: 347 PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFL 406

Query: 441 QME-ERKKLDHLSFTAVLTACCHVGLVE--LGQRLFNMMQEKY-KIMPRTEHYACMVDLL 496
           QM+ E KK D  + +++L+AC   GLV+  LG ++  ++ + +   +P       +V + 
Sbjct: 407 QMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQIHQLVTKAFIADLPINN---SLVTMY 461

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            R G + EA  +   M+ + D+  W A++G    HG
Sbjct: 462 SRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHG 497



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 181/428 (42%), Gaps = 58/428 (13%)

Query: 55  LINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIV------SG 108
           +++G  +  H +  I    F L P   S  +   I    +Q+ K++ A+ I+       G
Sbjct: 189 MVSGYLMNGHVEKAI--EFFKLMPKRDSASLRALISG-LIQNDKLVEAERILLQYGGNVG 245

Query: 109 LARLTQIATKLITFYTECQNIHHARMLFDEIP--------KTNIHRWIALTGAYARRGYH 160
              L      LI  Y +    + AR LFD IP        + N+  W ++   Y R G  
Sbjct: 246 KGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDI 305

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
             A  +F +M    ++++ F   +++     + D+     + S + +     D    + +
Sbjct: 306 VSARELFDKM----VERDTFSWNTMISGYVQILDMKEASNLFSRMPE----PDTLSWNMM 357

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           I  +S+ GS++ A  +F  + EK +V+ N+M+SGY +      A+N+  ++     KP+ 
Sbjct: 358 ISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDR 417

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAK------------------------------- 309
            T ++++S  +   D V+ +++ QL+                                  
Sbjct: 418 HTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEM 477

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
            ++ DV+SW ++I G  ++    EA   F  M      P+  T  S+L ACA A  +  G
Sbjct: 478 NLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEG 537

Query: 370 -KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCA 427
            +E +      G++  +   +ALVD+  + G + EA +L + M  E +   W +++  C 
Sbjct: 538 RREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACK 597

Query: 428 NHGYCDEA 435
            H   + A
Sbjct: 598 VHNNVEMA 605


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 165/444 (37%), Positives = 248/444 (55%), Gaps = 21/444 (4%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS------ 184
           +AR L    P+ +   +  L   Y+       +V VF EM  +G     FV P       
Sbjct: 57  YARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKG-----FVFPDSFSFAF 111

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           V+KA  +   + TG ++H   LKH   +  FV ++LI MY  CG VE A+KVFDEM + +
Sbjct: 112 VIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN 171

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +VA NA+++   +      A     EI    +  N  +WN +++G+ K+G+     ++F 
Sbjct: 172 LVAWNAVITACFRGNDVAGA----REIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 227

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M  +    D VSW+++I G+ HN   +E+F  F+E+   G  P   +++ +L AC+ + 
Sbjct: 228 EMPHR----DDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSG 283

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMI 423
           +   GK +HG     G    + V +AL+DMY++CG +  AR +F+ M E R  V+W SMI
Sbjct: 284 SFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMI 343

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G A HG  +EA+ LFN+M       D +SF ++L AC H GL+E G+  F+ M+  Y I
Sbjct: 344 AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHI 403

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P  EHY CMVDL GR+G+L +AY+ I  M   P   VW  LLGAC +HGNIELAE   +
Sbjct: 404 EPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L+EL+P ++ + +LL++ YA AG
Sbjct: 464 RLNELDPNNSGDLVLLSNAYATAG 487



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 120/256 (46%), Gaps = 5/256 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           ++  Y +   +  A+ +F E+P  +   W  +    A  G   E+   F E+   G+  N
Sbjct: 209 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPN 268

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              +  VL AC        G+ +H  V K  +     V ++LIDMYS+CG+V  A+ VF+
Sbjct: 269 EVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFE 328

Query: 239 EMVEKD-IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            M EK  IV+  +M++G    G   EA+ L  E+    V P+ +++ +L+   S +G   
Sbjct: 329 GMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIE 388

Query: 298 MVSKLF-QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                F ++ R   +EP++  +  ++     +    +A+D   +M      PT+    ++
Sbjct: 389 EGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQM---PIPPTAIVWRTL 445

Query: 357 LPACASAANMRRGKEI 372
           L AC+S  N+   +++
Sbjct: 446 LGACSSHGNIELAEQV 461



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 157/389 (40%), Gaps = 86/389 (22%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L +C +L  +    +IH L +K+   TD++    LI                      
Sbjct: 10  SLLNSCKNLRAL---TQIHGLFIKYGVDTDSYFTGKLI---------------------- 44

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-QVMVSKL 302
               ++  +S        ++AL     +     +P+   +NTL+ G+S+S +    V+  
Sbjct: 45  ----LHCAIS-------ISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVF 93

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
            ++MR   V PD  S+  VI   V NF                                 
Sbjct: 94  VEMMRKGFVFPDSFSFAFVIKA-VENF--------------------------------- 119

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             ++R G ++H  A+  G+E  L V + L+ MY  CG +  AR +FD+M + N V WN++
Sbjct: 120 -RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAV 178

Query: 423 IFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           I  C        A E+F++M  R   +H S+  +L      G +E  +R+F+ M  +  +
Sbjct: 179 ITACFRGNDVAGAREIFDKMLVR---NHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDV 235

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMS---TEPDLFVWGALLGACKNHGNIELAEI 539
                 ++ M+  +   G   E++   + +      P+      +L AC   G+ E  +I
Sbjct: 236 -----SWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKI 290

Query: 540 AAKHLSELEPE--SAANNMLLTDLYANAG 566
               + +       + NN L+ D+Y+  G
Sbjct: 291 LHGFVEKAGYSWIVSVNNALI-DMYSRCG 318


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/519 (32%), Positives = 280/519 (53%), Gaps = 35/519 (6%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           YS  I      ++L + + +H  +I SG +  + +  KLI  Y +C ++  AR LFDE+P
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFS-YSFLGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +I  W ++  ++   G  +EAV  +  M ++G+  + +   ++ KA   L  I  G++
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQR 122

Query: 201 IHSLVLKHSFGT-DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
            H L +       D FV S+L+DMY+K   +  A  VF  ++EKD+V   A++ GY Q G
Sbjct: 123 AHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHG 182

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV---- 315
           L  EAL + E++    VKPN  T   ++      GD V    +  L+   G+E  V    
Sbjct: 183 LDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQT 242

Query: 316 ---------------------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
                                      V+WTS + GLV N   + A   F+EM+     P
Sbjct: 243 SLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISP 302

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              T+SSIL AC+S A +  G++IH   + +G++G+ +  +AL+++Y KCG + +AR++F
Sbjct: 303 NPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVF 362

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVE 467
           D ++E + V  NSMI+  A +G+  EA+ELF +++    + + ++F ++L AC + GLVE
Sbjct: 363 DVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVE 422

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            G ++F  ++  + I    +H+ CM+DLLGR+ RL EA  +I+ +   PD+ +W  LL +
Sbjct: 423 EGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVRN-PDVVLWRTLLNS 481

Query: 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           CK HG +E+AE     + EL P     ++LLT+LYA+AG
Sbjct: 482 CKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAG 520


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 265/505 (52%), Gaps = 42/505 (8%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G  +HA +   G      + + L+ +Y   +++  A  +F+E+ + ++  W ++  A A
Sbjct: 139 NGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACA 198

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G+  + + +  EM  +G+  N   I S+L ACG    +  G  +++ V K     D  
Sbjct: 199 QCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVD 258

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++LI MY+KCG +  A + F  M  +   + N ++ G+VQ     EAL + EE+    
Sbjct: 259 IRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHG 318

Query: 276 VKPNVVTW-----------------------------------NTLISGFSKSGDQVMVS 300
           V P+ +T                                    N+LI+ ++K GD     
Sbjct: 319 VTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAE 378

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           ++FQ M  K    DVVSWT ++ G V       AF+ F+EM           + S+L AC
Sbjct: 379 RVFQTMTKK----DVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSAC 434

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +    + +G+EIH     M V  DL + SALVDMYAKCG I  A  +F KM  + T++WN
Sbjct: 435 SQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWN 494

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK--KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           +MI G A++GY  EA+ELF+QM E +  K D ++  AVL AC HVG+V+ G R F +M  
Sbjct: 495 AMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMS- 553

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
              ++P TEHY C+VDLLGRAG L EA+  IK M  EP+  +WG+LL AC+ H  ++L +
Sbjct: 554 SLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGK 613

Query: 539 IAAKHLSELEPESAANNMLLTDLYA 563
           +  +H+  + P     ++L+++L+A
Sbjct: 614 VIGQHIVNVAPNDVGVHVLVSNLHA 638



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/494 (26%), Positives = 240/494 (48%), Gaps = 49/494 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           LH +L+ + L   + +A +LI          ++ +AR +FD + + N   W  +   Y+ 
Sbjct: 36  LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSS 95

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI---GTGEKIHSLVLKHSFGTD 213
               ++A+ VF EM  +G+  + + + +V+ A    + +     G+ IH+LV +  F +D
Sbjct: 96  CEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSD 155

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV+S L++ Y    SVE+A KVF+EM E+D+V+  +M+S   Q G   + L ++ E+  
Sbjct: 156 VFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQA 215

Query: 274 PRVKPNVVT------------------W-----------------NTLISGFSKSGDQVM 298
             + PN VT                  W                 N LIS ++K G    
Sbjct: 216 EGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSD 275

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             + FQ M A+  +    SW ++I G V N  + EA   F+EML  G  P   T+ S+L 
Sbjct: 276 ALEAFQAMPARYTK----SWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLS 331

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA    +R+G  +H      G+  D  + ++L++MYAKCG ++ A  +F  M++++ V+
Sbjct: 332 ACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVS 391

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W  M+ G         A  LF +M+  + + H ++  ++L+AC  +G ++ G+ + + ++
Sbjct: 392 WTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIE 451

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG-NIEL 536
           E   +       + +VD+  + G +  A E+ + M  +  L  W A++G   ++G   E 
Sbjct: 452 E-MNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTL-SWNAMIGGLASNGYGKEA 509

Query: 537 AEIAAKHLSELEPE 550
            E+  + L   +P+
Sbjct: 510 VELFDQMLELQDPK 523



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 167/379 (44%), Gaps = 41/379 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A+  G+ ++ Q+   G+     I   LI+ YT+C  +  A   F  +P      W  L 
Sbjct: 236 QAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLI 295

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + +   H+EA+ +F EM + G+  +   + SVL AC  L ++  G  +HS +  +   
Sbjct: 296 DGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGIC 355

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D  + +SLI+MY+KCG +  A++VF  M +KD+V+   MV GYV+    T A NL EE+
Sbjct: 356 CDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEM 415

Query: 272 GTPRVKPNVVTWNTLISG-----------------------------------FSKSGDQ 296
               V  + +   +L+S                                    ++K G  
Sbjct: 416 KIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCI 475

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISS 355
              S++F+ M+ K      +SW ++I GL  N    EA + F +ML  Q   P   T+ +
Sbjct: 476 DTASEIFRKMQHK----QTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKA 531

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           +L ACA    +  G         +GV  D      +VD+  + G + EA     KM  E 
Sbjct: 532 VLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEP 591

Query: 415 NTVTWNSMIFGCANHGYCD 433
           N V W S++  C  H   D
Sbjct: 592 NPVIWGSLLAACRVHHRMD 610



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/458 (21%), Positives = 179/458 (39%), Gaps = 123/458 (26%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS---VEKAKKVFDEMVE 242
           L AC   + +    ++H  +++    +D+FV   LI + +   +   +  A+KVFD M +
Sbjct: 24  LDACASRAHLA---ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQ 80

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
                                              PN   WN +I G+S          +
Sbjct: 81  -----------------------------------PNAFVWNCMIRGYSSCEAPRDALAV 105

Query: 303 FQLMRAKGVEPDV---------------VSWTS-------------------VISGLVHN 328
           F+ MR +GV PD                + W S                   V+SGLV+ 
Sbjct: 106 FREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNY 165

Query: 329 FCN----DEAFDTFKEML-------------------------------SQGFCPTSATI 353
           +      +EA   F+EM                                ++G  P   TI
Sbjct: 166 YGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTI 225

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S+L AC     +  G+ ++      G+E D+ +R+AL+ MY KCG +S+A   F  M  
Sbjct: 226 ISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPA 285

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           R T +WN++I G   +    EA+ +F +M       D ++  +VL+AC  +G +  G  +
Sbjct: 286 RYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHV 345

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNH 531
            + +++   I         ++++  + G +A A  + +TM T+ D+  W  ++ G  K H
Sbjct: 346 HSYIKDN-GICCDNILTNSLINMYAKCGDMAAAERVFQTM-TKKDVVSWTVMVCGYVKGH 403

Query: 532 G---------NIELAEIAAKHLSELEPESAANNMLLTD 560
                      +++AE+ A  ++ +   SA + +   D
Sbjct: 404 QFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALD 441


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 184/555 (33%), Positives = 275/555 (49%), Gaps = 82/555 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G   HA   V+G      +   L+  Y+ C ++  AR +FDE+P  ++  W ++  
Sbjct: 142 SVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIE 201

Query: 153 AYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           +YA+ G  + A+ +F +M  + G + +   + +VL  C  +     G++ H   +     
Sbjct: 202 SYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMI 261

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV------------------- 252
            + FV + L+DMY+K G +++A  VF  M  KD+V+ NAMV                   
Sbjct: 262 QNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQM 321

Query: 253 ----------------SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK---- 292
                           SGY QRGL  EAL +  ++ +  +KPN VT  +++SG +     
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 293 ---------------------SGDQVMVSKLFQLMRAK---------------GVEPDVV 316
                                 GD+ MV      M AK                 E DVV
Sbjct: 382 MHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVV 441

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFC---PTSATISSILPACASAANMRRGKEIH 373
           +WT +I G   +   ++A +   EM  +  C   P + TIS  L ACAS A +  GK+IH
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEED-CQTRPNAFTISCALVACASLAALSIGKQIH 500

Query: 374 GCAIVMGVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
             A+        L V + L+DMYAKCG I +AR +FD M E+N VTW S++ G   HGY 
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYG 560

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           +EA+ +F +M     KLD ++   VL AC H G+++ G   FN M+  + + P  EHYAC
Sbjct: 561 EEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYAC 620

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           +VDLLGRAGRL  A  +I+ M  EP   VW ALL  C+ HG +EL E AAK ++EL   +
Sbjct: 621 LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNN 680

Query: 552 AANNMLLTDLYANAG 566
             +  LL+++YANAG
Sbjct: 681 DGSYTLLSNMYANAG 695



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 139/528 (26%), Positives = 236/528 (44%), Gaps = 85/528 (16%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN--IHRWIA 149
           + +   K++H +L+  G+  L  + + LI+ Y     + HA  L    P ++  ++ W +
Sbjct: 39  KTISQVKLIHQKLLSFGILTL-NLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNS 97

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L  +Y   G   + ++ F  MH      + +  P V KACG +S +  G+  H+L     
Sbjct: 98  LIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTG 157

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL---- 265
           F ++ FV ++L+ MYS+CGS+  A+KVFDEM   D+V+ N+++  Y + G    AL    
Sbjct: 158 FMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFS 217

Query: 266 NLVEEIG--------------------------------TPRVKPNVVTWNTLISGFSKS 293
            +  E G                                T  +  N+   N L+  ++K 
Sbjct: 218 KMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKF 277

Query: 294 GDQVMVSKLFQLMRAKGV-------------------------------EPDVVSWTSVI 322
           G     + +F  M  K V                               + DVV+W++ I
Sbjct: 278 GMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAI 337

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           SG        EA    ++MLS G  P   T+ S+L  CAS   +  GKEIH  AI   ++
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMD 397

Query: 383 ------GDLH-VRSALVDMYAKCGFISEARTLFDKMS--ERNTVTWNSMIFGCANHGYCD 433
                 GD + V + L+DMYAKC  +  AR +FD +S  ER+ VTW  MI G + HG  +
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 434 EAIELFNQMEE---RKKLDHLSFTAVLTACCHVGLVELGQRLFNM-MQEKYKIMPRTEHY 489
           +A+EL ++M E   + + +  + +  L AC  +  + +G+++    ++ +   +P     
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS- 516

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            C++D+  + G + +A  +   M  E +   W +L+     HG  E A
Sbjct: 517 NCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHGYGEEA 563



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 17/259 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATK-LITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           AL  GK +HA  + +    +    +  LI  Y +C +I  AR++FD + + N   W +L 
Sbjct: 492 ALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLM 551

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   GY +EA+ +F EM   G K +   +  VL AC H   I  G +  +  +K  FG
Sbjct: 552 TGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR-MKTDFG 610

Query: 212 TDAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS-----GYVQRGLATE 263
                   + L+D+  + G +  A ++ +EM +E   V   A++S     G V+  L   
Sbjct: 611 VSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVE--LGEY 668

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVI 322
           A   + E+ +     N  ++  L + ++ +G    V+++  LMR KG++     SW   I
Sbjct: 669 AAKKITELAS----NNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGI 724

Query: 323 SGLVHNFCNDEAFDTFKEM 341
            G    F  D+     KE+
Sbjct: 725 KGTTTFFVGDKTHPHAKEI 743


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/506 (33%), Positives = 261/506 (51%), Gaps = 47/506 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW-IALTGAYAR 156
           K +HAQL+ + + +      K+     + ++  +A + F  I     + + + + G    
Sbjct: 49  KQIHAQLLTNSIHKPNSFLYKI----ADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTA 104

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                 A+  +  M   GLK N    P +  AC +L  +  G   H  V++     D  V
Sbjct: 105 WNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHV 164

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
             SLI MY++CG +  A+KVFDE+ +KD+V+ N+M+SGY +   A EA+ L  E+     
Sbjct: 165 SHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGF 224

Query: 277 KPNVV------------------TW-----------------NTLISGFSKSGDQVMVSK 301
           +PN +                  TW                 + LI  + K GD V   +
Sbjct: 225 QPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARR 284

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M+ K    D V+W ++I+G   N  ++EA   F++M      P   T+  IL ACA
Sbjct: 285 IFDSMKKK----DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACA 340

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S   +  GK++   A   G + D++V +ALVDMYAKCG +  A  +F  M ++N V+WN+
Sbjct: 341 SIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNA 400

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           MI   A HG   EA+ LF  M         + ++F  VL+AC H GLV+ G+RLF+MM  
Sbjct: 401 MISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSS 460

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + ++P+ EHY+CMVDL  RAG L EA++ + TM  +PD  + GALLGAC+   NI+++E
Sbjct: 461 SFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISE 520

Query: 539 IAAKHLSELEPESAANNMLLTDLYAN 564
              K L ELEP ++ N ++ + LYAN
Sbjct: 521 RVMKLLLELEPSNSGNYVISSKLYAN 546



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 178/376 (47%), Gaps = 35/376 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+++G++ H  +I  GL     ++  LIT Y  C  +  AR +FDEI + ++  W ++  
Sbjct: 142 AVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMIS 201

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++  +  EAV +F EM   G + N   + SVL ACG L D+  G  +   V+++    
Sbjct: 202 GYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + F+ S+LI MY KCG +  A+++FD M +KD V  NAM++GY Q G++ EA+ L +++ 
Sbjct: 262 NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMR 321

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV----------------- 315
                P+ +T   ++S  +  G   +  ++      +G + DV                 
Sbjct: 322 MSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 316 --------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPA 359
                         VSW ++IS L  +    EA   FK M+++G    P   T   +L A
Sbjct: 382 NAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSA 441

Query: 360 CASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTV 417
           C  A  +  G+ + H  +   G+   +   S +VD++++ G + EA      M E+ + V
Sbjct: 442 CVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEV 501

Query: 418 TWNSMIFGCANHGYCD 433
              +++  C      D
Sbjct: 502 ILGALLGACQKRKNID 517


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/422 (39%), Positives = 232/422 (54%), Gaps = 42/422 (9%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N +  P ++K C  +  IG GEKIH+ +LK  F  D FV +SLI MYS CG +  A+ +F
Sbjct: 9   NHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMF 68

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           +     D+V  N+M+ GYV+ G    A  L EE+     + ++ +WN++I+G+  +GD  
Sbjct: 69  EVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMP----ERDLFSWNSMIAGYVGNGDMT 124

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGL--VHNF---CN--------------------- 331
               LF  M  +    D+VSW  +I G   V N    C                      
Sbjct: 125 AAEDLFNKMPFR----DIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180

Query: 332 -----DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDL 385
                DE    F +M+ +   P  AT+ S+L ACA    + RGK IH       V E D+
Sbjct: 181 RIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDV 239

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
            + +AL+ MYAKCG +  AR +FDKMS R+ V+WNSMI G   HG  D+A+E+F  ME+R
Sbjct: 240 LLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKR 299

Query: 446 KKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             + +  +F  VL+AC H G++  G   F++M+  YKI P+ EHY CMVDLLGRAG + +
Sbjct: 300 GPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKD 359

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
             E+I+ M  E    +WGALL AC+ H N ELAEI AK L ELEP      +LL+++YA 
Sbjct: 360 LEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAA 419

Query: 565 AG 566
            G
Sbjct: 420 EG 421



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 126/249 (50%), Gaps = 6/249 (2%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I  Y + QN+  A  LF+ +P  N+  W  +   Y R   + E + +F +M  + +   
Sbjct: 144 MIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNE 203

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
             ++ SVL AC HL  +  G+ IHS +  +     D  + ++L+ MY+KCG+++ A+ VF
Sbjct: 204 ATLV-SVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVF 262

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           D+M  + +V+ N+M+ GY   G A +AL +  ++      PN  T+  ++S  + SG  +
Sbjct: 263 DKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMIL 322

Query: 298 MVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                F LM RA  +EP V  +  ++  L       +  +  ++M  +G    +A   ++
Sbjct: 323 EGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEG---GTALWGAL 379

Query: 357 LPACASAAN 365
           L AC + +N
Sbjct: 380 LSACRTHSN 388



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 18/181 (9%)

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M+ +   P   T   ++  C    ++  G++IH   +  G E DL VR++L+ MY+ CG 
Sbjct: 1   MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460
           I +AR +F+  S  + VTWNSMI G   +G    A ELF +M ER   D  S+ +++   
Sbjct: 61  IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPER---DLFSWNSMIAGY 117

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
              G +   + LFN M  +  +      + CM+D           Y  ++ M    +LF 
Sbjct: 118 VGNGDMTAAEDLFNKMPFRDIV-----SWNCMID----------GYAQVQNMEIACELFN 162

Query: 521 W 521
           W
Sbjct: 163 W 163



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 3/128 (2%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           ++T L+T Y +C  +  AR +FD++   ++  W ++   Y   G   +A+ +F +M  +G
Sbjct: 241 LSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRG 300

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEK 232
              N      VL AC H   I  G     L ++ ++  +  V     ++D+  + G ++ 
Sbjct: 301 PMPNDATFICVLSACAHSGMILEGWWYFDL-MRRAYKIEPKVEHYGCMVDLLGRAGLMKD 359

Query: 233 AKKVFDEM 240
            +++  +M
Sbjct: 360 LEELIRKM 367


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 266/470 (56%), Gaps = 44/470 (9%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +F+++P+ N   W  +     + GY  EA+ +F +M   G + + F +  V+ AC ++  
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---GSVEKAKKVFDEMVEKDIVAMNAM 251
           +  G+++HS  ++H    D  V   LI+MY+KC   GS+  A+K+FD++++ ++ +  AM
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 252 VSGYVQR-GLATEALNLVEEIGTPRVKPNVVTW--------------------------- 283
           ++GYVQ+ G   EAL+L   +    V PN  T+                           
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 284 --------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                   N+LIS +++SG      K F ++     E +++S+ +VI     N  ++EA 
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDIL----FEKNLISYNTVIDAYAKNLNSEEAL 462

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + F E+  QG   ++ T +S+L   AS   + +G++IH   I  G++ +  V +AL+ MY
Sbjct: 463 ELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMY 522

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           ++CG I  A  +F+ M +RN ++W S+I G A HG+  +A+ELF++M EE  + + +++ 
Sbjct: 523 SRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYI 582

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVL+AC HVGLV  G + F  M  ++ ++PR EHYAC+VD+LGR+G L+EA + I +M  
Sbjct: 583 AVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPY 642

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           + D  VW   LGAC+ HGN+EL + AAK + E EP   A  +LL++LYA+
Sbjct: 643 KADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYAS 692



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 233/505 (46%), Gaps = 45/505 (8%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           ++ +  H     YS  ++  IR R+   G ++H +L  S L   +     LI+ Y++C  
Sbjct: 57  MVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQ 116

Query: 129 IHHARMLFDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
              A  +F  +  + ++  W A+   +A       A+  F +M   G   N +   +  +
Sbjct: 117 WEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATR 176

Query: 188 ACGHLSDIGTGEKIHSLVLKHSF-GTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEKDI 245
           AC     +  G+ I   V+K  +  +D  V   LIDM+ K  G +  A KVF++M E++ 
Sbjct: 177 ACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS-----GDQVMVS 300
           V    M++  +Q G A EA++L  ++     +P+  T + +IS  +       G Q+   
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 301 KL---FQLMRAKG--------------------------VEPDVVSWTSVISGLVHNFCN 331
            +     L R  G                          ++ +V SWT++I+G V     
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 332 D-EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           D EA D F+ M+     P   T SS L ACA+ A +R G+++   A+ +G      V ++
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
           L+ MYA+ G I +AR  FD + E+N +++N++I   A +   +EA+ELFN++E++     
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYE 507
             +F ++L+    +G +  G+++   +    K   +     C  ++ +  R G +  A++
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARV---IKSGLKLNQSVCNALISMYSRCGNIESAFQ 533

Query: 508 MIKTMSTEPDLFVWGALLGACKNHG 532
           + + M  + ++  W +++     HG
Sbjct: 534 VFEDME-DRNVISWTSIITGFAKHG 557



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 177/375 (47%), Gaps = 45/375 (12%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQ---NIHHARMLFDEIPKTNIHRWIALTGA 153
           G+ LH+Q I  GL     +   LI  Y +C    ++  AR +FD+I   N+  W A+   
Sbjct: 290 GQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITG 349

Query: 154 YARRG-YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y ++G Y +EA+ +F  M +  +  N F   S LKAC +L+ +  GE++ +  +K  F +
Sbjct: 350 YVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSS 409

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-- 270
              V +SLI MY++ G ++ A+K FD + EK++++ N ++  Y +   + EAL L  E  
Sbjct: 410 VNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE 469

Query: 271 --------------------IGT--------PRV-----KPNVVTWNTLISGFSKSGDQV 297
                               IGT         RV     K N    N LIS +S+ G+  
Sbjct: 470 DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIE 529

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F+ M  +    +V+SWTS+I+G   +    +A + F +ML +G  P   T  ++L
Sbjct: 530 SAFQVFEDMEDR----NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVL 585

Query: 358 PACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-N 415
            AC+    +  G K         GV   +   + +VD+  + G +SEA    + M  + +
Sbjct: 586 SACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKAD 645

Query: 416 TVTWNSMIFGCANHG 430
            + W + +  C  HG
Sbjct: 646 ALVWRTFLGACRVHG 660



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 196/425 (46%), Gaps = 58/425 (13%)

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           H+   T+ H +H QG   ++      LK C        G  +H  + +     D+  ++S
Sbjct: 48  HKAISTLEHMVH-QGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106

Query: 220 LIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEAL----NLVEE---- 270
           LI +YSKCG  EKA  +F  M   +D+++ +AMVS +    +   AL    +++E     
Sbjct: 107 LISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 271 ----------------------------IGTPRVKPNVVTWNTLISGFSKS-GDQVMVSK 301
                                       I T  ++ +V     LI  F K  GD V   K
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F+ M     E + V+WT +I+ L+      EA D F +M+  G+ P   T+S ++ ACA
Sbjct: 227 VFEKMP----ERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACA 282

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC---GFISEARTLFDKMSERNTVT 418
           +   +  G+++H  AI  G+  D  V   L++MYAKC   G +  AR +FD++ + N  +
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 419 WNSMIFGCANH-GYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           W +MI G     GY +EA++LF  M     + +H +F++ L AC ++  + +G+++F   
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT-- 400

Query: 477 QEKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              + +        C    ++ +  R+GR+ +A +    +  E +L  +  ++ A   + 
Sbjct: 401 ---HAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDAYAKNL 456

Query: 533 NIELA 537
           N E A
Sbjct: 457 NSEEA 461



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 162/329 (49%), Gaps = 11/329 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +    +  G + +  +A  LI+ Y     I  AR  FD + + N+  +  +  
Sbjct: 391 ALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AYA+    +EA+ +F+E+  QG+  + F   S+L     +  IG GE+IH+ V+K     
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKL 510

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++LI MYS+CG++E A +VF++M ++++++  ++++G+ + G AT+AL L  ++ 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
              V+PN VT+  ++S  S  G      K F+ M  + GV P +  +  ++  L  +   
Sbjct: 571 EEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSL 630

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA- 390
            EA      M    +   +    + L AC    N+  GK     A  M +E + H  +A 
Sbjct: 631 SEAIQFINSM---PYKADALVWRTFLGACRVHGNLELGKH----AAKMIIEQEPHDPAAY 683

Query: 391 --LVDMYAKCGFISEARTLFDKMSERNTV 417
             L ++YA      E   +   M E+  +
Sbjct: 684 ILLSNLYASISKWDEVSNIRKAMKEKXLI 712



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 154/308 (50%), Gaps = 15/308 (4%)

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV----EEIGTPRVKPNVVTW 283
           G + KA    + MV +         S ++++ + T + ++     E++    ++ + VT 
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           N+LIS +SK G     + +F+LM   G   D++SW++++S   +N     A  TF +M+ 
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLM---GSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKC-GFI 401
            G+ P     ++   AC++A  +  G  I G  I  G ++ D+ V   L+DM+ K  G +
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTAC 460
             A  +F+KM ERN VTW  MI      GY  EAI+LF + +    + D  + + V++AC
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISAC 281

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA---GRLAEAYEMIKTMSTEPD 517
            ++ L+ LGQ+L +        + R     C++++  +    G +  A ++   +  + +
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVG-CCLINMYAKCSVDGSMCAARKIFDQI-LDHN 339

Query: 518 LFVWGALL 525
           +F W A++
Sbjct: 340 VFSWTAMI 347


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/473 (35%), Positives = 262/473 (55%), Gaps = 47/473 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H   + +G+ +   +  KL+    E  N+H+A  +    PK  +  +  L  AY+  
Sbjct: 5   KQIHGYTLRNGIDQTKILIEKLL----EIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSH 60

Query: 158 GYHQ-EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             HQ +  +++ +M +     N      +  AC  LS    G+ +H+  +K  F  D F 
Sbjct: 61  PQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFA 120

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY+K G++E A+K+FD+M  +                            G P  
Sbjct: 121 ATALLDMYTKVGTLELARKLFDQMPVR----------------------------GVP-- 150

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
                TWN +++G ++ GD  +  +LF+LM ++    +VVSWT++ISG   +    EA  
Sbjct: 151 -----TWNAMMAGHARFGDMDVALELFRLMPSR----NVVSWTTMISGYSRSKKYGEALG 201

Query: 337 TFKEM-LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
            F  M   +G  P + T++SI PA A+   +  G+ +   A   G   +L+V +A+++MY
Sbjct: 202 LFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMY 261

Query: 396 AKCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSF 453
           AKCG I  A  +F+++ S RN  +WNSMI G A HG C + ++L++QM  E    D ++F
Sbjct: 262 AKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTF 321

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
             +L AC H G+VE G+ +F  M   + I+P+ EHY CMVDLLGRAG+L EAYE+I+ M 
Sbjct: 322 VGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMP 381

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +PD  +WGALLGAC  H N+ELAEIAA+ L  LEP +  N ++L+++YA+AG
Sbjct: 382 MKPDSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSNIYASAG 434



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 101/366 (27%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE------------------ 138
           G++LH   I SG       AT L+  YT+   +  AR LFD+                  
Sbjct: 102 GQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHAR 161

Query: 139 -------------IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPS 184
                        +P  N+  W  +   Y+R   + EA+ +F  M  + G+  N   + S
Sbjct: 162 FGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLAS 221

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +  A  +L  +  G+++ +   K+ F  + +V +++++MY+KCG ++ A KVF+      
Sbjct: 222 IFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFN------ 275

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
                                    EIG+ R   N+ +WN++I G +  G+     KL+ 
Sbjct: 276 -------------------------EIGSLR---NLCSWNSMIMGLAVHGECCKTLKLYD 307

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M  +G  PD V++  ++    H    ++    FK M          T  +I+P      
Sbjct: 308 QMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSM---------TTSFNIIPKL---- 354

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNSMI 423
                 E +GC               +VD+  + G + EA  +  +M  + ++V W +++
Sbjct: 355 ------EHYGC---------------MVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALL 393

Query: 424 FGCANH 429
             C+ H
Sbjct: 394 GACSFH 399


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/485 (35%), Positives = 273/485 (56%), Gaps = 23/485 (4%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLI--TFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           ++L + K +HA ++  GL     IA KL+     +   ++ +A  LF   P  ++     
Sbjct: 16  KSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNT 75

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS------VLKACGHLSDIGTGEKIHS 203
           L          Q+++  F EM     ++N F  P       ++KA  +L  +  G ++H 
Sbjct: 76  LIRGLYESDRPQDSLLKFIEM-----RRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHC 130

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
             L H   T  FV ++LI MY +CG V  A+KVFDEM E + +A NAMV+   + G    
Sbjct: 131 QALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKG 190

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
              L + +       N+++WN +++G++K+G+  +  ++F  M  K    D VSW+++I 
Sbjct: 191 GRELFDLMPVR----NLMSWNVMLAGYTKAGELELAREMFLEMPMK----DDVSWSTMIV 242

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G  HN   +EAF  F+E+  +G  P   +++ +L ACA A  +  GK +HG     G+  
Sbjct: 243 GFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAW 302

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDK-MSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            + V +AL+D Y+KCG +  A+ +F++ M+ERN V+W SM+   A HG+ +EAI +F++M
Sbjct: 303 IVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKM 362

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           EE   + D ++F ++L AC H GLVE G   F+ M+  Y I P  EHY CMVDL GRAG+
Sbjct: 363 EESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQ 422

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L +AYE +  M       +W  LLGAC  HG+++LAE   + LSEL+P ++++++LL++ 
Sbjct: 423 LQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNA 482

Query: 562 YANAG 566
           YA AG
Sbjct: 483 YAVAG 487



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 165/360 (45%), Gaps = 20/360 (5%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID--MYSKCGSVEKAKKVFDEMV 241
           S+L  C  L+   T ++IH+ VLK    +D F+   L+     S   S++ A ++F    
Sbjct: 10  SLLNICKSLT---TFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTP 66

Query: 242 EKDIVAMNAMVSGYVQRGLATEA-LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
             D+   N ++ G  +     ++ L  +E        P+  ++  ++   +      +  
Sbjct: 67  NPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGI 126

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF--DTFKEMLSQGFCPTSATISSILP 358
           +L       G++  +   T++IS  ++  C    F    F EM      P +   ++++ 
Sbjct: 127 QLHCQALVHGLDTHLFVGTTLIS--MYGECGFVGFARKVFDEMPE----PNAIAWNAMVT 180

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC    +M+ G+E+     +M V  +L   + ++  Y K G +  AR +F +M  ++ V+
Sbjct: 181 ACCRGGDMKGGRELFD---LMPVR-NLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVS 236

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W++MI G A++GY +EA   F +++ +  + +  S T VL+AC   G +E G+ L   + 
Sbjct: 237 WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFI- 295

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           EK  +         ++D   + G +  A  + + +  E ++  W +++ A   HG+ E A
Sbjct: 296 EKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEA 355


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 165/444 (37%), Positives = 248/444 (55%), Gaps = 21/444 (4%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS------ 184
           +AR L    P+ +   +  L   Y+       +V VF EM  +G     FV P       
Sbjct: 49  YARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKG-----FVFPDSFSFAF 103

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           V+KA  +   + TG ++H   LKH   +  FV ++LI MY  CG VE A+KVFDEM + +
Sbjct: 104 VIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN 163

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +VA NA+++   +      A     EI    +  N  +WN +++G+ K+G+     ++F 
Sbjct: 164 LVAWNAVITACFRGNDVAGA----REIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 219

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M  +    D VSW+++I G+ HN   +E+F  F+E+   G  P   +++ +L AC+ + 
Sbjct: 220 EMPHR----DDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSG 275

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMI 423
           +   GK +HG     G    + V +AL+DMY++CG +  AR +F+ M E R  V+W SMI
Sbjct: 276 SFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMI 335

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G A HG  +EA+ LFN+M       D +SF ++L AC H GL+E G+  F+ M+  Y I
Sbjct: 336 AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHI 395

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P  EHY CMVDL GR+G+L +AY+ I  M   P   VW  LLGAC +HGNIELAE   +
Sbjct: 396 EPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 455

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L+EL+P ++ + +LL++ YA AG
Sbjct: 456 RLNELDPNNSGDLVLLSNAYATAG 479



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 120/256 (46%), Gaps = 5/256 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           ++  Y +   +  A+ +F E+P  +   W  +    A  G   E+   F E+   G+  N
Sbjct: 201 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPN 260

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              +  VL AC        G+ +H  V K  +     V ++LIDMYS+CG+V  A+ VF+
Sbjct: 261 EVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFE 320

Query: 239 EMVEKD-IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            M EK  IV+  +M++G    G   EA+ L  E+    V P+ +++ +L+   S +G   
Sbjct: 321 GMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIE 380

Query: 298 MVSKLF-QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                F ++ R   +EP++  +  ++     +    +A+D   +M      PT+    ++
Sbjct: 381 EGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQM---PIPPTAIVWRTL 437

Query: 357 LPACASAANMRRGKEI 372
           L AC+S  N+   +++
Sbjct: 438 LGACSSHGNIELAEQV 453



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 157/389 (40%), Gaps = 86/389 (22%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L +C +L  +    +IH L +K+   TD++    LI                      
Sbjct: 2   SLLNSCKNLRAL---TQIHGLFIKYGVDTDSYFTGKLI---------------------- 36

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-QVMVSKL 302
               ++  +S        ++AL     +     +P+   +NTL+ G+S+S +    V+  
Sbjct: 37  ----LHCAIS-------ISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVF 85

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
            ++MR   V PD  S+  VI   V NF                                 
Sbjct: 86  VEMMRKGFVFPDSFSFAFVIKA-VENF--------------------------------- 111

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             ++R G ++H  A+  G+E  L V + L+ MY  CG +  AR +FD+M + N V WN++
Sbjct: 112 -RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAV 170

Query: 423 IFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
           I  C        A E+F++M  R   +H S+  +L      G +E  +R+F+ M  +  +
Sbjct: 171 ITACFRGNDVAGAREIFDKMLVR---NHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDV 227

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMS---TEPDLFVWGALLGACKNHGNIELAEI 539
                 ++ M+  +   G   E++   + +      P+      +L AC   G+ E  +I
Sbjct: 228 -----SWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKI 282

Query: 540 AAKHLSELEPE--SAANNMLLTDLYANAG 566
               + +       + NN L+ D+Y+  G
Sbjct: 283 LHGFVEKAGYSWIVSVNNALI-DMYSRCG 310


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/508 (32%), Positives = 272/508 (53%), Gaps = 39/508 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G  +HA ++ SG      +A  L+  Y     +  A ++F  +   +I  W ++   
Sbjct: 176 IKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTG 235

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + + G + EA+  F+++    LK +   I S++ A G L  +  G++IH+  +K+ F ++
Sbjct: 236 FIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSN 295

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--- 270
             V ++LIDMY+KC  +    + FD M  KD+++     +GY Q     +AL L+ +   
Sbjct: 296 ILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQM 355

Query: 271 ---------IGT-----------PRVK-----------PNVVTWNTLISGFSKSGDQVMV 299
                    IG+            ++K            + V  NT+I  + + G     
Sbjct: 356 EGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYA 415

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            ++F+ +  K    DVVSWTS+IS  VHN   ++A + F  M   G  P   T+ SIL A
Sbjct: 416 VRIFESIECK----DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSA 471

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
             S + +++GKEIHG  I  G   +  + + LVDMYA+CG + +A  +F     RN + W
Sbjct: 472 VCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILW 531

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            +MI     HGY + A+ELF +M++ K + DH++F A+L AC H GLV  G+    +M+ 
Sbjct: 532 TAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKC 591

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +Y++ P  EHY C+VDLLGR   L EAY+++K+M  EP   VW ALLGAC+ H N E+ E
Sbjct: 592 EYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGE 651

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           +AA+ L EL+ ++  N +L+++++A  G
Sbjct: 652 VAAEKLLELDLDNPGNYVLVSNVFAANG 679



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 237/481 (49%), Gaps = 44/481 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           L  G  +H   I  G      +   L+  Y +C +I+ AR LFD +  + ++  W ++  
Sbjct: 74  LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIIS 133

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY+  G   EA+ +F EM   G+  N +   + L+AC   S I  G +IH+ +LK     
Sbjct: 134 AYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVL 193

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D +V ++L+ MY + G + +A  +F  +  KDIV  N+M++G++Q GL +EAL    ++ 
Sbjct: 194 DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ 253

Query: 273 TPRVKP-----------------------------------NVVTWNTLISGFSKSGDQV 297
              +KP                                   N++  NTLI  ++K     
Sbjct: 254 NADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMS 313

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              + F LM  K    D++SWT+  +G   N C  +A +  +++  +G    +  I SIL
Sbjct: 314 YGGRAFDLMAHK----DLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSIL 369

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC     + + KEIHG  I  G+  D  +++ ++D+Y +CG I  A  +F+ +  ++ V
Sbjct: 370 LACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVV 428

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +W SMI    ++G  ++A+E+F+ M+E   + D+++  ++L+A C +  ++ G+ +   +
Sbjct: 429 SWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFI 488

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             K  I+  +     +VD+  R G + +AY+ I T +   +L +W A++ A   HG  E 
Sbjct: 489 IRKGFILEGSISNT-LVDMYARCGSVEDAYK-IFTCTKNRNLILWTAMISAYGMHGYGEA 546

Query: 537 A 537
           A
Sbjct: 547 A 547



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 217/472 (45%), Gaps = 69/472 (14%)

Query: 123 YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
           Y +C ++  A M+FD++ + +I  W A+ G Y   G    A+ ++ EM   G+  + +  
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-V 241
           P +LKACG + D+  G +IH L +K+   +  FVV+SL+ +Y+KC  +  A+K+FD M V
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI-----SGFSKSGDQ 296
             D+V+ N+++S Y   G+ TEAL L  E+    V  N  T+   +     S F K G Q
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 297 V--------------MVSKLFQLMRAKGVEP------------DVVSWTSVISGLVHNFC 330
           +              + + L  +    G  P            D+V+W S+++G + N  
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGL 241

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA + F ++ +    P   +I SI+ A      +  GKEIH  AI  G + ++ V + 
Sbjct: 242 YSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNT 301

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLD 449
           L+DMYAKC  +S     FD M+ ++ ++W +   G A +    +A+EL  Q++ E   +D
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVD 361

Query: 450 HLSFTAVLTAC----C------------------------------HVGLVELGQRLFNM 475
                ++L AC    C                                G+++   R+F  
Sbjct: 362 ATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFES 421

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           ++ K  ++  T   +C V   G A +  E +  +K    EPD     ++L A
Sbjct: 422 IECK-DVVSWTSMISCYVH-NGLANKALEVFSSMKETGLEPDYVTLVSILSA 471



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
           MY KCG + +A  +FDKMSER+  TWN+M+ G  ++G    A+E++ +M       D  +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  +L AC  V  +  G  +  +   KY           +V L  +   +  A ++   M
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAI-KYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 513 STEPDLFVWGALLGACKNHG 532
               D+  W +++ A   +G
Sbjct: 120 YVRNDVVSWNSIISAYSGNG 139


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/511 (33%), Positives = 272/511 (53%), Gaps = 40/511 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L++G+ +HA +I +G  +    A  L+  Y++  +I  A ++F ++P+T++  W A  
Sbjct: 216 RDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFI 275

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
                 G+ Q A+ +  +M   GL  N+F + S+LKAC        G +IH  ++K +  
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANAD 335

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D ++   L+DMY+K G ++ AKKVFD + ++D+V  NA++SG        EAL+L   +
Sbjct: 336 SDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRM 395

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
                  N  T                                    N LI  + K    
Sbjct: 396 RKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCL 455

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F+    K    D++++TS+I+ L      ++A   F EML +G  P    +SS+
Sbjct: 456 NYAYRVFE----KHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSL 511

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACAS +   +GK++H   I      D+   +ALV  YAKCG I +A   F  + E+  
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGV 571

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+W++MI G A HG+   A+++F++M +E    +H++ T+VL AC H GLV+  +R FN 
Sbjct: 572 VSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNS 631

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M+E + I    EHYACM+DLLGRAG+L +A E++ +M  + +  VWGALL A + H + E
Sbjct: 632 MKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPE 691

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L  +AA+ L  LEPE +  ++LL + YA+AG
Sbjct: 692 LGRLAAEKLFILEPEKSGTHVLLANTYASAG 722



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 250/553 (45%), Gaps = 86/553 (15%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           Y   ++L  G  +HA L+ SGL         L++FY++C+    AR +FDEIP      W
Sbjct: 14  YAATQSLLQGAHIHAHLLKSGL--FAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSW 71

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            +L  AY+     ++A+  F  M    ++ N FV+P VLK      D G G ++H+L + 
Sbjct: 72  SSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCA---PDAGFGTQLHALAMA 128

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALN 266
              G D FV ++L+ MY   G V++A+ VFDE   E++ V+ N ++S YV+    + A+ 
Sbjct: 129 TGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVK 188

Query: 267 LVEEIGTPRVKPN-----------------------------------VVTWNTLISGFS 291
           +  E+    V+PN                                   V T N L+  +S
Sbjct: 189 VFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYS 248

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           K GD  M + +F     K  E DVVSW + ISG V +  +  A +   +M S G  P   
Sbjct: 249 KLGDIRMAAVVF----GKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVF 304

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T+SSIL ACA +     G++IHG  +    + D ++   LVDMYAK G + +A+ +FD +
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI 364

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQ 470
            +R+ V WN++I GC++     EA+ LF +M +E   ++  +  AVL +   +  +    
Sbjct: 365 PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAIS-DT 423

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE---------------MIKTMST- 514
           R  + + EK   +  +     ++D   +   L  AY                MI  +S  
Sbjct: 424 RQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQC 483

Query: 515 ------------------EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES---AA 553
                             +PD FV  +LL AC +    E  +    HL + +  S   A 
Sbjct: 484 DHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAG 543

Query: 554 NNMLLTDLYANAG 566
           N ++ T  YA  G
Sbjct: 544 NALVYT--YAKCG 554



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 222/471 (47%), Gaps = 37/471 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTGAYA 155
           G  LHA  + +GL     +A  L+  Y     +  ARM+FDE   + N   W  L  AY 
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +      AV VF EM   G++ N F    V+ AC    D+  G K+H++V++  +  D F
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVF 238

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             ++L+DMYSK G +  A  VF ++ E D+V+ NA +SG V  G    AL L+ ++ +  
Sbjct: 239 TANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 276 VKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV----- 311
           + PNV T ++++   + SG                   D  +   L  +    G+     
Sbjct: 299 LVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAK 358

Query: 312 -------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
                  + D+V W ++ISG  H   + EA   F  M  +GF     T++++L + AS  
Sbjct: 359 KVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLE 418

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            +   +++H  A  +G   D HV + L+D Y KC  ++ A  +F+K    + + + SMI 
Sbjct: 419 AISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMIT 478

Query: 425 GCANHGYCDEAIELFNQMEERKKLDHLSF--TAVLTACCHVGLVELGQRLFNMMQEKYKI 482
             +   + ++AI+LF +M  RK LD   F  +++L AC  +   E G+++   + ++ + 
Sbjct: 479 ALSQCDHGEDAIKLFMEM-LRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QF 536

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           M        +V    + G + +A ++  +   E  +  W A++G    HG+
Sbjct: 537 MSDVFAGNALVYTYAKCGSIEDA-DLAFSGLPEKGVVSWSAMIGGLAQHGH 586


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 262/484 (54%), Gaps = 26/484 (5%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA++I  GL +   + ++ +T      N  +   +F+ +   +   W      Y+    
Sbjct: 44  VHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYS 103

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
               V++F  M       + F  PS++KAC  +  +  G   H   ++   G D FV++S
Sbjct: 104 VSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTS 163

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID+Y KCG +  A+KVFDEM E+++V+  AM++GY       EA  L +E+     + N
Sbjct: 164 LIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP----EKN 219

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN-------FCND 332
            V+WN +ISG+ K GD     K+F  M  +    +VVS+T++I G   +       F  +
Sbjct: 220 AVSWNAIISGYVKCGDLRSARKMFDEMPHR----NVVSFTTMIDGYAKSGDMASARFVFE 275

Query: 333 EAFD---------TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE- 382
           EA +          F+        P    + S++ AC+   ++   K +        ++ 
Sbjct: 276 EAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDV 335

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
              HV +AL+DM AKCG +  A  LF++M +R+ +++ SM+ G + HG   +A+ LF++M
Sbjct: 336 HRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRM 395

Query: 443 -EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
             E    D ++FT +LTAC   GLV+ G   F  M+  Y I+P  +HYACMVDLLGRAGR
Sbjct: 396 LNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGR 455

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L EAYE++K+M  EP    WGALLGACK H +IEL E+ A  L ELEP++A N +LL+++
Sbjct: 456 LKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNI 515

Query: 562 YANA 565
           YA A
Sbjct: 516 YAAA 519



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 161/376 (42%), Gaps = 53/376 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ G   H   +  G+     + T LI  Y +C  I  AR +FDE+ + N+  W A+  
Sbjct: 138 GVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIA 197

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA      EA  +F EM  +       +I   +K CG   D+ +  K+    + H    
Sbjct: 198 GYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVK-CG---DLRSARKMFD-EMPHR--- 249

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV-------------------- 252
           +    +++ID Y+K G +  A+ VF+E  E+D+VA +A++                    
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLM 309

Query: 253 SGYVQRG---LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
           S   Q G   LA    + V +      + +V+    LI   +K G     +KLF+ M  +
Sbjct: 310 SACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA--ALIDMNAKCGSMDRATKLFEEMPKR 367

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
               D++S+ S++ GL  + C  +A   F  ML++G  P     + IL AC+     R G
Sbjct: 368 ----DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACS-----RAG 418

Query: 370 KEIHGCAIVMGVEGDLHV------RSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSM 422
               GC     ++ D  +       + +VD+  + G + EA  L   M  E +   W ++
Sbjct: 419 LVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGAL 478

Query: 423 IFGCANHGYCDEAIEL 438
           +  C  H  CD  IEL
Sbjct: 479 LGACKLH--CD--IEL 490



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 177/400 (44%), Gaps = 37/400 (9%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           I ++LKAC   S   T E++H+ +++     D F++S  + + +   +      VF+ + 
Sbjct: 28  ISTLLKACTTTS---TLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVS 84

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK-SGDQVMVS 300
               V  N  + GY +    +  ++L   +      P+  T+ +LI   SK  G +  V+
Sbjct: 85  SPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA 144

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE--AFDTFKEMLSQGFCPTSATISSILP 358
                +R  GV  DV   TS+I   ++  C +   A   F EM  +     +A I+    
Sbjct: 145 FHGSAVRC-GVGGDVFVMTSLID--LYGKCGEILCARKVFDEMGERNVVSWTAMIAGY-- 199

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
             AS +++   +++         E +    +A++  Y KCG +  AR +FD+M  RN V+
Sbjct: 200 --ASFSDLVEARKLFD----EMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVS 253

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-----------------KLDHLSFTAVLTACC 461
           + +MI G A  G    A  +F +  ER                  K D     ++++AC 
Sbjct: 254 FTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACS 313

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
            +G +EL + + + +++    + R    A ++D+  + G +  A ++ + M    DL  +
Sbjct: 314 QMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKR-DLISY 372

Query: 522 GALLGACKNHG-NIELAEIAAKHLSE-LEPESAANNMLLT 559
            +++     HG   +   + ++ L+E L P+  A  ++LT
Sbjct: 373 CSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 412



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 10/206 (4%)

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           T+++IS++L AC + + +   +++H   I  G+  D  + S  + +       S   ++F
Sbjct: 24  TTSSISTLLKACTTTSTL---EQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVF 80

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVE 467
           + +S  +TV WN+ I G + +      + LF +M+    + D  ++ +++ AC  V  V+
Sbjct: 81  NGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVK 140

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            G   F+    +  +         ++DL G+ G +  A ++   M  E ++  W A++  
Sbjct: 141 EGVA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMG-ERNVVSWTAMIAG 198

Query: 528 CKNHGNIELAEIAAKHLSELEPESAA 553
             +  ++    + A+ L +  PE  A
Sbjct: 199 YASFSDL----VEARKLFDEMPEKNA 220


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/511 (33%), Positives = 269/511 (52%), Gaps = 42/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H  ++  G      IA   I FY+    +  A  LFD +   +I  W A+   
Sbjct: 155 LDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISG 214

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +   G   EA+ VF EM  + +  +   I S+L  C  L DI +G  IH   +K     D
Sbjct: 215 FYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFD 274

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++LI+MY+K G +  A+ +F++M  +DIV+ N++++ + Q      AL +  ++ +
Sbjct: 275 LFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHS 334

Query: 274 PRVKPNVVT----------------------------W--------NTLISGFSKSGDQV 297
             V P+++T                            W        N +I  ++K G   
Sbjct: 335 IGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFID 394

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSI 356
              K+F+ +  K    DV+SW S+I+G   N   +EA D +  M    G  P   T  SI
Sbjct: 395 SARKVFEGLPVK----DVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSI 450

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L A +    +++G + HG  I   +  D+ V + LVDMY KCG +++A +LF ++  +++
Sbjct: 451 LTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSS 510

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN++I     HGY  +A++LF +M+ E  K DH++F ++L+AC H GLV+ GQ  F +
Sbjct: 511 VSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQL 570

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQE Y I P  +HY CMVDL GRAG L +A+  +K M   PD+ VWGALLGAC+ H N+E
Sbjct: 571 MQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVE 630

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L    + HL ++E E+    +LL+++YA  G
Sbjct: 631 LVRTVSDHLLKVESENVGYYVLLSNIYAKLG 661



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 238/493 (48%), Gaps = 62/493 (12%)

Query: 86  EIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH 145
            I++    +   K LHA L+VSG  +   ++ KLI  Y    +I HAR+ FD+I   +++
Sbjct: 48  RIFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVY 107

Query: 146 RWIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
            W ++  AYAR G+   AV  F+E +    L+ + +  P V++ACG+L D   G K+H L
Sbjct: 108 TWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCL 164

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           VLK  F  D ++ +S I  YS+ G V  A  +FD M+ +DI   NAM+SG+   G   EA
Sbjct: 165 VLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEA 224

Query: 265 LNLVEEIGTPRVKPNVVT-----------------------------------WNTLISG 289
           L + +E+    V  + VT                                    N LI+ 
Sbjct: 225 LEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINM 284

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           ++K G+      +F  M+ +    D+VSW S+++    N     A   + +M S G  P 
Sbjct: 285 YAKFGELRSAETIFNQMKVR----DIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPD 340

Query: 350 SATISSILPACASAANMRRGKEIHG-----CAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
             T+ S+    A   N    + IHG     C  +     D+ + +A++DMYAK GFI  A
Sbjct: 341 LLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLH----DIALGNAIIDMYAKLGFIDSA 396

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCH 462
           R +F+ +  ++ ++WNS+I G + +G  +EAI++++ M        +  ++ ++LTA   
Sbjct: 397 RKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQ 456

Query: 463 VGLVELGQRLFNMMQEK---YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           +G ++ G +    + +    + I   T    C+VD+ G+ G+LA+A  +   +  +  + 
Sbjct: 457 LGALKQGMKAHGQLIKNFLYFDIFVST----CLVDMYGKCGKLADALSLFYEVPHQSSV- 511

Query: 520 VWGALLGACKNHG 532
            W A++     HG
Sbjct: 512 SWNAIISCHGLHG 524



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 187/420 (44%), Gaps = 54/420 (12%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHH 131
           +S  +     S  + I ++   + SG ++H   I  GL     +   LI  Y +   +  
Sbjct: 234 KSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRS 293

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  +F+++   +I  W +L  A+ +      A+ V+++MH  G+  ++  + S+      
Sbjct: 294 AETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAE 353

Query: 192 LSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
           L +  +   IH  V +   F  D  + +++IDMY+K G ++ A+KVF+ +  KD+++ N+
Sbjct: 354 LGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNS 413

Query: 251 MVSGYVQRGLATEALNLVEEIG-TPRVKPNVVTWNTLISGFSKSGD-------------- 295
           +++GY Q GLA EA+++   +       PN  TW ++++  S+ G               
Sbjct: 414 LITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKN 473

Query: 296 ----QVMVSKLFQLMRAK-GVEPDV------------VSWTSVIS--GLVHNFCNDEAFD 336
                + VS     M  K G   D             VSW ++IS  GL H +   +A  
Sbjct: 474 FLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGL-HGY-GLKAVK 531

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM----GVEGDLHVRSALV 392
            FKEM S+G  P   T  S+L AC+ +  +  G+    C  +M    G+   L     +V
Sbjct: 532 LFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQ---WCFQLMQETYGIRPSLKHYGCMV 588

Query: 393 DMYAKCGFISEARTLFDKMSERNTVT-WNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451
           D++ + G + +A      M  R  V+ W +++  C  H    E +EL      R   DHL
Sbjct: 589 DLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIH----ENVELV-----RTVSDHL 639



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 163/352 (46%), Gaps = 19/352 (5%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQ 173
           +   +I  Y +   I  AR +F+ +P  ++  W +L   Y++ G   EA+ V+  M +  
Sbjct: 379 LGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYS 438

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G   N     S+L A   L  +  G K H  ++K+    D FV + L+DMY KCG +  A
Sbjct: 439 GAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADA 498

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
             +F E+  +  V+ NA++S +   G   +A+ L +E+ +  VKP+ +T+ +L+S  S S
Sbjct: 499 LSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHS 558

Query: 294 GDQVMVSKLFQLMR-AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           G        FQLM+   G+ P +  +  ++         ++AF+  K M  +   P  + 
Sbjct: 559 GLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVR---PDVSV 615

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF---ISEARTLFD 409
             ++L AC    N+   + +    + +  E ++     L ++YAK G    + E R+L  
Sbjct: 616 WGALLGACRIHENVELVRTVSDHLLKVESE-NVGYYVLLSNIYAKLGHWEGVDEVRSLAR 674

Query: 410 KMSERNTVTWNSM-------IFGCAN--HGYCDEAI-ELFNQMEERKKLDHL 451
               + T  W+S+       +F   N  H  C+E   EL N   + K + ++
Sbjct: 675 DRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYV 726



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 12/235 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G   H QLI + L     ++T L+  Y +C  +  A  LF E+P  +   W A+  
Sbjct: 459 ALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIIS 518

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   GY  +AV +F EM  +G+K +     S+L AC H   +  G+    L ++ ++G 
Sbjct: 519 CHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQL-MQETYGI 577

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +     ++D++ + G +EKA      M V  D+    A++          E + LV 
Sbjct: 578 RPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGA----CRIHENVELVR 633

Query: 270 EIGTPRVK---PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
            +    +K    NV  +  L + ++K G    V ++  L R +G++     W+S+
Sbjct: 634 TVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKK-TPGWSSI 687


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/548 (32%), Positives = 278/548 (50%), Gaps = 78/548 (14%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++L  G+ LH  +I  G  +   +  KL+TFY+    +  A ++ +     +   W  L 
Sbjct: 188 KSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLI 247

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            +Y R G+ Q+A++ + +M  +G++ + F  PSVLKACG   D+G G+++H  +      
Sbjct: 248 SSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIK 307

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD--------------------------- 244
               V ++LI MY KCG V  A+ +FD++ E+D                           
Sbjct: 308 WSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSM 367

Query: 245 --------IVAMNAMVSGYVQRGLATEALNLVEE----------------------IGTP 274
                   I+  N +  GY++ G    AL L+ +                      IG  
Sbjct: 368 WAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDA 427

Query: 275 RVKPNVVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           ++   + ++             N+LI+ +S+  D      LFQLM AK     ++SW S+
Sbjct: 428 KLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAK----SLISWNSI 483

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM-- 379
           ISG  H   ++EA    +EML  G  P   TI+S+LP CA  AN++ GKE H C +    
Sbjct: 484 ISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFH-CYMTRRE 542

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
             +  L + +ALVDMYA+ G + EAR +FD + ER+ +T+ SMI G    G    A++LF
Sbjct: 543 DFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLF 602

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
            +M   + K DH++  AVL+AC H GLV  GQ LF  M+  Y + P  EH+ACM DL GR
Sbjct: 603 EEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGR 662

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           AG L +A E+I+ M  +P   +W  L+GAC+ H N E+ E AA+ L E++PE+    +L+
Sbjct: 663 AGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLI 722

Query: 559 TDLYANAG 566
            ++YA AG
Sbjct: 723 ANMYAAAG 730



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 84/181 (46%), Gaps = 3/181 (1%)

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           ISS+L +C    ++  G+++HG  I +G E    +   LV  Y+    + +A  + +  +
Sbjct: 177 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 236

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
             +   WN +I     +G+C +A+  + QM ++  + D+ ++ +VL AC     +  G+ 
Sbjct: 237 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 296

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
           +   +           H A ++ + G+ G++  A ++   +  E D   W +++    + 
Sbjct: 297 VHESINASRIKWSLIVHNA-LISMYGKCGKVGIARDLFDKI-PERDAVSWNSMISVYASM 354

Query: 532 G 532
           G
Sbjct: 355 G 355


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 265/505 (52%), Gaps = 42/505 (8%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G  +HA +   G      + + L+ +Y   +++  A  +F+E+ + ++  W ++  A A
Sbjct: 139 NGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACA 198

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G+  + + +  EM  +G+  N   I S+L ACG    +  G  +++ V K     D  
Sbjct: 199 QCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVD 258

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++LI MY+KCG +  A + F  M  +   + N ++ G+VQ     EAL + EE+    
Sbjct: 259 IRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHG 318

Query: 276 VKPNVVTW-----------------------------------NTLISGFSKSGDQVMVS 300
           V P+ +T                                    N+LI+ ++K GD     
Sbjct: 319 VTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAE 378

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           ++FQ M  K    DVVSWT ++ G V       AF+ F+EM           + S+L AC
Sbjct: 379 RVFQTMTKK----DVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSAC 434

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +    + +G+EIH     M V  DL + SALVDMYAKCG I  A  +F KM  + T++WN
Sbjct: 435 SQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWN 494

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK--KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           +MI G A++GY  EA+ELF+QM E +  K D ++  AVL AC HVG+V+ G R F +M  
Sbjct: 495 AMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMS- 553

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
              ++P TEHY C+VDLLGRAG L EA+  IK M  EP+  +WG+LL AC+ H  ++L +
Sbjct: 554 SLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGK 613

Query: 539 IAAKHLSELEPESAANNMLLTDLYA 563
           +  +H+  + P     ++L+++L+A
Sbjct: 614 VIGQHIVNVAPNDVGVHVLVSNLHA 638



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 240/494 (48%), Gaps = 49/494 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           LH +L+ + L   + +A +LI          ++ +AR +FD + + N   W  +   Y+ 
Sbjct: 36  LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSS 95

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI---GTGEKIHSLVLKHSFGTD 213
               ++A+ VF EM  +G+  + + + +V+ A    + +     G+ IH+LV +  F +D
Sbjct: 96  CEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSD 155

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV+S L++ Y    SV++A KVF+EM E+D+V+  +M+S   Q G   + L ++ E+  
Sbjct: 156 VFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQA 215

Query: 274 PRVKPNVVT------------------W-----------------NTLISGFSKSGDQVM 298
             + PN VT                  W                 N LIS ++K G    
Sbjct: 216 EGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSD 275

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             + FQ M A+  +    SW ++I G V N  + EA   F+EML  G  P   T+ S+L 
Sbjct: 276 ALEAFQAMPARYTK----SWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLS 331

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA    +R+G  +H      G+  D  + ++L++MYAKCG ++ A  +F  M++++ V+
Sbjct: 332 ACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVS 391

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W  M+ G         A  LF +M+  + + H ++  ++L+AC  +G ++ G+ + + ++
Sbjct: 392 WTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIE 451

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG-NIEL 536
           E   +       + +VD+  + G +  A E+ + M  +  L  W A++G   ++G   E 
Sbjct: 452 E-MNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTL-SWNAMIGGLASNGYGKEA 509

Query: 537 AEIAAKHLSELEPE 550
            E+  + L   +P+
Sbjct: 510 VELFDQMLELQDPK 523



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 167/379 (44%), Gaps = 41/379 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A+  G+ ++ Q+   G+     I   LI+ YT+C  +  A   F  +P      W  L 
Sbjct: 236 QAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLI 295

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + +   H+EA+ +F EM + G+  +   + SVL AC  L ++  G  +HS +  +   
Sbjct: 296 DGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGIC 355

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D  + +SLI+MY+KCG +  A++VF  M +KD+V+   MV GYV+    T A NL EE+
Sbjct: 356 CDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEM 415

Query: 272 GTPRVKPNVVTWNTLISG-----------------------------------FSKSGDQ 296
               V  + +   +L+S                                    ++K G  
Sbjct: 416 KIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCI 475

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISS 355
              S++F+ M+ K      +SW ++I GL  N    EA + F +ML  Q   P   T+ +
Sbjct: 476 DTASEIFRKMQHK----QTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKA 531

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           +L ACA    +  G         +GV  D      +VD+  + G + EA     KM  E 
Sbjct: 532 VLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEP 591

Query: 415 NTVTWNSMIFGCANHGYCD 433
           N V W S++  C  H   D
Sbjct: 592 NPVIWGSLLAACRVHHRMD 610



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 100/458 (21%), Positives = 178/458 (38%), Gaps = 123/458 (26%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS---VEKAKKVFDEMVE 242
           L AC   + +    ++H  +++    +D+FV   LI + +   +   +  A+KVFD M +
Sbjct: 24  LDACASRAHLA---ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQ 80

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
                                              PN   WN +I G+S          +
Sbjct: 81  -----------------------------------PNAFVWNCMIRGYSSCEAPRDALAV 105

Query: 303 FQLMRAKGVEPDV---------------VSWTS-------------------VISGLVHN 328
           F+ MR +GV PD                + W S                   V+SGLV+ 
Sbjct: 106 FREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNY 165

Query: 329 FCN----DEAFDTFKEML-------------------------------SQGFCPTSATI 353
           +       EA   F+EM                                ++G  P   TI
Sbjct: 166 YGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTI 225

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S+L AC     +  G+ ++      G+E D+ +R+AL+ MY KCG +S+A   F  M  
Sbjct: 226 ISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPA 285

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           R T +WN++I G   +    EA+ +F +M       D ++  +VL+AC  +G +  G  +
Sbjct: 286 RYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHV 345

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNH 531
            + +++   I         ++++  + G +A A  + +TM T+ D+  W  ++ G  K H
Sbjct: 346 HSYIKDN-GICCDNILTNSLINMYAKCGDMAAAERVFQTM-TKKDVVSWTVMVCGYVKGH 403

Query: 532 G---------NIELAEIAAKHLSELEPESAANNMLLTD 560
                      +++AE+ A  ++ +   SA + +   D
Sbjct: 404 QFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALD 441


>gi|108862694|gb|ABA98288.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 572

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 263/477 (55%), Gaps = 24/477 (5%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KTNIHRWIALTGAYARR 157
           LHA L++ GL    + A  L+       +  HAR +FD +P    N++ W A   AYAR 
Sbjct: 30  LHAHLLIRGLPLPARAAVALVA---SSSSPRHARAVFDSVPAASANVYLWTATISAYARH 86

Query: 158 GYHQ---------EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
                        EAV +F  M   G + N F + SV+K C  +  +  G ++H+ + K 
Sbjct: 87  ASSSSSHALEVAGEAVALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKA 146

Query: 209 SFG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             G +   V ++L+D+Y   G V  A++VFDEM  K++V  N MV+  V+ G     +  
Sbjct: 147 GLGCSSVHVGAALLDLYGNIGLVGDARRVFDEMPVKNVVVGNTMVACNVRAG----DMGA 202

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
             E+     + + ++WNTL+SG+   GD   V +LF  M  + V     SW ++I+    
Sbjct: 203 AREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVN----SWNTMIAACSE 258

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                +    F  M + GF P +AT++ ++ ACA   ++    ++HG      VE + HV
Sbjct: 259 EGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHV 318

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK- 446
           +++L+DMYAKCG IS+A+ LF +   ++TV++N MI   A HG+  +A++LFN M +   
Sbjct: 319 QNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGL 378

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + D ++F  VL+AC H GLVE G+  F +M+  Y +    +HYAC+VDL GRAG + EA+
Sbjct: 379 QPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAH 438

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
             +KTM  +P   VWGALL AC+ H ++++ EIAAK L  +EP++  N +LL +  A
Sbjct: 439 CFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTLA 495


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 274/498 (55%), Gaps = 33/498 (6%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           ++ QLIVSGL +   +  K I       ++++A   F E+ + +I  W A+   Y ++  
Sbjct: 6   VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 65

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
               + ++ +M I  +  N F    VLKACG  S  G G++IH    K+ FG++ FV +S
Sbjct: 66  VDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNS 125

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+ MY+K G +  A+ VFD++ ++ +V+  +++SGYVQ G   EALN+ +E+    VKP+
Sbjct: 126 LVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 185

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE--------------------------- 312
            +   ++++ ++   D      +  L+   G+E                           
Sbjct: 186 WIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFN 245

Query: 313 ----PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
               P+++ W ++ISG  +N   +EA   F+EM+++     S T+ S + A A   ++  
Sbjct: 246 RMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLEL 305

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
            + + G         D  V + L+DMYAKCG I  AR +FD++++++ V W+ MI G   
Sbjct: 306 ARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGL 365

Query: 429 HGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           HG+  EAI L+N+M++     +  +F  +LTAC + GLV+ G  LF++M + + I P  +
Sbjct: 366 HGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPHHQ 424

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           HY+C+VDLLGRAG L +AY+ I +M  +P + VWGALL ACK H  + L EIAA+ L  L
Sbjct: 425 HYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFIL 484

Query: 548 EPESAANNMLLTDLYANA 565
           +P +  + + L++LYA+A
Sbjct: 485 DPYNTGHYVQLSNLYASA 502



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 164/365 (44%), Gaps = 32/365 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H Q    G      +   L++ Y +   I +AR++FD++    +  W ++   Y +
Sbjct: 104 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 163

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   EA+ VF EM    +K +   + SV+ A  ++ D+G G+ IH LV K     +  +
Sbjct: 164 NGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDI 223

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           V SL  MY+K G VE A+  F+ M + +++  NAM+SGY   G   EA+ L  E+ T  +
Sbjct: 224 VISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNI 283

Query: 277 KPNVVTWNTLI--------------------------SGFSKSGDQVMVSKLFQLMRAKG 310
           + + +T  + +                            F  +G   M +K   +  A+ 
Sbjct: 284 RVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARC 343

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     + DVV W+ +I G   +    EA   + EM   G CP   T   +L AC ++  
Sbjct: 344 VFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGL 403

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT-WNSMIF 424
           ++ G E+       G+E      S +VD+  + G++++A      M  +  V+ W +++ 
Sbjct: 404 VKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLS 463

Query: 425 GCANH 429
            C  H
Sbjct: 464 ACKIH 468



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 133/283 (46%), Gaps = 3/283 (1%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           Y     L  GK +H  +   GL     I   L T Y +   +  AR  F+ + K N+  W
Sbjct: 196 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILW 255

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            A+   YA  GY +EA+ +F EM  + ++ +   + S + A   +  +     +   + K
Sbjct: 256 NAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISK 315

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             +  D FV + LIDMY+KCGS+  A+ VFD + +KD+V  + M+ GY   G   EA+ L
Sbjct: 316 SEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICL 375

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
             E+    V PN  T+  L++    SG      +LF LM   G+EP    ++ V+  L  
Sbjct: 376 YNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGR 435

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
               ++A+D    ++S    P  +   ++L AC     +R G+
Sbjct: 436 AGYLNQAYDF---IMSMPIKPGVSVWGALLSACKIHRKVRLGE 475


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/506 (33%), Positives = 260/506 (51%), Gaps = 47/506 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW-IALTGAYAR 156
           K +HAQL+ + + +      K+     + ++  +A + F  I     + + + + G    
Sbjct: 49  KQIHAQLLTNSIHKPNSFLYKI----ADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTA 104

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                 A+  +  M   GLK N    P +  AC +L  +  G   H  V++     D  V
Sbjct: 105 WNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHV 164

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
             SLI MY++CG +  A+KVFDE+ +KD+V+ N+M+SGY +   A EA+ L  E+     
Sbjct: 165 SHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGF 224

Query: 277 KPNVV------------------TW-----------------NTLISGFSKSGDQVMVSK 301
           +PN +                  TW                 + LI  + K GD V   +
Sbjct: 225 QPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARR 284

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M+ K    D V+W ++I+G   N  ++EA   F++M      P   T+  IL ACA
Sbjct: 285 IFDSMKKK----DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACA 340

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           S   +  GK++   A   G + D++V +ALVDMYAKCG +  A  +F  M  +N V+WN+
Sbjct: 341 SIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNA 400

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           MI   A HG   EA+ LF  M         + ++F  VL+AC H GLV+ G+RLF+MM  
Sbjct: 401 MISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSS 460

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + ++P+ EHY+CMVDL  RAG L EA++ + TM  +PD  + GALLGAC+   NI+++E
Sbjct: 461 SFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISE 520

Query: 539 IAAKHLSELEPESAANNMLLTDLYAN 564
              K L ELEP ++ N ++ + LYAN
Sbjct: 521 RVMKLLLELEPSNSGNYVISSKLYAN 546



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 178/376 (47%), Gaps = 35/376 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+++G++ H  +I  GL     ++  LIT Y  C  +  AR +FDEI + ++  W ++  
Sbjct: 142 AVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMIS 201

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++  +  EAV +F EM   G + N   + SVL ACG L D+  G  +   V+++    
Sbjct: 202 GYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + F+ S+LI MY KCG +  A+++FD M +KD V  NAM++GY Q G++ EA+ L +++ 
Sbjct: 262 NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMR 321

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV----------------- 315
                P+ +T   ++S  +  G   +  ++      +G + DV                 
Sbjct: 322 MSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 316 --------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPA 359
                         VSW ++IS L  +    EA   FK M+++G    P   T   +L A
Sbjct: 382 NAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSA 441

Query: 360 CASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTV 417
           C  A  +  G+ + H  +   G+   +   S +VD++++ G + EA      M E+ + V
Sbjct: 442 CVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEV 501

Query: 418 TWNSMIFGCANHGYCD 433
              +++  C      D
Sbjct: 502 ILGALLGACQKRKNID 517


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/507 (33%), Positives = 269/507 (53%), Gaps = 36/507 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH  +I +       +A  L+  Y +   +  AR  F+ +   +   W A+   
Sbjct: 426 LDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVG 485

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +  Y+ EA  +F  M   G+  +   + S++ AC ++ +   G++ H L++K    T 
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTS 545

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               SSLIDMY KCG V  A+ VF  M  +++V++NA+++GY    L  EA++L +EI  
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSHL-EEAIHLFQEIQM 604

Query: 274 PRVKPNVVTWNTLISG---------------------FSKSGDQVMVSKLFQLMRAK--- 309
             +KP  VT+  L+ G                     F  S + V VS L   M ++   
Sbjct: 605 VGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFA 664

Query: 310 ---------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                         +V WT++ISG      +++A   ++ M S    P  AT +S+L AC
Sbjct: 665 DSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRAC 724

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV-TW 419
           A  ++++ G+E+H      G   D    S+L+DMYAKCG +  +  +F +M  RN+V +W
Sbjct: 725 AGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISW 784

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSMI G A +GY +EA+E+F QME++  + D ++F  VL+AC H G V  G+++F++M  
Sbjct: 785 NSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVN 844

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            YK+ PR +H  CMVD+LGR G L EA E I  +  + D  +W  LLGAC+ HG+    +
Sbjct: 845 NYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGK 904

Query: 539 IAAKHLSELEPESAANNMLLTDLYANA 565
            AA  L EL+P+S+++ +LL+ LYA +
Sbjct: 905 RAANKLMELKPQSSSSYVLLSGLYAES 931



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 222/435 (51%), Gaps = 7/435 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL + K++H++ +  G+     +   ++  Y +C N+  A+  F  + K ++  W ++ 
Sbjct: 55  QALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVL 114

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G     V  F  M   G++ N F    VL AC  L DI  G+++H  V K  FG
Sbjct: 115 SMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFG 174

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             +F    LIDMY+KC ++  A+ VFD  +  D V+   +++GYV+ G   EA+ + +++
Sbjct: 175 FRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKM 234

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                 P+ +   T+I+ +   G      KLF  +      P+VV+W  +ISG       
Sbjct: 235 QRVGHVPDQIALVTVINAYVALGRLADARKLFTQIP----NPNVVAWNVMISGHAKRGFA 290

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F E+   G   T +++ S+L A AS + +  G  +H  AI  G++ +++V SAL
Sbjct: 291 EEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSAL 350

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
           V+MYAKC  +  A+ +F+ + ERN V WN+M+ G A +G   E +E F+ M+    + D 
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDE 410

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +FT++ +AC  +  ++ G +L  +M  K K          +VD+  ++G L EA +  +
Sbjct: 411 FTFTSIFSACASLHYLDFGGQLHTVMI-KNKFTSNLFVANALVDMYAKSGALKEARKQFE 469

Query: 511 TMSTEPDLFVWGALL 525
            M    D   W A++
Sbjct: 470 FMKIH-DNVSWNAII 483



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 131/509 (25%), Positives = 234/509 (45%), Gaps = 69/509 (13%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G ++HAQ I  GL     + + L+  Y +C  +  A+ +F+ + + NI  W A+ G 
Sbjct: 325 LNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGG 384

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A+ G  QE +  F  M   G + + F   S+  AC  L  +  G ++H++++K+ F ++
Sbjct: 385 FAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSN 444

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMY+K G++++A+K F+ M   D V+ NA++ GYVQ     EA  +   + +
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504

Query: 274 PRVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMR 307
             V P+ V+  +++S  +     K G Q                      M  K   ++ 
Sbjct: 505 NGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLA 564

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V       +VVS  ++I+G   +   +EA   F+E+   G  PT  T + +L  C  
Sbjct: 565 ARDVFYSMPYRNVVSINALIAGYTMSHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDG 623

Query: 363 AANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
           A  +  G++IHG  +  G +     V  +L+ MY      +++ TLF ++   +  V W 
Sbjct: 624 AFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWT 683

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL------- 472
           ++I G A   + ++A++ +  M     L D  +F +VL AC  +  ++ GQ +       
Sbjct: 684 ALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHT 743

Query: 473 -FNMMQ--------------------EKYKIMPRTE---HYACMVDLLGRAGRLAEAYEM 508
            FNM +                    + +  MPR      +  M+  L + G   EA E+
Sbjct: 744 GFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEI 803

Query: 509 IKTMSTE---PDLFVWGALLGACKNHGNI 534
            K M  +   PD   +  +L AC + G +
Sbjct: 804 FKQMEQQSIIPDEVTFLGVLSACSHAGRV 832



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 196/448 (43%), Gaps = 68/448 (15%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H  +   G    +     LI  Y +C+N+  AR++FD     +   W  L   Y R
Sbjct: 161 GKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVR 220

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  EAV VF +M                +  GH+                    D   
Sbjct: 221 DGFPMEAVKVFDKM----------------QRVGHV-------------------PDQIA 245

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           + ++I+ Y   G +  A+K+F ++   ++VA N M+SG+ +RG A EA++   E+    +
Sbjct: 246 LVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGL 305

Query: 277 KPNVVTWNTLISGFS----------------KSG--DQV--------MVSKLFQLMRAKG 310
           K    +  +++S  +                K G  D V        M +K  ++  AK 
Sbjct: 306 KATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQ 365

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     E ++V W +++ G   N    E  + F  M   G  P   T +SI  ACAS   
Sbjct: 366 VFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHY 425

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G ++H   I      +L V +ALVDMYAK G + EAR  F+ M   + V+WN++I G
Sbjct: 426 LDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVG 485

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
                Y DEA  +F +M     L D +S  ++++AC +V   + GQ+   ++  K  +  
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLV-KVGLDT 544

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTM 512
            T   + ++D+  + G +  A ++  +M
Sbjct: 545 STCAGSSLIDMYVKCGVVLAARDVFYSM 572



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 157/373 (42%), Gaps = 69/373 (18%)

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L  + T + IHS  LK   G    + + ++D+Y KCG+V+ A+K F  + +KD+ A N++
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV--------- 297
           +S Y+  GL    +     +    V+PN  T+  ++S  S       G QV         
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGF 173

Query: 298 ------------MVSKLFQLMRAK-----GVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
                       M +K   L  A+      +  D VSWT++I+G V +    EA   F +
Sbjct: 174 GFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDK 233

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M   G  P    + +++ A                                   Y   G 
Sbjct: 234 MQRVGHVPDQIALVTVINA-----------------------------------YVALGR 258

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           +++AR LF ++   N V WN MI G A  G+ +EAI  F ++++   K    S  +VL+A
Sbjct: 259 LADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSA 318

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
              + ++  G  + +    K  +       + +V++  +  ++  A ++  ++  E ++ 
Sbjct: 319 IASLSMLNYGS-MVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLG-ERNIV 376

Query: 520 VWGALLGACKNHG 532
           +W A+LG    +G
Sbjct: 377 LWNAMLGGFAQNG 389


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/474 (35%), Positives = 261/474 (55%), Gaps = 60/474 (12%)

Query: 109 LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH 168
           L++ + +AT+++          HA  +F  +P  N+H   A+  AYA+   H++AV V+ 
Sbjct: 38  LSQSSYVATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYV 97

Query: 169 EMHIQGLKQ----------NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            M ++ L            + F  P +LKACG L+    G ++H+ V +    + A V +
Sbjct: 98  RM-LRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQN 156

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           SLI+MY++CG +  A+KVFD M EKD                                  
Sbjct: 157 SLIEMYTRCGDLSLARKVFDGMREKD---------------------------------- 182

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVISGL--VHNFCNDEA 334
             V+WNTLIS  ++ G      +LF  M      PD  VVSWT+++SG   V +F    A
Sbjct: 183 -AVSWNTLISAHARMGQMRKARELFHSM------PDKTVVSWTALVSGYTAVGDFAG--A 233

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
            + F++M  +GF P   +I ++LPACA    +  G+ I+      G+ G +++ +AL++M
Sbjct: 234 VEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEM 293

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLS 452
           YAKCG I EA  LF  MSE++ ++W++ I G A HG   EA++LF  M+   ++  + ++
Sbjct: 294 YAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGIT 353

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  +L+AC H GL++ G R F+ M+E+Y + P  EHY C+VDLLGR+GR+  A + I  M
Sbjct: 354 FVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGM 413

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              PD  +WG+LL AC++H +++ A +AA+ L ELEPE   N ++L ++YA AG
Sbjct: 414 PIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAG 467



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 137/307 (44%), Gaps = 36/307 (11%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH---------------------- 130
           A Q G+ +HA +  SG      +   LI  YT C ++                       
Sbjct: 132 ASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLIS 191

Query: 131 -HARM--------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            HARM        LF  +P   +  W AL   Y   G    AV VF +M ++G + +   
Sbjct: 192 AHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVS 251

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           I +VL AC  L  +  G  I++   KH      ++ ++L++MY+KCG +E+A ++F  M 
Sbjct: 252 IVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMS 311

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGFSKSGDQVMVS 300
           EKD+++ +  + G    G A EA+ L E +    RV PN +T+  L+S  S +G      
Sbjct: 312 EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGL 371

Query: 301 KLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           + F  M+ + GVEP V  +  V+  L  +     A DT   M      P      S+L A
Sbjct: 372 RYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGM---PIPPDGKIWGSLLSA 428

Query: 360 CASAANM 366
           C S +++
Sbjct: 429 CRSHSDV 435


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/515 (32%), Positives = 274/515 (53%), Gaps = 45/515 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ++Q G +LH  ++  G    T + T L+  Y++C ++  AR +FDE+P+ ++  W A+  
Sbjct: 61  SIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVS 120

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG---TGEKIHSLVLKHS 209
           AY+RR    +A+++  EM + G +       S+L    +L        G+ IH  ++K  
Sbjct: 121 AYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLG 180

Query: 210 F-GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               +  + +SL+ MY +   +++A+KVFD M EK I++   M+ GYV+ G A EA  L 
Sbjct: 181 IVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLF 240

Query: 269 EEIGTPRVKPNVVTWNTLISG-----------------------------------FSKS 293
            ++    V  + V +  LISG                                   ++K 
Sbjct: 241 YQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKC 300

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G+     ++F L+    +E  ++SWTS+I+G VH     EA D F+ M+     P  AT+
Sbjct: 301 GNLTSARRIFDLI----IEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATL 356

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           ++++ ACA   ++  G+EI     + G+E D  V+++L+ MY+KCG I +AR +F+++++
Sbjct: 357 ATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTD 416

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQR 471
           ++   W SMI   A HG  +EAI LF++M   + +  D + +T+V  AC H GLVE G +
Sbjct: 417 KDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLK 476

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
            F  MQ+ + I P  EH  C++DLLGR G+L  A   I+ M  +    VWG LL AC+ H
Sbjct: 477 YFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIH 536

Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GN+EL E+A   L +  P S+ + +L+ +LY + G
Sbjct: 537 GNVELGELATVRLLDSSPGSSGSYVLMANLYTSLG 571



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 208/436 (47%), Gaps = 54/436 (12%)

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           + +++ W  +       G+  + + ++  M   G+  N    P +LKAC +L  I  G  
Sbjct: 8   RRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTM 67

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H  VLK  F  D FV ++L+DMYSKC  V  A++VFDEM ++ +V+ NAMVS Y +R  
Sbjct: 68  LHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSS 127

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----------KS---------------- 293
             +AL+L++E+     +P   T+ +++SG+S           KS                
Sbjct: 128 MDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVS 187

Query: 294 -GDQVM-----------VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
             + +M             K+F LM     E  ++SWT++I G V      EA+  F +M
Sbjct: 188 LANSLMGMYVQFCLMDEARKVFDLMD----EKSIISWTTMIGGYVKIGHAVEAYGLFYQM 243

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             Q          +++  C    ++     +H   +  G      V + L+ MYAKCG +
Sbjct: 244 QHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNL 303

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
           + AR +FD + E++ ++W SMI G  + G+  EA++LF +M     + +  +   V++AC
Sbjct: 304 TSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSAC 363

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEAYEMIKTMSTEP 516
             +G + +GQ +     E+Y  +   E        ++ +  + G + +A E+ + + T+ 
Sbjct: 364 ADLGSLSIGQEI-----EEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERV-TDK 417

Query: 517 DLFVWGALLGACKNHG 532
           DL VW +++ +   HG
Sbjct: 418 DLTVWTSMINSYAIHG 433



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 12/335 (3%)

Query: 87  IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHR 146
           I +RD  L S   +H+ ++  G      +   LIT Y +C N+  AR +FD I + ++  
Sbjct: 263 IQVRDLLLASS--VHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLS 320

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W ++   Y   G+  EA+ +F  M    ++ N   + +V+ AC  L  +  G++I   + 
Sbjct: 321 WTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIF 380

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
            +   +D  V +SLI MYSKCGS+ KA++VF+ + +KD+    +M++ Y   G+  EA++
Sbjct: 381 LNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAIS 440

Query: 267 LVEEIGTPR-VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISG 324
           L  ++ T   + P+ + + ++    S SG      K F+ M+   G+ P V   T +I  
Sbjct: 441 LFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDL 500

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCP--TSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           L      D A +       QG  P   +     +L AC    N+  G E+    ++    
Sbjct: 501 LGRVGQLDLALNAI-----QGMPPDVQAQVWGPLLSACRIHGNVELG-ELATVRLLDSSP 554

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           G       + ++Y   G   EA  + + M  +  V
Sbjct: 555 GSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLV 589


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 199/581 (34%), Positives = 288/581 (49%), Gaps = 90/581 (15%)

Query: 70  ISRSF--HLSPAAYSERIEIYIRDRAL-------QSGKILHAQLIVSGLARLTQIATKLI 120
           I RS   H SP   S      + DRAL       +  K +HAQ++ +        A++L 
Sbjct: 120 IGRSIVQHSSPTPASA-TATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELF 178

Query: 121 TF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQ 177
           T   ++    + +AR +FD+IP+ N++ W  L  A A      ++V VF  M H      
Sbjct: 179 TAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGP 238

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N F  P ++KA         G+ +H + +K SFG D FV++SLI  Y+ CG ++ A  VF
Sbjct: 239 NKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVF 298

Query: 238 DEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------- 283
            EM+E   KDIV+ N+MV+G+VQ G   +AL+L E +    V PN VT            
Sbjct: 299 -EMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTM 357

Query: 284 ------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                                   N  I  F K G+  +   LF  M  +    DVVSWT
Sbjct: 358 NLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKR----DVVSWT 413

Query: 320 SVISGLV----HNFCND---------------------------EAFDTFKE--MLSQGF 346
           ++I G      H    D                           EA   F+E  +   G 
Sbjct: 414 TIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGA 473

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P   T+ S L ACA    M  G+ IHG      ++ + ++ ++L+DMY+K G + +A  
Sbjct: 474 RPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIE 533

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +F  +  ++   W++MI G A HG  + AIELF  M+E + K + ++FT +L AC H GL
Sbjct: 534 VFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGL 593

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           V+ G+RLF+ M+  Y ++P+T+HY+CMVD+LGRAG L EA + I+ M   P   VWGALL
Sbjct: 594 VDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALL 653

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GAC  HGN+ELAE A   L E+EP +    +LL++LYA  G
Sbjct: 654 GACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTG 694



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G+ +H  +    +     +AT LI  Y++  ++  A  +F  I   ++  W A+  
Sbjct: 492 AMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIA 551

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-------EKIHSLV 205
             A  G  + A+ +F +M    +K N     ++L AC H   +  G       E+++ +V
Sbjct: 552 GLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVV 611

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA- 264
            K          S ++D+  + G +E+A K  + M     +A +A V G +         
Sbjct: 612 PKTKH------YSCMVDVLGRAGHLEEALKFIEGMP----LAPSASVWGALLGACCIHGN 661

Query: 265 LNLVEEIGTP--RVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           L L E+  +    ++P       L+S  ++K+GD   VS+L Q MR  G++ +    +  
Sbjct: 662 LELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIE 721

Query: 322 ISGLVHNF 329
           I G VH F
Sbjct: 722 IDGTVHEF 729


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 279/503 (55%), Gaps = 25/503 (4%)

Query: 76  LSPAA--YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
           L PA   YS  I   I  R L+ GK+LH+  I + L   T +A +LI FY++C +I  A 
Sbjct: 10  LDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAH 69

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
            +F  +P  N H W  +  AY+R G   EA    H +  Q  K N+    S++   GH  
Sbjct: 70  KVFHVLPVKNTHSWNIIISAYSRSGLFNEA----HNLLDQMPKPNLVSYNSLISGLGHHG 125

Query: 194 DIGTGEKIHSLVLKHSFGT--DAFVVSSLIDMYSKCGSVEKAKKVFDEMV----EKDIVA 247
                  +   +LK       D F + SL+   +  G+ E  ++V    +      +I+ 
Sbjct: 126 FRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIII 185

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            NA++  Y + G    + ++   +     + +VV+W ++++ ++++        LF  M+
Sbjct: 186 GNALIDAYGKCGEPDISFSIFSRMP----ERDVVSWTSMVAAYAQASRLEDAHWLFSQMQ 241

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
               E + VSWT++I+G   N   DEA   F++M  +G  P++ T +S+L ACA  A + 
Sbjct: 242 ----EKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIA 297

Query: 368 RGKEIHGCAI---VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           RGKEIHG  I    +    ++ + +AL+DMY KCG +  A TLF  M E++ V+WNS+I 
Sbjct: 298 RGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLIT 357

Query: 425 GCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A +G+ +E++ +F +M E   + +H++F  +L+ACCH GLV  G R+ + M++ Y + 
Sbjct: 358 GFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVC 417

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD-LFVWGALLGACKNHGNIELAEIAAK 542
           PR++HYA M+DLLGR  RL EA  +IK      D + +WGALLGAC+ HGN++LA  AA+
Sbjct: 418 PRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAE 477

Query: 543 HLSELEPESAANNMLLTDLYANA 565
            L +LEP +AA  +++ ++YA A
Sbjct: 478 VLFQLEPGNAARYVMVYNIYAAA 500


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 186/548 (33%), Positives = 279/548 (50%), Gaps = 46/548 (8%)

Query: 59  IFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARL-TQIAT 117
           IF E    + I + S+ +  +A++E   +       + G+ +HA LI + L  +   I  
Sbjct: 338 IFKEMKDLVEINASSYAVLLSAFTEFSNL---KEGKRKGQEVHAYLIRNALVDVWILIGN 394

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            L+  Y +C  I +AR +F  +P  +   W ++          +EAV  FH M   G+  
Sbjct: 395 ALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVP 454

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           + F + S L +C  L  I  G++IH   +K     D  V ++L+ +Y++   +E+ +KVF
Sbjct: 455 SKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVF 514

Query: 238 DEMVEKDIVAMNAMVSGY-VQRGLATEALNLVEEIGTPRVKPNVVTW------------- 283
             M E D V+ N+ +           +A+    E+     KPN VT+             
Sbjct: 515 FLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLL 574

Query: 284 ----------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
                                 NTL++ + K         +F  M  +    D VSW ++
Sbjct: 575 ELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSER---RDEVSWNAM 631

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ISG +HN    +A      M+ +G      T++++L ACAS A + RG E+H CAI   +
Sbjct: 632 ISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACL 691

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E ++ V SALVDMYAKCG I  A   F+ M  RN  +WNSMI G A HG+  +A++LF Q
Sbjct: 692 EAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQ 751

Query: 442 MEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M++  +L DH++F  VL+AC HVGLV+ G   F  M E Y++ PR EH++CMVDLLGRAG
Sbjct: 752 MKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAG 811

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGAC--KNHGNIELAEIAAKHLSELEPESAANNMLL 558
            + +  E IKTM   P+  +W  +LGAC   N  N EL   AAK L ELEP +A N +LL
Sbjct: 812 DVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLL 871

Query: 559 TDLYANAG 566
           ++++A  G
Sbjct: 872 SNMHAAGG 879



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 215/488 (44%), Gaps = 77/488 (15%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LH Q+  +GL         L+  +    N+  A+ LFDE+P+ N+  W  L   YA+ G 
Sbjct: 61  LHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGM 120

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD--IGTGEKIHSLVLKHSFGTDAFVV 217
             EA  +F  +   GL  N + I S L+AC  L    +  G +IH L+ K  + +D  + 
Sbjct: 121 PDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLS 180

Query: 218 SSLIDMYSKC-GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV----EEIG 272
           + L+ MYS C  S++ A++VF+E+  K   + N+++S Y +RG A  A  L      E  
Sbjct: 181 NVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREAT 240

Query: 273 TPRVKPNVVTW-------------------------------------NTLISGFSKSGD 295
               +PN  T+                                     + L+SGF++ G 
Sbjct: 241 ELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGL 300

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                 +F+ M  +    + V+   ++ GL      +EA   FKEM        +++ + 
Sbjct: 301 IDSAKMIFEQMDDR----NAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAV 355

Query: 356 ILPACASAANM----RRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +L A    +N+    R+G+E+H   I    V+  + + +ALV++YAKC  I  AR++F  
Sbjct: 356 LLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQL 415

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELG 469
           M  ++TV+WNS+I G  ++   +EA+  F+ M     +    S  + L++C  +G + LG
Sbjct: 416 MPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLG 475

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDL----------LGRAGRLAEAYEMIKTMSTEPDLF 519
           Q++              E   C +DL          L       E Y+ +  +  E D  
Sbjct: 476 QQI------------HGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQV 523

Query: 520 VWGALLGA 527
            W + +GA
Sbjct: 524 SWNSFIGA 531



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 226/488 (46%), Gaps = 55/488 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ-NIHHARMLFDEIPKTNIHRWIALTG 152
           L+ G  +H  +  S  A    ++  L++ Y+ C  +I  AR +F+EI       W ++  
Sbjct: 158 LKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIIS 217

Query: 153 AYARRGYHQEAVTVFHEMHIQGL----KQNIFVIPSVLKACGHLSDIGTG--EKIHSLVL 206
            Y RRG    A  +F  M  +      + N +   S++     L D G    E++ + + 
Sbjct: 218 VYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIE 277

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K SF  D +V S+L+  +++ G ++ AK +F++M +++ V MN ++ G  ++    EA  
Sbjct: 278 KSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAK 337

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFS---------KSGDQVMV------------------ 299
           + +E+    V+ N  ++  L+S F+         + G +V                    
Sbjct: 338 IFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNAL 396

Query: 300 -------------SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
                          +FQLM +K    D VSW S+ISGL HN   +EA   F  M   G 
Sbjct: 397 VNLYAKCNAIDNARSIFQLMPSK----DTVSWNSIISGLDHNERFEEAVACFHTMRRNGM 452

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P+  ++ S L +CAS   +  G++IHG  I  G++ D+ V +AL+ +YA+   + E + 
Sbjct: 453 VPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQK 512

Query: 407 LFDKMSERNTVTWNSMIFGCA-NHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVG 464
           +F  M E + V+WNS I   A +     +AI+ F   M+   K + ++F  +L+A   + 
Sbjct: 513 VFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLS 572

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           L+ELG+++  ++  K+ +         ++   G+  ++ +   +   MS   D   W A+
Sbjct: 573 LLELGRQIHALIL-KHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAM 631

Query: 525 LGACKNHG 532
           +    ++G
Sbjct: 632 ISGYIHNG 639


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 253/479 (52%), Gaps = 45/479 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTE--CQNIHHARMLFDEIPKTNIHRWIALT 151
           L   K +H  ++  GL +   I TKLI   T+       +AR + + +   N   W A+ 
Sbjct: 62  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVI 121

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA  G   EA+ ++  M  + +    F   ++LKACG + D+  G + H+   +    
Sbjct: 122 RGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF 181

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
              +V +++IDMY KC S++ A+KVFDEM E+D                           
Sbjct: 182 CFVYVGNTMIDMYVKCESIDCARKVFDEMPERD--------------------------- 214

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                   V++W  LI+ +++ G+    ++LF+ +  K    D+V+WT++++G   N   
Sbjct: 215 --------VISWTELIAAYARVGNMECAAELFESLPTK----DMVAWTAMVTGFAQNAKP 262

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV--RS 389
            EA + F  M   G      T++  + ACA     +        A   G     HV   S
Sbjct: 263 QEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGS 322

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKK 447
           AL+DMY+KCG + EA  +F  M+ +N  T++SMI G A HG   EA+ LF+ M  +   K
Sbjct: 323 ALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIK 382

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            + ++F   L AC H GLV+ G+++F+ M + + + P  +HY CMVDLLGR GRL EA E
Sbjct: 383 PNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALE 442

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +IKTMS EP   VWGALLGAC+ H N E+AEIAA+HL ELEP+   N +LL+++YA+AG
Sbjct: 443 LIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAG 501



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
           TF E+ +Q        +SS++       N+ + K+IHG  +  G++   ++ + L+    
Sbjct: 37  TFSEISNQ----KELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLT 92

Query: 397 KCGFISE--ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT 454
           K G   +  AR + + +  RN   W ++I G A  G  DEAI ++  M  ++++  +SFT
Sbjct: 93  KLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCM-RKEEITPVSFT 151

Query: 455 --AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
             A+L AC  +  + LG R F+    + +          M+D+  +   +  A ++   M
Sbjct: 152 FSALLKACGTMKDLNLG-RQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEM 210

Query: 513 STEPDLFVWGALLGACKNHGNIELA 537
             E D+  W  L+ A    GN+E A
Sbjct: 211 P-ERDVISWTELIAAYARVGNMECA 234


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 158/481 (32%), Positives = 268/481 (55%), Gaps = 45/481 (9%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R ++    K +HA +IV GL++ + + TK++    +  ++ +A  LF+++   N+  + +
Sbjct: 19  RVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNS 78

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           +  AY     + + + ++ ++  + ++  + F  P + K+C  L     G+++H  + K 
Sbjct: 79  IIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYK- 137

Query: 209 SFGTDAFVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
            FG    VV+  +LIDMY K   +  A KVFDEM E+D                      
Sbjct: 138 -FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERD---------------------- 174

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                        V++WN+L+SG+++ G       LF LM    ++  +VSWT++ISG  
Sbjct: 175 -------------VISWNSLLSGYARLGQMKKAKGLFHLM----IDKTIVSWTAMISGYT 217

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
              C  EA D F+EM   G  P   ++ S+LP+CA   ++  GK IH  A   G+     
Sbjct: 218 GIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTG 277

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           V +AL++MY+KCG +S+A  LF++   ++ ++W++MI G A HG    A E F +M+  K
Sbjct: 278 VCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAK 337

Query: 447 -KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            K + ++F  +L+AC HVGL + G + F+MM++ Y+I P+ EHY C++D+L RAG+L  A
Sbjct: 338 VKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERA 397

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            E+ KTM  +PD  +WG+LL +C+  GN+++A +A  HL E+EP+   N +LL ++YA+ 
Sbjct: 398 VEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADL 457

Query: 566 G 566
           G
Sbjct: 458 G 458



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 16/190 (8%)

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           +P      +    K+IH C IV G+     + + +VD+  K G +  A  LF+++S  N 
Sbjct: 14  IPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNV 73

Query: 417 VTWNSMIFGCA-NHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVELGQRL 472
             +NS+I     N  YCD  I ++ Q+  RK +   D  +F  +  +C  +G   LG+++
Sbjct: 74  FLYNSIIRAYTHNSLYCD-VIRIYKQL-LRKTIEFPDRFTFPFMFKSCASLGSCYLGKQV 131

Query: 473 FNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
              +   YK  PR    TE+   ++D+  +   L +A+++   MS E D+  W +LL   
Sbjct: 132 HGHL---YKFGPRFHVVTEN--ALIDMYMKFDDLVDAHKVFDEMS-ERDVISWNSLLSGY 185

Query: 529 KNHGNIELAE 538
              G ++ A+
Sbjct: 186 ARLGQMKKAK 195



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK +H      GL + T +   LI  Y++C  +  A  LF++    ++  W  +  
Sbjct: 256 SLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMIS 315

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA  G    A   F EM    +K N      +L AC H+     G K   + ++  +  
Sbjct: 316 GYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDM-MRQDYQI 374

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALN 266
           +  +     LID+ ++ G +E+A ++   M V+ D     +++S    +G   +A  A++
Sbjct: 375 EPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMD 434

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
            + E+  P    N V    + +   K  D   VS+L +++R + ++
Sbjct: 435 HLVEV-EPDDMGNYVLLANIYADLGKWED---VSRLRKIIRKENMK 476


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 255/451 (56%), Gaps = 21/451 (4%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+  Y     I  AR LFD +P+ N+     +   Y R    +EA  +F EM  +     
Sbjct: 242 LLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISW 301

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             +I  + +A       G  ++   L+ K SF   A   ++L+  Y +   V  A+++FD
Sbjct: 302 TTIISGLARA-------GKLQEAKDLLDKMSFNCVA-AKTALMHGYLQRNMVNDARQIFD 353

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQ 296
            M   D V  N M+SGYVQRG+  EA+ L + +      PN   V+WNT+I+G+++ G  
Sbjct: 354 GMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRM------PNKDTVSWNTMIAGYAQGGQM 407

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +F+ M  K    + VSW SVISG V N    +AF  F  M         +T +S 
Sbjct: 408 RKAIGIFRRMSRK----NTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASC 463

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+ A +  G+++H   +  G   DL  R+AL+  YAKCG + EA+ +FD+M  ++ 
Sbjct: 464 LRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDI 523

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN+++ G A++G   EAI +F +ME    + D ++F  +L+AC   GL++ G   FN 
Sbjct: 524 VSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAGLIDEGLGFFNS 583

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M E+Y + P  EHYACM DLLGRAG+L EA+E+++ M  +P+  VWGALLGAC+ + N E
Sbjct: 584 MTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACQMYKNHE 643

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           LA +AA+ LSELEP  A+N +LL+++ A AG
Sbjct: 644 LARLAAEKLSELEPCRASNYVLLSNISAEAG 674



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 191/443 (43%), Gaps = 45/443 (10%)

Query: 97  GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G+I  A+ +  G+     ++   +I   ++   +  AR LFD +P  +   W  +   YA
Sbjct: 63  GRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYA 122

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           R G  + A  V   M           + S     G   D          +L+     D F
Sbjct: 123 RAGELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVK-------LLREMPAPDLF 175

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             +S +   ++ G + +A + FDEMVEKD+V+ N M+ G+V+ G    A +    I +  
Sbjct: 176 SWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIES-- 233

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
             PNVV+W TL++G+ ++G       LF  M     E +VV+   ++ G V     +EA 
Sbjct: 234 --PNVVSWVTLLNGYCRAGRISDARDLFDRM----PERNVVACNVMLDGYVRLSRLEEAC 287

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI-----HGCAIVMGVEGDLHVRSA 390
             F EM  +     S + ++I+   A A  ++  K++       C         +  ++A
Sbjct: 288 KLFDEMPGK----NSISWTTIISGLARAGKLQEAKDLLDKMSFNC---------VAAKTA 334

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450
           L+  Y +   +++AR +FD M   +TV WN+MI G    G  +EA+ LF +M  +   D 
Sbjct: 335 LMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNK---DT 391

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE--- 507
           +S+  ++      G +     +F  M  K      T  +  ++    + G   +A+    
Sbjct: 392 VSWNTMIAGYAQGGQMRKAIGIFRRMSRK-----NTVSWNSVISGFVQNGLFVDAFHHFM 446

Query: 508 MIKTMSTEPDLFVWGALLGACKN 530
           +++  +   D   + + L AC N
Sbjct: 447 LMRRGTNRADWSTYASCLRACAN 469



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 186/425 (43%), Gaps = 46/425 (10%)

Query: 120 ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
           +T       +  AR LFD +P+ N   + ++  A AR G   EA  +F  M      +N 
Sbjct: 25  LTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMP----SRNA 80

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
               +++ A   LSD G       L  +     D F  + ++  Y++ G +E A+ V D 
Sbjct: 81  VSWNAMIAA---LSDHGRVADARGLFDRMP-SRDDFSWTVMVSCYARAGELELARDVLDR 136

Query: 240 MV-EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
           M  +K     NAM+SGY + G   +A+ L+ E+      P++ +WN+ ++G ++SG  V 
Sbjct: 137 MPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPA----PDLFSWNSALAGLTQSGQMVR 192

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             + F  M    VE D+VSW  ++ G V     D A   F  + S    P   +  ++L 
Sbjct: 193 AVQFFDEM----VEKDMVSWNLMLEGFVRAGDLDAAASFFGRIES----PNVVSWVTLLN 244

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
               A  +   +++         E ++   + ++D Y +   + EA  LFD+M  +N+++
Sbjct: 245 GYCRAGRISDARDLFDRM----PERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSIS 300

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF------TAVLTACCHVGLVELGQRL 472
           W ++I G A  G   EA +L         LD +SF      TA++       +V   +++
Sbjct: 301 WTTIISGLARAGKLQEAKDL---------LDKMSFNCVAAKTALMHGYLQRNMVNDARQI 351

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ M+     +  T  +  M+    + G L EA  + + M  + D   W  ++      G
Sbjct: 352 FDGME-----VHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNK-DTVSWNTMIAGYAQGG 405

Query: 533 NIELA 537
            +  A
Sbjct: 406 QMRKA 410



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 8/201 (3%)

Query: 57  NGIFIEAHYKMPIISRSFHLSP-AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG+F++A +   ++ R  + +  + Y+  +       AL  G+ LH+ L+ SG       
Sbjct: 435 NGLFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFA 494

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
              LI+ Y +C  +  A+ +FDE+   +I  W AL   YA  G   EA++VF EM   G+
Sbjct: 495 RNALISTYAKCGRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGV 554

Query: 176 KQNIFVIPSVLKACGH--LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           + +      +L AC    L D G G   +S+  ++S    A   + + D+  + G + +A
Sbjct: 555 RPDEVTFVGILSACSRAGLIDEGLG-FFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEA 613

Query: 234 KKVFDEMVEKDIVAMNAMVSG 254
                E+V+   +  NA V G
Sbjct: 614 F----ELVQGMQIQPNAGVWG 630


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 178/570 (31%), Positives = 294/570 (51%), Gaps = 50/570 (8%)

Query: 43  SCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAA--------YSERIEIYIRDRAL 94
           SCS      G   I+G+ ++  +   +++ S  L   A            +E++   +  
Sbjct: 167 SCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKA 226

Query: 95  QSGKI-LHAQLIVSGLARLTQIATKLITFYTECQNIHH-ARMLFDEIPKTNIHRWIALTG 152
             G + LH   + +       I T  +  Y +C N+   +  LF+ +P  N+  + A+  
Sbjct: 227 GVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIV 286

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YAR     EA+ +F  +   GL  +   +    +AC  +     G ++H L +K    +
Sbjct: 287 GYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQS 346

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++++DMY KCG++ +A  VF+EMV +D V+ NA+++ + Q G   + L+L   + 
Sbjct: 347 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 406

Query: 273 TPRVKPNVVTWNT-----------------------------------LISGFSKSGDQV 297
              ++P+  T+ +                                   LI  +SK G   
Sbjct: 407 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMME 466

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              KL   +     E  VVSW ++ISG      ++EA  TF +ML  G  P + T ++IL
Sbjct: 467 KAEKLHDRL----AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATIL 522

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             CA+   +  GK+IH   I   ++ D ++ S LVDMY+KCG + + + +F+K   R+ V
Sbjct: 523 DTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFV 582

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TWN+M+ G A HG  +EA+++F  M+ E  K +H +F AVL AC H+GLVE G   F+ M
Sbjct: 583 TWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSM 642

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
              Y + P+ EHY+C+VD++GR+G++++A E+I+ M  E D  +W  LL  CK HGN+E+
Sbjct: 643 LSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEV 702

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE AA  + +LEPE +A  +LL+++YANAG
Sbjct: 703 AEKAAYSILQLEPEDSAAYVLLSNIYANAG 732



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 139/567 (24%), Positives = 239/567 (42%), Gaps = 110/567 (19%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL  GK  HA++I++       +   LI  Y +C ++  A  +FD +P+ +   W A+ 
Sbjct: 56  KALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAML 115

Query: 152 GAYARRGYHQEAVTVFHEMHIQG-----------------LKQNIFVIPSVLKACGHLSD 194
             YA RG    A  +F  M   G                   +  F +  VLK+C  L D
Sbjct: 116 FGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV--VLKSCSSLED 173

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC----GSVEKAKKVFDEMVEKDIVAMN- 249
            G G +IH L +K  F  D    S+L+DMY+KC      +    ++F EM +  + A+  
Sbjct: 174 HGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQL 233

Query: 250 -----------AMVSGYVQRGLATEALNLVE---EIGTPRVKPNVVTWNTLISGFSKSGD 295
                       +V G     +  +  NL +   ++       N+ ++N +I G+++S  
Sbjct: 234 HGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDK 293

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWT------SVISG-----LVH----------NFCND-- 332
            +    +F+L++  G+  D VS +      +VI G      VH          N C    
Sbjct: 294 GIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANA 353

Query: 333 ------------EAFDTFKEMLSQ-------------------------------GFCPT 349
                       EA   F+EM+S+                               G  P 
Sbjct: 354 ILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPD 413

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
             T  S+L ACA    +  G EIH   I   +  D  V  AL+DMY+KCG + +A  L D
Sbjct: 414 EFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHD 473

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVEL 468
           +++E+  V+WN++I G +     +EA + F++M E     D+ ++  +L  C ++  VEL
Sbjct: 474 RLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVEL 533

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G+++   + +K ++       + +VD+  + G + + +++I   +   D   W A++   
Sbjct: 534 GKQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQD-FQLIFEKAPNRDFVTWNAMVCGY 591

Query: 529 KNHGNIELAEIAAKHLSELEPESAANN 555
             HG   L E A K    ++ E+   N
Sbjct: 592 AQHG---LGEEALKIFEYMQLENVKPN 615



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 164/380 (43%), Gaps = 60/380 (15%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           + + C     +  G++ H+ ++   F    FV + LI MY KC  +  A KVFD M ++D
Sbjct: 48  IFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRD 107

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV-----------------TWNTLI 287
            V+ NAM+ GY  RG    A  L + +  P     VV                 T+  ++
Sbjct: 108 TVSWNAMLFGYAGRGDIGVAQKLFDAM--PGTGCGVVELFDFRMGRMGTVFDRTTFAVVL 165

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC--NDE---AFDTFKEML 342
              S   D     ++  L    G + DVV+ ++++  +    C  ND+     + FKEM 
Sbjct: 166 KSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLD-MYAKCCVQNDDLRGGLELFKEMQ 224

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
             G       + ++              ++HG A+      D+ + +A +DMY KC  +S
Sbjct: 225 KAG-------VGAL--------------QLHGHALKTDFGTDVVIGTATLDMYMKCNNLS 263

Query: 403 E-ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
           + +  LF+ +   N  ++N++I G A      EA+ +F  +++    LD +S +    AC
Sbjct: 264 DCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRAC 323

Query: 461 CHV-----GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
             +     GL   G  + ++ Q    +         ++D+ G+ G L EA  + + M + 
Sbjct: 324 AVIKGDLEGLQVHGLSMKSLCQSNICVA------NAILDMYGKCGALVEACLVFEEMVSR 377

Query: 516 PDLFVWGALLGACKNHGNIE 535
            D   W A++ A + +GN E
Sbjct: 378 -DAVSWNAIIAAHEQNGNEE 396



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 348 PTSA-TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
           PT   T S I   C+    +  GK+ H   I+   +  + V + L+ MY KC  +  A  
Sbjct: 39  PTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFK 98

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
           +FD M +R+TV+WN+M+FG A  G    A +LF+ M
Sbjct: 99  VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAM 134


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 247/450 (54%), Gaps = 40/450 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I T LI  Y  C+ I  AR+LFD++   +   W  +   Y + G++ +A+ +F +M    
Sbjct: 158 IQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSD 217

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +K +  ++ +VL ACGH  ++  G  IH  V  + +  D+ + ++LI+MY+ CG+++ A+
Sbjct: 218 MKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLAR 277

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           K++D +  K ++   AM+SGY + G+  +A  + +++                       
Sbjct: 278 KIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQM----------------------- 314

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                           +E D+V W+++ISG   +    EA   F EML +   P   T+ 
Sbjct: 315 ----------------IERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITML 358

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++ AC+    + +   IH      G    L V +AL+DMYAKCG + +AR +F+ M  +
Sbjct: 359 SVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRK 418

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           N ++W+SMI   A HG  D AI+LF +M+E   + + ++F  VL AC H GLVE G++LF
Sbjct: 419 NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLF 478

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + M  ++ I P  EHY CMVDL  RA  L +A E+I+TM   P++ +WG+L+ AC+ HG 
Sbjct: 479 SSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGE 538

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYA 563
            EL E AAK L ELEP+     ++L+++YA
Sbjct: 539 AELGEFAAKRLLELEPDHDGALVVLSNIYA 568


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 263/473 (55%), Gaps = 9/473 (1%)

Query: 98  KILHAQLIVSGLARLT-QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           K LH +++     R    +  KL+  Y  C     AR +FDEI   N+  +  +  +Y  
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              +++A+ V+  M+ QG   +++  P VLKA      +  G +IH  VLK     + +V
Sbjct: 98  NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYV 157

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            + LI MY KC S+++A++V DE+  +D+V+ N+MVS Y Q G   +AL L  E+    +
Sbjct: 158 GNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNL 217

Query: 277 KPNVVTWNTLISGFSK-SGDQVM-VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
           KPN  T  +L+   +  + D V+ V ++F  +  K     V+SW  +I+  V+N    EA
Sbjct: 218 KPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKS----VISWNVMIAMYVNNSMPKEA 273

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
              + +M + G  P   +I S+LPA    + +  G+ +H  A    +  +L + +AL+DM
Sbjct: 274 VVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDM 333

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSF 453
           YAKCG + +AR +F++M  R+ V+W S+I      G   +A+ +F +M       D ++F
Sbjct: 334 YAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAF 393

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
            +VL AC H GL++ G+  FN+M E   I P+ EH+AC+VDLLGRAG++ EAY  I+ M 
Sbjct: 394 VSVLAACSHAGLLDDGRYYFNLMAE-CGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMP 452

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            EPD  VWG LL AC+ + N+ +  +AA  L  L PE +   +LL+++YA AG
Sbjct: 453 LEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAG 505



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 19/346 (5%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  +L  G  +H  ++  GL     +   LI  Y +C+++  A+ + DEIP  ++  W +
Sbjct: 132 RSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNS 191

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   YA+ G   +A+ +  EM    LK N   + S+L A  +     T + +  L +K  
Sbjct: 192 MVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNT----TSDNV--LYVKEM 245

Query: 210 F--GTDAFVVS--SLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLA 261
           F   T   V+S   +I MY      ++A  ++ +M    VE D+V++ +++  Y      
Sbjct: 246 FLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSAL 305

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           +    + +     ++ PN++  N LI  ++K G       +F  M+ +    DVVSWTS+
Sbjct: 306 SLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFR----DVVSWTSI 361

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           IS         +A   F EM + G  P S    S+L AC+ A  +  G+         G+
Sbjct: 362 ISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGI 421

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGC 426
              L   + +VD+  + G I EA     +M  E +   W  ++  C
Sbjct: 422 TPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSAC 467


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 265/510 (51%), Gaps = 42/510 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G  +H  +   G+A    I   L++ Y + + +  AR +F ++   +   W  +  
Sbjct: 237 AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMIC 296

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G H+ +V +F +M I G   ++  I S ++ACG   D+  G+ +H  ++   F  
Sbjct: 297 GYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFEC 355

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    + LIDMY+KCG +  A++VFD    KD V  N++++GY Q G   E L   + + 
Sbjct: 356 DTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMK 415

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
             R KP+ VT+                                   N+L+  ++K G+  
Sbjct: 416 MER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMD 474

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
            + K+F  M A     D++SW +VI+  VH       F    EM ++G  P  AT+  IL
Sbjct: 475 DLLKVFSYMSAH----DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGIL 530

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P C+  A  R+GKEIHG     G E ++ + +AL++MY+KCG +     +F  M E++ V
Sbjct: 531 PMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVV 590

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TW ++I     +G   +A++ F  ME    L D ++F A + AC H G+V+ G R F+ M
Sbjct: 591 TWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRM 650

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +  Y + PR EHYAC+VDLL R+G LA+A E I +M  +PD  +WGALL AC+  GN  +
Sbjct: 651 KTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNI 710

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           A+  +K + EL  +     +L++++YA  G
Sbjct: 711 AQRVSKKILELNSDDTGYYVLVSNIYATLG 740



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 224/462 (48%), Gaps = 35/462 (7%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYAR 156
           + +H+ +I SGL+     + KLI+ Y + ++   +  +F  I P  N++ W ++  A   
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   +A+  + EM  + L+ + F  PSV+ +C  + D+  G  +H   ++  F +D ++
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LIDMYS+   ++ A+ VF+EM  +D V+ N+++SGY   G   +AL++  +     +
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 277 KPNVVTWNT-------------------LISGFSKSGDQV----MVSKLFQLMR------ 307
            P+  T ++                   +I     +GD +    ++S  F+  R      
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARR 278

Query: 308 --AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
             +K    D V+W ++I G      ++ +   F +M+  GF P   +I+S + AC  + +
Sbjct: 279 VFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGD 337

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           ++ GK +H   I  G E D    + L+DMYAKCG +  A+ +FD    +++VTWNS+I G
Sbjct: 338 LQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLING 397

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
               GY  E +E F  M+  +K D ++F  +L+    +  +  G R  +    K+     
Sbjct: 398 YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQG-RGIHCDVIKFGFEAE 456

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
                 ++D+  + G + +  ++   MS   D+  W  ++ +
Sbjct: 457 LIIGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVIAS 497



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/535 (24%), Positives = 236/535 (44%), Gaps = 45/535 (8%)

Query: 57  NGIFIEA-HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG+F +A  Y   +  +        +   I    R   L+ G I+H   +  G      I
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
              LI  Y+   ++ +AR +F+E+   +   W +L   Y   G+ ++A+ ++H+  + G+
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
             + F + SVL ACG L  +  G  +H ++ K     D  + + L+ MY K   + +A++
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARR 278

Query: 236 VFDEMVEKDIVAMNAMVSGYVQ---------------RGLATEALNLVEEI------GTP 274
           VF +M  KD V  N M+ GY Q                G   + L++   I      G  
Sbjct: 279 VFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDL 338

Query: 275 RV-------------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           +V             + + V  N LI  ++K GD +   ++F   + K    D V+W S+
Sbjct: 339 QVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK----DSVTWNSL 394

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+G   +    E  ++FK M+     P S T   +L   +  A++ +G+ IH   I  G 
Sbjct: 395 INGYTQSGYYKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGF 453

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E +L + ++L+D+YAKCG + +   +F  MS  + ++WN++I    +   C    ++ N+
Sbjct: 454 EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 442 MEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M     + D  +   +L  C  + +   G+ +   +  K            ++++  + G
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIF-KSGFESNVPIGNALIEMYSKCG 572

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK--HLSELEPESAA 553
            L    ++ K M  E D+  W AL+ A   +G  + A  A +   LS + P+S A
Sbjct: 573 SLENCIKVFKYMK-EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVA 626



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 188/417 (45%), Gaps = 43/417 (10%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F+  S+LK      +      +HSL++             LI  Y++      +  VF  
Sbjct: 20  FLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRS 79

Query: 240 MVEKDIVAM-NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS---------- 288
           +   + V + N+++      GL T+AL    E+   +++P+  T+ ++I+          
Sbjct: 80  ISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLEL 139

Query: 289 -----------GFSKS---GDQV--MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVH 327
                      GF      G+ +  M S+   L  A+ V       D VSW S+ISG   
Sbjct: 140 GCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCS 199

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N   ++A D + +    G  P   T+SS+L AC S   ++ G  +HG    +G+ GD+ +
Sbjct: 200 NGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVII 259

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            + L+ MY K   + EAR +F KM+ +++VTWN+MI G A  G  + +++LF  M +   
Sbjct: 260 GNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV 319

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE--HYAC--MVDLLGRAGRLA 503
            D LS T+ + AC   G +++G+ +      KY I    E    AC  ++D+  + G L 
Sbjct: 320 PDMLSITSTIRACGQSGDLQVGKFV-----HKYLIGSGFECDTVACNILIDMYAKCGDLL 374

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS-ELEPESAANNMLLT 559
            A E+  T   + D   W +L+      G  +    + K +  E +P+S    +LL+
Sbjct: 375 AAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLS 430


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 164/503 (32%), Positives = 264/503 (52%), Gaps = 35/503 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H+ +I  G A      + L+  Y +C+ +  A + F  I K N   W A+   YA+
Sbjct: 118 GQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQ 177

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  + A  +   M  +G K +      +L             ++H  ++KH       +
Sbjct: 178 AGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTM 237

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
            ++LI  YSKCGS++ AK++FD     +D+V  N++++ Y+ R     A  L+ ++    
Sbjct: 238 CNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHG 297

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE----------------------- 312
            +P++ ++ ++IS             L  L+  +G E                       
Sbjct: 298 FEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKE 357

Query: 313 ----------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                      D VSW S+++GL     +++A  +F  M S        + S++L +C+ 
Sbjct: 358 ALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSD 417

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A  + G++IH  A+  G+E +  V S+L+ MY+KCG I +AR  F++ S+ +++TWN++
Sbjct: 418 LATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNAL 477

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           +FG A HG C+ A++LF  MEE+K K+DH++F AVLTAC H+GLVE G +    M+  Y 
Sbjct: 478 MFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYG 537

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + PR EHYAC VDL GR+GRL EA  +I+ M  +PD  VW   LGAC++ GNIELA   A
Sbjct: 538 VPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVA 597

Query: 542 KHLSELEPESAANNMLLTDLYAN 564
            HL E+EPE     +LL+++Y N
Sbjct: 598 GHLLEMEPEEHCTYVLLSNMYGN 620



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 219/484 (45%), Gaps = 43/484 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL +  + H+  +  G          ++  Y +C+ +  A +LFDE+P  +   W  + 
Sbjct: 12  RALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMI 71

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +   G  + +  V   M   G + + +   S+LK          G+++HS+++K  + 
Sbjct: 72  AGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYA 131

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL------ 265
            + +  S+L+DMY+KC  +E A   F  + + + V+ NAM++GY Q G    A       
Sbjct: 132 ENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCM 191

Query: 266 -------------------------NLVEEIGTPRVKPNVVTWNT----LISGFSKSGDQ 296
                                    NL  ++    +K  +   NT    LI+ +SK G  
Sbjct: 192 EQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSL 251

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F    + G+  D+V+W S+++  +     D AF    +M   GF P   + +SI
Sbjct: 252 DDAKRIFD--SSAGIR-DLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSI 308

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC--GFISEARTLFDKMSER 414
           + AC +      G+ +HG  I  G E  + + +AL+ MY K   G + EA  +F+ +  +
Sbjct: 309 ISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFK 368

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V+WNS++ G +  G  ++A++ F  M      +DH SF+AVL +C  +   +LGQ++ 
Sbjct: 369 DRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQI- 427

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           +++  KY +       + ++ +  + G + +A    +  S    +  W AL+     HG 
Sbjct: 428 HVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSI-TWNALMFGYAQHGQ 486

Query: 534 IELA 537
             +A
Sbjct: 487 CNVA 490



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 156/339 (46%), Gaps = 9/339 (2%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFY--TECQNIHHARMLFD 137
           +Y+  I     +    +G+ LH  +I  G  +   I+  LI+ Y  ++  ++  A  +F+
Sbjct: 304 SYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFE 363

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
            +   +   W ++    ++ G  ++AV  F  M    +  + +   +VL++C  L+    
Sbjct: 364 SLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQL 423

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G++IH L LK+   ++ FV SSLI MYSKCG +E A++ F+E  +   +  NA++ GY Q
Sbjct: 424 GQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQ 483

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVV 316
            G    AL+L   +   +VK + +T+  +++  S  G      K  + M +  GV P + 
Sbjct: 484 HGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRME 543

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
            +   +     +   +EA    +EM    F P +    + L AC S  N+    ++ G  
Sbjct: 544 HYACAVDLYGRSGRLEEAKALIEEM---PFKPDTTVWKTFLGACRSCGNIELACQVAGHL 600

Query: 377 IVMGVEGDLHVRSALV-DMYAKCGFISEARTLFDKMSER 414
           + M  E + H    L+ +MY       E   +   M ER
Sbjct: 601 LEM--EPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKER 637


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 273/474 (57%), Gaps = 15/474 (3%)

Query: 100 LHAQLIVSGLARLTQ--IATKLITFYTECQNIHHARMLFDE-IPKTNIHRWIALTGAYAR 156
           + AQ+I S +  +    IA K I   +   N+ H+ ++F+  +   NI  + AL  A+++
Sbjct: 43  IQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQ 102

Query: 157 RGYHQEAVTVFHEMHI--QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
                  ++ F+   +       + +   SVLKAC  L+ +  G+K+H  V K+   ++ 
Sbjct: 103 HNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNL 162

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           FV +SL+D+Y K G    A+K+FDEMV +D+V+ N ++SGY   G+  +A  + + +   
Sbjct: 163 FVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGM--- 219

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            ++ N+V+W+T+ISG+++ G+     +LF+ M  +    +VVSW ++I+G   N    +A
Sbjct: 220 -MEKNLVSWSTMISGYARVGNLEEARQLFENMPMR----NVVSWNAMIAGYAQNEKYADA 274

Query: 335 FDTFKEMLSQG-FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
            + F++M  +G   P   T+ S+L ACA    +  GK IH       +E  L + +AL D
Sbjct: 275 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 334

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           MYAKCG + EA+ +F +M ER+ ++W+ +I G A +GY +EA   F +M E+  + + +S
Sbjct: 335 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 394

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  +LTAC H GLV+ G   F+MM + Y I P+ EHY C+VDLL RAGRL +A  +I +M
Sbjct: 395 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM 454

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +P++ VWGALLG C+ + + E  E     + EL+   + + + L ++YA+ G
Sbjct: 455 PMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMG 508


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 258/487 (52%), Gaps = 35/487 (7%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +A   +  +++   I  A+ LF+ I   +   W AL          +EA+ +   M++ G
Sbjct: 338 VANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDG 397

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +  +     +V+ AC ++    TG++IH L +KHS  ++  V SSLID YSK G VE  +
Sbjct: 398 VTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCR 457

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN---------- 284
           KV  ++    IV  N +++G VQ     EA++L +++    +KP+  T++          
Sbjct: 458 KVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLL 517

Query: 285 -----------TLISGFSKSGDQVMVSKLFQLMRAKGVE---------PD---VVSWTSV 321
                      TL SGF      V VS +   ++A+  E         PD   +V WT++
Sbjct: 518 SSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAI 577

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           +SG   N  + ++  +F  M S    P   T +SIL AC+    +  GKEIHG  I  G 
Sbjct: 578 VSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGF 637

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT-WNSMIFGCANHGYCDEAIELFN 440
                  SA++DMY+KCG I  +   F ++  +  +T WNSMI G A +GY DEA+ LF 
Sbjct: 638 GSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQ 697

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M++ + K D ++F  VL AC H GL+  G+  F+ M + Y IMPR +HYAC +DLLGR 
Sbjct: 698 KMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRG 757

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G L EA E+I  +   PD  +W   L AC+ H + E  EIAAK L ELEP++++  +LL+
Sbjct: 758 GHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLS 817

Query: 560 DLYANAG 566
           ++YA AG
Sbjct: 818 NMYAAAG 824



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 224/477 (46%), Gaps = 44/477 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A   G+ +HA  +  GL     + + LI  Y +C  I  A ++FD   + N+  W A+  
Sbjct: 215 AFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLN 274

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              R  Y  EA+ +F  M   GL+ + F   SVL AC HL     G ++  + +K+    
Sbjct: 275 GLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDA 334

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             FV ++ +DM+SK G+++ AK +F+ +  KD V+ NA++ G        EA+++++ + 
Sbjct: 335 SLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMN 394

Query: 273 TPRVKPNVVTWNTLISG-----------------------------------FSKSGDQV 297
              V P+ V++ T+I+                                    +SK GD  
Sbjct: 395 LDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVE 454

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K+   + A  + P  V    +I+GLV N   DEA D F+++L  G  P+S T SSIL
Sbjct: 455 SCRKVLAQVDASSIVPRNV----LIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSIL 510

Query: 358 PACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RN 415
             C    +   GK++H   +  G +  D  V  +LV  Y K     +A  L  +M + +N
Sbjct: 511 SGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKN 570

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V W +++ G A +GY  +++  F +M       D ++F ++L AC  +  +  G+ +  
Sbjct: 571 LVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHG 630

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL-LGACKN 530
           ++ +      +T   A ++D+  + G +  ++E  K + ++ D+ +W ++ LG  KN
Sbjct: 631 LIIKSGFGSYKTATSA-IIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKN 686



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 180/359 (50%), Gaps = 17/359 (4%)

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G++ + F + + L AC  L  + +G++ H    K   G+ AF  ++L++MY++CG V  A
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           ++VF  +   D V   +M+SGY + G   EA+ L   +      P+ VT   ++   +  
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH-NFCNDEAFDTFKEMLSQGFCPTSAT 352
           G       L   M A       V+W +VISG    +    E F  +K+M   G  PT +T
Sbjct: 146 GRLEDARTLLHRMPAP---SSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRST 202

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
            +S+L A A+A     G+++H  A+  G++ ++ V S+L+++YAKCG I +A  +FD   
Sbjct: 203 FASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSG 262

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
           E+N V WN+M+ G   + Y  EAI++F  M+    + D  ++ +VL AC H+    LG++
Sbjct: 263 EKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQ 322

Query: 472 -----LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
                + N M     +   T      +D+  + G + +A  +   + T  D   W ALL
Sbjct: 323 VQCVTIKNCMDASLFVANAT------LDMHSKFGAIDDAKTLFNLI-TYKDTVSWNALL 374



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 182/442 (41%), Gaps = 70/442 (15%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL SGK  H      GL      A  L+  Y  C  +  AR +F  I   +   W ++  
Sbjct: 46  ALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRVFGGISLPDTVCWASMIS 105

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y R G  QEAV +F  M   G   +     +V+ A   L                    
Sbjct: 106 GYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL-------------------- 145

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQR-GLATEALNLVEE 270
                          G +E A+ +   M      VA NA++SGY Q+ G+  E   L ++
Sbjct: 146 ---------------GRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKD 190

Query: 271 IGTPRVKPNVVTWNTLISGFSKS-----GDQVMV--------------SKLFQLMRAKGV 311
           +    + P   T+ +++S  + +     G QV                S L  L    G 
Sbjct: 191 MRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGC 250

Query: 312 ------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                       E +VV W ++++GLV N    EA   F  M   G      T  S+L A
Sbjct: 251 IGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGA 310

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA   +   G+++    I   ++  L V +A +DM++K G I +A+TLF+ ++ ++TV+W
Sbjct: 311 CAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSW 370

Query: 420 NSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N+++ G  ++   +EAI +   M  +    D +SF  V+ AC ++   E G+++ + +  
Sbjct: 371 NALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQI-HCLAM 429

Query: 479 KYKIMPRTEHYACMVDLLGRAG 500
           K+ I       + ++D   + G
Sbjct: 430 KHSICSNHAVGSSLIDFYSKHG 451



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 165/378 (43%), Gaps = 44/378 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RA ++GK +H   +   +     + + LI FY++  ++   R +  ++  ++I     L 
Sbjct: 416 RATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLI 475

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GHLSDIGTGEKIHSLVLKHSF 210
               +     EA+ +F ++   GLK + F   S+L  C G LS I  G+++H   LK  F
Sbjct: 476 AGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSI-IGKQVHCYTLKSGF 534

Query: 211 -GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLV 268
              D  V  SL+  Y K    E A K+  EM + K++V   A+VSGY Q G + ++L   
Sbjct: 535 LNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSF 594

Query: 269 EEIGTPRVKPNVVTWNTLI---------------------SGF--------------SKS 293
             + +  V P+ VT+ +++                     SGF              SK 
Sbjct: 595 WRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKC 654

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD +   + F+ +++K    D+  W S+I G   N   DEA   F++M          T 
Sbjct: 655 GDIISSFEAFKELKSK---QDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTF 711

Query: 354 SSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
             +L ACA A  +  G+      + V G+   +   +  +D+  + G + EA+ + +++ 
Sbjct: 712 LGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELP 771

Query: 413 ER-NTVTWNSMIFGCANH 429
            R + V W + +  C  H
Sbjct: 772 FRPDGVIWATYLAACRMH 789


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 255/472 (54%), Gaps = 46/472 (9%)

Query: 101 HAQLIVSGLARLTQIATKLI---TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           HA ++ SGL   T  A++LI   +  +  Q I +A  +F  IP  N + W  +  AYA  
Sbjct: 27  HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANS 86

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
              + A+T+FH+M    +  + +     LK+CG  S +  G +IH  VLK   G D F+ 
Sbjct: 87  PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQ 146

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++LI +Y+ CG +E A+ + D M+E+D                                 
Sbjct: 147 NTLIHLYASCGCIEDARHLLDRMLERD--------------------------------- 173

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP--DVVSWTSVISGLVHNFCNDEAF 335
             VV+WN L+S +++ G   + S+     R  G  P  +VVSW ++I+G  H     E  
Sbjct: 174 --VVSWNALLSAYAERGLMELASR-----RVFGETPVKNVVSWNAMITGYSHAGRFSEVL 226

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F++M   G  P + T+ S+L ACA    + +G+ +H      G+  D  V +ALVDMY
Sbjct: 227 VLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMY 286

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           +KCG I +A  +F+    ++  TWNS+I G + HG    A+++F++M  E  K + ++F 
Sbjct: 287 SKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFV 346

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL+AC   GL++ G+ +FN+M   + I P  EHY CMVDLLGR G L EA E+++ M  
Sbjct: 347 CVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQ 406

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +    VW +LLGAC+NHGN+ELAE  A+ L EL P+ +++ + L+++YA+ G
Sbjct: 407 KEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMG 458



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 36/313 (11%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ G+ +H  ++ +GL     I   LI  Y  C  I  AR L D + + ++  W AL  
Sbjct: 123 GVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLS 182

Query: 153 AYARRGYHQ--------------------------------EAVTVFHEMHIQGLKQNIF 180
           AYA RG  +                                E + +F +M   G+K +  
Sbjct: 183 AYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNC 242

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
            + SVL AC H+  +  GE +H+ + K+    D FV ++L+DMYSKCGS+EKA +VF+  
Sbjct: 243 TLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSC 302

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
           + KDI   N+++SG    G    AL +  E+     KPN VT+  ++S  S++G      
Sbjct: 303 LRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGR 362

Query: 301 KLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           ++F LM    G++P +  +  ++  L      +EA +  ++M  +     S    S+L A
Sbjct: 363 EMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQK---EASVVWESLLGA 419

Query: 360 CASAANMRRGKEI 372
           C +  N+   + +
Sbjct: 420 CRNHGNVELAERV 432



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +HA +  +G++    +AT L+  Y++C +I  A  +F+   + +I  W ++  
Sbjct: 256 ALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIIS 315

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             +  G  Q A+ +F EM ++G K N      VL AC     +  G ++ +L++ H  G 
Sbjct: 316 GLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMV-HVHGI 374

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDI-VAMNAMVSGYVQRG---LATEALN 266
              +     ++D+  + G +E+A+++  +M +K+  V   +++      G   LA     
Sbjct: 375 QPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQ 434

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
            + E+ +P+   + V  + + +   +  D   V ++ Q MRA+GV  D       + G V
Sbjct: 435 KLLEL-SPQESSSFVQLSNMYASMGRWKD---VMEVRQKMRAQGVRKDPGCSMIEVDGTV 490

Query: 327 HNFCNDEAFDTFKE 340
           + F   E   + K+
Sbjct: 491 YEFLAGEGLVSGKD 504


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/511 (32%), Positives = 264/511 (51%), Gaps = 39/511 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L+ GK ++   +  GL     +AT ++  Y +C  +  AR LF  +   ++  W A  
Sbjct: 313 RDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFL 372

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A    GY +E +++F  M  +GLK +  ++  ++  C  +S+IG G+ +H   +K    
Sbjct: 373 SALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADME 432

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  +V++L+ MY +      A  +F+ M  KDIV  N +++G+ + G    AL +   +
Sbjct: 433 SDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRL 492

Query: 272 GTPRVKPNVVTWNTLISG-----------------------------------FSKSGDQ 296
               + P+  T   L S                                    ++K G  
Sbjct: 493 QLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSL 552

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
             V +LF L +      D VSW  +I+G +HN  ++EA  TF+ M  +   P   T  +I
Sbjct: 553 CSVERLFLLTKHV---KDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTI 609

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPA +  + +R     H C I MG      + ++L+DMYAKCG +  +   F +M  ++T
Sbjct: 610 LPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDT 669

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           ++WN+M+   A HG  + A+ LF+ M+E   ++D +S+ +VL+AC H GL++ G  +F  
Sbjct: 670 ISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFAS 729

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M EK+ + P  EHYACMVDLLG AG   E   ++  M+TEPD  VWGALL ACK H N+ 
Sbjct: 730 MCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKIHSNVT 789

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L E+A  HL +LEP +  ++++L+D+YA  G
Sbjct: 790 LGEVAVHHLLKLEPRNPVHHVVLSDIYAQCG 820



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 215/460 (46%), Gaps = 43/460 (9%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           ++  LI  Y +C ++H A+ +FD +   +   W  +   Y + G + E + + H+M    
Sbjct: 235 VSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGN 294

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +K N   + + L     + D+  G++I++  L+    +D  V + ++ MY+KCG ++KA+
Sbjct: 295 VKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKAR 354

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK-- 292
           ++F  +  +D+VA +A +S  V+ G   E L++ + +    +KP+    + L+SG ++  
Sbjct: 355 ELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEIS 414

Query: 293 -----------------SGDQVMVS----------------KLFQLMRAKGVEPDVVSWT 319
                              D  MV+                 LF  M+ K    D+V W 
Sbjct: 415 NIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIK----DIVVWN 470

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++I+G         A + F  +   G  P S T+  +  ACA   ++  G  +HG     
Sbjct: 471 TLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKS 530

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIEL 438
           G E D+HV+ AL+DMYAKCG +     LF      ++ V+WN MI G  ++GY +EAI  
Sbjct: 531 GFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAIST 590

Query: 439 FNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F +M+ E  + + ++F  +L A  ++ ++      F+    +   +  T     ++D+  
Sbjct: 591 FRRMKLENVRPNLVTFVTILPAVSYLSILREAMA-FHTCIIRMGFLSCTLIGNSLIDMYA 649

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + G+L  + +    M  + D   W A+L A   HG  ELA
Sbjct: 650 KCGQLRYSEKCFHEMENK-DTISWNAMLSAYAMHGQGELA 688



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 213/475 (44%), Gaps = 43/475 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
              G  ++  ++ +GL     I T LI  + +   + +AR +FD++P  +   W A+   
Sbjct: 115 FHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISG 174

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            ++     EA+ +F  M ++G + +   I ++  A   L D+G  + IH  V++ S    
Sbjct: 175 LSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSIC-- 232

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +SLIDMY KCG V  A++VFD M  +D V+   M++GYV+ G   E L L+ ++  
Sbjct: 233 GVVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRR 292

Query: 274 PRVKPN-----------------------------------VVTWNTLISGFSKSGDQVM 298
             VK N                                   +V    ++  ++K G+   
Sbjct: 293 GNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKK 352

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             +LF  +  +    D+V+W++ +S LV      E    F+ M  +G  P  A +S ++ 
Sbjct: 353 ARELFLSLEGR----DLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVS 408

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
            C   +N+  GK +H  AI   +E D+ + + LV MY +    + A TLF++M  ++ V 
Sbjct: 409 GCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVV 468

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I G   +G    A+E+FN+++    L D  +   + +AC  +  ++LG  L   + 
Sbjct: 469 WNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGI- 527

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           EK            ++D+  + G L     +        D   W  ++    ++G
Sbjct: 528 EKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNG 582



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 204/454 (44%), Gaps = 42/454 (9%)

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           F +I   ++  + +   AY++  +  +A+ ++H +   GLK + F    VLKAC    D 
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G  I+  ++ +    D ++ +SLIDM+ K G ++ A+ VFD+M  KD V  NAM+SG 
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGL 175

Query: 256 VQRGLATEALNL----------VEEIGTPRVKPNV-----------------------VT 282
            Q     EAL +          V+++    + P V                       V 
Sbjct: 176 SQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVV 235

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
            N+LI  + K GD     ++F  M   GV  DV SW ++++G V N C  E      +M 
Sbjct: 236 SNSLIDMYCKCGDVHSAQRVFDRM---GVRDDV-SWATMMAGYVKNGCYFEGLQLLHKMR 291

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
                     + + L   A   ++ +GKEI+  A+ MG+  D+ V + +V MYAKCG + 
Sbjct: 292 RGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELK 351

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACC 461
           +AR LF  +  R+ V W++ +      GY  E + +F  M+ E  K D    + +++ C 
Sbjct: 352 KARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCT 411

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
            +  + LG ++ +    K  +         +V +  R      A  +   M  + D+ VW
Sbjct: 412 EISNIGLG-KIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIK-DIVVW 469

Query: 522 GALLGACKNHGNIELA-EIAAK-HLSELEPESAA 553
             L+     +G+  LA E+  +  LS + P+S  
Sbjct: 470 NTLINGFTKYGDPHLALEMFNRLQLSGILPDSGT 503



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 144/320 (45%), Gaps = 18/320 (5%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF-------DEIPKTNIHR 146
           L  G  LH  +  SG      +   L+  Y +C ++     LF       DE+       
Sbjct: 517 LDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVS------ 570

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W  +   Y   GY  EA++ F  M ++ ++ N+    ++L A  +LS +      H+ ++
Sbjct: 571 WNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCII 630

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           +  F +   + +SLIDMY+KCG +  ++K F EM  KD ++ NAM+S Y   G    A+ 
Sbjct: 631 RMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVA 690

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSVISGL 325
           L   +    V+ + V++ +++S    SG       +F  M  K  VEP +  +  ++  L
Sbjct: 691 LFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLL 750

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                 DE      +M ++   P +    ++L AC   +N+  G+      + +     +
Sbjct: 751 GCAGLFDEVLSLLNKMTTE---PDARVWGALLAACKIHSNVTLGEVAVHHLLKLEPRNPV 807

Query: 386 HVRSALVDMYAKCGFISEAR 405
           H    L D+YA+CG  ++AR
Sbjct: 808 H-HVVLSDIYAQCGRWNDAR 826


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 265/510 (51%), Gaps = 42/510 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G  +H  +   G+A    I   L++ Y + + +  AR +F ++   +   W  +  
Sbjct: 237 AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMIC 296

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G H+ +V +F +M I G   ++  I S ++ACG   D+  G+ +H  ++   F  
Sbjct: 297 GYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFEC 355

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    + LIDMY+KCG +  A++VFD    KD V  N++++GY Q G   E L   + + 
Sbjct: 356 DTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMK 415

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
             R KP+ VT+                                   N+L+  ++K G+  
Sbjct: 416 MER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMD 474

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
            + K+F  M A     D++SW +VI+  VH       F    EM ++G  P  AT+  IL
Sbjct: 475 DLLKVFSYMSAH----DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGIL 530

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P C+  A  R+GKEIHG     G E ++ + +AL++MY+KCG +     +F  M E++ V
Sbjct: 531 PMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVV 590

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TW ++I     +G   +A++ F  ME    L D ++F A + AC H G+V+ G R F+ M
Sbjct: 591 TWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRM 650

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +  Y + PR EHYAC+VDLL R+G LA+A E I +M  +PD  +WGALL AC+  GN  +
Sbjct: 651 KTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNI 710

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           A+  +K + EL  +     +L++++YA  G
Sbjct: 711 AQRVSKKILELNSDDTGYYVLVSNIYATLG 740



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 224/462 (48%), Gaps = 35/462 (7%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYAR 156
           + +H+ +I SGL+     + KLI+ Y + ++   +  +F  I P  N++ W ++  A   
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   +A+  + EM  + L+ + F  PSV+ +C  + D+  G  +H   ++  F +D ++
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LIDMYS+   ++ A+ VF+EM  +D V+ N+++SGY   G   +AL++  +     +
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 277 KPNVVTWNT-------------------LISGFSKSGDQV----MVSKLFQLMR------ 307
            P+  T ++                   +I     +GD +    ++S  F+  R      
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARR 278

Query: 308 --AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
             +K    D V+W ++I G      ++ +   F +M+  GF P   +I+S + AC  + +
Sbjct: 279 VFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGD 337

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           ++ GK +H   I  G E D    + L+DMYAKCG +  A+ +FD    +++VTWNS+I G
Sbjct: 338 LQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLING 397

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
               GY  E +E F  M+  +K D ++F  +L+    +  +  G R  +    K+     
Sbjct: 398 YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQG-RGIHCDVIKFGFEAE 456

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
                 ++D+  + G + +  ++   MS   D+  W  ++ +
Sbjct: 457 LIIGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVIAS 497



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/535 (24%), Positives = 236/535 (44%), Gaps = 45/535 (8%)

Query: 57  NGIFIEA-HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG+F +A  Y   +  +        +   I    R   L+ G I+H   +  G      I
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
              LI  Y+   ++ +AR +F+E+   +   W +L   Y   G+ ++A+ ++H+  + G+
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
             + F + SVL ACG L  +  G  +H ++ K     D  + + L+ MY K   + +A++
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARR 278

Query: 236 VFDEMVEKDIVAMNAMVSGYVQ---------------RGLATEALNLVEEI------GTP 274
           VF +M  KD V  N M+ GY Q                G   + L++   I      G  
Sbjct: 279 VFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDL 338

Query: 275 RV-------------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           +V             + + V  N LI  ++K GD +   ++F   + K    D V+W S+
Sbjct: 339 QVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK----DSVTWNSL 394

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+G   +    E  ++FK M+     P S T   +L   +  A++ +G+ IH   I  G 
Sbjct: 395 INGYTQSGYYKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGF 453

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E +L + ++L+D+YAKCG + +   +F  MS  + ++WN++I    +   C    ++ N+
Sbjct: 454 EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 442 MEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M     + D  +   +L  C  + +   G+ +   +  K            ++++  + G
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIF-KSGFESNVPIGNALIEMYSKCG 572

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK--HLSELEPESAA 553
            L    ++ K M  E D+  W AL+ A   +G  + A  A +   LS + P+S A
Sbjct: 573 SLENCIKVFKYMK-EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVA 626



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 188/417 (45%), Gaps = 43/417 (10%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F+  S+LK      +      +HSL++             LI  Y++      +  VF  
Sbjct: 20  FLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRS 79

Query: 240 MVEKDIVAM-NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS---------- 288
           +   + V + N+++      GL T+AL    E+   +++P+  T+ ++I+          
Sbjct: 80  ISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLEL 139

Query: 289 -----------GFSKS---GDQV--MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVH 327
                      GF      G+ +  M S+   L  A+ V       D VSW S+ISG   
Sbjct: 140 GCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCS 199

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N   ++A D + +    G  P   T+SS+L AC S   ++ G  +HG    +G+ GD+ +
Sbjct: 200 NGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVII 259

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            + L+ MY K   + EAR +F KM+ +++VTWN+MI G A  G  + +++LF  M +   
Sbjct: 260 GNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV 319

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYAC--MVDLLGRAGRLA 503
            D LS T+ + AC   G +++G+ +      KY I      +  AC  ++D+  + G L 
Sbjct: 320 PDMLSITSTIRACGQSGDLQVGKFV-----HKYLIGSGFECDTVACNILIDMYAKCGDLL 374

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS-ELEPESAANNMLLT 559
            A E+  T   + D   W +L+      G  +    + K +  E +P+S    +LL+
Sbjct: 375 AAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLS 430


>gi|242077973|ref|XP_002443755.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
 gi|241940105|gb|EES13250.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
          Length = 871

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 165/465 (35%), Positives = 259/465 (55%), Gaps = 10/465 (2%)

Query: 95  QSGKILHAQLIVSGLAR---LTQIAT--KLITFYTECQNIHHARMLFDEIPKT----NIH 145
           QS +   A++++  + R   L  + T   LI+ Y     +  A  + +++ ++    ++ 
Sbjct: 244 QSNEWEEARMLLDDMRREGTLPGVVTWNTLISSYARSGELDVAMEMLEQMEESGVAPDVV 303

Query: 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            W +L   +       EA+  F  M + G++ N   I S + AC  L  +  G ++H   
Sbjct: 304 TWTSLVSGFVHSDRSGEALRCFMRMRLAGVEPNGMTIASAISACASLRLLSQGMELHCHA 363

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K     +    +SL+DMY+KCG +  AK++F+E+ EKDI + N+MV+GY Q G   +A 
Sbjct: 364 IKVGSVNNVLSGNSLVDMYAKCGEIVAAKRIFNEIPEKDIFSWNSMVAGYAQAGYCGKAY 423

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L  ++ +  V+ NV+TWN +ISG+ ++GD     +LFQ+M + GV+ D  SW ++I+G 
Sbjct: 424 ELFCKMESLGVRRNVITWNIMISGYIRNGDDERAFELFQMMESYGVKRDTASWNALIAGS 483

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           VHN  +D A   F++M S    P   TI SI+PA A+     + +EIH C     +E D 
Sbjct: 484 VHNGHSDRALRIFRQMQSLLVRPDYITILSIIPAFANLVAFSKVREIHACIFHNNLEMDG 543

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EE 444
            + +AL++ Y+K G ++ A  +FD+ S RN ++WN +I     HG   EA++ F +M +E
Sbjct: 544 KIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCIILAHLLHGSPCEALDRFCEMKQE 603

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             + DH + TAV+ A    G V   +++F  M   Y I P  +HYA +VDLLGR+G L E
Sbjct: 604 GVRPDHTTLTAVIKAYGLQGKVSEAKQIFYNMTHDYNIHPDLDHYAAIVDLLGRSGSLQE 663

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
           AYE I  M   P+L VW ALL A   HGN  LA +AA+ LS L+P
Sbjct: 664 AYEFIDNMPLIPNLAVWEALLTAASIHGNARLANLAARELSLLDP 708



 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/422 (32%), Positives = 234/422 (55%), Gaps = 9/422 (2%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           TKLIT ++    +  AR +F+ +   ++  W A+ GAYA RG +++ V++   M  +G+ 
Sbjct: 100 TKLITMHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYKDVVSLAVTMVREGVT 159

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF----GTDAFVVSSLIDMYSKCGSVEK 232
            + F+I  +L+AC +  D+  G  +HSL ++  F      D  V +S++ MY KC  + +
Sbjct: 160 PDRFLITRILQACAYTEDLELGVAMHSLAIRSGFMAETARDVPVGNSVLAMYVKCRELGR 219

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A+ VF++M ++D+   N+M+ G  Q     EA  L++++      P VVTWNTLIS +++
Sbjct: 220 ARVVFEKMGQRDLGTWNSMIFGCCQSNEWEEARMLLDDMRREGTLPGVVTWNTLISSYAR 279

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           SG+  +  ++ + M   GV PDVV+WTS++SG VH+  + EA   F  M   G  P   T
Sbjct: 280 SGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHSDRSGEALRCFMRMRLAGVEPNGMT 339

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           I+S + ACAS   + +G E+H  AI +G   ++   ++LVDMYAKCG I  A+ +F+++ 
Sbjct: 340 IASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAKRIFNEIP 399

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
           E++  +WNSM+ G A  GYC +A ELF +ME    + + +++  +++     G  E    
Sbjct: 400 EKDIFSWNSMVAGYAQAGYCGKAYELFCKMESLGVRRNVITWNIMISGYIRNGDDERAFE 459

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLL---GRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           LF MM E Y +   T  +  ++      G + R    +  ++++   PD     +++ A 
Sbjct: 460 LFQMM-ESYGVKRDTASWNALIAGSVHNGHSDRALRIFRQMQSLLVRPDYITILSIIPAF 518

Query: 529 KN 530
            N
Sbjct: 519 AN 520



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 151/380 (39%), Gaps = 80/380 (21%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L  G  LH   I  G          L+  Y +C  I  A+ +F+EIP+ +I  W ++ 
Sbjct: 351 RLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAKRIFNEIPEKDIFSWNSMV 410

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ GY  +A  +F +M   G+++N+                                
Sbjct: 411 AGYAQAGYCGKAYELFCKMESLGVRRNVITW----------------------------- 441

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNL 267
                 + +I  Y + G  E+A ++F  M    V++D  + NA+++G V  G +  AL +
Sbjct: 442 ------NIMISGYIRNGDDERAFELFQMMESYGVKRDTASWNALIAGSVHNGHSDRALRI 495

Query: 268 VEEIGTPRVKPNVVT-----------------------------------WNTLISGFSK 292
             ++ +  V+P+ +T                                    N LI+ +SK
Sbjct: 496 FRQMQSLLVRPDYITILSIIPAFANLVAFSKVREIHACIFHNNLEMDGKIANALINAYSK 555

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           SGD      +F    ++    +++SW  +I   + +    EA D F EM  +G  P   T
Sbjct: 556 SGDLAGACAVFDRHSSR----NIISWNCIILAHLLHGSPCEALDRFCEMKQEGVRPDHTT 611

Query: 353 ISSILPACASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           +++++ A      +   K+I +       +  DL   +A+VD+  + G + EA    D M
Sbjct: 612 LTAVIKAYGLQGKVSEAKQIFYNMTHDYNIHPDLDHYAAIVDLLGRSGSLQEAYEFIDNM 671

Query: 412 SE-RNTVTWNSMIFGCANHG 430
               N   W +++   + HG
Sbjct: 672 PLIPNLAVWEALLTAASIHG 691


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 262/502 (52%), Gaps = 33/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HA ++  G A    +   L+T Y +C ++  AR +FD +   +   W A+   +  
Sbjct: 214 GREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFE 273

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G     + +F  M    ++ N+  I SV  A G LSDI   +++H L +K  F TD   
Sbjct: 274 NGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAF 333

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MY+  G + +A+ VF  M  +D ++  AM+SGY + G   +AL +   +    V
Sbjct: 334 CNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNV 393

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------------------- 311
            P+ +T  + ++  +  G   +  KL +L  +KG                          
Sbjct: 394 SPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIE 453

Query: 312 ------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 E DVVSW+S+I+G   N  N EA   F+ ML+    P S T  + L ACA+   
Sbjct: 454 VFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGA 512

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +R GKEIH   +  G+  + ++ +AL+D+Y KCG    A   F     ++ V+WN MI G
Sbjct: 513 LRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAG 572

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              HG  + A+  FNQM +  +  D ++F A+L AC   G+V  G  LF+ M +KY I+P
Sbjct: 573 FVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVP 632

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HYACMVDLL R G+L EAY  I  M   PD  VWGALL  C+ H ++EL E+AAK++
Sbjct: 633 NLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYV 692

Query: 545 SELEPESAANNMLLTDLYANAG 566
            ELEP  A  ++LL DLYA+AG
Sbjct: 693 LELEPNDAGYHVLLCDLYADAG 714



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 221/462 (47%), Gaps = 47/462 (10%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           ++   +++         HA  +F ++P+ ++  W  + G Y + G  +EA+ ++H M   
Sbjct: 130 RLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWA 189

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G++ +++  P VL++CG + D   G ++H+ VL+  F  +  V+++L+ MY+KCG V  A
Sbjct: 190 GVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAA 249

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN--TLISG-- 289
           +KVFD M   D ++ NAM++G+ + G     L L   +    V+PN++T    T+ SG  
Sbjct: 250 RKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLL 309

Query: 290 ----FSK-----------SGDQVMVSKLFQLMRAKGV------------EPDVVSWTSVI 322
               F+K           + D    + L Q+  + G+              D +SWT++I
Sbjct: 310 SDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMI 369

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           SG   N   D+A + +  M      P   TI+S L ACA   ++  G ++H  A   G  
Sbjct: 370 SGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFM 429

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG-CANHGYCDEAIELFNQ 441
             + V +AL++MYAK   I +A  +F  M E++ V+W+SMI G C NH    EA+  F  
Sbjct: 430 SYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNF-EALYYFRH 488

Query: 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLF------NMMQEKYKIMPRTEHYACMVDL 495
           M    K + ++F A L AC   G +  G+ +        +  E Y  +P       ++DL
Sbjct: 489 MLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGY--LPNA-----LIDL 541

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + G+   A+        + D+  W  ++     HGN E A
Sbjct: 542 YVKCGQTGYAWAQFCAHGAK-DVVSWNIMIAGFVAHGNGETA 582



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 191/404 (47%), Gaps = 58/404 (14%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           L+AC H  D            +H+ FG    + ++++ M  + G    A +VF +M E+D
Sbjct: 114 LRACAHADD------------RHAWFGLR--LGNAMLSMLVRFGETWHAWRVFAKMPERD 159

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT-------------W-------- 283
           + + N MV GY + GL  EAL+L   +    V+P+V T             W        
Sbjct: 160 VFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHA 219

Query: 284 --------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                         N L++ ++K GD V   K+F  M       D +SW ++I+G   N 
Sbjct: 220 HVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVM----DCISWNAMIAGHFENG 275

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             +   + F  ML     P   TI+S+  A    +++   KE+HG A+  G   D+   +
Sbjct: 276 ECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCN 335

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKL 448
           +L+ MYA  G + +ART+F +M  R+ ++W +MI G   +G+ D+A+E++  ME      
Sbjct: 336 SLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSP 395

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++  + L AC  +G +++G +L  + + K   M        ++++  ++ R+ +A E+
Sbjct: 396 DDITIASALAACACLGSLDVGVKLHELAESK-GFMSYVVVTNALLEMYAKSKRIDKAIEV 454

Query: 509 IKTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHLSELEPES 551
            K M  E D+  W +++ G C NH N E        L++++P S
Sbjct: 455 FKCMP-EKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNS 497



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 13/247 (5%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+SGK +HA ++  G+A    +   LI  Y +C    +A   F      ++  W  +   
Sbjct: 513 LRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAG 572

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGT 212
           +   G  + A++ F++M   G   +     ++L AC     +  G E  HS+  K+S   
Sbjct: 573 FVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVP 632

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNLV 268
           +    + ++D+ S+ G + +A    +EM +  D     A+++G   +    L   A   V
Sbjct: 633 NLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYV 692

Query: 269 EEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLV 326
            E+     +PN   ++ L+   ++ +G    ++++ + MR KG++ D   SW  V  G+V
Sbjct: 693 LEL-----EPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEV-KGVV 746

Query: 327 HNFCNDE 333
           H F  D+
Sbjct: 747 HAFLTDD 753


>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
          Length = 569

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 190/547 (34%), Positives = 269/547 (49%), Gaps = 100/547 (18%)

Query: 65  YKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
           Y +P+  R      AA S R+   +   AL  G  LHAQ  V+G         +++  Y+
Sbjct: 12  YTLPLALR------AAASPRVASAVHAHALHLG--LHAQHDVAG---------QILAAYS 54

Query: 125 ECQNIHHARMLFDEIP--KTNIH----------------------------------RWI 148
                  AR +FD +P  +T  H                                   W 
Sbjct: 55  RLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGTRPDAVTWT 114

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG--TGEKIHSL-V 205
           AL  A+AR G H + + +F EM   G + N   +   L AC +  D+    G+ IH   V
Sbjct: 115 ALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGV 174

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K       FV +SLI MY K G ++ AKK F +   K                      
Sbjct: 175 VKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAK---------------------- 212

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSG--DQVMVSKLFQLMRAKG-VEPDVVSWTSVI 322
                        N VTWNTLI+ ++ +G  D+ +   L Q+ +  G V P+VVSW++VI
Sbjct: 213 -------------NTVTWNTLITSYAAAGLCDEAL-DVLAQMEQIGGTVAPNVVSWSAVI 258

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
            G   +   D A + F+ M  Q   P   T++++L AC     +R G+E+HG A  M  E
Sbjct: 259 GGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHA--MKAE 316

Query: 383 GDLH--VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            D H  V + L++MYAKCG +S AR +FD M  R+ ++WNSM+ G   HG CDEA+ LF 
Sbjct: 317 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 376

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
            M     + D ++F AVL+AC H G V  G+RLF+ M   +KI P  EHY CMV LLGRA
Sbjct: 377 DMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRA 436

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G L +A E+++TM   PDL VWGALL +C+ HG+  +AE    ++ + E +S  N+ML+T
Sbjct: 437 GLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLIT 496

Query: 560 DLYANAG 566
           +LYA  G
Sbjct: 497 NLYAMCG 503



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 5/133 (3%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P S T+   L A AS    R    +H  A+ +G+     V   ++  Y++ G  ++AR +
Sbjct: 9   PNSYTLPLALRAAASP---RVASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRV 65

Query: 408 FDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGL 465
           FD M   R T  WN++I   ++    D A + F +M     + D +++TA+L+A    G 
Sbjct: 66  FDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGK 125

Query: 466 VELGQRLFNMMQE 478
                +LF  MQ 
Sbjct: 126 HADVLQLFGEMQR 138


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 179/514 (34%), Positives = 277/514 (53%), Gaps = 50/514 (9%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
             G ILH  LI SG   ++ +   L++ Y +  ++  AR LFDE+ + ++  W  + G Y
Sbjct: 166 HDGLILHGYLIKSGFWAISSVQNSLLSMYVDA-DMECARELFDEMHEKDVIAWSVMIGGY 224

Query: 155 ARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            +    Q  + +F +M  + G++ +  V+ SVLKAC    D+ TG  +H LV+   F  D
Sbjct: 225 LQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCD 284

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV +SLIDMYSKC     A KVF+E+ +++ V+ N+M+SG+V     +EA +L+  +  
Sbjct: 285 LFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRK 344

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
            RV+ + VT                                    + LI  ++K     +
Sbjct: 345 ERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEI 404

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             ++F  MR +    DVVSW+++ISG  H    DEA   ++EM      P   TI ++L 
Sbjct: 405 AWEVFARMRRR----DVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLE 460

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC+  A ++R K  HG AI  G   ++ V +A+VDMY+KCG I  +R  FD+++ +N VT
Sbjct: 461 ACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVT 520

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W++MI     +G   EA+ LF +M+    K + ++  +VL AC H GLVE G  LF  M 
Sbjct: 521 WSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMV 580

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF-----VWGALLGACKNHG 532
           ++  + P  EHY+CMVD+LGRAG+L  A E+IK M   PD       +WG+LL AC+++G
Sbjct: 581 QELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAM---PDNLKNGASIWGSLLSACRSYG 637

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             EL + A   + ELEP ++A  ++ + +YA  G
Sbjct: 638 LTELGKEAISRVLELEPSNSAGYLVASSMYAADG 671



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 179/402 (44%), Gaps = 43/402 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALTGAYA 155
           GK LHA LI  G    T I   ++ FY  C +   A  +F+ + ++ +   W  L   + 
Sbjct: 66  GKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHL 125

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
             G     +  F    + G + NI  +  V++AC  L     G  +H  ++K  F   + 
Sbjct: 126 DNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISS 185

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-IGTP 274
           V +SL+ MY     +E A+++FDEM EKD++A + M+ GY+Q       L +  + +  P
Sbjct: 186 VQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVP 244

Query: 275 RVKPNVVTW-----------------------------------NTLISGFSKSGDQVMV 299
            ++P+ V                                     N+LI  +SK  D    
Sbjct: 245 GIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSA 304

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            K+F  +  +    + VSW S++SG V N    EA      M  +       T+ +IL  
Sbjct: 305 FKVFNEISQR----NNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQI 360

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           C    +    K IH   I  G E +  V SAL+D YAKC  I  A  +F +M  R+ V+W
Sbjct: 361 CKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSW 420

Query: 420 NSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC 460
           ++MI G A+ G  DEAI ++ +M+ +  K + ++   +L AC
Sbjct: 421 STMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEAC 462



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 45/361 (12%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ-NIFVIPSVLKACGHLSDIGT 197
           +  + +  WI      +  G  QE V+ +HE+   G++  ++ V P +LKA   LS    
Sbjct: 7   VSGSKLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSH-RH 65

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYV 256
           G+ +H+ ++K  F +   + +S++  Y +CG  + A  VF+ M   +D V+ N ++ G++
Sbjct: 66  GKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHL 125

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVT-----------------------------W---- 283
             G     L           +PN+ T                             W    
Sbjct: 126 DNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISS 185

Query: 284 --NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
             N+L+S +  + D     +LF  M     E DV++W+ +I G +           F++M
Sbjct: 186 VQNSLLSMYVDA-DMECARELFDEMH----EKDVIAWSVMIGGYLQWEEPQVGLQMFRKM 240

Query: 342 -LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
            L  G  P    + S+L ACAS+ ++  G+ +HG  I  G + DL V ++L+DMY+KC  
Sbjct: 241 VLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKD 300

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTA 459
              A  +F+++S+RN V+WNSM+ G   +    EA  L + M +ER + D ++   +L  
Sbjct: 301 AGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQI 360

Query: 460 C 460
           C
Sbjct: 361 C 361



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 192/430 (44%), Gaps = 49/430 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R + +G+++H  +I  G      +   LI  Y++C++   A  +F+EI + N   W ++ 
Sbjct: 264 RDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSML 323

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +     + EA ++   M  + ++ +   + ++L+ C +       + IH ++++    
Sbjct: 324 SGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSE 383

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  V+S+LID Y+KC  +E A +VF  M  +D+V+ + M+SG+   G   EA+ + +E+
Sbjct: 384 ANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEM 443

Query: 272 GTPRVKPNVVT------------------W-----------------NTLISGFSKSGDQ 296
               VKPNV+T                  W                   ++  +SK G+ 
Sbjct: 444 DRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEI 503

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           +   + F  +  K    ++V+W+++I+    N    EA   F EM   G  P   T  S+
Sbjct: 504 LASRRAFDQLALK----NIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSV 559

Query: 357 LPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-- 413
           L AC+    +  G  +    +  +G+E      S +VDM  + G +  A  +   M +  
Sbjct: 560 LAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNL 619

Query: 414 RNTVT-WNSMIFGCANHGYCD---EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           +N  + W S++  C ++G  +   EAI    ++E      +L  +++  A    GL +  
Sbjct: 620 KNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAA---DGLWDDA 676

Query: 470 QRLFNMMQEK 479
            R+  + +EK
Sbjct: 677 ARIRVLAKEK 686


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 169/517 (32%), Positives = 272/517 (52%), Gaps = 42/517 (8%)

Query: 85  IEIYIRDRALQSGKILHAQLI-VSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN 143
           ++ +   ++ + G+ LHA +I  S L   T + TKL  FY  C  +  A ++FD I   N
Sbjct: 66  LQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKN 125

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
              W  +   YA  G   +++ ++ EM   G + + F  P VLKACG L  +  G ++HS
Sbjct: 126 SFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHS 185

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            V+     +D +V +SL+ MY+K G +  A+ VFD M E+D+ + N M+SGY +   +  
Sbjct: 186 EVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGT 245

Query: 264 ALNLVEEIGTPRVKPNVVTW------------------------------------NTLI 287
           A  + + +G   +  +  T                                     N+LI
Sbjct: 246 AFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLI 305

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
             +      V   +LF+ +R K    D VSW S+I G   N    E+   F+ M   G  
Sbjct: 306 EMYCNCNCMVDARRLFERVRWK----DTVSWNSMILGYARNGDAFESLRLFRRMALDGSG 361

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T  ++L AC   A +R G  IH   +  G + +  V +ALVDMY+KCG ++ +R +
Sbjct: 362 PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRV 421

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLV 466
           FD+M +++ V+W++M+ G   HG   EAI + + M+    + D+  FT++L+AC H GLV
Sbjct: 422 FDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLV 481

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
             G+ +F  M+++Y + P   HY+CMVDLLGRAG L EAY +I+TM  +P   +W ALL 
Sbjct: 482 VEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLT 541

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           A + H NI+LAEI+A+ + ++ P+  ++ + L+++YA
Sbjct: 542 ASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYA 578


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 158/497 (31%), Positives = 282/497 (56%), Gaps = 43/497 (8%)

Query: 73  SFHLSPA-AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHH 131
           +F   P+ A  + +   +  ++L+  +  H++++  GL++ + +ATKLI  Y  CQ+ +H
Sbjct: 17  AFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYH 76

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           +R++FD +   N+  W +L   YA+   + EA  +F++M    +  + F + ++ K    
Sbjct: 77  SRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSE 136

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L  + +G+ IH   ++  F +D  V +S++ MY KCG+ E+++KVFDEM  +        
Sbjct: 137 LGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIR-------- 188

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
                                      N  +WN LI+G++ SG+ V+  ++F  M+ +  
Sbjct: 189 ---------------------------NSGSWNVLIAGYAVSGNLVVGRRVFDRMKCR-- 219

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAANMRRGK 370
             +V SWT++I+G V N  +DEA   F++M +  G  P   ++ S+LPAC+S + +  G+
Sbjct: 220 --NVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGR 277

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANH 429
           +IHG A+   +  ++ + +AL+DMY+KCG +  AR +F+  S  ++ ++W+SMI G   H
Sbjct: 278 QIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLH 337

Query: 430 GYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G   EAI L+++M +   + D ++   +L+AC   GLV  G  +++ +   Y I P  E 
Sbjct: 338 GKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEI 397

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           +AC+VD+LGRAG+L  A + IK M  EP   VWGAL+     HG++E+ E+A + L +LE
Sbjct: 398 FACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLE 457

Query: 549 PESAANNMLLTDLYANA 565
           PE+ +N + +++LYA++
Sbjct: 458 PENPSNYVSISNLYASS 474


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 175/501 (34%), Positives = 260/501 (51%), Gaps = 33/501 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HA ++  G      +   L+T Y +C ++  AR +FD +   +   W A+   +  
Sbjct: 208 GREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFE 267

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G     + +F  M    ++ N+  I SV  A G LSD+   +++H L +K  F  D   
Sbjct: 268 NGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAF 327

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MY+  G + +A+ VF  M  +D +   AM+SGY + G   +AL +   +    V
Sbjct: 328 CNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNV 387

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------------------- 311
            P+ +T  + ++  +  G   +  KL +L  +KG                          
Sbjct: 388 SPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIE 447

Query: 312 ------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 E DVVSW+S+I+G   N  N EA   F+ ML+    P S T  + L ACA+   
Sbjct: 448 VFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGA 506

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +R GKEIH   +  G+E + ++ +AL+D+Y KCG    A   F     ++ V+WN MI G
Sbjct: 507 LRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAG 566

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              HG+ D A+  FNQM +  +  D ++F A+L AC   G+V  G  LF+ M EKY I+P
Sbjct: 567 FVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVP 626

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HYACMVDLL RAG+L EAY  I  M   PD  VWGALL  C+ H ++EL E+AAK++
Sbjct: 627 NLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYV 686

Query: 545 SELEPESAANNMLLTDLYANA 565
             LEP  A  ++LL DLYA+A
Sbjct: 687 LALEPNDAGYHVLLCDLYADA 707



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 188/372 (50%), Gaps = 33/372 (8%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           ++   +++         HA  +F ++P+ ++  W  + G Y + G   EA+ ++H M   
Sbjct: 124 RLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWA 183

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G++ +++  P VL++CG + D   G ++H+ VL+  FG +  V+++L+ MY+KCG V  A
Sbjct: 184 GVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAA 243

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN--TLISG-- 289
           +KVFD M   D ++ NAM++G+ + G     L L   +    V+PN++T    T+ SG  
Sbjct: 244 RKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLL 303

Query: 290 ----FSK-----------SGDQVMVSKLFQLMRAKGV------------EPDVVSWTSVI 322
               F+K           +GD    + L Q+  + G+              D ++WT++I
Sbjct: 304 SDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMI 363

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           SG   N   D+A + +  M      P   TI+S L ACA   ++  G ++H  A   G  
Sbjct: 364 SGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFI 423

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG-CANHGYCDEAIELFNQ 441
             + V +A+++MYAK   I +A  +F  M E++ V+W+SMI G C NH    EA+  F  
Sbjct: 424 SYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNF-EALYYFRH 482

Query: 442 MEERKKLDHLSF 453
           M    K + ++F
Sbjct: 483 MLADVKPNSVTF 494



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 193/404 (47%), Gaps = 58/404 (14%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           L+AC H  D            +H+ FG    + ++++ M  + G    A +VF +M E+D
Sbjct: 108 LRACAHADD------------RHAWFGLR--LGNAMLSMLVRFGETWHAWRVFAKMPERD 153

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT-------------W-------- 283
           + + N MV GY + GL  EAL+L   +    V+P+V T             W        
Sbjct: 154 VFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHA 213

Query: 284 --------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                         N L++ ++K GD +   K+F  M       D +SW ++I+G   N 
Sbjct: 214 HVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVM----DCISWNAMIAGHFENG 269

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             +   + F  ML     P   TI+S+  A    +++   KE+HG A+  G  GD+   +
Sbjct: 270 ECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCN 329

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKL 448
           +L+ MYA  G + +ART+F +M  R+ +TW +MI G   +G+ D+A+E++  ME      
Sbjct: 330 SLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSP 389

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++  + L AC  +G +++G +L  + + K  I       A ++++  ++ R+ +A E+
Sbjct: 390 DDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNA-ILEMYAKSKRIDKAIEV 448

Query: 509 IKTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHLSELEPES 551
            K M  E D+  W +++ G C NH N E        L++++P S
Sbjct: 449 FKCMH-EKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNS 491



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 23/252 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+SGK +HA ++  G+     +   LI  Y +C    +A   F      ++  W  +   
Sbjct: 507 LRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAG 566

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGT 212
           +   G+   A++ F++M   G   +     ++L AC     +  G E  HS+  K+S   
Sbjct: 567 FVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVP 626

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-----YVQRG-LATEAL 265
           +    + ++D+ S+ G + +A    +EM +  D     A+++G     +V+ G LA + +
Sbjct: 627 NLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYV 686

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL---MRAKGVEPDV-VSWTSV 321
             +E        PN   ++ L+       D  +  KL ++   MR KG++ D   SW  V
Sbjct: 687 LALE--------PNDAGYHVLLCDL--YADACLWDKLARVRKTMREKGLDHDSGCSWVEV 736

Query: 322 ISGLVHNFCNDE 333
             G+VH F  D+
Sbjct: 737 -KGVVHAFLTDD 747


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 171/547 (31%), Positives = 280/547 (51%), Gaps = 64/547 (11%)

Query: 83   ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ-NIHHARMLFDEIPK 141
            +R  + +++  +++ K LHA L+VSGL       +K+I  Y   Q ++  A  +F +I  
Sbjct: 843  QRKIVKLQEAVMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIES 902

Query: 142  TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
                 W  L    A+    ++A+  + +   +G+K +    P VLKAC        GE++
Sbjct: 903  PTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQM 962

Query: 202  HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
            H+ V+K  F  D FV +SLI +Y+ CG++  A+ VF+EM+ KD+V+ N+++ GY Q    
Sbjct: 963  HNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRL 1022

Query: 262  TEALNLVEEIGTPRVKPNVVT-------------W----------------------NTL 286
             E L L + +    V+ + VT             W                      NTL
Sbjct: 1023 KEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTL 1082

Query: 287  ISGFSKSGDQVMVSKLFQLMRAKGV---------------------------EPDVVSWT 319
            I  + + G      K+F  M+ K                               D++SW+
Sbjct: 1083 IDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWS 1142

Query: 320  SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
            S+I          ++ + F++M      P +  I+S+L ACA    +  GK IH      
Sbjct: 1143 SMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRN 1202

Query: 380  GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
             ++ D  + ++L+DM+AKCG + EA  +F  M E++T++WNS+I G AN+G+ DEA+++F
Sbjct: 1203 NIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIF 1262

Query: 440  NQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
            + M  E  + + ++F  VL AC +  LVE G   F  M+  + + P+ +HY C+VD+L R
Sbjct: 1263 HSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSR 1322

Query: 499  AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
            AG+L +A   I  M   PD  VW  LLGAC+ HGN+ +AE+A K LSEL+P ++A++MLL
Sbjct: 1323 AGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLL 1382

Query: 559  TDLYANA 565
            +++YA+A
Sbjct: 1383 SNIYASA 1389



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 225/437 (51%), Gaps = 46/437 (10%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  +FD+ P      W A   AY+   +  EA+ +F     Q L  + FV   VLKAC  
Sbjct: 437 ALKVFDQSPAP----WRAFLKAYSHGPFPLEALHLFKHAR-QHLADDTFVFTFVLKACAG 491

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L     G ++H+LV++  F   A+V ++LI++Y     + +A+KVFDEM  K        
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVK-------- 543

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
                                      NVV+WN +I+GF+  G+      LF  M  +  
Sbjct: 544 ---------------------------NVVSWNVMITGFAGWGEVEYARLLFDQMPCR-- 574

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
             +VVSWT +I G        EA    + M++ G  P+  T+ +++PA ++   +  G+ 
Sbjct: 575 --NVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEM 632

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSMIFGCANHG 430
           ++G     G+  D  V ++L+D+YAK G +  +  +FD+M   RN V+W S+I G A HG
Sbjct: 633 LNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHG 692

Query: 431 YCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
              EA+ELF +M     K + ++F +V+ AC H GLVE G   F  M  +Y I P  +H+
Sbjct: 693 LSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHF 752

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
            C++D+LGRAGRL EA ++I+ +  E ++ VW  LLG C  +G + + E A K +S+LE 
Sbjct: 753 GCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLER 812

Query: 550 ESAANNMLLTDLYANAG 566
           ES  +  +L+++    G
Sbjct: 813 ESGGDFAVLSNVLTELG 829



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           ++ + F      ++  I +Y+  R L   + +  ++ V  +         +IT +     
Sbjct: 505 VVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNV----MITGFAGWGE 560

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           + +AR+LFD++P  N+  W  L   Y R   + EA+T+   M   G+  +   + +V+ A
Sbjct: 561 VEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPA 620

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVA 247
             +L  I  GE ++    K    +DA V +SLID+Y+K GSV+ + KVFDEM++ +++V+
Sbjct: 621 ISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVS 680

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
             +++SG+   GL+ EAL L  E+    +KPN +T+ ++I+  S  G
Sbjct: 681 WTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGG 727


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 173/511 (33%), Positives = 267/511 (52%), Gaps = 46/511 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA- 155
           G+ +H  +    L     ++T L+ FY +C  +  A+ +FD++ K ++  W ++   ++ 
Sbjct: 138 GREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSL 197

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
             G + E   +  +M    +  N   I  VL A   ++ +  G++IH   ++  F  D  
Sbjct: 198 HEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVV 256

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEI--- 271
           V + ++D+Y KC  ++ A+++FD M + K+ V  +AMV  YV      EAL L  ++   
Sbjct: 257 VGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLML 316

Query: 272 -------------GTPRVKPNV----------------------VTWNTLISGFSKSGDQ 296
                           RV  N+                      +  NTL+S ++K G  
Sbjct: 317 KDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGII 376

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               + F  M  +    D VS+T++ISG V N  ++E    F EM   G  P  AT++S+
Sbjct: 377 NGAMRFFNEMDLR----DAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASV 432

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPACA  A +  G   H  AI+ G   D  + +AL+DMYAKCG I  AR +FD+M +R  
Sbjct: 433 LPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGI 492

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN+MI     HG   EA+ LF+ M+ E  K D ++F  +++AC H GLV  G+  FN 
Sbjct: 493 VSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNA 552

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M + + I+PR EHYACMVDLL RAG   E +  I+ M  EPD+ VWGALL AC+ + N+E
Sbjct: 553 MTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVE 612

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L E  +K + +L PES  N +LL+++Y+  G
Sbjct: 613 LGEGVSKKIQKLGPESTGNFVLLSNMYSAVG 643



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/500 (26%), Positives = 239/500 (47%), Gaps = 61/500 (12%)

Query: 85  IEIYIRDRALQSGKILHAQLIV-------SGLARLTQIATKLITFYTECQNIHHARMLFD 137
           +E  I+ ++L  GK++H  L+        + L        KL+  Y  C  +  AR +FD
Sbjct: 16  LESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFD 75

Query: 138 EIP--KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           ++P    N+  W  L  AYA  G ++EA+ ++++M   G+  N F  P VLKAC  L + 
Sbjct: 76  KMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEA 135

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G +IH  + +    ++ +V ++L+D Y+KCG ++ AK+VFD+M ++D+VA N+M+SG+
Sbjct: 136 SEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGF 195

Query: 256 -VQRGLATEALNLVEEIG---TPR------VKPNVVTWNTL-----ISGFSKS----GDQ 296
            +  G   E   L+ ++    +P       V P V   N+L     I GF       GD 
Sbjct: 196 SLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDV 255

Query: 297 VM----------------VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           V+                  ++F +M   G+  + V+W++++   V      EA + F +
Sbjct: 256 VVGTGILDVYGKCQCIDYARRIFDMM---GIVKNEVTWSAMVGAYVVCDFMREALELFCQ 312

Query: 341 ML---SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           +L         ++ T+++++  CA+  ++  G  +H  AI  G   DL V + L+ MYAK
Sbjct: 313 LLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAK 372

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAV 456
           CG I+ A   F++M  R+ V++ ++I G   +G  +E + +F +M+      +  +  +V
Sbjct: 373 CGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASV 432

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIM----PRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           L AC H+  +  G          Y I+      T     ++D+  + G++  A ++   M
Sbjct: 433 LPACAHLAGLHYGS-----CSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRM 487

Query: 513 STEPDLFVWGALLGACKNHG 532
                +  W  ++ A   HG
Sbjct: 488 HKR-GIVSWNTMIIAYGIHG 506



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 4/298 (1%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LS    +  I +      L +G  LH   I SG      +   L++ Y +C  I+ A   
Sbjct: 323 LSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRF 382

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           F+E+   +   + A+   Y + G  +E + +F EM + G+      + SVL AC HL+ +
Sbjct: 383 FNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGL 442

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G   H   +   F  D  + ++LIDMY+KCG ++ A+KVFD M ++ IV+ N M+  Y
Sbjct: 443 HYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAY 502

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPD 314
              G+  EAL L + + +  +KP+ VT+  LIS  S SG        F  M    G+ P 
Sbjct: 503 GIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPR 562

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           +  +  ++  L       E     ++M  +   P      ++L AC    N+  G+ +
Sbjct: 563 MEHYACMVDLLSRAGLFKEVHSFIEKMPLE---PDVRVWGALLSACRVYKNVELGEGV 617



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 13/244 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  G   H   I+ G    T I   LI  Y +C  I  AR +FD + K  I  W  +  
Sbjct: 441 GLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMII 500

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY   G   EA+ +F  M  +GLK +      ++ AC H   +  G+   +  +   FG 
Sbjct: 501 AYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFN-AMTQDFGI 559

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALN 266
              +   + ++D+ S+ G  ++     ++M +E D+    A++S    Y    L      
Sbjct: 560 IPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSK 619

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
            ++++G P    N V  + + S   +  D   V +  Q  + +G E     SW   ISG+
Sbjct: 620 KIQKLG-PESTGNFVLLSNMYSAVGRWDDAAQV-RFTQ--KEQGFEKSPGCSWIE-ISGV 674

Query: 326 VHNF 329
           VH F
Sbjct: 675 VHTF 678


>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
          Length = 824

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 265/479 (55%), Gaps = 4/479 (0%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R ++ GK  HA  IV+GL     + T ++ FY +   I +A M+FD + + ++  W  L 
Sbjct: 280 RGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLLI 339

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y  +G  + A+ +   M ++ LK +   + +++ A     ++  G+++    ++HSF 
Sbjct: 340 SGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFE 399

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  + S+ +DMY+KCGSV  AKKVFD  V+KD++  N +++ Y + GL+ EAL L  E+
Sbjct: 400 SDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEM 459

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
               V PNV+TWN +I    ++G      ++F  M++ G  P+++SWT++++GLV N C+
Sbjct: 460 QLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGTFPNMISWTTMMNGLVQNGCS 519

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSA 390
           +EA    ++M   G  P   +I+  L AC + A++  G+ IHG  I          + ++
Sbjct: 520 EEAILFLRKMQESGMRPNVFSITVALSACVNLASLHFGRSIHGYIIRNQQHSSSASIETS 579

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK--KL 448
           LVDMYAKCG I++A  +F          +N+MI   A +G   EA+ L+  +EE    K 
Sbjct: 580 LVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAVALYRSLEEDVGIKP 639

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D+++ T VL+AC H G +     +F  M  K+ + P  EHY  MVDLL  AG   +A  +
Sbjct: 640 DNITITNVLSACNHAGDINQAIEIFTDMVSKHGMKPCLEHYGLMVDLLASAGETEKALSL 699

Query: 509 IKTMSTEPDLFVWGALLGACKNHGN-IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I+ M  +PD  +  +L+ +CK   +  EL +  +  L E EPE++ N + +++ YA  G
Sbjct: 700 IEEMPYKPDARMIQSLVASCKKQQHKSELMDYLSSQLLESEPENSGNYVRVSNAYAVEG 758



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 153/534 (28%), Positives = 263/534 (49%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  + E ++  +  R L++G+ +HA+++ +G   AR   I TKL+ FY +C  +
Sbjct: 56  RNLRIGPEIFGEILQGCVYXRDLRTGQQIHARILKNGDFYARNEYIETKLVIFYAKCDAL 115

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A +LF ++   N+  W A+ G   R G  + A+  F EM   G+  + FV+P+V KAC
Sbjct: 116 EVAEVLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKAC 175

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V K       FV SSL DMY KCG ++ A+KVFDE+ E+++VA N
Sbjct: 176 GALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWN 235

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK----------------S 293
           A++ GYVQ G+  EA+ L+ ++    V+P  VT +T +S  +                 +
Sbjct: 236 ALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIEEGKQSHAIAIVN 295

Query: 294 G---DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           G   D ++ + +             +++  + +E DVV+W  +ISG VH    + A    
Sbjct: 296 GLELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLLISGYVHQGLVENAIYMC 355

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++ A A   N++ GKE+    I    E D+ + S  VDMYAKC
Sbjct: 356 QLMRLENLKFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTAVDMYAKC 415

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G + +A+ +FD   +++ + WN+++   A  G   EA+ LF +M+ E    + +++  ++
Sbjct: 416 GSVVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLII 475

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS---T 514
            +    G V   + +F  MQ      P    +  M++ L + G   EA   ++ M     
Sbjct: 476 LSLLRNGQVNEAKEMFLQMQSS-GTFPNMISWTTMMNGLVQNGCSEEAILFLRKMQESGM 534

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
            P++F     L AC N  ++        ++  ++    SA+    L D+YA  G
Sbjct: 535 RPNVFSITVALSACVNLASLHFGRSIHGYIIRNQQHSSSASIETSLVDMYAKCG 588



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 219/444 (49%), Gaps = 47/444 (10%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G  +EA+++  EM  + L+    +   +L+ C +  D+ TG++IH+ +LK+   +  +
Sbjct: 39  KNGEIREALSLVTEMDFRNLRIGPEIFGEILQGCVYXRDLRTGQQIHARILKNGDFYARN 98

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVE 269
            ++ + L+  Y+KC ++E A+ +F ++  +++ +  A++    + GL   AL     ++E
Sbjct: 99  EYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLE 158

Query: 270 EIGTPR--VKPNV------VTWNTLISG----FSKSG--DQVMVSKLFQLMRAK-GV--- 311
               P   V PNV      + W+    G     +K+G  D V V+     M  K GV   
Sbjct: 159 NGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLDD 218

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E +VV+W +++ G V N  N+EA     +M  +G  PT  T+S+ L A A+
Sbjct: 219 ARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASAN 278

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H  AIV G+E D  + +++++ Y K G I  A  +FD+M E++ VTWN +
Sbjct: 279 MRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLL 338

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G  + G  + AI +   M  E  K D ++ + +++A      ++LG+ +     + Y 
Sbjct: 339 ISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNLKLGKEV-----QCYC 393

Query: 482 IMPRTEHYACM----VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           I    E    +    VD+  + G + +A ++  + + + DL +W  LL A    G   L+
Sbjct: 394 IRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDS-TVQKDLILWNTLLAAYAESG---LS 449

Query: 538 EIAAKHLSELEPESAANNMLLTDL 561
             A +   E++ ES   N++  +L
Sbjct: 450 GEALRLFYEMQLESVPPNVITWNL 473



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 109/486 (22%), Positives = 221/486 (45%), Gaps = 72/486 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  +  +GL     +A+ L   Y +C  +  AR +FDEIP+ N+  W AL   Y +
Sbjct: 184 GRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQ 243

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  +M  +G++     + + L A  ++  I  G++ H++ + +    D  +
Sbjct: 244 NGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIEEGKQSHAIAIVNGLELDNIL 303

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S+++ Y K G ++ A+ +FD M+EKD+V  N ++SGYV +GL   A+ + + +    +
Sbjct: 304 GTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENL 363

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           K + VT +TL+S  +++     G +V                     M +K   ++ AK 
Sbjct: 364 KFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKK 423

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                V+ D++ W ++++    +  + EA   F EM  +   P   T + I+ +      
Sbjct: 424 VFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSL----- 478

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER----NTVTWNS 421
           +R G+                              ++EA+ +F +M       N ++W +
Sbjct: 479 LRNGQ------------------------------VNEAKEMFLQMQSSGTFPNMISWTT 508

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+ G   +G  +EAI    +M+E   + +  S T  L+AC ++  +  G+ +   +    
Sbjct: 509 MMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVALSACVNLASLHFGRSIHGYIIRNQ 568

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           +          +VD+  + G + +A E +       +L ++ A++ A   +GN++ A   
Sbjct: 569 QHSSSASIETSLVDMYAKCGDINKA-ERVFGSKLYSELPLYNAMISAYALYGNVKEAVAL 627

Query: 541 AKHLSE 546
            + L E
Sbjct: 628 YRSLEE 633



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 14/244 (5%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P   S+   +S L  N    EA     EM  +           IL  C    ++R G++I
Sbjct: 25  PSSTSYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIFGEILQGCVYXRDLRTGQQI 84

Query: 373 HGCAIVMGVEGDLHVR-----SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           H   +     GD + R     + LV  YAKC  +  A  LF K+  RN  +W ++I    
Sbjct: 85  HARILK---NGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKC 141

Query: 428 NHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
             G  + A+  F +M E     D+     V  AC  +     G+ +   +  K  +    
Sbjct: 142 RIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVA-KAGLHDCV 200

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
              + + D+ G+ G L +A ++   +  E ++  W AL+     +G   + E A + LS+
Sbjct: 201 FVASSLADMYGKCGVLDDARKVFDEI-PERNVVAWNALMVGYVQNG---MNEEAIRLLSD 256

Query: 547 LEPE 550
           +  E
Sbjct: 257 MRKE 260


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 179/509 (35%), Positives = 275/509 (54%), Gaps = 54/509 (10%)

Query: 68  PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
           P  + SF L   ++S  +++  +  +L   K +HAQ++  GLA+ T +   LI  Y  C+
Sbjct: 44  PSGTSSFSL--PSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCR 101

Query: 128 NIHHARMLFDE---IPKTNIHRWIALTGAYARRGYHQEAVTVFHEM--HIQGLKQNIFVI 182
           N+  AR++FD+   +P T I  W  +  AY++    QE++ +FH+M  H +    + +  
Sbjct: 102 NLSFARIVFDQFPSLPPTII--WNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTF 159

Query: 183 PSVLKACG-HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
             V  AC  H +  G GE +H +V+K  + +D FV +SL++MYS    +  AK+VFDEM 
Sbjct: 160 TFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           ++D                                   V+TW +++ G++  G+ V   +
Sbjct: 220 QRD-----------------------------------VITWTSVVKGYAMRGELVRARE 244

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLV-HNFCNDEAFDTFKEMLSQG-FCPTSATISSILPA 359
           LF +M  +    + VSW  +++G V H F N EA   F +ML      P  A + SIL A
Sbjct: 245 LFDMMPGR----NDVSWAVMVAGYVGHRFYN-EALQCFNDMLCHDEVKPNEAVLVSILSA 299

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA    + +GK IH       +    ++ +AL+DMYAKCG I  AR +FD + +R+ +TW
Sbjct: 300 CAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTW 359

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            SMI G + HG   E +  F++M  E  K D ++   VL  C H GLVE G  +F+ M  
Sbjct: 360 TSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIP 419

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + I+P+ EHY C++DLLGRAGRL  A+E IK+M  EPD+  W ALL AC+ HG+++L E
Sbjct: 420 LWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGE 479

Query: 539 IAAKHLSELEPES-AANNMLLTDLYANAG 566
               H++EL P S     +LL++LYA+ G
Sbjct: 480 RIINHIAELCPGSHGGGYVLLSNLYASMG 508



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 9/304 (2%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG-L 175
           T ++  Y     +  AR LFD +P  N   W  +   Y    ++ EA+  F++M     +
Sbjct: 227 TSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEV 286

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
           K N  V+ S+L AC HL  +  G+ IH  + K+     + + ++LIDMY+KCG ++ A++
Sbjct: 287 KPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARR 346

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG- 294
           VFD + ++D++   +M+SG    GL  E L    E+     KP+ +T   +++G S SG 
Sbjct: 347 VFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGL 406

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
            +  +S    ++   G+ P +  +  +I  L      + AF+  K M  +   P      
Sbjct: 407 VEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPME---PDVVAWR 463

Query: 355 SILPACASAANMRRGKEI--HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           ++L AC    ++  G+ I  H   +  G  G  +V   L ++YA  G       +   MS
Sbjct: 464 ALLSACRIHGDVDLGERIINHIAELCPGSHGGGYV--LLSNLYASMGQWESVTKVRKAMS 521

Query: 413 ERNT 416
           +R +
Sbjct: 522 QRGS 525


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 164/488 (33%), Positives = 261/488 (53%), Gaps = 41/488 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + T LI  Y+ C N+  AR +FD I   ++  W  +   YA    H++++ +F +M I G
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG 200

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
            + N F I + LK+C  L     G+ +H   LK  +  D +V  +L+++Y+K G + +A+
Sbjct: 201 YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQ 260

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----------------------------- 265
           + F+EM + D++  + M+S Y Q   + EAL                             
Sbjct: 261 QFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL 320

Query: 266 ---NLVEEIGTPRVK----PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
              NL  +I +  +K     NV   N L+  ++K G+     KLF        E + V+W
Sbjct: 321 VLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLF----TGSTEKNEVAW 376

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
            ++I G V     ++A + F  ML     PT  T SS+L A AS   +  G++IH   I 
Sbjct: 377 NTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIK 436

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
                D  V ++L+DMYAKCG I +AR  FDKM +++ V+WN++I G + HG   EA+ L
Sbjct: 437 TMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNL 496

Query: 439 FNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F+ M++   K + L+F  VL+AC + GL++ G+  F  M + Y I P  EHY CMV LLG
Sbjct: 497 FDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLG 556

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           R+G+  EA ++I  +  +P + VW ALLGAC  H N++L ++ A+ + E+EP+  A ++L
Sbjct: 557 RSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVL 616

Query: 558 LTDLYANA 565
           L+++YA A
Sbjct: 617 LSNMYATA 624



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 233/494 (47%), Gaps = 51/494 (10%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           +Y+  ++  IR+R   +GK LH  ++  G +        L+  Y     +  A  LFDE+
Sbjct: 5   SYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEM 64

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P TN   ++ L   ++R    Q A  +   +  +G + N FV  ++LK    +    T  
Sbjct: 65  PLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCL 124

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
            +H+ V K     DAFV ++LID YS CG+V+ A++VFD +  KD+V+   MV+ Y +  
Sbjct: 125 SVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENY 184

Query: 260 LATEALNLVEEIGTPRVKPNVVTWN----------------------------------- 284
              ++L L  ++     +PN  T +                                   
Sbjct: 185 CHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGI 244

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LS 343
            L+  ++KSG+     + F+ M     + D++ W+ +IS    +  + EA + F  M  S
Sbjct: 245 ALLELYTKSGEIAEAQQFFEEMP----KDDLIPWSLMISRYAQSDKSKEALELFCRMRQS 300

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
               P + T +S+L ACAS   +  G +IH C + +G++ ++ V +AL+D+YAKCG I  
Sbjct: 301 SVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIEN 360

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCH 462
           +  LF   +E+N V WN++I G    G  ++A+ LF N +    +   +++++VL A   
Sbjct: 361 SVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASAS 420

Query: 463 VGLVELGQRLFNM----MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           +  +E G+++ ++    M  K  ++  +     ++D+  + GR+ +A      M  + D 
Sbjct: 421 LVALEPGRQIHSLTIKTMYNKDSVVANS-----LIDMYAKCGRIDDARLTFDKMDKQ-DE 474

Query: 519 FVWGALLGACKNHG 532
             W AL+     HG
Sbjct: 475 VSWNALICGYSIHG 488



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 173/377 (45%), Gaps = 36/377 (9%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
            A + GK +H   +     R   +   L+  YT+   I  A+  F+E+PK ++  W  + 
Sbjct: 219 EAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMI 278

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             YA+    +EA+ +F  M    +   N F   SVL+AC  L  +  G +IHS VLK   
Sbjct: 279 SRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL 338

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++ FV ++L+D+Y+KCG +E + K+F    EK+ VA N ++ GYVQ G   +ALNL   
Sbjct: 339 DSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSN 398

Query: 271 IGTPRVKPNVVTWNTLISGFSK-------------------SGDQVMVSKLF-------- 303
           +    ++P  VT+++++   +                    + D V+ + L         
Sbjct: 399 MLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGR 458

Query: 304 ----QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
               +L   K  + D VSW ++I G   +    EA + F  M      P   T   +L A
Sbjct: 459 IDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSA 518

Query: 360 CASAANMRRGKEIHGCAIVM--GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           C++A  + +G+  H  +++   G+E  +   + +V +  + G   EA  L  ++  + +V
Sbjct: 519 CSNAGLLDKGRA-HFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSV 577

Query: 418 -TWNSMIFGCANHGYCD 433
             W +++  C  H   D
Sbjct: 578 MVWRALLGACVIHKNLD 594



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 4/278 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  +H+ ++  GL     ++  L+  Y +C  I ++  LF    + N   W  +   
Sbjct: 323 LNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVG 382

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G  ++A+ +F  M    ++       SVL+A   L  +  G +IHSL +K  +  D
Sbjct: 383 YVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKD 442

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           + V +SLIDMY+KCG ++ A+  FD+M ++D V+ NA++ GY   GL  EALNL + +  
Sbjct: 443 SVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQ 502

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-LMRAKGVEPDVVSWTSVISGLVHNFCND 332
              KPN +T+  ++S  S +G        F+ +++  G+EP +  +T ++  L  +   D
Sbjct: 503 SNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFD 562

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           EA     E+    F P+     ++L AC    N+  GK
Sbjct: 563 EAVKLIGEI---PFQPSVMVWRALLGACVIHKNLDLGK 597


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 265/502 (52%), Gaps = 32/502 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H  +I         + T L+T Y +  ++  A+ +FD++    +    A+  A
Sbjct: 260 LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 319

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +   G   +A+ ++++M       + F I S+L  C  +     G  +H+ V+K S  ++
Sbjct: 320 FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 379

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + S+L+ MY KCGS E A  VF  M E+D+VA  +M++G+ Q     +AL+L   +  
Sbjct: 380 VAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK 439

Query: 274 PRVKPNV---------------VTWNTLISGFS-KSG---DQVMVSKLFQLMRAKGV--- 311
             VK +                V    LI GF+ K G   D  +   L  +    G    
Sbjct: 440 EGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAES 499

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                      ++V+W S+IS    N   + + +   ++L  GF   S +I+++L A +S
Sbjct: 500 AEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSS 559

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A + +GK +H   I + +  DL V +AL+DMY KCG +  A+ +F+ M  RN VTWNSM
Sbjct: 560 VAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSM 619

Query: 423 IFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G  +HG C+EA+ LF +M+  +   D ++F A++T+C H G+VE G  LF +M+ +Y 
Sbjct: 620 IAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYG 679

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + PR EHYA +VDLLGRAGRL +AY  I+ M  + D  VW  LL AC+ H N+EL E+ A
Sbjct: 680 VEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVA 739

Query: 542 KHLSELEPESAANNMLLTDLYA 563
            +L ++EP   +N + L +LY 
Sbjct: 740 DNLLKMEPARGSNYVPLLNLYG 761



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 149/548 (27%), Positives = 249/548 (45%), Gaps = 64/548 (11%)

Query: 54  PLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQ---SGKILHAQLIVSGLA 110
           P+I+G F   H++                E +  + R + L    +G+ +H  +I +   
Sbjct: 131 PVIDGYFKYGHFE----------------EGLAQFCRMQELSWYMAGRQIHGYIIRNMFE 174

Query: 111 RLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTGAYARRGYHQEAVTVFHE 169
               + T LI  Y+ C     A  LF ++  ++NI  W  + G +   G  ++++ ++  
Sbjct: 175 GDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSL 234

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
              +  K           AC H   +  G ++H  V+K +F  D +V +SL+ MY+K GS
Sbjct: 235 AKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGS 294

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG---TP------------ 274
           VE AKKVFD++++K++   NAM+S ++  G A +AL L  ++    TP            
Sbjct: 295 VEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSG 354

Query: 275 --------------------RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
                                ++ NV   + L++ + K G       +F  M+    E D
Sbjct: 355 CSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK----ERD 410

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           VV+W S+I+G   N    +A D F+ M  +G    S  ++S++ A     N+  G  IHG
Sbjct: 411 VVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHG 470

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
            AI  G+E D+ V  +LVDMY+K GF   A  +F  M  +N V WNSMI   + +G  + 
Sbjct: 471 FAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEM 530

Query: 435 AIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           +I L  Q ++    LD +S T VL A   V  +  G+ L +  Q + +I    +    ++
Sbjct: 531 SINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTL-HAYQIRLQIPSDLQVENALI 589

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPES 551
           D+  + G L  A  + + M    +L  W +++    +HGN E A    K +  SE  P+ 
Sbjct: 590 DMYVKCGCLKYAQLIFENMPRR-NLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDE 648

Query: 552 AANNMLLT 559
                L+T
Sbjct: 649 VTFLALIT 656



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 223/489 (45%), Gaps = 73/489 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-----NIHRWI 148
           L  G+ +HA ++  GL     IAT LI  Y +C  +  A  +FD++ ++     +I  W 
Sbjct: 71  LYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWN 130

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            +   Y + G+ +E +  F  M                     LS    G +IH  ++++
Sbjct: 131 PVIDGYFKYGHFEEGLAQFCRMQ-------------------ELSWYMAGRQIHGYIIRN 171

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNL 267
            F  D ++ ++LI MYS C    +A  +F ++  + +IVA N M+ G+V+ G+  ++L L
Sbjct: 172 MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLEL 231

Query: 268 ---------------------------VEEIGTPRVKPNVVTWN---------TLISGFS 291
                                      V + G  +V  +V+  N         +L++ ++
Sbjct: 232 YSLAKNENCKLVSASFTGAFTACSHGEVLDFGR-QVHCDVIKMNFQDDPYVCTSLLTMYA 290

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           KSG      K+F  +  K VE       ++IS  + N    +A   + +M +      S 
Sbjct: 291 KSGSVEDAKKVFDQVLDKEVELR----NAMISAFIGNGRAYDALGLYNKMKAGETPVDSF 346

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           TISS+L  C+   +   G+ +H   I   ++ ++ ++SAL+ MY KCG   +A ++F  M
Sbjct: 347 TISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTM 406

Query: 412 SERNTVTWNSMIFG-CANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELG 469
            ER+ V W SMI G C N  + D A++LF  ME E  K D    T+V++A   +  VELG
Sbjct: 407 KERDVVAWGSMIAGFCQNRRFKD-ALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELG 465

Query: 470 QRLFNMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
             +     ++   +      AC +VD+  + G  AE+ EM+ +     +L  W +++   
Sbjct: 466 HLIHGFAIKRG--LESDVFVACSLVDMYSKFG-FAESAEMVFSSMPNKNLVAWNSMISCY 522

Query: 529 KNHGNIELA 537
             +G  E++
Sbjct: 523 SWNGLPEMS 531



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 189/410 (46%), Gaps = 44/410 (10%)

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A  ++G + +A+ +  +     L    F  PS+LK C  LS++  G  IH+ ++     +
Sbjct: 29  ALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQS 88

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-----DIVAMNAMVSGYVQRGLATEAL-- 265
           D ++ +SLI+MY KCG +  A +VFD+M E      DI   N ++ GY + G   E L  
Sbjct: 89  DPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQ 148

Query: 266 ----------------------NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
                                 N+ E  G P ++        LI  +S     +    LF
Sbjct: 149 FCRMQELSWYMAGRQIHGYIIRNMFE--GDPYLE------TALIGMYSSCSRPMEAWSLF 200

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             +  +    ++V+W  +I G V N   +++ + +    ++     SA+ +    AC+  
Sbjct: 201 GKLENRS---NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHG 257

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
             +  G+++H   I M  + D +V ++L+ MYAK G + +A+ +FD++ ++     N+MI
Sbjct: 258 EVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMI 317

Query: 424 FGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
                +G   +A+ L+N+M+     +D  + +++L+ C  VG  + G R  +    K  +
Sbjct: 318 SAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG-RTVHAEVIKRSM 376

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNH 531
                  + ++ +  + G   +A  +  TM  E D+  WG+++ G C+N 
Sbjct: 377 QSNVAIQSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFCQNR 425



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 27/242 (11%)

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           +S+ F  +R   V P +    S I  LV      +A +   +           T  S+L 
Sbjct: 7   ISRKFYSLRQTEVSPSI---NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLK 63

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER---- 414
            CAS +N+  G+ IH   + MG++ D ++ ++L++MY KCG +  A  +FDKMSE     
Sbjct: 64  TCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSA 123

Query: 415 -NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
            +   WN +I G   +G+ +E +  F +M+E      LS+          G    G  + 
Sbjct: 124 PDITVWNPVIDGYFKYGHFEEGLAQFCRMQE------LSWYM-------AGRQIHGYIIR 170

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           NM +      P  E    ++ +     R  EA+ +   +    ++  W  ++G    +G 
Sbjct: 171 NMFEGD----PYLE--TALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGM 224

Query: 534 IE 535
            E
Sbjct: 225 WE 226



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           I+   F+L   + +  +       AL  GK LHA  I   +    Q+   LI  Y +C  
Sbjct: 538 ILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGC 597

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           + +A+++F+ +P+ N+  W ++   Y   G  +EAV +F EM       +     +++ +
Sbjct: 598 LKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITS 657

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEKA 233
           C H   +  G  +  L ++  +G +  +   +S++D+  + G ++ A
Sbjct: 658 CSHSGMVEEGLNLFQL-MRIEYGVEPRMEHYASVVDLLGRAGRLDDA 703


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 171/553 (30%), Positives = 285/553 (51%), Gaps = 47/553 (8%)

Query: 57  NGIFIEA-HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG + EA  Y   ++        A +   I +    + L+ G++LHA ++ + L     I
Sbjct: 36  NGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDII 95

Query: 116 -ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM---H 171
             T LIT Y  C+++  AR  FDE+ K  +  W AL   Y+R G H+ A+ ++ +M    
Sbjct: 96  LGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKS 155

Query: 172 IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
            +G+K +     S L AC  + DI  G +I +  +   + +D+ V ++LI+MYSKCGS+E
Sbjct: 156 PEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLE 215

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW-------- 283
            A+KVFD +  +D++A N M+SGY ++G AT+AL L + +G    KPNVVT+        
Sbjct: 216 SARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACT 275

Query: 284 ---------------------------NTLISGFSKSGDQVMVSK-LFQLMRAKGVEPDV 315
                                      N L++ ++K    +  ++ +F+ MR +    DV
Sbjct: 276 NLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR----DV 331

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           ++W  +I   V      +A D FK+M  +   P   T+S++L ACA     R+GK +H  
Sbjct: 332 ITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHAL 391

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
                 + D+ + ++L++MY +CG + +   +F  + +++ V+W+++I   A HG+    
Sbjct: 392 IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTG 451

Query: 436 IELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
           +E F ++ +E    D ++  + L+AC H G+++ G + F  M   + + P   H+ CMVD
Sbjct: 452 LEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVD 511

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554
           LL RAGRL  A  +I  M   PD   W +LL  CK H + + A   A  L ELE E   +
Sbjct: 512 LLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHS 571

Query: 555 NM-LLTDLYANAG 566
            + LL+++YA AG
Sbjct: 572 TVTLLSNVYAEAG 584



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 224/476 (47%), Gaps = 56/476 (11%)

Query: 122 FYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            Y +C ++  A  +F  I   N   W  +  A+AR G+++EA+  +  M ++GL+ +  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
               +  C    D+  G+ +H+++L+      D  + ++LI MY++C  +E A+K FDEM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEI--GTPR-VKPNVVTW-------------- 283
            +K +V  NA+++GY + G    AL + +++   +P  +KP+ +T+              
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 284 ---------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
                                N LI+ +SK G      K+F  ++ +    DV++W ++I
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR----DVIAWNTMI 236

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           SG        +A + F+ M      P   T   +L AC +  ++ +G+ IH      G E
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYE 296

Query: 383 GDLHVRSALVDMYAKC-GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
            DL + + L++MY KC   + EAR +F++M  R+ +TWN +I     +G   +A+++F Q
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQ 356

Query: 442 ME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE---KYKIMPRTEHYACMVDLLG 497
           M+ E    + ++ + VL+AC  +G    G+ +  ++     K  ++        ++++  
Sbjct: 357 MQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENS----LMNMYN 412

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           R G L +   +   +  +  L  W  L+ A   HG+   +    +H  EL  E  A
Sbjct: 413 RCGSLDDTVGVFAAIR-DKSLVSWSTLIAAYAQHGH---SRTGLEHFWELLQEGLA 464



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 168/373 (45%), Gaps = 48/373 (12%)

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--- 279
           MY KCGSV  A  VF  +   + V+   +V+ + + G   EAL     +    ++P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 280 ---------------------------------VVTWNTLISGFSKSGDQVMVSKLFQLM 306
                                            ++    LI+ +++  D  +  K F  M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS---QGFCPTSATISSILPACASA 363
             K     +V+W ++I+G   N  +  A   +++M+S   +G  P + T SS L AC   
Sbjct: 121 GKK----TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVV 176

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            ++ +G+EI    +  G   D  V++AL++MY+KCG +  AR +FD++  R+ + WN+MI
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G A  G   +A+ELF +M     K + ++F  +LTAC ++  +E G+ +   ++E    
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYE 296

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
                    +      +  L EA ++ + M T  D+  W  L+ A   +G    A+ A  
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYGQ---AKDALD 352

Query: 543 HLSELEPESAANN 555
              +++ E+ A N
Sbjct: 353 IFKQMQLENVAPN 365



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 148/325 (45%), Gaps = 5/325 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALTG 152
           L+ G+ +H ++   G      I   L+  YT+C + +  AR +F+ +   ++  W  L  
Sbjct: 280 LEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIV 339

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY + G  ++A+ +F +M ++ +  N   + +VL AC  L     G+ +H+L+       
Sbjct: 340 AYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKA 399

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + +SL++MY++CGS++    VF  + +K +V+ + +++ Y Q G +   L    E+ 
Sbjct: 400 DVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELL 459

Query: 273 TPRVKPNVVTWNTLISGFSKSGD-QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
              +  + VT  + +S  S  G  +  V     ++   G+ PD   +  ++  L      
Sbjct: 460 QEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRL 519

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           + A +   +M    F P +   +S+L  C    + +R   +      +  E +    + L
Sbjct: 520 EAAENLIHDM---PFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLL 576

Query: 392 VDMYAKCGFISEARTLFDKMSERNT 416
            ++YA+ G   + R   ++ + R  
Sbjct: 577 SNVYAEAGRWDDVRKTRNRRAARKN 601


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 171/510 (33%), Positives = 273/510 (53%), Gaps = 43/510 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFY--TECQNIHHARMLFDEIPKTNIHRWIAL 150
           ++   K  HA L+ + L      ++KLI+F   +   ++++AR LF ++   +      +
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              YAR     EAV++++ M  +G+  + +  P VL AC  L  +  G + H  VLK+ F
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           G+D FV+++LI  Y  CGS   A  VFDE   +D+V  N M++ ++ +GL+ +A +L++E
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 271 IGT-PRVKPNVVTW-----------------------------------NTLISGFSKSG 294
           +     ++P+ VT                                    N ++  + K  
Sbjct: 203 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCD 262

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           D     ++F  +R    E DV+SWTS++SGL  +    EA   F++M          T+ 
Sbjct: 263 DIESAQEVFNRIR----EKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLV 318

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
            +L ACA    + +GK IH       +  DL + +ALVDMYAKCG I  A  +F +M  R
Sbjct: 319 GVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 378

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           N  TWN++I G A HG+ ++AI LF+QME  K + D ++F A+L AC H GLV+ G  +F
Sbjct: 379 NVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMF 438

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M+ K++I PR EHY C+VDLL RA ++ +A   I+ M  + +  +W  LLGAC++ G+
Sbjct: 439 QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGH 498

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYA 563
            +LAE   + + ELEP+S    ++L++LYA
Sbjct: 499 FDLAEKIGRRVIELEPDSCGRYVMLSNLYA 528


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 168/524 (32%), Positives = 269/524 (51%), Gaps = 41/524 (7%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           A S  I+  I   ++  G+++HAQ+I  G +  T + T L+  Y +   I  +  +F+ +
Sbjct: 166 ALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSL 225

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
              N   W A+   +   G + EA   F  M  + ++ N+    SV KA G L D+  G 
Sbjct: 226 ENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGR 285

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM--NAMVSGYVQ 257
            I+ +  +    ++  V ++LIDM++KCG V ++  VF        V +  NAM+SG+  
Sbjct: 286 YINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTI 345

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTW---------------------------------- 283
            G   EA+ L   +    +K +V T+                                  
Sbjct: 346 SGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLC 405

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           N L+  ++K G+   + KLF        E + +SWT++++    +   ++A   F +M  
Sbjct: 406 NALMDAYAKCGELDAMRKLFDTWE----ESNQISWTTLVTAYSQSSEWEDALSVFSQMRE 461

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
            GF P   T S +L +CAS  ++  G+++H      G   D  V S L+DMYAKCG + +
Sbjct: 462 MGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRD 521

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCH 462
           A  +F+ + + + ++W +MI G A HG   +A+ELF +ME      +  +F  +L AC H
Sbjct: 522 AIKVFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSH 581

Query: 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
            GLV+ G R F++M+E+Y ++P  EHYAC+VD+LGR GRL EA++ I  M  EPD  VW 
Sbjct: 582 GGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWS 641

Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            LLGAC+ HGNI+LA+IAA+ +    P+  A  +LL++ Y  AG
Sbjct: 642 TLLGACRVHGNIQLAKIAAQKVLSYNPDDFAALVLLSNTYREAG 685



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 227/478 (47%), Gaps = 39/478 (8%)

Query: 91  DRALQSGKILHAQLIVSGLAR--LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R L+  K +H  +I   L    LT +  +L+  Y++C +   AR +FDEIP+ ++  W 
Sbjct: 74  ERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWT 133

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            L       G++++ +  F E+    +  + + + + ++AC  +  I  GE +H+ V+  
Sbjct: 134 VLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITR 193

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
            F +  FV +SL+ MY+K G +  + KVF+ +  ++ V+ NAM+SG+V  GL  EA N  
Sbjct: 194 GFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSF 253

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV------------- 315
             +    ++PNV  + ++     + GD      + ++    G++ ++             
Sbjct: 254 LRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKC 313

Query: 316 --------------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                               + W ++ISG   +   +EA   F  M          T  S
Sbjct: 314 GCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCS 373

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
            L + A   ++   K++HG     G  G + + +AL+D YAKCG +   R LFD   E N
Sbjct: 374 TLNSIADMRSLEYVKQLHGMIWKSGSIG-VSLCNALMDAYAKCGELDAMRKLFDTWEESN 432

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            ++W +++   +     ++A+ +F+QM E   + + ++F+ VL +C  +  +E GQ++ +
Sbjct: 433 QISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHS 492

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +  +      +    + ++D+  + G + +A ++ +++  +PD+  W A++     HG
Sbjct: 493 LTCKTGFARDKCVE-SVLIDMYAKCGSVRDAIKVFESLK-DPDVISWTAMISGYAQHG 548



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 115/256 (44%), Gaps = 15/256 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ G+ +H+    +G AR   + + LI  Y +C ++  A  +F+ +   ++  W A+  
Sbjct: 483 SLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMIS 542

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            YA+ G  ++A+ +F +M +     N      +L AC H   +  G +  H +  ++   
Sbjct: 543 GYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLV 602

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM-----VSGYVQRGLATEAL 265
            +    + ++D+  + G + +A K   +M +E D    + +     V G +Q  LA  A 
Sbjct: 603 PEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQ--LAKIAA 660

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISG 324
             V           V+  NT    + ++G+      +  +M+++ +  +  +SW   I G
Sbjct: 661 QKVLSYNPDDFAALVLLSNT----YREAGNIEGGLNVRNMMKSQAMRKETGMSWI-CIGG 715

Query: 325 LVHNFCNDEAFDTFKE 340
            +H FC+ + +   K+
Sbjct: 716 KIHKFCSGDQYHPQKD 731


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 269/501 (53%), Gaps = 47/501 (9%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
           F L+  +++  +     ++A ++G+ +HA +  S       I T L+  Y +C+    A+
Sbjct: 143 FVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQ 202

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
            +FD +P+ NI  W +L   Y + G   EA+ +F  M   G   +   + SV+ AC  L+
Sbjct: 203 KVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLA 262

Query: 194 DIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
               G ++H+ ++K   F  D  + ++L+DMY+KCG   +AK VFD M  + +V+  +M+
Sbjct: 263 AGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMI 322

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
           +GY +     +A  +  ++    V+ NVV WN LI+ ++ + ++                
Sbjct: 323 TGYAKSANVGDAQAVFLQM----VEKNVVAWNVLIATYAHNSEE---------------- 362

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
                              +EA   F  +  +   PT  T  ++L ACA+ AN++ G++ 
Sbjct: 363 -------------------EEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQA 403

Query: 373 H------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           H      G     G E D+ V ++LVDMY K G IS+   +F++M+ R+ V+WN+MI G 
Sbjct: 404 HVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGY 463

Query: 427 ANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
           A +G   +A+ LF +M    ++ D ++   VL+AC H GLV+ G+R F  M E + I+P 
Sbjct: 464 AQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPT 523

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
            +HY CM+DLLGRAG L E  E+I+ M  EPD  +W +LLGAC+ H NI++ E AA  L 
Sbjct: 524 RDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLF 583

Query: 546 ELEPESAANNMLLTDLYANAG 566
           EL+P+++   +LL+++YA  G
Sbjct: 584 ELDPDNSGPYVLLSNMYAELG 604



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 40/297 (13%)

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F  + F++++L+  Y++ GS+  A++VFD M  ++  + NA++S   + G A +AL L  
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            I                                        +PD  S+ +V++ L  + 
Sbjct: 106 AI---------------------------------------PDPDQCSYNAVVAALAQHG 126

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
              +A      M +  F   + + +S L ACAS    R G+++H          D+++ +
Sbjct: 127 RGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGT 186

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL- 448
           ALVDMYAKC    EA+ +FD M ERN V+WNS+I     +G  DEA+ LF +M +   + 
Sbjct: 187 ALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVP 246

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
           D ++  +V++AC  +     G+++   M +  +          +VD+  + GR  EA
Sbjct: 247 DEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEA 303


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 164/506 (32%), Positives = 264/506 (52%), Gaps = 40/506 (7%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            L  G+ +H  +I         + T L+T Y +  ++  A+ +FD++    +    A+  A
Sbjct: 665  LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 724

Query: 154  YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            +   G   +A+ ++++M       + F I S+L  C  +     G  +H+ V+K S  ++
Sbjct: 725  FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 784

Query: 214  AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
              + S+L+ MY KCGS E A  VF  M E+D+VA  +M++G+ Q     +AL+L   +  
Sbjct: 785  VAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEK 844

Query: 274  PRVKPNVVTWNTLISG-----------------------------------FSKSGDQVM 298
              VK +     ++IS                                    +SK G    
Sbjct: 845  EGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAES 904

Query: 299  VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
               +F  M  K    ++V+W S+IS    N   + + +   ++L  GF   S +I+++L 
Sbjct: 905  AEMVFSSMPNK----NLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLV 960

Query: 359  ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
            A +S A + +GK +H   I + +  DL V +AL+DMY KCG +  A+ +F+ M  RN VT
Sbjct: 961  AVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVT 1020

Query: 419  WNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
            WNSMI G  +HG C+EA+ LF +M+  +   D ++F A++T+C H G+VE G  LF +M+
Sbjct: 1021 WNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMR 1080

Query: 478  EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             +Y + PR EHYA +VDLLGRAGRL +AY  I+ M  + D  VW  LL AC+ H N+EL 
Sbjct: 1081 IEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELG 1140

Query: 538  EIAAKHLSELEPESAANNMLLTDLYA 563
            E+ A +L ++EP   +N + L +LY 
Sbjct: 1141 ELVADNLLKMEPARGSNYVPLLNLYG 1166



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 152/551 (27%), Positives = 254/551 (46%), Gaps = 51/551 (9%)

Query: 54   PLINGIFIEAHYKMPIIS----RSFHLSPAAYSERIEIYIRDRA--LQSGKILHAQLIVS 107
            P+I+G F   H++  +      +   + P  YS  I + I +R     +G+ +H  +I +
Sbjct: 517  PVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRN 576

Query: 108  GLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTGAYARRGYHQEAVTV 166
                   + T LI  Y+ C     A  LF ++  ++NI  W  + G +   G  ++++ +
Sbjct: 577  MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLEL 636

Query: 167  FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
            +     +  K           AC H   +  G ++H  V+K +F  D +V +SL+ MY+K
Sbjct: 637  YSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAK 696

Query: 227  CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG---TP--------- 274
             GSVE AKKVFD++++K++   NAM+S ++  G A +AL L  ++    TP         
Sbjct: 697  SGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSL 756

Query: 275  -----------------------RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
                                    ++ NV   + L++ + K G       +F  M+    
Sbjct: 757  LSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK---- 812

Query: 312  EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
            E DVV+W S+I+G   N    +A D F+ M  +G    S  ++S++ A     N+  G  
Sbjct: 813  ERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHL 872

Query: 372  IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
            IHG AI  G+E D+ V  +LVDMY+K GF   A  +F  M  +N V WNSMI   + +G 
Sbjct: 873  IHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGL 932

Query: 432  CDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             + +I L  Q+ +    LD +S T VL A   V  +  G+ L +  Q + +I    +   
Sbjct: 933  PEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTL-HAYQIRLQIPSDLQVEN 991

Query: 491  CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL--SELE 548
             ++D+  + G L  A  + + M    +L  W +++    +HGN E A    K +  SE  
Sbjct: 992  ALIDMYVKCGCLKYAQLIFENMPRR-NLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETA 1050

Query: 549  PESAANNMLLT 559
            P+      L+T
Sbjct: 1051 PDEVTFLALIT 1061



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 232/489 (47%), Gaps = 54/489 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-----NIHRWI 148
           L  G+ +HA ++  GL     IAT LI  Y +C  +  A  +FD++ ++     +I  W 
Sbjct: 457 LYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWN 516

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            +   Y + G+ +E +  F  M   G++ + + +  VL  C  LS    G +IH  ++++
Sbjct: 517 PVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRN 576

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNL 267
            F  D ++ ++LI MYS C    +A  +F ++  + +IVA N M+ G+V+ G+  ++L L
Sbjct: 577 MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLEL 636

Query: 268 ---------------------------VEEIGTPRVKPNVVTWN---------TLISGFS 291
                                      V + G  +V  +V+  N         +L++ ++
Sbjct: 637 YSLAKNENCKLVSASFTGAFTACSHGEVLDFGR-QVHCDVIKMNFQDDPYVCTSLLTMYA 695

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           KSG      K+F  +  K VE       ++IS  + N    +A   + +M +      S 
Sbjct: 696 KSGSVEDAKKVFDQVLDKEVELR----NAMISAFIGNGRAYDALGLYNKMKAGETPVDSF 751

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           TISS+L  C+   +   G+ +H   I   ++ ++ ++SAL+ MY KCG   +A ++F  M
Sbjct: 752 TISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTM 811

Query: 412 SERNTVTWNSMIFG-CANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELG 469
            ER+ V W SMI G C N  + D A++LF  ME E  K D    T+V++A   +  VELG
Sbjct: 812 KERDVVAWGSMIAGFCQNRRFKD-ALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELG 870

Query: 470 QRLFNMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
             +     ++   +      AC +VD+  + G  AE+ EM+ +     +L  W +++   
Sbjct: 871 HLIHGFAIKRG--LESDVFVACSLVDMYSKFG-FAESAEMVFSSMPNKNLVAWNSMISCY 927

Query: 529 KNHGNIELA 537
             +G  E++
Sbjct: 928 SWNGLPEMS 936



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 73/349 (20%)

Query: 132 ARMLFDEI-PKTNIHRWIALT-----GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           AR++ +E+ PK  +   + L       A  ++G + +A+ +  +     L    F  PS+
Sbjct: 388 ARIIDNELTPKKAVLELMNLPQVEEIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSL 447

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           LK C  LS++  G  IH+ ++     +D ++ +SLI+M                      
Sbjct: 448 LKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINM---------------------- 485

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
                    YV+ GL   AL + +++                   S+S D          
Sbjct: 486 ---------YVKCGLLGSALQVFDKM-------------------SESRDSA-------- 509

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                  PD+  W  VI G       +E    F  M   G  P   ++S +L  C   + 
Sbjct: 510 -------PDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSW 562

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNSMIF 424
              G++IHG  I    EGD ++ +AL+ MY+ C    EA +LF K+  R N V WN MI 
Sbjct: 563 YMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIG 622

Query: 425 GCANHGYCDEAIELFN-QMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           G   +G  ++++EL++    E  KL   SFT   TAC H  +++ G+++
Sbjct: 623 GFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQV 671



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I  LV      +A +   +           T  S+L  CAS +N+  G+ IH   + MG+
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSER-----NTVTWNSMIFGCANHGYCDEAI 436
           + D ++ ++L++MY KCG +  A  +FDKMSE      +   WN +I G   +G+ +E +
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 437 ELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKIMPRTEHYACMVD 494
             F +M+E   + D  S + VL  C  +     G+++   +++  ++  P  E    ++ 
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLE--TALIG 590

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           +     R  EA+ +   +    ++  W  ++G    +G  E
Sbjct: 591 MYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWE 631



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 69   IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
            I+   F+L   + +  +       AL  GK LHA  I   +    Q+   LI  Y +C  
Sbjct: 943  ILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGC 1002

Query: 129  IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
            + +A+++F+ +P+ N+  W ++   Y   G  +EAV +F EM       +     +++ +
Sbjct: 1003 LKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITS 1062

Query: 189  CGHLSDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEKA 233
            C H   +  G  +  L ++  +G +  +   +S++D+  + G ++ A
Sbjct: 1063 CSHSGMVEEGLNLFQL-MRIEYGVEPRMEHYASVVDLLGRAGRLDDA 1108


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 175/576 (30%), Positives = 272/576 (47%), Gaps = 103/576 (17%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L   +  HA+++ S +A  T +   L++ Y     +  AR +FDEIP  N   + AL  A
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 154 YAR---------------------------------RGYHQEAVTVFHEMHIQGLKQNIF 180
           YAR                                 RG+  +A+     MH      N +
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAY 152

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
              S L AC    D  TGE++H LV +     D  + S+L+DMY+KC   E A++VFD M
Sbjct: 153 SFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEE------------------------------ 270
            E+++V+ N++++ Y Q G   EAL L  E                              
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGR 272

Query: 271 ------IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------- 311
                 +   R++ ++V  N L+  ++K G       +F  M ++ +             
Sbjct: 273 QVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKS 332

Query: 312 --------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
                         E +V++W  +I+    N   +EA   F ++      PT  T  ++L
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 392

Query: 358 PACASAANMRRGKEIH------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
            AC + A+++ G++ H      G     G E D+ V ++LVDMY K G I +   +F++M
Sbjct: 393 NACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM 452

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQ 470
           + R+ V+WN+MI G A +G   +A+ LF +M    +  D ++   VL+AC H GLV+ G+
Sbjct: 453 AARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGR 512

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
           R F+ M E + I P  +HY CMVDLLGRAG L EA E+I  M  EPD  +W +LLGAC+ 
Sbjct: 513 RYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRL 572

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           H N+EL E  A  L EL+P+++   +LL+++YA  G
Sbjct: 573 HKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMG 608



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 174/381 (45%), Gaps = 39/381 (10%)

Query: 167 FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
            H  H Q L  ++     +        ++      H+ +LK     + F++++L+  Y++
Sbjct: 5   LHHHHGQELVAHLRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYAR 64

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
            G +  A++VFDE+  ++  + NA++S Y + G   EA  L E I      P+  ++N +
Sbjct: 65  LGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAI----PDPDQCSYNAV 120

Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           ++  ++ G              +G   D + + +                    M +  F
Sbjct: 121 VAALARHG--------------RGHAADALRFLAA-------------------MHADDF 147

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
              + + +S L ACA+  + R G+++HG         D+H+RSALVDMYAKC    +AR 
Sbjct: 148 VLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARR 207

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +FD M ERN V+WNS+I     +G   EA+ LF +M       D ++ ++V++AC  +  
Sbjct: 208 VFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAA 267

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
              G+++   M +  ++         +VD+  + GR  EA  +  +M +   +     L 
Sbjct: 268 DREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILT 327

Query: 526 GACKNHGNIELAEIAAKHLSE 546
           G  K+  N+E A++    + E
Sbjct: 328 GYAKS-ANVEDAQVVFSQMVE 347



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 12/332 (3%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           D   + G+   A+ I   +   + ++ T ++T Y +  N+  A+++F ++ + N+  W  
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNV 355

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L  AYA+ G  +EA+ +F ++    +    +   +VL ACG+++D+  G++ H  VLK  
Sbjct: 356 LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEG 415

Query: 210 F------GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
           F       +D FV +SL+DMY K GS++   KVF+ M  +D V+ NAM+ GY Q G A +
Sbjct: 416 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKD 475

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVI 322
           AL+L E +      P+ VT   ++S    SG      + F  M    G+ P    +T ++
Sbjct: 476 ALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMV 535

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
             L       EA +   +M  +   P S   +S+L AC    N+  G+   G    +  +
Sbjct: 536 DLLGRAGHLKEAEELINDMPME---PDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQ 592

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
                   L +MYA+ G  +E   +   M +R
Sbjct: 593 NS-GPYVLLSNMYAEMGKWAEVFRVRRSMKDR 623


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 277/548 (50%), Gaps = 78/548 (14%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++L  G+ LH  +I  G  +   +  KL+TFY+    +  A ++ +     +   W  L 
Sbjct: 114 KSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLI 173

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            +Y R G+ Q+A++ + +M  +G++ + F  PSVLKACG   D+G G+++H  +      
Sbjct: 174 SSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIK 233

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD--------------------------- 244
               V ++LI MY KCG V  A+ +FD++ E+D                           
Sbjct: 234 WSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSM 293

Query: 245 --------IVAMNAMVSGYVQRGLATEALNLVEE----------------------IGTP 274
                   I+  N +  GY++ G    AL L+ +                      IG  
Sbjct: 294 WAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDA 353

Query: 275 RVKPNVVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           ++   + ++             N LI+ +S+  D      LFQLM AK     +++W S+
Sbjct: 354 KLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAK----SLITWNSI 409

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM-- 379
           ISG  H   ++EA    +EML  G  P   TI+S+LP CA  AN++ GKE H C +    
Sbjct: 410 ISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFH-CYMTRRE 468

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
             +  L + +ALVDMYA+ G + EAR +FD + ER+ +T+ SMI G    G    A++LF
Sbjct: 469 DFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLF 528

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
            +M   + K DH++  AVL+AC H GLV  GQ LF  M+  Y + P  EH+ACM DL GR
Sbjct: 529 EEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGR 588

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           AG L +A E+I+ M  +P   +W  L+GAC+ H N E+ E AA+ L E++PE+    +L+
Sbjct: 589 AGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLI 648

Query: 559 TDLYANAG 566
            ++YA AG
Sbjct: 649 ANMYAAAG 656



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 175/455 (38%), Gaps = 79/455 (17%)

Query: 126 CQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH--EMHIQGLKQNIFVIP 183
           C  +  A+  F  +  + I   +     +  RG   +A        +H     Q++ V P
Sbjct: 43  CNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHP 102

Query: 184 --SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
             S+L +C  +  +  G ++H  ++   F     +V  L+  YS    +  A  + +   
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 242 EKDIVAMNAMVSGYVQRGLATEALN----------------------------------- 266
                  N ++S YV+ G   +AL+                                   
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 222

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           + E I   R+K +++  N LIS + K G   +   LF     K  E D VSW S+IS   
Sbjct: 223 VHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFD----KIPERDAVSWNSMISVYA 278

Query: 327 HNFCNDEAFDTFKEMLSQ--------------GFCPTSATISSI---------------- 356
                +EAF+ F  M ++              G+  T     ++                
Sbjct: 279 SMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSV 338

Query: 357 -----LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
                L AC+   + + GKEIH  AI         V++AL+ MY++C  +  A  LF  M
Sbjct: 339 ALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLM 398

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ 470
             ++ +TWNS+I GC +    +EA  L  +M     + ++++  +VL  C  V  ++ G+
Sbjct: 399 EAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGK 458

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
                M  +         +  +VD+  R+G++ EA
Sbjct: 459 EFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEA 493



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           ISS+L +C    ++  G+++HG  I +G E    +   LV  Y+    + +A  + +  +
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
             +   WN +I     +G+C +A+  + QM ++  + D+ ++ +VL AC     +  G+ 
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 222

Query: 472 L---FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           +    N  + K+ ++     +  ++ + G+ G++  A ++   +  E D   W +++   
Sbjct: 223 VHESINASRIKWSLIV----HNALISMYGKCGKVGIARDLFDKI-PERDAVSWNSMISVY 277

Query: 529 KNHG 532
            + G
Sbjct: 278 ASMG 281


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 267/511 (52%), Gaps = 42/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+  +I+H  ++ S       + T ++  Y +C  +  A  LF  +PK ++  W ++   
Sbjct: 70  LKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILG 129

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A+ G+    V++F EM I+G++ +   +  +  +   L D+   E IHS  +K    TD
Sbjct: 130 FAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTD 189

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVE--KDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             V ++ I  Y+KCG    A+ VFD + +  K  V+ N+M++GY      ++A+   +++
Sbjct: 190 VSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKM 249

Query: 272 --GTPR-------------VKPNVV--------------------TWNTLISGFSKSGDQ 296
             G  R             V+P V+                      NTLIS +SK GD 
Sbjct: 250 LCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDI 309

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                LF  M  K      VSWT++I+G       DEA   F  M + G  P   TI S+
Sbjct: 310 GSARYLFDNMLGK----TRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISL 365

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           +  C     +  GK I   A   G++ +L V +AL+D+YAKCG +  AR LF  M E++ 
Sbjct: 366 MSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSL 425

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+W ++I GCA +G   EA+ LF QM E   K +H++F AVL AC H G +E G   FN+
Sbjct: 426 VSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNL 485

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M + YKI P  +HY+CM DLLGR GRL EA+E I+ M  +PD+ +W  LL ACK H N+ 
Sbjct: 486 MTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVV 545

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + E  A HL ELEP++A   + + ++YA+AG
Sbjct: 546 IGECVAYHLFELEPQTAVPYVQMANIYASAG 576



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 40/430 (9%)

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
           + +W +       +GY  +A+ +F +M   GL+ N    PSV KAC  L ++   + +H+
Sbjct: 19  VAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHT 78

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            V+K  F  D FV +S++DMY KC  +  A  +F  M ++D+ + N+M+ G+ Q G    
Sbjct: 79  HVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDR 138

Query: 264 ALNLVEEIGTPRVKPNVVTW-----------------------------------NTLIS 288
            ++L  E+G   ++ + VT                                    NT I+
Sbjct: 139 VVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIA 198

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
            ++K G+  +   +F  +  KG++   VSW S+I+G  H     +A   FK+ML  GF  
Sbjct: 199 AYAKCGEFGLAETVFDGID-KGLKTG-VSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRA 256

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
             +TI S+L +C     +  GK IH   I +G + D+ V + L+ MY+KCG I  AR LF
Sbjct: 257 DLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLF 316

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVE 467
           D M  +  V+W +MI G A  G  DEA+ LF+ ME   +K D ++  ++++ C   G +E
Sbjct: 317 DNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALE 376

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           LG +  +       +         ++D+  + G +  A E+  TM  E  L  W  L+  
Sbjct: 377 LG-KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAG 434

Query: 528 CKNHGNIELA 537
           C  +G  + A
Sbjct: 435 CALNGEFKEA 444



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 4/283 (1%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           ++   L  GK++HA  I  G     Q+   LI+ Y++C +I  AR LFD +       W 
Sbjct: 269 VQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWT 328

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+   YA +G   EA+T+F  M   G K ++  I S++  CG    +  G+ I +    +
Sbjct: 329 AMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATAN 388

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               +  V ++LID+Y+KCGS++ A+++F  M EK +V+   +++G    G   EAL L 
Sbjct: 389 GLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLF 448

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVH 327
            ++    +KPN +T+  ++   + +G      + F LM +   + P +  ++ +   L  
Sbjct: 449 FQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGR 508

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
                EAF+  + M    F P     S +L AC    N+  G+
Sbjct: 509 KGRLKEAFEFIQNM---PFKPDVGIWSVLLSACKIHQNVVIGE 548


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 256/485 (52%), Gaps = 34/485 (7%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +AT LI  Y     I  AR LFDE+P+ ++  W  +   Y     H  A  VF EM  + 
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG-SVEKA 233
           L  N F I SVLKAC  +  +  G  +H L +KH      +V ++L+DMY+ C  S++ A
Sbjct: 105 LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDA 164

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
             VF  +  K+ V+   +++GY  R      L +  ++    V+ N  +++  +   +  
Sbjct: 165 CMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSI 224

Query: 294 GDQVMVSKLFQLMRAKGVEP-------------------------------DVVSWTSVI 322
           G      +L   +   G E                                D+++W ++I
Sbjct: 225 GSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLI 284

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           +G   +    E+   F  M S+GF P   T +SI+ ACA+ A +  G++IHG  I  G++
Sbjct: 285 AGYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLD 343

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
           G+L + +AL+DMY+KCG I+++  +F  MS R+ V+W +M+ G   HGY +EA+ELF++M
Sbjct: 344 GNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKM 403

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
                + D + F A+L+AC H GLV+ G R F +M   Y I P  E Y C+VDLLGRAG+
Sbjct: 404 VRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGK 463

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           + EAYE+I++M  +PD  VWG  LGACK H    L ++AA  + +L P  A   ++L+++
Sbjct: 464 VEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNI 523

Query: 562 YANAG 566
           YA  G
Sbjct: 524 YAADG 528



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 163/378 (43%), Gaps = 43/378 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFY-TECQNIHHARMLFDEIPKTNIHRWIAL 150
           + L  G+++H   I  GL     +   L+  Y T C ++  A M+F  I   N   W  L
Sbjct: 123 KCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTL 182

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              Y  R      + VF +M ++ ++ N F     ++AC  +     GE++H+ V KH F
Sbjct: 183 IAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGF 242

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++  V++S++DMY +C    +A + F EM ++D++  N +++GY +R   TE+L +   
Sbjct: 243 ESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSM 301

Query: 271 IGTPRVKPNVVTW-----------------------------------NTLISGFSKSGD 295
           + +    PN  T+                                   N LI  +SK G+
Sbjct: 302 MESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGN 361

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                ++F  M  +    D+VSWT+++ G   +   +EA + F +M+  G  P      +
Sbjct: 362 IADSHQVFGGMSRR----DLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMA 417

Query: 356 ILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-E 413
           IL AC+ A  +  G       +    +  D  +   +VD+  + G + EA  L + M  +
Sbjct: 418 ILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK 477

Query: 414 RNTVTWNSMIFGCANHGY 431
            +   W   +  C  H +
Sbjct: 478 PDECVWGPFLGACKAHTF 495



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L+P ++S  +       +   G+ LHA +   G      +   ++  Y  C     A   
Sbjct: 209 LNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRY 268

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           F E+ + ++  W  L   Y R     E++ VF  M  +G   N F   S++ AC  L+ +
Sbjct: 269 FYEMNQRDLITWNTLIAGYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFL 327

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G++IH  +++     +  + ++LIDMYSKCG++  + +VF  M  +D+V+  AM+ GY
Sbjct: 328 NCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGY 387

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPD 314
              G   EA+ L +++    ++P+ V +  ++S  S +G      + F+LM     + PD
Sbjct: 388 GTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPD 447

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
              +  V+  L      +EA++  + M    F P        L AC +      GK
Sbjct: 448 QEIYGCVVDLLGRAGKVEEAYELIESM---PFKPDECVWGPFLGACKAHTFPNLGK 500


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 274/515 (53%), Gaps = 67/515 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +HA ++ +G  R T     L+T Y +   ++ A+ LFD     ++  W  +  + ++
Sbjct: 206 GKQVHAFVLRNGDWR-TFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQ 264

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-KHSFGTDAF 215
               +EA+   H M   G++ N   + SVL AC HL  +G G++IH+ VL  +    ++F
Sbjct: 265 NDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSF 324

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL-VEEIGTP 274
           V  +L+DMY  C   EK + VFD M  + I   NAM++GYV+     EA+ L VE +   
Sbjct: 325 VGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFEL 384

Query: 275 RVKPN--------------------------VVTW---------NTLISGFSKSGDQVMV 299
            + PN                          VV W         N L+  +S+ G   + 
Sbjct: 385 GLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIA 444

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISG------------LVHNFCNDEA------FDTFKEM 341
             +F  M  K    D+VSW ++I+G            L+H+    +A      FD +++ 
Sbjct: 445 RSIFGSMNRK----DIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDN 500

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
            +    P S T+ ++LP CA+ A + +GKEIH  A+   +  D+ V SALVDMYAKCG +
Sbjct: 501 KNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCL 560

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK------KLDHLSFTA 455
           + +RT+F++MS RN +TWN +I     HG  +EA++LF +M E        + + +++ A
Sbjct: 561 NLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIA 620

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM-ST 514
           +  +  H G+V+ G  LF  M+ K+ I P ++HYAC+VDLLGR+G++ EAY +IKTM S 
Sbjct: 621 IFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSN 680

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
              +  W +LLGACK H N+E+ EIAAK+L  L+P
Sbjct: 681 MKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP 715



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 229/500 (45%), Gaps = 62/500 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK LHA +   G A  T +   L+  Y +C +I  AR +FDEI   +   W ++  A
Sbjct: 101 LNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINA 160

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL-SDIGTGEKIHSLVLKHSFGT 212
             R    + AV +F  M ++ +    F + SV  AC +L + +  G+++H+ VL++    
Sbjct: 161 ACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DW 219

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             F  ++L+ MY+K G V +AK +FD   +KD+V+ N ++S   Q     EAL  +  + 
Sbjct: 220 RTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVML 279

Query: 273 TPRVKPNVVTWNTLISGFSK-----SGDQVMVSKLFQLMRAKGVEPDVVS---------- 317
              V+PN VT  +++   S       G ++     F LM    +E   V           
Sbjct: 280 QSGVRPNGVTLASVLPACSHLEMLGCGKEIHA---FVLMNNDLIENSFVGCALVDMYCNC 336

Query: 318 --------------------WTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSI 356
                               W ++I+G V N  + EA + F EM+ + G  P S T+SS+
Sbjct: 337 KQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSV 396

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPAC    +    + IH C +  G E D +V++AL+DMY++ G I  AR++F  M+ ++ 
Sbjct: 397 LPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDI 456

Query: 417 VTWNSMIFG---CANH------------GYCDEAIELFNQMEERK----KLDHLSFTAVL 457
           V+WN+MI G   C  H            G  +  I  F+  E+ K    K + ++   VL
Sbjct: 457 VSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVL 516

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
             C  +  +  G+ + +    K  +       + +VD+  + G L  +  + + MS   +
Sbjct: 517 PGCAALAALGKGKEI-HAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR-N 574

Query: 518 LFVWGALLGACKNHGNIELA 537
           +  W  L+ A   HG  E A
Sbjct: 575 VITWNVLIMAYGMHGKGEEA 594



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 193/406 (47%), Gaps = 47/406 (11%)

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
           +HQ A++ +  M   G+  + F  P+VLKA   + D+  G+++H+ V K        V +
Sbjct: 66  FHQ-AISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPN 124

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           SL++MY KCG ++ A++VFDE+  +D V+ N+M++   +      A++L   +    V P
Sbjct: 125 SLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGP 184

Query: 279 NVVTW-------NTLISG-------------------FSKSGDQVMVSKLFQLMRAKGV- 311
              T        + LI+G                   F+ +    M +KL ++  AK + 
Sbjct: 185 TSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAKTLF 244

Query: 312 ----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
               + D+VSW ++IS L  N   +EA      ML  G  P   T++S+LPAC+    + 
Sbjct: 245 DVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLG 304

Query: 368 RGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
            GKEIH   ++    +E    V  ALVDMY  C    + R +FD M  R    WN+MI G
Sbjct: 305 CGKEIHAFVLMNNDLIENSF-VGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAG 363

Query: 426 CANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTAC--CHVGLVELGQR--LFNMMQEK 479
              + +  EAIELF +M  E     + ++ ++VL AC  C   L + G    +     EK
Sbjct: 364 YVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEK 423

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            K +        ++D+  R GR+  A  +  +M+ + D+  W  ++
Sbjct: 424 DKYVQNA-----LMDMYSRMGRIEIARSIFGSMNRK-DIVSWNTMI 463



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +A  T+  M++ G  P +    ++L A A   ++  GK++H      G      V ++LV
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
           +MY KCG I  AR +FD+++ R+ V+WNSMI         + A+ LF  M  E       
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSF 187

Query: 452 SFTAVLTACCHV--GLVELGQRL--FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
           +  +V  AC ++  GL+ LG+++  F +    +    RT     +V +  + GR+ EA  
Sbjct: 188 TLVSVAHACSNLINGLL-LGKQVHAFVLRNGDW----RTFTNNALVTMYAKLGRVYEAKT 242

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +      + DL  W  ++ +   +   E A
Sbjct: 243 LFDVFD-DKDLVSWNTIISSLSQNDRFEEA 271



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 72/154 (46%), Gaps = 6/154 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +HA  +   L++   + + L+  Y +C  ++ +R +F+++   N+  W  L  
Sbjct: 524 ALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIM 583

Query: 153 AYARRGYHQEAVTVFHEMHIQG-----LKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVL 206
           AY   G  +EA+ +F  M  +G     ++ N     ++  +  H   +  G  + +++  
Sbjct: 584 AYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKA 643

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           KH     +   + L+D+  + G +E+A  +   M
Sbjct: 644 KHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTM 677


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 277/511 (54%), Gaps = 44/511 (8%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
             G ILH  LI SG   ++ +   L++ Y +  ++  AR LFDE+ + ++  W  + G Y
Sbjct: 166 HDGLILHGYLIKSGFWAISSVQNSLLSMYVDA-DMECARELFDEMHEKDVIAWSVMIGGY 224

Query: 155 ARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            +    Q  + +F +M  + G++ +  V+ SVLKAC    D+ TG  +H LV+   F  D
Sbjct: 225 LQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCD 284

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV +SLIDMYSKC     A KVF+E+ +++ V+ N+M+SG+V     +EA +L+  +  
Sbjct: 285 LFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRK 344

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
            RV+ + VT                                    + LI  ++K     +
Sbjct: 345 ERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEI 404

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             ++F  MR +    DVVSW+++ISG  H    DEA   ++EM      P   TI ++L 
Sbjct: 405 AWEVFARMRRR----DVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLE 460

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC+  A ++R K  HG AI  G   ++ V +A+VDMY+KCG I  +R  FD+++ +N VT
Sbjct: 461 ACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVT 520

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W++MI     +G   EA+ LF +M+    K + ++  +VL AC H GLVE G  LF  M 
Sbjct: 521 WSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMV 580

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM--STEPDLFVWGALLGACKNHGNIE 535
           ++  + P  EHY+CMVD+LGRAG+L  A E+IK M  + +    +WG+LL AC+++G  E
Sbjct: 581 QELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTE 640

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L + A   + ELEP ++A  ++ + +YA  G
Sbjct: 641 LGKEAISRVLELEPSNSAGYLVASSMYAADG 671



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 179/402 (44%), Gaps = 43/402 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALTGAYA 155
           GK LHA LI  G    T I   ++ FY  C +   A  +F+ + ++ +   W  L   + 
Sbjct: 66  GKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHL 125

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
             G     +  F    + G + NI  +  V++AC  L     G  +H  ++K  F   + 
Sbjct: 126 DNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISS 185

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-IGTP 274
           V +SL+ MY     +E A+++FDEM EKD++A + M+ GY+Q       L +  + +  P
Sbjct: 186 VQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVP 244

Query: 275 RVKPNVVTW-----------------------------------NTLISGFSKSGDQVMV 299
            ++P+ V                                     N+LI  +SK  D    
Sbjct: 245 GIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSA 304

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            K+F  +  +    + VSW S++SG V N    EA      M  +       T+ +IL  
Sbjct: 305 FKVFNEISQR----NNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQI 360

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           C    +    K IH   I  G E +  V SAL+D YAKC  I  A  +F +M  R+ V+W
Sbjct: 361 CKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSW 420

Query: 420 NSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC 460
           ++MI G A+ G  DEAI ++ +M+ +  K + ++   +L AC
Sbjct: 421 STMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEAC 462



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 45/361 (12%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ-NIFVIPSVLKACGHLSDIGT 197
           +  + +  WI      +  G  QE V+ +HE+   G++  ++ V P +LKA   LS    
Sbjct: 7   VSGSKLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSH-RH 65

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYV 256
           G+ +H+ ++K  F +   + +S++  Y +CG  + A  VF+ M   +D V+ N ++ G++
Sbjct: 66  GKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHL 125

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVT-----------------------------W---- 283
             G     L           +PN+ T                             W    
Sbjct: 126 DNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISS 185

Query: 284 --NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
             N+L+S +  + D     +LF  M     E DV++W+ +I G +           F++M
Sbjct: 186 VQNSLLSMYVDA-DMECARELFDEMH----EKDVIAWSVMIGGYLQWEEPQVGLQMFRKM 240

Query: 342 -LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
            L  G  P    + S+L ACAS+ ++  G+ +HG  I  G + DL V ++L+DMY+KC  
Sbjct: 241 VLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKD 300

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTA 459
              A  +F+++S+RN V+WNSM+ G   +    EA  L + M +ER + D ++   +L  
Sbjct: 301 AGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQI 360

Query: 460 C 460
           C
Sbjct: 361 C 361



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 189/430 (43%), Gaps = 49/430 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R + +G+++H  +I  G      +   LI  Y++C++   A  +F+EI + N   W ++ 
Sbjct: 264 RDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSML 323

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +     + EA ++   M  + ++ +   + ++L+ C +       + IH ++++    
Sbjct: 324 SGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSE 383

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  V+S+LID Y+KC  +E A +VF  M  +D+V+ + M+SG+   G   EA+ + +E+
Sbjct: 384 ANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEM 443

Query: 272 GTPRVKPNVVT------------------W-----------------NTLISGFSKSGDQ 296
               VKPNV+T                  W                   ++  +SK G+ 
Sbjct: 444 DRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEI 503

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           +   + F  +  K    ++V+W+++I+    N    EA   F EM   G  P   T  S+
Sbjct: 504 LASRRAFDQLALK----NIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSV 559

Query: 357 LPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS--- 412
           L AC+    +  G  +    +  +G+E      S +VDM  + G +  A  +   M    
Sbjct: 560 LAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNL 619

Query: 413 ERNTVTWNSMIFGCANHGYCD---EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           +     W S++  C ++G  +   EAI    ++E      +L  +++  A    GL +  
Sbjct: 620 KNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAA---DGLWDDA 676

Query: 470 QRLFNMMQEK 479
            R+  + +EK
Sbjct: 677 ARIRVLAKEK 686


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 160/510 (31%), Positives = 265/510 (51%), Gaps = 42/510 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+  H       +     +   LI  Y +C  +  AR LFD +   N+  W  +   
Sbjct: 231 LEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAG 290

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +     EA+ +F ++  +G + ++F   S+L +CG L+ I  G ++H+  +K +  +D
Sbjct: 291 YMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESD 350

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V +SLIDMY+KC  + +A+ VF+ + E D ++ NAM+ GY + G    A+++  ++  
Sbjct: 351 EYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRY 410

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSK-------------------------------- 301
             +KP+ +T+ +L+ G S S   + +SK                                
Sbjct: 411 CSLKPSPLTFVSLL-GVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVE 469

Query: 302 ----LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               +F LM  +    D+V W ++I GL  N   +EA   F ++   G  P   T  +++
Sbjct: 470 DAKAVFNLMHNR----DMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALV 525

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
              ++  +M  G++ H   I  G + D HV +AL+DMYAKCGFI E R LF+    ++ +
Sbjct: 526 TVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVI 585

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            WNSMI   A HG  +EA+ +F  M     + ++++F  VL+AC H GLV+ G R F+ M
Sbjct: 586 CWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFM 645

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           + KY I P TEHYA +V+L GR+G+L  A E I+ M  EP   VW +LL AC   GN+E+
Sbjct: 646 KTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEI 705

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
              A +     +P  +  ++L++++YA+ G
Sbjct: 706 GRYATEMALLADPADSGPSVLMSNIYASRG 735



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 250/506 (49%), Gaps = 53/506 (10%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           DR  +   + HA+ +V+G      +A  L+  Y++   +  AR LFD +P  N+  W + 
Sbjct: 24  DRLHRLLPLAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSA 83

Query: 151 TGAYARRGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
              +A+ G  ++AV +F        G   N F++ S L+AC     +  G+++H + ++ 
Sbjct: 84  ISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRI 143

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               + +V ++LI++Y+K G ++ A  VFD +  K+ V   A+++GY Q G    AL L 
Sbjct: 144 GLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELF 203

Query: 269 EEIGTPRVKPNVVTWNTLIS-----GFSKSGDQV-------------------------- 297
            ++G   V+P+     + +S     GF + G Q                           
Sbjct: 204 GKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKC 263

Query: 298 ----MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
               +  KLF  M  +    ++VSWT++I+G + N C+ EA   F ++  +G+ P     
Sbjct: 264 SRLSLARKLFDCMENR----NLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFAC 319

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +SIL +C S A + +G+++H  AI   +E D +V+++L+DMYAKC  ++EAR +F+ ++E
Sbjct: 320 ASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAE 379

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRL 472
            + +++N+MI G +  G    AI++F++M     K   L+F ++L        +EL +++
Sbjct: 380 DDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQI 439

Query: 473 FNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACK 529
             ++    K     + YA   ++D+  +   + +A  +   M    D+ +W A++ G  +
Sbjct: 440 HGLI---VKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNR-DMVIWNAMIFGLAQ 495

Query: 530 NHGNIELAEIAAKHLSELEPESAANN 555
           N    E  E A K  ++L+    A N
Sbjct: 496 N----EQGEEAVKLFNQLQVSGLAPN 517



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 230/482 (47%), Gaps = 38/482 (7%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           + RA+  G+ +H   +  GL     + T LI  Y +   I  A ++FD +P  N   W A
Sbjct: 126 QSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTA 185

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y++ G    A+ +F +M + G++ + FV+ S + AC  L  +  G + H    + +
Sbjct: 186 VITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIA 245

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             TDA V+++LID+Y KC  +  A+K+FD M  +++V+   M++GY+Q     EA+ +  
Sbjct: 246 VETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFW 305

Query: 270 EIGTPRVKPNVVTWNTLISGFSK-----SGDQV---------------------MVSKLF 303
           ++     +P+V    ++++          G QV                     M +K  
Sbjct: 306 QLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCE 365

Query: 304 QLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            L  A+ V     E D +S+ ++I G         A D F +M      P+  T  S+L 
Sbjct: 366 HLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLG 425

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
             +S + +   K+IHG  +  G   DL+  S+L+D+Y+K   + +A+ +F+ M  R+ V 
Sbjct: 426 VSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVI 485

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MIFG A +   +EA++LFNQ++      +  +F A++T    +  +  GQ+    + 
Sbjct: 486 WNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQI- 544

Query: 478 EKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
              K    ++H+    ++D+  + G + E   + ++ +   D+  W +++     HG  E
Sbjct: 545 --IKAGADSDHHVSNALIDMYAKCGFIKEGRLLFES-TLGKDVICWNSMISTYAQHGQAE 601

Query: 536 LA 537
            A
Sbjct: 602 EA 603



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 164/341 (48%), Gaps = 7/341 (2%)

Query: 73  SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           S   SP  +   + +     A++  K +H  ++ SG +      + LI  Y++   +  A
Sbjct: 412 SLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDA 471

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           + +F+ +   ++  W A+    A+    +EAV +F+++ + GL  N F   +++     L
Sbjct: 472 KAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTL 531

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
             +  G++ H+ ++K    +D  V ++LIDMY+KCG +++ + +F+  + KD++  N+M+
Sbjct: 532 VSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMI 591

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GV 311
           S Y Q G A EAL +   +G   V+PN VT+  ++S  + +G      + F  M+ K  +
Sbjct: 592 STYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAI 651

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGK 370
           EP    + SV    V+ F         KE + +    P +A   S+L AC    N+  G+
Sbjct: 652 EPGTEHYASV----VNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGR 707

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
                A+ +    D      + ++YA  G  S+A+ L   M
Sbjct: 708 YATEMAL-LADPADSGPSVLMSNIYASRGLWSDAQKLRQGM 747



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 349 TSATISSILPACASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           T   ++ +L +C +   + R   + H  A+V G   DL + + L+  Y+K G + +AR L
Sbjct: 9   THGGLAQLLLSCLAGDRLHRLLPLAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRL 68

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTAVLTACCHVG 464
           FD+M  +N V+W S I   A HG  ++A+ LF   +     +  +     + L AC    
Sbjct: 69  FDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSR 128

Query: 465 LVELGQRL 472
            V  GQ++
Sbjct: 129 AVSFGQQV 136


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 168/483 (34%), Positives = 263/483 (54%), Gaps = 19/483 (3%)

Query: 89  IRDRALQ--SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KTNI 144
           +  RAL   + + LHAQL++ GL    + A  LI   +  Q   +AR +FD +P    N+
Sbjct: 14  LAQRALSPAAARQLHAQLLLRGLPLPARAAVTLIASSSSPQ---YARAIFDSVPAASANV 70

Query: 145 HRWIALTGAYARRG---YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
           + W A   +YA+        EA  +F  M   G + N F + SVLK+   L       ++
Sbjct: 71  YLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVCQV 130

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H  ++K    +   V ++L+D Y     V+ A++VFDEM   ++V  NAMVSGYV+ G  
Sbjct: 131 HGFLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAGDV 190

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
             A  + + +    V+ + ++WNTL+SG+ + GD  +   LF  M  + V     SW  +
Sbjct: 191 EAARQVFDGM----VERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVN----SWNMM 242

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           IS         ++   F +M    F P +AT++ ++ ACA    +   ++++G      V
Sbjct: 243 ISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCV 302

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E + HV ++LVDM+AKCG  SEA  LF +M  ++ V++N M+   A+HG+  +A++LF Q
Sbjct: 303 EMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQ 362

Query: 442 M-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M E   + D ++F  VL+AC H GLV+ G+  F  M   Y I    +HYACMVDL GR G
Sbjct: 363 MIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRVG 422

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
            + EA+  +K M  +P   +WGALL AC+ H NI++ E+AA+ L  +EP +  N +LL++
Sbjct: 423 LIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEPMNPGNYVLLSN 482

Query: 561 LYA 563
             A
Sbjct: 483 TLA 485


>gi|347954452|gb|AEP33726.1| chlororespiratory reduction 21, partial [Aethionema cordifolium]
          Length = 618

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 262/476 (55%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T ++ FY +   I  A M+FD++ + ++  W  L  
Sbjct: 74  GIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKMIEKDVVTWNLLIS 133

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+     M ++ LK +   I +++ A  H  D+  G+++    L++S  +
Sbjct: 134 GYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDLNLGKQLQCYCLRNSLES 193

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    S+ +DMY+KCG +  AKKVFD  V KD++  N +++ Y +   + EAL L  E+ 
Sbjct: 194 DIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAESSHSGEALRLFYEMQ 253

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV++WN +I    + G       +F  +++ G+ P+++SWT++++GLV N  ++
Sbjct: 254 LESVTPNVISWNLIILSLLRXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSE 313

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA   FK+M   G  P   + +  L AC++ A++  G+ IHG  I      G + + ++L
Sbjct: 314 EAIMYFKKMQESGLRPNPFSXTVALSACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSL 373

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           +DMYAKCG I++A  +F          +N+MI     +G  +EAI L+  +E    K D+
Sbjct: 374 LDMYAKCGDINKAERVFGNKLYSELPLYNAMISAYGLYGKVEEAITLYRDLEALDIKPDN 433

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT +L+AC H G V    ++F  M  K+ + P  EHY  MVDL   +G + EA  ++K
Sbjct: 434 ITFTNLLSACNHTGSVNQAIQIFTDMVSKHGMQPCLEHYGLMVDLFASSGEIEEALRIVK 493

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  EPD  +  +LL  CK     EL +  +K+L E EP+++ N + +++ YA  G
Sbjct: 494 DMPYEPDARMIQSLLAYCKKEHKTELVDYLSKYLLESEPDNSGNYVTISNAYAAGG 549



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/492 (23%), Positives = 232/492 (47%), Gaps = 57/492 (11%)

Query: 122 FYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            Y +C  +  AR +FD +P+ N+  W +L   Y + G ++EA+ +  +M  +G++     
Sbjct: 2   MYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRVT 61

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + + L A  H+  I  G++ H++ + +    D  + +S+++ Y K G +E A+ +FD+M+
Sbjct: 62  VSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKMI 121

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           EKD+V  N ++SGYVQ+GL  +A+   + +    +K + VT +TL+S  + + D  +  +
Sbjct: 122 EKDVVTWNLLISGYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDLNLGKQ 181

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCND--EAFDTFKEMLSQGFCPTSATISSILPA 359
           L        +E D+VS ++ +   ++  C    +A   F   + +     +  +++   +
Sbjct: 182 LQCYCLRNSLESDIVSASTTVD--MYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAES 239

Query: 360 CASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSER---- 414
             S   +R   E+   ++   V   +L + S L     + G ++EA+ +F ++       
Sbjct: 240 SHSGEALRLFYEMQLESVTPNVISWNLIILSLL-----RXGQVTEAKXMFLQIQSTGISP 294

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACC------------ 461
           N ++W +++ G   +GY +EAI  F +M+E   + +  S T  L+AC             
Sbjct: 295 NLISWTTLMNGLVQNGYSEEAIMYFKKMQESGLRPNPFSXTVALSACSNLASLHFGRSIH 354

Query: 462 --------HVGLVELGQRLFNMMQE-----------KYKIMPRTEHYACMVDLLGRAGRL 502
                   H G V L   L +M  +             K+      Y  M+   G  G++
Sbjct: 355 GYIIRNQWHSGSVSLETSLLDMYAKCGDINKAERVFGNKLYSELPLYNAMISAYGLYGKV 414

Query: 503 AEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIELA-----EIAAKHLSELEPESAAN 554
            EA   Y  ++ +  +PD   +  LL AC + G++  A     ++ +KH   ++P    +
Sbjct: 415 EEAITLYRDLEALDIKPDNITFTNLLSACNHTGSVNQAIQIFTDMVSKH--GMQP-CLEH 471

Query: 555 NMLLTDLYANAG 566
             L+ DL+A++G
Sbjct: 472 YGLMVDLFASSG 483



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 178/382 (46%), Gaps = 38/382 (9%)

Query: 222 DMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281
           DMY KCG ++ A+KVFD M E+++VA N+++ GYVQ G+  EA+ L+ ++    ++P  V
Sbjct: 1   DMYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRV 60

Query: 282 TWNTLISGFSKSG-------------------DQVMVSKLF------------QLMRAKG 310
           T +T +S  +  G                   D ++ + +             +++  K 
Sbjct: 61  TVSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKM 120

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           +E DVV+W  +ISG V     ++A    K M  +       TIS+++ A A   ++  GK
Sbjct: 121 IEKDVVTWNLLISGYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDLNLGK 180

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           ++    +   +E D+   S  VDMYAKCG I +A+ +FD    ++ + WN+++   A   
Sbjct: 181 QLQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAESS 240

Query: 431 YCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
           +  EA+ LF +M+ E    + +S+  ++ +    G V   + +F  +Q    I P    +
Sbjct: 241 HSGEALRLFYEMQLESVTPNVISWNLIILSLLRXGQVTEAKXMFLQIQST-GISPNLISW 299

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMST---EPDLFVWGALLGACKNHGNIELAEIAAKHL-- 544
             +++ L + G   EA    K M      P+ F     L AC N  ++        ++  
Sbjct: 300 TTLMNGLVQNGYSEEAIMYFKKMQESGLRPNPFSXTVALSACSNLASLHFGRSIHGYIIR 359

Query: 545 SELEPESAANNMLLTDLYANAG 566
           ++    S +    L D+YA  G
Sbjct: 360 NQWHSGSVSLETSLLDMYAKCG 381


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 259/479 (54%), Gaps = 40/479 (8%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R ++   GK LH  +I +G+ +   ++  LI  Y +C  I  A  LF+++P  +   W +
Sbjct: 15  RHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWAS 74

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           +  A  +       +++F  M  Q GL+ + +V   ++KAC  L  +  G+++H+  +  
Sbjct: 75  ILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVS 134

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               D  V SSL+DMY+KCG  +  + VFD +  K+ ++  AM+SGY Q G   +A+ L 
Sbjct: 135 PVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLF 194

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
           +++       N+++W  LISG  +SG+ V    LF  MR+KG+  D+V            
Sbjct: 195 QKMPV----KNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGI--DIV------------ 236

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                  D F              +SSI+ A A+ A +  GK+IH   I++G E  L V 
Sbjct: 237 -------DPF-------------ILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVS 276

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
           +ALVDMYAKC  +  A+ +F +M +R+ V+W S+I G A HG  +EA+ L+N+M     K
Sbjct: 277 NALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLK 336

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            + ++F  ++ AC HVGLV  G+  FN M + Y I P  +HY C++DLL R+G L EA  
Sbjct: 337 PNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAEN 396

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +IK M  +PD   W ALL AC +H N  +    A HL  L+PE  +  +LL+++YA+A 
Sbjct: 397 LIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAA 455



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 178/372 (47%), Gaps = 46/372 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ GK +HA  IVS ++    + + L+  Y +C      R++FD I   N   W A+  
Sbjct: 120 AMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMIS 179

Query: 153 AYARRGYHQEAVTVFHEMHIQ----------GLKQ----------------------NIF 180
            YA+ G   +A+ +F +M ++          GL Q                      + F
Sbjct: 180 GYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPF 239

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           ++ S++ A  +L+ +G G++IH LV+   + +  FV ++L+DMY+KC  V  AKK+F  M
Sbjct: 240 ILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRM 299

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
           V++DIV+  +++ G  Q GLA EAL+L   + +  +KPN VT+  LI   S  G   +VS
Sbjct: 300 VQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVG---LVS 356

Query: 301 K----LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           K       +++  G+ P +  +T ++  L  +   +EA +  K M    F P  AT +++
Sbjct: 357 KGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAM---PFKPDEATWAAL 413

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF---ISEARTLFDKMSE 413
           L AC    N   G  +    + +  E D      L ++YA       +S+ R L   M  
Sbjct: 414 LSACNHHRNTLIGIRVADHLLSLKPE-DPSTYILLSNIYASAAMWESVSKVRRLMAAMEV 472

Query: 414 RNTVTWNSMIFG 425
           +    ++ ++ G
Sbjct: 473 KKEPGYSCIVLG 484



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 43/214 (20%)

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA   +   GK++H   I  G++    + + L++MY KCG I +A  LF+++  R+ 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTAC-------------- 460
           ++W S++            + +F  M ++  L  DH  F  ++ AC              
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 461 ---------------------CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
                                   GL ++G+ +F+ +  K  I      +  M+    ++
Sbjct: 130 TFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSI-----SWTAMISGYAQS 184

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           GR  +A ++ + M  + +L  W AL+      GN
Sbjct: 185 GRKLDAIQLFQKMPVK-NLLSWTALISGLVQSGN 217


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 266/511 (52%), Gaps = 42/511 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+  +I+H  ++ S       + T ++  Y +C  +  A  LF  +P  ++  W ++   
Sbjct: 70  LKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXG 129

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A+ G+    V++F EM I+G++ +   +  +  +   L D+   E IHS  +K    TD
Sbjct: 130 FAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTD 189

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVE--KDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             V ++ I  Y+KCG    A+ VFD + +  K  V+ N+M++GY      ++A+   +++
Sbjct: 190 VSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKM 249

Query: 272 --GTPR-------------VKPNVV--------------------TWNTLISGFSKSGDQ 296
             G  R             V+P V+                      NTLIS +SK GD 
Sbjct: 250 LXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDI 309

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                LF  M  K      VSWT++I+G       DEA   F  M + G  P   TI S+
Sbjct: 310 GSARYLFDNMLGK----TRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISL 365

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           +  C     +  GK I   A   G++ +L V +AL+D+YAKCG +  AR LF  M E++ 
Sbjct: 366 MSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSL 425

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+W ++I GCA +G   EA+ LF QM E   K +H++F AVL AC H G +E G   FN+
Sbjct: 426 VSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNL 485

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M + YKI P  +HY+CM DLLGR GRL EA+E I+ M  +PD+ +W  LL ACK H N+ 
Sbjct: 486 MTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVV 545

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + E  A HL ELEP++A   + + ++YA+AG
Sbjct: 546 IGECVAYHLFELEPQTAVPYVQMANIYASAG 576



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 205/430 (47%), Gaps = 40/430 (9%)

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
           + +W +       +GY  +A+ +F +M   GL+ N    PSV KAC  L ++   + +H+
Sbjct: 19  VAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHT 78

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            V+K  F  D FV +S++DMY KC  +  A  +F  M  +D+ + N+M+ G+ Q G    
Sbjct: 79  HVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDR 138

Query: 264 ALNLVEEIGTPRVKPNVVTW-----------------------------------NTLIS 288
            ++L  E+G   ++ + VT                                    NT I+
Sbjct: 139 VVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIA 198

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
            ++K G+  +   +F  +  KG++   VSW S+I+G  H     +A   FK+ML  GF  
Sbjct: 199 AYAKCGEFGLAETVFDGID-KGLKT-XVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRA 256

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
             +TI S+L +C     +  GK IH   I +G + D+ V + L+ MY+KCG I  AR LF
Sbjct: 257 DLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLF 316

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVE 467
           D M  +  V+W +MI G A  G  DEA+ LF+ ME   +K D ++  ++++ C   G +E
Sbjct: 317 DNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALE 376

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           LG +  +       +         ++D+  + G +  A E+  TM  E  L  W  L+  
Sbjct: 377 LG-KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAG 434

Query: 528 CKNHGNIELA 537
           C  +G  + A
Sbjct: 435 CALNGEFKEA 444



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 136/283 (48%), Gaps = 4/283 (1%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           ++   L  GK++HA  I  G     Q+   LI+ Y++C +I  AR LFD +       W 
Sbjct: 269 VQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWT 328

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+    A +G   EA+T+F  M   G K ++  I S++  CG    +  G+ I +    +
Sbjct: 329 AMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATAN 388

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               +  V ++LID+Y+KCGS++ A+++F  M EK +V+   +++G    G   EAL L 
Sbjct: 389 GLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLF 448

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVH 327
            ++    +KPN +T+  ++   + +G      + F LM +   + P +  ++ +   L  
Sbjct: 449 FQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGR 508

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
                EAF+  + M    F P     S +L AC    N+  G+
Sbjct: 509 KGRLKEAFEFIQNM---PFKPDVGIWSVLLSACKIHQNVVIGE 548


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 167/510 (32%), Positives = 270/510 (52%), Gaps = 36/510 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L  G  LH+ +I +  A    +   L+  Y +   +  AR  F+ I   +   W  + 
Sbjct: 442 KYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVII 501

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y +     EA  +F  M++ G+  +   + S+L AC  +  +  G+++H L +K    
Sbjct: 502 VGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQE 561

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           T  +  SSLIDMY+KCG+++ A K+   M E+ +V+MNA+++GY Q  L  +A+NL  ++
Sbjct: 562 TKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINL-EQAVNLFRDM 620

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD----------------- 314
               +    +T+ +L+    +     +  ++  L+   G++ D                 
Sbjct: 621 LVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLR 680

Query: 315 ----------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
                            V WT++ISGL  N C+  A   +KEM S    P  AT  S L 
Sbjct: 681 TTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALR 740

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
           ACA  ++++ G E H      G + D    SALVDMYAKCG +  +  +F +MS +++ +
Sbjct: 741 ACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVI 800

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WNSMI G A +GY ++A+ +F++M++     D ++F  VLTAC H G V  G+ +F+MM
Sbjct: 801 SWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMM 860

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
              Y + PR +H ACMVDLLGR G L EA E I  ++ EPD  VW  +LGAC+ HG+   
Sbjct: 861 VNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIR 920

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            + AA+ L ELEP++++  +LL+++YA +G
Sbjct: 921 GQQAAEKLIELEPQNSSPYVLLSNIYAASG 950



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/420 (29%), Positives = 223/420 (53%), Gaps = 9/420 (2%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           + KI+HAQ +  G      +   ++  Y +C ++ +A   F ++   +I  W ++   ++
Sbjct: 77  TNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHS 136

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           ++G+    V  F  +   G+  N F    VL +C  L  +  G ++H  V+K  F + ++
Sbjct: 137 KQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISY 196

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
              +LI MY+KC  +  A+ +FD  VE D V+  +M+ GY++ GL  EA+ + +E+    
Sbjct: 197 CEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVG 256

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
            +P+ V + T+I+ +   G     S LF  M  +    +VV+W  +ISG        EA 
Sbjct: 257 QEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNR----NVVAWNLMISGHAKGGYGVEAI 312

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + F+ M   G   T +T+ S+L A AS A +  G  +H  A+  G+  +++V S+LV MY
Sbjct: 313 EFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMY 372

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFT 454
           AKCG +  A+ +FD ++E+N V WN+M+ G   +GY +E +ELF  M+      D  +++
Sbjct: 373 AKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYS 432

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKT 511
           ++L+AC  +  ++LG +L +++  K K          +VD+  ++G L +A   +E+I+ 
Sbjct: 433 SILSACACLKYLDLGHQLHSVII-KNKFASNLFVGNALVDMYAKSGALEDARQQFELIRN 491



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 195/461 (42%), Gaps = 80/461 (17%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   ++ G+ +H  ++  G   ++     LI  Y +C  +  AR +FD   + +   W +
Sbjct: 172 RLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTS 231

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           + G Y + G  +EAV VF EM   G +                                 
Sbjct: 232 MIGGYIKVGLPEEAVKVFQEMEKVGQE--------------------------------- 258

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D     ++I+ Y   G ++ A  +F  M  +++VA N M+SG+ + G   EA+   +
Sbjct: 259 --PDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQ 316

Query: 270 EIGTPRVKP-----------------------------------NVVTWNTLISGFSKSG 294
            +    +K                                    NV   ++L+S ++K G
Sbjct: 317 NMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCG 376

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                 K+F  +     E +VV W +++ G V N   +E  + F  M S GF P   T S
Sbjct: 377 KMEAAKKVFDTLN----EQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYS 432

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           SIL ACA    +  G ++H   I      +L V +ALVDMYAK G + +AR  F+ +  R
Sbjct: 433 SILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNR 492

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           + V+WN +I G        EA  LF +M     L D +S  ++L+AC  V  +E G+++ 
Sbjct: 493 DNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVH 552

Query: 474 NMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTM 512
            +     K    T+ Y  + ++D+  + G +  A++++  M
Sbjct: 553 CL---SVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACM 590



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 174/447 (38%), Gaps = 112/447 (25%)

Query: 192 LSDIGTGEKI-HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
           LS   T  KI H+  LK  F +   + + ++D+Y+KC  V+ A++ F ++ +KDI+A N+
Sbjct: 71  LSQFSTTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNS 130

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV-------- 297
           ++S + ++G     +     +    V PN  T+  ++S  +     K G QV        
Sbjct: 131 ILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMG 190

Query: 298 -------------MVSKLFQLMRAK-----GVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                        M +K   L  A+      VE D VSWTS+I G +     +EA   F+
Sbjct: 191 FESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQ 250

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           EM   G  P      +++ A                                   Y   G
Sbjct: 251 EMEKVGQEPDQVAFVTVINA-----------------------------------YVDLG 275

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLT 458
            +  A  LF +M  RN V WN MI G A  GY  EAIE F  M +   K    +  +VL+
Sbjct: 276 RLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLS 335

Query: 459 ACCHVGLVELG-----------------------------------QRLFNMMQEKYKIM 483
           A   +  ++ G                                   +++F+ + E+  ++
Sbjct: 336 AIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVL 395

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
                   + +  G A  + E +  +K+    PD F + ++L AC     ++  ++  + 
Sbjct: 396 WNAMLGGYVQN--GYANEVMELFFNMKSCGFYPDDFTYSSILSAC---ACLKYLDLGHQL 450

Query: 544 LSELEPESAANNML----LTDLYANAG 566
            S +     A+N+     L D+YA +G
Sbjct: 451 HSVIIKNKFASNLFVGNALVDMYAKSG 477


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 180/528 (34%), Positives = 265/528 (50%), Gaps = 76/528 (14%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITF---YTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           S +++HAQ+I +GL       +KLI F         + +A  +F+ I + N+  W  +  
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A       A+ ++  M   GL  N +  P +LK+C        G++IH  VLK  +  
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFD-------------------------------EMV 241
           D +V +SLI MY + G +E A+KVFD                               E+ 
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIP 181

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT------------------- 282
            KD+V+ NAM+SGY + G   EAL L +++    V+P+  T                   
Sbjct: 182 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 241

Query: 283 ---W-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
              W             N LI  +SK G+      LF+ +  K    DV+SW ++I G  
Sbjct: 242 VHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYK----DVISWNTLIGGYT 297

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMGVEGD 384
           H     EA   F+EML  G  P   T+ SILPACA    +  G+ IH      + GV   
Sbjct: 298 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNA 357

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
             + ++L+DMYAKCG I  A+ +FD M  R+  +WN+MIFG A HG  + A +LF++M +
Sbjct: 358 SSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRK 417

Query: 445 RK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
                D ++F  +L+AC H G+++LG+ +F  M + YKI P+ EHY CM+DLLG  G   
Sbjct: 418 NGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFK 477

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           EA EMI+TM  EPD  +W +LL ACK H N+EL E  A++L ++EPE+
Sbjct: 478 EAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPET 525



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 187/429 (43%), Gaps = 56/429 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K    G  I  H    ++   + L    ++  I +Y+++  L+  + 
Sbjct: 94  LLKSCAKS-----KAFREGQQIHGH----VLKLGYDLDLYVHTSLISMYVQNGRLEDARK 144

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +  Q       R     T LI  Y     I +A+ LFDEIP  ++  W A+   YA  G 
Sbjct: 145 VFDQ----SSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGN 200

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++EA+ +F +M    ++ +   + +V+ AC     I  G ++H  +  H FG++  +V++
Sbjct: 201 YKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNA 260

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID+YSKCG VE A  +F+ +  KD+++ N ++ GY    L  EAL L +E+      PN
Sbjct: 261 LIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 320

Query: 280 VVT------------------W-------------------NTLISGFSKSGDQVMVSKL 302
            VT                  W                    +LI  ++K GD     ++
Sbjct: 321 DVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQV 380

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  M  + +     SW ++I G   +   + AFD F +M   G  P   T   +L AC+ 
Sbjct: 381 FDSMLTRSLS----SWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSH 436

Query: 363 AANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
           +  +  G+ I    +    +   L     ++D+   CG   EA+ +   M  E + V W 
Sbjct: 437 SGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWC 496

Query: 421 SMIFGCANH 429
           S++  C  H
Sbjct: 497 SLLKACKMH 505


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 166/503 (33%), Positives = 264/503 (52%), Gaps = 73/503 (14%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           ++LHA     GL  L  +AT L+  Y  C ++ +AR+LFDEIP+ N+  W  +   Y++ 
Sbjct: 204 RMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKS 263

Query: 158 G--------------------------YHQ-----EAVTVFHEMHIQGLKQNIFVIPSVL 186
           G                          Y Q     EA+ ++  M   G+  N  +I  ++
Sbjct: 264 GLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLI 323

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
            ACG    +  G++ H ++++  F    F+ +++I  Y+ CG +  A   F         
Sbjct: 324 SACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQF--------- 374

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
                                  E+G+   K +V +WN LISGF ++G      +LF  M
Sbjct: 375 -----------------------ELGS---KDHVSSWNALISGFVRNGMIEQARQLFDEM 408

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                E DV SW+S+ISG   N   D A   F EM++ G  P   T+ S+  A A+   +
Sbjct: 409 P----ERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTL 464

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER--NTVTWNSMIF 424
             G+  H   +   +  + ++ +AL+DMYAKCG I+ A  LF ++ +R  +   WN++I 
Sbjct: 465 MEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIIC 524

Query: 425 GCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A HG+ + +++LF+Q++  R K + ++F  VL+ACCH GLV+ G++ F  M+  Y I 
Sbjct: 525 GLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIE 584

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P  +HY CM+DLLGRAGRL EA EMI+ M  + D+ +WG LL AC+ HGN+E+ E AA++
Sbjct: 585 PNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAEN 644

Query: 544 LSELEPESAANNMLLTDLYANAG 566
           L++L+    A  +LL+++YA+AG
Sbjct: 645 LAKLDISHGAGRVLLSNIYADAG 667



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/525 (22%), Positives = 215/525 (40%), Gaps = 117/525 (22%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--------------- 137
           AL  G+ +H+ +  SGL     +   LI+FY +C+ I +AR LFD               
Sbjct: 67  ALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLA 126

Query: 138 ----------------EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
                           ++P      +  +    A+     EA+ VF +M   G+  N   
Sbjct: 127 GYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVT 186

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + SV+ A  H+  I     +H+L  K        V ++L+ MY  C S+  A+ +FDE+ 
Sbjct: 187 LASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIP 246

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           E+++V  N M++GY + GL   A +L E I       +VV+W T+I G+      V + +
Sbjct: 247 ERNVVTWNVMLNGYSKSGLVDLARDLFERIPA----KDVVSWGTIIDGY------VQIER 296

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           L                              EA   ++ ML  G  P    I  ++ AC 
Sbjct: 297 L-----------------------------GEALRMYRSMLRTGVGPNEVMIVDLISACG 327

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC----------------------- 398
               +  G++ HG  +  G +    +++ ++  YA C                       
Sbjct: 328 RTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNA 387

Query: 399 --------GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
                   G I +AR LFD+M ER+  +W+SMI G + +   D A++LF++M     + +
Sbjct: 388 LISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPN 447

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY-ACMVDLLGRAGRLAEAYEM 508
            ++  +V +A   +G +  G+     +      +P  ++  A ++D+  + G +  A ++
Sbjct: 448 EITMVSVFSAIATLGTLMEGRWAHEYILSNS--IPLNDNLNAALIDMYAKCGSITIALQL 505

Query: 509 I-----KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
                 +  S  P    W A++     HG+   A ++ K  S+L+
Sbjct: 506 FYEIQDRVSSVSP----WNAIICGLAMHGH---ANVSLKLFSQLQ 543



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 150/321 (46%), Gaps = 52/321 (16%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S LK+C  L  +  G++IHSLV K    ++ FV +SLI  Y KC  +  A+ +FD     
Sbjct: 57  SALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVL 116

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           D V+ N M++GYV+ G    A +L E++         V++ T++ G +++   +    +F
Sbjct: 117 DPVSCNIMLAGYVKSGSLDNARHLFEKMPI----KGCVSYTTMVMGLAQNNCWLEAIGVF 172

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           + MR  GV P+ V+  SVIS   H                         +  IL      
Sbjct: 173 KDMRFAGVIPNEVTLASVISAYSH-------------------------VGGILNC---- 203

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
                 + +H  +  +G+E    V + LV MY  C  +  AR LFD++ ERN VTWN M+
Sbjct: 204 ------RMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVML 257

Query: 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
            G +  G  D A +LF ++  +   D +S+  ++    +V +  LG+ L       Y+ M
Sbjct: 258 NGYSKSGLVDLARDLFERIPAK---DVVSWGTIIDG--YVQIERLGEAL-----RMYRSM 307

Query: 484 PRT---EHYACMVDLLGRAGR 501
            RT    +   +VDL+   GR
Sbjct: 308 LRTGVGPNEVMIVDLISACGR 328



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%)

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T+ S L +C+S   + +G++IH      G+  ++ V+++L+  Y KC  IS AR+LFD  
Sbjct: 54  TLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTC 113

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
           S  + V+ N M+ G    G  D A  LF +M
Sbjct: 114 SVLDPVSCNIMLAGYVKSGSLDNARHLFEKM 144


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 256/474 (54%), Gaps = 42/474 (8%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           Q G+I  A+LI   +     +A   +I  YT+   +  A+ LF ++P  N   W A+   
Sbjct: 470 QVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG 529

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + +    +EA+ +  E+H  G   +     S L AC ++ D+  G  IHSL +K     +
Sbjct: 530 FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN 589

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           ++V++ LI MY+KCG+VE    VF                                   T
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFR----------------------------------T 615

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
            RVK + V+WN+LISG S++        +F+ M  +    DVVSWT++IS  V     + 
Sbjct: 616 IRVK-DTVSWNSLISGLSENYMLDDARVVFEKMPKR----DVVSWTAIISAYVQAGHGEV 670

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A D F +ML++G  P   T++S+L AC +   ++ G++ H     +G +  L V ++L+ 
Sbjct: 671 ALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLIT 730

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLS 452
           MY KCG+  +   +F++M E + +TWN+++ GCA +G   EAI++F QME    L D +S
Sbjct: 731 MYFKCGY-EDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMS 789

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  VL AC H GLV+ G   FN M +KY IMP   HY CMVDLLGRAG L+EA  +I+ M
Sbjct: 790 FLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENM 849

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +PD  +W ALLGAC+ H N+EL +  A+ L ++    +A  +LL++L+A+ G
Sbjct: 850 PVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQG 903



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 234/503 (46%), Gaps = 38/503 (7%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           ++L+  K+A DA    I G+  +  + +   S   + +   YS    +Y  D    S K 
Sbjct: 75  VLLTPKKNACDASHVGIGGVLSQEGHPIAFFSEKLNNTRRRYSRVYSLYSHD----SLKH 130

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNI--HHARMLFDEIPKTNIHRWIALTGAYARR 157
           L +Q      ++L     + + +  + + +  H +     E P+T++ +         R 
Sbjct: 131 LTSQ------SKLNTRHARWMDYLQQFKFVIRHKSGAKNKETPQTHLFQCNTRIQELGRL 184

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G  +EA  VF+EM    +++++    S++        +        L+     G +    
Sbjct: 185 GRVEEARRVFNEM----IQRDVVSWNSMINGYSQNGKVDEAR----LLFDAFVGKNIRTW 236

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           + L+  Y+K G +E+A++VF+ M E+++V+ NAM+SGYVQ G    A  L +E+     +
Sbjct: 237 TILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP----E 292

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
            NV +WN++++G+          +LF  M     E + VSW  +ISG VH     EA+D 
Sbjct: 293 KNVASWNSVVTGYCHCYRMSEARELFDQMP----ERNSVSWMVMISGYVHISDYWEAWDV 348

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F +M      P  +    +L A     ++     +   AI  G EGD+ V SA+++ Y +
Sbjct: 349 FVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTR 408

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457
            G +  A   F+ M ERN  +W +MI   A  G  D+AI+L+ ++ E+      + TA++
Sbjct: 409 NGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV---ATKTAMM 465

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           TA   VG ++  + +F+ +     + P    +  ++    + G L EA ++ + M  + +
Sbjct: 466 TAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-N 519

Query: 518 LFVWGALL-GACKNHGNIELAEI 539
              W A++ G  +N  + E  E+
Sbjct: 520 SASWAAMIAGFVQNEESREALEL 542



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 164/384 (42%), Gaps = 106/384 (27%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH----------------------- 130
           ++ G+++H+  I +G    + +   LI+ Y +C N+                        
Sbjct: 571 VEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISG 630

Query: 131 --------HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
                    AR++F+++PK ++  W A+  AY + G+ + A+ +F +M  +G+K N   +
Sbjct: 631 LSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTV 690

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            S+L ACG+L  I  GE+ H+L+ K  F T  FV +SLI MY KCG  E    VF+EM E
Sbjct: 691 TSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPE 749

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
            D++  NA++ G  Q GL  EA+                                   K+
Sbjct: 750 HDLITWNAVLVGCAQNGLGKEAI-----------------------------------KI 774

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ M  +G+ PD +S+  V+    H    DE +  F  M  +           I+P    
Sbjct: 775 FEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQK---------YGIMPL--- 822

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNS 421
                                 ++  + +VD+  + G++SEA  L + M  + ++V W +
Sbjct: 823 ----------------------VYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEA 860

Query: 422 MIFGCANHGYCDEAIELFNQMEER 445
           ++  C  H      +EL  ++ ER
Sbjct: 861 LLGACRIH----RNVELGQRVAER 880



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 117/255 (45%), Gaps = 7/255 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G+  HA +   G      +   LIT Y +C        +F+E+P+ ++  W A+  
Sbjct: 702 AIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKC-GYEDGFCVFEEMPEHDLITWNAVLV 760

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
             A+ G  +EA+ +F +M ++G+  +      VL AC H   +  G    +S+  K+   
Sbjct: 761 GCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIM 820

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
              +  + ++D+  + G + +A+ + + M V+ D V   A++ G  +     E    V E
Sbjct: 821 PLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALL-GACRIHRNVELGQRVAE 879

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVISGLVHN 328
                 KP   T+  L + F+  G    V+++ +LM+ +G+  EP  +SW  V + L   
Sbjct: 880 RLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPG-ISWIQVKNKLHCF 938

Query: 329 FCNDEAFDTFKEMLS 343
              D   D  +E+ S
Sbjct: 939 VTGDRTHDQIEEIYS 953


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 256/505 (50%), Gaps = 73/505 (14%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           +A  +F  I + N   W  +   YA       A+ ++  M   GL  N +  P +LK+C 
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD------------ 238
                  G++IH  VLK  +  D +V +SLI MY++ G +E A KVFD            
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 239 -------------------EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
                              E+  KD+V+ NAM+SGY + G   EAL L +E+    V+P+
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 280 ----------------------VVTW-------------NTLISGFSKSGDQVMVSKLFQ 304
                                 V +W             N LI  +SK G       LF+
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +  K    DVVSW ++I G  H     EA   F+EML  G  P   TI SILPACA   
Sbjct: 258 GLSCK----DVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLG 313

Query: 365 NMRRGKEIHGC--AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            +  G+ IH      +  V     +R++L+DMYAKCG I  A  +F+ M  ++  +WN+M
Sbjct: 314 AIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAM 373

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           IFG A HG  +   +LF++M +   + D ++F  +L+AC H G ++LG+ +F  M + Y 
Sbjct: 374 IFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYD 433

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P+ EHY CM+DLLG +G   EA EMIKTM  EPD  +W +LL AC+ HGN+ELAE  A
Sbjct: 434 ITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFA 493

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           ++L ++EPE+  + +LL+++YA AG
Sbjct: 494 RNLMKVEPENPGSYVLLSNIYATAG 518



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 157/353 (44%), Gaps = 43/353 (12%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T LIT Y    NI  A+ +FDEIP  ++  W A+   YA  G ++EA+ +F EM    ++
Sbjct: 136 TALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVR 195

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            +   + +VL AC     +  G ++HS +  H FG++  +V++LID+YSKCG VE A  +
Sbjct: 196 PDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGL 255

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT-------------- 282
           F+ +  KD+V+ N ++ GY    L  EAL L +E+      PN VT              
Sbjct: 256 FEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAI 315

Query: 283 ----W-------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
               W                    +LI  ++K GD     ++F  M  K +     SW 
Sbjct: 316 DIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS----SWN 371

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV- 378
           ++I G   +   +  FD F  M   G  P   T   +L AC+ +  +  G+ I       
Sbjct: 372 AMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQD 431

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
             +   L     ++D+    G   EA+ +   M  E + V W S++  C  HG
Sbjct: 432 YDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHG 484


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 278/543 (51%), Gaps = 68/543 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLI---TFYTECQNIHHARMLFDEIPKTNIHRWI 148
           + LQS +++HAQ+I +GL       +KL+           + +A  +F+ I + N+  W 
Sbjct: 44  KTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWN 103

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
            +   +A       A+ ++  M   GL  N +  P +LK+C        G++IH  VLK 
Sbjct: 104 TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 163

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFD------------------------------ 238
            +  D FV +SLI +Y + G +E A+KVFD                              
Sbjct: 164 GYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLF 223

Query: 239 -EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-- 295
            E+  KD+V+ NAM+SGY + G   EAL L +E+    ++P+  T  T++S  ++SG   
Sbjct: 224 DEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIE 283

Query: 296 ---QV---------------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLV 326
              QV                     + SK  +L  A G+       DV+SW ++I G  
Sbjct: 284 LGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYT 343

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMGVEGD 384
           H     EA   F+EML  G  P   T+ SILPACA    +  G+ IH      +      
Sbjct: 344 HMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNA 403

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
             +R++L+DMYAKCG I  A  +F+ +  ++  +WN+MIFG A HG  D A ++F++M +
Sbjct: 404 SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRK 463

Query: 445 RK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              + D ++F  +L+AC   G+++LG+ +F  M + YKI P+ EHY CM+DLLG +G   
Sbjct: 464 IGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFK 523

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA EMI  M  EPD  +W +LL ACK  GN+EL E  A++L ++EPE+    +LL+++YA
Sbjct: 524 EAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYA 583

Query: 564 NAG 566
            AG
Sbjct: 584 TAG 586



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/508 (25%), Positives = 213/508 (41%), Gaps = 100/508 (19%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K    G  I  H    ++   + L    ++  I +Y+++  L+  + 
Sbjct: 140 LLKSCAKS-----KAFKEGQQIHGH----VLKLGYDLDLFVHTSLISVYVQNGRLEDAR- 189

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
              ++      R     T LI  Y     I  A+ LFDEIP  ++  W A+   YA  G 
Sbjct: 190 ---KVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGN 246

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++EA+ +F EM    ++ +   + +V+ AC     I  G ++HS +  H FG++  +V+S
Sbjct: 247 YKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNS 306

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+D+YSKCG +E A  +F+ ++ KD+++ N ++ GY    L  EAL L +E+     +PN
Sbjct: 307 LMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPN 366

Query: 280 VVT------------------W-------------------NTLISGFSKSGDQVMVSKL 302
            VT                  W                    +LI  ++K GD     ++
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQV 426

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  +  K +     SW ++I G   +   D AFD F  M   G  P   T   +L AC+ 
Sbjct: 427 FNSILHKSLS----SWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACS- 481

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
                                    RS ++D+          R +F  M++   +T    
Sbjct: 482 -------------------------RSGMLDL---------GRHIFRTMTQDYKITPKLE 507

Query: 423 IFGC-----ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
            +GC      + G   EA E+ N ME     D + + ++L AC   G VELG+   +  Q
Sbjct: 508 HYGCMIDLLGHSGLFKEAEEMINNMEMEP--DGVIWCSLLKACKIRGNVELGE---SFAQ 562

Query: 478 EKYKIMPRTEH-YACMVDLLGRAGRLAE 504
              KI P     Y  + ++   AGR  E
Sbjct: 563 NLIKIEPENPGCYVLLSNIYATAGRWNE 590


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 178/504 (35%), Positives = 273/504 (54%), Gaps = 52/504 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI--ALTGAYARR 157
           LHAQL+  GL      A+KL++ Y   + +  +R +F   P  +   ++   L  AYA  
Sbjct: 43  LHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALN 102

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG--EKIHSLVLKHSFGTDAF 215
              +EAV VF  M      ++ F    ++KA   LS  G      +HS V+K     D +
Sbjct: 103 ALPREAVAVFSAMP----HRDSFTYSFLIKA---LSSAGVAPLRAVHSHVVKLGSIEDTY 155

Query: 216 VVSSLIDMYSKCGS-------------------------------VEKAKKVFDEMVEKD 244
           V ++LID YSK G                                VE A+++FDEM+EKD
Sbjct: 156 VGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKD 215

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
            V+ N ++ GY + G   EA  L + +     + NVV+W+T++SG+ K GD  M   +F 
Sbjct: 216 TVSWNTLLDGYTKAGDVEEAFKLFQCMP----ERNVVSWSTVVSGYCKKGDMEMARVIFD 271

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M  K    ++V+WT ++S    N   +EA   F +M         A + SIL ACA + 
Sbjct: 272 KMPTK----NLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESG 327

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD-KMSERNTVTWNSMI 423
           ++  GK IH       +    HV +AL+DM+ KCG I+ A  +FD ++ E+++V+WN++I
Sbjct: 328 SLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTII 387

Query: 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G A HG+ D+A++ F QM+ +    D ++   VL+AC H+G VE G+R F  M+  Y +
Sbjct: 388 GGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGV 447

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           +P+ EHY CM+DLLGR G + EA ++IK+M  +P+  +WG+LL AC+ H N+E AEIA  
Sbjct: 448 VPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVN 507

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            LS+L+P +A N  +L+ +YA AG
Sbjct: 508 ELSKLQPSNAGNYAVLSSIYAEAG 531



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 42/381 (11%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           + +H+ ++  G    T +   LI  Y++      A  +F+E+P+ ++  W +   A  R+
Sbjct: 139 RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQ 198

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G  + A  +F EM    L+++     ++L       D+    K+   + + +  + + VV
Sbjct: 199 GEVEGARRMFDEM----LEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVV 254

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           S     Y K G +E A+ +FD+M  K++V    MVS   Q GL  EA  L  ++    V+
Sbjct: 255 SG----YCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVE 310

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG--------------------------- 310
            +V    ++++  ++SG   +  ++ + +R +                            
Sbjct: 311 LDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYV 370

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                VE D VSW ++I G   +   D+A D F +M  QGFCP + T+ ++L AC     
Sbjct: 371 FDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGF 430

Query: 366 MRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMI 423
           +  G+          GV   +     ++D+  + G I EA  L   M  + N V W S++
Sbjct: 431 VEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLL 490

Query: 424 FGCANHGYCDEAIELFNQMEE 444
             C  H   + A    N++ +
Sbjct: 491 SACRLHKNVEYAEIAVNELSK 511



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 172/397 (43%), Gaps = 54/397 (13%)

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++Q++  +P  L    HL      +++H+ +LKH    D    S L+  Y+    +  ++
Sbjct: 23  VEQHLASLPHGLPRLHHL------QELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASR 76

Query: 235 KVFDEMVEKDIVAM--NAMVSGYVQRGLATEALN---------------LVEEIGTPRVK 277
            VF             N ++  Y    L  EA+                L++ + +  V 
Sbjct: 77  GVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSAMPHRDSFTYSFLIKALSSAGVA 136

Query: 278 P---------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
           P               +    N LI  +SK+G     SK+F+ M  +    DVVSW S +
Sbjct: 137 PLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRR----DVVSWNSAM 192

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           + +V     + A   F EML +     + + +++L     A ++    ++  C      E
Sbjct: 193 AAMVRQGEVEGARRMFDEMLEK----DTVSWNTLLDGYTKAGDVEEAFKLFQCM----PE 244

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            ++   S +V  Y K G +  AR +FDKM  +N VTW  M+  CA +G  +EA +LF QM
Sbjct: 245 RNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQM 304

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAG 500
           +E   +LD  +  ++L AC   G + LG+R+   ++ +   + R+ H    ++D+  + G
Sbjct: 305 KEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQ--LGRSTHVCNALIDMFCKCG 362

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            +  A  +  T   E D   W  ++G    HG+ + A
Sbjct: 363 CINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKA 399


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/481 (34%), Positives = 268/481 (55%), Gaps = 47/481 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  +HA +  S       + + L+  Y++C  +  A+  FD +   NI  W +L   
Sbjct: 167 LNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITC 226

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGT 212
           Y + G   +A+ VF  M   G++ +   + SV+ AC   S I  G +IH+ V+K   +  
Sbjct: 227 YEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRN 286

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + ++L+DMY+KC  V +A+ VFD M  +++V+  +MV GY  R  + +A  L   + 
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYA-RAASVKAARL---MF 342

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
           +  ++ NVV+WN LI+G++++G+     +LF L++ + +      W              
Sbjct: 343 SNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI------W-------------- 382

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI------HGCAIVMGVEGDLH 386
                          PT  T  ++L ACA+ A+++ G++       HG     G E D+ 
Sbjct: 383 ---------------PTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIF 427

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
           V ++L+DMY KCG + +   +F++M ER+ V+WN+MI G A +GY   A+E+F +M    
Sbjct: 428 VGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSG 487

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
           +K DH++   VL+AC H GLVE G+R F+ M+ +  + P  +H+ CMVDLLGRAG L EA
Sbjct: 488 QKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEA 547

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            ++I+TM  +PD  VWG+LL ACK HGNIEL +  A+ L E++P ++   +LL+++YA  
Sbjct: 548 NDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAEL 607

Query: 566 G 566
           G
Sbjct: 608 G 608



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 150/295 (50%), Gaps = 14/295 (4%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           +++Y + R +   +++  ++ +  +       T ++  Y    ++  AR++F  + + N+
Sbjct: 295 VDMYAKCRRVNEARLVFDRMPLRNVVS----ETSMVCGYARAASVKAARLMFSNMMEKNV 350

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W AL   Y + G ++EAV +F  +  + +    +   ++L AC +L+D+  G + H+ 
Sbjct: 351 VSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQ 410

Query: 205 VLKHSFG------TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +LKH F       +D FV +SLIDMY KCG VE    VF+ MVE+D+V+ NAM+ GY Q 
Sbjct: 411 ILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQN 470

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVS 317
           G  T AL +  ++     KP+ VT   ++S  S +G      + F  MR + G+ P    
Sbjct: 471 GYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDH 530

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           +T ++  L    C DEA D  + M  Q   P +    S+L AC    N+  GK +
Sbjct: 531 FTCMVDLLGRAGCLDEANDLIQTMPMQ---PDNVVWGSLLAACKVHGNIELGKYV 582



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 40/307 (13%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH+ ++K  F ++ F+ + L+D Y KCG  E A+KVFD M +++  + NA++S   + G
Sbjct: 40  RIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFG 99

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
              EA N+ + +                                        EPD  SW 
Sbjct: 100 KLDEAFNVFKSMP---------------------------------------EPDQCSWN 120

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           +++SG   +   +EA   F +M S+ F     +  S L ACA   ++  G +IH      
Sbjct: 121 AMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKS 180

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
               D+++ SALVDMY+KCG ++ A+  FD M+ RN V+WNS+I     +G   +A+E+F
Sbjct: 181 RYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF 240

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
             M +   + D ++  +V++AC     +  G ++   + ++ K          +VD+  +
Sbjct: 241 VMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAK 300

Query: 499 AGRLAEA 505
             R+ EA
Sbjct: 301 CRRVNEA 307



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 34/215 (15%)

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           S+  + +L +C  + +    + IH   I      ++ +++ LVD Y KCG+  +AR +FD
Sbjct: 19  SSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFD 78

Query: 410 KMSERNTV-------------------------------TWNSMIFGCANHGYCDEAIEL 438
           +M +RNT                                +WN+M+ G A H   +EA+  
Sbjct: 79  RMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRF 138

Query: 439 FNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F  M  E   L+  SF + L+AC  +  + +G ++  ++  K + +      + +VD+  
Sbjct: 139 FVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALIS-KSRYLLDVYMGSALVDMYS 197

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           + G +A A      M+   ++  W +L+   + +G
Sbjct: 198 KCGVVACAQRAFDGMAVR-NIVSWNSLITCYEQNG 231


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/483 (33%), Positives = 261/483 (54%), Gaps = 41/483 (8%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           I +  R R +     +HAQLI +G ++   +  +L+   ++C  I +A  +F      N+
Sbjct: 53  ISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNV 112

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
           + + AL   +   G + EA+ ++  M  + +  + +++ S+LKACG    +  G ++HS 
Sbjct: 113 YLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSR 172

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            LK  F ++  V   ++++Y KCG +  A++VF+EM E D+VA   M+S Y  +GL    
Sbjct: 173 ALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGL---- 227

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
              VEE G                             +F  +R K    D V WT++I G
Sbjct: 228 ---VEEAGA----------------------------VFSRVRRK----DTVCWTAMIDG 252

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
            V N   + A + F+ M  +   P   TI  +L AC+    +  G+ +H       +E +
Sbjct: 253 FVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELN 312

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           L V +AL++MY++CG I EA+T+FD+M +R+ +T+N+MI G + +G   +AIELF  M  
Sbjct: 313 LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVG 372

Query: 445 RK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
           R+ +  +++F  VL AC H GLV+ G  +F+ M   Y++ P+ EHY CMVDLLGR GRL 
Sbjct: 373 RRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLE 432

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EAY++I+TM   PD  + G LL ACK H N+EL E  AK L +     +   +LL+ +YA
Sbjct: 433 EAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYA 492

Query: 564 NAG 566
           ++G
Sbjct: 493 SSG 495



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 160/352 (45%), Gaps = 35/352 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK----------- 141
           AL+ G+ +H++ +  G +    +  +++  Y +C  +  AR +F+E+P+           
Sbjct: 162 ALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISS 221

Query: 142 --------------TNIHR-----WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
                         + + R     W A+   + R      A+  F  M  + ++ N F I
Sbjct: 222 YSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTI 281

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
             VL AC  L  +  G  +HS + K     + FV ++LI+MYS+CGS+++A+ VFDEM +
Sbjct: 282 VCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD 341

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           +D++  N M+SG    G + +A+ L   +   R++P  VT+  +++  S  G      ++
Sbjct: 342 RDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEI 401

Query: 303 FQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           F  M R   VEP +  +  ++  L      +EA+D  + M      P    + ++L AC 
Sbjct: 402 FHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACK 458

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
              N+  G+++       G + D      L  +YA  G   EA  +  KM E
Sbjct: 459 MHKNLELGEQVAKELEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 509


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 275/476 (57%), Gaps = 41/476 (8%)

Query: 95  QSGKILHAQLIVSGLA-RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +SG  + A+++   +  + T     +I+ + +   +  A++ F+++ + ++  W A+   
Sbjct: 192 KSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISG 251

Query: 154 YARRGYHQEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y + G+ +EA+ +F +M +    K + F + S L AC +L ++  G++IH+ +++  F T
Sbjct: 252 YNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDT 311

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              V ++LI MYSK G VE A+K+ ++          +M+S            NL     
Sbjct: 312 FGAVGNALISMYSKSGGVEIAQKIIEQ----------SMIS------------NL----- 344

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                 +V+ +  L+ G+ K GD     ++F  +R +    DVV+WT++I G V N  N 
Sbjct: 345 ------DVIAFTALLDGYVKLGDINPARRIFDSLRVR----DVVAWTAMIVGYVQNGFNQ 394

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +A + F+ M+ +G  P + T++++L   +S A++  G++IH  A   G    + V +AL+
Sbjct: 395 DAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALI 454

Query: 393 DMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
            MYAK G I++AR +F+ +  +R+T+TW SMI   A HG  +EA+ LF +M E   K DH
Sbjct: 455 TMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDH 514

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           +++  VL+AC HVGLVE G+  +N+MQ  +KI+P   HYACM+DL GRAG L EA+  I+
Sbjct: 515 ITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIE 574

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  EPD+  WG+LL +CK H N+ELAE+AA+ L  +EPE++     L ++Y+  G
Sbjct: 575 NMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACG 630



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 220/503 (43%), Gaps = 106/503 (21%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +GK +HA++I +GL     +   L+ FY +   I+ A  +FDE+P  ++  W  +   YA
Sbjct: 31  TGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYA 90

Query: 156 RRGYHQEAVTVFHEMH----------IQGLKQ---------------------NIFVIPS 184
           + G  +EA  VF EM           I G  Q                       F + +
Sbjct: 91  KGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTN 150

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL +C  +  +G G K+HS V+KH   +   V +SL++MY+K G    AK VFD M  K 
Sbjct: 151 VLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKS 210

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
             + N M+S ++Q GL   A    E++    ++ +VV+WN +ISG+++ G          
Sbjct: 211 TSSWNTMISSHMQSGLVDLAQVQFEQM----IERDVVSWNAMISGYNQHG---------- 256

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC-PTSATISSILPACASA 363
                                     + EA D F +ML      P   T++S L ACA+ 
Sbjct: 257 -------------------------FDREALDIFSKMLMDSSSKPDKFTLASALSACANL 291

Query: 364 ANMRRGKEIH--------------GCAIVM------GVE-------------GDLHVRSA 390
            N++ GK+IH              G A++       GVE              D+   +A
Sbjct: 292 ENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTA 351

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLD 449
           L+D Y K G I+ AR +FD +  R+ V W +MI G   +G+  +A+ELF  M +E  K +
Sbjct: 352 LLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPN 411

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           + +   +L+    +  ++ G+++             +   A ++ +  ++G + +A  + 
Sbjct: 412 NYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNA-LITMYAKSGSINDARWVF 470

Query: 510 KTMSTEPDLFVWGALLGACKNHG 532
             +  + D   W +++ A   HG
Sbjct: 471 NLIHWKRDTITWTSMIIALAQHG 493


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 244/451 (54%), Gaps = 41/451 (9%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+  Y +  +++ AR + D +P  N   W  L   + ++G   EA+ ++ +M   G +
Sbjct: 317 TALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCR 376

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            NI    SVL AC  L D+  G +IH+  LK    T+ FV SSLIDMY KC     A++V
Sbjct: 377 PNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRV 436

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F+ + EK                                   N V WN+LISG+S +G  
Sbjct: 437 FNSLPEK-----------------------------------NTVCWNSLISGYSWNGKM 461

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           V    LF  M A+    + VSW ++ISG   N    +A + F  ML+ G  P   T+SS+
Sbjct: 462 VEAEGLFNKMPAR----NSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSV 517

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+  ++  G+ +H   + +G+E ++ + +AL DMYAK G +  +R +F +M E+N 
Sbjct: 518 LLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNN 577

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           +TW +M+ G A +G+ +E+I LF  M E     +  +F A+L AC H GLVE     F  
Sbjct: 578 ITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFET 637

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQ  + I P+++HY CMVD+L RAG L EA E++  +S+E D   W +LL AC  + N E
Sbjct: 638 MQ-AHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKE 696

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + E AAK L ELE ++ A  +LL+++YA+ G
Sbjct: 697 IGERAAKKLHELEKDNTAGYVLLSNMYASCG 727



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/476 (24%), Positives = 209/476 (43%), Gaps = 75/476 (15%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G I  A+ +  G+   + ++ T ++    +  ++  A  L++  P  ++  + A+  
Sbjct: 160 VKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMIS 219

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFG 211
            + R   H++A  VF +M    ++ N+  +  V+KAC    +      +  L +K + F 
Sbjct: 220 GFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFE 279

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V +SLI +Y + G    A +VFD+M  +D+V+  A++  Y   G    A  +++ +
Sbjct: 280 KSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAM 339

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  N V+W TLI+   + GD     KL+  M A G  P++                
Sbjct: 340 PA----RNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNI---------------- 379

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
                              +  SS+L ACA+  ++R G  IH  A+ MG   +L V S+L
Sbjct: 380 -------------------SCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSL 420

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--------- 442
           +DMY KC   + A+ +F+ + E+NTV WNS+I G + +G   EA  LFN+M         
Sbjct: 421 IDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWN 480

Query: 443 -------EERKKLDHLSF----------------TAVLTACCHVGLVELGQRLFNMMQEK 479
                  E R+  D L++                ++VL AC ++  +E+G R+ +    K
Sbjct: 481 TMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMG-RMVHAEIVK 539

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             I         + D+  ++G L  +  +   M  E +   W A++     +G  E
Sbjct: 540 LGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMP-EKNNITWTAMVQGLAENGFAE 594



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 161/347 (46%), Gaps = 45/347 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA  +  G +    +++ LI  Y +C+   +A+ +F+ +P+ N   W +L   
Sbjct: 395 LRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISG 454

Query: 154 YARRGYHQEAVTVFHEMH----------IQGLKQNI---------------------FVI 182
           Y+  G   EA  +F++M           I G  +N                        +
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            SVL AC +L  +  G  +H+ ++K     + F+ ++L DMY+K G ++ +++VF +M E
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPE 574

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           K+ +   AMV G  + G A E+++L E++    + PN  T+  ++   S  G        
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHY 634

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ M+A G+ P    +T ++  L    C  EA +   ++ S+     +++ SS+L AC++
Sbjct: 635 FETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSE---LDTSSWSSLLSACST 691

Query: 363 AANM----RRGKEIHGCAIVMGVEGDLHVRSALV-DMYAKCGFISEA 404
             N     R  K++H       +E D      L+ +MYA CG   +A
Sbjct: 692 YRNKEIGERAAKKLH------ELEKDNTAGYVLLSNMYASCGKWKDA 732



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 161/376 (42%), Gaps = 50/376 (13%)

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA---MNAMVSGYVQ 257
           +H+   +     D  V S+L+  Y+         + F + V  D  +    + MVS +V+
Sbjct: 102 LHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVK 161

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            G    A  L    G P  + +VV++ T++    K G      +L++    +     V  
Sbjct: 162 AGDIASARRLF--YGMP--EKSVVSYTTMVDALMKRGSVRDAVELYE----RCPLHSVAF 213

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN------------ 365
           +T++ISG V N  + +AF  F++ML+    P   T+  ++ AC  A              
Sbjct: 214 FTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAV 273

Query: 366 ----MRRGKEIHGCAIV----MG-------VEGDLHVR-----SALVDMYAKCGFISEAR 405
                 +  E+H   I     MG       V  D+ VR     +AL+D+YA  G +  AR
Sbjct: 274 KCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGAR 333

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS-FTAVLTACCHVG 464
            + D M  RN V+W ++I      G   EA++L++QM       ++S F++VL+AC  + 
Sbjct: 334 RVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQ 393

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
            +  G R+        K+   T  +  + ++D+  +  +   A  +  ++  E +   W 
Sbjct: 394 DLRGGTRIH---ANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLP-EKNTVCWN 449

Query: 523 ALLGACKNHGNIELAE 538
           +L+     +G +  AE
Sbjct: 450 SLISGYSWNGKMVEAE 465


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 268/502 (53%), Gaps = 34/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +HA +I  G      +   LIT Y +C +I +ARMLFD++PK +   W A+   Y  
Sbjct: 217 GKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFE 276

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   E + +F  M    +  ++  + +V  AC  L +   G  +H  V+K  FG D  +
Sbjct: 277 NGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISM 336

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MYS  G +E+A+ VF  M  KD+V+  AM++  V   L  +A+   + +    +
Sbjct: 337 NNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGI 396

Query: 277 KPNVVTWNTLISGFS----------------KSG--DQVMVSKLFQLMRAK------GVE 312
            P+ +T  +++S  +                K+G    V+VS     M +K       +E
Sbjct: 397 LPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALE 456

Query: 313 -------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                   +VVSWTS+I GL  N  + EA   F++M  +   P S T+ S+L ACA    
Sbjct: 457 VFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGA 515

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + RGKEIH  A+  GV  D  + +A++DMY +CG    A   F+   +++   WN ++ G
Sbjct: 516 LMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTG 574

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A  G    A+ELF++M E +   D ++F ++L AC   G+V  G   FN+M+ KY + P
Sbjct: 575 YAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTP 634

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HYAC+VD+LGRAG+L +AY+ I+ M   PD  +WGALL AC+ H N+EL EIAAK +
Sbjct: 635 NLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRV 694

Query: 545 SELEPESAANNMLLTDLYANAG 566
            E + +S    +LL +LYA  G
Sbjct: 695 FEKDNKSVGYYILLCNLYAGCG 716



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/496 (29%), Positives = 241/496 (48%), Gaps = 44/496 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RA   G  ++  +  S      ++   L++ +    N+  A  +F ++ + ++  W  L 
Sbjct: 111 RAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLV 170

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G YA+ G   EA+ ++H M    ++ N++  PSVLK C  +SDI  G++IH+ V++  F 
Sbjct: 171 GGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFE 230

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  V ++LI MY KCG +  A+ +FD+M ++D ++ NAM+SGY + G   E L L   +
Sbjct: 231 SDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMM 290

Query: 272 GTPRVKPNVVTWNTLISG----------------FSKS---GDQVMVSKLFQLMRAKGV- 311
               V P+++T  T+ S                   KS   GD  M + L Q+  + G  
Sbjct: 291 RELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRL 350

Query: 312 -----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                        DVVSWT++I+ LV +    +A +T+K M  +G  P   T+ S+L AC
Sbjct: 351 EEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSAC 410

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           A   ++  G  +H  AI  G+   + V ++L+DMY+KC  +  A  +F  +S +N V+W 
Sbjct: 411 ACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWT 470

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK- 479
           S+I G   +    EA+  F QM+E  K + ++  +VL+AC  +G +  G+ +        
Sbjct: 471 SLILGLRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTG 530

Query: 480 ---YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
                 +P       ++D+  R GR   A       S + D+  W  LL      G  +L
Sbjct: 531 VGFDGFLPNA-----ILDMYVRCGRKVPALNQFN--SQKKDVTAWNILLTGYAQQGQAKL 583

Query: 537 A-EIAAKHLS-ELEPE 550
           A E+  K L  E+ P+
Sbjct: 584 AVELFDKMLELEIHPD 599



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 19/269 (7%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  AL  GK +HA  + +G+     +   ++  Y  C     A   F+   K ++  W  
Sbjct: 512 RIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNI 570

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKH 208
           L   YA++G  + AV +F +M    +  +     S+L AC     +  G E  + +  K+
Sbjct: 571 LLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKY 630

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGLATEALN 266
           +   +    + ++D+  + G ++ A     +M +  D     A+++   + R +      
Sbjct: 631 NLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE----- 685

Query: 267 LVEEIGTPRV----KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
            + EI   RV      +V  +  L + ++  G+   VSK+  LMR +G+  D   SW   
Sbjct: 686 -LGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVE- 743

Query: 322 ISGLVHNFCN-DEAFDTFKEM--LSQGFC 347
           I G VH F + D +    KE+  +  GFC
Sbjct: 744 IKGKVHAFLSGDNSHSQSKEINGVLDGFC 772


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/562 (32%), Positives = 285/562 (50%), Gaps = 74/562 (13%)

Query: 78  PAAYSER----IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKL--ITFYTECQNIHH 131
           P   +ER    I +  R  +L+  K  HA +I +G+      A+KL  I   +   ++ +
Sbjct: 24  PTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEY 83

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ---NIFVIPSVLKA 188
           AR +FDEIP+ N   W  L  AYA       ++  F +M +    Q   N +  P ++KA
Sbjct: 84  ARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDM-VSSESQCYPNKYTFPFLIKA 142

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
              +S +  G+ +H + +K + G+D FV +SLI  Y  CG ++ A KVF  + EKD+V+ 
Sbjct: 143 AAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSW 202

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------- 283
           N+M++G+VQ+G   +AL L +++ +  VK + VT                          
Sbjct: 203 NSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEE 262

Query: 284 ----------NTLISGFSKSGDQVMVSKLFQLMRAKG----------------------- 310
                     N ++  ++K G      +LF  M  K                        
Sbjct: 263 NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREV 322

Query: 311 ----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAAN 365
                + D+V+W ++IS    N   +EA   F E+ L +       T+ S L ACA    
Sbjct: 323 LNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGA 382

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G+ IH      G++ + +V SAL+ MY+KCG + +AR +F+ + +R+   W++MI G
Sbjct: 383 LELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGG 442

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HG   EA+++F +M+E   K + ++FT V  AC H GLV+  + LF  M+  Y I+P
Sbjct: 443 LAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVP 502

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HYAC+VD+LGR+G L +A + I+ M   P   VWGALLGACK H N+ LAE+A   L
Sbjct: 503 EDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRL 562

Query: 545 SELEPESAANNMLLTDLYANAG 566
            ELEP +   ++LL+++YA +G
Sbjct: 563 LELEPRNDGAHVLLSNIYAKSG 584



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 116/243 (47%), Gaps = 11/243 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H+ +  +G+     + + LI  Y++C ++  AR +F+ + K ++  W A+ G
Sbjct: 382 ALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIG 441

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG- 211
             A  G   EAV +F++M    +K N     +V  AC H   +   E +    ++ S+G 
Sbjct: 442 GLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF-YKMESSYGI 500

Query: 212 -TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +    + ++D+  + G +EKA K  + M     +  +  V G +       A   + E
Sbjct: 501 VPEDKHYACIVDVLGRSGYLEKAVKFIEAMP----IPPSTSVWGALLGACKIHANLSLAE 556

Query: 271 IGTPRV---KPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           +   R+   +P     + L+S  ++KSG    VS+L + MR  G++ +    +  I G++
Sbjct: 557 MACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMI 616

Query: 327 HNF 329
           H F
Sbjct: 617 HEF 619


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 170/516 (32%), Positives = 260/516 (50%), Gaps = 45/516 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD-----EIPKTNIHR 146
           + L  G  +H  L+  G+     + + LI  Y +C +I +A  +F+     E+   N+  
Sbjct: 156 KCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAV 215

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W  +   Y        A+ +F EM   G+  +   +  VL  C  L D+  G++IH L+L
Sbjct: 216 WNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLIL 275

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
                 D  V ++L++MY KCG  E + ++F      ++V   +++    Q G   EAL 
Sbjct: 276 GLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALE 335

Query: 267 LVEEI----GTP---------------RVKP----------------NVVTWNTLISGFS 291
              E     G P                +KP                +V     L+  + 
Sbjct: 336 FFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYG 395

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           K GD     ++F  +  +    D+VSW ++ISG   N C DEA   F++M S+   P + 
Sbjct: 396 KCGDMEYAQQVFYGLSTR----DLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTV 451

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T++ IL  C   + M   KE+H   +    E +  V ++L+  YAKCG I  +RT+F+K+
Sbjct: 452 TMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKL 511

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ 470
             RN VTWNS++ G   HG  DE    F +M+E   K DH +FT++L++C H G V+ G 
Sbjct: 512 PVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGW 571

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
           + FN M E Y + PR E Y CMVDLLGRAG L +AY++I +M   PD  +WG+LL +CKN
Sbjct: 572 KYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKN 631

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           HGN +LAE+ A H+ EL+  S    +LL +LY ++G
Sbjct: 632 HGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSG 667



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 195/410 (47%), Gaps = 46/410 (11%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIF-VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           G+ ++A+ V+ +    G     F   P ++KA G L D+  G++IH  +LK  F  D FV
Sbjct: 17  GFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFV 76

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVEEIG 272
            +SL+ MY KCG+   A  +F+ M E+D V+ N M+SG+ Q G   ++L     +V+E G
Sbjct: 77  KNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECG 136

Query: 273 TPR-----------------------------VKPNVVTWNTLISG----FSKSGDQVMV 299
                                           VK  V +   L+S     + K GD    
Sbjct: 137 GSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNA 196

Query: 300 SKLFQLMRAKG-VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             +F+ +R    V  ++  W  +I G V N C   A + F EML  G  P S+T+  +L 
Sbjct: 197 ENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLV 256

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
            C+   ++  GK+IHG  + +G++ D+ V +AL++MY KCG    +  +F +    N V 
Sbjct: 257 LCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVM 316

Query: 419 WNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W S++  CA +GY +EA+E F++ M +    D +   A L AC  + L   G  +     
Sbjct: 317 WGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGF-- 374

Query: 478 EKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
              K+   ++ +    +VD  G+ G +  A ++   +ST  DL  W AL+
Sbjct: 375 -AIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTR-DLVSWNALI 422


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 261/507 (51%), Gaps = 73/507 (14%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           + +A  +F+ I + N+  W  +   +A       A+ ++  M   GL  N +  P +LK+
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE----------------- 231
           C     +  G++IH  VLK  +  D +V +SLI MY++ G +E                 
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 232 --------------KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
                          A+K+FDE+  KD+V+ NAM+SGYV+     EAL L +++    VK
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 278 PNVVT----------------------W-------------NTLISGFSKSGDQVMVSKL 302
           P+  T                      W             N LI  +SK G+      L
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           FQ +  K    DV+SW ++I G  H     EA   F+EML  G  P   T+ S+LPACA 
Sbjct: 255 FQGLAKK----DVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310

Query: 363 AANMRRGKEIHGC--AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
              +  G+ IH      + GV     + ++L+DMYAKCG I  A+ +FD M  R+  +WN
Sbjct: 311 LGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWN 370

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MIFG A HG  + A +LF++M +     D ++F  +L+AC H G+++LG+ +F  M + 
Sbjct: 371 AMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQD 430

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           YKI P+ EHY CM+DLLG  G   EA EMI+TM  EPD  +W +LL ACK H N+EL E 
Sbjct: 431 YKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGES 490

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
            A++L ++EPE+  + +LL+++YA AG
Sbjct: 491 YAQNLIKIEPENPGSYVLLSNIYATAG 517



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 187/430 (43%), Gaps = 58/430 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K LI G  I  H    ++   + L     +  I +Y      Q+G++
Sbjct: 71  LLKSCAKS-----KALIEGQQIHGH----VLKLGYDLDMYVNTSLISMYA-----QNGRL 116

Query: 100 LHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
             A  +    +    ++ T LIT Y     I++AR LFDEI   ++  W A+   Y    
Sbjct: 117 EDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETC 176

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
             +EA+ ++ +M    +K +   + +V+ AC     I  G ++HS +  H FG++  +V+
Sbjct: 177 NFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVN 236

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
            LID+YSKCG VE A  +F  + +KD+++ N ++ G+    L  EAL L +E+      P
Sbjct: 237 VLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESP 296

Query: 279 NVVT------------------W-------------------NTLISGFSKSGDQVMVSK 301
           N VT                  W                    +LI  ++K GD     +
Sbjct: 297 NDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQ 356

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M  + +     SW ++I G   +   + AFD F +M   G  P   T   +L AC+
Sbjct: 357 VFDSMLTRSLS----SWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACS 412

Query: 362 SAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTW 419
            +  +  G+ I    +    +   L     ++D+   CG   EA+ +   M  E + V W
Sbjct: 413 HSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIW 472

Query: 420 NSMIFGCANH 429
            S++  C  H
Sbjct: 473 CSLLKACKMH 482


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 268/502 (53%), Gaps = 34/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +HA +I  G      +   LIT Y +C +I +ARMLFD++PK +   W A+   Y  
Sbjct: 217 GKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFE 276

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   E + +F  M    +  ++  + +V  AC  L +   G  +H  V+K  FG D  +
Sbjct: 277 NGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISM 336

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MYS  G +E+A+ VF  M  KD+V+  AM++  V   L  +A+   + +    +
Sbjct: 337 NNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGI 396

Query: 277 KPNVVTWNTLISGFS----------------KSG--DQVMVSKLFQLMRAK------GVE 312
            P+ +T  +++S  +                K+G    V+VS     M +K       +E
Sbjct: 397 LPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALE 456

Query: 313 -------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                   +VVSWTS+I GL  N  + EA   F++M  +   P S T+ S+L ACA    
Sbjct: 457 VFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGA 515

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + RGKEIH  A+  GV  D  + +A++DMY +CG    A   F+   +++   WN ++ G
Sbjct: 516 LMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTG 574

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A  G    A+ELF++M E +   D ++F ++L AC   G+V  G   FN+M+ KY + P
Sbjct: 575 YAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTP 634

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HYAC+VD+LGRAG+L +AY+ I+ M   PD  +WGALL AC+ H N+EL EIAAK +
Sbjct: 635 NLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRV 694

Query: 545 SELEPESAANNMLLTDLYANAG 566
            E + +S    +LL +LYA  G
Sbjct: 695 FEKDNKSVGYYILLCNLYAGCG 716



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/496 (29%), Positives = 241/496 (48%), Gaps = 44/496 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RA   G  ++  +  S      ++   L++ +    N+  A  +F ++ + ++  W  L 
Sbjct: 111 RAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLV 170

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G YA+ G   EA+ ++H M    ++ N++  PSVLK C  +SDI  G++IH+ V++  F 
Sbjct: 171 GGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFE 230

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D  V ++LI MY KCG +  A+ +FD+M ++D ++ NAM+SGY + G   E L L   +
Sbjct: 231 SDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMM 290

Query: 272 GTPRVKPNVVTWNTLISG----------------FSKS---GDQVMVSKLFQLMRAKGV- 311
               V P+++T  T+ S                   KS   GD  M + L Q+  + G  
Sbjct: 291 RELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRL 350

Query: 312 -----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                        DVVSWT++I+ LV +    +A +T+K M  +G  P   T+ S+L AC
Sbjct: 351 EEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSAC 410

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           A   ++  G  +H  AI  G+   + V ++L+DMY+KC  +  A  +F  +S +N V+W 
Sbjct: 411 ACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWT 470

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK- 479
           S+I G   +    EA+  F QM+E  K + ++  +VL+AC  +G +  G+ +        
Sbjct: 471 SLILGLRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTG 530

Query: 480 ---YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
                 +P       ++D+  R GR   A       S + D+  W  LL      G  +L
Sbjct: 531 VGFDGFLPNA-----ILDMYVRCGRKVPALNQFN--SQKKDVTAWNILLTGYAQQGQAKL 583

Query: 537 A-EIAAKHLS-ELEPE 550
           A E+  K L  E+ P+
Sbjct: 584 AVELFDKMLELEIHPD 599



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 19/269 (7%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  AL  GK +HA  + +G+     +   ++  Y  C     A   F+   K ++  W  
Sbjct: 512 RIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNI 570

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKH 208
           L   YA++G  + AV +F +M    +  +     S+L AC     +  G E  + +  K+
Sbjct: 571 LLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKY 630

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGLATEALN 266
           +   +    + ++D+  + G ++ A     +M +  D     A+++   + R +      
Sbjct: 631 NLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE----- 685

Query: 267 LVEEIGTPRV----KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
            + EI   RV      +V  +  L + ++  G+   VSK+  LMR +G+  D   SW   
Sbjct: 686 -LGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVE- 743

Query: 322 ISGLVHNFCN-DEAFDTFKEM--LSQGFC 347
           I G VH F + D +    KE+  +  GFC
Sbjct: 744 IKGKVHAFLSGDNSHSQSKEINGVLDGFC 772


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 268/482 (55%), Gaps = 13/482 (2%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYT---ECQNIHHARMLFDEIPKTNIHR 146
           R ++L   +  HA ++ +GL   T  A+KL+ F     E + + +A  + + I   N   
Sbjct: 18  RAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFT 77

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
             ++  AYA     + A+TVF EM +  +  + +    VLKAC        G +IH L +
Sbjct: 78  HNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFM 137

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K    TD FV ++LI++Y + G  E A+KV D M  +D V+ N+++S Y+ +GL  EA  
Sbjct: 138 KSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARA 197

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           L +E+     + NV +WN +ISG++ +G      ++F  M  K    DVVSW ++++   
Sbjct: 198 LFDEME----ERNVESWNFMISGYAAAGLVKEAREVFDSMPVK----DVVSWNAMVTAYA 249

Query: 327 HNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           H  C +E  + F  ML      P   T+ ++L ACAS  ++ +G+ +H      G+E + 
Sbjct: 250 HVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEG 309

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EE 444
            V +ALVDMY+KCG I +A  +F   S+R+  TWNS+I G + HG   +A+E+F++M  E
Sbjct: 310 FVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYE 369

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             K + ++F  VL+AC HVGL++  ++LF MM   Y I P  EHY CMVDLLGR G+  E
Sbjct: 370 GFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEE 429

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           A E++  +  +    +  +LLGACK  G +E AE  A  L E  P  ++  + +++LYA+
Sbjct: 430 AEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYAS 489

Query: 565 AG 566
            G
Sbjct: 490 HG 491



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 160/425 (37%), Gaps = 110/425 (25%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
             + G+ +H   + S L     +   LI  Y        AR + D +P  +   W +L  
Sbjct: 125 GFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLS 184

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY  +G  +EA  +F EM  + ++   F+I                              
Sbjct: 185 AYLDKGLVEEARALFDEMEERNVESWNFMISG---------------------------- 216

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-I 271
                      Y+  G V++A++VFD M  KD+V+ NAMV+ Y   G   E L +    +
Sbjct: 217 -----------YAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMML 265

Query: 272 GTPRVKPNVVTWNTLIS--------------------------GFSKSGDQVMVSKLFQL 305
                +P+  T   ++S                          GF  +    M SK  ++
Sbjct: 266 DDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKI 325

Query: 306 MRAKGV-----EPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            +A  V     + DV +W S+I+GL VH    D A + F EM+ +GF P   T   +L A
Sbjct: 326 DKALEVFRDTSKRDVSTWNSIITGLSVHGLGKD-ALEIFSEMVYEGFKPNGITFIGVLSA 384

Query: 360 CASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTV 417
           C     + + +++      V G+E  +     +VD+  + G   EA  L +++ ++  ++
Sbjct: 385 CNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASI 444

Query: 418 TWNSMIFGC----------------------------------ANHGYCDEAIELFNQME 443
              S++  C                                  A+HG  DEA+E+  +M 
Sbjct: 445 LLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMR 504

Query: 444 -ERKK 447
            ER K
Sbjct: 505 AERVK 509


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 249/469 (53%), Gaps = 46/469 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA L   GL     +  KL   Y     + ++  LF      ++  W A+   +A RG 
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL 108

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           H++A+  + +M  QG++ N F   S+LK C     I  G+ +HS  +K  F +D +V + 
Sbjct: 109 HEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTG 164

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+D+Y++ G V  A+++FD M EK +V++ AM++ Y + G          E+   RV   
Sbjct: 165 LLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHG----------ELDAARV--- 211

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                                 LF  M     E D V W  +I G   N   +EA   F+
Sbjct: 212 ----------------------LFDGME----ERDGVCWNVMIDGYTQNGMPNEALVLFR 245

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            ML     P   T+ S+L AC     +  G+ +H      G++ ++HV +ALVDMY+KCG
Sbjct: 246 RMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCG 305

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVL 457
            + +AR +FDK+ +++ V WNSMI G A HG+  EA++LF  M  R  L   +++F  +L
Sbjct: 306 SLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMC-RMGLHPTNITFIGIL 364

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           +AC H G V  G  +FN M+++Y I P+ EHY CMV+LLGRAG + +AYE++K M+ EPD
Sbjct: 365 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 424

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +WG LLGAC+ HG I L E   + L +    ++   +LL+++YA  G
Sbjct: 425 PVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVG 473



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 149/293 (50%), Gaps = 9/293 (3%)

Query: 86  EIYIR----DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIP 140
           ++Y+R    D   + G ++ AQ +   +   + ++ T ++T Y +   +  AR+LFD + 
Sbjct: 158 DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME 217

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           + +   W  +   Y + G   EA+ +F  M     K N   + SVL ACG L  + +G  
Sbjct: 218 ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 277

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +HS +  +    +  V ++L+DMYSKCGS+E A+ VFD++ +KD+VA N+M+ GY   G 
Sbjct: 278 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 337

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWT 319
           + EAL L + +    + P  +T+  ++S    SG       +F  M+ + G+EP +  + 
Sbjct: 338 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 397

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            +++ L      ++A++  K M  +   P      ++L AC     +  G++I
Sbjct: 398 CMVNLLGRAGHVEQAYELVKNMNIE---PDPVLWGTLLGACRLHGKIALGEKI 447



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 11/179 (6%)

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           +IH      G++    +   L   YA  G +  +  LF +    +   W ++I G A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 431 YCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
             ++A+  + QM  +  + +  +F+++L  C     +E G+ L +   +  K+   ++ Y
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHS---QAVKLGFDSDLY 160

Query: 490 --ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
               ++D+  R G +  A ++  TM  E  L    A+L     HG ++ A +    + E
Sbjct: 161 VRTGLLDVYARGGDVVSAQQLFDTMP-EKSLVSLTAMLTCYAKHGELDAARVLFDGMEE 218


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/513 (32%), Positives = 267/513 (52%), Gaps = 42/513 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L++G+ +H  ++ +G  +    A  L+  Y++  +I  A  +F+++P  ++  W A  
Sbjct: 219 RDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFI 278

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
                 G+   A+ +  +M   GL  N+F + SVLKAC        G +IH  ++K    
Sbjct: 279 SGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVAD 338

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D FV   L+DMY+K G ++ A+KVFD M  +D++  NA++SG    G   E L+L   +
Sbjct: 339 FDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRM 398

Query: 272 GTPRVKPNVV-------------------------------------TWNTLISGFSKSG 294
               +  +V                                        N LI  + K G
Sbjct: 399 RKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCG 458

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                 K+F+  R+     D++S T++++ L      ++A   F +ML +G  P S  +S
Sbjct: 459 QLDYAIKVFKESRSD----DIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLS 514

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L AC S +   +GK++H   I      D+   +ALV  YAKCG I +A   F  + ER
Sbjct: 515 SLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPER 574

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
             V+W++MI G A HG+   A++LF++M +E    +H++ T+VL+AC H GLV+  ++ F
Sbjct: 575 GIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYF 634

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M+E + I    EHYACM+D+LGRAG+L +A E++  M  + +  VWGALLGA + H +
Sbjct: 635 ESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRD 694

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            EL  +AA+ L  LEPE +  ++LL + YA+AG
Sbjct: 695 PELGRMAAEKLFTLEPEKSGTHVLLANTYASAG 727



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 161/550 (29%), Positives = 249/550 (45%), Gaps = 98/550 (17%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P      +  +   R+L +G  LH+ L+ SGL  L   +  L+T Y+ C+    AR +F
Sbjct: 3   TPETIGSALARFGTSRSLFAGAHLHSHLLKSGL--LAGFSNHLLTLYSRCRLPSAARAVF 60

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           DEIP      W +L  AY+  G  ++A+  F  M  +G+  N F +P VLK      D+ 
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCA---PDVR 117

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV----EKDIVAMNAMV 252
            G ++H+L +      D FV ++L+ +Y   G V++A+++FDE V    E++ V+ N M+
Sbjct: 118 FGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMI 177

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPN--------------------------------- 279
           S YV+   + +A+ +  E+     +PN                                 
Sbjct: 178 SAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYE 237

Query: 280 --VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             V T N L+  +SK GD  M + +F+ M A     DVVSW + ISG V +  +  A + 
Sbjct: 238 KDVFTANALVDMYSKLGDIEMAATVFEKMPA----ADVVSWNAFISGCVTHGHDHRALEL 293

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
             +M S G  P   T+SS+L ACA A     G++IHG  +    + D  V   LVDMYAK
Sbjct: 294 LLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAK 353

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLD------- 449
            GF+ +AR +FD M  R+ + WN++I GC++ G   E + LF++M +E   LD       
Sbjct: 354 HGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLA 413

Query: 450 -HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
             L  TA   A CH        R  + + EK  ++  +     ++D   + G+L  A ++
Sbjct: 414 SVLKSTASSEAICHT-------RQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKV 466

Query: 509 IK-----------TMST-----------------------EPDLFVWGALLGACKNHGNI 534
            K           TM T                       EPD FV  +LL AC +    
Sbjct: 467 FKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAY 526

Query: 535 ELAEIAAKHL 544
           E  +    HL
Sbjct: 527 EQGKQVHAHL 536



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 129/516 (25%), Positives = 237/516 (45%), Gaps = 58/516 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI----PKTNIHRWIALTG 152
           G  +HA  + + L     +A  L+  Y     +  AR +FDE      + N   W  +  
Sbjct: 119 GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMIS 178

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY +     +A+ VF EM   G + N F    V+ AC    D+  G ++H  V++  +  
Sbjct: 179 AYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEK 238

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  ++L+DMYSK G +E A  VF++M   D+V+ NA +SG V  G    AL L+ ++ 
Sbjct: 239 DVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMK 298

Query: 273 TPRVKPNVVTWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV-- 311
           +  + PNV T ++++   + +G                   D+ +   L  +    G   
Sbjct: 299 SSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLD 358

Query: 312 ----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPA 359
                       D++ W ++ISG  H+  + E    F  M  +G        T++S+L +
Sbjct: 359 DARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKS 418

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            AS+  +   +++H  A  +G+  D HV + L+D Y KCG +  A  +F +    + ++ 
Sbjct: 419 TASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISS 478

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF--TAVLTACCHVGLVELGQRLF-NMM 476
            +M+   +   + ++AI+LF QM  RK L+  SF  +++L AC  +   E G+++  +++
Sbjct: 479 TTMMTALSQCDHGEDAIKLFVQM-LRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLI 537

Query: 477 QEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
           + ++     ++ +A   +V    + G + +A +M  +   E  +  W A++G    HG+ 
Sbjct: 538 KRQFT----SDVFAGNALVYAYAKCGSIEDA-DMAFSGLPERGIVSWSAMIGGLAQHGHG 592

Query: 535 ELA----------EIAAKHLSELEPESAANNMLLTD 560
           + A           +A  H++     SA N+  L D
Sbjct: 593 KRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVD 628


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 286/546 (52%), Gaps = 71/546 (13%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR--------------- 133
           I +R L +GK LH+  I S +   T  +   I  Y++C  +  AR               
Sbjct: 19  IAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFN 78

Query: 134 ----------------MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
                            LFD+IP+ ++  +  L  AYA  G    A+ +F  M   GL  
Sbjct: 79  AIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDM 138

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           + F + +V+ AC    D+G   ++HS+ +   F +   V ++L+  Y K G ++ AK+VF
Sbjct: 139 DXFTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVF 196

Query: 238 DEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----- 291
             M   +D V+ N+M+  Y Q    ++AL L +E+    +  ++ T  ++++ F+     
Sbjct: 197 YGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDL 256

Query: 292 -----------KSG---DQVMVSKLFQLMRAKG-------------VEPDVVSWTSVISG 324
                      K+G   +  + S L  L    G              EPD+V W +++SG
Sbjct: 257 SGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316

Query: 325 LVHN--FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
              N  F  D A + F++M   G+ P   +   ++ AC++ ++  +GK+IH  A+   + 
Sbjct: 317 YSQNEEFLED-ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIP 375

Query: 383 GD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
            + + V +AL+ MY+KCG + +AR LFD+M+E NTV+ NSMI G A HG   E++ LF  
Sbjct: 376 SNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQW 435

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M ER+     ++F +VL+AC H G VE G   FNMM+EK+ I P  EHY+CM+DLLGRAG
Sbjct: 436 MLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAG 495

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           +L+EA  +I  M   P    W +LLGAC+ HGNIELA  AA  + +LEP +AA  ++L++
Sbjct: 496 KLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSN 555

Query: 561 LYANAG 566
           +YA+AG
Sbjct: 556 MYASAG 561



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 166/326 (50%), Gaps = 10/326 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALTG 152
           L  G   H QLI +G  + + + + LI  Y++C   +   R +F+EI + ++  W  +  
Sbjct: 256 LSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVS 315

Query: 153 AYAR-RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            Y++   + ++A+  F +M   G + N      V+ AC +LS    G++IHSL LK    
Sbjct: 316 GYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIP 375

Query: 212 TDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           ++   V ++LI MYSKCG+++ A+++FD M E + V++N+M++GY Q G+  E+L+L + 
Sbjct: 376 SNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQW 435

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNF 329
           +   ++ P  +T+ +++S  + +G        F +M+ K  +EP+   ++ +I  L    
Sbjct: 436 MLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAG 495

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVR 388
              EA +    M    F P S   +S+L AC +  N+     +     V+ +E  +    
Sbjct: 496 KLSEAENLIARM---PFNPGSIGWASLLGACRTHGNIELA--VKAANQVLQLEPSNAAPY 550

Query: 389 SALVDMYAKCGFISEARTLFDKMSER 414
             L +MYA  G   E  T+   M +R
Sbjct: 551 VVLSNMYASAGRWEEVATVRKFMRDR 576



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 160/357 (44%), Gaps = 47/357 (13%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +LK C    D+ TG+ +HSL +K       +  +  I +YSKCG +  A+K F ++ + +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           + + NA+++ Y +      A  L ++I     +P++V++NTLIS ++  G+      LF 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQI----PEPDLVSYNTLISAYADCGETAPALGLFS 129

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            MR  G++ D                                     T+S+++ AC    
Sbjct: 130 GMREMGLDMDXF-----------------------------------TLSAVITACCDDV 154

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMI 423
            +    ++H  A+  G +  + V +AL+  Y K G + +A+ +F  M   R+ V+WNSMI
Sbjct: 155 GLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMI 212

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVEL-GQRLFNMMQEKYK 481
                H    +A+ LF +M  R   +D  +  +VLTA     L +L G   F+    K  
Sbjct: 213 VAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA--FTCLEDLSGGLQFHGQLIKTG 270

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELA 537
               +   + ++DL  + G        +    TEPDL +W  ++ G  +N   +E A
Sbjct: 271 FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDA 327


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 243/451 (53%), Gaps = 41/451 (9%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+  Y +  ++  AR + D +P  N   W  L   + ++G   EA+ ++ +M   G +
Sbjct: 317 TALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCR 376

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            NI    SVL AC  L D+  G +IH+  LK    T+ FV SSLIDMY KC     A++V
Sbjct: 377 PNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRV 436

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F+ + EK                                   N V WN+LISG+S +G  
Sbjct: 437 FNSLPEK-----------------------------------NTVCWNSLISGYSWNGKM 461

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           V    LF  M A+    + VSW ++ISG   N    +A + F  ML+ G  P   T+SS+
Sbjct: 462 VEAEGLFNKMPAR----NSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSV 517

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+  ++  G+ +H   + +G+E ++ + +AL DMYAK G +  +R +F +M E+N 
Sbjct: 518 LLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNN 577

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           +TW +M+ G A +G+ +E+I LF  M E     +  +F A+L AC H GLVE     F  
Sbjct: 578 ITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFET 637

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQ  + I P+++HY CMVD+L RAG L EA E++  +S+E D   W +LL AC  + N E
Sbjct: 638 MQ-AHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKE 696

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + E AAK L ELE ++ A  +LL+++YA+ G
Sbjct: 697 IGERAAKKLHELEKDNTAGYVLLSNMYASCG 727



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 211/476 (44%), Gaps = 75/476 (15%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G I  A+ +  G+   + ++ T ++    +  ++  A  L++  P  ++  + A+  
Sbjct: 160 VKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMIS 219

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFG 211
            + R   H++A TVF +M    ++ N+  +  V+KAC    +      +  L +K + F 
Sbjct: 220 GFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFE 279

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V +SLI +Y + G    A++VFD+M  +D+V+  A++  Y   G    A  +++ +
Sbjct: 280 KSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAM 339

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  N V+W TLI+   + GD     KL+  M A G  P++                
Sbjct: 340 PA----RNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNI---------------- 379

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
                              +  SS+L ACA+  ++R G  IH  A+ MG   +L V S+L
Sbjct: 380 -------------------SCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSL 420

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--------- 442
           +DMY KC   + A+ +F+ + E+NTV WNS+I G + +G   EA  LFN+M         
Sbjct: 421 IDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWN 480

Query: 443 -------EERKKLDHLSF----------------TAVLTACCHVGLVELGQRLFNMMQEK 479
                  E R+  D L++                ++VL AC ++  +E+G R+ +    K
Sbjct: 481 TMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMG-RMVHAEIVK 539

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             I         + D+  ++G L  +  +   M  E +   W A++     +G  E
Sbjct: 540 LGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMP-EKNNITWTAMVQGLAENGFAE 594



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 161/347 (46%), Gaps = 45/347 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA  +  G +    +++ LI  Y +C+   +A+ +F+ +P+ N   W +L   
Sbjct: 395 LRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISG 454

Query: 154 YARRGYHQEAVTVFHEMH----------IQGLKQNI---------------------FVI 182
           Y+  G   EA  +F++M           I G  +N                        +
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            SVL AC +L  +  G  +H+ ++K     + F+ ++L DMY+K G ++ +++VF +M E
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPE 574

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           K+ +   AMV G  + G A E+++L E++    + PN  T+  ++   S  G        
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHY 634

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ M+A G+ P    +T ++  L    C  EA +   ++ S+     +++ SS+L AC++
Sbjct: 635 FETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSE---LDTSSWSSLLSACST 691

Query: 363 AANM----RRGKEIHGCAIVMGVEGDLHVRSALV-DMYAKCGFISEA 404
             N     R  K++H       +E D      L+ +MYA CG   +A
Sbjct: 692 YRNKEIGERAAKKLH------ELEKDNTAGYVLLSNMYASCGKWKDA 732



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA---MNAMVSGYVQ 257
           +H+  L+    TD  V S+L+  Y+         + F + V  D  +    + MVS +V+
Sbjct: 102 LHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFMVSEHVK 161

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            G    A  L    G P  + +VV++ T++    K G      +L++    +     V  
Sbjct: 162 AGDIASARRLF--YGMP--EKSVVSYTTMVDALMKRGSVRDAVELYE----RCPLHSVAF 213

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           +T++ISG V N  + +AF  F++ML+    P   T+  ++ AC  A        + G A+
Sbjct: 214 FTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAV 273

Query: 378 VMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
              + E  + V ++L+ +Y + G  + AR +FD M  R+ V+W +++   A+ G  D A 
Sbjct: 274 KCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGAR 333

Query: 437 ELFNQMEERKKL 448
            + + M  R ++
Sbjct: 334 RVLDAMPARNEV 345


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/503 (32%), Positives = 263/503 (52%), Gaps = 35/503 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H+ +I  G A      + L+  Y +C+ +  A + F  I K N   W A+   YA+
Sbjct: 118 GQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQ 177

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  + A  +   M  +G K +      +L             ++H  ++KH       +
Sbjct: 178 AGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTM 237

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
            ++LI  YSKCGS++ AK++FD     +D+V  N++++ Y+ R     A  L+ ++    
Sbjct: 238 CNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHG 297

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE----------------------- 312
            +P++ ++ ++IS             L  L+  +G E                       
Sbjct: 298 FEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKE 357

Query: 313 ----------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                      D VSW S+++GL     +++A  +F  M S        + S++L +C+ 
Sbjct: 358 ALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSD 417

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A  + G++IH  A+  G+E +  V S+L+ MY+KCG I +AR  F++ S+ +++TWN++
Sbjct: 418 LATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNAL 477

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           +FG A HG C+ A++LF  ME +K K+DH++F AVLTAC H+GLVE G +    M+  Y 
Sbjct: 478 MFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYG 537

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + PR EHYAC VDL GR+GRL EA  +I+ M  +PD  VW   LGAC++ GNIELA   A
Sbjct: 538 VPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVA 597

Query: 542 KHLSELEPESAANNMLLTDLYAN 564
            HL E+EPE     +LL+++Y N
Sbjct: 598 GHLLEMEPEEHCTYVLLSNMYGN 620



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 219/484 (45%), Gaps = 43/484 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RAL +  + H+  +  G          ++  Y +C+ +  A +LFDE+P  +   W  + 
Sbjct: 12  RALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMI 71

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +   G  + +  V   M   G + + +   S+LK          G+++HS+++K  + 
Sbjct: 72  AGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYA 131

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL------ 265
            + +  S+L+DMY+KC  +E A   F  + + + V+ NAM++GY Q G    A       
Sbjct: 132 ENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCM 191

Query: 266 -------------------------NLVEEIGTPRVKPNVVTWNT----LISGFSKSGDQ 296
                                    NL  ++    +K  +   NT    LI+ +SK G  
Sbjct: 192 EQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSL 251

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F    + G+  D+V+W S+++  +     D AF    +M   GF P   + +SI
Sbjct: 252 DDAKRIFD--SSAGIR-DLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSI 308

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC--GFISEARTLFDKMSER 414
           + AC +      G+ +HG  I  G E  + + +AL+ MY K   G + EA  +F+ +  +
Sbjct: 309 ISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFK 368

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V+WNS++ G +  G  ++A++ F  M      +DH SF+AVL +C  +   +LGQ++ 
Sbjct: 369 DRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQI- 427

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           +++  KY +       + ++ +  + G + +A    +  S    +  W AL+     HG 
Sbjct: 428 HVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSI-TWNALMFGYAQHGQ 486

Query: 534 IELA 537
             +A
Sbjct: 487 CNVA 490



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 156/339 (46%), Gaps = 9/339 (2%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFY--TECQNIHHARMLFD 137
           +Y+  I     +    +G+ LH  +I  G  +   I+  LI+ Y  ++  ++  A  +F+
Sbjct: 304 SYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFE 363

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
            +   +   W ++    ++ G  ++AV  F  M    +  + +   +VL++C  L+    
Sbjct: 364 SLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQL 423

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G++IH L LK+   ++ FV SSLI MYSKCG +E A++ F+E  +   +  NA++ GY Q
Sbjct: 424 GQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQ 483

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVV 316
            G    AL+L   +   +VK + +T+  +++  S  G      K  + M +  GV P + 
Sbjct: 484 HGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRME 543

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
            +   +     +   +EA    +EM    F P +    + L AC S  N+    ++ G  
Sbjct: 544 HYACAVDLYGRSGRLEEAKALIEEM---PFKPDTTVWKTFLGACRSCGNIELACQVAGHL 600

Query: 377 IVMGVEGDLHVRSALV-DMYAKCGFISEARTLFDKMSER 414
           + M  E + H    L+ +MY       E   +   M ER
Sbjct: 601 LEM--EPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKER 637


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 259/468 (55%), Gaps = 43/468 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTE-CQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           +HAQLI +GLA+ T  A++++ F T    +I++A ++F +I   N+  W  +   +++  
Sbjct: 15  IHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSS 74

Query: 159 YHQEAVTVFHEMHIQG--LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               A+++F +M       +      PSV KA   L     G ++H  V+K     D F+
Sbjct: 75  TPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFI 134

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +++++MY  CG + +A+++FD              +G+                     
Sbjct: 135 QNTILNMYVNCGFLGEAQRIFDG------------ATGF--------------------- 161

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             +VVTWNT+I G +K G+     +LF  M  +    + VSW S+ISG V      EA +
Sbjct: 162 --DVVTWNTMIIGLAKCGEIDKSRRLFDKMLLR----NTVSWNSMISGYVRKGRFFEAME 215

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F  M  +G  P+  T+ S+L ACA    +R+G+ IH   +      +  V +A++DMY+
Sbjct: 216 LFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYS 275

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTA 455
           KCG I +A  +F    ++    WNS+I G A  G  +EA+ LF+++E    K DH+SF  
Sbjct: 276 KCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIG 335

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           VLTAC H G+V+  +  F +M E YKI P  +HY+CMVD+LGRAG L EA E+IK+M   
Sbjct: 336 VLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVN 395

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           PD  +WG+LL +C+ +GNIE+A+ AAK ++EL+P  +++ +LL+++YA
Sbjct: 396 PDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYA 443



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 5/289 (1%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTN 143
           I+  I +  +  G +  AQ I  G      +    +I    +C  I  +R LFD++   N
Sbjct: 134 IQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRN 193

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
              W ++   Y R+G   EA+ +F  M  +G+K + F + S+L AC  L  +  GE IH 
Sbjct: 194 TVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHD 253

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            ++K++F  ++ V++++IDMYSKCGS++KA +VF    +K +   N+++ G    G   E
Sbjct: 254 YIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNE 313

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVI 322
           A+ L  ++ +  +KP+ V++  +++  + +G        F LM     +EP +  ++ ++
Sbjct: 314 AVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMV 373

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
             L      +EA +  K M      P +    S+L +C    N+   K+
Sbjct: 374 DVLGRAGLLEEAEELIKSMPVN---PDAIIWGSLLSSCREYGNIEMAKQ 419


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/559 (31%), Positives = 281/559 (50%), Gaps = 70/559 (12%)

Query: 78  PAAYSER---IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHA 132
           P   +ER   I +  R  +L+  K  H  +I +G       A+KL      +   ++ +A
Sbjct: 24  PTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYA 83

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGH 191
           R +FDEIPK N   W  L  AYA       ++  F +M  +     N +  P ++KA   
Sbjct: 84  RKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAE 143

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           +S +  G+ +H + +K + G+D FV +SLI  Y  CG ++ A KVF  + EKD+V+ N+M
Sbjct: 144 VSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSM 203

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTW---------------------------- 283
           ++G+VQ+G   +AL L +++ +  VK + VT                             
Sbjct: 204 INGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRV 263

Query: 284 -------NTLISGFSKSGDQVMVSKLFQLMRAKG-------------------------- 310
                  N ++  ++K G      +LF  M  K                           
Sbjct: 264 NVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNS 323

Query: 311 -VEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAANMRR 368
             + D+V+W ++IS    N   +EA   F E+ L +       T+ S L ACA    +  
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           G+ IH      G+  + HV SAL+ MY+KCG + ++R +F+ + +R+   W++MI G A 
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443

Query: 429 HGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           HG  +EA+++F +M+E   K + ++FT V  AC H GLV+  + LF+ M+  Y I+P  +
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           HYAC+VD+LGR+G L +A + I+ M   P   VWGALLGACK H N+ LAE+A   L EL
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563

Query: 548 EPESAANNMLLTDLYANAG 566
           EP +   ++LL+++YA  G
Sbjct: 564 EPRNDGAHVLLSNIYAKLG 582



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 9/242 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +H+ +   G+     + + LI  Y++C ++  +R +F+ + K ++  W A+ G
Sbjct: 380 ALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIG 439

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
             A  G   EAV +F++M    +K N     +V  AC H   +   E + H +   +   
Sbjct: 440 GLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIV 499

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA-LNLVEE 270
            +    + ++D+  + G +EKA K  + M     +  +  V G +       A LNL E 
Sbjct: 500 PEEKHYACIVDVLGRSGYLEKAVKFIEAMP----IPPSTSVWGALLGACKIHANLNLAEM 555

Query: 271 IGTP--RVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
             T    ++P     + L+S  ++K G    VS+L + MR  G++ +    +  I G++H
Sbjct: 556 ACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIH 615

Query: 328 NF 329
            F
Sbjct: 616 EF 617


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 169/490 (34%), Positives = 265/490 (54%), Gaps = 53/490 (10%)

Query: 123 YTECQNIHHARMLFDE-IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
           +TE QN+     LF+  + KT++  W ++    AR G   EA+  F  M    L      
Sbjct: 22  HTERQNL---TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSS 78

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
            P  +KAC  L DI +G++ H       + +D FV S+LI MYS CG +E A+KVFDE+ 
Sbjct: 79  FPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEI-----------------------GTPRVKP 278
           ++DIV+  +M+ GY   G A +A++L +++                          RV  
Sbjct: 139 KRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPA 198

Query: 279 NVVT------------------WNTLISGFSKSGDQ--VMVSKLFQLMRAKGVEPDVVSW 318
             +T                   NTL+  ++K G+    +  K+F  +    V+ D VS+
Sbjct: 199 KGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI----VDKDRVSY 254

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA-TISSILPACASAANMRRGKEIHGCAI 377
            S++S    +  ++EAF+ F+ ++       +A T+S++L A + +  +R GK IH   I
Sbjct: 255 NSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI 314

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
            MG+E D+ V ++++DMY KCG +  AR  FD+M  +N  +W +MI G   HG+  +A+E
Sbjct: 315 RMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALE 374

Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF  M +   + ++++F +VL AC H GL   G R FN M+ ++ + P  EHY CMVDLL
Sbjct: 375 LFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLL 434

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
           GRAG L +AY++I+ M  +PD  +W +LL AC+ H N+ELAEI+   L EL+  +    M
Sbjct: 435 GRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYM 494

Query: 557 LLTDLYANAG 566
           LL+ +YA+AG
Sbjct: 495 LLSHIYADAG 504



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 178/380 (46%), Gaps = 50/380 (13%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           SGK  H Q  V G      +++ LI  Y+ C  +  AR +FDEIPK +I  W ++   Y 
Sbjct: 94  SGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYD 153

Query: 156 RRGYHQEAVTVFHEMHIQGLKQN--IFV----IPSVLKACGHLSDIGTGEKIHSLVLKHS 209
             G   +AV++F ++ +     +  +F+    + SV+ AC  +   G  E IHS V+K  
Sbjct: 154 LNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRG 213

Query: 210 FGTDAFVVSSLIDMYSKC--GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
           F     V ++L+D Y+K   G V  A+K+FD++V+KD V+ N+++S Y Q G++ EA  +
Sbjct: 214 FDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEV 273

Query: 268 VEEIGTPRVKP-NVVTWNTLISGFSKSG---------DQVM------------------- 298
              +   +V   N +T +T++   S SG         DQV+                   
Sbjct: 274 FRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYC 333

Query: 299 -------VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
                    K F  M+ K V     SWT++I+G   +    +A + F  M+  G  P   
Sbjct: 334 KCGRVETARKAFDRMKNKNVR----SWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389

Query: 352 TISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           T  S+L AC+ A     G +  +      GVE  L     +VD+  + GF+ +A  L  +
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449

Query: 411 MSER-NTVTWNSMIFGCANH 429
           M  + +++ W+S++  C  H
Sbjct: 450 MKMKPDSIIWSSLLAACRIH 469



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H Q+I  GL     + T +I  Y +C  +  AR  FD +   N+  W A+  
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIA 361

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G+  +A+ +F  M   G++ N     SVL AC H      G +  +  +K  FG 
Sbjct: 362 GYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFN-AMKGRFGV 420

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
           +  +     ++D+  + G ++KA  +   M
Sbjct: 421 EPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/594 (30%), Positives = 289/594 (48%), Gaps = 101/594 (17%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
           F    + +++ +++ ++ R+ +  + +H +LI +       I  +LI  Y +C  + +AR
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 134 MLFDEIPKTNIHR-------------------------------WIALTGAYARRGYHQE 162
            +FD + + N+                                 W ++   +A+    +E
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
           A+  F  MH      N +   S L AC  L D+  G +IH L+ K  +  D F+ S LID
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLID 199

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT 282
            YSKCG V  A++VFD M EK++V+ N +++ Y Q G A EAL     +     KP+ VT
Sbjct: 200 FYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVT 259

Query: 283 WNTLISGFS-----KSGDQV----------------------MVSKLFQLMRAKGVEP-- 313
             +++S  +     K G Q+                      M +K  ++  A+ V    
Sbjct: 260 LASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRM 319

Query: 314 ---DVVSWTSVISG-------------------------------LVHNFCNDEAFDTFK 339
              + VS T+++SG                                  N  N+EA   F+
Sbjct: 320 PVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFR 379

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEI------HGCAIVMGVEGDLHVRSALVD 393
            +  +  CPT  T  ++L A A+ A++  G++       HG     G E D+ V ++L+D
Sbjct: 380 MLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLID 439

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           MY KCG + E   +F+ M E++ V+WN+MI G A +GY  EA+ELF +M E  +K DH++
Sbjct: 440 MYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVT 499

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
               L AC H GLVE G+R F  M +++ ++P  +HY CMVDLLGRAG L EA ++I++M
Sbjct: 500 MIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESM 559

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +PD  VW +LL ACK H NI L +  A+ + E++P S+   +LL ++Y+  G
Sbjct: 560 PKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELG 613


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/491 (34%), Positives = 266/491 (54%), Gaps = 44/491 (8%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           +Y  R+++  + +A  + K +HAQ++ SGL +   +   L+  Y +C  +  A  LFDE+
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM 63

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTG 198
           P+ +   W ++  AY +     + +++FH M     L+ + FV  ++LKAC  L  +  G
Sbjct: 64  PQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG 123

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +++H+  +   F  D  V SSL+DMY+KCG    A+ VFD ++ K               
Sbjct: 124 KQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVK--------------- 168

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                 V+W  ++SG+++SG +    +LF     +    ++ SW
Sbjct: 169 --------------------TSVSWTAMLSGYARSGLKDEAMELFLRTPVR----NLYSW 204

Query: 319 TSVISGLVHN-FCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCA 376
           T++ISGLV + +C D  +  F EM  +G        +SS++ ACA+ A +  GK+IHG  
Sbjct: 205 TALISGLVQSGYCIDGCY-MFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLV 263

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           I  G E  L + +ALVDMYAKC  I  AR +F++M  R+ V+W S+I G A HG   EA+
Sbjct: 264 IGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEAL 323

Query: 437 ELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
           +L++QM   + K + ++F  ++ AC H GLV  G++LF  M E Y+I P  + + C +DL
Sbjct: 324 DLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDL 383

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           L R+G L EA ++IKTM  +PD   W ALL ACK+HGN E+    A  L  L     +  
Sbjct: 384 LSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTY 443

Query: 556 MLLTDLYANAG 566
           +LL+++YA AG
Sbjct: 444 VLLSNVYAGAG 454


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/490 (33%), Positives = 269/490 (54%), Gaps = 45/490 (9%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + +  I+ Y E   +   R +FD   + +   W  + G + +     E V +F    +Q 
Sbjct: 139 VVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLF----LQA 194

Query: 175 LKQNIFVIPSV-----LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           +K    ++  V     L A   L  +G G+++H+  +K+       V+++++ MYS+C S
Sbjct: 195 MKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNS 254

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
           V+ + +VF++M EKD+V+ N M+SG++Q GL  E L LV E+       + VT  +L+S 
Sbjct: 255 VQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSA 314

Query: 290 FS-----KSGDQV-------------MVSKLFQLMRAKGV--------------EPDVVS 317
            S     + G Q              M S L  +    G+                D  +
Sbjct: 315 ASNLRNREIGKQTHAYLIRHGIKFDGMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQAT 374

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W +VI+G   N   ++AF TF+ ML Q   P + T++SILPAC+S  ++  GK++HG +I
Sbjct: 375 WNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSI 434

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
              ++ ++ VR+ALVDMY+K G I+ A ++F + SERN+VT+ +MI G   HG  + A+ 
Sbjct: 435 RYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALS 494

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF+ M++   + D ++F AVL+AC + GLV+ G R+F  M+  +KI P T HY C+ D+L
Sbjct: 495 LFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADML 554

Query: 497 GRAGRLAEAYEMIKTMSTEPDLF-VWGALLGACKNHGNIELAEIAAKHLSELEPES--AA 553
           GR GR+ EAYE +K +  E  +  +WG+LLGAC+ HG+IEL E  +  L E+      A 
Sbjct: 555 GRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLLEMNSVDRLAG 614

Query: 554 NNMLLTDLYA 563
             +LL+++YA
Sbjct: 615 YQVLLSNMYA 624



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 204/435 (46%), Gaps = 40/435 (9%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +F  + K ++  W  +   Y +   + EA+  F  M   G+K +     +V  A   + D
Sbjct: 56  VFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGD 115

Query: 195 IGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
                 ++ ++LK  + +  D FVVSS I MY++ G ++  +KVFD  +EK     N M+
Sbjct: 116 FKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMI 175

Query: 253 SGYVQRGLATEALNL-VEEIGTPRVKPNVVTWNTLISGFSK-----SGDQ---------- 296
            G++Q     E + L ++ + T     + VT+ + ++  S+      G Q          
Sbjct: 176 GGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHT 235

Query: 297 -----VMVSKLFQLMRAKGV-----------EPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
                V+ + L    R   V           E DVVSW ++ISG + N  ++E      E
Sbjct: 236 VLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYE 295

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M  QGF   S T++S+L A ++  N   GK+ H   I  G++ D  + S L+DMYAK G 
Sbjct: 296 MQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFD-GMDSYLIDMYAKSGL 354

Query: 401 ISEARTLF--DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVL 457
           I  ++ +F  + +  R+  TWN++I G   +G  ++A   F  M E+  + + ++  ++L
Sbjct: 355 IRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASIL 414

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            AC  +G + LG++L   +  +Y +         +VD+  ++G +  A E + T S+E +
Sbjct: 415 PACSSLGSINLGKQLHG-VSIRYSLDQNIFVRTALVDMYSKSGAINYA-ESVFTQSSERN 472

Query: 518 LFVWGALLGACKNHG 532
              +  ++     HG
Sbjct: 473 SVTYTTMILGYGQHG 487



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 179/402 (44%), Gaps = 47/402 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HA  + +       +   ++  Y+ C ++  +  +F+++P+ ++  W  +   + +
Sbjct: 223 GQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQ 282

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  +E + + +EM  QG   +   + S+L A  +L +   G++ H+ +++H    D  +
Sbjct: 283 NGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDG-M 341

Query: 217 VSSLIDMYSKCGSVEKAKKVF--DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            S LIDMY+K G +  +++VF  + +  +D    NA+++GY Q GL  +A      +   
Sbjct: 342 DSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQ 401

Query: 275 RVKPNVVTWNTLISGFSKSG-----------------DQV---------MVSKLFQLMRA 308
            ++PN VT  +++   S  G                 DQ          M SK   +  A
Sbjct: 402 NLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYA 461

Query: 309 KGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           + V     E + V++T++I G   +   + A   F  M   G  P + T  ++L AC+ A
Sbjct: 462 ESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYA 521

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSA------LVDMYAKCGFISEARTLFDKMSERNTV 417
                G    G  I   ++ D  ++ +      + DM  + G + EA     ++ E   V
Sbjct: 522 -----GLVDEGLRIFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHV 576

Query: 418 --TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457
              W S++  C  HG+ +   E+ N++ E   +D L+   VL
Sbjct: 577 IEIWGSLLGACRLHGHIELGEEVSNRLLEMNSVDRLAGYQVL 618



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 156/330 (47%), Gaps = 9/330 (2%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE--IPKTNIHR 146
           +R+R +  GK  HA LI  G+ +   + + LI  Y +   I  ++ +F+   I   +   
Sbjct: 318 LRNREI--GKQTHAYLIRHGI-KFDGMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQAT 374

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W A+   Y + G  ++A   F  M  Q L+ N   + S+L AC  L  I  G+++H + +
Sbjct: 375 WNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSI 434

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           ++S   + FV ++L+DMYSK G++  A+ VF +  E++ V    M+ GY Q G+   AL+
Sbjct: 435 RYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALS 494

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGL 325
           L   +    ++P+ +T+  ++S  S +G      ++F+ M R   ++P    +  V   L
Sbjct: 495 LFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADML 554

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  EA++  K++  +G         S+L AC    ++  G+E+    + M     L
Sbjct: 555 GRVGRVIEAYEFVKQLGEEGHVI--EIWGSLLGACRLHGHIELGEEVSNRLLEMNSVDRL 612

Query: 386 HVRSALV-DMYAKCGFISEARTLFDKMSER 414
                L+ +MYA+         L   M E+
Sbjct: 613 AGYQVLLSNMYAEEANWETVDKLRKSMREK 642



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 116/239 (48%), Gaps = 10/239 (4%)

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           ++ K+F+ M  +    DV++W +++S  V      EA   F+ M+  G  P+  +  ++ 
Sbjct: 52  LLHKVFKTMHKR----DVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVF 107

Query: 358 PACASAANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           PA +S  + +    ++G  + +G E   DL V S+ + MYA+ G +   R +FD   E++
Sbjct: 108 PAISSVGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKS 167

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
              WN+MI G   +    E + LF Q    E   LD ++F + LTA   +  + LGQ++ 
Sbjct: 168 AEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMH 227

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
               + + ++  T   A +V +  R   +  ++E+ + M  E D+  W  ++     +G
Sbjct: 228 AFTMKNHTVLSVTVLNAILV-MYSRCNSVQTSFEVFEKMP-EKDVVSWNTMISGFIQNG 284



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 156/355 (43%), Gaps = 40/355 (11%)

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           KVF  M ++D++A N MVS YV+     EA+     +    +KP+ V++  +    S  G
Sbjct: 55  KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVG 114

Query: 295 D----QVMVSKLFQLMRAKGVEPDVVS-----------------------------WTSV 321
           D     V+   L +L      +  VVS                             W ++
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 322 ISGLVHNFCNDEAFDTF-KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           I G + N    E    F + M ++       T  S L A +    +  G+++H   +   
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNH 234

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
               + V +A++ MY++C  +  +  +F+KM E++ V+WN+MI G   +G  +E + L  
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVY 294

Query: 441 QMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M+++  + D ++ T++L+A  ++   E+G++    +          + Y  ++D+  ++
Sbjct: 295 EMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMDSY--LIDMYAKS 352

Query: 500 GRLAEAYEMIKTMSTEP-DLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPES 551
           G +  +  + +  + +  D   W A++     +G +E A I  + + E  L P +
Sbjct: 353 GLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNA 407


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 273/485 (56%), Gaps = 16/485 (3%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF-------DEIPKTNI 144
            A++ GK  HA +I+ G      + + ++ FY++   I    ++F       DE+     
Sbjct: 327 EAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDEV----- 381

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
             W  +  +Y + G  ++A+ + H M   + L+ +   + S+L       D+  G+K+H 
Sbjct: 382 -TWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHG 440

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD-EMVEKDIVAMNAMVSGYVQRGLAT 262
             +++ F +D  V+S ++DMY+KCG ++ A+ VF     +KDIV  N M++   ++GL+ 
Sbjct: 441 FCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKGLSG 500

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
           EAL L  ++    V PNVV+WN+LI GF ++G  V    +F  M+  GV P++++WT++I
Sbjct: 501 EALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITWTTMI 560

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           SGL  N    EA   F++M   G  P S +I+S L AC + A +  G+ IHG  +   + 
Sbjct: 561 SGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVMRNFMS 620

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
             L + ++++DMYAKCG + +A+ +F   S +    +N+MI   A+HG   EA+ LF ++
Sbjct: 621 FSLQITTSIIDMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALFQEL 680

Query: 443 EERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
            ++  + DH++FT+VL+AC H  L++ G  LF  M  + ++ P  +HY C+V LL   G+
Sbjct: 681 VKQGIMPDHITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTNDGQ 740

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L EA  +I TM + PD  + G+LL AC  +   ELA   AK L ++EP +  N + L+++
Sbjct: 741 LDEALRIILTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKVEPNNPGNYVALSNV 800

Query: 562 YANAG 566
           YA  G
Sbjct: 801 YAALG 805



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 238/504 (47%), Gaps = 53/504 (10%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHAR 133
           + P  Y E ++  +  R L  G  +HA LI  G +  T   + +KL+  Y +C     A 
Sbjct: 101 IGPDIYGELLQGCVYARDLSLGLQIHAHLIKKGSSYSTNEFVESKLVILYAKCNLTRVAV 160

Query: 134 MLFDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
             F  + K  N+  + A+ G  AR G ++EA+  + EM  +G   + FV+P+ LKACG L
Sbjct: 161 HFFRNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKACGGL 220

Query: 193 SDIGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAM 248
             IG G  IH  V+K  + F    +V +SL+DMY KCG +E A+KVFDEM   +++ V  
Sbjct: 221 RWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVW 280

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF------------SKSGDQ 296
           N+M+ GYVQ G+  EA+ L E++   R +  V      +SGF             K G  
Sbjct: 281 NSMIVGYVQNGMNVEAVGLFEKM---RFEGGVEPSEVSLSGFFSACANLEAVEEGKQGHA 337

Query: 297 VMVSKLFQL------------------------MRAKGVEPDVVSWTSVISGLVHNFCND 332
           +++   F+L                         R+  V  D V+W  +IS  V     +
Sbjct: 338 LVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFE 397

Query: 333 EAFDTFKEML-SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +A +    M   +       T+SS+L   A   +++ GK++HG  I      D+ V S +
Sbjct: 398 KALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSGV 457

Query: 392 VDMYAKCGFISEARTLFD-KMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLD 449
           +DMYAKCG +  AR +F     +++ V WN+M+  CA  G   EA++LF QM+ E    +
Sbjct: 458 LDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKGLSGEALKLFFQMQMESVPPN 517

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            +S+ +++      G V   Q +F+ MQ    + P    +  M+  L + G   EA  + 
Sbjct: 518 VVSWNSLIFGFFRNGQVVEAQDMFSEMQLS-GVTPNLITWTTMISGLAQNGLGYEASRVF 576

Query: 510 KTM---STEPDLFVWGALLGACKN 530
           + M      P+     + L AC N
Sbjct: 577 QQMQGAGMRPNSISITSALSACTN 600



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 211/431 (48%), Gaps = 21/431 (4%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIP--KTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
           +AT L+  Y +C  +  A  +FDE+P  K N   W ++   Y + G + EAV +F +M  
Sbjct: 246 VATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRF 305

Query: 173 QG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
           +G ++ +   +     AC +L  +  G++ H+LV+   F  +  + SS+++ YSK G +E
Sbjct: 306 EGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIE 365

Query: 232 KAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEI-GTPRVKPNVVTWNTLISG 289
           + + VF  M V KD V  N M+S YVQ G+  +AL +   +     ++ + VT ++L++ 
Sbjct: 366 EVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLAL 425

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
            + + D     KL + +    +  +  S  +V+SG++  +      D  + +    F   
Sbjct: 426 AADTRD----VKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFH--FAGK 479

Query: 350 SATI---SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
              I   +++L ACA         ++     +  V  ++   ++L+  + + G + EA+ 
Sbjct: 480 KKDIVLWNTMLAACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQD 539

Query: 407 LFDKMS----ERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACC 461
           +F +M       N +TW +MI G A +G   EA  +F QM+    + + +S T+ L+AC 
Sbjct: 540 MFSEMQLSGVTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACT 599

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
           ++ L+  G+ +   +   +      +    ++D+  + G L +A  +    ST+ +L V+
Sbjct: 600 NMALLNYGRSIHGYVMRNFMSF-SLQITTSIIDMYAKCGNLDDAKFVFIICSTK-ELPVY 657

Query: 522 GALLGACKNHG 532
            A++ A  +HG
Sbjct: 658 NAMISAYASHG 668



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 203/445 (45%), Gaps = 59/445 (13%)

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSV----LKACGHLSDIGTGEKIHSLVLKH--SFGTDA 214
           QEA++   +     L Q+  + P +    L+ C +  D+  G +IH+ ++K   S+ T+ 
Sbjct: 86  QEAISTLSQ-----LPQHTPIGPDIYGELLQGCVYARDLSLGLQIHAHLIKKGSSYSTNE 140

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEAL-NLVEEIG 272
           FV S L+ +Y+KC     A   F  +V+ +++ +  A+V    + GL  EAL + VE + 
Sbjct: 141 FVESKLVILYAKCNLTRVAVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEMME 200

Query: 273 TPRVKPNVVTWNTL--------------ISGFS-KSGDQV-----MVSKLFQLMRAKGVE 312
                 N V  N L              I GF  K G++      + + L  +    GV 
Sbjct: 201 KGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVL 260

Query: 313 PDV--------------VSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSIL 357
            D               V W S+I G V N  N EA   F++M    G  P+  ++S   
Sbjct: 261 EDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGFF 320

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNT 416
            ACA+   +  GK+ H   I+MG E +  + S++++ Y+K G I E   +F  M+  ++ 
Sbjct: 321 SACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDE 380

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRL-- 472
           VTWN MI      G  ++A+E+ + M  EE  + D ++ +++L        V+LG++L  
Sbjct: 381 VTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHG 440

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F +  E Y  M      + ++D+  + G +  A  +      + D+ +W  +L AC   G
Sbjct: 441 FCIRNEFYSDMAV---LSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKG 497

Query: 533 NIELAEIAAKHLSELEPESAANNML 557
              L+  A K   +++ ES   N++
Sbjct: 498 ---LSGEALKLFFQMQMESVPPNVV 519



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 10/222 (4%)

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI-SSILPACASAANMRRGKEIHGCAIVMG 380
           IS L  N    EA  T  ++      P    I   +L  C  A ++  G +IH   I  G
Sbjct: 76  ISFLCKNLKLQEAISTLSQLPQH--TPIGPDIYGELLQGCVYARDLSLGLQIHAHLIKKG 133

Query: 381 --VEGDLHVRSALVDMYAKCGFISEARTLF-DKMSERNTVTWNSMIFGCANHGYCDEAIE 437
                +  V S LV +YAKC     A   F + +  +N  ++ +++   A +G   EA+ 
Sbjct: 134 SSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALL 193

Query: 438 LFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC-MVDL 495
            + +M E+    D+      L AC  +  +  G+ +   + +         + A  +VD+
Sbjct: 194 SYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDM 253

Query: 496 LGRAGRLAEAYEMIKTMSTEP-DLFVWGALL-GACKNHGNIE 535
            G+ G L +A ++   M     +  VW +++ G  +N  N+E
Sbjct: 254 YGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVE 295


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 252/479 (52%), Gaps = 45/479 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTE--CQNIHHARMLFDEIPKTNIHRWIALT 151
           L   K +H  ++  GL +   I TKLI   T+       + R + + +   N   W A+ 
Sbjct: 63  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVI 122

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G   EA+ ++  M  + +    F   ++LKACG + D+  G + H+   +    
Sbjct: 123 RGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF 182

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
              +V +++IDMY KCGS+  A+KVFDEM E+D                           
Sbjct: 183 CFVYVGNTMIDMYVKCGSIVCARKVFDEMPERD--------------------------- 215

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                   V++W  LI+ +++ G+    + LF+ +  K    D+V+WT++++G   N   
Sbjct: 216 --------VISWTELIAAYARVGNMESAADLFESLPTK----DMVAWTAMVTGFAQNAKP 263

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV--RS 389
            EA + F  M   G      T++  + ACA     +        A   G     HV   S
Sbjct: 264 QEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGS 323

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK--K 447
           AL+DMY+KCG + EA  +F  M+ +N  +++SMI G A HG   EA++LF+ M  +   K
Sbjct: 324 ALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIK 383

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            + ++F   LTAC H GLV+ G+++F  M + + + P  +HY CMVDLLGRAGRL EA E
Sbjct: 384 PNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALE 443

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +IKTMS EP   VWGALLGAC+ H N ++AEIAA+HL ELEP+   N +LL+++Y++AG
Sbjct: 444 LIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAG 502



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 11/211 (5%)

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           N+    TF E+  Q        +SS++       N+ + K+IHG  +  G++   ++ + 
Sbjct: 32  NNNNSSTFSEISHQ----RELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTK 87

Query: 391 LVDMYAKCGFISE--ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           L+    K G   +   R + + +  RN   W ++I G    G  DEAI ++  M  ++++
Sbjct: 88  LIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCM-RKEEI 146

Query: 449 DHLSFT--AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
             +SFT  A+L AC  +G + LG R F+    + +          M+D+  + G +  A 
Sbjct: 147 TPVSFTFSALLKACGSMGDLNLG-RQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCAR 205

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++   M  E D+  W  L+ A    GN+E A
Sbjct: 206 KVFDEMP-ERDVISWTELIAAYARVGNMESA 235


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/505 (32%), Positives = 280/505 (55%), Gaps = 34/505 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R LQ    +H  ++ +GL +   ++  LI  Y +C N+  AR+LFD+    ++  W ++ 
Sbjct: 212 RGLQ----VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA  G   EA+ +F+ M +  ++ +     SV+K C +L ++   E++H  V+K+ F 
Sbjct: 268 SGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFL 327

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            D  + ++L+  YSKC ++  A ++F E+    ++V+  AM+SG++Q     EA++L  E
Sbjct: 328 FDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSE 387

Query: 271 IGTPRVKPNVVTWNTLISGF-----SKSGDQVMVS-----------------KLFQLMRA 308
           +    V+PN  T++ +++       S+   QV+ +                 KL ++  A
Sbjct: 388 MKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447

Query: 309 KGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             V     + D+V+W+++++G       + A   F E+   G  P   T SSIL  CA+ 
Sbjct: 448 AKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAAT 507

Query: 364 -ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A+M +GK+ HG AI   ++  L V SAL+ MYAK G I  A  +F +  E++ V+WNSM
Sbjct: 508 NASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 567

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A HG   +A+++F +M++RK K+D ++F  V  AC H GLVE G++ F++M    K
Sbjct: 568 ISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK 627

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  EH +CMVDL  RAG+L +A ++I+ M       +W  +L AC+ H   EL  +AA
Sbjct: 628 IAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 687

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           + +  ++PE +A  +LL+++YA +G
Sbjct: 688 EKIIAMKPEDSAAYVLLSNMYAESG 712



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 216/470 (45%), Gaps = 40/470 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ LH Q I  G      + T L+  Y +  N    R +FDE+ + N+  W  L   YAR
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              + E +T+F  M  +G + N F   + L         G G ++H++V+K+       V
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----------- 265
            +SLI++Y KCG+V KA+ +FD+   K +V  N+M+SGY   GL  EAL           
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 266 ---------------NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK------LFQ 304
                          NL E   T ++  +VV +  L     ++   V  SK        +
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           L +  G   +VVSWT++ISG + N   +EA D F EM  +G  P   T S IL A    +
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
                 E+H   +    E    V +AL+D Y K G + EA  +F  + +++ V W++M+ 
Sbjct: 412 P----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ-RLFNMMQEKYKI 482
           G A  G  + AI++F ++ +   K +  +F+++L  C       +GQ + F+    K ++
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN-ASMGQGKQFHGFAIKSRL 526

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                  + ++ +  + G +  A E+ K    E DL  W +++     HG
Sbjct: 527 DSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQHG 575



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 206/446 (46%), Gaps = 47/446 (10%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +++A  LFD+ P  +   +I+L   ++R G  QEA  +F  +H  G++ +  +  SVLK 
Sbjct: 43  LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
              L D   G ++H   +K  F  D  V +SL+D Y K  + +  +KVFDEM E+++V  
Sbjct: 103 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------- 283
             ++SGY +  +  E L L   +     +PN  T+                         
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222

Query: 284 ----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                     N+LI+ + K G+      LF     K     VV+W S+ISG   N  + E
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS----VVTWNSMISGYAANGLDLE 278

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   F  M       + ++ +S++  CA+   +R  +++H   +  G   D ++R+AL+ 
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338

Query: 394 MYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
            Y+KC  + +A  LF ++    N V+W +MI G   +   +EA++LF++M+ +  + +  
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +++ +LTA   +   E+  ++     E+   +        ++D   + G++ EA ++   
Sbjct: 399 TYSVILTALPVISPSEVHAQVVKTNYERSSTVG-----TALLDAYVKLGKVEEAAKVFSG 453

Query: 512 MSTEPDLFVWGALLGACKNHGNIELA 537
           +  + D+  W A+L      G  E A
Sbjct: 454 ID-DKDIVAWSAMLAGYAQTGETEAA 478



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 192/419 (45%), Gaps = 60/419 (14%)

Query: 57  NGIFIEA---HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLT 113
           NG+ +EA    Y M +      LS ++++  I++    + L+  + LH  ++  G     
Sbjct: 273 NGLDLEALGMFYSMRL--NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQ 330

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
            I T L+  Y++C  +  A  LF EI    N+  W A+   + +    +EAV +F EM  
Sbjct: 331 NIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR 390

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
           +G++ N F    +L A   +S      ++H+ V+K ++   + V ++L+D Y K G VE+
Sbjct: 391 KGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEE 446

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT------- 285
           A KVF  + +KDIVA +AM++GY Q G    A+ +  E+    +KPN  T+++       
Sbjct: 447 AAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA 506

Query: 286 -----------------------------LISGFSKSGDQVMVSKLFQLMRAKGVEPDVV 316
                                        L++ ++K G+     ++F+  R    E D+V
Sbjct: 507 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR----EKDLV 562

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE----- 371
           SW S+ISG   +    +A D FKEM  +       T   +  AC  A  +  G++     
Sbjct: 563 SWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIM 622

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSMIFGCANH 429
           +  C I    E +    S +VD+Y++ G + +A  + + M +   +  W +++  C  H
Sbjct: 623 VRDCKIAPTKEHN----SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVH 677



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 2/231 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ++  GK  H   I S L     +++ L+T Y +  NI  A  +F    + ++  W ++  
Sbjct: 510 SMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMIS 569

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFG 211
            YA+ G   +A+ VF EM  + +K +      V  AC H   +  GEK   ++++     
Sbjct: 570 GYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIA 629

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
                 S ++D+YS+ G +EKA KV + M       +   +    +    TE   L  E 
Sbjct: 630 PTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEK 689

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
                  +   +  L + +++SGD    +K+ +LM  + V+ +   SW  V
Sbjct: 690 IIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 740


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 262/489 (53%), Gaps = 54/489 (11%)

Query: 123 YTECQNIHHARMLF-DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
           Y++C  ++ A  +F D   + N+  + A+   +   G+ +E    + +M  +G+  + F 
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
            P  +KAC  + +I   +KIH L+ K     D F+ S+L++ Y K G +E A+  F+E+ 
Sbjct: 62  FPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 118

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD------ 295
            +D+V  NAMV+GY Q G     L     +    V P+  T   ++S F+  GD      
Sbjct: 119 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRI 178

Query: 296 ------------QVMVS-----------------KLFQLMRAKGVEPDVVSWTSVISGLV 326
                        V VS                 ++F++MR    E D+ SW S+ S  V
Sbjct: 179 IHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMR----EKDIFSWNSIXS--V 232

Query: 327 HNFCNDE--AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV--MGVE 382
           H  C D          ML  G  P   T++++LPAC+  A +  G+EIHG  IV  +G +
Sbjct: 233 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKD 292

Query: 383 G----DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           G    D+ +++A++DMYAKCG + +A  +F++M  ++  +WN MI G   HGY +EA+E+
Sbjct: 293 GKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEM 352

Query: 439 FNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F++M E + K D ++F  VL+AC H G V  G+     M+ KY + P  EHY C++D+LG
Sbjct: 353 FSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLG 412

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           RAG+L EAYE+  TM  E +  VW ALL AC+ H +  LAE+AA+ + ELEPE   + +L
Sbjct: 413 RAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVL 472

Query: 558 LTDLYANAG 566
           ++++Y   G
Sbjct: 473 MSNVYGAVG 481



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 39/371 (10%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H  L   GL     I + L+  Y +   + HA++ F+E+P  ++  W A+   YA+ 
Sbjct: 76  KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 135

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G  +  +  F  M+ + +  + F +  +L     + D+  G  IH   +K  + +   V 
Sbjct: 136 GQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 195

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           +SLIDMY KC  +E A ++F+ M EKDI + N++ S + Q G     L L++ +    ++
Sbjct: 196 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQ 255

Query: 278 PNVVTWNT---------------------LISGFSKSG---DQVMVSKLFQLMRAKG--- 310
           P++VT  T                     ++SG  K G   D V++      M AK    
Sbjct: 256 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 315

Query: 311 ----------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                        DV SW  +I G   +   +EA + F  M      P   T   +L AC
Sbjct: 316 RDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSAC 375

Query: 361 ASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
           + A  + +G+  +        V   +   + ++DM  + G + EA  L   M  E N V 
Sbjct: 376 SHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVV 435

Query: 419 WNSMIFGCANH 429
           W +++  C  H
Sbjct: 436 WRALLAACRLH 446



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 7/250 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+I+H   +  G      ++  LI  Y +C+ I  A  +F+ + + +I  W ++   
Sbjct: 173 LNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSV 232

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + + G H   + +   M   G++ ++  + +VL AC HL+ +  G +IH  ++    G D
Sbjct: 233 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKD 292

Query: 214 A------FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                   + +++IDMY+KCGS+  A  VF+ M  KD+ + N M+ GY   G   EAL +
Sbjct: 293 GKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEM 352

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLV 326
              +   ++KP+ VT+  ++S  S +G           M++K  V P +  +T VI  L 
Sbjct: 353 FSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLG 412

Query: 327 HNFCNDEAFD 336
                DEA++
Sbjct: 413 RAGQLDEAYE 422



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 155/348 (44%), Gaps = 42/348 (12%)

Query: 223 MYSKCGSVEKAKKVF-DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281
           MYSKC  +  A  +F D   E ++ A NA++SG++  G   E     +++    V P+  
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 282 TW----------------NTLISGFSKSGDQVMVSKL------FQLMRAKGVE------P 313
           T+                + L+  F    D  + S L      F LM    V        
Sbjct: 61  TFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR 120

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           DVV W ++++G       +   +TF+ M  +   P+  T++ IL   A   ++  G+ IH
Sbjct: 121 DVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIH 180

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF---GCANHG 430
           G A+ MG +  + V ++L+DMY KC  I +A  +F+ M E++  +WNS+      C +H 
Sbjct: 181 GFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDH- 239

Query: 431 YCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM-----QEKYKIMP 484
             D  + L ++M     + D ++ T VL AC H+  +  G+ +   M      +  K + 
Sbjct: 240 --DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDID 297

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                  ++D+  + G + +A+ + + M  + D+  W  ++     HG
Sbjct: 298 DVLLKNAVIDMYAKCGSMRDAHLVFERMXNK-DVASWNIMIMGYGMHG 344


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 279/547 (51%), Gaps = 81/547 (14%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITF---YTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           S + +HAQ+I +GL       +KL+ F           +A  +FD I + N+  W  +  
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A       A+ ++  M   GL  + +  P +LK+C        G++IH  VLK  F  
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFD-------------------------------EMV 241
           D +V +SLI MY++ G +E A+KVFD                               E+ 
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGT-PRVKPN--------------------- 279
            KD+V+ NAM+SGYV+ G   EAL L +E+     V+P+                     
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 280 -VVTW-------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            V +W             N LI  +SK G+     +LF  +  K    DV+SW ++I G 
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNK----DVISWNTLIGGY 298

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
            H     EA   F+EML  G  P   T+ SILPACA    +  G+ IH   I   ++G +
Sbjct: 299 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH-VYINKKLKGVV 357

Query: 386 ----HVRSALVDMYAKCGFISEARTLFDK-MSERNTVTWNSMIFGCANHGYCDEAIELFN 440
                ++++L+DMYAKCG I  A+ +FD  MS R+  TWN+MI G A HG  + A ++F+
Sbjct: 358 TNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFS 417

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M     + D ++F  +L+AC H G+++LG+ +F  M   Y+I P+ EHY CM+DLLG +
Sbjct: 418 RMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHS 477

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G   EA EMI TM  EPD  +W +LL ACK HGN+EL E  AK L ++EP ++ + +LL+
Sbjct: 478 GLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLS 537

Query: 560 DLYANAG 566
           ++YA AG
Sbjct: 538 NIYAAAG 544



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 181/440 (41%), Gaps = 79/440 (17%)

Query: 66  KMPIISRSFHLSPAAYSER--IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFY 123
           K+ ++  S  L P +Y+    ++   + +  + G+ +H  ++  G      + T LI+ Y
Sbjct: 75  KLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMY 134

Query: 124 TECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY------------------------ 159
            +   +  AR +FD     ++  + AL   Y  RGY                        
Sbjct: 135 AQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMIS 194

Query: 160 -------HQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
                  ++EA+ +F EM +   ++ +   + +V+ AC     I  G  +HS +  H F 
Sbjct: 195 GYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFA 254

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  +V++LID+YSK G VE A ++FD +  KD+++ N ++ GY    L  EAL L +E+
Sbjct: 255 SNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEM 314

Query: 272 GTPRVKPNVVT------------------W--------------------NTLISGFSKS 293
                 PN VT                  W                     +LI  ++K 
Sbjct: 315 LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKC 374

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD   +    Q+  +      + +W ++ISG   +   + AFD F  M   G  P   T 
Sbjct: 375 GD---IDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITF 431

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKM 411
             +L AC+ +  +  G+ I   ++  G E    L     ++D+    G   EA  + + M
Sbjct: 432 VGLLSACSHSGMLDLGRNIFR-SMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTM 490

Query: 412 S-ERNTVTWNSMIFGCANHG 430
             E + V W S++  C  HG
Sbjct: 491 PMEPDGVIWCSLLKACKIHG 510



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 135/283 (47%), Gaps = 8/283 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++ G+ +H+ +   G A   +I   LI  Y++   +  A  LFD +   ++  W  L G
Sbjct: 237 SIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIG 296

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y     ++EA+ +F EM   G   N   + S+L AC HL  I  G  IH  + K   G 
Sbjct: 297 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGV 356

Query: 213 DAFVVS---SLIDMYSKCGSVEKAKKVFD-EMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
              V S   SLIDMY+KCG ++ A++VFD  M  + +   NAM+SG+   G A  A ++ 
Sbjct: 357 VTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIF 416

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVH 327
             +    ++P+ +T+  L+S  S SG   +   +F+ M R   + P +  +  +I  L H
Sbjct: 417 SRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGH 476

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           +    EA +    M  +   P      S+L AC    N+  G+
Sbjct: 477 SGLFKEAEEMINTMPME---PDGVIWCSLLKACKIHGNLELGE 516


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 166/511 (32%), Positives = 269/511 (52%), Gaps = 40/511 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +++G+ +HA ++  G  +    A  L+  Y +   +  A ++F+++P +++  W AL 
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
                 G+   A+ +  +M   GL  N+F + S+LKAC        G +IH  ++K +  
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANAD 335

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D ++   L+DMY+K   ++ A+KVFD M  +D++  NA++SG    G   EAL+L  E+
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
               +  N  T                                    N LI  + K    
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              +++F+    +    D+++ TS+I+ L      + A   F EML +G  P    +SS+
Sbjct: 456 SDANRVFE----ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL 511

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACAS +   +GK++H   I      D    +ALV  YAKCG I +A   F  + ER  
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+W++MI G A HG+   A+ELF +M +E    +H++ T+VL AC H GLV+  +R FN 
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNS 631

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M+E + I    EHY+CM+DLLGRAG+L +A E++ +M  + +  +WGALLGA + H + E
Sbjct: 632 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPE 691

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L ++AA+ L  LEPE +  ++LL + YA+AG
Sbjct: 692 LGKLAAEKLFILEPEKSGTHVLLANTYASAG 722



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 210/420 (50%), Gaps = 46/420 (10%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           S    S+++  Y   +AL  G  LHA L+ SG   L      LI+FY++C+    AR  F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFF 60

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           DEIP      W +L  AY+  G  + A+  FH M  +G+  N F +P VLK    + D  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAR 117

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGY 255
            G ++H++ +   FG+D FV ++L+ MY   G ++ A++VF+E   E++ V+ N ++S Y
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 256 VQRGLATEALNLVEEIGTPRVKP-----------------------------------NV 280
           V+     +A+ +  E+    ++P                                   +V
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDV 237

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
            T N L+  + K G   + S +F+ M     + DVVSW ++ISG V N  +  A +   +
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMP----DSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M   G  P   T+SSIL AC+ A     G++IHG  I    + D ++   LVDMYAK  F
Sbjct: 294 MKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTA 459
           + +AR +FD M  R+ +  N++I GC++ G  DEA+ LF ++ +E   ++  +  AVL +
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 217/471 (46%), Gaps = 37/471 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYA 155
           G  +HA  + +G      +A  L+  Y     +  AR +F+E   + N   W  L  AY 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +     +A+ VF EM   G++   F    V+ AC    +I  G ++H++V++  +  D F
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVF 238

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             ++L+DMY K G V+ A  +F++M + D+V+ NA++SG V  G    A+ L+ ++    
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--------------------- 314
           + PNV T ++++   S +G   +  ++   M     + D                     
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 315 -VVSW---------TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            V  W          ++ISG  H   +DEA   F E+  +G      T++++L + AS  
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
                +++H  A+ +G   D HV + L+D Y KC  +S+A  +F++ S  + +   SMI 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 425 GCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
             +   + + AI+LF +M  RK L  D    +++L AC  +   E G+++   +  K + 
Sbjct: 479 ALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI-KRQF 536

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           M        +V    + G + +A E+  +   E  +  W A++G    HG+
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGH 586



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 169/370 (45%), Gaps = 44/370 (11%)

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G  +H+ +LK   G+ A   + LI  YSKC     A++ FDE+ +   V+ +++V+ Y  
Sbjct: 23  GAHLHASLLKS--GSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 258 RGLATEALN----------LVEEIGTPRV----------------------KPNVVTWNT 285
            GL   A+              E   P V                        +V   N 
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           L++ +   G      ++F    +   E + VSW  ++S  V N    +A   F EM+  G
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADS---ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG 197

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             PT    S ++ AC  + N+  G+++H   + MG + D+   +ALVDMY K G +  A 
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIAS 257

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL-SFTAVLTACCHVG 464
            +F+KM + + V+WN++I GC  +G+   AIEL  QM+    + ++ + +++L AC   G
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
             +LG+++   M    K    ++ Y    +VD+  +   L +A ++   M    DL +  
Sbjct: 318 AFDLGRQIHGFM---IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCN 373

Query: 523 ALLGACKNHG 532
           AL+  C + G
Sbjct: 374 ALISGCSHGG 383


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 181/505 (35%), Positives = 265/505 (52%), Gaps = 70/505 (13%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           +A  +F+ IP+ N   W  +   +A       A+ ++  M   GL  N F  P +LK+C 
Sbjct: 27  YAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCA 86

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD------------ 238
                  G++IH  VLK  F  D +V +SLI MY++ G +E A+KVFD            
Sbjct: 87  KSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTA 146

Query: 239 -------------------EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
                              E+  KD+V+ NAM+SGY + G   +AL L +E+    VKP+
Sbjct: 147 LITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPD 206

Query: 280 VVTWNTLISGFSKSGD-----QV--------------MVSKLFQLMRAKG-VE------- 312
             T  T++S  ++SG      QV              +V+ L  L    G VE       
Sbjct: 207 ESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLE 266

Query: 313 ----PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
                DV+SW ++I G  H     EA   F+EML  G  P   T+ SILPACA    +  
Sbjct: 267 GLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 326

Query: 369 GKEIHGCAIVMGVEGDL-----HVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSM 422
           G+ IH   I   ++G +      +R++L+DMYAKCG I  A  + D  +  R+  TWN+M
Sbjct: 327 GRWIH-VYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAM 385

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           IFG A HG  + A ++F++M +   + D ++F  +L+AC H G+++LG+ +F  M++ Y 
Sbjct: 386 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYN 445

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P+ EHY CM+DLLG +G   EA EMI TM  EPD  +W +LL ACK HGN+EL E  A
Sbjct: 446 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFA 505

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           K L ++EPE+  + +LL+++YA AG
Sbjct: 506 KKLIKIEPENPGSYVLLSNIYATAG 530



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 187/433 (43%), Gaps = 59/433 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K    G  I  H    ++   F L    ++  I +Y      Q+G++
Sbjct: 81  LLKSCAKS-----KTFKEGQQIHGH----VLKLGFDLDLYVHTSLISMYA-----QNGRL 126

Query: 100 LHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
             AQ +    +    ++ T LIT Y     I  A+ +FDEIP  ++  W A+   YA  G
Sbjct: 127 EDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETG 186

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            +++A+ +F EM    +K +   + +V+ AC     I  G ++HS +  H FG++  +V+
Sbjct: 187 NYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVN 246

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +LID+YSKCG VE A ++ + +  KD+++ N ++ GY    L  EAL L +E+      P
Sbjct: 247 ALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 306

Query: 279 NVVT------------------W---------------------NTLISGFSKSGDQVMV 299
           N VT                  W                      +LI  ++K GD   +
Sbjct: 307 NDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGD---I 363

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
               Q+  +      + +W ++I G   +   + AFD F  M   G  P   T   +L A
Sbjct: 364 DAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 423

Query: 360 CASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
           C+ +  +  G+ I         +   L     ++D+    G   EA  + + M  E + V
Sbjct: 424 CSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGV 483

Query: 418 TWNSMIFGCANHG 430
            W S++  C  HG
Sbjct: 484 IWCSLLKACKIHG 496


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 163/498 (32%), Positives = 259/498 (52%), Gaps = 35/498 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           LH  +I S + R     ++LI F T C    N+ +AR +F+ I   +++ W ++   Y+ 
Sbjct: 24  LHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSN 83

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                +A+  + EM  +G   + F  P VLKAC  L DI  G  +H  V+K  F  + +V
Sbjct: 84  SPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYV 143

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            + L+ MY  CG V    +VF+++ + ++VA  +++SG+V     ++A+    E+ +  V
Sbjct: 144 STCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGV 203

Query: 277 KPN--------------------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
           KPN                          V+   +LI  ++K GD      LF  M    
Sbjct: 204 KPNETIMVDLLVACGRCFDPYCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMP--- 260

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
            E ++VSW S+I+G   N   +EA   F +ML  G  P   T  S++ A       + G+
Sbjct: 261 -ERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQ 319

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            IH      G   D  +  ALV+MYAK G    A+ +F+ + +++T+ W  +I G A+HG
Sbjct: 320 TIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHG 379

Query: 431 YCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           + ++A+ +F +M+E      D +++  VL AC H+GLVE GQR F  M++ Y + P  EH
Sbjct: 380 HGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEH 439

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           Y CMVD+L RAGR  EA  ++KTM  +P   +WGALL  C+ H N++LA+     +SE E
Sbjct: 440 YGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGALLNGCEIHENLDLADRIRSMVSESE 499

Query: 549 PESAANNMLLTDLYANAG 566
              +   +LL+++YA AG
Sbjct: 500 ELGSGIYVLLSNIYAKAG 517



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 179/395 (45%), Gaps = 51/395 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +Q G  +H  ++ +G      ++T L+  Y  C  ++    +F++IPK N+  W +L 
Sbjct: 120 RDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLI 179

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             +       +A+  F EM   G+K N  ++  +L ACG   D     K         F 
Sbjct: 180 SGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPYCQSK---------FE 230

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  + +SLIDMY+KCG +  A+ +FD M E+++V+ N++++GY Q G A EA+ +  ++
Sbjct: 231 FNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDM 290

Query: 272 GTPRVKPNVVTWNTLI---------------------SGF--------------SKSGDQ 296
               + P+ VT+ ++I                     +GF              +K+G+ 
Sbjct: 291 LDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNA 350

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISS 355
               K+F+ +  K    D ++WT VI GL  +   ++A   F+ M  +G   P   T   
Sbjct: 351 ESAKKMFEDLEKK----DTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLG 406

Query: 356 ILPACASAANMRRGKEIHG-CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           +L AC+    +  G+        + G+E  +     +VD+ ++ G   EA  L   M  +
Sbjct: 407 VLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQ 466

Query: 415 NTVT-WNSMIFGCANHGYCDEAIELFNQMEERKKL 448
            T   W +++ GC  H   D A  + + + E ++L
Sbjct: 467 PTANIWGALLNGCEIHENLDLADRIRSMVSESEEL 501


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 302/561 (53%), Gaps = 71/561 (12%)

Query: 75  HLSPAAYSER--IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           H S   +S R  ++  I  R L++GK LHA  I S +   T ++   +  Y++C+ +  A
Sbjct: 3   HFSSLLHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAA 62

Query: 133 R-------------------------------MLFDEIPKTNIHRWIALTGAYARRGYHQ 161
           R                                LFDE+P+ +   +  L  AYARRG  Q
Sbjct: 63  RRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQ 122

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
            A  +F EM    L  + F +  ++ ACG   ++G   ++H+L +     +   V ++LI
Sbjct: 123 PAFQLFLEMREAFLDMDGFTLSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALI 180

Query: 222 DMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
             YSK G +++A+++F  + E +D V+ N+MV  Y+Q    ++AL L  E+    +  ++
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDI 240

Query: 281 VTWNTLISGFS----------------KSG---DQVMVSKLFQLMRAKG----------- 310
            T  ++++ F+                KSG   +  + S L  L    G           
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD 300

Query: 311 --VEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
               PD+V W ++ISG  ++   +DEA + F+++   G  P   ++  ++ AC++ ++  
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPS 360

Query: 368 RGKEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           +G+++HG A+ + +  + + V +AL+ MY+KCG + +A+TLFD M E NTV++NSMI G 
Sbjct: 361 QGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGY 420

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
           A HG   +++ LF +M E      +++F +VL AC H G VE G+  FNMM++K+ I P 
Sbjct: 421 AQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPE 480

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
             H++CM+DLLGRAG+L+EA  +I+T+  +P  F W ALLGAC+ HGN+ELA  AA  L 
Sbjct: 481 AGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLL 540

Query: 546 ELEPESAANNMLLTDLYANAG 566
           +L+P +AA  ++L ++Y++ G
Sbjct: 541 QLDPLNAAPYVMLANIYSDNG 561


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 275/543 (50%), Gaps = 57/543 (10%)

Query: 73  SFHLSPAAY----SERIEIYIRDRALQSGKILHAQLIVSGLARLT-QIATKLITFYTECQ 127
           S  L+P +Y    +   E ++ +   + G  +HA LI SGL      I   LI  Y +C 
Sbjct: 379 SVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCG 438

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
            I+ A ++F  +   +   W ++     +     EAV  F EM    L  + F + S L 
Sbjct: 439 AINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALS 498

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           +C  L  I  GE++H   LK     D  V ++L+ +Y +CG V++ +K F  M++ D V+
Sbjct: 499 SCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVS 558

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRV------KPNVVTW------------------ 283
            N+++       LA    +++E + +  V       PN VT+                  
Sbjct: 559 WNSLIGA-----LADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ 613

Query: 284 -----------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                            N L++ + K GD      +F  M  +    D VSW S+ISG +
Sbjct: 614 IHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDR---QDEVSWNSMISGYI 670

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
           HN    +A D    M+ +G      T +++L ACA+ A + RG E+HGC++   +E D+ 
Sbjct: 671 HNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIV 730

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           + SALVDMYAKCG I  A   F+ M  RN  +WNSMI G A HG+  ++++LF QM+ + 
Sbjct: 731 IGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQG 790

Query: 447 KL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            L DH++F  VL+AC H GLV  G   F+ M E Y + PR EH++CMVDLLGR G L + 
Sbjct: 791 PLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKM 850

Query: 506 YEMIKTMSTEPDLFVWGALLGAC--KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
            + +  M  +P++ +W  +LGAC   N  N  L   AA+ L E+EP +A N +LL+++YA
Sbjct: 851 EDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYA 910

Query: 564 NAG 566
           + G
Sbjct: 911 SGG 913



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 143/511 (27%), Positives = 229/511 (44%), Gaps = 61/511 (11%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSG----KILHAQLIVSGLARLTQIATKLITFYTEC 126
           S   H +P  + E+IE   +      G    + LH QL  +G      +   LI  Y   
Sbjct: 62  SSQLHHNPVQHDEKIESLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARV 121

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
            ++   R +FDE+P  N+  W  L   Y R     EA  +F +M   G   N +   SV+
Sbjct: 122 GDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVI 181

Query: 187 KACGHLSDIGT--GEKIHSLVLKHSFGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEK 243
           +AC    + G   G +IH L+ K  +  D    + LI MY    G V+ A++ FD +  +
Sbjct: 182 RACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPR 241

Query: 244 DIVAMNAMVSGYVQRGLATEALNLV----EEIGTPRVKPNVVTWNTLI------------ 287
           ++V++N+M+S Y QRG A  A ++     +E+    +KPN  T+ +LI            
Sbjct: 242 NLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLV 301

Query: 288 -------------------------SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
                                    SGF+K+G       +FQ M  +    +VVS   +I
Sbjct: 302 LLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYR----NVVSLNGLI 357

Query: 323 SGLVHNFCNDEAFDTFKEML-SQGFCPTS-ATISSILPACASAAN-MRRGKEIHGCAIVM 379
            GLV     +EA + F EM  S    P S   I +  P      N  R+G E+H   I  
Sbjct: 358 IGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRS 417

Query: 380 G-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           G +   + + + L++MYAKCG I++A  +F  M  +++VTWNSMI G   +    EA++ 
Sbjct: 418 GLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKT 477

Query: 439 FNQMEERKKLDHLSFTAV--LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           F +M  R +L   +FT +  L++C  +G + +G++L +    K  +         ++ L 
Sbjct: 478 FQEM-RRTELYPSNFTMISALSSCASLGWISVGEQL-HCEGLKLGLDLDVSVSNALLALY 535

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           G  G + E  +    M  + D   W +L+GA
Sbjct: 536 GECGYVKECQKAFSLM-LDYDHVSWNSLIGA 565



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 172/386 (44%), Gaps = 57/386 (14%)

Query: 130 HHARMLFDE----IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           HH  +LF+     +P ++I   + L   Y     H   V   H+  I+ L Q        
Sbjct: 33  HHYPLLFNPFTNPLPPSSIPLQV-LVDLYKSSQLHHNPVQ--HDEKIESLAQR------Y 83

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
             +CG        E++H  + K+ F  D F+ ++LI++Y++ G +   +KVFDEM  +++
Sbjct: 84  RYSCGS----KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNL 139

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG----------- 294
           V+ + ++SGY +  +  EA  L  ++ +    PN   + ++I    + G           
Sbjct: 140 VSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIH 199

Query: 295 ---------DQVMVSKLFQLMRAKGV--------------EPDVVSWTSVISGLVHNFCN 331
                    + V  S +   M    +                ++VS  S+IS        
Sbjct: 200 GLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDA 259

Query: 332 DEAFDTF----KEMLSQGFCPTSATISSILPACASAAN--MRRGKEIHGCAIVMGVEGDL 385
             AFD F    KE++  G  P   T  S++ A  S AN  +   +++       G   DL
Sbjct: 260 VSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDL 319

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           +V SALV  +AK G I  A+ +F KMS RN V+ N +I G       +EA+ELF +M++ 
Sbjct: 320 YVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDS 379

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQR 471
            +L+  S+  +LTA     ++E G+R
Sbjct: 380 VELNPNSYMIILTAFPEFHVLENGKR 405



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 130/281 (46%), Gaps = 19/281 (6%)

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           NTLI+ +++ GD     K+F  M  +    ++VSW+ +ISG   N   +EA + F++M+S
Sbjct: 112 NTLINIYARVGDLGSGRKVFDEMPLR----NLVSWSCLISGYTRNRMPNEACELFRKMVS 167

Query: 344 QGFCPTSATISSILPACASAA--NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC-GF 400
            GF P      S++ AC       ++ G +IHG         D+   + L+ MY    G 
Sbjct: 168 DGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGM 227

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL-----SFTA 455
           +  AR  FD +  RN V+ NSMI      G    A ++F+ M++    D L     +F +
Sbjct: 228 VDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGS 287

Query: 456 VLTACCHV---GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           +++A C +   GLV L Q L  +  EK   +      + +V    +AG +  A  + + M
Sbjct: 288 LISATCSLANSGLVLLEQLLTRV--EKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKM 345

Query: 513 STEPDLFVWGALLGACKNHGNIELAEI--AAKHLSELEPES 551
           S    + + G ++G  +     E  E+    K   EL P S
Sbjct: 346 SYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNS 386


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/532 (32%), Positives = 281/532 (52%), Gaps = 51/532 (9%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHARM 134
           SP ++          R+++   + +  ++  G   +    + +  I+ Y E  ++  +R 
Sbjct: 217 SPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRR 276

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI-----FVIPSVLKAC 189
           +FD   + NI  W  + G Y +     E++ +F E    G K+ +     F++ +   A 
Sbjct: 277 VFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEA--IGSKEIVSDEVTFLLAA--SAV 332

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
             L  +  G + H  V K+       +++SL+ MYS+CG V+K+  VF  M E+D+V+ N
Sbjct: 333 SGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWN 392

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG-------------------- 289
            M+S +VQ GL  E L LV E+     K + +T   L+S                     
Sbjct: 393 TMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQ 452

Query: 290 --------------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                         ++KSG   +  KLF+   +   E D  +W S+ISG   N   +E F
Sbjct: 453 GIQFEGMNSYLIDMYAKSGLIRISQKLFE--GSGYAERDQATWNSMISGYTQNGHTEETF 510

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F++ML Q   P + T++SILPAC+   ++  GK++HG +I   ++ ++ V SALVDMY
Sbjct: 511 LVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMY 570

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           +K G I  A  +F +  ERN+VT+ +MI G   HG  + AI LF  M+E   K D ++F 
Sbjct: 571 SKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFV 630

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVL+AC + GLV+ G ++F  M+E Y I P +EHY C+ D+LGR GR+ EAYE +K +  
Sbjct: 631 AVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGE 690

Query: 515 EPDLF-VWGALLGACKNHGNIELAEIAAKHLSELEPES--AANNMLLTDLYA 563
           E ++  +WG+LLG+C+ HG +ELAE  ++ L++L+     +   +LL+++YA
Sbjct: 691 EGNIAELWGSLLGSCRLHGELELAETVSERLAKLDKGKNFSGYEVLLSNMYA 742



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 234/506 (46%), Gaps = 54/506 (10%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA-------- 132
           YS  ++     + L++GK +H  LI         +   L+  Y  C N   +        
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYD 169

Query: 133 --RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
             R +FD + + N+  W  L   Y + G + EA   F  M    +K +     +V  A  
Sbjct: 170 VVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVA 229

Query: 191 HLSDIGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
               I      + L+LK    +  D FVVSS I MY++ G +E +++VFD  VE++I   
Sbjct: 230 TSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVW 289

Query: 249 NAMVSGYVQRGLATEALNL-VEEIGTPRVKPNVVTWNTLISGFSKSGDQ----------- 296
           N M+  YVQ     E++ L +E IG+  +  + VT+  L++  + SG Q           
Sbjct: 290 NTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTF--LLAASAVSGLQQVELGRQFHGF 347

Query: 297 -----------------VMVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEA 334
                            VM S+   + ++ GV     E DVVSW ++IS  V N  +DE 
Sbjct: 348 VSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEG 407

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
                EM  QGF     T++++L A ++  N   GK+ HG  I  G++ +  + S L+DM
Sbjct: 408 LMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFE-GMNSYLIDM 466

Query: 395 YAKCGFISEARTLFD--KMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
           YAK G I  ++ LF+    +ER+  TWNSMI G   +G+ +E   +F +M E+  + + +
Sbjct: 467 YAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAV 526

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +  ++L AC  VG V+LG++L      +Y +       + +VD+  +AG +  A  M  +
Sbjct: 527 TVASILPACSQVGSVDLGKQLHGFSIRQY-LDQNVFVASALVDMYSKAGAIKYAENMF-S 584

Query: 512 MSTEPDLFVWGALLGACKNHGNIELA 537
            + E +   +  ++     HG  E A
Sbjct: 585 QTKERNSVTYTTMILGYGQHGMGERA 610



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 205/460 (44%), Gaps = 52/460 (11%)

Query: 126 CQ--NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG--LKQNIFV 181
           CQ  N   AR LFD IPK     W  +   +       EA+  +  M       K + + 
Sbjct: 50  CQEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYT 109

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC----GS------VE 231
             S LKAC    ++  G+ +H  +++    +   V +SL++MY  C    GS       +
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYD 169

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291
             +KVFD M  K++VA N ++S YV+ G   EA      +    +KP+ V++  +    +
Sbjct: 170 VVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVA 229

Query: 292 KS----------------GDQV------------MVSKLFQLMRAKGV-----EPDVVSW 318
            S                GD+             M ++L  L  ++ V     E ++  W
Sbjct: 230 TSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVW 289

Query: 319 TSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
            ++I   V N C  E+ + F E + S+       T      A +    +  G++ HG   
Sbjct: 290 NTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVS 349

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
               E  + + ++L+ MY++CGF+ ++  +F  M ER+ V+WN+MI     +G  DE + 
Sbjct: 350 KNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLM 409

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           L  +M+++  K+D+++ TA+L+A  ++   E+G++    +  +         Y  ++D+ 
Sbjct: 410 LVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEGMNSY--LIDMY 467

Query: 497 GRAGRLAEAYEMIK-TMSTEPDLFVWGALLGACKNHGNIE 535
            ++G +  + ++ + +   E D   W +++     +G+ E
Sbjct: 468 AKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTE 507



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 105/241 (43%), Gaps = 4/241 (1%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK LH   I   L +   +A+ L+  Y++   I +A  +F +  + N   +  +   Y +
Sbjct: 544 GKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQ 603

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAF 215
            G  + A+++F  M   G+K +     +VL AC +   +  G KI   + + ++    + 
Sbjct: 604 HGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSE 663

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA--MNAMVSGYVQRGLATEALNLVEEIGT 273
               + DM  + G V +A +    + E+  +A    +++      G    A  + E +  
Sbjct: 664 HYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAK 723

Query: 274 PRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                N   +  L+S  +++  +   V ++ + MR KG++ +V      ++G V+ F + 
Sbjct: 724 LDKGKNFSGYEVLLSNMYAEEQNWKSVDRVRKGMREKGLKKEVGRSGIEVAGHVNCFVSR 783

Query: 333 E 333
           +
Sbjct: 784 D 784


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 170/490 (34%), Positives = 264/490 (53%), Gaps = 45/490 (9%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + +  I+ Y E  +I  +R +FD   + NI  W  + G Y +     E++ +F E    G
Sbjct: 253 VVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAI--G 310

Query: 175 LKQNIFVIPSVL---KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
            K+ +    + L    A   L  +  G + H  V K+       +V+SL+ MYS+CGSV 
Sbjct: 311 SKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVH 370

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG-- 289
           K+  VF  M E+D+V+ N M+S +VQ GL  E L LV E+     K + +T   L+S   
Sbjct: 371 KSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAAS 430

Query: 290 --------------------------------FSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                                           +SKSG   +  KLF+   +   E D  +
Sbjct: 431 NLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFE--GSGYAERDQAT 488

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W S+ISG   N   ++ F  F++ML Q   P + T++SILPAC+   ++  GK++HG +I
Sbjct: 489 WNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSI 548

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
              ++ ++ V SALVDMY+K G I  A  +F +  ERN+VT+ +MI G   HG  + AI 
Sbjct: 549 RQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAIS 608

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF  M+E   K D ++F AVL+AC + GL++ G ++F  M+E Y I P +EHY C+ D+L
Sbjct: 609 LFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDML 668

Query: 497 GRAGRLAEAYEMIKTMSTEPDLF-VWGALLGACKNHGNIELAEIAAKHLSELEPES--AA 553
           GR GR+ EAYE +K +  E ++  +WG+LLG+CK HG +ELAE  ++ L++ +     + 
Sbjct: 669 GRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSG 728

Query: 554 NNMLLTDLYA 563
             +LL+++YA
Sbjct: 729 YEVLLSNMYA 738



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 231/500 (46%), Gaps = 46/500 (9%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHH------ARM 134
           YS  ++     + L++GK +H  LI         +   L+  Y  C N          R 
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRK 169

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +FD + + N+  W  L   Y + G + EA   F  M    +K +     +V  A      
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRS 229

Query: 195 IGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
           I      + L+LK    +  D FVVSS I MY++ G +E +++VFD  VE++I   N M+
Sbjct: 230 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMI 289

Query: 253 SGYVQRGLATEALNL-VEEIGTPRVKPNVVTWNTLISGFS-----KSGDQ---------- 296
             YVQ     E++ L +E IG+  +  + VT+    S  S     + G Q          
Sbjct: 290 GVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFR 349

Query: 297 -----------VMVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
                      VM S+   + ++ GV     E DVVSW ++IS  V N  +DE      E
Sbjct: 350 ELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYE 409

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M  QGF     T++++L A ++  N   GK+ H   I  G++ +  + S L+DMY+K G 
Sbjct: 410 MQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFE-GMNSYLIDMYSKSGL 468

Query: 401 ISEARTLFD--KMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVL 457
           I  ++ LF+    +ER+  TWNSMI G   +G+ ++   +F +M E+  + + ++  ++L
Sbjct: 469 IRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASIL 528

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            AC  +G V+LG++L      +Y +       + +VD+  +AG +  A +M  + + E +
Sbjct: 529 PACSQIGSVDLGKQLHGFSIRQY-LDQNVFVASALVDMYSKAGAIKYAEDMF-SQTKERN 586

Query: 518 LFVWGALLGACKNHGNIELA 537
              +  ++     HG  E A
Sbjct: 587 SVTYTTMILGYGQHGMGERA 606



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 204/458 (44%), Gaps = 52/458 (11%)

Query: 126 CQ--NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN--IFV 181
           CQ  N   AR LFD IPK     W  +   +       EA+  +  M       N   + 
Sbjct: 50  CQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYT 109

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV------EKAKK 235
             S LKAC    ++  G+ +H  +++    +   V +SL++MY  C +       +  +K
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRK 169

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS---- 291
           VFD M  K++VA N ++S YV+ G   EA      +    VKP+ V++  +    S    
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRS 229

Query: 292 ------------KSGDQVMVSKLFQLMRAKG------------------VEPDVVSWTSV 321
                       K GD+  V  LF +  A                    VE ++  W ++
Sbjct: 230 IKKANVFYGLMLKLGDE-YVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTM 288

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA--NMRRGKEIHGCAIVM 379
           I   V N C  E+ + F E +       S  ++ +L A A +A   +  G++ HG     
Sbjct: 289 IGVYVQNDCLVESIELFLEAIGSKEI-VSDEVTYLLAASAVSALQQVELGRQFHGFVSKN 347

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
             E  + + ++L+ MY++CG + ++  +F  M ER+ V+WN+MI     +G  DE + L 
Sbjct: 348 FRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLV 407

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
            +M+++  K+D+++ TA+L+A  ++   E+G++    +  +         Y  ++D+  +
Sbjct: 408 YEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSY--LIDMYSK 465

Query: 499 AGRLAEAYEMIK-TMSTEPDLFVWGALLGACKNHGNIE 535
           +G +  + ++ + +   E D   W +++     +G+ E
Sbjct: 466 SGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTE 503



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 129/257 (50%), Gaps = 4/257 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE--IPKTNIHRWIA 149
           R  + GK  HA LI  G+ +   + + LI  Y++   I  ++ LF+     + +   W +
Sbjct: 433 RNKEIGKQTHAFLIRQGI-QFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNS 491

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y + G+ ++   VF +M  Q ++ N   + S+L AC  +  +  G+++H   ++  
Sbjct: 492 MISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQY 551

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              + FV S+L+DMYSK G+++ A+ +F +  E++ V    M+ GY Q G+   A++L  
Sbjct: 552 LDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFL 611

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR-AKGVEPDVVSWTSVISGLVHN 328
            +    +KP+ +T+  ++S  S SG      K+F+ MR    ++P    +  +   L   
Sbjct: 612 SMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRV 671

Query: 329 FCNDEAFDTFKEMLSQG 345
              +EA++  K +  +G
Sbjct: 672 GRVNEAYEFVKGLGEEG 688



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 134/308 (43%), Gaps = 45/308 (14%)

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           +V K+F  MR K    +VV+W ++IS  V    N EA   F  M+     P+  +  ++ 
Sbjct: 166 VVRKVFDNMRRK----NVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVF 221

Query: 358 PACASAANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           PA + + ++++    +G  + +G E   DL V S+ + MYA+ G I  +R +FD   ERN
Sbjct: 222 PAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERN 281

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLF 473
              WN+MI     +    E+IELF +    K++  D +++    +A   +  VELG++  
Sbjct: 282 IEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFH 341

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG----------- 522
             + + ++ +P     + MV +  R G + +++ +  +M  E D+  W            
Sbjct: 342 GFVSKNFRELPIVIVNSLMV-MYSRCGSVHKSFGVFLSMR-ERDVVSWNTMISAFVQNGL 399

Query: 523 ------------------------ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
                                   ALL A  N  N E+ +     L     +    N  L
Sbjct: 400 DDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYL 459

Query: 559 TDLYANAG 566
            D+Y+ +G
Sbjct: 460 IDMYSKSG 467


>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group]
          Length = 566

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 173/483 (35%), Positives = 263/483 (54%), Gaps = 33/483 (6%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+ FY   + +  A+ LFD++P      W  L   +A+      AV  F  M   G+ 
Sbjct: 51  TALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVS 110

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
                + SVL AC  L + G G  +HS+ L+  F     V ++L+DMY+KC  +  A++V
Sbjct: 111 PTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQV 170

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----- 291
           F EM EK++    A+V+G+V      +A+ LV E+    V PN++T+++L+S F+     
Sbjct: 171 FGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDI 230

Query: 292 -----------KSG---DQVMVSKLFQLMRAKGVEPDV------------VSWTSVISGL 325
                      K G   D  ++S L  +    G+  D             VS+ SVISGL
Sbjct: 231 DHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGL 290

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  EAF  F EM   G      T +SIL A  S++++  G+++H   + +G +  +
Sbjct: 291 SCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVV 350

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
            V+++L+ MYA+ G I E+  +F  M   N V+WNS++ GCA HG+  E +E+F QM   
Sbjct: 351 DVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRL 410

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK-YKIMPRTEHYACMVDLLGRAGRLA 503
             + DH++F +VLTAC HVGLV+ G   FN+M++K Y +  RT+HYACMVDLLGRAG L 
Sbjct: 411 HVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLN 470

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA  +I  M  +P   V+ ALL AC+ HGN+E+A   +K L EL P  ++ ++ L++ +A
Sbjct: 471 EAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFA 530

Query: 564 NAG 566
             G
Sbjct: 531 GDG 533



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 34/388 (8%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G +LH+  +  G      + T L+  Y +C+ +  A+ +F E+ + N+  + AL   + 
Sbjct: 131 AGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFV 190

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                 +AV +  EM   G+  N+    S+L +     DI  G+++H  VLK     D F
Sbjct: 191 LSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPF 250

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V+S+L+ MYSKCG  E   KV   +  +D V+ N+++SG    G   EA     E+    
Sbjct: 251 VLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHG 310

Query: 276 VKPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAK 309
              +V T+ +++     S     G QV                     M ++   +  + 
Sbjct: 311 TDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESN 370

Query: 310 GV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           GV      P++VSW S++SG   +    E  + F++M      P   T  S+L AC+   
Sbjct: 371 GVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVG 430

Query: 365 NMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNS 421
            + +G E        G  V       + +VD+  + G+++EA  L + M  +     + +
Sbjct: 431 LVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRA 490

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLD 449
           ++  C  HG  + AI +  ++ E    D
Sbjct: 491 LLSACQIHGNLEIAIRVSKRLMELNPHD 518



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 118/236 (50%), Gaps = 12/236 (5%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ------NIHHARM 134
           YS  +  +     +  GK +H  ++  GL     + + L+T Y++C        +  +  
Sbjct: 217 YSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVS 276

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
             D++   ++   ++  G    RG  +EA   F EM   G   ++F   S+LKA G  S 
Sbjct: 277 CQDQVSFNSVISGLSCLG----RG--KEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSS 330

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G ++H+L+LK  + +   V +SLI MY++ G++ ++  VF  M   ++V+ N+++SG
Sbjct: 331 LLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSG 390

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
             Q G   E + + E++    V+P+ +T+ ++++  S  G      + F LM+ KG
Sbjct: 391 CAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 446



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 106/241 (43%), Gaps = 11/241 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ +H  ++  G   +  +   LI+ Y     I  +  +F  +   N+  W +L  
Sbjct: 330 SLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMS 389

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF-- 210
             A+ G+ +E V +F +M    ++ +     SVL AC H+  +  G +  +L+    +  
Sbjct: 390 GCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLV 449

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           G      + ++D+  + G + +A+ + + M ++       A++S     G    A+ + +
Sbjct: 450 GARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSK 509

Query: 270 EIGTPRVKPNVVTWNTLIS-GFSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVISGLV 326
            +    + P+  + +  +S  F+  G     +++ + M  KG+  EP   SW+ +   + 
Sbjct: 510 RL--MELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEP---SWSRIEDQMQ 564

Query: 327 H 327
           H
Sbjct: 565 H 565


>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group]
          Length = 566

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 173/483 (35%), Positives = 263/483 (54%), Gaps = 33/483 (6%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+ FY   + +  A+ LFD++P      W  L   +A+      AV  F  M   G+ 
Sbjct: 51  TALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVS 110

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
                + SVL AC  L + G G  +HS+ L+  F     V ++L+DMY+KC  +  A++V
Sbjct: 111 PTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQV 170

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----- 291
           F EM EK++    A+V+G+V      +A+ LV E+    V PN++T+++L+S F+     
Sbjct: 171 FGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDI 230

Query: 292 -----------KSG---DQVMVSKLFQLMRAKGVEPDV------------VSWTSVISGL 325
                      K G   D  ++S L  +    G+  D             VS+ SVISGL
Sbjct: 231 DHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGL 290

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  EAF  F EM   G      T +SIL A  S++++  G+++H   + +G +  +
Sbjct: 291 SCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVV 350

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
            V+++L+ MYA+ G I E+  +F  M   N V+WNS++ GCA HG+  E +E+F QM   
Sbjct: 351 DVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRL 410

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK-YKIMPRTEHYACMVDLLGRAGRLA 503
             + DH++F +VLTAC HVGLV+ G   FN+M++K Y +  RT+HYACMVDLLGRAG L 
Sbjct: 411 HVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLN 470

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA  +I  M  +P   V+ ALL AC+ HGN+E+A   +K L EL P  ++ ++ L++ +A
Sbjct: 471 EAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFA 530

Query: 564 NAG 566
             G
Sbjct: 531 GDG 533



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 34/388 (8%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G +LH+  +  G      + T L+  Y +C+ +  A+ +F E+ + N+  + AL   + 
Sbjct: 131 AGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFV 190

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                 +AV +  EM   G+  N+    S+L +     DI  G+++H  VLK     D F
Sbjct: 191 LSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPF 250

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V+S+L+ MYSKCG  E   KV   +  +D V+ N+++SG    G   EA     E+    
Sbjct: 251 VLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHG 310

Query: 276 VKPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAK 309
              +V T+ +++     S     G QV                     M ++   +  + 
Sbjct: 311 TDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESN 370

Query: 310 GV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           GV      P++VSW S++SG   +    E  + F++M      P   T  S+L AC+   
Sbjct: 371 GVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVG 430

Query: 365 NMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNS 421
            + +G E        G  V       + +VD+  + G+++EA  L + M  +     + +
Sbjct: 431 LVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRA 490

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLD 449
           ++  C  HG  + AI +  ++ E    D
Sbjct: 491 LLSACQIHGNLEIAIRVSKRLMELNPHD 518



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 118/236 (50%), Gaps = 12/236 (5%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ------NIHHARM 134
           YS  +  +     +  GK +H  ++  GL     + + L+T Y++C        +  +  
Sbjct: 217 YSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVS 276

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
             D++   ++   ++  G    RG  +EA   F EM   G   ++F   S+LKA G  S 
Sbjct: 277 CQDQVSFNSVISGLSCLG----RG--KEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSS 330

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G ++H+L+LK  + +   V +SLI MY++ G++ ++  VF  M   ++V+ N+++SG
Sbjct: 331 LLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSG 390

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
             Q G   E + + E++    V+P+ +T+ ++++  S  G      + F LM+ KG
Sbjct: 391 CAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 446



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 106/241 (43%), Gaps = 11/241 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ +H  ++  G   +  +   LI+ Y     I  +  +F  +   N+  W +L  
Sbjct: 330 SLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMS 389

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF-- 210
             A+ G+ +E V +F +M    ++ +     SVL AC H+  +  G +  +L+    +  
Sbjct: 390 GCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLV 449

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           G      + ++D+  + G + +A+ + + M ++       A++S     G    A+ + +
Sbjct: 450 GARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSK 509

Query: 270 EIGTPRVKPNVVTWNTLIS-GFSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVISGLV 326
            +    + P+  + +  +S  F+  G     +++ + M  KG+  EP   SW+ +   + 
Sbjct: 510 RL--MELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEP---SWSRIEDQMQ 564

Query: 327 H 327
           H
Sbjct: 565 H 565


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 166/511 (32%), Positives = 269/511 (52%), Gaps = 40/511 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R +++G+ +HA ++  G  +    A  L+  Y +   +  A ++F+++P +++  W AL 
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
                 G+   A+ +  +M   GL  N+F + S+LKAC        G +IH  ++K +  
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANAD 335

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D ++   L+DMY+K   ++ A+KVFD M  +D++  NA++SG    G   EAL+L  E+
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
               +  N  T                                    N LI  + K    
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              +++F+    +    D+++ TS+I+ L      + A   F EML +G  P    +SS+
Sbjct: 456 SDANRVFE----ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL 511

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACAS +   +GK++H   I      D    +ALV  YAKCG I +A   F  + ER  
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+W++MI G A HG+   A+ELF +M +E    +H++ T+VL AC H GLV+  +R FN 
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNS 631

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M+E + I    EHY+CM+DLLGRAG+L +A E++ +M  + +  +WGALLGA + H + E
Sbjct: 632 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPE 691

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L ++AA+ L  LEPE +  ++LL + YA+AG
Sbjct: 692 LGKLAAEKLFILEPEKSGTHVLLANTYASAG 722



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 211/420 (50%), Gaps = 46/420 (10%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           S    S+++  Y   +AL  G  LHA L+ SG   L      LI+FY++C+    AR +F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVF 60

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           DEIP      W +L  AY+  G  + A+  FH M  +G+  N F +P VLK    + D  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAR 117

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGY 255
            G ++H++ +   FG+D FV ++L+ MY   G ++ A++VF+E   E++ V+ N ++S Y
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 256 VQRGLATEALNLVEEIGTPRVKP-----------------------------------NV 280
           V+     +A+ +  E+    ++P                                   +V
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDV 237

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
            T N L+  + K G   + S +F+ M     + DVVSW ++ISG V N  +  A +   +
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMP----DSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M   G  P   T+SSIL AC+ A     G++IHG  I    + D ++   LVDMYAK  F
Sbjct: 294 MKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTA 459
           + +AR +FD M  R+ +  N++I GC++ G  DEA+ LF ++ +E   ++  +  AVL +
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 217/471 (46%), Gaps = 37/471 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYA 155
           G  +HA  + +G      +A  L+  Y     +  AR +F+E   + N   W  L  AY 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +     +A+ VF EM   G++   F    V+ AC    +I  G ++H++V++  +  D F
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVF 238

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             ++L+DMY K G V+ A  +F++M + D+V+ NA++SG V  G    A+ L+ ++    
Sbjct: 239 TANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--------------------- 314
           + PNV T ++++   S +G   +  ++   M     + D                     
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 315 -VVSW---------TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            V  W          ++ISG  H   +DEA   F E+  +G      T++++L + AS  
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
                +++H  A+ +G   D HV + L+D Y KC  +S+A  +F++ S  + +   SMI 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 425 GCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
             +   + + AI+LF +M  RK L  D    +++L AC  +   E G+++   +  K + 
Sbjct: 479 ALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI-KRQF 536

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           M        +V    + G + +A E+  +   E  +  W A++G    HG+
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGH 586



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 170/370 (45%), Gaps = 44/370 (11%)

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G  +H+ +LK   G+ A   + LI  YSKC     A++VFDE+ +   V+ +++V+ Y  
Sbjct: 23  GAHLHASLLKS--GSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 258 RGLATEALN----------LVEEIGTPRV----------------------KPNVVTWNT 285
            GL   A+              E   P V                        +V   N 
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           L++ +   G      ++F    +   E + VSW  ++S  V N    +A   F EM+  G
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADS---ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG 197

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             PT    S ++ AC  + N+  G+++H   + MG + D+   +ALVDMY K G +  A 
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIAS 257

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL-SFTAVLTACCHVG 464
            +F+KM + + V+WN++I GC  +G+   AIEL  QM+    + ++ + +++L AC   G
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
             +LG+++   M    K    ++ Y    +VD+  +   L +A ++   M    DL +  
Sbjct: 318 AFDLGRQIHGFM---IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCN 373

Query: 523 ALLGACKNHG 532
           AL+  C + G
Sbjct: 374 ALISGCSHGG 383


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 182/516 (35%), Positives = 272/516 (52%), Gaps = 48/516 (9%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           + +AL+ G  LHA ++ +G      ++  ++  Y +C +   AR +FDE+ + N+  W A
Sbjct: 15  KTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSA 74

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y + G  Q A+ ++ +M    L  N +V  SV+ AC  LS +  G+KIHS  LK  
Sbjct: 75  MISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFG 131

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ-----RGL---- 260
           + + +FV +SLI MY KC     A  VF    E + V+ NA+++G+V+     RGL    
Sbjct: 132 YESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFK 191

Query: 261 ----------------------ATEALNLVEEIGTPRVKPNV----VTWNTLISGFSKSG 294
                                  TE L    E+    VK N+       N +I+ +S+  
Sbjct: 192 LMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELN 251

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA--FDTFKEMLSQ-GFCPTSA 351
                 K F+L+     E DV+SW ++I+   H  C+D A     FK M  +    P   
Sbjct: 252 LIQEAEKAFRLIE----EKDVISWNTLIAACSH--CDDHAKGLRVFKHMTEETNVRPDDF 305

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T +S L ACA  A+M  GK+IH   +   +  DL V +ALV+MYAKCG I  A  +F KM
Sbjct: 306 TFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKM 365

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ 470
              N V+WN++I G  NHG  + A+ELF QM     + D ++F  +LTAC H GLV+ GQ
Sbjct: 366 VHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQ 425

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
             FN M+E Y I P  EH++C++D+LGRAGRL EA E ++      D  V  +LL A + 
Sbjct: 426 LYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRL 485

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           HG++ + E  AK L +L+P + +  +LL++LYA+ G
Sbjct: 486 HGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDG 521



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 195/425 (45%), Gaps = 62/425 (14%)

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
            + S+L  C     +  G  +H+ VLK    +D F+ + +++MY+KCG    A++VFDEM
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG----------- 289
            EK++V+ +AM+SGY Q G    A++L  ++    + PN   + ++IS            
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSAVTLGQ 121

Query: 290 ---------------FSKSGDQVMVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNF 329
                          F  +    M  K  Q   A  V     EP+ VS+ ++I+G V N 
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             +   + FK M  QG  P       +L  C +  N++RG E+H   + + ++    + +
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN 241

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE---AIELFNQMEERK 446
            ++ MY++   I EA   F  + E++ ++WN++I  C+   +CD+    + +F  M E  
Sbjct: 242 VIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACS---HCDDHAKGLRVFKHMTEET 298

Query: 447 KL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA------CMVDLLGR 498
            +  D  +FT+ L AC  +  +  G+++       +  + RT  Y        +V++  +
Sbjct: 299 NVRPDDFTFTSALAACAGLASMSHGKQI-------HAHLMRTRLYQDLGVGNALVNMYAK 351

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG----NIELAEIAAKHLSELEPESAAN 554
            G +  AY++   M    +L  W  ++    NHG     +EL E    + S + P+S   
Sbjct: 352 CGCIGYAYDIFSKM-VHHNLVSWNTIIAGFGNHGLGERAVELFE--QMNASGIRPDSVTF 408

Query: 555 NMLLT 559
             LLT
Sbjct: 409 IGLLT 413



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 2/123 (1%)

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           + T+SS+L  C+    +R G  +H   +  G + D+ + + +++MYAKCG  + AR +FD
Sbjct: 3   TETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFD 62

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           +M E+N V+W++MI G    G    AI+L++QM      +   F +V++AC  +  V LG
Sbjct: 63  EMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVP--NEYVFASVISACASLSAVTLG 120

Query: 470 QRL 472
           Q++
Sbjct: 121 QKI 123


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 181/556 (32%), Positives = 277/556 (49%), Gaps = 83/556 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH---RWIA 149
           + + G  +HA +  SG      +   L++ Y  C    +AR +FDE+ +  +     W +
Sbjct: 160 SFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNS 219

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           +  AY + G    A+ +F  M    G++ +   + +VL AC  +     G+++H   L+ 
Sbjct: 220 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 279

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY------------- 255
               D FV ++++DMY+KCG +E+A KVF+ M  KD+V+ NAMV+GY             
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 339

Query: 256 ----------------------VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
                                  QRGL  EAL++  ++     +PNVVT  +L+SG + +
Sbjct: 340 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASA 399

Query: 294 G-------------------------DQVMVSKLFQLMRAKGVEP--------------- 313
           G                         D +MV      M +K   P               
Sbjct: 400 GTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDR 459

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKE 371
            VV+WT +I G   +   +EA + F +ML       P + TIS  L ACA    +R G++
Sbjct: 460 SVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQ 519

Query: 372 IHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           IH   +    E   L V + L+DMY+K G +  AR +FD M +RN V+W S++ G   HG
Sbjct: 520 IHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHG 579

Query: 431 YCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
             +EA+++F +M++   + D ++F  VL AC H G+V+ G   FN M + + ++P  EHY
Sbjct: 580 RGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHY 639

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
           ACMVDLL RAGRL EA E+I+ M  +P   VW ALL AC+ + N+EL E AA  L ELE 
Sbjct: 640 ACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELES 699

Query: 550 ESAANNMLLTDLYANA 565
            +  +  LL+++YANA
Sbjct: 700 GNDGSYTLLSNIYANA 715



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 143/535 (26%), Positives = 244/535 (45%), Gaps = 98/535 (18%)

Query: 92  RALQSGKILHAQLIVSGLAR-LTQIATKLITFYTECQNIHHARMLFDEIPKTN-IHRWIA 149
           ++L S ++ H QL+V GL    T I +  +TF +  + +   R L    P ++ +  W  
Sbjct: 59  KSLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLH---PSSHTVFWWNQ 115

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L       G+ ++ + ++  M   G + + +  P VLKACG +     G  +H++V    
Sbjct: 116 LIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASG 175

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALN 266
           F  + FV + L+ MY +CG+ E A++VFDEM E+   D+V+ N++V+ Y+Q G +  A+ 
Sbjct: 176 FEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMK 235

Query: 267 LVEEIGTP-RVKPNVVT-------------W----------------------NTLISGF 290
           + E +     ++P+ V+             W                      N ++  +
Sbjct: 236 MFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMY 295

Query: 291 SKSGDQVMVSKLFQLMRAKGV-------------------------------EPDVVSWT 319
           +K G     +K+F+ M+ K V                               E +VV+W+
Sbjct: 296 AKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWS 355

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI-- 377
           +VI+G        EA D F++ML  G  P   T+ S+L  CASA  +  GKE H  AI  
Sbjct: 356 AVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKW 415

Query: 378 VMGVE-----GDLHVRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHG 430
           ++ ++      DL V +AL+DMY+KC     AR +FD +   +R+ VTW  +I G A HG
Sbjct: 416 ILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHG 475

Query: 431 YCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
             +EA+ELF+QM +       +  + +  L AC  +G +  G+++       Y +  R E
Sbjct: 476 EANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQI-----HAYVLRNRFE 530

Query: 488 HYA-----CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
                   C++D+  ++G +  A  +   M     +  W +L+     HG  E A
Sbjct: 531 SAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGV-SWTSLMTGYGMHGRGEEA 584



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 122/275 (44%), Gaps = 24/275 (8%)

Query: 93  ALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           AL+ G+ +HA ++ +   + +  +A  LI  Y++  ++  AR++FD + + N   W +L 
Sbjct: 513 ALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLM 572

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G  +EA+ +F+EM    L  +      VL AC H   +  G    + + K  FG
Sbjct: 573 TGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNK-DFG 631

Query: 212 T--DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI----VAMNAMVSGYVQRGLATEAL 265
               A   + ++D+ S+ G +++A ++   M  K      VA+ +    Y    L   A 
Sbjct: 632 VVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAA 691

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISG 324
           N + E+ +     N  ++  L + ++ +     V+++  LM+  G++     SW     G
Sbjct: 692 NQLLELES----GNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKG 747

Query: 325 LVHNFCND-------EAFDTFKEMLSQ----GFCP 348
               F  D       + +D  ++++ +    G+ P
Sbjct: 748 TATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVP 782


>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
          Length = 829

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 264/477 (55%), Gaps = 3/477 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T ++ FY +   I +A M+FD + + ++  W  L  
Sbjct: 284 GIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLIS 343

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+ +   M    L  +   + S++ A     ++  G+++    ++H F +
Sbjct: 344 GYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVS 403

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ ++MY+KCGS+  AKKVF+  VEKD++  N +++ Y + GL+ EAL L  E+ 
Sbjct: 404 DIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQ 463

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN++I    ++G       +F  M++ G+ P+++SWT++++GLV N C++
Sbjct: 464 LEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSE 523

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M   G      +I+  L ACA+ A++  G+ IHG  I        + + ++L
Sbjct: 524 EAIVYLRKMQESGLRLNVFSITVALSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSL 583

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--D 449
           VDMYAKCG IS+A  +F          +N+MI   A +G   EA  L+  ++E   +  D
Sbjct: 584 VDMYAKCGDISKAERVFGSKLYSELPLYNAMISAYALYGNVKEATALYRSLDEDVGIEPD 643

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           +++ T VL+AC H G +     +F  M  K+ + P  EHY  MVDLL  AG   +A  +I
Sbjct: 644 NITITNVLSACHHAGDINQAIHIFTDMVSKHAMKPCLEHYGLMVDLLASAGETEKALRLI 703

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + M  +PD  +  +LL +C      EL E  ++HL E EPE++ N + ++++YA  G
Sbjct: 704 EEMPYKPDARMIQSLLASCNKQHKSELVEYLSRHLLESEPENSGNYVTISNVYAVEG 760



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/535 (28%), Positives = 261/535 (48%), Gaps = 40/535 (7%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQN 128
           SR+  + P  Y E ++  + +R L +G+ +HA+++ +G   A+   I TKL+ FY +C  
Sbjct: 58  SRNVRIGPEIYGEILQGCVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDA 117

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +  A++LF ++   N+  W A+ G   R G  + A+  F EM   GL  + FV+P+V KA
Sbjct: 118 LEVAQLLFSKLRARNVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKA 177

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           CG L     G  +H  V K       FV SSL DMY KCG ++ A+KVFDE+ ++ +VA 
Sbjct: 178 CGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAW 237

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG-------------- 294
           NA++ GYVQ G+  EA+ L+  +    ++P  VT +T +S  +  G              
Sbjct: 238 NALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIV 297

Query: 295 -----DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
                D ++ + +             +++  + +E DVV+W  +ISG V     ++A   
Sbjct: 298 NGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHM 357

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            + M          T+SS++ A A   N++ GKE+    I  G   D+ + S  V+MYAK
Sbjct: 358 CQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAK 417

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAV 456
           CG I +A+ +F+   E++ + WN+++   A  G   EA+ LF +M+ E    + +++ +V
Sbjct: 418 CGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSV 477

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           + +    G V   + +F  MQ    I P    +  M++ L + G   EA   ++ M    
Sbjct: 478 ILSLLRNGQVNEAKDMFLQMQSS-GISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQESG 536

Query: 517 ---DLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
              ++F     L AC N  ++        ++  ++    S +    L D+YA  G
Sbjct: 537 LRLNVFSITVALSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCG 591



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 215/437 (49%), Gaps = 41/437 (9%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           ++G  +EA+ +  EM  + ++    +   +L+ C +  D+ TG++IH+ +LK+   +  +
Sbjct: 42  KKGEIREALGLVTEMGSRNVRIGPEIYGEILQGCVYERDLSTGQQIHARILKNGDFYAKN 101

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVE 269
            ++ + L+  Y+KC ++E A+ +F ++  +++ +  A++    + GL   AL     ++E
Sbjct: 102 EYIETKLVIFYAKCDALEVAQLLFSKLRARNVFSWAAIIGVRCRIGLVEGALMGFVEMLE 161

Query: 270 EIGTPR--VKPNV------VTWNTLISG----FSKSG--DQVMVSKLFQLMRAK-GVEPD 314
               P   V PNV      + W+    G     +K+G  D V V+     M  K G+  D
Sbjct: 162 NGLFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDD 221

Query: 315 ------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                       VV+W +++ G V N  N EA      M ++G  PT  T+S+ L A A+
Sbjct: 222 ARKVFDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASAN 281

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H  AIV G+E D  + +++++ Y K G I  A  +FD+M E++ VTWN +
Sbjct: 282 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLL 341

Query: 423 IFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           I G    G  ++AI +  Q+  R  L  D ++ +++++A      ++LG+ +      ++
Sbjct: 342 ISGYVQQGLVEDAIHMC-QLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEV-QCYCIRH 399

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
             +      +  V++  + G + +A ++  + + E DL +W  LL A    G   L+  A
Sbjct: 400 GFVSDIVLASTAVEMYAKCGSIVDAKKVFNS-TVEKDLILWNTLLAAYAEPG---LSGEA 455

Query: 541 AKHLSELEPESAANNML 557
            +   E++ E    N++
Sbjct: 456 LRLFYEMQLEGVPPNVI 472


>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
          Length = 805

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/476 (31%), Positives = 264/476 (55%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T ++ FY +   I +A M+FD I   +I  W  L  
Sbjct: 267 GIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLIS 326

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G   +A+ +   M ++ L+ +   + +++ A     ++  G+++    ++HSF +
Sbjct: 327 GYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFES 386

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  + SS +DMY+KCGS+  AKKVF+   EKD++  N +++ Y   GL+ EAL L  ++ 
Sbjct: 387 EIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGEALKLFYDML 446

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PN++TWN++I  F ++G      ++F  M++ G+ P+++SWT++++G V N C++
Sbjct: 447 LESVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSE 506

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M   G  P + TIS  L AC    ++  G+ IHG  I        +   ++L
Sbjct: 507 EAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQHSSSVSFETSL 566

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VD+YAKCG I++A  +F           N+MI   A +G   E+I L+ ++E+   K D+
Sbjct: 567 VDLYAKCGDINQAEKVFGNKLYDELPLHNAMISAYALYGNVKESITLYRRLEDMAMKPDN 626

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT++L AC H G +     +F  M  K+ + P  EHY  MVD+L  +G   +A E+I+
Sbjct: 627 ITFTSLLYACTHAGDIVQAINIFTEMVSKHDMKPCLEHYGLMVDILASSGETNKALELIE 686

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  +  +L+ +C      EL +  ++ L E EPE++ N + +++ YA  G
Sbjct: 687 EMPYKPDARMIQSLVASCNKQHKTELVDYLSRQLLESEPENSGNYVTISNAYAIEG 742



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 152/534 (28%), Positives = 263/534 (49%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +G+ +HA+++ +G   AR   I TKL+ FY +C  +
Sbjct: 42  RNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDAL 101

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A+ LF  +   N+  W A+ G   R G  + A+  F EM   G+  + +V+P+V KAC
Sbjct: 102 EVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKAC 161

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  VLK       FV SSL DMY KCG ++ A+ VFDE+ E+++VA N
Sbjct: 162 GALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVAWN 221

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L+ ++    ++P  VT +T +S  +  G               
Sbjct: 222 ALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVN 281

Query: 295 ----DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + +             +++  + +  D+V+W  +ISG V     D+A    
Sbjct: 282 GLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYMC 341

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           K M  +     S T+S+++ A A   N+  GKE+   +I    E ++ + S+ VDMYAKC
Sbjct: 342 KLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKC 401

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVL 457
           G I +A+ +F+  +E++ + WN+++   A+ G   EA++LF  M  E    + +++ +++
Sbjct: 402 GSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNIITWNSII 461

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V+  + +F  MQ    I P    +  M++   + G   EA   ++ M     
Sbjct: 462 LSFLRNGQVDEAKEMFLQMQSS-GIFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGL 520

Query: 515 EPDLFVWGALLGACKNHGNIELAE-IAAKHLSELEPESAAN-NMLLTDLYANAG 566
            P+ F     L AC +  ++     I    +   +  S+ +    L DLYA  G
Sbjct: 521 RPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQHSSSVSFETSLVDLYAKCG 574



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/545 (22%), Positives = 243/545 (44%), Gaps = 113/545 (20%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++ +GL     +A+ L   Y +C  +  ARM+FDEIP+ N+  W AL   Y +
Sbjct: 170 GRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVAWNALMVGYVQ 229

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  +M  +G++     + + L A  ++  I  G++ H++ + +    D  +
Sbjct: 230 NGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNIL 289

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S+++ Y K G +E A+ +FD ++ KDIV  N ++SGYVQ+GL  +A+ + + +    +
Sbjct: 290 GTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENL 349

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           + + VT +TL+S  +++     G +V                     M +K   ++ AK 
Sbjct: 350 RYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKK 409

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     E D++ W ++++    +  + EA   F +ML +   P   T +SI+ +      
Sbjct: 410 VFESTAEKDLILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNIITWNSIILS------ 463

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER----NTVTWNS 421
                                        + + G + EA+ +F +M       N ++W +
Sbjct: 464 -----------------------------FLRNGQVDEAKEMFLQMQSSGIFPNLISWTT 494

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+ G   +G  +EAI    +M+E   + +  + +  L+AC H+  +  G+ +   +   +
Sbjct: 495 MMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNF 554

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEA----------------------------------Y 506
           +          +VDL  + G + +A                                  Y
Sbjct: 555 QHSSSVSFETSLVDLYAKCGDINQAEKVFGNKLYDELPLHNAMISAYALYGNVKESITLY 614

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELA-----EIAAKHLSELEPESAANNMLLTDL 561
             ++ M+ +PD   + +LL AC + G+I  A     E+ +KH  +++P    +  L+ D+
Sbjct: 615 RRLEDMAMKPDNITFTSLLYACTHAGDIVQAINIFTEMVSKH--DMKP-CLEHYGLMVDI 671

Query: 562 YANAG 566
            A++G
Sbjct: 672 LASSG 676



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 213/440 (48%), Gaps = 47/440 (10%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G  +EA+ +  EM  + ++    +   +L+ C +  D+ TG++IH+ +LK+   +  +
Sbjct: 25  KHGEIREALRLVKEMDFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGAFYARN 84

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVE 269
            ++ + L+  Y+KC ++E A+ +F  +  +++ +  A++    + GL   AL     ++E
Sbjct: 85  EYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEGALLGFVEMLE 144

Query: 270 EIGTPR--VKPNV------VTWNTLISGFS----KSG--DQVMVSKLFQLMRAK-GV--- 311
               P   V PNV      + W+    G      K+G  D V V+     M  K GV   
Sbjct: 145 NGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDD 204

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E +VV+W +++ G V N  N+EA     +M  +G  PT  T+S+ L A A+
Sbjct: 205 ARMVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASAN 264

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H  AIV G+E D  + +++++ Y K G I  A  +FD++  ++ VTWN +
Sbjct: 265 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLL 324

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G    G  D+A+ +   M  E  + D ++ + +++A      + LG+ +     + Y 
Sbjct: 325 ISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEV-----QCYS 379

Query: 482 IMPRTEHYACM----VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           I    E    +    VD+  + G + +A ++ ++ + E DL +W  LL A  + G   L+
Sbjct: 380 IRHSFESEIVLASSTVDMYAKCGSIVDAKKVFES-TAEKDLILWNTLLAAYADSG---LS 435

Query: 538 EIAAKHLSELEPESAANNML 557
             A K   ++  ES   N++
Sbjct: 436 GEALKLFYDMLLESVPPNII 455



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 117 TKLITFYTECQNIHHARM-----LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH 171
           T L+  Y +C +I+ A       L+DE+P  N     A+  AYA  G  +E++T++  + 
Sbjct: 564 TSLVDLYAKCGDINQAEKVFGNKLYDELPLHN-----AMISAYALYGNVKESITLYRRLE 618

Query: 172 IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFGTDAFVVSSLIDMYSKCGSV 230
              +K +     S+L AC H  DI     I + +V KH           ++D+ +  G  
Sbjct: 619 DMAMKPDNITFTSLLYACTHAGDIVQAINIFTEMVSKHDMKPCLEHYGLMVDILASSGET 678

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
            KA ++ +EM  K    M   +     +   TE ++ +          N   + T+ + +
Sbjct: 679 NKALELIEEMPYKPDARMIQSLVASCNKQHKTELVDYLSRQLLESEPENSGNYVTISNAY 738

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCNDE 333
           +  G    V K+ ++M+AKG++     SW  +    VH F  ++
Sbjct: 739 AIEGSWNEVMKMREMMKAKGLKKKPGCSWIQIKGEGVHVFVAND 782



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 8/250 (3%)

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           +L   +   P   S+   IS L  +    EA    KEM  +           IL  C   
Sbjct: 2   KLHHDRAGNPSSSSYFHQISSLCKHGEIREALRLVKEMDFRNVRIGPEIYGEILQGCVYE 61

Query: 364 ANMRRGKEIHGCAIVMGV--EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
            ++  G++IH   +  G     + ++ + L+  YAKC  +  A+ LF ++  RN  +W +
Sbjct: 62  RDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAA 121

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I      G C+ A+  F +M E   L D+     V  AC  +     G+ +   +  K 
Sbjct: 122 IIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYVL-KA 180

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            +       + + D+ G+ G L +A  M+     E ++  W AL+     +G   + E A
Sbjct: 181 GLHDCVFVASSLADMYGKCGVLDDA-RMVFDEIPERNVVAWNALMVGYVQNG---MNEEA 236

Query: 541 AKHLSELEPE 550
            + LS++  E
Sbjct: 237 IRLLSDMRKE 246


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 263/472 (55%), Gaps = 46/472 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA  + +GL     +  KL+    +  ++ +A  LFD+IPK +++ +      ++  
Sbjct: 5   KQIHAYSLRNGLDHTKFLIEKLL----QLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+      ++ +M  QG   N +    +  AC  L ++  G+ +HS   K  F +D F +
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAM 120

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L+DM                               Y + G+   A  L +E+      
Sbjct: 121 TALLDM-------------------------------YAKLGMLRSARQLFDEMPVR--- 146

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
            ++ TWN+LI+G+++SG      +LF  M  +    +V+SWT++ISG   N    +A + 
Sbjct: 147 -DIPTWNSLIAGYARSGHMEAALELFNKMPVR----NVISWTALISGYAQNGKYAKALEM 201

Query: 338 FKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
           F  + ++ G  P   +I+S+LPAC+    +  GK I   A   G   + +V +A+++++A
Sbjct: 202 FIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHA 261

Query: 397 KCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           +CG I EA+ +FD++ S+RN  +WN+MI G A HG C +A++L++QM  RK + D ++F 
Sbjct: 262 RCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFV 321

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L AC H G+V  G++LF  M+ K+++ P+ EHY C+VDLLGRAG L EAY +I+ M  
Sbjct: 322 GLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPM 381

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            PD  +WG LLGAC  HGN+EL E+AA+ L +LEP +  N ++L+++YA AG
Sbjct: 382 APDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAG 433



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 148/308 (48%), Gaps = 37/308 (12%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G++LH+    SG A      T L+  Y +   +  AR LFDE+P  +I  W +L   YAR
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160

Query: 157 RGYHQEAVTVFHEMHI--------------------------------QGLKQNIFVIPS 184
            G+ + A+ +F++M +                                +G K N   I S
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK- 243
           VL AC  L  +  G++I +    + F  +A+V +++++++++CG++E+A++VFDE+  K 
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKR 280

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           ++ + N M+ G    G   +AL L +++   +++P+ VT+  L+   +  G      +LF
Sbjct: 281 NLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLF 340

Query: 304 QLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           + M +K  V P +  +  ++  L       EA++  + M      P S    ++L AC+ 
Sbjct: 341 ESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNM---PMAPDSVIWGTLLGACSF 397

Query: 363 AANMRRGK 370
             N+  G+
Sbjct: 398 HGNVELGE 405



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 101/225 (44%), Gaps = 16/225 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALT 151
           AL  GK + A    +G  +   ++  ++  +  C NI  A+ +FDEI  K N+  W  + 
Sbjct: 230 ALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMI 289

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSF 210
              A  G   +A+ ++ +M I+ ++ +      +L AC H   +  G ++  S+  K   
Sbjct: 290 MGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQV 349

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS-----GYVQRG-LATE 263
                    L+D+  + G +++A  +   M +  D V    ++      G V+ G +A E
Sbjct: 350 APKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAE 409

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           +L  +E    P    N V  + +   ++ +GD   V++L ++M+ 
Sbjct: 410 SLFKLE----PWNPGNYVILSNI---YALAGDWSGVARLRKMMKG 447


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 256/472 (54%), Gaps = 57/472 (12%)

Query: 109 LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH 168
           L++ + +AT+++          HA  +F +IP  N+H   A+  AYA+   H++AV V+ 
Sbjct: 38  LSQSSYVATQIVHICNAHGRAAHAARVFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYV 97

Query: 169 EM-------HIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
            M          G    + F  P +LKACG L+    G ++H+ V +    + A V +SL
Sbjct: 98  RMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASRLGRQVHAHVARSGCESHAVVQNSL 157

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           I+MY++CG +  A+K FD M EKD                                   V
Sbjct: 158 IEMYTRCGDLSTARKAFDGMREKD-----------------------------------V 182

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVISGL--VHNFCNDEAFD 336
           V+WNTLIS  ++ G      +LF  M      PD  VVSWT+++SG   V +F    A +
Sbjct: 183 VSWNTLISAHARMGQMRRARELFYSM------PDKTVVSWTALVSGYTAVGDFTG--AVE 234

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F+ M  +GF P   +I ++LPACA    +  G+ I+      G+ G +++ +AL++MYA
Sbjct: 235 VFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYA 294

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFT 454
           KCG I EA  LF  MSE++ ++W++ I G A HG   EA+ LF  M+   ++  + ++F 
Sbjct: 295 KCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFV 354

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L+AC H GLV+ G R  + M+E Y + P  EHY C+VDLLGR+GR+  A + I+ M  
Sbjct: 355 GLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPV 414

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            PD  +WG+LL AC++HG++E A +AA+ L ELEP    N ++L ++Y  AG
Sbjct: 415 PPDGKIWGSLLSACRSHGDVETAVVAAERLVELEPGDVGNLVMLANVYGAAG 466



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 153/354 (43%), Gaps = 39/354 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIH-----------------------HAR 133
           G+ +HA +  SG      +   LI  YT C ++                        HAR
Sbjct: 135 GRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHAR 194

Query: 134 M--------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           M        LF  +P   +  W AL   Y   G    AV VF  M ++G + +   I +V
Sbjct: 195 MGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAV 254

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L AC  L  +  G  I++   KH      ++ ++L++MY+KCG +E+A ++F  M EKD+
Sbjct: 255 LPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDV 314

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGFSKSG--DQVMVSKL 302
           ++ +  + G    G A EA+ L E +    RV PN +T+  L+S  S +G  D+ +   L
Sbjct: 315 ISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGL-RYL 373

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
            Q+    GVEP V  +  V+  L  +     A DT + M      P      S+L AC S
Sbjct: 374 DQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVP---PDGKIWGSLLSACRS 430

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
             ++     +    +V    GD+     L ++Y   G   E  +   ++  R+T
Sbjct: 431 HGDVETAV-VAAERLVELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRST 483


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 182/516 (35%), Positives = 272/516 (52%), Gaps = 48/516 (9%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           + +AL+ G  LHA ++ +G      ++  ++  Y +C +   AR +FDE+ + N+  W A
Sbjct: 15  KTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSA 74

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y + G  Q A+ ++ +M    L  N +V  SV+ AC  LS +  G+KIHS  LK  
Sbjct: 75  MISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFG 131

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ-----RGL---- 260
           + + +FV +SLI MY KC     A  VF    E + V+ NA+++G+V+     RGL    
Sbjct: 132 YESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFK 191

Query: 261 ----------------------ATEALNLVEEIGTPRVKPNV----VTWNTLISGFSKSG 294
                                  TE L    E+    VK N+       N +I+ +S+  
Sbjct: 192 LMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELN 251

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA--FDTFKEMLSQ-GFCPTSA 351
                 K F+L+     E DV+SW ++I+   H  C+D A     FK M  +    P   
Sbjct: 252 LIQEAEKAFRLIE----EKDVISWNTLIAACSH--CDDHAKGLRVFKHMTEETNVRPDDF 305

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T +S L ACA  A+M  GK+IH   +   +  DL V +ALV+MYAKCG I  A  +F KM
Sbjct: 306 TFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKM 365

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ 470
              N V+WN++I G  NHG  + A+ELF QM     + D ++F  +LTAC H GLV+ GQ
Sbjct: 366 VHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQ 425

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
             FN M+E Y I P  EH++C++D+LGRAGRL EA E ++      D  V  +LL A + 
Sbjct: 426 LYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRL 485

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           HG++ + E  AK L +L+P + +  +LL++LYA+ G
Sbjct: 486 HGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDG 521



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 195/424 (45%), Gaps = 62/424 (14%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + S+L  C     +  G  +H+ VLK    +D F+ + +++MY+KCG    A++VFDEM 
Sbjct: 6   LSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMF 65

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG------------ 289
           EK++V+ +AM+SGY Q G    A++L  ++    + PN   + ++IS             
Sbjct: 66  EKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSAVTLGQK 122

Query: 290 --------------FSKSGDQVMVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFC 330
                         F  +    M  K  Q   A  V     EP+ VS+ ++I+G V N  
Sbjct: 123 IHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQ 182

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            +   + FK M  QG  P       +L  C +  N++RG E+H   + + ++    + + 
Sbjct: 183 LERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNV 242

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE---AIELFNQMEERKK 447
           ++ MY++   I EA   F  + E++ ++WN++I  C+   +CD+    + +F  M E   
Sbjct: 243 IITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACS---HCDDHAKGLRVFKHMTEETN 299

Query: 448 L--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA------CMVDLLGRA 499
           +  D  +FT+ L AC  +  +  G+++       +  + RT  Y        +V++  + 
Sbjct: 300 VRPDDFTFTSALAACAGLASMSHGKQI-------HAHLMRTRLYQDLGVGNALVNMYAKC 352

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG----NIELAEIAAKHLSELEPESAANN 555
           G +  AY++   M    +L  W  ++    NHG     +EL E    + S + P+S    
Sbjct: 353 GCIGYAYDIFSKM-VHHNLVSWNTIIAGFGNHGLGERAVELFE--QMNASGIRPDSVTFI 409

Query: 556 MLLT 559
            LLT
Sbjct: 410 GLLT 413



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 2/123 (1%)

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           + T+SS+L  C+    +R G  +H   +  G + D+ + + +++MYAKCG  + AR +FD
Sbjct: 3   TETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFD 62

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           +M E+N V+W++MI G    G    AI+L++QM      +   F +V++AC  +  V LG
Sbjct: 63  EMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVP--NEYVFASVISACASLSAVTLG 120

Query: 470 QRL 472
           Q++
Sbjct: 121 QKI 123


>gi|147797310|emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]
          Length = 666

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 184/556 (33%), Positives = 278/556 (50%), Gaps = 88/556 (15%)

Query: 99  ILHAQLIVSGLARLTQIATK------LITFYTECQNIHHARMLFDEIPK----------- 141
           +LHAQ + +  A+   +++       L+T Y+ C +   AR +FDEIP            
Sbjct: 53  LLHAQPLHADAAKRGFVSSDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMIS 112

Query: 142 -----------------------TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ----- 173
                                   N   W A+   YA+    ++A+ VF EM  +     
Sbjct: 113 CYFRESHCGAARELFDRMREAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMG 172

Query: 174 -GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKCGSV 230
             L      I SV  ACG L D+  GE+IH  V+K S     DAFV S ++DMY KCG  
Sbjct: 173 SPLSPMSHTITSVFSACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCGFE 232

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           E A+ VF  +V+K +V   A+++ YV       A+ +  E+    ++PN VT ++LIS  
Sbjct: 233 ELARFVFYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLISAC 292

Query: 291 SKSGDQVMVSKL--FQLMRAKGVEPDV--------------------------------- 315
           S+  D ++  ++  F   R     PDV                                 
Sbjct: 293 SQIPDLMLGKEIHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRCN 352

Query: 316 --VSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAANMRRGKEI 372
               W + I+G + N    +A+D F+ +   +G  P + T+S +LP CA ++ +  GKEI
Sbjct: 353 TTALWNATIAGYMENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCARSSQLLSGKEI 412

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGY 431
           H  A+  G++ ++ V + L+DMY+KCG +  A   F++M +E+N ++W SMI G   HG 
Sbjct: 413 HCYALRNGLDQEIFVSNGLIDMYSKCGKLKLAENQFNRMMNEKNRISWTSMIDGHGIHGD 472

Query: 432 CDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
            + AI +F  M  E  K DH++F A+++AC H GL+E G R F  M  +Y I+P  E+Y 
Sbjct: 473 GEGAIRVFESMVREEVKPDHITFVALISACSHAGLLEQGLRYFEEMSREYGIVPVEENYG 532

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
            +VDLL RAGR  EA ++I+ M  +P   VWGALLGAC+ HGN++ AE+AA  L +LEP+
Sbjct: 533 TVVDLLARAGRFKEARDLIERMPIKPGANVWGALLGACRIHGNVKEAELAAHCLQKLEPK 592

Query: 551 SAANNMLLTDLYANAG 566
            +    LL  +Y  AG
Sbjct: 593 DSGFQKLLASIYLEAG 608



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 173/376 (46%), Gaps = 40/376 (10%)

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI-PSVLKACGHLSDIGTGEKIHSLVLK 207
           AL   Y+ +G  +E    +H++  QG + N F     +       S +   + +H+   K
Sbjct: 6   ALLILYSEQGKWRELTAFYHQIRKQGFEPNSFTFSSLLKCLSSSQSPLLHAQPLHADAAK 65

Query: 208 HSF-GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
             F  +D FV + L+ +YS+CGS + A+K+FDE+        N M+S Y +      A  
Sbjct: 66  RGFVSSDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRESHCGAARE 125

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           L + +    +  N VTW+ +I+G++++        +F+ MR +                 
Sbjct: 126 LFDRMREAHLA-NDVTWSAVIAGYAQNSRPKDALFVFKEMRGE----------------- 167

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG--VEGD 384
              C++         +     P S TI+S+  AC    ++  G++IHG  + +   VE D
Sbjct: 168 ---CDE---------MGSPLSPMSHTITSVFSACGQLRDVILGEQIHGYVMKISSYVEND 215

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAIELFNQM 442
             V S +VDMY KCGF   AR +F  + ++  V W ++I  + C N   C  AIE+F +M
Sbjct: 216 AFVGSVVVDMYGKCGFEELARFVFYSIVDKCVVVWTALIASYVC-NECPC-PAIEVFREM 273

Query: 443 -EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM-QEKYKIMPRTEHYACMVDLLGRAG 500
             E  + + ++ +++++AC  +  + LG+ +   + + +    P       ++D+ G+  
Sbjct: 274 IYEGMEPNCVTLSSLISACSQIPDLMLGKEIHGFITRRRAATTPDVFISTSLIDMYGKCN 333

Query: 501 RLAEAYEMIKTMSTEP 516
            +   + + +   T P
Sbjct: 334 YMVYGHRIFEKDKTYP 349



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 72/160 (45%), Gaps = 16/160 (10%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE-IPKTNIHRWI 148
           R   L SGK +H   + +GL +   ++  LI  Y++C  +  A   F+  + + N   W 
Sbjct: 402 RSSQLLSGKEIHCYALRNGLDQEIFVSNGLIDMYSKCGKLKLAENQFNRMMNEKNRISWT 461

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS----- 203
           ++   +   G  + A+ VF  M  + +K +     +++ AC H   +  G +        
Sbjct: 462 SMIDGHGIHGDGEGAIRVFESMVREEVKPDHITFVALISACSHAGLLEQGLRYFEEMSRE 521

Query: 204 ---LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
              + ++ ++GT       ++D+ ++ G  ++A+ + + M
Sbjct: 522 YGIVPVEENYGT-------VVDLLARAGRFKEARDLIERM 554


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 286/546 (52%), Gaps = 71/546 (13%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR--------------- 133
           I +R L +GK LH+  I S +   T  +   I  Y++C  +  AR               
Sbjct: 19  IAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFN 78

Query: 134 ----------------MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
                            LFD+IP+ ++  +  L  AYA  G    A+ +F  M   GL  
Sbjct: 79  AIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDM 138

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           + F + +V+ AC    D+G   ++HS+ +   F +   V ++L+  Y K G ++ AK+VF
Sbjct: 139 DGFTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVF 196

Query: 238 DEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS----- 291
             M   +D V+ N+M+  Y Q    ++AL L +E+    +  ++ T  ++++ F+     
Sbjct: 197 YGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDL 256

Query: 292 -----------KSG---DQVMVSKLFQLMRAKG-------------VEPDVVSWTSVISG 324
                      K+G   +  + S L  L    G              EPD+V W +++SG
Sbjct: 257 SGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316

Query: 325 LVHN--FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
              N  F  D A + F++M   G+ P   +   ++ AC++ ++  +GK+IH  A+   + 
Sbjct: 317 YSQNEEFLED-ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIP 375

Query: 383 GD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
            + + V +AL+ MY+KCG + +AR LFD+M+E NTV+ NSMI G A HG   E++ LF  
Sbjct: 376 SNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQW 435

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M ER+     ++F +VL+AC H G VE G   FNMM+EK+ I P  EHY+CM+DLLGRAG
Sbjct: 436 MLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAG 495

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           +L+EA  +I  M   P    W +LLGAC+ HGNIELA  AA  + +LEP +AA  ++L++
Sbjct: 496 KLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSN 555

Query: 561 LYANAG 566
           +YA+AG
Sbjct: 556 MYASAG 561



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 166/326 (50%), Gaps = 10/326 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALTG 152
           L  G   H QLI +G  + + + + LI  Y++C   +   R +F+EI + ++  W  +  
Sbjct: 256 LSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVS 315

Query: 153 AYAR-RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            Y++   + ++A+  F +M   G + N      V+ AC +LS    G++IHSL LK    
Sbjct: 316 GYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIP 375

Query: 212 TDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           ++   V ++LI MYSKCG+++ A+++FD M E + V++N+M++GY Q G+  E+L+L + 
Sbjct: 376 SNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQW 435

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNF 329
           +   ++ P  +T+ +++S  + +G        F +M+ K  +EP+   ++ +I  L    
Sbjct: 436 MLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAG 495

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVR 388
              EA +    M    F P S   +S+L AC +  N+     +     V+ +E  +    
Sbjct: 496 KLSEAENLIARM---PFNPGSIGWASLLGACRTHGNIELA--VKAANQVLQLEPSNAAPY 550

Query: 389 SALVDMYAKCGFISEARTLFDKMSER 414
             L +MYA  G   E  T+   M +R
Sbjct: 551 VVLSNMYASAGRWEEVATVRKFMRDR 576



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 46/344 (13%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +LK C    D+ TG+ +HSL +K       +  +  I +YSKCG +  A+K F ++ + +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           + + NA+++ Y +      A  L ++I     +P++V++NTLIS ++  G+      LF 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQI----PEPDLVSYNTLISAYADCGETAPALGLFS 129

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            MR  G++ D                              GF     T+S+++ AC    
Sbjct: 130 GMREMGLDMD------------------------------GF-----TLSAVITACCDDV 154

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMI 423
            +    ++H  A+  G +  + V +AL+  Y K G + +A+ +F  M   R+ V+WNSMI
Sbjct: 155 GLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMI 212

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVEL-GQRLFNMMQEKYK 481
                H    +A+ LF +M  R   +D  +  +VLTA     L +L G   F+    K  
Sbjct: 213 VAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA--FTCLEDLSGGLQFHGQLIKTG 270

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
               +   + ++DL  + G        +    TEPDL +W  ++
Sbjct: 271 FHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMV 314



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 37/209 (17%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR---------- 405
           +L  C +  ++  GK +H   I   +    +  +  + +Y+KCG ++ AR          
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 406 ---------------------TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
                                 LFD++ E + V++N++I   A+ G    A+ LF+ M E
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 445 RK-KLDHLSFTAVLTACC-HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
               +D  + +AV+TACC  VGL+  GQ     +   +       +   ++   G+ G L
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNN--ALLTYYGKNGDL 189

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNH 531
            +A  +   M    D   W +++ A   H
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQH 218


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 163/514 (31%), Positives = 266/514 (51%), Gaps = 33/514 (6%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           ++  +R      G+ LH  ++ +G   L  +   L+  Y +  ++ +AR +FD IP  N+
Sbjct: 135 LKAAVRSADFGYGRRLHCDVVKAGGGDLF-VMNNLVDMYAKGGDLKNARKVFDRIPDRNV 193

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W ++     + G  +E + +F+EM  + +  + + + SVL AC  L  +  G  IH  
Sbjct: 194 VSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGS 253

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V+KH   ++ F+ ++++DMY KCG  E A++VFDE+   D+V    M+ GY Q G   +A
Sbjct: 254 VMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDA 313

Query: 265 LNLVEEIGTPRVKPNVVTWNTLIS----------GFSKSGDQV----------------M 298
           L L  +    R+ PN VT  T++S          G S  G  V                M
Sbjct: 314 LLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDM 373

Query: 299 VSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
            +K   L  AKG+       DVV+W S+I+G   N    +A   F  M  QG  P + ++
Sbjct: 374 YAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISV 433

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            + L AC    ++  GK  H  A+      +++V +AL+++Y KC  +  A+ +F +M++
Sbjct: 434 VNALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMND 493

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           RNTVTW +MI G    G    +I+LFN+M ++  + +   FT++L+ C H G+V +G++ 
Sbjct: 494 RNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKC 553

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F  M   + I P  +HYACMVD+L RAG L EA E I+ M  + D  +W A L  CK H 
Sbjct: 554 FESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHS 613

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +E AE A   +  L P++    +++++LY + G
Sbjct: 614 RLEFAEEAVNRMMVLHPDTPDFCVMMSNLYTSYG 647



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 241/475 (50%), Gaps = 39/475 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L S + LHA+L+  GL R  +  TKL++ Y    ++  AR + DE P  + + +    G 
Sbjct: 41  LPSLRALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDAYTYKVALGW 100

Query: 154 YARRGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           +A  G H EAV V  +M  +    ++++ V+   LKA    +D G G ++H  V+K + G
Sbjct: 101 HAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLHCDVVK-AGG 159

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D FV+++L+DMY+K G ++ A+KVFD + ++++V+  +M+SG +Q GLA E L L  E+
Sbjct: 160 GDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEM 219

Query: 272 GTPRVKPNVVTWNTLISGFSKSGD-------------QVMVSKLFQL-----MRAKGVEP 313
               + P+  T  +++   +  G                +VS  F       M  K  E 
Sbjct: 220 RQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEA 279

Query: 314 -------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                        D+V WT++I G   N    +A   F +       P S TI+++L A 
Sbjct: 280 EDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSAS 339

Query: 361 ASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           A   N+  G+ IHG ++ +G VE D+ V +ALVDMYAKC  +S+A+ +F ++  ++ VTW
Sbjct: 340 AQLRNLSLGRSIHGISVKLGAVENDV-VMNALVDMYAKCKALSDAKGIFGRVLNKDVVTW 398

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NS+I G A +    +A+ LF+ M  +  L D +S    L+AC  +G + +G + F+    
Sbjct: 399 NSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIG-KCFHTYAV 457

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           K+  M        +++L  +   L  A  +   M+ + +   WGA++G     G+
Sbjct: 458 KHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMN-DRNTVTWGAMIGGYGMQGD 511


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 250/474 (52%), Gaps = 40/474 (8%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I +A  +F+ I K     +  +    A +     A+ +F +MH + ++ + F   SVLKA
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  +  +  GE++H+L+LK  F ++ FV ++LI MY+ CG +  A+ VFD M E+ IVA 
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------- 283
           N+M+SGY + GL  E + L  +I   R++ + VT                          
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVS 250

Query: 284 ----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                      +LI  ++K G      KLF  M  +    DVV+W+++ISG        E
Sbjct: 251 KGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKR----DVVAWSAMISGYAQADRCKE 306

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A + F EM      P   T+ S+L +CA       GK +H       ++  + + + L+D
Sbjct: 307 ALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLID 366

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
            YAKCG+I  +  +F +MS +N  TW ++I G AN+G    A+E F+ M E   K + ++
Sbjct: 367 FYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVT 426

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  VL+AC H  LV+ G+ LFN M+  + I PR EHY CMVD+LGRAG L EAY+ I  M
Sbjct: 427 FIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNM 486

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              P+  VW  LL +C+ H NIE+AE + +H++ LEP  + + +LL++ YA  G
Sbjct: 487 PFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVG 540



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 204/435 (46%), Gaps = 57/435 (13%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R +AL+ G+ +HA ++ SG      +   LI  Y  C  I  AR +FD +P+ +I  W +
Sbjct: 133 RMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNS 192

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y + G   E V +F ++    ++ +   + SVL ACG L+++  GE I   ++   
Sbjct: 193 MLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKG 252

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +  + +SLIDMY+KCG V+ A+K+FDEM ++D+VA +AM+SGY Q     EALNL  
Sbjct: 253 LRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFH 312

Query: 270 EIGTPRVKPNVVT------------------W-----------------NTLISGFSKSG 294
           E+    V PN VT                  W                   LI  ++K G
Sbjct: 313 EMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCG 372

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                 ++F+ M  K    +V +WT++I GL +N     A + F  ML     P   T  
Sbjct: 373 YIDRSVEVFKEMSFK----NVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFI 428

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVR----SALVDMYAKCGFISEARTLFDK 410
            +L AC+ A  + +G+ +      M  + D+  R      +VD+  + GF+ EA    D 
Sbjct: 429 GVLSACSHACLVDQGRHLFNS---MRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDN 485

Query: 411 MS-ERNTVTWNSMIFGCANHG---YCDEAIELFNQMEERKKLDH--LSFTAVLTACCHVG 464
           M    N V W +++  C  H      ++++E   ++E     D+  LS T  L     VG
Sbjct: 486 MPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYAL-----VG 540

Query: 465 LVELGQRLFNMMQEK 479
            VE   R+ ++++EK
Sbjct: 541 RVEDAIRVRSLIKEK 555


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 269/510 (52%), Gaps = 42/510 (8%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            AL  G+ LH  ++ +G+     + + L++ Y++C N   A   F E+   +I  W ++  
Sbjct: 582  ALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMIS 641

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            AY+R G+  E + +F EM + G+  +  VI  +L +  +   +   +  H L+++  +  
Sbjct: 642  AYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTL 701

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            D  V ++L+ MY K G ++ A+K F  + E++  A N MVSGY + GL  + + L  E+ 
Sbjct: 702  DQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQ 761

Query: 273  TPRVK-----------------------------------PNVVTWNTLISGFSKSGDQV 297
               ++                                    NV   N+LI  + KSG+  
Sbjct: 762  CLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLT 821

Query: 298  MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
            +  ++F       +  D+V+W ++IS   H     EA   + +M+ +   P SAT+  +L
Sbjct: 822  IARRIFCR-----IPRDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVL 876

Query: 358  PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             AC+  A++  G+++H        E +L + +AL+DMYAKCG + ++R +F+ M ER+ +
Sbjct: 877  SACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVI 936

Query: 418  TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            TWN MI G   HG    AIE F QMEE   K + L+F AVL+AC H GLV+ G+ LF  M
Sbjct: 937  TWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKM 996

Query: 477  QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            Q+ Y + P  +HYACMVDLLGR+G L EA  ++ +M   PD  VWGALL +CK H  IE+
Sbjct: 997  QD-YSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEM 1055

Query: 537  AEIAAKHLSELEPESAANNMLLTDLYANAG 566
                AKH    + E+    ++++++Y++ G
Sbjct: 1056 GIRIAKHAIXSDVENDGYYVMISNMYSSIG 1085



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 204/428 (47%), Gaps = 38/428 (8%)

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
           E +   H +   G + N   +    +ACG+L  +  G  +H LV+K        V SSL+
Sbjct: 550 ECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLL 609

Query: 222 DMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281
            MYSKCG+ E+A + F E++ KDI++  +M+S Y + G ATE +++  E+    + P+ +
Sbjct: 610 SMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGI 669

Query: 282 TWNTLISGFSKSG-------------------DQVMVSKLFQLMRAKGV----------- 311
             + ++S FS S                    DQ++ + L  +    G            
Sbjct: 670 VISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRV 729

Query: 312 -EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
            E +  +W  ++SG        +    F+EM   G    S ++ S++ +C+        +
Sbjct: 730 NEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLAR 789

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            IH   I   ++ ++ V ++L+DMY K G ++ AR +F ++  R+ VTWN++I   A+ G
Sbjct: 790 SIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCG 848

Query: 431 YCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
           +  EA+ L+++M  E  K +  +   VL+AC H+  +E G+++ N +    K        
Sbjct: 849 HFAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGG-KFEFNLSIA 907

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
             ++D+  + G+L ++ E+  +M  E D+  W  ++     HG+   A  A +   ++E 
Sbjct: 908 TALIDMYAKCGQLEKSREIFNSMH-ERDVITWNVMISGYGMHGD---ARSAIEXFQQMEE 963

Query: 550 ESAANNML 557
            SA  N L
Sbjct: 964 SSAKPNGL 971



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 156/317 (49%), Gaps = 9/317 (2%)

Query: 100  LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
            +H  +I + +     +   LI  Y +  N+  AR +F  IP+ +I  W  L  +YA  G+
Sbjct: 791  IHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIPR-DIVTWNTLISSYAHCGH 849

Query: 160  HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
              EA++++ +M ++ LK N   +  VL AC HL+ +  GEK+H+ +    F  +  + ++
Sbjct: 850  FAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATA 909

Query: 220  LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
            LIDMY+KCG +EK++++F+ M E+D++  N M+SGY   G A  A+   +++     KPN
Sbjct: 910  LIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPN 969

Query: 280  VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS--GLVHNFCNDEAFDT 337
             +T+  ++S  + +G       LF  M+   V P++  +  ++   G   N    EA   
Sbjct: 970  GLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVDLLGRSGNLQEAEAL-- 1027

Query: 338  FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
               +LS    P      ++L +C     +  G  I   AI   VE D +    + +MY+ 
Sbjct: 1028 ---VLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIXSDVENDGYY-VMISNMYSS 1083

Query: 398  CGFISEARTLFDKMSER 414
             G   EA      M ER
Sbjct: 1084 IGKWEEAEKARGIMKER 1100



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 103/277 (37%), Gaps = 54/277 (19%)

Query: 172 IQGLKQNIFVIPSV------LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYS 225
           IQ LK+N    P V      L  C   +D+ T EK+   + K     D    SSL ++Y 
Sbjct: 215 IQELKKN--TSPDVVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVTYSSLTNLYI 272

Query: 226 KCGSVEKAKKVFDE----------------------MVEKDIV------------AMN-- 249
           K G ++KA    +E                      M +KD V             MN  
Sbjct: 273 KKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKKLKSIFHKMNDA 332

Query: 250 ---AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
               M+S  V+ G   EA NL  E  +     +    N L++ +    +  M  K +  M
Sbjct: 333 EYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNEMEMAEKFYNQM 392

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS--QGFCPTSATISSILPACASAA 364
             +G+ P   +W  +  G +     ++  D F++ +   + + P    +  +        
Sbjct: 393 VERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKAVGSVKKWNPDEKLVREVYKNLEEQG 452

Query: 365 NMRRGKEIHGCAIVMGVEGDL--HVRSALVDMYAKCG 399
           N+   +++    +++   G +   + + L+  YAK G
Sbjct: 453 NIEGAEKV---LVILRKAGHVSTEIYNWLLRAYAKAG 486



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 101/226 (44%), Gaps = 7/226 (3%)

Query: 191 HLSDIGTGEKIHSLV--LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKD 244
           ++SD G  EK+  ++  LK +   D    +  + + +    VE A+KV  E+    ++ D
Sbjct: 202 YISD-GQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPD 260

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
            V  +++ + Y+++GL  +A   + E+     +   + +++LIS  +   D+  V ++++
Sbjct: 261 WVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWK 320

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +++   + +   +T +IS LV     +EA + + E  S      S   + +L A  +  
Sbjct: 321 KLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKN 380

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
            M   ++ +   +  G+         L   Y K   + +    F+K
Sbjct: 381 EMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEK 426


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 173/478 (36%), Positives = 254/478 (53%), Gaps = 53/478 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYT---ECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           +HAQ+I + L       ++LI F +       + +A  +F  I   N   + AL   ++ 
Sbjct: 25  IHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSD 84

Query: 157 RGYHQEAVTVFHEM-----HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
                E++ ++  M     +  G++   F IPSVLKACG L     G ++H  VLK    
Sbjct: 85  TSNPVESLILYARMLSCLNYSSGVE---FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLW 141

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D FV +S++ MY   G +E A++VFD M  +D                           
Sbjct: 142 FDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD--------------------------- 174

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                   VV+WN++I+G+ K+G+  +  K+F+ M  K    DVV+WTS+IS  V N C 
Sbjct: 175 --------VVSWNSMIAGYLKAGEIELAKKVFETMSDK----DVVTWTSMISAYVQNRCP 222

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSA 390
            +A D F+EMLS G  P    I S+L A A    +  GK +H    +  +E     + SA
Sbjct: 223 MKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSA 282

Query: 391 LVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           L+DMY+KCG+I  A  +F  +S  RN   WNSMI G A HG   EA+++F +ME    + 
Sbjct: 283 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 342

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           + ++F  +L+ C H GLVE GQ  F  M EKYKI+PR +HY CM+DL GRAGRL +A  +
Sbjct: 343 NEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV 402

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I+ M  E DL  W A+L A   HG+IE+ + AA    EL P+ +++ +LL+++YA AG
Sbjct: 403 IQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAG 460



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 33/235 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A   G+ +H Q++ + L     +   ++  Y +   I  AR +FD +P  ++  W ++  
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIA 183

Query: 153 AYARRG--------------------------YHQ-----EAVTVFHEMHIQGLKQNIFV 181
            Y + G                          Y Q     +A+ +F EM   GL+ +   
Sbjct: 184 GYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPA 243

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           I SVL A   L  +  G+ +H+ V  +    +  F+ S+LIDMYSKCG +E A  VF  +
Sbjct: 244 IVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSI 303

Query: 241 V-EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
              ++I   N+M+SG    GLA EAL++  E+    ++PN +T+  L+S  S  G
Sbjct: 304 SHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGG 358



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 121/254 (47%), Gaps = 17/254 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALT 151
           ++ GK LHA + ++ +   +  I + LI  Y++C  I +A  +F  I  + NI  W ++ 
Sbjct: 257 VEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMI 316

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSF 210
              A  G  +EA+ +F EM    ++ N      +L  C H   +  G+    S+  K+  
Sbjct: 317 SGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKI 376

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS-----GYVQRGLATEA 264
                    +ID++ + G +E A  V   M  E D++A  A++S     G+++ G  + A
Sbjct: 377 VPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIG-KSAA 435

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           L  +E      + P+  +   L+S  ++K+G    V+K+  +MR +GV+      + +++
Sbjct: 436 LRAIE------LAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVN 489

Query: 324 GLVHNFCNDEAFDT 337
           G VH F   +  D+
Sbjct: 490 GKVHEFLLGKELDS 503


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 266/484 (54%), Gaps = 32/484 (6%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + + L+  Y +   +  AR +FD +P+ N   W  +   YA +    EA  VF  M  + 
Sbjct: 148 VGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREE 207

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
              N F   SVL A      + +G++IH L +K        ++++L+ MY+KCGS++ + 
Sbjct: 208 EDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSL 267

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--- 291
           +VF+   +K+ +  +AM++GY Q G + +AL L   +    + P+  T   +++  S   
Sbjct: 268 QVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDAC 327

Query: 292 --KSGDQV--------------MVSKLFQLMRAKGV------------EPDVVSWTSVIS 323
             + G QV              +++ L  +    GV            +PD+V WTS+I+
Sbjct: 328 AVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIA 387

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G V N  N++A   +  M  +G  P   T++S+L AC++ A   +G++IH   I  G+  
Sbjct: 388 GYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGL 447

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           ++ + SAL  MYAKCG + E   +F +M ER+ ++WN+MI G + +GY  EA+ELF +M 
Sbjct: 448 EVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMR 507

Query: 444 ERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           ++  K D ++F  VL+AC H+GLV+ G   F MM +++ ++P+ EHYACMVD+L RAG+L
Sbjct: 508 QQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKL 567

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            EA E I++ + +  L +W  LLGAC+N+ N EL   A + L EL  + ++  +LL+ +Y
Sbjct: 568 YEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIY 627

Query: 563 ANAG 566
              G
Sbjct: 628 TALG 631



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 235/480 (48%), Gaps = 37/480 (7%)

Query: 88  YIRDRALQSGKILHAQLI-VSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHR 146
           +   ++LQ G+ LHAQ+I ++  +    +A  LI FY +C ++  A+++FD I   ++  
Sbjct: 17  FTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVIS 76

Query: 147 WIALTGAYARRGYHQEA--VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
           W  L   Y+++G    +  + +F  M    +  N      +  A  +LS I  G++ H++
Sbjct: 77  WNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAV 136

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            +K +   D FV SSL++MY K G + +A++VFD M E++ V    M+SGY  + LA EA
Sbjct: 137 AIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEA 196

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISG-----FSKSGDQ-----------VMVSKLFQL--M 306
             + E +       N   + +++S      F  SG Q           V +S L  L  M
Sbjct: 197 FEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTM 256

Query: 307 RAK-------------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
            AK               + + ++W+++I+G   +  + +A   F  M   G  P+  T+
Sbjct: 257 YAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTL 316

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
             +L AC+ A  +  GK++H   + +G E  L++ +ALVDMYAK G   +AR  F+ + +
Sbjct: 317 VGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQ 376

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL 472
            + V W SMI G   +G  ++A+ L+ +M+    L + L+  +VL AC ++   + G+++
Sbjct: 377 PDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQI 436

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            +    KY +       + +  +  + G L E   + + M  E D+  W A++     +G
Sbjct: 437 -HARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRM-PERDIISWNAMISGLSQNG 494



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 113/202 (55%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ GK +H  L+  G      I T L+  Y +      AR  F+ + + ++  W ++  
Sbjct: 328 AVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIA 387

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G +++A++++  M ++G+  N   + SVLKAC +L+    G +IH+  +K+  G 
Sbjct: 388 GYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGL 447

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  + S+L  MY+KCG++E+   VF  M E+DI++ NAM+SG  Q G   EAL L EE+ 
Sbjct: 448 EVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMR 507

Query: 273 TPRVKPNVVTWNTLISGFSKSG 294
               KP+ VT+  ++S  S  G
Sbjct: 508 QQDTKPDDVTFVNVLSACSHMG 529



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 128/253 (50%), Gaps = 9/253 (3%)

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF--DTFKEM 341
           N+LI+ ++K         +F  +  K    DV+SW  +I+G         +F  + F+ M
Sbjct: 47  NSLINFYAKCCHLPKAKLVFDRIHNK----DVISWNCLINGYSQQGPTGSSFVMELFQRM 102

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
            +    P + T S I  A ++ +++  G++ H  AI M    D+ V S+L++MY K G +
Sbjct: 103 RADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLL 162

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTAC 460
            EAR +FD+M ERN VTW +MI G A      EA E+F  M  E + ++  +FT+VL+A 
Sbjct: 163 FEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSAL 222

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
                V+ G+++ + +  K  ++        +V +  + G L ++ ++ + MS + +   
Sbjct: 223 AVPEFVDSGKQI-HCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFE-MSNDKNSIT 280

Query: 521 WGALLGACKNHGN 533
           W A++      G+
Sbjct: 281 WSAMITGYAQSGD 293



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 29/283 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A   G+ +HA+ I  GL     I + L T Y +C N+    ++F  +P+ +I  W A+  
Sbjct: 429 AFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMIS 488

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             ++ GY +EA+ +F EM  Q  K +     +VL AC H+  + +G  ++  ++   FG 
Sbjct: 489 GLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSG-WLYFRMMFDEFGL 547

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG----YVQRGLATEALN 266
              V   + ++D+ S+ G + +AK+  +       + +  ++ G    Y    L   A  
Sbjct: 548 LPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGE 607

Query: 267 LVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVIS 323
            + E+G+      V     L+SG ++  G    V ++  +M+ +GV  EP   SW  + S
Sbjct: 608 KLMELGSQESSAYV-----LLSGIYTALGRPEDVERVRSMMKVRGVSKEPG-CSWIELKS 661

Query: 324 GLVHNFC------------NDEAFDTFKEMLSQGFCPTSATIS 354
             VH F               E     K+M  +G+ P S T S
Sbjct: 662 N-VHVFVVGDQMHPCIGEIRTEILRLSKQMKDEGYQPASVTDS 703


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 171/517 (33%), Positives = 273/517 (52%), Gaps = 52/517 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+S + +H     +GL     ++T L+  Y +C +  HA  +F  +P  ++  W A+   
Sbjct: 145 LRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAG 204

Query: 154 YARRGYHQEAVT---VFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK--- 207
           YA  G + + +    +  + H       + ++P +L   G LS    G  +H+  ++   
Sbjct: 205 YALHGKYSDTIACLLLMQDDHAPNASTLVALLP-LLAQHGALSQ---GRAVHAYSVRACS 260

Query: 208 -HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
            H       V ++L+DMY+KCG +  A +VF+ M  ++ V  +A+V G+V  G   EA +
Sbjct: 261 LHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFS 320

Query: 267 LVEEI---GTPRVKP---------------------------------NVVTWNTLISGF 290
           L +++   G   + P                                 ++   N+L+S +
Sbjct: 321 LFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMY 380

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +K+G     + LF  M  K    D VS+++++SG V N   DEAF  F++M +    P  
Sbjct: 381 AKAGLIDQATTLFDQMVVK----DTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDV 436

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           AT+ S++PAC+  A ++ GK  HG  IV G+  +  + +AL+DMYAKCG I  +R +FD 
Sbjct: 437 ATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDV 496

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELG 469
           M  R+ V+WN+MI G   HG   EA  LF  M+ +  + D ++F  +++AC H GLV  G
Sbjct: 497 MPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEG 556

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
           +R F+MM  KY I PR EHY  MVDLL R G L EAY+ I+ M  + D+ VWGALLGAC+
Sbjct: 557 KRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACR 616

Query: 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            H NI+L +  +  + +L PE   N +LL+++++ AG
Sbjct: 617 VHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAG 653



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 215/449 (47%), Gaps = 50/449 (11%)

Query: 126 CQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           C ++  AR LFD+IP   IH + AL  AY+ RG              +  + N +  P V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           LKAC  L D+ +   +H    +     D FV ++L+D+Y+KC S   A  VF  M  +D+
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 246 VAMNAMVSGYVQRGLATEA---LNLVEEIGTPRV-------------------------- 276
           VA NAM++GY   G  ++    L L+++   P                            
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 277 ---------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                    K  V+    L+  ++K G  V  S++F+ M  +    + V+W++++ G V 
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR----NEVTWSALVGGFV- 310

Query: 328 NFCND--EAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
             C    EAF  FK+ML+QG C  S T ++S L ACA+ +++  GK++H      G+  D
Sbjct: 311 -LCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTD 369

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           L   ++L+ MYAK G I +A TLFD+M  ++TV++++++ G   +G  DEA  +F +M+ 
Sbjct: 370 LTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQA 429

Query: 445 -RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              + D  +  +++ AC H+  ++ G+     +  +  I   T     ++D+  + GR+ 
Sbjct: 430 CNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRID 488

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            + ++   M    D+  W  ++     HG
Sbjct: 489 LSRQIFDVMPAR-DIVSWNTMIAGYGIHG 516



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 10/312 (3%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LSP + +  +        L  GK LHA L  SGL         L++ Y +   I  A  L
Sbjct: 333 LSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTL 392

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FD++   +   + AL   Y + G   EA  VF +M    ++ ++  + S++ AC HL+ +
Sbjct: 393 FDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAAL 452

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G+  H  V+     ++  + ++LIDMY+KCG ++ ++++FD M  +DIV+ N M++GY
Sbjct: 453 QHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGY 512

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPD 314
              GL  EA  L  ++     +P+ VT+  LIS  S SG      + F +M  K G+ P 
Sbjct: 513 GIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPR 572

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI---SSILPACASAANMRRGKE 371
           +  +  ++  L      DEA+   + M      P  A +    ++L AC    N+  GK+
Sbjct: 573 MEHYIGMVDLLARGGFLDEAYQFIQGM------PLKADVRVWGALLGACRVHKNIDLGKQ 626

Query: 372 IHGCAIVMGVEG 383
           +      +G EG
Sbjct: 627 VSSMIQQLGPEG 638



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 17/221 (7%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P + T   +L AC++  ++R  + +H  A   G+  DL V +ALVD+YAKC     A T+
Sbjct: 127 PNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATV 186

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467
           F +M  R+ V WN+M+ G A HG   + I     M++    +  +  A+L      G + 
Sbjct: 187 FRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALS 246

Query: 468 LGQ-------RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            G+       R  ++   K  ++  T     ++D+  + G L  A  + + M+   ++  
Sbjct: 247 QGRAVHAYSVRACSLHDHKDGVLVGTA----LLDMYAKCGHLVYASRVFEAMAVRNEV-T 301

Query: 521 WGALLGACKNHGNIELA-----EIAAKHLSELEPESAANNM 556
           W AL+G     G +  A     ++ A+ L  L P S A+ +
Sbjct: 302 WSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASAL 342


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 265/475 (55%), Gaps = 18/475 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+ +G+ LH   + +GL     + + L++ Y++C N+  A   F ++   ++  W ++ G
Sbjct: 250 AMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIG 309

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             AR G+  E + +F +M +  +  +  V+  +L   G+   +  G+  H L+++ ++  
Sbjct: 310 VCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVL 369

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L+ MY K G++  A+K+FD + E    + N MV GYV   +   +        
Sbjct: 370 DDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNS-------- 421

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V  +V   N+LI  + K G+  +  K+F        + DVV+W ++IS   H+    
Sbjct: 422 ---VDEDVSIANSLIDMYGKGGNLSIAWKMFCR-----TQRDVVTWNTLISSYTHSGHYA 473

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F EM+S+   P SAT+  +L AC    ++ +GK +H      G E ++ + +ALV
Sbjct: 474 EAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALV 533

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           DMYAKCG + ++R LF+ M E++ ++WN MI G   HG  + A+E+F QME+   K + +
Sbjct: 534 DMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAI 593

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F ++L+AC H G V+ G++LF+ MQ  Y I P  +H+ACM DLLGR+G L EA +++++
Sbjct: 594 TFLSLLSACTHAGYVDEGKQLFDRMQ-YYSIKPNLKHFACMADLLGRSGNLQEAEDLVQS 652

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M   PD  VWG LL ACK H  IE+    AK   E +PE+    ++L+++Y + G
Sbjct: 653 MPICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMYGSMG 707



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 141/578 (24%), Positives = 238/578 (41%), Gaps = 99/578 (17%)

Query: 73  SFHLSPAAYSERIEIYIRDRA--LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S+H S    +  I+ ++ ++   LQS    HA +I +G A    I++KLI+ Y   +  H
Sbjct: 22  SYHSSSNYLNCHIDSFLSNQTQTLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPH 81

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            +  +FD   + +   W ++  ++   G + +A   + +M       N F IP ++  C 
Sbjct: 82  SSTYVFDSTNQKDTFLWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCA 141

Query: 191 HLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
            L  +  G+ IH LV K   F  ++ V SS + MY+KCG +E A  +FDE+V +D+V+  
Sbjct: 142 ELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWT 201

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-------------- 295
           A+V GYV    + + L  + E+         V   TL  GF   G+              
Sbjct: 202 ALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLA 261

Query: 296 --------QVMVSKLFQLMRAKG------------VEPDVVSWTSVISGLVHNFCNDEAF 335
                   QV+ S L  +    G            V+ DV SWTSVI         +E  
Sbjct: 262 VKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECL 321

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + F +M      P    +S IL    ++  +R GK  HG  +      D  V +AL+ MY
Sbjct: 322 NLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMY 381

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY-----CDEAIELFNQM-------- 442
            K G ++ A  LFD + E +  +WN+M+FG   H Y      DE + + N +        
Sbjct: 382 CKFGTLNPAEKLFDGVHEWSKESWNTMVFGYV-HCYIIKNSVDEDVSIANSLIDMYGKGG 440

Query: 443 -------------------------------------------EERKKLDHLSFTAVLTA 459
                                                       E+   +  +   VL+A
Sbjct: 441 NLSIAWKMFCRTQRDVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSA 500

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           CCH+  +E G+ +   ++E    +  +   A +VD+  + G+L ++ E+  +M  E D+ 
Sbjct: 501 CCHLPSLEKGKMVHQYIKEGGFELNVSLGTA-LVDMYAKCGQLEQSRELFNSMK-EKDVI 558

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
            W  ++     HG+   A  A +   ++E  +   N +
Sbjct: 559 SWNVMISGYGLHGD---ANSAMEVFQQMEQSNVKPNAI 593



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 156/315 (49%), Gaps = 5/315 (1%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  +I + +     IA  LI  Y +  N+  A  +F    + ++  W  L  +Y   G+
Sbjct: 413 VHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQR-DVVTWNTLISSYTHSGH 471

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           + EA+T+F EM  + L  N   +  VL AC HL  +  G+ +H  + +  F  +  + ++
Sbjct: 472 YAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTA 531

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+DMY+KCG +E+++++F+ M EKD+++ N M+SGY   G A  A+ + +++    VKPN
Sbjct: 532 LVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPN 591

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
            +T+ +L+S  + +G      +LF  M+   ++P++  +  +   L  +    EA D  +
Sbjct: 592 AITFLSLLSACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQ 651

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            M     CP      ++L AC     +  G  +  CAI    E D +    L +MY   G
Sbjct: 652 SM---PICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYY-IMLSNMYGSMG 707

Query: 400 FISEARTLFDKMSER 414
              EA    + M ER
Sbjct: 708 KWDEAERARELMKER 722


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 167/496 (33%), Positives = 277/496 (55%), Gaps = 6/496 (1%)

Query: 73  SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           SF  S   YS  I+  I  +++     + +  +  G      +  KLI  Y +C ++ +A
Sbjct: 73  SFSESLQLYSSLIQQCIGIKSITDITKIQSHALKRGFHH--SLGNKLIDAYLKCGSVVYA 130

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R +FDE+P  +I  W ++  +Y R G  +EA+ ++  M   G+  + F   SV KA   L
Sbjct: 131 RKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDL 190

Query: 193 SDIGTGEKIHSLVLKHSFG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
             +  G++ H   +    G ++ FV S+L+DMY+K G +  A+ V D++V KD+V   A+
Sbjct: 191 GLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTAL 250

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
           + GY   G   E+L +   +    ++ N  T ++++       D      +  L+   G+
Sbjct: 251 IVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGL 310

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           E   V+WTSVI GLV N   + A   F++ML     P S T+SS+L AC+S A + +GK+
Sbjct: 311 E-SAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQ 369

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           IH   +  G++ D +V +AL+D Y KCG    AR++F+ + E + V+ NSMI+  A +G+
Sbjct: 370 IHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGF 429

Query: 432 CDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             EA++LF+ M++   + +++++  VL+AC + GL+E G  +F+  +    I    +HYA
Sbjct: 430 GHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYA 489

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
           CMVDLLGRAGRL EA EM+       D+ +W  LL AC+ HG++E+A+     + +L PE
Sbjct: 490 CMVDLLGRAGRLKEA-EMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPE 548

Query: 551 SAANNMLLTDLYANAG 566
               ++LL++LYA+ G
Sbjct: 549 DGGTHVLLSNLYASTG 564


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 263/487 (54%), Gaps = 41/487 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHH-----ARMLFDEIPKTNIHR 146
           R ++    +HA  I SG  R T  A +++ F     ++HH     A  +F+++P+ N   
Sbjct: 34  RTIRDLSQIHAVFIKSGQMRDTLAAAEILRF-CATSDLHHRDLDYAHKIFNQMPQRNCFS 92

Query: 147 WIALTGAYARRGYHQE--AVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
           W  +   ++     +   A+T+F+EM   + ++ N F  PSVLKAC     I  G++IH 
Sbjct: 93  WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHG 152

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF-DEMVEKDIVAMNAMVSGYVQRGLAT 262
           L LK+ FG D FV+S+L+ MY  CG ++ A+ +F   ++EKD+V M              
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVM-------------- 198

Query: 263 EALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
                     T R K +  +V WN +I G+ + GD      LF  MR + V    VSW +
Sbjct: 199 ----------TDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSV----VSWNT 244

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +ISG   N    +A + F+EM      P   T+ S+LPA +   ++  G+ +H  A   G
Sbjct: 245 MISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSG 304

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           +  D  + SAL+DMY+KCG I +A  +F+++   N +TW++MI G A HG   +AI+ F 
Sbjct: 305 IRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFC 364

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M +   +   +++  +LTAC H GLVE G+R F+ M     + PR EHY CMVDLLGR+
Sbjct: 365 KMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRS 424

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G L EA E I  M  +PD  +W ALLGAC+  GN+E+ +  A  L ++ P  +   + L+
Sbjct: 425 GLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALS 484

Query: 560 DLYANAG 566
           ++YA+ G
Sbjct: 485 NMYASQG 491



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 163/334 (48%), Gaps = 19/334 (5%)

Query: 83  ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT 142
           E+  + + DR  + G+I+   +++ G  RL            +C+    ARMLFD++ + 
Sbjct: 192 EKDMVVMTDRRKRDGEIVLWNVMIDGYMRLG-----------DCKA---ARMLFDKMRQR 237

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           ++  W  +   Y+  G+ ++AV VF EM    ++ N   + SVL A   L  +  GE +H
Sbjct: 238 SVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLH 297

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
                     D  + S+LIDMYSKCG +EKA  VF+ +  ++++  +AM++G+   G A 
Sbjct: 298 LYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAG 357

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF-QLMRAKGVEPDVVSWTSV 321
           +A++   ++    V+P+ V +  L++  S  G      + F Q++   G+EP +  +  +
Sbjct: 358 DAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCM 417

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           +  L  +   DEA + F  +L+    P      ++L AC    N+  GK +    + M V
Sbjct: 418 VDLLGRSGLLDEA-EEF--ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDM-V 473

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
             D     AL +MYA  G  SE   +  +M E++
Sbjct: 474 PHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKD 507


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 162/504 (32%), Positives = 261/504 (51%), Gaps = 71/504 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQ--------------------------NIH 130
           G+ +H+ ++  GL     +A  ++  Y +C                           N H
Sbjct: 183 GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTH 242

Query: 131 HARM-----LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPS 184
             RM     LF+ +P  +I  W A+   Y + G   +A+ +F  M H   +  + F I S
Sbjct: 243 LGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 302

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL AC +L ++  G+++H+ +L+     ++ V ++LI  Y+K GSVE A+++ D+ +E D
Sbjct: 303 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 362

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +                                 NV+++  L+ G+ K GD     ++F 
Sbjct: 363 L---------------------------------NVISFTALLEGYVKIGDMESAREMFG 389

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           +M  +    DVV+WT++I G   N  NDEA D F+ M++ G  P S T++++L  CAS A
Sbjct: 390 VMNNR----DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLA 445

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTWNSMI 423
            +  GK+IH  AI   +E    V +A++ MYA+ G    AR +FD++  R  T+TW SMI
Sbjct: 446 CLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMI 505

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              A HG  +EA+ LF +M     + D +++  VL+AC H G V  G+R ++ ++ +++I
Sbjct: 506 VALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQI 565

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P   HYACMVDLL RAG  +EA E I+ M  EPD   WG+LL AC+ H N ELAE+AA+
Sbjct: 566 APEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAE 625

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L  ++P ++     + ++Y+  G
Sbjct: 626 KLLSIDPNNSGAYSAIANVYSACG 649



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 217/489 (44%), Gaps = 62/489 (12%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQN----IHHARMLFDEIP--KTNIHRWIA 149
           +G+ +HA+ + +GL     +   L+++Y E       +  AR LFDEIP  + N+  W +
Sbjct: 44  AGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNS 103

Query: 150 LTGAYARRGYHQEAVTVFHEM-------------------------------HIQGLKQN 178
           L   +A+ G   +A  VF EM                                  G    
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT 163

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F + +VL +C        G K+HS V+K   G+   V +S+++MY KCG  E A  VF+
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 223

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M  + + + NAMVS     G     ++L E +       ++V+WN +I+G++++G    
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLG----RMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAK 279

Query: 299 VSKLF-QLMRAKGVEPDVVSWTSVISGLVHNFCNDE-AFDTFKEMLSQGFCPTSATISSI 356
             KLF +++    + PD  + TSV+S    N  N          +L       S   +++
Sbjct: 280 ALKLFSRMLHESSMAPDEFTITSVLSACA-NLGNVRIGKQVHAYILRTEMAYNSQVTNAL 338

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRS--ALVDMYAKCGFISEARTLFDKMSER 414
           +   A + ++   + I    +   +E DL+V S  AL++ Y K G +  AR +F  M+ R
Sbjct: 339 ISTYAKSGSVENARRI----MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V W +MI G   +G  DEAI+LF  M     + +  +  AVL+ C  +  ++ G+++ 
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIH 454

Query: 474 -----NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
                +++++   +         ++ +  R+G    A  M   +    +   W +++ A 
Sbjct: 455 CRAIRSLLEQSSSVSN------AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVAL 508

Query: 529 KNHGNIELA 537
             HG  E A
Sbjct: 509 AQHGQGEEA 517



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 181/396 (45%), Gaps = 86/396 (21%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK----CGSVEKAKKVFDEM 240
           +L+ C   ++ G G  IH+  +K      A++ ++L+  Y +     G +  A+++FDE+
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
                                            P  + NV TWN+L+S F+KSG      
Sbjct: 92  ---------------------------------PLARRNVFTWNSLLSMFAKSG------ 112

Query: 301 KLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
              +L  A+GV     E D VSWT ++ GL       EA  T  +M + GF PT  T+++
Sbjct: 113 ---RLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTN 169

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART--------- 406
           +L +CA       G+++H   + +G+   + V +++++MY KCG    A T         
Sbjct: 170 VLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRS 229

Query: 407 ----------------------LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-- 442
                                 LF+ M +R+ V+WN+MI G   +G   +A++LF++M  
Sbjct: 230 VSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLH 289

Query: 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           E     D  + T+VL+AC ++G V +G+++   +  + ++   ++    ++    ++G +
Sbjct: 290 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYIL-RTEMAYNSQVTNALISTYAKSGSV 348

Query: 503 AEAYE-MIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             A   M ++M T+ ++  + ALL      G++E A
Sbjct: 349 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESA 384



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 124/272 (45%), Gaps = 20/272 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           L  GK +H + I S L + + ++  +IT Y    +   AR +FD++  +     W ++  
Sbjct: 447 LDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-KHSFG 211
           A A+ G  +EAV +F EM   G++ +      VL AC H   +  G++ +  +  +H   
Sbjct: 507 ALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIA 566

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +    + ++D+ ++ G   +A++    M VE D +A  +++S       A  A    E+
Sbjct: 567 PEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEK 626

Query: 271 IGTPRVKPNVV-TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHN 328
           + +  + PN    ++ + + +S  G     +++++  + K V  +   SWT + S  +H 
Sbjct: 627 LLS--IDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSK-IHV 683

Query: 329 FCNDE------------AFDTFKEMLSQGFCP 348
           F  D+            A   ++E+   GF P
Sbjct: 684 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVP 715


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 260/476 (54%), Gaps = 7/476 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +++ K LH  +      +   +  KL+  Y  C      R +FDE+   N+  +  +  +
Sbjct: 34  IKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRS 93

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y     + + + VF EM   G + + +  P VLKAC    ++  G  IH  VLK     +
Sbjct: 94  YVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFN 153

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV + LI MY KCG + +A++VFDEM+ KD+V+ N+MV+GY       +AL +  E+  
Sbjct: 154 LFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMED 213

Query: 274 PRVKPNVVTWNTLISGFSKSGDQ--VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
              KP+  T  +L+   + +  +  + V K+F  +  K    +++SW  +I   + N   
Sbjct: 214 YGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERK----NLISWNVMIRVYMKNSLP 269

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            +A D + +M      P + T +S+LPAC   + +  G+ IH       +  +L + ++L
Sbjct: 270 TQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSL 329

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           +DMYA+CG + +A+ +FD+M  R+  +W S+I      G    A+ LF +M    +  D 
Sbjct: 330 IDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDS 389

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F A+L+AC H GL++ G+  F  M + Y+I PR EHYAC+VDLLGRAGR+ EAY +IK
Sbjct: 390 IAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIK 449

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  EP+  VW  LL +C+   N+++  +AA +L +L PE +   +LL+++YA AG
Sbjct: 450 QMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAG 505



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 167/387 (43%), Gaps = 74/387 (19%)

Query: 180 FVIPSVLKACGHLS-------DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
           F I  +L + G L+       DI T +K+H+++   +   +  +   L+  Y+ CG    
Sbjct: 12  FFIQQILTSFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGL 71

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
            +KVFDEM ++++V  N M+  YV      + L +  E+     +P+  T+  ++   S 
Sbjct: 72  TRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSC 131

Query: 293 S----------GDQVMVSKLFQLMRAKG---------------------VEPDVVSWTSV 321
           S          GD + V   F L    G                     +  DVVSW S+
Sbjct: 132 SENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSM 191

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ++G  HN   D+A +  +EM   G  P   T++S++PA A+ ++                
Sbjct: 192 VAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSS---------------- 235

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E  L+V                   +F  +  +N ++WN MI     +    +A++L+ Q
Sbjct: 236 ENVLYVEK-----------------IFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQ 278

Query: 442 MEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           ME+ R + D ++F +VL AC  +  + LG+R+   + EK K+ P       ++D+  R G
Sbjct: 279 MEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYV-EKKKLCPNLLLENSLIDMYARCG 337

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGA 527
            L +A  +   M    D+  W +L+ A
Sbjct: 338 CLDDAKRVFDRMKFR-DVASWTSLISA 363



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 164/413 (39%), Gaps = 92/413 (22%)

Query: 53  KPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           + ++NG F   +Y  P +     L   + SE          L+ G ++H  ++  GL   
Sbjct: 108 REMVNGGFRPDNYTYPCV-----LKACSCSEN---------LRYGLLIHGDVLKVGLDFN 153

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
             +   LI  Y +C  +  AR +FDE+   ++  W ++   YA      +A+ +  EM  
Sbjct: 154 LFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMED 213

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            G K +   + S++ A  + S                                   +V  
Sbjct: 214 YGQKPDGCTMASLMPAVANTSS---------------------------------ENVLY 240

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------- 283
            +K+F  +  K++++ N M+  Y++  L T+A++L  ++   RV+P+ +T+         
Sbjct: 241 VEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGD 300

Query: 284 --------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                                     N+LI  +++ G      ++F  M+ +    DV S
Sbjct: 301 LSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFR----DVAS 356

Query: 318 WTSVIS--GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK-EIHG 374
           WTS+IS  G+    CN  A   F EML+ G  P S    +IL AC+ +  +  G+     
Sbjct: 357 WTSLISAYGMTGQGCN--AVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQ 414

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGC 426
                 +   +   + LVD+  + G + EA  +  +M  E N   W +++  C
Sbjct: 415 MTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSC 467



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 100/241 (41%), Gaps = 7/241 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H  +    L     +   LI  Y  C  +  A+ +FD +   ++  W +L  
Sbjct: 303 ALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLIS 362

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY   G    AV +F EM   G   +     ++L AC H   +  G +I+   +   +  
Sbjct: 363 AYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEG-RIYFKQMTDDYRI 421

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +   + L+D+  + G V++A  +  +M +E +      ++S    R      + ++ 
Sbjct: 422 TPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSC--RVFTNMDIGILA 479

Query: 270 EIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                ++ P    +  L+S  ++K+G    V+++  +M+ K +          ++  VH 
Sbjct: 480 ADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHT 539

Query: 329 F 329
           F
Sbjct: 540 F 540


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 266/532 (50%), Gaps = 73/532 (13%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI-ATKLITFYTECQ 127
           +  R   L    + + + +  + +  + GK +H  L  +G  R T I A  LI  Y EC 
Sbjct: 53  LAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECG 112

Query: 128 -------------------------------NIHHARMLFDEIPKTNIHRWIALTGAYAR 156
                                          ++++AR LFD + + ++  W  +  AYA+
Sbjct: 113 RDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAK 172

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           +G   EA+ ++ +     +  N F    VL  C  L ++   +++H  VL   F ++  +
Sbjct: 173 QGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVL 232

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            SS++D YSKCG +  A+ +FDEM+ KDI A                             
Sbjct: 233 SSSIVDAYSKCGEMRCARTLFDEMLVKDIHA----------------------------- 263

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
                 W T++SG++K GD    S+LF  M     E + VSW+++ISG   N    EA D
Sbjct: 264 ------WTTIVSGYAKWGDMNSASELFHQMP----EKNPVSWSALISGYARNSLGHEALD 313

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M+  G  P   T SS L ACAS A ++ GK++HG  I      +  V S+L+DMY+
Sbjct: 314 YFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYS 373

Query: 397 KCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           KCG +  +  +F  M ++++ V WN+MI   A +G+ ++A+++FN M E   K D ++F 
Sbjct: 374 KCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFI 433

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L+AC H GLV+ G R F  M   + + P  EHYAC++DLLGRAG   E    ++ MS 
Sbjct: 434 VILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSC 493

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +PD  VW ALLG C+ H NIEL    A+ + EL+P+S+A  + L  LYA  G
Sbjct: 494 KPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLG 545


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 162/504 (32%), Positives = 261/504 (51%), Gaps = 71/504 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQ--------------------------NIH 130
           G+ +H+ ++  GL     +A  ++  Y +C                           N H
Sbjct: 77  GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTH 136

Query: 131 HARM-----LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPS 184
             RM     LF+ +P  +I  W A+   Y + G   +A+ +F  M H   +  + F I S
Sbjct: 137 LGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 196

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL AC +L ++  G+++H+ +L+     ++ V ++LI  Y+K GSVE A+++ D+ +E D
Sbjct: 197 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 256

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +                                 NV+++  L+ G+ K GD     ++F 
Sbjct: 257 L---------------------------------NVISFTALLEGYVKIGDMESAREMFG 283

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           +M  +    DVV+WT++I G   N  NDEA D F+ M++ G  P S T++++L  CAS A
Sbjct: 284 VMNNR----DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLA 339

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTWNSMI 423
            +  GK+IH  AI   +E    V +A++ MYA+ G    AR +FD++  R  T+TW SMI
Sbjct: 340 CLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMI 399

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              A HG  +EA+ LF +M     + D +++  VL+AC H G V  G+R ++ ++ +++I
Sbjct: 400 VALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQI 459

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P   HYACMVDLL RAG  +EA E I+ M  EPD   WG+LL AC+ H N ELAE+AA+
Sbjct: 460 APEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAE 519

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L  ++P ++     + ++Y+  G
Sbjct: 520 KLLSIDPNNSGAYSAIANVYSACG 543



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 195/426 (45%), Gaps = 25/426 (5%)

Query: 122 FYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            + +   +  AR +F E+P+ +   W  +     R G   EA+    +M   G     F 
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + +VL +C        G K+HS V+K   G+   V +S+++MY KCG  E A  VF+ M 
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
            + + + NAMVS     G     ++L E +       ++V+WN +I+G++++G      K
Sbjct: 121 VRSVSSWNAMVSLNTHLG----RMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 176

Query: 302 LF-QLMRAKGVEPDVVSWTSVISGLVHNFCNDE-AFDTFKEMLSQGFCPTSATISSILPA 359
           LF +++    + PD  + TSV+S    N  N          +L       S   ++++  
Sbjct: 177 LFSRMLHESSMAPDEFTITSVLSACA-NLGNVRIGKQVHAYILRTEMAYNSQVTNALIST 235

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRS--ALVDMYAKCGFISEARTLFDKMSERNTV 417
            A + ++   + I    +   +E DL+V S  AL++ Y K G +  AR +F  M+ R+ V
Sbjct: 236 YAKSGSVENARRI----MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVV 291

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLF--- 473
            W +MI G   +G  DEAI+LF  M     + +  +  AVL+ C  +  ++ G+++    
Sbjct: 292 AWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRA 351

Query: 474 --NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
             +++++   +         ++ +  R+G    A  M   +    +   W +++ A   H
Sbjct: 352 IRSLLEQSSSVSN------AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQH 405

Query: 532 GNIELA 537
           G  E A
Sbjct: 406 GQGEEA 411



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 124/272 (45%), Gaps = 20/272 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           L  GK +H + I S L + + ++  +IT Y    +   AR +FD++  +     W ++  
Sbjct: 341 LDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 400

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-KHSFG 211
           A A+ G  +EAV +F EM   G++ +      VL AC H   +  G++ +  +  +H   
Sbjct: 401 ALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIA 460

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +    + ++D+ ++ G   +A++    M VE D +A  +++S       A  A    E+
Sbjct: 461 PEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEK 520

Query: 271 IGTPRVKPNVV-TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHN 328
           + +  + PN    ++ + + +S  G     +++++  + K V  +   SWT + S  +H 
Sbjct: 521 LLS--IDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSK-IHV 577

Query: 329 FCNDE------------AFDTFKEMLSQGFCP 348
           F  D+            A   ++E+   GF P
Sbjct: 578 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVP 609


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 170/527 (32%), Positives = 275/527 (52%), Gaps = 37/527 (7%)

Query: 75  HLSPAAY--SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           H+ P  Y  S  +   +  + L+ GK +H  ++ SG+     +    I FY +C  +   
Sbjct: 237 HVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLG 296

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R LFD +   N+  W  +     +  +H++A+ +F EM   G   + F   SVL +CG L
Sbjct: 297 RKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSL 356

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
             +  G ++H+  +K +   D FV + LIDMY+KC S+  A+KVF+ M   D+V+ NAM+
Sbjct: 357 VALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMI 416

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS------GDQV--------- 297
            GY ++    EAL+L  E+      P ++ + +L+ G S S       +Q+         
Sbjct: 417 EGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLL-GVSASLYHLELSNQIHGLIIKYGV 475

Query: 298 ------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
                       + SK  ++  A+ V     + D+V WT++ SG      N+E+   +K 
Sbjct: 476 SLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKC 535

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           +      P   T ++++ A ++ A++R G++ H   I MG + D  V + LVDMYAK G 
Sbjct: 536 LQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGS 595

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTA 459
           I EA   F   + ++T  WNSMI   A HG  ++A+++F  M  E  K ++++F  VL+A
Sbjct: 596 IEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSA 655

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C H GL++LG   F+ M + + I P  EHY CMV LLGRAG+L EA E I+ M  +    
Sbjct: 656 CSHTGLLDLGFDHFDSMSQ-FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAV 714

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           VW +LL AC+  GN+EL   AA+      P  + + +LL++++A+ G
Sbjct: 715 VWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKG 761



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 223/475 (46%), Gaps = 44/475 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  ++  G  +   + T LI FYT+   I  AR+LFD +       W  +   Y+++G 
Sbjct: 163 IHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGR 222

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            Q ++ +F +M    +  + +V+ SVL AC  L  +  G++IH  VL+     D  +V+ 
Sbjct: 223 SQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNG 282

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
            ID Y KC  V+  +K+FD MV+K++V+   +++G +Q     +AL+L  E+      P+
Sbjct: 283 FIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPD 342

Query: 280 V-----------------------------------VTWNTLISGFSKSGDQVMVSKLFQ 304
                                                  N LI  ++K        K+F 
Sbjct: 343 AFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFN 402

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           LM A     D+VS+ ++I G        EA D F+EM      PT     S+L   AS  
Sbjct: 403 LMAA----IDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLY 458

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           ++    +IHG  I  GV  D    SAL+D+Y+KC  + +AR +F+++ +++ V W +M  
Sbjct: 459 HLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFS 518

Query: 425 GCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKYKI 482
           G       +E+++L+  ++  R K +  +F AV+TA  ++  +  GQ+  N +++  +  
Sbjct: 519 GYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDD 578

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            P   +   +VD+  ++G + EA++   + + + D   W +++     HG  E A
Sbjct: 579 DPFVAN--TLVDMYAKSGSIEEAHKAFISTNWK-DTACWNSMIATYAQHGEAEKA 630



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 246/490 (50%), Gaps = 42/490 (8%)

Query: 98  KILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           K +H++++V G  +    +   L+  Y++   ++HA  LFD +   N+  W ++   Y  
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 157 RGYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
             +  EA+ +F + M     K N +++ SV++AC     +    +IH LV+K  +  D +
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V +SLID Y+K   ++ A+ +FD +  K       +++GY ++G +  +L L +++    
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGH 237

Query: 276 VKPNVVTWNTLISG-----FSKSGDQV--------------MVSKLF---------QLMR 307
           V P+    ++++S      F + G Q+              MV+            QL R
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGR 297

Query: 308 A---KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
               + V+ +VVSWT+VI+G + N  + +A D F EM   G+ P +   +S+L +C S  
Sbjct: 298 KLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLV 357

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            + +G+++H  AI + ++ D  V++ L+DMYAKC  +++AR +F+ M+  + V++N+MI 
Sbjct: 358 ALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIE 417

Query: 425 GCANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           G +      EA++LF +M  R  L     L F ++L     +  +EL  ++  ++  KY 
Sbjct: 418 GYSRQDKLCEALDLFREM--RLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLII-KYG 474

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIE-LAEI 539
           +       + ++D+  +  R+ +A  + + +  + D+ VW A+  G  +   N E L   
Sbjct: 475 VSLDEFAGSALIDVYSKCSRVGDARLVFEEIQ-DKDIVVWTAMFSGYTQQSENEESLKLY 533

Query: 540 AAKHLSELEP 549
               +S L+P
Sbjct: 534 KCLQMSRLKP 543


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 167/514 (32%), Positives = 272/514 (52%), Gaps = 51/514 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G+ +H  +     A +  +   +I  + +C ++  AR +F+E+P  ++  W AL  
Sbjct: 148 ALQLGRWVHETMHGKTKANV-YVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALIC 206

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
                G   EA+ +F +M  +GL  +  ++ S+L ACG L  +  G  +    ++  F +
Sbjct: 207 GTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFES 266

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR-------------- 258
           D +V +++IDMY KCG   +A +VF  MV  D+V+ + +++GY Q               
Sbjct: 267 DLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMI 326

Query: 259 --GLATEAL----------------------NLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
             GLAT A+                      N V + G   +  +VV  + LI  ++  G
Sbjct: 327 NVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEG---LMSDVVVGSALIVMYANCG 383

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISG--LVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
                  +F+    K    D++ W S+I G  LV +F  + AF TF+ +      P   T
Sbjct: 384 SIKEAESIFECTSDK----DIMVWNSMIVGYNLVGDF--ESAFFTFRRIWGAEHRPNFIT 437

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           + SILP C     +R+GKEIHG     G+  ++ V ++L+DMY+KCGF+     +F +M 
Sbjct: 438 VVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMM 497

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQR 471
            RN  T+N+MI  C +HG  ++ +  + QM EE  + + ++F ++L+AC H GL++ G  
Sbjct: 498 VRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWL 557

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
           L+N M   Y I P  EHY+CMVDL+GRAG L  AY+ I  M   PD  V+G+LLGAC+ H
Sbjct: 558 LYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLH 617

Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             +EL E+ A+ + +L+ + + + +LL++LYA+ 
Sbjct: 618 NKVELTELLAERILQLKADDSGHYVLLSNLYASG 651



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 225/483 (46%), Gaps = 48/483 (9%)

Query: 94  LQSGKILHAQLIVSGLARLT-----QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           L   + LHA L+V G  + T       A++L+  Y    ++ HA + F  +P   I  W 
Sbjct: 43  LHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWN 102

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+       G+  +A+  +H M   G+  + +  P VLKAC  L  +  G  +H   +  
Sbjct: 103 AILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHE-TMHG 161

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               + +V  ++IDM++KCGSVE A+++F+EM ++D+ +  A++ G +  G   EAL L 
Sbjct: 162 KTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLF 221

Query: 269 EEIGTPRVKPNVV-----------------------------------TWNTLISGFSKS 293
            ++ +  + P+ V                                     N +I  + K 
Sbjct: 222 RKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKC 281

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD +   ++F  M    V  DVVSW+++I+G   N    E++  +  M++ G    +   
Sbjct: 282 GDPLEAHRVFSHM----VYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVA 337

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +S+LPA      +++GKE+H   +  G+  D+ V SAL+ MYA CG I EA ++F+  S+
Sbjct: 338 TSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSD 397

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           ++ + WNSMI G    G  + A   F ++     + + ++  ++L  C  +G +  G+ +
Sbjct: 398 KDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEI 457

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              +  K  +         ++D+  + G L    ++ K M    ++  +  ++ AC +HG
Sbjct: 458 HGYVT-KSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVR-NVTTYNTMISACGSHG 515

Query: 533 NIE 535
             E
Sbjct: 516 QGE 518



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 172/393 (43%), Gaps = 45/393 (11%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  A++ G  L    + SG      ++  +I  Y +C +   A  +F  +  +++  W  
Sbjct: 245 RLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWST 304

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   Y++   +QE+  ++  M   GL  N  V  SVL A G L  +  G+++H+ VLK  
Sbjct: 305 LIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEG 364

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             +D  V S+LI MY+ CGS+++A+ +F+   +KDI+  N+M+ GY   G    A     
Sbjct: 365 LMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFR 424

Query: 270 EIGTPRVKPNVVT-----------------------------------WNTLISGFSKSG 294
            I     +PN +T                                    N+LI  +SK G
Sbjct: 425 RIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCG 484

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
              +  K+F+ M  +    +V ++ ++IS    +   ++    +++M  +G  P   T  
Sbjct: 485 FLELGEKVFKQMMVR----NVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFI 540

Query: 355 SILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS- 412
           S+L AC+ A  + RG  ++   I   G+E ++   S +VD+  + G +  A     +M  
Sbjct: 541 SLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPM 600

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
             +   + S++  C  H      +EL   + ER
Sbjct: 601 TPDANVFGSLLGACRLH----NKVELTELLAER 629



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 11/198 (5%)

Query: 362 SAANMRRGKEIHGCAIVMGV-----EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           S  N+   + +H   +V+G             S LV++Y   G +  A   F  +  +  
Sbjct: 39  SPPNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPI 98

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           + WN+++ G    G+  +AI  ++ M +     D+ ++  VL AC  +  ++LG+ +   
Sbjct: 99  IAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHET 158

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNI 534
           M  K K     +    ++D+  + G + +A  M + M  + DL  W AL+ G   N   +
Sbjct: 159 MHGKTKANVYVQ--CAVIDMFAKCGSVEDARRMFEEMP-DRDLASWTALICGTMWNGECL 215

Query: 535 ELAEIAAKHLSE-LEPES 551
           E   +  K  SE L P+S
Sbjct: 216 EALLLFRKMRSEGLMPDS 233


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 273/487 (56%), Gaps = 21/487 (4%)

Query: 93  ALQSGKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFD----------EIPK 141
           +L + K++H+ L   G L        +LI  Y++  ++H AR LFD          + P 
Sbjct: 37  SLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPN 96

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT--GE 199
           + +     +  AYA  G   EA+ ++  M   G+  N F  P VLK C   S++G   GE
Sbjct: 97  SFLCN--TMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCA--SELGAVFGE 152

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
            +H  V++  FG+D FV ++L+DMY+KCG +  A +VFD M+ +D+V   AM++ Y Q  
Sbjct: 153 VVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAE 212

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
              +AL L  ++       + +T  ++ S   + GD  M     +L+  +  E + +SW 
Sbjct: 213 RPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWN 272

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           S++SG   N    +A   F +M +    P   T   ++ AC+   +   G+++H   I  
Sbjct: 273 SMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISS 332

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFD--KMSERNTVTWNSMIFGCANHGYCDEAIE 437
            ++ D  +R+A++DMY KCG +  A  +F+  ++ ER+  +WN +I G   HG+  EA+E
Sbjct: 333 KMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALE 392

Query: 438 LFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF++M+ E  + + ++FT++L+AC H GL++ G++ F  M  K  + P  +HYACMVD+L
Sbjct: 393 LFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDML 451

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
           GRAG L EA+ +IK + + P   VWGALL AC+ HGN EL EIAA +L +LEPE     +
Sbjct: 452 GRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYV 511

Query: 557 LLTDLYA 563
           L++++YA
Sbjct: 512 LMSNIYA 518


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 256/481 (53%), Gaps = 47/481 (9%)

Query: 94  LQSGKIL------HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           LQ+ K L      H   I++G      +   L+  Y E + +  A  +F ++   +   +
Sbjct: 137 LQASKFLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSF 196

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             +   YA++G++ EA+   HEM   GLK + F +  +L  CG L D   G+ +H+ + +
Sbjct: 197 NIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIER 256

Query: 208 HSF--GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
                 ++  + ++L+DMY KC  +  A+ +F+ +V KD                     
Sbjct: 257 RGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKD--------------------- 295

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                          ++WNT+I+G++K G+  +    F+ M  +    D+VSW S+I+G 
Sbjct: 296 --------------TISWNTMIAGYAKVGNLEIAHNFFEDMPCR----DLVSWNSIIAGY 337

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                       F+ M+++   P   TI +++ A A    +  G+ IHG  + M ++ D 
Sbjct: 338 AQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDA 397

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
            + SA +DMY KCG I  A  +F +++E++   W +MI G A HGY  +A++LF +M+E 
Sbjct: 398 FLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY 457

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
              + ++F AVLTAC H G V  G R+FN M+E+Y I P  EHY C+VDLLGR+GR +E 
Sbjct: 458 VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEV 517

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            ++I+ M  +P   +WGA+L AC+ +GNIE+AEIA K L +LEPE     +LL+++YA +
Sbjct: 518 KDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATS 577

Query: 566 G 566
           G
Sbjct: 578 G 578



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 15/294 (5%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTN 143
           +++Y++ + L+      AQ I + + R   I+   +I  Y +  N+  A   F+++P  +
Sbjct: 272 LDMYVKCKELRI-----AQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRD 326

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
           +  W ++   YA++G       +F  M  + +  +   I +++ A   +  +  G  IH 
Sbjct: 327 LVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHG 386

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            V++     DAF+ S+ IDMY KCGS+++A  VF E+ EKD+     M++G+   G  ++
Sbjct: 387 WVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSK 446

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVI 322
           AL L  E+    V PN VT+  +++  S SG      ++F  M+ + G+EP V  +  ++
Sbjct: 447 ALQLFYEM-QEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLV 505

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR----RGKEI 372
             L  +    E  D  + M  +   P+ +   ++L AC +  N+      GKE+
Sbjct: 506 DLLGRSGRFSEVKDVIEMMPMK---PSRSIWGAVLSACRAYGNIEIAEIAGKEL 556



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 119/264 (45%), Gaps = 11/264 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H  ++   +     + +  I  Y +C +I  A M+F E+ + ++  W  +  
Sbjct: 377 ALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMIT 436

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A  GY  +A+ +F+EM  + +  N     +VL AC H   +  G +I +  +K  +G 
Sbjct: 437 GFAFHGYGSKALQLFYEMQ-EYVMPNQVTFVAVLTACSHSGFVSQGLRIFN-SMKERYGI 494

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           +  V     L+D+  + G   + K V + M  K   ++   V    +   A   + + E 
Sbjct: 495 EPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACR---AYGNIEIAEI 551

Query: 271 IGTP--RVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
            G    +++P       L+S  ++ SG      K+ ++M ++GV+      + V+ G++H
Sbjct: 552 AGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGIIH 611

Query: 328 NF-CNDEAFDTFKEMLSQGFCPTS 350
            F   D+    + E+ S  FC  S
Sbjct: 612 EFVAADKRHPRWIEIQSILFCLKS 635



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 107/235 (45%), Gaps = 8/235 (3%)

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           L R     P++  + ++IS L  +   +++F  +  +LS    P  +T   +L A   + 
Sbjct: 87  LFRHHTPHPNLYIYNTMISAL--SLSLNQSFAFYNSLLSSCIYPNRSTFLFLLQA---SK 141

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            + +  +IH  AI+ G     ++++ L+ +Y +   +  A  +F +M+  + V++N MIF
Sbjct: 142 FLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIF 201

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A  G+  EA++  ++M     K D  +   +L  C  +G  +LG+ +   ++ +  I 
Sbjct: 202 GYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIK 261

Query: 484 PRTEHY-ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
                    ++D+  +   L  A  +   +    D   W  ++      GN+E+A
Sbjct: 262 SSNLILNNALLDMYVKCKELRIAQSIFNVI-VRKDTISWNTMIAGYAKVGNLEIA 315


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 267/505 (52%), Gaps = 35/505 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H   I + +     +A   +  Y++   I  A+ LF  IP  +   W ALT   A+
Sbjct: 445 GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 504

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +EAV +   M + G+  +     + + AC ++    TG++IH L +K+   ++  V
Sbjct: 505 NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAV 564

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            SSLID+YSK G VE ++K+F ++    IV +NA+++G+VQ     EA+ L +++    +
Sbjct: 565 GSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGL 624

Query: 277 KPNVVTWNTLISGFSKS-----GDQVM----------------VSKLFQLMRAKGVE--- 312
           KP+ VT+++++SG S S     G QV                 VS     +++K +E   
Sbjct: 625 KPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDAN 684

Query: 313 ------PD---VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                 PD   +  WT++ISG   N   D +  +F  M         AT +S+L AC+  
Sbjct: 685 KLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDV 744

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSM 422
                GKEIHG     G        SAL+DMY+KCG +  +   F ++ ++++ + WNSM
Sbjct: 745 TAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSM 804

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A +GY DEA+ LF +MEE + K D ++F  VL AC H GL+  G+  F  M++ Y 
Sbjct: 805 IVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYG 864

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + PR +HYAC +DLLGR G L EA E I  +   PD  VW   L AC+ H + E  +IAA
Sbjct: 865 LTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAA 924

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           + L ELEP+ ++  +LL+ L+A  G
Sbjct: 925 RKLVELEPQYSSTYVLLSSLHAATG 949



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 195/385 (50%), Gaps = 6/385 (1%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R R  Q+ + LH +++  G   L ++   L+  Y +   + +A        +       +
Sbjct: 68  RARHSQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASS 127

Query: 150 LTGAYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           L   +AR G   + +  F  +    G + + F +  VL AC  +  +  G ++H  V+K 
Sbjct: 128 LLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKS 187

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
            F +  F  ++L+DMY+KCG V  A++VFD +   D +  ++M++ Y + G   EAL L 
Sbjct: 188 GFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALF 247

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
             +      P+ VT  T+IS  + SG     + L + M      P  V+W +VISG   +
Sbjct: 248 SRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPT----PSTVAWNAVISGHAQS 303

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                    +K+M S G  PT +T +S+L A A+      G+++H  A++ G++ ++ V 
Sbjct: 304 GLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVG 363

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
           S+L+++YAKCG  S+A+ +FD   E+N V WN+M+ G   +   +EAI +F  M     +
Sbjct: 364 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 423

Query: 448 LDHLSFTAVLTACCHVGLVELGQRL 472
            D  +F ++L AC ++    LG+++
Sbjct: 424 TDEFTFVSILGACTYLSSFYLGKQV 448



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 237/517 (45%), Gaps = 45/517 (8%)

Query: 72  RSFHLSP--AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           RS+ L P  + ++  +      +A   G+ +HA  ++ GL     + + LI  Y +C   
Sbjct: 317 RSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCP 376

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A+ +FD   + NI  W A+   + +    +EA+ +F  M    L+ + F   S+L AC
Sbjct: 377 SDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGAC 436

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
            +LS    G+++H + +K+      FV ++ +DMYSK G++  AK +F  +  KD ++ N
Sbjct: 437 TYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWN 496

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT------------------------ 285
           A+  G  Q     EA+ +++ +    + P+ V+++T                        
Sbjct: 497 ALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKY 556

Query: 286 -----------LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                      LI  +SK GD     K+F  + A  + P      ++I+G V N   DEA
Sbjct: 557 GICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVP----INALIAGFVQNNNEDEA 612

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVD 393
              F+++L  G  P+S T SSIL  C+ + N   GK++H   +  GV   D  +  +L  
Sbjct: 613 IQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAG 672

Query: 394 MYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHL 451
           +Y K   + +A  L  +M + +N   W ++I G A +GY D ++  F +M     + D  
Sbjct: 673 IYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEA 732

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F +VL AC  V     G+ +  ++  K          + ++D+  + G +  ++E  K 
Sbjct: 733 TFASVLKACSDVTAFADGKEIHGLIT-KSGFGSYETATSALIDMYSKCGDVISSFEAFKE 791

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           +  + D+  W +++     +G  + A +  + + EL+
Sbjct: 792 LKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQ 828



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 216/488 (44%), Gaps = 40/488 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           +S  I  Y R    Q    L +++   G A        +I+       + HA  L  ++P
Sbjct: 227 WSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMP 286

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +   W A+   +A+ G     + ++ +M   GL        S+L A  ++     G++
Sbjct: 287 TPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQ 346

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H+  + H    + FV SSLI++Y+KCG    AK VFD   EK+IV  NAM++G+VQ  L
Sbjct: 347 MHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNEL 406

Query: 261 ATEALNLVEEIGTPRVKPNVVTW-----------------------------------NT 285
             EA+ + + +    ++ +  T+                                   N 
Sbjct: 407 PEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANA 466

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
            +  +SK G       LF L+  K    D +SW ++  GL  N   +EA    K M   G
Sbjct: 467 TLDMYSKYGAIGDAKALFSLIPYK----DSISWNALTVGLAQNLEEEEAVCMLKRMRLHG 522

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P   + S+ + AC++      GK+IH  AI  G+  +  V S+L+D+Y+K G +  +R
Sbjct: 523 ITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSR 582

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVG 464
            +F ++   + V  N++I G   +   DEAI+LF Q +++  K   ++F+++L+ C    
Sbjct: 583 KIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSL 642

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
              +G+++     +   +   T     +  +  ++  L +A +++  M    +LF W A+
Sbjct: 643 NSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAI 702

Query: 525 LGACKNHG 532
           +     +G
Sbjct: 703 ISGYAQNG 710


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 254/477 (53%), Gaps = 40/477 (8%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           + RD AL+ G+ LH  ++  GL     + T L+  Y  C  +  AR +FD  PK ++  W
Sbjct: 128 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 187

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             +  AY + G  +E+  +F  M  + +      +  VL AC  L D+ TG+K+HS V  
Sbjct: 188 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 247

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
               ++  + +++IDMY+ CG ++ A  +F  M  +DI                      
Sbjct: 248 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI---------------------- 285

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                        ++W T++SGF+  G+  +    F  M     E D VSWT++I G + 
Sbjct: 286 -------------ISWTTIVSGFTNLGEIDVARNYFDKM----PEKDYVSWTAMIDGYIR 328

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           +    EA + F+ M +    P   T+ S+L ACA    +  G+ I        ++ DL V
Sbjct: 329 SNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFV 388

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
           R+AL+DMY KCG + +A ++F +MS+R+  TW +MI G A +G+ ++A+++F+ M +   
Sbjct: 389 RNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASI 448

Query: 448 L-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           L D +++  VL+AC H GLV+ G++ F  M  ++ I P   HY C+VDLL RAGRL EAY
Sbjct: 449 LPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAY 508

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           E+I+ M  + +  VWGALL  C+ +   ++AE+  K + ELEP++ A  +LL ++YA
Sbjct: 509 EVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYA 565



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 105/242 (43%), Gaps = 9/242 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +   +  + +     +   LI  Y +C ++  A  +F E+ + +   W A+  
Sbjct: 366 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 425

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFG 211
             A  G+ ++A+ +F  M    +  +      VL AC H   +  G K    +  +H   
Sbjct: 426 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 485

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
            +      L+D+ ++ G +++A +V + M ++ + +   A+++G   Y +  +A   +  
Sbjct: 486 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 545

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
           + E+  P      V    + +   +  D   + +L Q+M  KG++         ++G VH
Sbjct: 546 ILEL-EPDNGAVYVLLCNIYAACKRWND---LRELRQMMMDKGIKKTPGCSLIEMNGRVH 601

Query: 328 NF 329
            F
Sbjct: 602 EF 603


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 161/497 (32%), Positives = 256/497 (51%), Gaps = 35/497 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTE--CQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           LHA  I +       ++++L+  Y +    N+ +A  LFD I +  +  W  L   Y   
Sbjct: 34  LHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIEN 93

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
               +A+ +F ++ +     + F +P VLK C  L  +  G++IH LVLK  FG D FV+
Sbjct: 94  QRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVL 152

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI------ 271
           SSL+ MYSKCG +E  +KVFD M +KD+V+ N+++ GY + G    AL + EE+      
Sbjct: 153 SSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSF 212

Query: 272 -------GTPRVKP--------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
                  G  +                 N V+WN +I+G+ K+GD     +LF  M    
Sbjct: 213 SWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMP--- 269

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
            E  +V+W S+I+G   N    +A   F+ ML +   P   TI   + A +   ++  G+
Sbjct: 270 -ERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGR 328

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
            +H   +  G + D  + + L++MY+KCG +  A  +F  + ++    W S+I G   HG
Sbjct: 329 WVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHG 388

Query: 431 YCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
             ++ +ELF++M       H ++F  VL AC H G  E   R F MM   Y I P  EHY
Sbjct: 389 LVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHY 448

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
            C++D+L RAG L EA + I+ M  + +  +W +LL   + HGNI + E AA+HL +L P
Sbjct: 449 GCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAP 508

Query: 550 ESAANNMLLTDLYANAG 566
           ++    ++L+++YA AG
Sbjct: 509 DTTGCYVILSNMYAAAG 525



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 152/330 (46%), Gaps = 28/330 (8%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           D   +SGK+  A+ +   +     ++   +I  Y +  + + A+ LFD++P+ ++  W +
Sbjct: 219 DGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNS 278

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y R     +A+ +F  M  + +  N   I   + A   +  +GTG  +HS ++K  
Sbjct: 279 MITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSG 338

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F TD  + + LI+MYSKCGSV+ A +VF  + +K +    +++ G    GL  + L L +
Sbjct: 339 FKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFD 398

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHN 328
           E+    +KP+ +T+  +++  S +G      + F++M    G++P +  +  +I  L   
Sbjct: 399 EMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRA 458

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK-----------EIHGCAI 377
              +EA DT + M  +         +S+L       N+R G+           +  GC +
Sbjct: 459 GHLEEAKDTIERMPIKA---NKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYV 515

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           +            L +MYA  G   + R +
Sbjct: 516 I------------LSNMYAAAGLWEKVRQV 533



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 33/203 (16%)

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYA--KCGFISEARTLFDKMSERNTVTWNSMIF 424
           R   ++H  +I         V S L+ +YA  +   +  A +LFD + E   V+WN +I 
Sbjct: 29  REANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIK 88

Query: 425 GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ------E 478
               +   ++AI LF ++      D  +   VL  C  +G ++ G+++  ++       +
Sbjct: 89  CYIENQRSNDAIALFCKLLCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVD 148

Query: 479 KY-------------------KIMPRTEH-----YACMVDLLGRAGRLAEAYEMIKTMST 514
           K+                   K+  R E      +  ++D   R G +  A EM + M  
Sbjct: 149 KFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMP- 207

Query: 515 EPDLFVWGALLGACKNHGNIELA 537
           E D F W  L+      G +E A
Sbjct: 208 EKDSFSWTILIDGLSKSGKLEAA 230


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 176/553 (31%), Positives = 299/553 (54%), Gaps = 69/553 (12%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR------- 133
           + + ++  I  R L++GK LHA  I S +   T ++   +  Y++C+ +  AR       
Sbjct: 11  FRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 134 ------------------------MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE 169
                                    LFDE+P+ +   +  L  AYARRG  Q A  +F E
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M    L  + F +  ++ ACG   ++G   ++H+L +     +   V ++LI  YSK G 
Sbjct: 131 MREAFLDMDGFTLSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGF 188

Query: 230 VEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288
           +++A+++F  + E +D V+ N+MV  Y+Q    ++AL L  E+    +  ++ T  ++++
Sbjct: 189 LKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT 248

Query: 289 GFS----------------KSG---DQVMVSKLFQLMRAKG-------------VEPDVV 316
            F+                KSG   +  + S L  L    G               PD+V
Sbjct: 249 AFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLV 308

Query: 317 SWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
            W ++ISG  ++   +DEA + F+++   G  P   ++  ++ AC++ ++  +G+++HG 
Sbjct: 309 LWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGL 368

Query: 376 AIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
           A+ + +  + + V +AL+ MY+KCG + +A+TLFD M E NTV++NSMI G A HG   +
Sbjct: 369 ALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQ 428

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           ++ LF +M E      +++F +VL AC H G VE G+  FNMM++K+ I P   H++CM+
Sbjct: 429 SLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMI 488

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           DLLGRAG+L+EA  +I+T+  +P  F W ALLGAC+ HGN+ELA  AA  L +L+P +AA
Sbjct: 489 DLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAA 548

Query: 554 NNMLLTDLYANAG 566
             ++L ++Y++ G
Sbjct: 549 PYVMLANIYSDNG 561


>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Glycine max]
          Length = 522

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 175/498 (35%), Positives = 252/498 (50%), Gaps = 49/498 (9%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT-ECQNIHHARM 134
           + P      ++   +   L   K L A L   G A     A KLI F T    N+ +AR+
Sbjct: 1   MKPNLNEHVLDTLSKSNHLNHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLTLSNLTYARL 60

Query: 135 LFDEIPKTNIHRWIALTGAYARR-GYHQEAVTVF-HEMHIQGLKQNIFVIPSVLKACGHL 192
           +FD IP  N H + A+  AYA     H  A+++F H +  Q  + N F+ P  LK C   
Sbjct: 61  IFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTC--- 117

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEKDIVAMNAM 251
            +    E +H+ ++K  F     V ++L+D YSK  G +  AKKVFDEM ++ +V+  AM
Sbjct: 118 PESCAAESLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAM 177

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
           VS                                   GF++ GD     ++F  M    +
Sbjct: 178 VS-----------------------------------GFARVGDVESAVRVFGEM----L 198

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           + DV SW ++I+G   N    +  + F+ M+ +   P   T+   L AC     ++ G+ 
Sbjct: 199 DRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLGRW 258

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           IHG     G+  D  V +ALVDMY KCG + +AR +F+   E+   +WNSMI   A HG 
Sbjct: 259 IHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALHGQ 318

Query: 432 CDEAIELFNQMEERK---KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
            D AI +F QM E     + D ++F  +L AC H GLVE G   F MM ++Y I P+ EH
Sbjct: 319 SDSAIAIFEQMVEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEH 378

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           Y C++DLLGRAGR  EA +++K MS EPD  VWG+LL  CK HG  +LAE AAK L E++
Sbjct: 379 YGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEID 438

Query: 549 PESAANNMLLTDLYANAG 566
           P +    ++L ++Y   G
Sbjct: 439 PHNGGYRIMLANVYGELG 456



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 177/394 (44%), Gaps = 68/394 (17%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           LHAQ++ SG      + T L+  Y++    + +A+ +FDE+   ++  + A+   +AR G
Sbjct: 126 LHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARVG 185

Query: 159 YHQEAVTVFHEM--------------------HIQGL-----------KQNIFVIPSVLK 187
             + AV VF EM                      QG+           + N   +   L 
Sbjct: 186 DVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCALS 245

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           ACGH+  +  G  IH  V K+    D+FV+++L+DMY KCGS+ KA+KVF+   EK + +
Sbjct: 246 ACGHMGMLQLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTS 305

Query: 248 MNAMVSGYVQRGLATEALNLVEEI--GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
            N+M++ +   G +  A+ + E++  G   V+P+ VT+  L++  +  G        F++
Sbjct: 306 WNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEM 365

Query: 306 M-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           M +  G+EP +  +  +I  L      DEA D  K M  +   P      S+L  C    
Sbjct: 366 MVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSME---PDEVVWGSLLNGC---- 418

Query: 365 NMRRGKEIHG------CAIVMGVEGDLH---VRSALVDMYAKCGFISEARTLFDKMSERN 415
                 ++HG       A    +E D H    R  L ++Y + G   E R ++  + ++ 
Sbjct: 419 ------KVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQK 472

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
           +      + GC+        IE+ +Q+ +   LD
Sbjct: 473 SYK----VPGCS-------WIEVDDQVHQFYSLD 495


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 181/502 (36%), Positives = 265/502 (52%), Gaps = 29/502 (5%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT-ECQNI 129
           +R+F+ SP       + +   +  +  K LHA  I +G  +    A ++I F     ++I
Sbjct: 9   NRTFNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDI 68

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRG---YHQEAVTVFHEMHIQG-LKQNIFVIPSV 185
            +AR +F ++P+ N   W  +    A         EA+ +F  M   G +K N F  PSV
Sbjct: 69  DYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSV 128

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           LKAC   S +  G++IH L++K  F  D FV+S+L+ MY  C  +E A  +F     K++
Sbjct: 129 LKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC----KNV 184

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           V  +    G  Q            E+   +   NVV WN +I G  + GD      LF  
Sbjct: 185 VDFD----GSCQM-----------ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDE 229

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  + V    VSW  +ISG   N    EA + F+EM S    P   T+ S+LPA A    
Sbjct: 230 MPQRSV----VSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGA 285

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GK IH  A    +E D  + SALVDMY+KCG I EA  +F+ + +RN +TW+++I  
Sbjct: 286 LELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGA 345

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HG  ++AI  F+ M +     + +++  +L+AC H GLVE G+  F+ M +   + P
Sbjct: 346 FAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQP 405

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           R EHY CMVDLLGRAG L EA E+I+ M  EPD  +W ALLGACK H N+++ E  A+ L
Sbjct: 406 RIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETL 465

Query: 545 SELEPESAANNMLLTDLYANAG 566
            EL P  + + + L++LYA+ G
Sbjct: 466 MELAPHDSGSYVALSNLYASLG 487


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 267/505 (52%), Gaps = 35/505 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H   I + +     +A   +  Y++   I  A+ LF  IP  +   W ALT   A+
Sbjct: 455 GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 514

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +EAV +   M + G+  +     + + AC ++    TG++IH L +K+   ++  V
Sbjct: 515 NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAV 574

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            SSLID+YSK G VE ++K+F ++    IV +NA+++G+VQ     EA+ L +++    +
Sbjct: 575 GSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGL 634

Query: 277 KPNVVTWNTLISGFSKS-----GDQVM----------------VSKLFQLMRAKGVE--- 312
           KP+ VT+++++SG S S     G QV                 VS     +++K +E   
Sbjct: 635 KPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDAN 694

Query: 313 ------PD---VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                 PD   +  WT++ISG   N   D +  +F  M         AT +S+L AC+  
Sbjct: 695 KLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDV 754

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSM 422
                GKEIHG     G        SAL+DMY+KCG +  +   F ++ ++++ + WNSM
Sbjct: 755 TAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSM 814

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A +GY DEA+ LF +MEE + K D ++F  VL AC H GL+  G+  F  M++ Y 
Sbjct: 815 IVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYG 874

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + PR +HYAC +DLLGR G L EA E I  +   PD  VW   L AC+ H + E  +IAA
Sbjct: 875 LTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAA 934

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           + L ELEP+ ++  +LL+ L+A  G
Sbjct: 935 RKLVELEPQYSSTYVLLSSLHAATG 959



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 195/385 (50%), Gaps = 6/385 (1%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R R  Q+ + LH +++  G   L ++   L+  Y +   + +A        +       +
Sbjct: 78  RARHSQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASS 137

Query: 150 LTGAYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           L   +AR G   + +  F  +    G + + F +  VL AC  +  +  G ++H  V+K 
Sbjct: 138 LLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKS 197

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
            F +  F  ++L+DMY+KCG V  A++VFD +   D +  ++M++ Y + G   EAL L 
Sbjct: 198 GFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALF 257

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
             +      P+ VT  T+IS  + SG     + L + M      P  V+W +VISG   +
Sbjct: 258 SRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPT----PSTVAWNAVISGHAQS 313

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                    +K+M S G  PT +T +S+L A A+      G+++H  A++ G++ ++ V 
Sbjct: 314 GLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVG 373

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
           S+L+++YAKCG  S+A+ +FD   E+N V WN+M+ G   +   +EAI +F  M     +
Sbjct: 374 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 433

Query: 448 LDHLSFTAVLTACCHVGLVELGQRL 472
            D  +F ++L AC ++    LG+++
Sbjct: 434 TDEFTFVSILGACTYLSSFYLGKQV 458



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 237/517 (45%), Gaps = 45/517 (8%)

Query: 72  RSFHLSP--AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           RS+ L P  + ++  +      +A   G+ +HA  ++ GL     + + LI  Y +C   
Sbjct: 327 RSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCP 386

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A+ +FD   + NI  W A+   + +    +EA+ +F  M    L+ + F   S+L AC
Sbjct: 387 SDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGAC 446

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
            +LS    G+++H + +K+      FV ++ +DMYSK G++  AK +F  +  KD ++ N
Sbjct: 447 TYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWN 506

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT------------------------ 285
           A+  G  Q     EA+ +++ +    + P+ V+++T                        
Sbjct: 507 ALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKY 566

Query: 286 -----------LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                      LI  +SK GD     K+F  + A  + P      ++I+G V N   DEA
Sbjct: 567 GICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVP----INALIAGFVQNNNEDEA 622

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVD 393
              F+++L  G  P+S T SSIL  C+ + N   GK++H   +  GV   D  +  +L  
Sbjct: 623 IQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAG 682

Query: 394 MYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHL 451
           +Y K   + +A  L  +M + +N   W ++I G A +GY D ++  F +M     + D  
Sbjct: 683 IYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEA 742

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F +VL AC  V     G+ +  ++  K          + ++D+  + G +  ++E  K 
Sbjct: 743 TFASVLKACSDVTAFADGKEIHGLIT-KSGFGSYETATSALIDMYSKCGDVISSFEAFKE 801

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           +  + D+  W +++     +G  + A +  + + EL+
Sbjct: 802 LKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQ 838



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 216/488 (44%), Gaps = 40/488 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           +S  I  Y R    Q    L +++   G A        +I+       + HA  L  ++P
Sbjct: 237 WSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMP 296

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +   W A+   +A+ G     + ++ +M   GL        S+L A  ++     G++
Sbjct: 297 TPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQ 356

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H+  + H    + FV SSLI++Y+KCG    AK VFD   EK+IV  NAM++G+VQ  L
Sbjct: 357 MHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNEL 416

Query: 261 ATEALNLVEEIGTPRVKPNVVTW-----------------------------------NT 285
             EA+ + + +    ++ +  T+                                   N 
Sbjct: 417 PEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANA 476

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
            +  +SK G       LF L+  K    D +SW ++  GL  N   +EA    K M   G
Sbjct: 477 TLDMYSKYGAIGDAKALFSLIPYK----DSISWNALTVGLAQNLEEEEAVCMLKRMRLHG 532

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P   + S+ + AC++      GK+IH  AI  G+  +  V S+L+D+Y+K G +  +R
Sbjct: 533 ITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSR 592

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVG 464
            +F ++   + V  N++I G   +   DEAI+LF Q +++  K   ++F+++L+ C    
Sbjct: 593 KIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSL 652

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
              +G+++     +   +   T     +  +  ++  L +A +++  M    +LF W A+
Sbjct: 653 NSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAI 712

Query: 525 LGACKNHG 532
           +     +G
Sbjct: 713 ISGYAQNG 720


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 263/478 (55%), Gaps = 11/478 (2%)

Query: 92  RALQSGKILHAQLIV-SGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           + L+S K +HA+L++ S +A    +  KL+  Y+      +A  +FDEI + N + W +L
Sbjct: 13  KTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSL 72

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              Y     + EA ++F +M  + +    F I SVLKA   L+    G+ ++        
Sbjct: 73  IHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMC 132

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D    + +I  Y     V+ A+K FD M E+++V+  +M+ GYV+ G   EA  L + 
Sbjct: 133 EKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDS 192

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSK-LFQLMRAKGVEPDVVSWTSVISGLVHNF 329
           +       ++ +WN ++SG+   GD    ++ LF  M  K    ++V+W+++I G   N 
Sbjct: 193 MPVK----DLASWNVMVSGYMDIGDYTNGARCLFDQMPMK----NLVTWSTMIGGYARNG 244

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
              +A + F+    Q   P    I  I+ AC+    +   + I    +   +  DL V +
Sbjct: 245 QPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFT 304

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           +L+DMYAKCG I +A  +F+    ++ + +++MI   ANHG   +AI LF++M+    K 
Sbjct: 305 SLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKP 364

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++F  VLTAC H GLV+ G++ F  M E++ I P  +HYAC+VDLLGR G L EAY +
Sbjct: 365 DSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNL 424

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           I+ M   P   VWGALL AC+ H N++LAE+AA  L ++EP+++ N +LL+++YA AG
Sbjct: 425 IRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAG 482


>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 151/476 (31%), Positives = 264/476 (55%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T L+ FY +   I +A M+FD +   ++  W  +  
Sbjct: 289 GVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIIS 348

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  + A+ +   M ++ LK +   + +++ A     ++  G+++    ++HSF +
Sbjct: 349 GYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFES 408

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+++DMY+KCGS+  AKKVFD   EKD++  N +++ Y + GL+ E L L   + 
Sbjct: 409 DIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQ 468

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G+      +F  M++ G+ P+++SWT++++G+V N C++
Sbjct: 469 LEGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMNGMVQNGCSE 528

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M   G  P + +I+  L ACA+ A++  G+ IHG  I  +     + + ++L
Sbjct: 529 EAILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHSSSVSIETSL 588

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG I++A  +F          +N+MI   A +G   EAI L+  +E    K D+
Sbjct: 589 VDMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLKEAIALYRSLEGVGLKPDN 648

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++ T VL+AC H G       +   M  K+ + P  EHY  MVDLL  AG+  +A  +I+
Sbjct: 649 ITITNVLSACNHAGDNNQATEIVTEMVSKHGMNPCLEHYGLMVDLLASAGQTDKALRLIE 708

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  +  +L+ +C      EL +  ++ L E EP+++ N + +++ YA  G
Sbjct: 709 EMPYKPDARMIQSLVASCNKQPKSELVDYLSRQLIESEPDNSGNYVTISNAYAVEG 764



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 151/534 (28%), Positives = 260/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +GK +HA+++ +G   A+   I TKL+ FY +C  +
Sbjct: 64  RNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAL 123

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A +LF ++   N+  W A+ G   R G  + A+  F EM    +  + FV+P+V KAC
Sbjct: 124 DIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKAC 183

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V+K       FV SSL DMY KCG ++ A+KVFDE+ E+++VA N
Sbjct: 184 GALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWN 243

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L  ++    V+P  VT +T +S  +  G               
Sbjct: 244 ALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVN 303

Query: 295 ----DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + L             +++  + ++ DVV+W  +ISG V     + A    
Sbjct: 304 GLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISGYVQQGLVENAIYMC 363

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+++++ A A   N++ GKE+    I    E D+ + S ++DMYAKC
Sbjct: 364 QLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKC 423

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD  +E++ + WN+++   A  G   E + LF  M+ E    + +++  ++
Sbjct: 424 GSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQLEGVPPNVITWNLII 483

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V+  + +F  MQ    I P    +  M++ + + G   EA   ++ M     
Sbjct: 484 LSLLRNGEVDEAKDMFLQMQSS-GIFPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGL 542

Query: 515 EPDLFVWGALLGACKNHGNIELAE-IAAKHLSELEPESAAN-NMLLTDLYANAG 566
            P+       L AC N  ++     I    +  L+  S+ +    L D+YA  G
Sbjct: 543 RPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHSSSVSIETSLVDMYAKCG 596



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 205/415 (49%), Gaps = 44/415 (10%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G  +EA+++  EM  + L+    +   +L+ C +  D+ TG++IH+ +LK+   +  +
Sbjct: 47  KNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKN 106

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVE 269
            ++ + L+  Y+KC +++ A+ +F ++  +++ +  A++    + GL   AL     ++E
Sbjct: 107 EYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLE 166

Query: 270 EIGTPR--VKPNV------VTWNTLISGFS----KSG--DQVMVSKLFQLMRAK-GV--- 311
               P   V PNV      + W+    G      K+G  D V V+     M  K GV   
Sbjct: 167 NEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDD 226

Query: 312 ---------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                    E +VV+W +++ G V N  N+EA   F +M  +G  PT  T+S+ L A A+
Sbjct: 227 ARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASAN 286

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H  AIV G+E D  + ++L++ Y K G I  A  +FD+M +++ VTWN +
Sbjct: 287 MGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLI 346

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G    G  + AI +   M  E+ K D ++   +++A      ++LG+ +     + Y 
Sbjct: 347 ISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEV-----QCYC 401

Query: 482 IMPRTEH----YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           I    E      + ++D+  + G + +A ++  + + E DL +W  LL A    G
Sbjct: 402 IRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDS-TAEKDLILWNTLLAAYAESG 455



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 4/253 (1%)

Query: 93  ALQSGKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +L  G+ +H  +I +   +    I T L+  Y +C +I+ A  +F     + +  + A+ 
Sbjct: 561 SLHFGRSIHGYIIRNLQHSSSVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLYNAMI 620

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSF 210
            AYA  G  +EA+ ++  +   GLK +   I +VL AC H  D     E +  +V KH  
Sbjct: 621 SAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDNNQATEIVTEMVSKHGM 680

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                    ++D+ +  G  +KA ++ +EM  K    M   +     +   +E ++ +  
Sbjct: 681 NPCLEHYGLMVDLLASAGQTDKALRLIEEMPYKPDARMIQSLVASCNKQPKSELVDYLSR 740

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNF 329
                   N   + T+ + ++  G    V K+ ++M+AKG++     SW  +    VH F
Sbjct: 741 QLIESEPDNSGNYVTISNAYAVEGSWDEVVKMREIMKAKGLKKKPGCSWIQIKGEGVHVF 800

Query: 330 -CNDEAFDTFKEM 341
             ND+      E+
Sbjct: 801 VANDKTHIRINEI 813



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 14/235 (5%)

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
           + + P   S+   +S L  N    EA     EM  +           IL  C    ++  
Sbjct: 29  QALNPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCT 88

Query: 369 GKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           GK+IH   +  G     + ++ + LV  YAKC  +  A  LF K+  RN  +W ++I   
Sbjct: 89  GKQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVK 148

Query: 427 ANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
              G C+ A+  F +M E +   D+     V  AC  +     G+ +       Y +   
Sbjct: 149 CRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHG-----YVVKAG 203

Query: 486 TEH----YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIE 535
            E      + + D+ G+ G L +A ++   +  E ++  W AL+ G  +N  N E
Sbjct: 204 LEDCVFVASSLADMYGKCGVLDDARKVFDEIP-ERNVVAWNALMVGYVQNGMNEE 257


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 162/504 (32%), Positives = 261/504 (51%), Gaps = 71/504 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQ--------------------------NIH 130
           G+ +H+ ++  GL     +A  ++  Y +C                           N H
Sbjct: 183 GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTH 242

Query: 131 HARM-----LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPS 184
             RM     LF+ +P  +I  W A+   Y + G   +A+ +F  M H   +  + F I S
Sbjct: 243 LGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITS 302

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL AC +L ++  G+++H+ +L+     ++ V ++LI  Y+K GSVE A+++ D+ +E D
Sbjct: 303 VLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETD 362

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +                                 NV+++  L+ G+ K GD     ++F 
Sbjct: 363 L---------------------------------NVISFTALLEGYVKIGDMESAREMFG 389

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           +M  +    DVV+WT++I G   N  NDEA D F+ M++ G  P S T++++L  CAS A
Sbjct: 390 VMNNR----DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLA 445

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTWNSMI 423
            +  GK+IH  AI   +E    V +A++ MYA+ G    AR +FD++  R  T+TW SMI
Sbjct: 446 CLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMI 505

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              A HG  +EA+ LF +M     + D +++  VL+AC H G V  G+R ++ ++ +++I
Sbjct: 506 VALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQI 565

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P   HYACMVDLL RAG  +EA E I+ M  EPD   WG+LL AC+ H N ELAE+AA+
Sbjct: 566 APEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAE 625

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L  ++P ++     + ++Y+  G
Sbjct: 626 KLLSIDPNNSGAYSAIANVYSACG 649



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 217/485 (44%), Gaps = 54/485 (11%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQN----IHHARMLFDEIP--KTNIHRWIA 149
           +G+ +HA+ + +GL     +   L+++Y E       +  AR LFDEIP  + N+  W +
Sbjct: 44  AGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNS 103

Query: 150 LTGAYARRGYHQEAVTVFHEM-------------------------------HIQGLKQN 178
           L   +A+ G   +A  VF EM                                  G    
Sbjct: 104 LLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT 163

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F + +VL +C        G K+HS V+K   G+   V +S+++MY KCG  E A  VF+
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFE 223

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M  + + + NAMVS     G     ++L E +       ++V+WN +I+G++++G    
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLG----RMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAK 279

Query: 299 VSKLF-QLMRAKGVEPDVVSWTSVISGLVHNFCNDE-AFDTFKEMLSQGFCPTSATISSI 356
             KLF +++    + PD  + TSV+S    N  N          +L       S   +++
Sbjct: 280 ALKLFSRMLHESSMAPDEFTITSVLSACA-NLGNVRIGKQVHAYILRTEMAYNSQVTNAL 338

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRS--ALVDMYAKCGFISEARTLFDKMSER 414
           +   A + ++   + I    +   +E DL+V S  AL++ Y K G +  AR +F  M+ R
Sbjct: 339 ISTYAKSGSVENARRI----MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNR 394

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V W +MI G   +G  DEAI+LF  M     + +  +  AVL+ C  +  ++ G+++ 
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIH 454

Query: 474 NMMQEKYKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              +    ++ R+   +  ++ +  R+G    A  M   +    +   W +++ A   HG
Sbjct: 455 --CRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 533 NIELA 537
             E A
Sbjct: 513 QGEEA 517



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 180/396 (45%), Gaps = 86/396 (21%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK----CGSVEKAKKVFDEM 240
           +L+ C   ++ G G  IH+  +K      A++ ++L+  Y +     G +  A+++FDE+
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
                                            P  + NV TWN+L+S F+KSG      
Sbjct: 92  ---------------------------------PLARRNVFTWNSLLSMFAKSG------ 112

Query: 301 KLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
              +L  A+GV     E D VSWT ++ GL       EA  T  +M + GF PT  T+++
Sbjct: 113 ---RLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTN 169

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART--------- 406
           +L +CA       G+++H   + +G+   + V +++++MY KCG    A T         
Sbjct: 170 VLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRS 229

Query: 407 ----------------------LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-- 442
                                 LF+ M  R+ V+WN+MI G   +G   +A++LF++M  
Sbjct: 230 VSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLH 289

Query: 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           E     D  + T+VL+AC ++G V +G+++   +  + ++   ++    ++    ++G +
Sbjct: 290 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYIL-RTEMAYNSQVTNALISTYAKSGSV 348

Query: 503 AEAYE-MIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             A   M ++M T+ ++  + ALL      G++E A
Sbjct: 349 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESA 384



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 124/272 (45%), Gaps = 20/272 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           L  GK +H + I S L R + ++  +IT Y    +   AR +FD++  +     W ++  
Sbjct: 447 LDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-KHSFG 211
           A A+ G  +EAV +F EM   G++ +      VL AC H   +  G++ +  +  +H   
Sbjct: 507 ALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIA 566

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +    + ++D+ ++ G   +A++    M VE D +A  +++S       A  A    E+
Sbjct: 567 PEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEK 626

Query: 271 IGTPRVKPNVV-TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHN 328
           + +  + PN    ++ + + +S  G     +++++  + K V  +   SWT + S  +H 
Sbjct: 627 LLS--IDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSK-IHV 683

Query: 329 FCNDE------------AFDTFKEMLSQGFCP 348
           F  D+            A   ++E+   GF P
Sbjct: 684 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVP 715


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 264/476 (55%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+G+     + T L+ FY +   I +A M+FD + + ++  W  +  
Sbjct: 289 GVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIIS 348

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+ +   M ++ LK +   + +++ A     ++  G+++    ++HSF +
Sbjct: 349 GYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFES 408

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+++DMY+KCGS+  AKKVFD  VEKD++  N +++ Y + GL+ EAL L   + 
Sbjct: 409 DIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQ 468

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G       +F  M++ G+ P+++SWT++++G+V N C++
Sbjct: 469 LEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSE 528

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL-HVRSAL 391
           EA    ++M   G  P + +I+  L ACA  A++  G+ IHG  I       L  + ++L
Sbjct: 529 EAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSL 588

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG I++A  +F           N+MI   A +G   EAI L+  +E    K D+
Sbjct: 589 VDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDN 648

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++ T VL+AC H G +     +F  +  K  + P  EHY  MVDLL  AG   +A  +I+
Sbjct: 649 ITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIE 708

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  +  +L+ +C      EL +  ++ L E EPE++ N + +++ YA  G
Sbjct: 709 EMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEG 764



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 257/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +GK +HA+++ +G   AR   I TKL+ FY +C  +
Sbjct: 64  RNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDAL 123

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A +LF ++   N+  W A+ G   R G  + A+  F EM    +  + FV+P+V KAC
Sbjct: 124 EIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKAC 183

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V+K       FV SSL DMY KCG ++ A KVFDE+ +++ VA N
Sbjct: 184 GALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWN 243

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G   EA+ L  ++    V+P  VT +T +S  +  G               
Sbjct: 244 ALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVN 303

Query: 295 ----DQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + L       G+            E DVV+W  +ISG V     ++A    
Sbjct: 304 GMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMC 363

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+++++ A A   N++ GKE+    I    E D+ + S ++DMYAKC
Sbjct: 364 QLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKC 423

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD   E++ + WN+++   A  G   EA+ LF  M+ E    + +++  ++
Sbjct: 424 GSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLII 483

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V+  + +F  MQ    I+P    +  M++ + + G   EA   ++ M     
Sbjct: 484 LSLLRNGQVDEAKDMFLQMQSS-GIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGL 542

Query: 515 EPDLFVWGALLGACKNHGNIELAE-IAAKHLSELEPESAAN-NMLLTDLYANAG 566
            P+ F     L AC +  ++ +   I    +  L+  S  +    L D+YA  G
Sbjct: 543 RPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCG 596



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 210/441 (47%), Gaps = 48/441 (10%)

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
           HH          +  HR      +  + G  +EA+++  EM  + L+    +   +L+ C
Sbjct: 25  HHDEQAHSPSSTSYFHR----VSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGC 80

Query: 190 GHLSDIGTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
            +  D+ TG++IH+ +LK+   +  + ++ + L+  Y+KC ++E A+ +F ++  +++ +
Sbjct: 81  VYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFS 140

Query: 248 MNAMVSGYVQRGLATEAL----NLVEEIGTPR--VKPNV------VTWNTLISGFS---- 291
             A++    + GL   AL     ++E    P   V PNV      + W+    G      
Sbjct: 141 WAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVV 200

Query: 292 KSG--DQVMVSKLFQLMRAK-GVEPD------------VVSWTSVISGLVHNFCNDEAFD 336
           KSG  D V V+     M  K GV  D             V+W +++ G V N  N+EA  
Sbjct: 201 KSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIR 260

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M  QG  PT  T+S+ L A A+   +  GK+ H  AIV G+E D  + ++L++ Y 
Sbjct: 261 LFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYC 320

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTA 455
           K G I  A  +FD+M E++ VTWN +I G    G  ++AI +   M  E+ K D ++   
Sbjct: 321 KVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLAT 380

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEAYEMIKT 511
           +++A      ++LG+ +     + Y I    E      + ++D+  + G + +A ++  +
Sbjct: 381 LMSAAARTENLKLGKEV-----QCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDS 435

Query: 512 MSTEPDLFVWGALLGACKNHG 532
            + E DL +W  LL A    G
Sbjct: 436 -TVEKDLILWNTLLAAYAESG 455



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 13/237 (5%)

Query: 93  ALQSGKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLF-----DEIPKTNIHR 146
           +L  G+ +H  +I +   + L  I T L+  Y +C +I+ A  +F      E+P +N   
Sbjct: 561 SLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSN--- 617

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LV 205
             A+  AYA  G  +EA+ ++  +   GLK +   I +VL AC H  DI    +I + +V
Sbjct: 618 --AMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIV 675

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            K S          ++D+ +  G  EKA ++ +EM  K    M   +     +   TE +
Sbjct: 676 SKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELV 735

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           + +          N   + T+ + ++  G    V K+ ++M+AKG++     SW  +
Sbjct: 736 DYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQI 792



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 20/234 (8%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P   S+   +S L  N    EA     EM  +           IL  C    ++  GK+I
Sbjct: 33  PSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQI 92

Query: 373 HGCAIVMGVEGDLHVR-----SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           H   +     GD + R     + LV  YAKC  +  A  LF K+  RN  +W ++I    
Sbjct: 93  HARILK---NGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKC 149

Query: 428 NHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
             G C+ A+  F +M E +   D+     V  AC  +     G+ +       Y +    
Sbjct: 150 RIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHG-----YVVKSGL 204

Query: 487 EH----YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIE 535
           E      + + D+ G+ G L +A ++   +  + +   W AL+ G  +N  N E
Sbjct: 205 EDCVFVASSLADMYGKCGVLDDASKVFDEIP-DRNAVAWNALMVGYVQNGKNEE 257


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 169/520 (32%), Positives = 283/520 (54%), Gaps = 40/520 (7%)

Query: 78  PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
           PA  +ER E +        G  +H  ++ SGL  +  +   L+  Y +  ++  +  +F+
Sbjct: 221 PACGTERDEGF--------GLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFN 272

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
            + + N   W +  G +A  G+H++ + +F  M    +      + S+L A   L     
Sbjct: 273 GMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHL 332

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G+++H   ++ +  +D F+ +SL+DMY+K G +EKA  +F+ +  +++V+ NAM++   Q
Sbjct: 333 GKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQ 392

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV--------MVSKLF- 303
            G  TEA +LV E+      PN  T   L+   S     K G Q+        ++S LF 
Sbjct: 393 NGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFV 452

Query: 304 ------------QLMRAKGV----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
                       QL  A+ +    E D VS+ ++I G   + C  E+   F++M S G  
Sbjct: 453 SNALIDVYAKCGQLSVAQDIFDRSEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIE 512

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             + +    L ACA+ +  ++GKEIHG  +   +     + ++L+D+Y K G ++ A  +
Sbjct: 513 YDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKI 572

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLV 466
           F++++ ++  +WN+MI G   HG  D A ELF+ M++     DH+S+ AVL+AC H GLV
Sbjct: 573 FNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLV 632

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           + G++ F+ M  +  I P+  HYACMVDLLGRAG+L+E+ E+I  M    +  VWGALLG
Sbjct: 633 DRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALLG 691

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +C+ HG+IELA +AA+HL EL+PE +    LL ++Y+ +G
Sbjct: 692 SCRIHGDIELARLAAEHLFELKPEHSGYYTLLRNMYSESG 731



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 234/476 (49%), Gaps = 40/476 (8%)

Query: 97  GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G  LHA  +  GL      A   L+TFY        AR +FDE+P  +I  W +L  A  
Sbjct: 130 GAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALL 189

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
             G  ++A      M   G+  N+  + SV+ ACG   D G G  +H LVLK    +   
Sbjct: 190 TNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVN 249

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++L+DMY K G +E + +VF+ M EK+ V+ N+ +  +   G   + L +   +    
Sbjct: 250 LGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHE 309

Query: 276 VKPNVVTWNTLIS-----GFSKSGDQV---------------------MVSKLFQLMRAK 309
           V P  VT ++L+      G+   G +V                     M +K   L +A 
Sbjct: 310 VTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKAS 369

Query: 310 GV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            +       +VVSW ++I+ L  N    EAF    EM   G CP S T+ ++LPAC+  A
Sbjct: 370 AIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVA 429

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           +++ GK+IH  +I   +  DL V +AL+D+YAKCG +S A+ +FD+ SE++ V++N++I 
Sbjct: 430 SVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIV 488

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G +    C E++ LF QM     + D +SF   L+AC ++   + G+ +  ++  +   +
Sbjct: 489 GYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRR---L 545

Query: 484 PRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             T  +    ++DL  + G LA A ++   + T  D+  W  ++     HG I++A
Sbjct: 546 LNTHPFLANSLLDLYTKGGMLATASKIFNRI-TRKDVASWNTMILGYGMHGQIDVA 600


>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
          Length = 807

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 264/476 (55%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T ++ FY +   I +A M+FD + + ++  W  L  
Sbjct: 265 GIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLIS 324

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  +EA+ +   M  + LK +   + +++ A     ++  G++I    ++H   +
Sbjct: 325 GYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLES 384

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+KCGS+  AKKVFD  V+KD++  N ++S Y   GL+ EAL L  E+ 
Sbjct: 385 DIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQ 444

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G      ++F  M++ G+ P+++SWT++++GLV N C++
Sbjct: 445 LESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSE 504

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M   G  P + TI+  L AC + A++  G+ IHG  I          + ++L
Sbjct: 505 EAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRSIHGYIIRNQQYSFSASIETSL 564

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG I++A  +F          +N+MI   A +G   EAI L+  +E+   K D+
Sbjct: 565 VDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDN 624

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++ T++L+AC +   V     +F  M  K+ + P  EHY  MVDLL  AG   +A  +++
Sbjct: 625 ITITSLLSACNYGRDVNQAIEVFRDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLME 684

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  +  +L  +C      EL E  +KHL E EP+++ N +++++ YA  G
Sbjct: 685 EMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPDNSGNYVMISNAYAVEG 740



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 259/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +G+ +HAQ++  G   AR   I TKL+ FY +C  +
Sbjct: 40  RNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDAL 99

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A++LF ++   N+  W A+ G   R G  + A+  F EM   G+  + FV+P+V KAC
Sbjct: 100 EIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKAC 159

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V K       FV SSL DMY KCG ++ A+KVFD + +++ VA N
Sbjct: 160 GALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWN 219

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L+ E+    ++P  VT +T +S  +  G               
Sbjct: 220 ALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVN 279

Query: 295 ----DQVMVSKLFQLMRAKG------------VEPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + +       G            +E DVV+W  +ISG V     +EA    
Sbjct: 280 GLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMC 339

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++ A  S  N++ GKEI    I  G+E D+ + S  VDMYAKC
Sbjct: 340 QLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKC 399

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I  A+ +FD   +++ + WN+++   A+ G   EA+ LF +M+ E    + +++  ++
Sbjct: 400 GSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLII 459

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V   + +F  MQ    I P    +  M++ L + G   EA   ++ M     
Sbjct: 460 LSLLRNGQVNEAKEMFLQMQSS-GIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGL 518

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
            P+ F     L AC N  ++        ++  ++    SA+    L D+YA  G
Sbjct: 519 RPNAFTITVALSACVNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCG 572



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 227/472 (48%), Gaps = 16/472 (3%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  +  +GL     +A+ L   Y +C  +  AR +FD IP  N   W AL   Y +
Sbjct: 168 GRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQ 227

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  EM  +G++     + + L A  ++  I  G++ H++ + +    D  +
Sbjct: 228 NGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNIL 287

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S+++ Y K G +E A+ +FD M+EKD+V  N ++SGYVQ+GL  EA+ + + +    +
Sbjct: 288 GTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENL 347

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           K + VT +TL+S  + + +  +  ++       G+E D+V  ++ +           A  
Sbjct: 348 KFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKK 407

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F   + +     +  +S+   +  S   +R   E+     +  V  ++   + ++    
Sbjct: 408 VFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQ----LESVPPNVITWNLIILSLL 463

Query: 397 KCGFISEARTLFDKMSER----NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           + G ++EA+ +F +M       N ++W +M+ G   +G  +EAI    +M+E   + +  
Sbjct: 464 RNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAF 523

Query: 452 SFTAVLTACCHVGLVELGQRL--FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           + T  L+AC ++  +  G+ +  + +  ++Y      E    +VD+  + G + +A E +
Sbjct: 524 TITVALSACVNLASLHFGRSIHGYIIRNQQYSFSASIE--TSLVDMYAKCGDINKA-ERV 580

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLT 559
                  +L ++ A++ A   +G +  A    + L +  ++P++     LL+
Sbjct: 581 FGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLS 632



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 211/444 (47%), Gaps = 47/444 (10%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G  +EA+++  EM  + ++    +   +L+ C +  D+ TG++IH+ +LK    +  +
Sbjct: 23  KNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARN 82

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVE 269
            ++ + L+  Y+KC ++E A+ +F ++  +++ +  A++    + GL   AL     ++E
Sbjct: 83  EYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLE 142

Query: 270 EIGTPR--VKPNV------VTWNTLISG--------------FSKSGDQVMVSKLFQLMR 307
               P   V PNV      + W+    G              F  S    M  K   L  
Sbjct: 143 NGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDD 202

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V     + + V+W +++ G V N   +EA     EM  +G  PT  T+S+ L A A+
Sbjct: 203 ARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASAN 262

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H  AIV G+E D  + +++++ Y K G I  A  +FD M E++ VTWN +
Sbjct: 263 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLL 322

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G    G  +EAI +   M  E  K D ++ + +++A      ++LG+ +     + Y 
Sbjct: 323 ISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEI-----QCYC 377

Query: 482 IMPRTEHYACM----VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           I    E    +    VD+  + G +  A ++  + + + DL +W  LL A  + G   L+
Sbjct: 378 IRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDS-TVQKDLILWNTLLSAYADSG---LS 433

Query: 538 EIAAKHLSELEPESAANNMLLTDL 561
             A +   E++ ES   N++  +L
Sbjct: 434 GEALRLFYEMQLESVPPNVITWNL 457



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 14/244 (5%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P   S+   +S L  N    EA     EM  +           IL  C    ++  G++I
Sbjct: 9   PLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQI 68

Query: 373 HGCAIVMGVEGDLHVR-----SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           H   +    +GD + R     + LV  YAKC  +  A+ LF K+  RN  +W ++I    
Sbjct: 69  HAQILK---KGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 125

Query: 428 NHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
             G  + A+  F +M E     D+     V  AC  +     G+ +   +  K  +    
Sbjct: 126 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVA-KAGLHHCV 184

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
              + + D+ G+ G L +A ++   +  + +   W AL+     +G   + E A + LSE
Sbjct: 185 FVASSLADMYGKCGVLDDARKVFDYIP-DRNAVAWNALMVGYVQNG---MYEEAIRLLSE 240

Query: 547 LEPE 550
           +  E
Sbjct: 241 MRKE 244


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 267/505 (52%), Gaps = 35/505 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H   I + +     +A   +  Y++   I  A+ LF  IP  +   W ALT   A+
Sbjct: 445 GKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 504

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +EAV +   M + G+  +     + + AC ++    TG++IH L +K+   ++  V
Sbjct: 505 NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAV 564

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            SSLID+YSK G VE ++K+F ++    IV +NA+++G+VQ     EA+ L +++    +
Sbjct: 565 GSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGL 624

Query: 277 KPNVVTWNTLISGFSKS-----GDQVM----------------VSKLFQLMRAKGVE--- 312
           KP+ VT+++++SG S S     G QV                 VS     +++K +E   
Sbjct: 625 KPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDAN 684

Query: 313 ------PD---VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                 PD   +  WT++ISG   N   D +  +F  M         AT +S+L AC+  
Sbjct: 685 KLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDV 744

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSM 422
                GKEIHG     G        SAL+DMY+KCG +  +   F ++ ++++ + WNSM
Sbjct: 745 TAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSM 804

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A +GY DEA+ LF +MEE + K D ++F  VL AC H GL+  G+  F  M++ Y 
Sbjct: 805 IVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGPMRKVYG 864

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + PR +HYAC +DLLGR G L EA E I  +   PD  VW   L AC+ H + E  +IAA
Sbjct: 865 LTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAA 924

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           + L ELEP+ ++  +LL+ L+A  G
Sbjct: 925 RKLVELEPQYSSTYVLLSSLHAATG 949



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 195/385 (50%), Gaps = 6/385 (1%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R R  Q+ + LH +++  G   L ++   L+  Y +   + +A        +       +
Sbjct: 68  RARHSQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASS 127

Query: 150 LTGAYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           L   +AR G   + +  F  +    G + + F +  VL AC  +  +  G ++H  V+K 
Sbjct: 128 LLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKS 187

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
            F +  F  ++L+DMY+KCG V  A++VFD +   D +  ++M++ Y + G   EAL L 
Sbjct: 188 GFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALF 247

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
             +      P+ VT  T+IS  + SG     + L + M      P  V+W +VISG   +
Sbjct: 248 SRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPT----PSTVAWNAVISGHAQS 303

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                    +K+M S G  PT +T +S+L A A+      G+++H  A++ G++ ++ V 
Sbjct: 304 GLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVG 363

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
           S+L+++YAKCG  S+A+ +FD   E+N V WN+M+ G   +   +EAI +F  M     +
Sbjct: 364 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 423

Query: 448 LDHLSFTAVLTACCHVGLVELGQRL 472
            D  +F ++L AC ++    LG+++
Sbjct: 424 TDEFTFVSILGACTYLSSFYLGKQV 448



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 237/517 (45%), Gaps = 45/517 (8%)

Query: 72  RSFHLSP--AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           RS+ L P  + ++  +      +A   G+ +HA  ++ GL     + + LI  Y +C   
Sbjct: 317 RSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCP 376

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A+ +FD   + NI  W A+   + +    +EA+ +F  M    L+ + F   S+L AC
Sbjct: 377 SDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGAC 436

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
            +LS    G+++H + +K+      FV ++ +DMYSK G++  AK +F  +  KD ++ N
Sbjct: 437 TYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWN 496

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT------------------------ 285
           A+  G  Q     EA+ +++ +    + P+ V+++T                        
Sbjct: 497 ALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKY 556

Query: 286 -----------LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                      LI  +SK GD     K+F  + A  + P      ++I+G V N   DEA
Sbjct: 557 GICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVP----INALIAGFVQNNNEDEA 612

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVD 393
              F+++L  G  P+S T SSIL  C+ + N   GK++H   +  GV   D  +  +L  
Sbjct: 613 IQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAG 672

Query: 394 MYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHL 451
           +Y K   + +A  L  +M + +N   W ++I G A +GY D ++  F +M     + D  
Sbjct: 673 IYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEA 732

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F +VL AC  V     G+ +  ++  K          + ++D+  + G +  ++E  K 
Sbjct: 733 TFASVLKACSDVTAFADGKEIHGLIT-KSGFGSYETATSALIDMYSKCGDVISSFEAFKE 791

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           +  + D+  W +++     +G  + A +  + + EL+
Sbjct: 792 LKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQ 828



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 216/488 (44%), Gaps = 40/488 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           +S  I  Y R    Q    L +++   G A        +I+       + HA  L  ++P
Sbjct: 227 WSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMP 286

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +   W A+   +A+ G     + ++ +M   GL        S+L A  ++     G++
Sbjct: 287 TPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQ 346

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H+  + H    + FV SSLI++Y+KCG    AK VFD   EK+IV  NAM++G+VQ  L
Sbjct: 347 MHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNEL 406

Query: 261 ATEALNLVEEIGTPRVKPNVVTW-----------------------------------NT 285
             EA+ + + +    ++ +  T+                                   N 
Sbjct: 407 PEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANA 466

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
            +  +SK G       LF L+  K    D +SW ++  GL  N   +EA    K M   G
Sbjct: 467 TLDMYSKYGAIGDAKALFSLIPYK----DSISWNALTVGLAQNLEEEEAVCMLKRMRLHG 522

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P   + S+ + AC++      GK+IH  AI  G+  +  V S+L+D+Y+K G +  +R
Sbjct: 523 ITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSR 582

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVG 464
            +F ++   + V  N++I G   +   DEAI+LF Q +++  K   ++F+++L+ C    
Sbjct: 583 KIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSL 642

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
              +G+++     +   +   T     +  +  ++  L +A +++  M    +LF W A+
Sbjct: 643 NSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAI 702

Query: 525 LGACKNHG 532
           +     +G
Sbjct: 703 ISGYAQNG 710


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 285/570 (50%), Gaps = 86/570 (15%)

Query: 64  HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFY 123
           HY  P +  S     AA+ E I++             H  ++  GL     I   LI FY
Sbjct: 131 HYTFPFV-LSGCTKIAAFCEGIQV-------------HGSVVKMGLEEDVFIQNCLIHFY 176

Query: 124 TECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIP 183
            EC ++ H   +F+ + + N+  W +L   YAR    +EAV++F EM   G++ +   + 
Sbjct: 177 AECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMV 236

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
            V+ AC  L D+  GE++ + + +     +  +V++L+DMY KCG+++ AK++FDE V++
Sbjct: 237 CVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDR 296

Query: 244 -----------------------------------DIVAMNAMVS--------------- 253
                                              D V M + +S               
Sbjct: 297 NLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCH 356

Query: 254 GYVQRG-------LATEALNLVEEIGTPRV---------KPNVVTWNTLISGFSKSGDQV 297
           GYV R        +    +++  + G P +            VV+WN+L +GF ++GD  
Sbjct: 357 GYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVE 416

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F  +     E + V W ++ISGLV     ++A + F+EM  +G      T+  I 
Sbjct: 417 SAWEVFNQIP----ERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIA 472

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC         K +H      G+  D+ + +ALVDM+A+CG    A  +F+KM+ER+  
Sbjct: 473 SACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVS 532

Query: 418 TWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            W + I   A  G  + A  LFNQM  +  K D + F  VLTAC H G VE G  +F++M
Sbjct: 533 AWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM 592

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            E + I P+ EHY CMVDLLGRAG L EA+++IK+M  EP+  VWG+LL AC+ H N+E+
Sbjct: 593 -EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEM 651

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           A  AA+ ++EL P+ A  ++LL+++YA+AG
Sbjct: 652 ATYAAERINELAPQRAGVHVLLSNIYASAG 681



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/517 (26%), Positives = 230/517 (44%), Gaps = 73/517 (14%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARM---LFDEIPKTNIH 145
           + L   K LH Q+  +GL ++    TKL+    E    +++ +AR    LF E  +++  
Sbjct: 36  KTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDA 95

Query: 146 RWI--ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
            ++  +L   Y+  G  +EA+ ++  M + G+  N +  P VL  C  ++    G ++H 
Sbjct: 96  LFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHG 155

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            V+K     D F+ + LI  Y++CG ++   KVF+ M E+++V+  +++ GY +     E
Sbjct: 156 SVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKE 215

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-------------------QVMVSKLFQ 304
           A++L  E+    ++P+ VT   +IS  +K  D                   +VMV+ L  
Sbjct: 216 AVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVD 275

Query: 305 LMRAKG------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           +    G            V+ ++V + +++S         EA     EML QG  P   T
Sbjct: 276 MYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVT 335

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           + S + A A   ++  GK  HG  I  G+EG   + + ++DMY KCG    A  +FD MS
Sbjct: 336 MLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMS 395

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-------------------------- 446
            +  V+WNS+  G   +G  + A E+FNQ+ ER                           
Sbjct: 396 NKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFRE 455

Query: 447 ------KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
                 K D ++   + +AC ++G  EL + +   + EK  I         +VD+  R G
Sbjct: 456 MQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYI-EKNGIPCDMRLNTALVDMFARCG 514

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
               A ++   M TE D+  W A +G     GN E A
Sbjct: 515 DPQSAMQVFNKM-TERDVSAWTAAIGTMAMEGNGEGA 550



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 111/241 (46%), Gaps = 8/241 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A +  K +H  +  +G+    ++ T L+  +  C +   A  +F+++ + ++  W A  G
Sbjct: 480 APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIG 539

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G  + A  +F++M IQG+K ++ +   VL AC H   +  G  I SL+  H    
Sbjct: 540 TMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISP 599

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAMNAMVSGYVQRG--LATEALNLV 268
                  ++D+  + G + +A  +   M     D+V  + + +  V +   +AT A   +
Sbjct: 600 QIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERI 659

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
            E+   R   +V+  N     ++ +G    V+++   +R KGV     S +  ++G++H 
Sbjct: 660 NELAPQRAGVHVLLSNI----YASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHE 715

Query: 329 F 329
           F
Sbjct: 716 F 716


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 161/498 (32%), Positives = 266/498 (53%), Gaps = 41/498 (8%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S+   L    Y+  +    R  +L+ GK LHAQ+I +       +A+ L+  Y +     
Sbjct: 263 SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFK 322

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            A+ +F+ +   N   W  L   + + G   E+V +F++M  + +  + F + +++  C 
Sbjct: 323 EAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC 382

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
              D+  G ++HSL LK        V +SLI MY+KC +++ A+ +F  M EKDIV    
Sbjct: 383 SRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIV---- 438

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
                                          +W ++I+ +S+ G+     + F  M    
Sbjct: 439 -------------------------------SWTSMITAYSQVGNVAKAREFFDGMS--- 464

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC-PTSATISSILPACASAANMRRG 369
            E +V++W +++   + +   ++    +K MLS+ +  P   T  ++   CA     + G
Sbjct: 465 -EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLG 523

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
            +I G  + +G+  D  V +A++ MY+KCG I EAR +FD ++ ++ V+WN+MI G + H
Sbjct: 524 DQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQH 583

Query: 430 GYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G   +AIE+F+ + +R  K D++S+ AVL+ C H GLV+ G+  F+MM+  + I P  EH
Sbjct: 584 GMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEH 643

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           ++CMVDLLGRAG L EA ++I  M  +P   VWGALL ACK HGN ELAE+AAKH+ EL+
Sbjct: 644 FSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELD 703

Query: 549 PESAANNMLLTDLYANAG 566
              + + ML+  +YA+AG
Sbjct: 704 SPDSGSYMLMAKIYADAG 721



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 207/504 (41%), Gaps = 114/504 (22%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARM-------------------------- 134
           H +L+  GLA    +   L+  Y  C  +  AR                           
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 135 ------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLK 187
                 LF  +P  ++  W  L   Y +   +  ++  F  MH  G    N F +   +K
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           +CG L       ++ ++V K     D+ V ++L+DM+ +CG+V+ A ++F  + E  +  
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            N+M++GYV+      AL L + +     + +VV+WN ++S  S+SG       +   M+
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMP----ERDVVSWNMMVSALSQSGRVREALDMVVDMQ 262

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           +KGV  D                                   S T +S L ACA  +++R
Sbjct: 263 SKGVRLD-----------------------------------STTYTSSLTACARLSSLR 287

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            GK++H   I      D +V SALV++YAK G   EA+ +F+ + +RN V W  +I G  
Sbjct: 288 WGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFL 347

Query: 428 NHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL-------------- 472
            +G   E++ELFNQM  E   LD  +   +++ CC    + LG++L              
Sbjct: 348 QYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV 407

Query: 473 ---------------------FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
                                F  M EK  +      +  M+    + G +A+A E    
Sbjct: 408 VSNSLISMYAKCDNLQSAEAIFRFMNEKDIV-----SWTSMITAYSQVGNVAKAREFFDG 462

Query: 512 MSTEPDLFVWGALLGACKNHGNIE 535
           MS E ++  W A+LGA   HG  E
Sbjct: 463 MS-EKNVITWNAMLGAYIQHGAEE 485



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 159/360 (44%), Gaps = 33/360 (9%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK-VFDEMVEKD 244
           L++CG    +     +H  ++     +  F+ ++L+  Y  CG++  A++ +  ++   +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 70

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           ++  N M++GY + G  ++A+ L   +       +V +WNTL+SG+ +S   ++  + F 
Sbjct: 71  VITHNVMLNGYAKLGRLSDAVELFGRMPA----RDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 305 LMRAKGVEPDVVSWTSVIS-GLVHNFCNDEAFDTFKEML--------SQGFCPTSATISS 355
            M   G      SW +  +       C    + +    L        SQ     +A +  
Sbjct: 127 SMHRSG-----DSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVD 181

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +   C +     R         V   E  +  R++++  Y K   +  A  LFD M ER+
Sbjct: 182 MFVRCGAVDLASR-------LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERD 234

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+WN M+   +  G   EA+++   M+ +  +LD  ++T+ LTAC  +  +  G++L  
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLH- 293

Query: 475 MMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              +  + +P  + Y  + +V+L  ++G   EA  +  ++    ++  W  L+     +G
Sbjct: 294 --AQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNV-AWTVLISGFLQYG 350



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 23/267 (8%)

Query: 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           GL   T +A  +IT Y++C  I  AR +FD +   +I  W A+   Y++ G  ++A+ +F
Sbjct: 534 GLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF 593

Query: 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSK 226
            ++  +G K +     +VL  C H   +  G+    ++ + H+        S ++D+  +
Sbjct: 594 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGR 653

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV----KPNVVT 282
            G + +AK + D+M  K      A V G +         N + E+    V     P+  +
Sbjct: 654 AGHLTEAKDLIDDMPMKP----TAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGS 709

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCNDEA------- 334
           +  +   ++ +G     +++ +LMR KG++ +   SW  V    VH F  D+        
Sbjct: 710 YMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV-DNKVHVFKADDVSHPQVLA 768

Query: 335 ----FDTFKEMLSQ-GFCPTSATISSI 356
                D   E +++ G+  T +T S I
Sbjct: 769 IRKKLDELMEKIARLGYVRTDSTRSEI 795


>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
 gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
          Length = 906

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 268/547 (48%), Gaps = 100/547 (18%)

Query: 65  YKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
           Y +P+  R      AA S R+   +   AL  G  LHAQ  V+G         +++  Y+
Sbjct: 349 YTLPLALR------AAASPRVASAVHAHALHLG--LHAQHDVAG---------QILAAYS 391

Query: 125 ECQNIHHARMLFDEIP--KTNIH----------------------------------RWI 148
                  AR +FD +P  +T  H                                   W 
Sbjct: 392 RLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWT 451

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG--TGEKIHSL-V 205
           AL  A+AR G H + + +F EM   G + N   +   L AC +  D+    G+ IH   V
Sbjct: 452 ALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGV 511

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K       FV +SLI MY K G ++ AKK F +   K                      
Sbjct: 512 VKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAK---------------------- 549

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSG--DQVMVSKLFQLMRAKG-VEPDVVSWTSVI 322
                        N VTWNTLI+ ++ +   D+ +   L Q+ +  G V P+VVSW++VI
Sbjct: 550 -------------NTVTWNTLITSYAAARLCDKAL-DVLAQMEQIGGTVAPNVVSWSAVI 595

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
            G   +   D A + F+ M  Q   P   T++++L AC     +R G+E+HG A  M  E
Sbjct: 596 GGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHA--MKAE 653

Query: 383 GDLH--VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            D H  V + L++MYAKCG +S AR +FD M  R+ ++WNSM+ G   HG CDEA+ LF 
Sbjct: 654 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 713

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
            M     + D ++F AVL+AC H G V  G+RLF+ M   +KI P  EHY CMV LLGRA
Sbjct: 714 DMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRA 773

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G L +A E+++TM   PDL VWGALL +C+ HG+  +AE    ++ + E +S  N+ML+T
Sbjct: 774 GLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLIT 833

Query: 560 DLYANAG 566
           +LYA  G
Sbjct: 834 NLYAMCG 840



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           V W  ++   +     D A   ++ M  +   P      ++  A  +AA+ R    +H  
Sbjct: 313 VPWNRLLRAHLGRSRGDLALALYRRM--RALSPALPNSYTLPLALRAAASPRVASAVHAH 370

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDE 434
           A+ +G+     V   ++  Y++ G  ++AR +FD M   R T  WN++I   ++    D 
Sbjct: 371 ALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDA 430

Query: 435 AIE-LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           A +          + D +++TA+L+A    G      +LF  MQ 
Sbjct: 431 ARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQR 475


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 161/498 (32%), Positives = 266/498 (53%), Gaps = 41/498 (8%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S+   L    Y+  +    R  +L+ GK LHAQ+I +       +A+ L+  Y +     
Sbjct: 283 SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFK 342

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            A+ +F+ +   N   W  L   + + G   E+V +F++M  + +  + F + +++  C 
Sbjct: 343 EAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC 402

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
              D+  G ++HSL LK        V +SLI MY+KC +++ A+ +F  M EKDIV    
Sbjct: 403 SRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIV---- 458

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
                                          +W ++I+ +S+ G+     + F  M    
Sbjct: 459 -------------------------------SWTSMITAYSQVGNVAKAREFFDGMS--- 484

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC-PTSATISSILPACASAANMRRG 369
            E +V++W +++   + +   ++    +K MLS+ +  P   T  ++   CA     + G
Sbjct: 485 -EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLG 543

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
            +I G  + +G+  D  V +A++ MY+KCG I EAR +FD ++ ++ V+WN+MI G + H
Sbjct: 544 DQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQH 603

Query: 430 GYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G   +AIE+F+ + +R  K D++S+ AVL+ C H GLV+ G+  F+MM+  + I P  EH
Sbjct: 604 GMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEH 663

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           ++CMVDLLGRAG L EA ++I  M  +P   VWGALL ACK HGN ELAE+AAKH+ EL+
Sbjct: 664 FSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELD 723

Query: 549 PESAANNMLLTDLYANAG 566
              + + ML+  +YA+AG
Sbjct: 724 SPDSGSYMLMAKIYADAG 741



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 207/504 (41%), Gaps = 114/504 (22%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARM-------------------------- 134
           H +L+  GLA    +   L+  Y  C  +  AR                           
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 135 ------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLK 187
                 LF  +P  ++  W  L   Y +   +  ++  F  MH  G    N F +   +K
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           +CG L       ++ ++V K     D+ V ++L+DM+ +CG+V+ A ++F  + E  +  
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            N+M++GYV+      AL L + +     + +VV+WN ++S  S+SG       +   M+
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMP----ERDVVSWNMMVSALSQSGRVREALDMVVDMQ 282

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           +KGV  D                                   S T +S L ACA  +++R
Sbjct: 283 SKGVRLD-----------------------------------STTYTSSLTACARLSSLR 307

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            GK++H   I      D +V SALV++YAK G   EA+ +F+ + +RN V W  +I G  
Sbjct: 308 WGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFL 367

Query: 428 NHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL-------------- 472
            +G   E++ELFNQM  E   LD  +   +++ CC    + LG++L              
Sbjct: 368 QYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV 427

Query: 473 ---------------------FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
                                F  M EK  +      +  M+    + G +A+A E    
Sbjct: 428 VSNSLISMYAKCDNLQSAEAIFRFMNEKDIV-----SWTSMITAYSQVGNVAKAREFFDG 482

Query: 512 MSTEPDLFVWGALLGACKNHGNIE 535
           MS E ++  W A+LGA   HG  E
Sbjct: 483 MS-EKNVITWNAMLGAYIQHGAEE 505



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 159/360 (44%), Gaps = 33/360 (9%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK-VFDEMVEKD 244
           L++CG    +     +H  ++     +  F+ ++L+  Y  CG++  A++ +  ++   +
Sbjct: 31  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 90

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           ++  N M++GY + G  ++A+ L   +       +V +WNTL+SG+ +S   ++  + F 
Sbjct: 91  VITHNVMLNGYAKLGRLSDAVELFGRMPA----RDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 305 LMRAKGVEPDVVSWTSVIS-GLVHNFCNDEAFDTFKEML--------SQGFCPTSATISS 355
            M   G      SW +  +       C    + +    L        SQ     +A +  
Sbjct: 147 SMHRSG-----DSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVD 201

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +   C +     R         V   E  +  R++++  Y K   +  A  LFD M ER+
Sbjct: 202 MFVRCGAVDLASR-------LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERD 254

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+WN M+   +  G   EA+++   M+ +  +LD  ++T+ LTAC  +  +  G++L  
Sbjct: 255 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLH- 313

Query: 475 MMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              +  + +P  + Y  + +V+L  ++G   EA  +  ++    ++  W  L+     +G
Sbjct: 314 --AQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNV-AWTVLISGFLQYG 370



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 23/267 (8%)

Query: 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           GL   T +A  +IT Y++C  I  AR +FD +   +I  W A+   Y++ G  ++A+ +F
Sbjct: 554 GLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF 613

Query: 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSK 226
            ++  +G K +     +VL  C H   +  G+    ++ + H+        S ++D+  +
Sbjct: 614 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGR 673

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV----KPNVVT 282
            G + +AK + D+M  K      A V G +         N + E+    V     P+  +
Sbjct: 674 AGHLTEAKDLIDDMPMKP----TAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGS 729

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCNDEA------- 334
           +  +   ++ +G     +++ +LMR KG++ +   SW  V    VH F  D+        
Sbjct: 730 YMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV-DNKVHVFKADDVSHPQVLA 788

Query: 335 ----FDTFKEMLSQ-GFCPTSATISSI 356
                D   E +++ G+  T +T S I
Sbjct: 789 IRKKLDELMEKIARLGYVRTDSTRSEI 815


>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 162/499 (32%), Positives = 268/499 (53%), Gaps = 44/499 (8%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
           F  + AA S  ++ +I       G+ +HA ++ +G    T ++ KL+  Y +C  + +AR
Sbjct: 38  FRSTAAALSSALQDHINSNTPFHGQKIHAHIVKTGFIPNTNVSIKLLILYLKCGCLKYAR 97

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
            +FDE+P+  +  +  L G Y + G  Q+++ +   + ++G + + F    +LKA     
Sbjct: 98  QMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGD 157

Query: 194 DI----GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           ++      G  +H  +LK     D  + ++L+D Y K G V  A+KVFD M+EK+++   
Sbjct: 158 NVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICST 217

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
           +M+SGY+ RG   +A    EEI    V+ +VV +N +I G+S                 K
Sbjct: 218 SMISGYMNRGSVEDA----EEIFERTVEKDVVVFNAMIEGYS-----------------K 256

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
            V+                   ++A + + EM   GF P  +T +S++ AC+  A    G
Sbjct: 257 SVQ-----------------TAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIG 299

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
           +++ G  +      ++   SAL+DMY+KCG I +AR  F++M E+N  +W+SMI G   +
Sbjct: 300 QQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKN 359

Query: 430 GYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G  DEA++LF++M++   + ++++F   L+AC H GLV  G+ +F  M+ +Y + P  EH
Sbjct: 360 GRPDEALQLFHKMQDCCIEPNYVTFLGALSACGHAGLVSKGREIFESMEREYSLKPGMEH 419

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           YACMVDLLGRAG L  A+E +  M  +P   VW ALL AC  HGN+E+A +AA  L +L 
Sbjct: 420 YACMVDLLGRAGSLNLAWEFVMGMPEKPSSDVWAALLSACNLHGNVEMASVAANELFKLN 479

Query: 549 PESAANNML-LTDLYANAG 566
            E  +   + L++  A AG
Sbjct: 480 AEGRSGAYVALSNTLAAAG 498


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 265/490 (54%), Gaps = 53/490 (10%)

Query: 123 YTECQNIHHARMLFDE-IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
           +TE QN+     LF+  + KT++  W ++    AR G   EA+  F  M    L      
Sbjct: 22  HTERQNL---TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSS 78

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
            P  +KAC  L DI +G++ H       + +D FV S+LI MYS CG +E A+KVFDE+ 
Sbjct: 79  FPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEI-----------------------GTPRVKP 278
           +++IV+  +M+ GY   G A +A++L +++                          RV  
Sbjct: 139 KRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPA 198

Query: 279 NVVT------------------WNTLISGFSKSGDQ--VMVSKLFQLMRAKGVEPDVVSW 318
             +T                   NTL+  ++K G+    +  K+F  +    V+ D VS+
Sbjct: 199 KGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI----VDKDRVSY 254

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA-TISSILPACASAANMRRGKEIHGCAI 377
            S++S    +  ++EAF+ F+ ++       +A T+S++L A + +  +R GK IH   I
Sbjct: 255 NSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI 314

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
            MG+E D+ V ++++DMY KCG +  AR  FD+M  +N  +W +MI G   HG+  +A+E
Sbjct: 315 RMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALE 374

Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF  M +   + ++++F +VL AC H GL   G R FN M+ ++ + P  EHY CMVDLL
Sbjct: 375 LFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLL 434

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
           GRAG L +AY++I+ M  +PD  +W +LL AC+ H N+ELAEI+   L EL+  +    M
Sbjct: 435 GRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYM 494

Query: 557 LLTDLYANAG 566
           LL+ +YA+AG
Sbjct: 495 LLSHIYADAG 504



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 178/380 (46%), Gaps = 50/380 (13%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           SGK  H Q  V G      +++ LI  Y+ C  +  AR +FDEIPK NI  W ++   Y 
Sbjct: 94  SGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYD 153

Query: 156 RRGYHQEAVTVFHEMHIQGLKQN--IFV----IPSVLKACGHLSDIGTGEKIHSLVLKHS 209
             G   +AV++F ++ +     +  +F+    + SV+ AC  +   G  E IHS V+K  
Sbjct: 154 LNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRG 213

Query: 210 FGTDAFVVSSLIDMYSKC--GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
           F     V ++L+D Y+K   G V  A+K+FD++V+KD V+ N+++S Y Q G++ EA  +
Sbjct: 214 FDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEV 273

Query: 268 VEEIGTPRVKP-NVVTWNTLISGFSKSG---------DQVM------------------- 298
              +   +V   N +T +T++   S SG         DQV+                   
Sbjct: 274 FRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYC 333

Query: 299 -------VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
                    K F  M+ K V     SWT++I+G   +    +A + F  M+  G  P   
Sbjct: 334 KCGRVETARKAFDRMKNKNVR----SWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389

Query: 352 TISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           T  S+L AC+ A     G +  +      GVE  L     +VD+  + GF+ +A  L  +
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449

Query: 411 MSER-NTVTWNSMIFGCANH 429
           M  + +++ W+S++  C  H
Sbjct: 450 MKMKPDSIIWSSLLAACRIH 469



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H Q+I  GL     + T +I  Y +C  +  AR  FD +   N+  W A+  
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIA 361

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G+  +A+ +F  M   G++ N     SVL AC H      G +  +  +K  FG 
Sbjct: 362 GYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFN-AMKGRFGV 420

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
           +  +     ++D+  + G ++KA  +   M
Sbjct: 421 EPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 168/507 (33%), Positives = 256/507 (50%), Gaps = 68/507 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP---------------- 140
           GK +H  ++  G      +  +LI  Y +   +  AR LFD +                 
Sbjct: 61  GKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAF 120

Query: 141 -------------------KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
                              + N+  W +L  +YAR G+H+EA+ +F  M ++G++ +   
Sbjct: 121 NYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEA 180

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           +  V+  C  L      + IH   +K  F   +FV S+LI +Y K G V  A  +F EM 
Sbjct: 181 LAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMK 240

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
            K + + NA+++ + + GL  EAL +  ++                    +SGD      
Sbjct: 241 NKSLASWNALITSHAEAGLCDEALEIFSQL-------------------ERSGD------ 275

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                    + P+VVSW+++I G        EA + F+ M        + TIS++L  CA
Sbjct: 276 ------CPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCA 329

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
             A +  G+EIHG  +   +  ++ V + LV+MYAKCG + E   +F+K   ++ ++WNS
Sbjct: 330 ELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNS 389

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G   HG    A+E F+QM +   K D ++F AVL++C H GLV  G+RLF+ M +KY
Sbjct: 390 MITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKY 449

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           +I P+ EHYACMVDLLGRAG L EA E++K M   P+  VWGALL +C+ H N E+AE  
Sbjct: 450 RIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEET 509

Query: 541 AKHLSELE-PESAANNMLLTDLYANAG 566
           A HL  L   E+    MLL+++YA +G
Sbjct: 510 ASHLFNLSHRETTGTYMLLSNIYAASG 536



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 40/303 (13%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F  P V++AC ++     G+ IH  VL+  F +   V + LI MY+K G +  A+ +FD 
Sbjct: 43  FTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDR 102

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M  +  ++ N MVS Y        AL + + + +  ++PN+VTW +LIS +++SG     
Sbjct: 103 MSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEA 162

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            +LF LMR KGVE         +SG                            ++ ++  
Sbjct: 163 MELFGLMRMKGVE---------VSG--------------------------EALAVVISI 187

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA      R K IH  A+  G E    V+SAL+ +Y K G ++ A  LF +M  ++  +W
Sbjct: 188 CADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASW 247

Query: 420 NSMIFGCANHGYCDEAIELFNQMEE-----RKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
           N++I   A  G CDEA+E+F+Q+E      R + + +S++A++      G  +    LF 
Sbjct: 248 NALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFR 307

Query: 475 MMQ 477
            MQ
Sbjct: 308 RMQ 310



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 13/229 (5%)

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
           L  GF     T   ++ ACA   +   GK IHG  + MG +  LHV + L+ MYAK G +
Sbjct: 39  LGDGF-----TFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRM 93

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC 460
            +AR LFD+MS R+ ++WN+M+   A +  C+ A+E+F +ME E  + + +++T+++++ 
Sbjct: 94  RDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSY 153

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPD 517
              G  E    LF +M+ K  +    E  A ++ +    G    A   +E       E  
Sbjct: 154 ARSGWHEEAMELFGLMRMK-GVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEY 212

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            FV  AL+     HG++     A     E++ +S A+   L   +A AG
Sbjct: 213 SFVKSALICVYGKHGDV---NGAWNLFLEMKNKSLASWNALITSHAEAG 258



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 5/163 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H  ++ + +     +   L+  Y +C  +    M+F++  + ++  W ++  
Sbjct: 333 ALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMIT 392

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-KHSFG 211
            Y   G    A+  F +M   G K +     +VL +C H   +  G ++   +L K+   
Sbjct: 393 GYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIE 452

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
                 + ++D+  + G + +A     E+V+   VA NA V G
Sbjct: 453 PQMEHYACMVDLLGRAGLLREA----SEIVKNMPVAPNACVWG 491


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 163/502 (32%), Positives = 266/502 (52%), Gaps = 47/502 (9%)

Query: 73  SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
            F L+  +++  +     ++ L++G+ +H  +  S  A    I T L+  Y +C+    A
Sbjct: 146 DFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDA 205

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
           R +FD +P+ N+  W +L   Y + G   EA+ +F EM   G   +   + SV+ AC  L
Sbjct: 206 RRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGL 265

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVS-SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           +    G ++H+ ++K     D  V++ +L+DMY+KCG   +A+ +FD M  + +V+  ++
Sbjct: 266 AAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSI 325

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
           ++GY +     +A                               QV+ S++        V
Sbjct: 326 LAGYAKSANVEDA-------------------------------QVVFSQM--------V 346

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           E +V++W  +I+    N   +EA   F ++      PT  T  ++L AC + A ++ G++
Sbjct: 347 EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQ 406

Query: 372 IH------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
            H      G     G E D+ V ++LVDMY K G I +   +F++M+ R+ V+WN+MI G
Sbjct: 407 AHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVG 466

Query: 426 CANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A +G   +A+ LF +M    +  D ++   VL+AC H GLV+ G+R F+ M E + I P
Sbjct: 467 YAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITP 526

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             +HY CMVDLLGRAG L EA E+IK M TEPD  +W +LLGAC+ H N+EL E  A  L
Sbjct: 527 SRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRL 586

Query: 545 SELEPESAANNMLLTDLYANAG 566
            EL+PE++   +LL+++YA  G
Sbjct: 587 FELDPENSGPYVLLSNMYAEMG 608



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 165/346 (47%), Gaps = 39/346 (11%)

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H  VLK     + F++++L+  Y++ G + +A++VFD +  ++  + NA++S Y + G  
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
            EA  L E I      P+  ++N +++  ++ G              +G   D + + + 
Sbjct: 100 DEARALFEAI----PDPDQCSYNAVVAALARHG--------------RGHAGDALRFLAA 141

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
                              M +  F   + + +S L ACA+  ++R G+++HG       
Sbjct: 142 -------------------MHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPH 182

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             D+H+ +ALVDMYAKC    +AR +FD M ERN V+WNS+I     +G   EA+ LF +
Sbjct: 183 ADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVE 242

Query: 442 MEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M       D ++ ++V++AC  +     G+++   M ++ ++         +VD+  + G
Sbjct: 243 MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 302

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           R  EA  +  +M +   +     L G  K+  N+E A++    + E
Sbjct: 303 RTWEARCIFDSMPSRSVVSETSILAGYAKS-ANVEDAQVVFSQMVE 347



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           SA ++   +  HGC +   V G+  + + LV  YA+ G + EAR +FD +  RNT ++N+
Sbjct: 29  SAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNA 88

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           ++   A  G  DEA  LF  + +    D  S+ AV+ A    G    G  L
Sbjct: 89  LLSAYARLGRPDEARALFEAIPDP---DQCSYNAVVAALARHGRGHAGDAL 136


>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
          Length = 569

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 268/547 (48%), Gaps = 100/547 (18%)

Query: 65  YKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
           Y +P+  R      AA S R+   +   AL  G  LHAQ  V+G         +++  Y+
Sbjct: 12  YTLPLALR------AAASPRVASAVHAHALHLG--LHAQHDVAG---------QILAAYS 54

Query: 125 ECQNIHHARMLFDEIP--KTNIH----------------------------------RWI 148
                  AR +FD +P  +T  H                                   W 
Sbjct: 55  RLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWT 114

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG--TGEKIHSL-V 205
           AL  A+AR G H + + +F EM   G + N   +   L AC +  D+    G+ IH   V
Sbjct: 115 ALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGV 174

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K       FV +SLI MY K G ++ AKK F +   K                      
Sbjct: 175 VKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAK---------------------- 212

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSG--DQVMVSKLFQLMRAKG-VEPDVVSWTSVI 322
                        N VTWNTLI+ ++ +   D+ +   L Q+ +  G V P+VVSW++VI
Sbjct: 213 -------------NTVTWNTLITSYAAARLCDKAL-DVLAQMEQIGGTVAPNVVSWSAVI 258

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
            G   +   D A + F+ M  Q   P   T++++L AC     +R G+E+HG A  M  E
Sbjct: 259 GGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHA--MKAE 316

Query: 383 GDLH--VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            D H  V + L++MYAKCG +S AR +FD M  R+ ++WNSM+ G   HG CDEA+ LF 
Sbjct: 317 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 376

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
            M     + D ++F AVL+AC H G V  G+RLF+ M   +KI P  EHY CMV LLGRA
Sbjct: 377 DMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRA 436

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G L +A E+++TM   PDL VWGALL +C+ HG+  +AE    ++ + E +S  N+ML+T
Sbjct: 437 GLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLIT 496

Query: 560 DLYANAG 566
           +LYA  G
Sbjct: 497 NLYAMCG 503



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P S T+   L A AS    R    +H  A+ +G+     V   ++  Y++ G  ++AR +
Sbjct: 9   PNSYTLPLALRAAASP---RVASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRV 65

Query: 408 FDKMSE-RNTVTWNSMIFGCANHGYCDEAIE-LFNQMEERKKLDHLSFTAVLTACCHVGL 465
           FD M   R T  WN++I   ++    D A +          + D +++TA+L+A    G 
Sbjct: 66  FDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGK 125

Query: 466 VELGQRLFNMMQE 478
                +LF  MQ 
Sbjct: 126 HADVLQLFGEMQR 138


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 275/547 (50%), Gaps = 83/547 (15%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G  +H  ++  GL     ++  LI FY EC  +   R LFD + + N+  W +L  
Sbjct: 145 ALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLIN 204

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y+ R   +EAV++F +M   G++ N   +  V+ AC  L D+  G+K+ S + +     
Sbjct: 205 GYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMEL 264

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKV-------------------------------FDEMV 241
              +V++L+DMY KCG +  A+++                                DEM+
Sbjct: 265 STIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEML 324

Query: 242 EK----DIVAM-----------------------------------NAMVSGYVQRGLAT 262
           +K    D V M                                   NA++  Y++ G   
Sbjct: 325 QKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKRE 384

Query: 263 EALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
            A  + E +      PN  VVTWN+LI+G  + GD  +  ++F  M    +E D+VSW +
Sbjct: 385 AACKVFEHM------PNKTVVTWNSLIAGLVRDGDMELAWRIFDEM----LERDLVSWNT 434

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +I  LV     +EA + F+EM +QG      T+  I  AC     +   K +        
Sbjct: 435 MIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKND 494

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           +  DL + +ALVDM+++CG  S A  +F +M +R+   W + I   A  G  + AIELFN
Sbjct: 495 IHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFN 554

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M E+K K D + F A+LTAC H G V+ G++LF  M++ + I P   HY CMVDLLGRA
Sbjct: 555 EMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRA 614

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G L EA ++I++M  EP+  VWG+LL AC+ H N+ELA  AA+ L++L PE    ++LL+
Sbjct: 615 GLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLS 674

Query: 560 DLYANAG 566
           ++YA+AG
Sbjct: 675 NIYASAG 681



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/556 (25%), Positives = 255/556 (45%), Gaps = 76/556 (13%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGL------ARLTQIATKLITFYTECQNIH 130
           +P   +   ++ +  + L+  K LH  ++  GL      + L ++    +   T  +++ 
Sbjct: 21  NPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGT-LESLD 79

Query: 131 HARMLF--DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +AR  F  D+    ++  +  L   YA  G   +A+ ++ +M + G+  + +  P +L A
Sbjct: 80  YARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSA 139

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  +  +  G ++H  VLK     D FV +SLI  Y++CG V+  +K+FD M+E+++V+ 
Sbjct: 140 CSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSW 199

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD------------- 295
            ++++GY  R L+ EA++L  ++G   V+PN VT   +IS  +K  D             
Sbjct: 200 TSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISE 259

Query: 296 ------QVMVSKLFQLMRAKG------------VEPDVVSWTSVISGLVHNFCNDEAFDT 337
                  +MV+ L  +    G               ++V + +++S  VH+    +    
Sbjct: 260 LGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVI 319

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
             EML +G  P   T+ S + ACA   ++  GK  H   +  G+EG  ++ +A++DMY K
Sbjct: 320 LDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMK 379

Query: 398 CGF-------------------------------ISEARTLFDKMSERNTVTWNSMIFGC 426
           CG                                +  A  +FD+M ER+ V+WN+MI   
Sbjct: 380 CGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGAL 439

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
                 +EAIELF +M+ +    D ++   + +AC ++G ++L + +   + EK  I   
Sbjct: 440 VQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYI-EKNDIHVD 498

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA-EIAAKHL 544
            +    +VD+  R G  + A  + K M    D+  W A +G     GN E A E+  + L
Sbjct: 499 LQLGTALVDMFSRCGDPSSAMHVFKRMEKR-DVSAWTAAIGVMAMEGNTEGAIELFNEML 557

Query: 545 SE-LEPESAANNMLLT 559
            + ++P+      LLT
Sbjct: 558 EQKVKPDDVVFVALLT 573



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           Q+ T L+  ++ C +   A  +F  + K ++  W A  G  A  G  + A+ +F+EM  Q
Sbjct: 500 QLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQ 559

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            +K +  V  ++L AC H   +  G ++  S+   H           ++D+  + G +E+
Sbjct: 560 KVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEE 619

Query: 233 AKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288
           A  +   M +E + V   ++++    +    LA  A   + ++   RV  +V+  N    
Sbjct: 620 AVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNI--- 676

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            ++ +G    V+++   M+ KGV+    S +  + GL+H F
Sbjct: 677 -YASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEF 716


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 296/578 (51%), Gaps = 79/578 (13%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRD----------RALQSGKILHAQLIVSGLARLTQIA 116
           +P  S  FH  P++ S+     IR+          + LQS +I+HAQ+I  GL       
Sbjct: 10  VPSSSYPFHFLPSS-SDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYAL 68

Query: 117 TKLITF---YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           +KLI F       + + +A  +F  I + N+  W  +   +A       A+ ++  M   
Sbjct: 69  SKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISL 128

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS---- 229
           GL  N +  P VLK+C        G++IH  VLK     D +V +SLI MY + G     
Sbjct: 129 GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDA 188

Query: 230 ---------------------------VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
                                      +E A+K+FDE+  KD+V+ NAM+SGY + G   
Sbjct: 189 HKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-----QV-------------------- 297
           EAL L +++    V+P+  T  T++S  ++SG      QV                    
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308

Query: 298 -MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
            + SK  +L  A G+       DV+SW ++I G  H     EA   F+EML  G  P   
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368

Query: 352 TISSILPACASAANMRRGKEIHGC--AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           T+ SILPACA    +  G+ IH      + GV     +R++L+DMYAKCG I  A  +F+
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVEL 468
            +  ++  +WN+MIFG A HG  D + +LF++M +   + D ++F  +L+AC H G+++L
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G+ +F  M + YK+ P+ EHY CM+DLLG +G   EA EMI  M  EPD  +W +LL AC
Sbjct: 489 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC 548

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           K HGN+EL E  A++L ++EPE+  + +LL+++YA+AG
Sbjct: 549 KMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAG 586


>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 659

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 161/481 (33%), Positives = 257/481 (53%), Gaps = 16/481 (3%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ LHA    + L     + T L+  Y     I     +F E+   N   W A+      
Sbjct: 106 GESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTVTWTAIVSGMVE 165

Query: 157 RGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
            G H+E +T F EM   +GL  + F   + LKAC  L  +  G++IH+ V+         
Sbjct: 166 AGRHKEGLTYFSEMSRSKGLSDD-FAFATALKACARLRQVKYGKEIHTHVIVRGSDASLC 224

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           VV+SLI+MY++CG +     +F+ M E+D+ +   ++  Y Q G   +A+    +I   R
Sbjct: 225 VVNSLINMYTECGEMHDGVHLFESMSERDVFSWTTLIDAYSQMGQEEKAVATFLKIEIFR 284

Query: 276 ---------VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                    +  ++   N+++  +S  G     S LFQ MR +    D+++W+++I G  
Sbjct: 285 RTSQWTYFCLGDSLSVSNSMMKMYSTCGKLDSASVLFQGMRRR----DIITWSTIIGGYS 340

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
                +E F  F  M   G  PT   ++S+L    + A + +G+++H  A+ +G+E +  
Sbjct: 341 QAGLGEEVFMCFSWMRQAGPKPTDPALASLLSVSGTMAVLEQGRQVHALALYLGLEQNST 400

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEER 445
           +RSAL++MY+KCG I EA  +F++    + V+  +MI G A HG   EAI+LF + ++  
Sbjct: 401 IRSALINMYSKCGSIEEASKIFEETDTDDIVSLTAMINGYAEHGNTKEAIDLFEKSLKVG 460

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + D ++F +VLTAC H G ++LG R FN+MQ++Y I P  EHY CMVDLL RAGRL++A
Sbjct: 461 LRPDTVTFISVLTACSHSGQLDLGFRYFNLMQDEYNIRPVKEHYGCMVDLLCRAGRLSDA 520

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            +MI  M  + D  VW  LL ACK  G+ E    AA+ + EL+P S    + L ++Y++ 
Sbjct: 521 EKMINEMPWKKDDVVWTTLLNACKAKGDTERGRRAAERILELDPTSETAFVTLANIYSST 580

Query: 566 G 566
           G
Sbjct: 581 G 581



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 195/448 (43%), Gaps = 71/448 (15%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVL 186
           N   AR LFD++P  +I  W A+   Y       EA+ +F  +     +  +  V+   L
Sbjct: 35  NQGAARHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVAL 94

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
           KACG  S+IG GE +H+   K S  T  FV ++L++MY + G ++K  ++F EM  ++ V
Sbjct: 95  KACGQSSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTV 154

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPR--------------------VK--------- 277
              A+VSG V+ G   E L    E+   +                    VK         
Sbjct: 155 TWTAIVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQVKYGKEIHTHV 214

Query: 278 ------PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                  ++   N+LI+ +++ G+      LF+ M     E DV SWT++I         
Sbjct: 215 IVRGSDASLCVVNSLINMYTECGEMHDGVHLFESMS----ERDVFSWTTLIDAYSQMGQE 270

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD-LHVRSA 390
           ++A  TF ++  + F  TS      L                         GD L V ++
Sbjct: 271 EKAVATFLKI--EIFRRTSQWTYFCL-------------------------GDSLSVSNS 303

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLD 449
           ++ MY+ CG +  A  LF  M  R+ +TW+++I G +  G  +E    F+ M +   K  
Sbjct: 304 MMKMYSTCGKLDSASVLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAGPKPT 363

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
             +  ++L+    + ++E G+++ + +     +   +   + ++++  + G + EA ++ 
Sbjct: 364 DPALASLLSVSGTMAVLEQGRQV-HALALYLGLEQNSTIRSALINMYSKCGSIEEASKIF 422

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELA 537
           +   T+ D+    A++     HGN + A
Sbjct: 423 EETDTD-DIVSLTAMINGYAEHGNTKEA 449



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 155/315 (49%), Gaps = 14/315 (4%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           ++  ++  Y+ C  +  A +LF  + + +I  W  + G Y++ G  +E    F  M   G
Sbjct: 300 VSNSMMKMYSTCGKLDSASVLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAG 359

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
            K     + S+L   G ++ +  G ++H+L L      ++ + S+LI+MYSKCGS+E+A 
Sbjct: 360 PKPTDPALASLLSVSGTMAVLEQGRQVHALALYLGLEQNSTIRSALINMYSKCGSIEEAS 419

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           K+F+E    DIV++ AM++GY + G   EA++L E+     ++P+ VT+ ++++  S SG
Sbjct: 420 KIFEETDTDDIVSLTAMINGYAEHGNTKEAIDLFEKSLKVGLRPDTVTFISVLTACSHSG 479

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATI 353
              +  + F LM+    E ++         +V   C        ++M+++  +       
Sbjct: 480 QLDLGFRYFNLMQD---EYNIRPVKEHYGCMVDLLCRAGRLSDAEKMINEMPWKKDDVVW 536

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV---DMYAKCGFISEARTLFDK 410
           +++L AC +  +  RG+     A    +E D    +A V   ++Y+  G + EA  +   
Sbjct: 537 TTLLNACKAKGDTERGRR----AAERILELDPTSETAFVTLANIYSSTGKLEEAAHVRKA 592

Query: 411 MSERNTVT---WNSM 422
           M  +  +    W+S+
Sbjct: 593 MKSKGVIKVPGWSSI 607



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 179/442 (40%), Gaps = 101/442 (22%)

Query: 70  ISRSFHLSPA-AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           +SRS  LS   A++  ++   R R ++ GK +H  +IV G      +   LI  YTEC  
Sbjct: 179 MSRSKGLSDDFAFATALKACARLRQVKYGKEIHTHVIVRGSDASLCVVNSLINMYTECGE 238

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +H    LF+ + + ++  W  L  AY++ G  ++AV  F       LK  IF        
Sbjct: 239 MHDGVHLFESMSERDVFSWTTLIDAYSQMGQEEKAVATF-------LKIEIF-------- 283

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
                      +  S       G    V +S++ MYS CG ++ A  +F  M  +DI+  
Sbjct: 284 -----------RRTSQWTYFCLGDSLSVSNSMMKMYSTCGKLDSASVLFQGMRRRDIITW 332

Query: 249 NAMVSGYVQRGLATEA---LNLVEEIGTPRVKP--------------------------- 278
           + ++ GY Q GL  E     + + + G     P                           
Sbjct: 333 STIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLSVSGTMAVLEQGRQVHALALY 392

Query: 279 -----NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                N    + LI+ +SK G     SK+F+    +    D+VS T++I+G   +    E
Sbjct: 393 LGLEQNSTIRSALINMYSKCGSIEEASKIFE----ETDTDDIVSLTAMINGYAEHGNTKE 448

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAA----------------NMRRGKEIHGCAI 377
           A D F++ L  G  P + T  S+L AC+ +                 N+R  KE +GC  
Sbjct: 449 AIDLFEKSLKVGLRPDTVTFISVLTACSHSGQLDLGFRYFNLMQDEYNIRPVKEHYGC-- 506

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAI 436
                        +VD+  + G +S+A  + ++M  +++ V W +++  C   G  +   
Sbjct: 507 -------------MVDLLCRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERGR 553

Query: 437 ELFNQMEERKKLDHLSFTAVLT 458
               ++ E   LD  S TA +T
Sbjct: 554 RAAERILE---LDPTSETAFVT 572



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 20/238 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +HA  +  GL + + I + LI  Y++C +I  A  +F+E    +I    A+   
Sbjct: 380 LEQGRQVHALALYLGLEQNSTIRSALINMYSKCGSIEEASKIFEETDTDDIVSLTAMING 439

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV-------- 205
           YA  G  +EA+ +F +    GL+ +     SVL AC H   +  G +  +L+        
Sbjct: 440 YAEHGNTKEAIDLFEKSLKVGLRPDTVTFISVLTACSHSGQLDLGFRYFNLMQDEYNIRP 499

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATEA 264
           +K  +G        ++D+  + G +  A+K+ +EM  +KD V    +++    +G     
Sbjct: 500 VKEHYGC-------MVDLLCRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERG 552

Query: 265 LNLVEEIGTPRVKPNVVT-WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
               E I    + P   T + TL + +S +G     + + + M++KGV   V  W+S+
Sbjct: 553 RRAAERI--LELDPTSETAFVTLANIYSSTGKLEEAAHVRKAMKSKGV-IKVPGWSSI 607


>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
 gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
 gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
 gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/482 (34%), Positives = 270/482 (56%), Gaps = 13/482 (2%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYT---ECQNIHHARMLFDEIPKTNIHR 146
           R ++L   +  HA ++ +GL   T  A+KL+ F     E + + +A  + + I   N   
Sbjct: 48  RAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFT 107

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
             ++  AYA     + A+TVF EM +  +  + +    VLKAC        G +IH L +
Sbjct: 108 HNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFI 167

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K    TD FV ++L+++Y + G  E A+KV D M  +D V+ N+++S Y+++GL  EA  
Sbjct: 168 KSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARA 227

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           L +E+     + NV +WN +ISG++ +G      ++F  M  +    DVVSW ++++   
Sbjct: 228 LFDEME----ERNVESWNFMISGYAAAGLVKEAKEVFDSMPVR----DVVSWNAMVTAYA 279

Query: 327 HNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           H  C +E  + F +ML      P   T+ S+L ACAS  ++ +G+ +H      G+E + 
Sbjct: 280 HVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEG 339

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EE 444
            + +ALVDMY+KCG I +A  +F   S+R+  TWNS+I   + HG   +A+E+F++M  E
Sbjct: 340 FLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYE 399

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             K + ++F  VL+AC HVG+++  ++LF MM   Y++ P  EHY CMVDLLGR G++ E
Sbjct: 400 GFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEE 459

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           A E++  +  +    +  +LLGACK  G +E AE  A  L EL    ++    +++LYA+
Sbjct: 460 AEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYAS 519

Query: 565 AG 566
            G
Sbjct: 520 DG 521


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 180/570 (31%), Positives = 283/570 (49%), Gaps = 90/570 (15%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L   A+   I+     R L+  K LHA++++S L     +A+KLITFY++  +++ A  +
Sbjct: 32  LDYGAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKV 91

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ--------------GLKQNIFV 181
           FD+I   NI  W A+   Y+            H MH+                LK + F 
Sbjct: 92  FDKILDKNIFSWNAMLIGYS-----------IHNMHVHTLNLLSSLLPSYSLTLKPDNFT 140

Query: 182 IPSVLKACGHL-SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           I  VLKA   L  D    +++   VL+H F +D FVV++LI  YS+C     A+ +FD M
Sbjct: 141 ITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRM 200

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEE-IGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
            ++DIV+ N+M++GY Q G   +   L  + + +  ++PN VT  +++   +++ D V  
Sbjct: 201 HDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFG 260

Query: 300 SKLFQLMRAKGVEPDV-------------------------------VSWTSVISG---- 324
            K+ Q +  + VE DV                               V++ S++SG    
Sbjct: 261 MKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTH 320

Query: 325 ---------------------------LVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
                                      LV N CN+   +  +EM   GF P + T+SSIL
Sbjct: 321 GFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSIL 380

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P  +  +N++ GK IH  AI  G   +++V ++++D YAK GF+  A+ +FD+  +R+ +
Sbjct: 381 PTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLI 440

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            W ++I   + HG  + A+ LF  M     + D ++FTAVL AC H G+V    ++F+ M
Sbjct: 441 VWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEM 500

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             KY   P  EHYACMV +L RAG L+EA E I  M  EP+  VWGALL      G++EL
Sbjct: 501 FLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVEL 560

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +    HL  +EPE+  N +++ +LY+ AG
Sbjct: 561 GKFVCDHLFNMEPENTGNYVIMANLYSQAG 590



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 162/348 (46%), Gaps = 13/348 (3%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQ 127
           II R   +  +A++  I +Y +      G + +A+ + + ++   ++    +++ Y    
Sbjct: 267 IIERKVEMDVSAHNSLIGLYAK-----CGSLDYARELFNEMSNKDEVTYGSIVSGYMTHG 321

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
            +  A  LF E+    +  W A+     +   ++  + +  EM   G + N   + S+L 
Sbjct: 322 FVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILP 381

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
                S++  G+ IH+  +++ +  + +V +S+ID Y+K G +  A+ VFD+  ++ ++ 
Sbjct: 382 TFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIV 441

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
             A++S Y   G A  AL L  ++ +   +P+ VT+  +++  + SG      K+F  M 
Sbjct: 442 WTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMF 501

Query: 308 AK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
            K G +P V  +  ++  L       EA +   +M  +   P +    ++L   + + ++
Sbjct: 502 LKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIE---PNAKVWGALLNGVSVSGDV 558

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALV-DMYAKCGFISEARTLFDKMSE 413
             GK +  C  +  +E +      ++ ++Y++ G   EA  + +KM +
Sbjct: 559 ELGKFV--CDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKK 604


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 254/477 (53%), Gaps = 40/477 (8%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           + RD AL+ G+ LH  ++  GL     + T L+  Y  C  +  AR +FD  PK ++  W
Sbjct: 149 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 208

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             +  AY + G  +E+  +F  M  + +      +  VL AC  L D+ TG+K+HS V  
Sbjct: 209 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 268

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
               ++  + +++IDMY+ CG ++ A  +F  M  +DI                      
Sbjct: 269 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI---------------------- 306

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                        ++W T++SGF+  G+  +    F  M     E D VSWT++I G + 
Sbjct: 307 -------------ISWTTIVSGFTNLGEIDVARNYFDKM----PEKDYVSWTAMIDGYIR 349

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           +    EA + F+ M +    P   T+ S+L ACA    +  G+ I        ++ DL V
Sbjct: 350 SNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFV 409

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
           R+AL+DMY KCG + +A ++F +MS+R+  TW +MI G A +G+ ++A+++F+ M +   
Sbjct: 410 RNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASI 469

Query: 448 L-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           L D +++  VL+AC H GLV+ G++ F  M  ++ I P   HY C+VDLL RAGRL EAY
Sbjct: 470 LPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAY 529

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           E+I+ M  + +  VWGALL  C+ +   ++AE+  K + ELEP++ A  +LL ++YA
Sbjct: 530 EVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYA 586



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 105/242 (43%), Gaps = 9/242 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ +   +  + +     +   LI  Y +C ++  A  +F E+ + +   W A+  
Sbjct: 387 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 446

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFG 211
             A  G+ ++A+ +F  M    +  +      VL AC H   +  G K    +  +H   
Sbjct: 447 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 506

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
            +      L+D+ ++ G +++A +V + M ++ + +   A+++G   Y +  +A   +  
Sbjct: 507 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 566

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
           + E+       N   +  L + ++       + +L Q+M  KG++         ++G VH
Sbjct: 567 ILELEP----DNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVH 622

Query: 328 NF 329
            F
Sbjct: 623 EF 624


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/562 (31%), Positives = 291/562 (51%), Gaps = 73/562 (12%)

Query: 10  IRDK--PFQFTLSMNDFYSIRRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKM 67
           ++DK  P QFTL                  T ++ SC+ + S        GI  + H   
Sbjct: 99  VKDKVLPTQFTL------------------TNVLASCAATGS-------RGIGKKVHS-- 131

Query: 68  PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
            ++    H      +  + +Y +   L+  K++  ++ +    R T     +I+ +  C 
Sbjct: 132 FVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKL----RNTSSWNAMISLHMNCG 187

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE-MHIQGLKQNIFVIPSVL 186
            +  A   F+ + + +I  W ++     + G+  EA+  F   +    LK + F + S L
Sbjct: 188 RVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASAL 247

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
            AC +L  +  G++IH  +++  F     V ++LI MY+K G VE A++           
Sbjct: 248 SACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARR----------- 296

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
                               ++E+ G   +  +V+ +  L++G+ K GD     ++F  +
Sbjct: 297 --------------------IIEQSGISDL--DVIAFTALLNGYVKLGDITPARQIFNSL 334

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
           +    +PDVV+WT++I G V N  N++A + FK M+S+G  P S T++++L A +S  ++
Sbjct: 335 K----DPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSL 390

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFG 425
             GK+IH  AI  G      V +AL  MYAK G I+ AR +F+ + + R+TV+W SMI  
Sbjct: 391 NHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMA 450

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HG  +EAIELF QM     K DH+++  VL+AC H GLVE G+  F++M+  +KI P
Sbjct: 451 LAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDP 510

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
              HYACMVDL GRAG L EAY+ ++ M  EPD+  WG+LL +CK + N++LA++AA+ L
Sbjct: 511 TLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERL 570

Query: 545 SELEPESAANNMLLTDLYANAG 566
             +EP ++     L ++Y++ G
Sbjct: 571 LLIEPNNSGAYSALANVYSSCG 592



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 227/498 (45%), Gaps = 68/498 (13%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +++ Y +   +  A  +FD IP  +   W  +   Y + G  ++A+ +F +M    +   
Sbjct: 47  ILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPT 106

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F + +VL +C      G G+K+HS V+K        V +SL++MY+K G ++ AK VFD
Sbjct: 107 QFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFD 166

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG-DQV 297
            M  ++  + NAM+S ++  G    AL   E +     + ++V+WN++I+G ++ G D  
Sbjct: 167 RMKLRNTSSWNAMISLHMNCGRVDLALAQFELLS----ERDIVSWNSMIAGCNQHGFDNE 222

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE----MLSQGFCPTSATI 353
            +     +++   ++PD  S  S +S       N E     K+    ++   F  + A  
Sbjct: 223 ALQFFSSILKDTSLKPDRFSLASALSAC----ANLEKLSFGKQIHGYIVRTMFDASGAVG 278

Query: 354 SSILPACASAANM---RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           ++++   A +  +   RR  E  G +     + D+   +AL++ Y K G I+ AR +F+ 
Sbjct: 279 NALISMYAKSGGVEIARRIIEQSGIS-----DLDVIAFTALLNGYVKLGDITPARQIFNS 333

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHV------ 463
           + + + V W +MI G   +G  ++AIE+F  M  E  + +  +  A+L+A   V      
Sbjct: 334 LKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHG 393

Query: 464 -----------------------------GLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
                                        G +   +++FN++++       T  +  M+ 
Sbjct: 394 KQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRD----TVSWTSMIM 449

Query: 495 LLGRAGRLAEAYEMIKTMST---EPDLFVWGALLGACKNHGNIELAEI---AAKHLSELE 548
            L + G   EA E+ + M T   +PD   +  +L AC + G +E         K++ +++
Sbjct: 450 ALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKID 509

Query: 549 PESAANNMLLTDLYANAG 566
           P + ++   + DL+  AG
Sbjct: 510 P-TLSHYACMVDLFGRAG 526



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 130/258 (50%), Gaps = 41/258 (15%)

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
           MN +++ Y + G   +A +L  E+          +WNT++SG++K G      ++F L+ 
Sbjct: 13  MNNLMNLYAKTGFHLDAHDLFNEMPVK----TTFSWNTILSGYAKQGKLEKAHQVFDLIP 68

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            +    D VSWT++I G       ++A   F +M+     PT  T++++L +CA+  +  
Sbjct: 69  VR----DSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRG 124

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM---------------- 411
            GK++H   + +G+   + V ++L++MYAK G +  A+ +FD+M                
Sbjct: 125 IGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184

Query: 412 ---------------SERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFT 454
                          SER+ V+WNSMI GC  HG+ +EA++ F+ +  +   K D  S  
Sbjct: 185 NCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLA 244

Query: 455 AVLTACCHVGLVELGQRL 472
           + L+AC ++  +  G+++
Sbjct: 245 SALSACANLEKLSFGKQI 262



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 129/283 (45%), Gaps = 30/283 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALT 151
           +L  GK +HA  I SG A    +   L T Y +  +I+ AR +F+ + +  +   W ++ 
Sbjct: 389 SLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMI 448

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSF 210
            A A+ G  +EA+ +F +M   G+K +      VL AC H   +  G     L+   H  
Sbjct: 449 MALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKI 508

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGL---ATE 263
                  + ++D++ + G +++A K  + M +E D++A  +++S    Y    L   A E
Sbjct: 509 DPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAE 568

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVI 322
            L L+E         N   ++ L + +S  G     +K+ +LM+A+GV+ +  +SW   I
Sbjct: 569 RLLLIEP-------NNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQ-I 620

Query: 323 SGLVHNFC--------NDEAF----DTFKEMLSQGFCPTSATI 353
               H F          DE +      +KE+   GF P + ++
Sbjct: 621 QNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESV 663



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           + +G+   +++ + L+++YAK GF  +A  LF++M  + T +WN+++ G A  G  ++A 
Sbjct: 2   VKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAH 61

Query: 437 ELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
           ++F+ +  R   D +S+T ++     +G  E   ++F  M  K K++P
Sbjct: 62  QVFDLIPVR---DSVSWTTIIVGYNQMGRFEDAIKIFVDMV-KDKVLP 105


>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
          Length = 784

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 157/476 (32%), Positives = 263/476 (55%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T ++ FY     I +A M+FD + +     W  L  
Sbjct: 266 GIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLIS 325

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  +EA+ +   M  + LK +   + +++ A     ++  G++I    ++H   +
Sbjct: 326 GYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLES 385

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+KCGS+  AKKVFD  V+KD++  N ++S Y   GL+ EAL L  E+ 
Sbjct: 386 DIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQ 445

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G      ++F  M++ G+ P+++SWT++++GLV N C++
Sbjct: 446 LESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSE 505

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M   G  P + TI+  L ACA+ A++  G+ IHG  I          + ++L
Sbjct: 506 EAILFLRKMQESGLRPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSAWIETSL 565

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG I++A  +F          +N+MI   A +G   EAI L+  +E+   K D+
Sbjct: 566 VDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDN 625

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++ T++L+AC +   V     +F+ M  K+ + P  EHY  MVDLL  AG   +A  +++
Sbjct: 626 ITITSLLSACNYGRDVNQAIEVFSDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLME 685

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  +  +L  +C      EL E  +KHL E EP+++ N +++++ YA  G
Sbjct: 686 EMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPDNSGNYVMISNAYAVEG 741



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 156/534 (29%), Positives = 256/534 (47%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +G+ +HAQ++  G   AR   I TKL+ FY +C  +
Sbjct: 41  RNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDAL 100

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A++LF ++   N+  W A+ G   R G  + A+  F EM   G+  + FV+P+V KAC
Sbjct: 101 EIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKAC 160

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V K       FV SSL DMY KCG ++ A+KVFD + +++ VA N
Sbjct: 161 GALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWN 220

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L+ E+    ++P  VT +T +S  +  G               
Sbjct: 221 ALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAXXIVN 280

Query: 295 ----DQVMVSKLFQLMRAKG------------VEPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + +       G            +E   V+W  +ISG V     +EA    
Sbjct: 281 GLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMC 340

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++ A  S  N++ GKEI    I  G+E D+ + S  VDMYAKC
Sbjct: 341 QLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKC 400

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I  A+ +FD   +++ + WN+++   A+ G   EA+ LF +M+ E    + +++  ++
Sbjct: 401 GSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLII 460

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V   + +F  MQ    I P    +  M++ L + G   EA   ++ M     
Sbjct: 461 LSLLRNGQVNEAKEMFLQMQSS-GIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGL 519

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
            P+ F     L AC N  ++        ++  ++    SA     L D+YA  G
Sbjct: 520 RPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSAWIETSLVDMYAKCG 573



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/472 (22%), Positives = 224/472 (47%), Gaps = 16/472 (3%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  +  +GL     +A+ L   Y +C  +  AR +FD IP  N   W AL   Y +
Sbjct: 169 GRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQ 228

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  EM  +G++     + + L A  ++  I  G++ H+  + +    D  +
Sbjct: 229 NGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNIL 288

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S+++ Y   G +E A+ +FD M+EK  V  N ++SGYVQ+GL  EA+++ + +    +
Sbjct: 289 GTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENL 348

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           K + VT +TL+S  + + +  +  ++       G+E D+V  ++ +           A  
Sbjct: 349 KFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKK 408

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F   + +     +  +S+   +  S   +R   E+     +  V  ++   + ++    
Sbjct: 409 VFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQ----LESVPPNVITWNLIILSLL 464

Query: 397 KCGFISEARTLFDKMSER----NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           + G ++EA+ +F +M       N ++W +M+ G   +G  +EAI    +M+E   + +  
Sbjct: 465 RNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAF 524

Query: 452 SFTAVLTACCHVGLVELGQRL--FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           + T  L+AC ++  +  G+ +  + +  ++Y      E    +VD+  + G + +A E +
Sbjct: 525 TITVALSACANLASLHFGRSIHGYIIRNQQYSFSAWIE--TSLVDMYAKCGDINKA-ERV 581

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLT 559
                  +L ++ A++ A   +G +  A    + L +  ++P++     LL+
Sbjct: 582 FGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLS 633



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 208/444 (46%), Gaps = 47/444 (10%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G  +EA+++  EM  + ++    +   +L+ C +  D+ TG++IH+ +LK    +  +
Sbjct: 24  KNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARN 83

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVE 269
            ++ + L+  Y+KC ++E A+ +F ++  +++ +  A++    + GL   AL     ++E
Sbjct: 84  EYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLE 143

Query: 270 EIGTPR--VKPNV------VTWNTLISG--------------FSKSGDQVMVSKLFQLMR 307
               P   V PNV      + W+    G              F  S    M  K   L  
Sbjct: 144 NGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDD 203

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V     + + V+W +++ G V N  N+EA     EM  +G  PT  T+S+ L A A+
Sbjct: 204 ARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASAN 263

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H   IV G+  D  + +++++ Y   G I  A  +FD M E+  VTWN +
Sbjct: 264 MGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLL 323

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G    G  +EAI +   M  E  K D ++ + +++A      ++LG+ +     + Y 
Sbjct: 324 ISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEI-----QCYC 378

Query: 482 IMPRTEH----YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           I    E      +  VD+  + G +  A ++  + + + DL +W  LL A  + G   L+
Sbjct: 379 IRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDS-TVQKDLILWNTLLSAYADSG---LS 434

Query: 538 EIAAKHLSELEPESAANNMLLTDL 561
             A +   E++ ES   N++  +L
Sbjct: 435 GEALRLFYEMQLESVPPNVITWNL 458



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 14/244 (5%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P   S+   +S L  N    EA     EM  +           IL  C    ++  G++I
Sbjct: 10  PLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQI 69

Query: 373 HGCAIVMGVEGDLHVR-----SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           H   +    +GD + R     + LV  YAKC  +  A+ LF K+  RN  +W ++I    
Sbjct: 70  HAQILK---KGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKC 126

Query: 428 NHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
             G  + A+  F +M E     D+     V  AC  +     G+ +   +  K  +    
Sbjct: 127 RIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVA-KAGLHHCV 185

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
              + + D+ G+ G L +A ++   +  + +   W AL+     +G   + E A + LSE
Sbjct: 186 FVASSLADMYGKCGVLDDARKVFDYI-PDRNAVAWNALMVGYVQNG---MNEEAIRLLSE 241

Query: 547 LEPE 550
           +  E
Sbjct: 242 MRKE 245


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 162/505 (32%), Positives = 262/505 (51%), Gaps = 36/505 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R  ++G+++H Q +V G      + + ++  Y +   +  AR +FD +P+ +   W  + 
Sbjct: 133 RDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMI 192

Query: 152 GAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             Y +   + E++ VF ++  +   + +   +  +L A   L ++  G +IHSL  K   
Sbjct: 193 SGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGC 252

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +  +V++  I +YSKCG ++    +F E  + DIVA NAM+ GY   G    +L+L +E
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKE 312

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMV--------------------------SKLFQ 304
           +     +   +  +TL+S    SG  +++                          SKL +
Sbjct: 313 LMLSGAR---LRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNE 369

Query: 305 LMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           +  A+ +     E  + SW ++ISG   N   ++A   F+EM    F P   TI+ IL A
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA    +  GK +H        E  ++V +AL+ MYAKCG I+EAR LFD M+++N VTW
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTW 489

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N+MI G   HG   EA+ +F +M         ++F  VL AC H GLV+ G  +FN M  
Sbjct: 490 NTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           +Y   P  +HYACMVD+LGRAG L  A + I+ MS EP   VW  LLGAC+ H +  LA 
Sbjct: 550 RYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLAR 609

Query: 539 IAAKHLSELEPESAANNMLLTDLYA 563
             ++ L EL+P++   ++LL+++++
Sbjct: 610 TVSEKLFELDPDNVGYHVLLSNIHS 634



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 217/490 (44%), Gaps = 53/490 (10%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           ++ + R  ++      HAQ+I+ G      + TKL    ++   I++AR +F  + + ++
Sbjct: 24  LDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDV 83

Query: 145 HRWIALTGAYARRGYHQEAVTVF-HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
             +  L   ++       +++VF H      LK N       + A     D   G  IH 
Sbjct: 84  FLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHG 143

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY-------- 255
             +     ++  + S+++ MY K   VE A+KVFD M EKD +  N M+SGY        
Sbjct: 144 QAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVE 203

Query: 256 ---VQRGLATEALNLVEEIGTPRVKPNVVTWNTL-------------------------I 287
              V R L  E+   ++      + P V     L                         I
Sbjct: 204 SIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFI 263

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           S +SK G   M S LF+  R    +PD+V++ ++I G   N   + +   FKE++  G  
Sbjct: 264 SLYSKCGKIKMGSALFREFR----KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             S+T+ S++P    + ++     IHG  +         V +AL  +Y+K   I  AR L
Sbjct: 320 LRSSTLVSLVPV---SGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLV 466
           FD+  E++  +WN+MI G   +G  ++AI LF +M++ +   + ++ T +L+AC  +G +
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGAL 436

Query: 467 ELGQRLFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
            LG+ + ++++    +  I   T     ++ +  + G +AEA  +   M T+ +   W  
Sbjct: 437 SLGKWVHDLVRSTDFESSIYVST----ALIGMYAKCGSIAEARRLFDLM-TKKNEVTWNT 491

Query: 524 LLGACKNHGN 533
           ++     HG 
Sbjct: 492 MISGYGLHGQ 501



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 5/228 (2%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAANMRRGKE 371
           PDV  +  ++ G   N     +   F  +  S    P S+T +  + A +   + R G+ 
Sbjct: 81  PDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRV 140

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           IHG A+V G + +L + S +V MY K   + +AR +FD+M E++T+ WN+MI G   +  
Sbjct: 141 IHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEM 200

Query: 432 CDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
             E+I++F  +  E   +LD  +   +L A   +  + LG ++ ++   K          
Sbjct: 201 YVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLAT-KTGCYSHDYVL 259

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
              + L  + G++     + +    +PD+  + A++    ++G  EL+
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSNGETELS 306


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 157/503 (31%), Positives = 261/503 (51%), Gaps = 33/503 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G ++H      G+     +   L+  Y++C  +  AR LFD     N+  W  +   Y++
Sbjct: 318 GMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSK 377

Query: 157 RGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
            G  +    +  EM  +  ++ N   + +VL AC     + + ++IH    +H F  D  
Sbjct: 378 EGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDEL 437

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++ +  Y+KC S++ A++VF  M  K + + NA++  + Q G   ++L+L   +    
Sbjct: 438 VANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSG 497

Query: 276 VKPNVVTWNTLISG-----FSKSGDQV---MVSKLFQLMRAKGV---------------- 311
           + P+  T  +L+       F + G ++   M+    +L    G+                
Sbjct: 498 MDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGK 557

Query: 312 -------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
                     +V W  +I+G   N    EA DTF++MLS G  P    ++ +L AC+  +
Sbjct: 558 LIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVS 617

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            +R GKE+H  A+   +  D  V  AL+DMYAKCG + +++ +FD+++E++   WN +I 
Sbjct: 618 ALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIA 677

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G   HG+  +AIELF  M+ +  + D  +F  VL AC H GLV  G +    MQ  Y + 
Sbjct: 678 GYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVK 737

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P+ EHYAC+VD+LGRAG+L EA +++  M  EPD  +W +LL +C+N+G++E+ E  +K 
Sbjct: 738 PKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKK 797

Query: 544 LSELEPESAANNMLLTDLYANAG 566
           L ELEP  A N +LL++LYA  G
Sbjct: 798 LLELEPNKAENYVLLSNLYAGLG 820



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 162/321 (50%), Gaps = 46/321 (14%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLV-LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           I  +L+ACGH  +I  G K+H+LV   H    D  + + +I MYS CGS   ++ VFD  
Sbjct: 95  IGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAA 154

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPRVKPNVVTW---------------- 283
            EKD+   NA++SGY +  L  +A++L +E +    + P+  T                 
Sbjct: 155 KEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG 214

Query: 284 -------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
                              N LI+ + K G      K+F+ MR +    ++VSW SV+  
Sbjct: 215 EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNR----NLVSWNSVMYA 270

Query: 325 LVHNFCNDEAFDTFKEML---SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
              N    E    FK +L    +G  P  AT+ +++PACA+   +R G  +HG A  +G+
Sbjct: 271 CSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGI 330

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             ++ V ++LVDMY+KCG++ EAR LFD    +N V+WN++I+G +  G      EL  +
Sbjct: 331 TEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQE 390

Query: 442 M--EERKKLDHLSFTAVLTAC 460
           M  EE+ +++ ++   VL AC
Sbjct: 391 MQREEKVRVNEVTVLNVLPAC 411



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 221/491 (45%), Gaps = 52/491 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G+ +HA  + +G      +   LI  Y +C  +  A  +F+ +   N+  W ++  A
Sbjct: 211 VELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYA 270

Query: 154 YARRGYHQEAVTVFHEMHI---QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
            +  G   E   VF  + I   +GL  ++  + +V+ AC  + ++  G  +H L  K   
Sbjct: 271 CSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGI 330

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +  V +SL+DMYSKCG + +A+ +FD    K++V+ N ++ GY + G       L++E
Sbjct: 331 TEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQE 390

Query: 271 IG-TPRVKPNVVT-----------------------------------WNTLISGFSKSG 294
           +    +V+ N VT                                    N  ++ ++K  
Sbjct: 391 MQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCS 450

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                 ++F  M  K V     SW ++I     N    ++ D F  M+  G  P   TI 
Sbjct: 451 SLDCAERVFCGMEGKTVS----SWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIG 506

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L ACA    +R GKEIHG  +  G+E D  +  +L+ +Y +C  +   + +FDKM  +
Sbjct: 507 SLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENK 566

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V WN MI G + +    EA++ F QM     K   ++ T VL AC  V  + LG+ + 
Sbjct: 567 SLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVH 626

Query: 474 NMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +   + +  +       C ++D+  + G + ++  +   ++ E D  VW  ++     HG
Sbjct: 627 SFALKAH--LSEDAFVTCALIDMYAKCGCMEQSQNIFDRVN-EKDEAVWNVIIAGYGIHG 683

Query: 533 N----IELAEI 539
           +    IEL E+
Sbjct: 684 HGLKAIELFEL 694



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 207/442 (46%), Gaps = 54/442 (12%)

Query: 83  ERIEIYIR----DRALQSGKILHAQLIVSGLARLTQ---IATKLITFYTECQNIHHARML 135
           E I I +R     + +  G+ +HA  +VS   +L     ++T++I  Y+ C +   +R +
Sbjct: 93  EAIGILLRACGHHKNIHVGRKVHA--LVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGV 150

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSD 194
           FD   + ++  + AL   Y+R    ++A+++F E+     L  + F +P V KAC  ++D
Sbjct: 151 FDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVAD 210

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV-- 252
           +  GE +H+L LK    +DAFV ++LI MY KCG VE A KVF+ M  +++V+ N+++  
Sbjct: 211 VELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYA 270

Query: 253 ----------SGYVQRGLATEALNLVEEIGT-----PR---------------------V 276
                      G  +R L +E   LV ++ T     P                      +
Sbjct: 271 CSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGI 330

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
              V   N+L+  +SK G       LF +   K    +VVSW ++I G          F+
Sbjct: 331 TEEVTVNNSLVDMYSKCGYLGEARALFDMNGGK----NVVSWNTIIWGYSKEGDFRGVFE 386

Query: 337 TFKEMLSQGFCPTS-ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             +EM  +     +  T+ ++LPAC+    +   KEIHG A   G   D  V +A V  Y
Sbjct: 387 LLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAY 446

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFT 454
           AKC  +  A  +F  M  +   +WN++I   A +G+  ++++LF   M+     D  +  
Sbjct: 447 AKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIG 506

Query: 455 AVLTACCHVGLVELGQRLFNMM 476
           ++L AC  +  +  G+ +   M
Sbjct: 507 SLLLACARLKFLRCGKEIHGFM 528



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 164/329 (49%), Gaps = 13/329 (3%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R + L+ GK +H  ++ +GL     I   L++ Y +C ++   +++FD++   ++  W  
Sbjct: 514 RLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNV 573

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   +++     EA+  F +M   G+K     +  VL AC  +S +  G+++HS  LK  
Sbjct: 574 MITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAH 633

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              DAFV  +LIDMY+KCG +E+++ +FD + EKD    N +++GY   G   +A+ L E
Sbjct: 634 LSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFE 693

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK----LFQLMRAKGVEPDVVSWTSVISGL 325
            +     +P+  T+  ++   + +G   +V++    L Q+    GV+P +  +  V+  L
Sbjct: 694 LMQNKGGRPDSFTFLGVLIACNHAG---LVTEGLKYLGQMQNLYGVKPKLEHYACVVDML 750

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                  EA     EM  +   P S   SS+L +C +  ++  G+E+     ++ +E + 
Sbjct: 751 GRAGQLTEALKLVNEMPDE---PDSGIWSSLLSSCRNYGDLEIGEEVS--KKLLELEPNK 805

Query: 386 HVRSALV-DMYAKCGFISEARTLFDKMSE 413
                L+ ++YA  G   E R +  +M E
Sbjct: 806 AENYVLLSNLYAGLGKWDEVRKVRQRMKE 834



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 169/373 (45%), Gaps = 33/373 (8%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           +  L S K +H      G  +   +A   +  Y +C ++  A  +F  +    +  W AL
Sbjct: 414 EHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNAL 473

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
            GA+A+ G+  +++ +F  M   G+  + F I S+L AC  L  +  G++IH  +L++  
Sbjct: 474 IGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGL 533

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D F+  SL+ +Y +C S+   K +FD+M  K +V  N M++G+ Q  L  EAL+   +
Sbjct: 534 ELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQ 593

Query: 271 IGTPRVKPNVVTWNTLISGFSK-------------------SGDQVMVSKLFQLMRAKGV 311
           + +  +KP  +    ++   S+                   S D  +   L  +    G 
Sbjct: 594 MLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGC 653

Query: 312 ------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                       E D   W  +I+G   +    +A + F+ M ++G  P S T   +L A
Sbjct: 654 MEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIA 713

Query: 360 CASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTV 417
           C  A  +  G K +     + GV+  L   + +VDM  + G ++EA  L ++M  E ++ 
Sbjct: 714 CNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSG 773

Query: 418 TWNSMIFGCANHG 430
            W+S++  C N+G
Sbjct: 774 IWSSLLSSCRNYG 786



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 106/220 (48%), Gaps = 17/220 (7%)

Query: 326 VHNFCNDEAFDTFKEML---SQGFCPTSATISS-----ILPACASAANMRRGKEIHGCAI 377
           +HN C+    +    +L   +Q    +S+ IS      +L AC    N+  G+++H  A+
Sbjct: 60  LHNLCDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVH--AL 117

Query: 378 VMG---VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
           V     +  D+ + + ++ MY+ CG  S++R +FD   E++   +N+++ G + +    +
Sbjct: 118 VSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRD 177

Query: 435 AIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           AI LF ++     L  D+ +   V  AC  V  VELG+ +  +  +           A +
Sbjct: 178 AISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNA-L 236

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           + + G+ G +  A ++ +TM    +L  W +++ AC  +G
Sbjct: 237 IAMYGKCGFVESAVKVFETMRNR-NLVSWNSVMYACSENG 275


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 240/451 (53%), Gaps = 41/451 (9%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+  Y+E  ++  AR + D +P+ N   W  L   + +RG   EAV ++ +M   G +
Sbjct: 317 TALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCR 376

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            NI    SVL AC  L D+  G +IH+  LK    T+ FV  SLIDMY KC     A+ +
Sbjct: 377 PNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTI 436

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FD + +K                                   N+V WN+L+SG+S +G  
Sbjct: 437 FDTLPQK-----------------------------------NIVCWNSLVSGYSYNGKM 461

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           V    LF+ M A+    ++ SW ++ISG   N    +A  +F  ML+ G  P   T SS+
Sbjct: 462 VEAMYLFKKMPAR----NLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSV 517

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+  ++  GK  H   I +G+E  + + +AL DMYAK G +  ++ +F +M ERN 
Sbjct: 518 LLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERND 577

Query: 417 VTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           VTW +MI G A +G+ +E+I LF + M      +  +F A+L AC H GLVE     F+ 
Sbjct: 578 VTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDK 637

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQ    I P+ +HY CMVD+L RAGRLAEA  ++    ++ +   W ALL AC  + N E
Sbjct: 638 MQ-ALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEE 696

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +AE AAK L EL  ++ A  +LL+++YA+ G
Sbjct: 697 IAERAAKRLHELAKDNTAGYVLLSNMYASCG 727



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 172/371 (46%), Gaps = 46/371 (12%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARML 135
           SP AY   +  +++     +G I  A+ +  G+   T ++ T ++    +   +  A  L
Sbjct: 148 SPFAYDFMVSEHVK-----AGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVEL 202

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           +++ P  ++  + A    + R   H  A+ VF +M    ++ N   I  ++KAC    + 
Sbjct: 203 YEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEF 262

Query: 196 GTGEKIHSLVLKHSFGTDAF-VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           G    I  L +K +F   +  V +SLI +Y + G    A+KVFDEM  KD          
Sbjct: 263 GLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKD---------- 312

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
                                    VV+W  L+  +S+SGD     ++   M     E +
Sbjct: 313 -------------------------VVSWTALLDVYSESGDLDGARRVLDAM----PERN 343

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
            VSW ++I+         EA   + +ML+ G  P  +  SS+L ACAS  ++R G  IH 
Sbjct: 344 EVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHA 403

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
            ++ MG   ++ V  +L+DMY KC    +A+T+FD + ++N V WNS++ G + +G   E
Sbjct: 404 RSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVE 463

Query: 435 AIELFNQMEER 445
           A+ LF +M  R
Sbjct: 464 AMYLFKKMPAR 474



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 12/252 (4%)

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV---AMNAMVSGYVQ 257
           +H+  ++     D  V S L+  Y+      +  + F + V  D     A + MVS +V+
Sbjct: 102 LHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFMVSEHVK 161

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
            G    A  L +  G P     VV++ T++    K G      +L++    +     V  
Sbjct: 162 AGDIASARRLFD--GMP--DRTVVSYTTMVDALMKRGRVAEAVELYE----QCPSGSVAF 213

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           +T+ ISG V N  +  A   F++MLS    P   TI  ++ AC  A        I G AI
Sbjct: 214 FTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAI 273

Query: 378 VMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
                E  + V+++L+ +Y + G  + AR +FD+M  ++ V+W +++   +  G  D A 
Sbjct: 274 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 333

Query: 437 ELFNQMEERKKL 448
            + + M ER ++
Sbjct: 334 RVLDAMPERNEV 345



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 109/249 (43%), Gaps = 14/249 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L +GK+ HA+ I  G+     I T L   Y +  ++  ++ +F ++P+ N   W A+  
Sbjct: 526 SLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQ 585

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G+ +E++ +F +M   G+  N     ++L AC H   +   + IH      + G 
Sbjct: 586 GLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLV--EQAIHYFDKMQALGI 643

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEK----DIVAMNAMVSGYVQRGLATEALN 266
                  + ++D+ ++ G + +A+ +  +   K       A+ +  + Y    +A  A  
Sbjct: 644 SPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEEIAERAAK 703

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSWTSVISGL 325
            + E+     K N   +  L + ++  G     +++  LM+   ++ D   SW  V  G 
Sbjct: 704 RLHELA----KDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQV-RGQ 758

Query: 326 VHNFCNDEA 334
            H F + EA
Sbjct: 759 YHAFFSWEA 767


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 251/470 (53%), Gaps = 40/470 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +HA+++  G      ++  LI  Y  C ++  A+ +FDE+P+ ++  W +L   Y +
Sbjct: 96  GSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQ 155

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +E + VF  M + G+K +   +  V+ AC  L + G  + +   + +++   D ++
Sbjct: 156 CKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYL 215

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LIDMY + G V  A+ VFD+M  +                                 
Sbjct: 216 GNTLIDMYGRRGLVHLARGVFDQMQWR--------------------------------- 242

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             N+V+WN +I G+ K+G+ V   +LF  M  +    DV+SWT++I+         EA  
Sbjct: 243 --NLVSWNAMIMGYGKAGNLVAARELFDAMSQR----DVISWTNMITSYSQAGQFTEALR 296

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            FKEM+     P   T++S+L ACA   ++  G+  H       V+ D++V +AL+DMY 
Sbjct: 297 LFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYC 356

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTA 455
           KCG + +A  +F +M ++++V+W S+I G A +G+ D A++ F++M  E  +  H +F  
Sbjct: 357 KCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVG 416

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           +L AC H GLV+ G   F  M++ Y + P  +HY C+VDLL R+G L  A+E IK M   
Sbjct: 417 ILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVT 476

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           PD+ +W  LL A + HGNI LAEIA K L EL+P ++ N +L ++ YA +
Sbjct: 477 PDVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGS 526



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 14/137 (10%)

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTA 459
           I +A  LF ++       WN MI G +     +EAI ++N M  +  L ++L++  +  A
Sbjct: 27  ILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKA 86

Query: 460 CCHVGLVELGQ----RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           C  V  V  G     R+  +  E +  +        ++++ G  G L  A ++   M  E
Sbjct: 87  CARVPDVSCGSTIHARVLKLGFESHLYVSNA-----LINMYGSCGHLGLAQKVFDEM-PE 140

Query: 516 PDLFVWGALL---GACK 529
            DL  W +L+   G CK
Sbjct: 141 RDLVSWNSLVCGYGQCK 157


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 249/470 (52%), Gaps = 40/470 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA L+ +     +   +++ +      +  +A+++F  +  + +  W     ++A  
Sbjct: 32  KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
               +A+++F+ +    +  + +    VLKAC  L D+  G+ +H  V K    ++ F+ 
Sbjct: 92  DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQ 151

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           + ++ +Y+ CG +  A+KVFD+M ++D                                 
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRD--------------------------------- 178

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             V+TWN +I+   K GD     KLF    A+  E +V SWTS+I G      + EA D 
Sbjct: 179 --VITWNIMIARLVKMGDAEGAYKLF----AEMPERNVRSWTSMIGGYAQCGKSKEAIDL 232

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F EM   G  P   T+ ++L ACA   N+  G+ IH  +   G E ++ V + L+DMY K
Sbjct: 233 FLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVK 292

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAV 456
           CG + +A  +FD M ER  V+W++MI G A HG  ++A+ LFN+M     K + ++F  +
Sbjct: 293 CGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGI 352

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L AC H+G+VE G++ F  M   Y I+PR EHY CMVDL  RAG L EA+E I  M   P
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAP 412

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +  VWGALLG CK H NI+LAE A +HLS+L+P +    ++L+++YA AG
Sbjct: 413 NGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAG 462



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/491 (24%), Positives = 206/491 (41%), Gaps = 62/491 (12%)

Query: 9   PIRDKPFQFTLSM---NDFYSIRRIYFALLSGTQLVL--SCSKSASDAGKPLINGIFIEA 63
           P+   P     S+   N  +S  ++ F LL  +++    +C +S ++   P      I  
Sbjct: 44  PLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSP---ADAISL 100

Query: 64  HYKMPIISRSFHLSPAAYSERIEIYIRDRAL--QSGKILHAQLIVSGLARLTQIATKLIT 121
            Y++    R F +SP  Y+    +    R L  ++GKI+H  +   GL     +   ++ 
Sbjct: 101 FYRL----REFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVH 156

Query: 122 FYTECQNIHHARMLFD-------------------------------EIPKTNIHRWIAL 150
            Y  C  I  AR +FD                               E+P+ N+  W ++
Sbjct: 157 LYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSM 216

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
            G YA+ G  +EA+ +F EM   GL  N   + +VL AC  + ++  G +IH    +  +
Sbjct: 217 IGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGY 276

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +  V ++LIDMY KCG +E A ++FD M E+ +V+ +AM++G    G A +AL L  +
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNF 329
           +    VKPN VT+  ++   S  G      K F  M R  G+ P +  +  ++       
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAG 396

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
              EA +    M      P      ++L  C    N++  +E       +    D +   
Sbjct: 397 LLQEAHEFIMNM---PIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYY-V 452

Query: 390 ALVDMYAKCGF---ISEARTLFDKMSERNTVTWNSM---------IFGCANHGYCDEAIE 437
            L ++YA+ G    ++  R L      + T  W+S+         + G   H   +E  +
Sbjct: 453 VLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQ 512

Query: 438 LFNQMEERKKL 448
            + ++ +R KL
Sbjct: 513 TWEKLLQRMKL 523


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 255/474 (53%), Gaps = 18/474 (3%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           Q+G +  A+ + + +     I+   L+  Y     +  AR LF+      +  W  L G 
Sbjct: 151 QNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGG 210

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +R    +A  +F  M ++    ++    +++     + D+   +++       S   D
Sbjct: 211 YVKRNMLGDARQLFDRMPVR----DVISWNTMISGYAQVGDLSQAKRL----FNESPIRD 262

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F  ++++  Y + G V++A+K FDEM  K+ ++ NAM++GYVQ      A  L E +  
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC 322

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                N+ +WNT+I+G+ ++G      KLF +M  +    D VSW ++ISG   N   +E
Sbjct: 323 R----NISSWNTMITGYGQNGGIAQARKLFDMMPQR----DCVSWAAIISGYAQNGHYEE 374

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A + F EM   G     +T S  L  CA  A +  GK++HG  +  G E    V +AL+ 
Sbjct: 375 ALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLG 434

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
           MY KCG   EA  +F+ + E++ V+WN+MI G A HG+  +A+ LF  M++   K D ++
Sbjct: 435 MYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEIT 494

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
              VL+AC H GL++ G   F  M   Y + P ++HY CM+DLLGRAGRL EA  +++ M
Sbjct: 495 MVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNM 554

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +P    WGALLGA + HGN EL E AA+ + ++EP+++   +LL++LYA +G
Sbjct: 555 PFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASG 608



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 13/329 (3%)

Query: 93  ALQSGKILHAQLIVSG------LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHR 146
           A+ +G + + +++++G        R       +IT Y +   I  AR LFD +P+ +   
Sbjct: 299 AMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVS 358

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W A+   YA+ G+++EA+ +F EM   G   N       L  C  ++ +  G+++H  V+
Sbjct: 359 WAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVV 418

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K  F T  FV ++L+ MY KCGS ++A  VF+ + EKD+V+ N M++GY + G   +AL 
Sbjct: 419 KAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALV 478

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGL 325
           L E +    VKP+ +T   ++S  S SG     ++ F  M R   V+P    +T +I  L
Sbjct: 479 LFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLL 538

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD- 384
                 +EA +  + M    F P +A+  ++L A     N   G++       M  +   
Sbjct: 539 GRAGRLEEAENLMRNM---PFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSG 595

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSE 413
           ++V   L ++YA  G   +   +  KM E
Sbjct: 596 MYV--LLSNLYAASGRWVDVGKMRSKMRE 622



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 161/351 (45%), Gaps = 46/351 (13%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    +  I  + + G  + A +VF+ M  +  V+ NAM+SGY++    + A +L +++ 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKM- 103

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + ++ +WN +++G+ ++       KLF LM  K    DVVSW +++SG   N   D
Sbjct: 104 ---PERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKK----DVVSWNAMLSGYAQNGFVD 156

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA + F +M  +     S + + +L A      ++  + +           +L   + L+
Sbjct: 157 EAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQ----SNWELISWNCLM 208

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS 452
             Y K   + +AR LFD+M  R+ ++WN+MI G A  G   +A  LFN+   R   D  +
Sbjct: 209 GGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIR---DVFT 265

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKI------------------------MP--RT 486
           +TA+++     G+V+  ++ F+ M  K +I                        MP    
Sbjct: 266 WTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNI 325

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             +  M+   G+ G +A+A ++   M  + D   W A++     +G+ E A
Sbjct: 326 SSWNTMITGYGQNGGIAQARKLFDMM-PQRDCVSWAAIISGYAQNGHYEEA 375



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 161/382 (42%), Gaps = 79/382 (20%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-- 270
           D F  + ++  Y +   + +A K+FD M +KD+V+ NAM+SGY Q G   EA  +  +  
Sbjct: 107 DLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP 166

Query: 271 --------------IGTPRVKP-----------NVVTWNTLISGFSKS---GDQ------ 296
                         +   R+K             +++WN L+ G+ K    GD       
Sbjct: 167 HRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDR 226

Query: 297 ----------------VMVSKLFQLMRAKGVEP--DVVSWTSVISGLVHNFCNDEAFDTF 338
                             V  L Q  R     P  DV +WT+++SG V N   DEA   F
Sbjct: 227 MPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYF 286

Query: 339 KEMLSQGFCPTSATIS--SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            EM      P    IS  ++L        M    E+        +       + ++  Y 
Sbjct: 287 DEM------PVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISS----WNTMITGYG 336

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS-FTA 455
           + G I++AR LFD M +R+ V+W ++I G A +G+ +EA+ +F +M+   +  + S F+ 
Sbjct: 337 QNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSC 396

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD--LLG---RAGRLAEAYEMIK 510
            L+ C  +  +ELG+++        +++       C V   LLG   + G   EA ++ +
Sbjct: 397 ALSTCADIAALELGKQVHG------QVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFE 450

Query: 511 TMSTEPDLFVWGALLGACKNHG 532
            +  E D+  W  ++     HG
Sbjct: 451 GIE-EKDVVSWNTMIAGYARHG 471



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 17/227 (7%)

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           +PD+V+W   IS  + N   D A   F  M  +     +A IS  L      A     ++
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYL----RNAKFSLARD 98

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +         E DL   + ++  Y +   + EA  LFD M +++ V+WN+M+ G A +G+
Sbjct: 99  LFDKM----PERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGF 154

Query: 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            DEA E+FN+M  R   + +S+  +L A  H G ++  +RLF   Q  ++++     + C
Sbjct: 155 VDEAREVFNKMPHR---NSISWNGLLAAYVHNGRLKEARRLFE-SQSNWELIS----WNC 206

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           ++    +   L +A ++   M    D+  W  ++      G++  A+
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMPVR-DVISWNTMISGYAQVGDLSQAK 252



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 130/282 (46%), Gaps = 26/282 (9%)

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
           P++VTWN  IS   ++G      ++F  M  +      VS+ ++ISG + N     A D 
Sbjct: 44  PDIVTWNKAISSHMRNGHCDSALRVFNSMPRR----SSVSYNAMISGYLRNAKFSLARDL 99

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F +M      P     S  +       N R G E H    +M  + D+   +A++  YA+
Sbjct: 100 FDKM------PERDLFSWNVMLTGYVRNRRLG-EAHKLFDLM-PKKDVVSWNAMLSGYAQ 151

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457
            GF+ EAR +F+KM  RN+++WN ++    ++G   EA  LF   E +   + +S+  ++
Sbjct: 152 NGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLF---ESQSNWELISWNCLM 208

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
                  ++   ++LF+ M  +  I   T     M+    + G L++A  +    S   D
Sbjct: 209 GGYVKRNMLGDARQLFDRMPVRDVISWNT-----MISGYAQVGDLSQAKRLFNE-SPIRD 262

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSEL--EPESAANNML 557
           +F W A++     +G   + + A K+  E+  + E + N ML
Sbjct: 263 VFTWTAMVSGYVQNG---MVDEARKYFDEMPVKNEISYNAML 301



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 13/130 (10%)

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           K  + + VTWN  I     +G+CD A+ +FN M  R     +S+ A+++         L 
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSS---VSYNAMISGYLRNAKFSLA 96

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLG--RAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           + LF+        MP  + ++  V L G  R  RL EA+++   M  + D+  W A+L  
Sbjct: 97  RDLFDK-------MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKK-DVVSWNAMLSG 148

Query: 528 CKNHGNIELA 537
              +G ++ A
Sbjct: 149 YAQNGFVDEA 158



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 9/171 (5%)

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           RR    +  + V   + D+   +  +  + + G    A  +F+ M  R++V++N+MI G 
Sbjct: 28  RRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGY 87

Query: 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
             +     A +LF++M ER   D  S+  +LT       +    +LF++M +K  +    
Sbjct: 88  LRNAKFSLARDLFDKMPER---DLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV---- 140

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             +  M+    + G + EA E+   M     +  W  LL A  ++G ++ A
Sbjct: 141 -SWNAMLSGYAQNGFVDEAREVFNKMPHRNSI-SWNGLLAAYVHNGRLKEA 189


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/511 (33%), Positives = 262/511 (51%), Gaps = 41/511 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G  +H+   + GL     + T L+ FY +C  +  A+ LF  +   ++  W A+  
Sbjct: 124 AIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIA 183

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             +  G   +AV +  +M  +G+  N   I  VL   G    +G G+ +H   ++ SF  
Sbjct: 184 GCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN 243

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-I 271
              V + L+DMY+KC  +  A+K+FD M  ++ V+ +AM+ GYV      EAL L ++ I
Sbjct: 244 GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMI 303

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
               + P  VT                                    NTL+S ++K G  
Sbjct: 304 LKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVI 363

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               + F  M  K    D VS+++++SG V N     A   F+ M   G  P   T+  +
Sbjct: 364 DDAIRFFDXMNPK----DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGV 419

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPAC+  A ++ G   HG  IV G   D  + +AL+DMY+KCG IS AR +F++M   + 
Sbjct: 420 LPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 479

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN+MI G   HG   EA+ LF+ +     K D ++F  +L++C H GLV  G+  F+ 
Sbjct: 480 VSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDA 539

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M   + I+PR EH  CMVD+LGRAG + EA+  I+ M  EPD+ +W ALL AC+ H NIE
Sbjct: 540 MSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIE 599

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L E  +K +  L PES  N +LL+++Y+ AG
Sbjct: 600 LGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 237/493 (48%), Gaps = 51/493 (10%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   +E  I+ ++L   K +H   + +     + +  KL   Y  C  +  AR LFDEIP
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             ++  W  +  AYA  G    A+ ++H M   G++ N +  P VLKAC  L  I  G +
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IHS        +D FV ++L+D Y+KCG + +A+++F  M  +D+VA NAM++G    GL
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 261 ATEALNLVEEIGTPRVKPN-----------------------------------VVTWNT 285
             +A+ L+ ++    + PN                                   VV    
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQ 344
           L+  ++K    +   K+F +M   GV  + VSW+++I G V + C  EA + F +M L  
Sbjct: 251 LLDMYAKCQCLLYARKIFDVM---GVRNE-VSWSAMIGGYVXSDCMKEALELFDQMILKD 306

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
              PT  T+ S+L ACA   ++ RG+++H   I +G   D+ + + L+ MYAKCG I +A
Sbjct: 307 AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDA 366

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHV 463
              FD M+ +++V++++++ GC  +G    A+ +F  M+      D  +   VL AC H+
Sbjct: 367 IRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHL 426

Query: 464 GLVELGQRLFNMMQEKYKIMP--RTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
             ++ G          Y I+    T+   C  ++D+  + G+++ A E+   M    D+ 
Sbjct: 427 AALQHG-----FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH-DIV 480

Query: 520 VWGALLGACKNHG 532
            W A++     HG
Sbjct: 481 SWNAMIIGYGIHG 493



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 10/203 (4%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L AC  + ++   K+IH   +      D  V   L  +Y  C  +  AR LFD++   +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            + WN +I   A +G  D AI+L++ M     + +  ++  VL AC  +  +E G  + +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 475 MMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             +        ++ + C  +VD   + G L EA  +  +MS   D+  W A++  C  +G
Sbjct: 134 HAK---MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYG 189

Query: 533 NIELAEIAAKHLSELEPESAANN 555
              L + A + + +++ E    N
Sbjct: 190 ---LCDDAVQLIMQMQEEGICPN 209


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 176/523 (33%), Positives = 271/523 (51%), Gaps = 47/523 (8%)

Query: 86  EIYIRDRALQSGKILHAQLIVSGLARLT-QIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           E  I +  L+ G+++H  ++ +GL  L   ++  L+  Y +C  I  A  +F  +  T+ 
Sbjct: 387 EYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDR 446

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W  +  A  + G  +EAV  +  M    +  + F + S L +C  L  +  G+++H  
Sbjct: 447 ISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCD 506

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV------------ 252
            +K     D  V + L+ MY +CG++    KVF+ M E D V+ N M+            
Sbjct: 507 AVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISE 566

Query: 253 -----SGYVQRGLATEALNLVE-----------EIGTPR---------VKPNVVTWNTLI 287
                +  ++ GL    +  +            E+G            ++ NVV  N LI
Sbjct: 567 IVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVD-NALI 625

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           S ++KSGD      LF  M  +    D +SW S+ISG ++N    EA D    M+  G  
Sbjct: 626 SCYAKSGDMGSCEHLFTNMSDR---RDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQI 682

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
               T S IL ACAS A + RG E+H   I   +E D+ V SALVDMY+KCG +  A  L
Sbjct: 683 MDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKL 742

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLV 466
           F+ M++RN  +WNSMI G A HG   +AIE+F +M   R+  DH++F +VL+AC H GLV
Sbjct: 743 FNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLV 802

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           E G   F MM + + I+P+ EHY+C++DLLGRAG++ +  E I+ M  EP+  +W  +L 
Sbjct: 803 ERGLEYFEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLV 861

Query: 527 AC---KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AC   K+  NI+L   A++ L E+EP++  N +L ++ +A  G
Sbjct: 862 ACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATG 904



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 216/480 (45%), Gaps = 60/480 (12%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LH +LI  GL     +   L+  Y +   +  A  +FDE+P+ N   W  L   Y   G 
Sbjct: 83  LHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGI 142

Query: 160 HQEAVTVFHEM--HIQ-GLKQNIFVIPSVLKAC--GHLSDIGTGEKIHSLVLKHSFGTDA 214
            +EA  VF  M   +Q G +   F   ++L+AC  G    +G   ++H LV K  + ++ 
Sbjct: 143 AEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNT 202

Query: 215 FVVSSLIDMYSKC--GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI- 271
            V ++LI MY  C  G    A++VFD    +D++  NA++S Y ++G       L +++ 
Sbjct: 203 TVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQ 262

Query: 272 -GTPRV--KPNVVTWNTLISGFSKSG------DQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
            G  R+  +P   T+ +LI+  S S       DQV+V  L       G   D+   ++++
Sbjct: 263 RGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVL-----KSGCSSDLYVGSALV 317

Query: 323 SGLVHNFCNDEAFDTFKE---------------MLSQGFCPTSATI-------------- 353
           S    +   DEA D F                 ++ Q F   +  I              
Sbjct: 318 SAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADT 377

Query: 354 -----SSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTL 407
                S++     S   +R G+ +HG  +  G+ +  + V + LV+MYAKCG I  A  +
Sbjct: 378 YVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKI 437

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLV 466
           F  M   + ++WN++I     +G C+EA+  ++ M +      + +  + L++C  + L+
Sbjct: 438 FQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLL 497

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
             GQ++ +    K+ +   T     +V + G  G +++ +++  +M+ E D   W  ++G
Sbjct: 498 TAGQQV-HCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMA-EHDEVSWNTMMG 555



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 213/477 (44%), Gaps = 61/477 (12%)

Query: 113 TQIATKLITFYTECQNIHH--ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
           T +   LI+ Y  C       A+ +FD  P  ++  W AL   YA++G      T+F +M
Sbjct: 202 TTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDM 261

Query: 171 HIQGLKQNIFVIPS-------VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223
             Q     I + P+       +  A          +++   VLK    +D +V S+L+  
Sbjct: 262 --QRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSA 319

Query: 224 YSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR-VKPNVVT 282
           +++ G  ++AK +F  + +K+ V +N ++ G V++  + EA+ +   +GT   V  N  T
Sbjct: 320 FARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIF--VGTRNTVDVNADT 377

Query: 283 W----------------------------------------NTLISGFSKSGDQVMVSKL 302
           +                                        N L++ ++K G     SK+
Sbjct: 378 YVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKI 437

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           FQLM A     D +SW ++IS L  N   +EA   +  M      P++  + S L +CA 
Sbjct: 438 FQLMEAT----DRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAG 493

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  G+++H  A+  G++ D  V + LV MY +CG +S+   +F+ M+E + V+WN+M
Sbjct: 494 LKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTM 553

Query: 423 I-FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +    ++     E +++FN M     + + ++F  +L A   + ++ELG+++   +  K+
Sbjct: 554 MGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVM-KH 612

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            +M        ++    ++G +     +   MS   D   W +++     +GN++ A
Sbjct: 613 GVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEA 669



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 171/364 (46%), Gaps = 22/364 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTG 152
           L+ GK +HA ++  G+     +   LI+ Y +  ++     LF  +  + +   W ++  
Sbjct: 599 LELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMIS 658

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G  QEA+     M   G   +      +L AC  ++ +  G ++H+  ++    +
Sbjct: 659 GYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLES 718

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V S+L+DMYSKCG V+ A K+F+ M +++  + N+M+SGY + GL  +A+ + EE+ 
Sbjct: 719 DVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEML 778

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
             R  P+ VT+ +++S  S +G      + F++M   G+ P +  ++ VI  L      D
Sbjct: 779 RSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKID 838

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPAC---ASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           +  +  + M  +   P +    ++L AC      +N+  G+E     +++ +E    V  
Sbjct: 839 KIKEYIQRMPIE---PNALIWRTVLVACRQSKDGSNIDLGRE--ASRVLLEIEPQNPVNY 893

Query: 390 ALV-DMYAKCGF---ISEARTLFDKMSE-----RNTVTWN----SMIFGCANHGYCDEAI 436
            L  + +A  G     ++ART   + +E     R+ VT N    + I G  +H    E  
Sbjct: 894 VLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIY 953

Query: 437 ELFN 440
           E  N
Sbjct: 954 EKLN 957



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 182/424 (42%), Gaps = 57/424 (13%)

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
           D  + E +H  ++K     D F+ + L++ Y+K   +  A +VFDEM E++ V+   +VS
Sbjct: 76  DANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVS 135

Query: 254 GYVQRGLATEALN----LVEEIGTPRVKPNVVTWNTLISGFSKSGD-------QV--MVS 300
           GYV  G+A EA      ++ E+     +P   T+ TL+      G        QV  +VS
Sbjct: 136 GYVLHGIAEEAFRVFRAMLREV-QAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVS 194

Query: 301 K------------LFQLMRAKGVEP--------------DVVSWTSVISGLVHNFCNDEA 334
           K            L  +  +  V P              D+++W +++S           
Sbjct: 195 KTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVAST 254

Query: 335 FDTFKEMLSQG-----FCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVR 388
           F  FK+M  +G       PT  T  S++ A + ++       ++    +  G   DL+V 
Sbjct: 255 FTLFKDM-QRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVG 313

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           SALV  +A+ G   EA+ +F  + ++N VT N +I G     + +EA+++F        +
Sbjct: 314 SALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDV 373

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC----MVDLLGRAGRLAE 504
           +  ++  +L+A     + E G R+  ++         T+        +V++  + G +  
Sbjct: 374 NADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIES 433

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE--SAANNMLLTDLY 562
           A ++ + M    D   W  ++ A   +GN    E A  H S +     S +N  L++ L 
Sbjct: 434 ASKIFQLMEA-TDRISWNTIISALDQNGN---CEEAVMHYSLMRQSCISPSNFALISSLS 489

Query: 563 ANAG 566
           + AG
Sbjct: 490 SCAG 493



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           + +LP      +    + +H   I  G+  DL + + LV+ YAK   ++ A  +FD+M E
Sbjct: 65  ADLLPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPE 124

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM----EERKKLDHLSFTAVLTACCHVGLVELG 469
           RN V+W  ++ G   HG  +EA  +F  M    +   +    +F  +L AC   G   LG
Sbjct: 125 RNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLG 184


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 260/475 (54%), Gaps = 50/475 (10%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H Q IV+GL     +   LI  Y E   +  A  +F+++P  +I  +  +   YA++
Sbjct: 83  KQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKK 142

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV--LKHSFGTDAF 215
           G+  EA+ +FHEM   GL+ + F I  +L +CG L ++  G+ +H  +   K +  ++  
Sbjct: 143 GFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLI 202

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++L+DMY KC  VE A + F  + EKDIV                             
Sbjct: 203 LGNALLDMYVKCQKVELALRTFGALKEKDIV----------------------------- 233

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                 +WN +++G +K G+       F  M  +    D+VSW S+++G     C  + F
Sbjct: 234 ------SWNMIVAGCAKVGELEQARLFFYQMPCR----DIVSWNSLVTGYA---CRGD-F 279

Query: 336 DTFKE----MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            + KE    M+ +   P + T+ S++ A   +  + +G+  HG  I M ++ D  + SAL
Sbjct: 280 ASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSAL 339

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451
           +DMY KCG I  A  +F ++++++   W +MI G A HGY  +A+ELF++M+E    D +
Sbjct: 340 IDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDV 399

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F +VL+AC H GLV+ G ++F+ M + Y I P  EHY C+VDLL R+GRL+EA ++I  
Sbjct: 400 TFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQ 458

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  +P   +WGA+L AC+  G++ELAEIA++ L  L+PE      LL+++YA +G
Sbjct: 459 MPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASG 513



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 24/308 (7%)

Query: 66  KMPIISRSFHLSPAAYS-----ERIEIYIRD-RALQSGKILHAQLIVSGLARLTQIATKL 119
           + P IS +  L  A        +++E+ +R   AL+   I+   +IV+G A++ ++    
Sbjct: 193 RKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGEL---- 248

Query: 120 ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
                       AR+ F ++P  +I  W +L   YA RG       +  +M ++ +  + 
Sbjct: 249 ----------EQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDT 298

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
             + S++ A      +  G   H  V++     DAF+ S+LIDMY KCGS+E+A +VF E
Sbjct: 299 VTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKE 358

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           + +KD+     M++G    G  ++AL L  E+    V P+ VT+ +++S  S SG     
Sbjct: 359 INKKDVTVWTTMITGLAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVDQG 417

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            K+F  M   G+EP V  +  ++  L  +    EA D   +M  +   P+ +   ++L A
Sbjct: 418 IKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMK---PSRSIWGAMLNA 474

Query: 360 CASAANMR 367
           C +  ++ 
Sbjct: 475 CQAQGDVE 482



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 19/246 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+  H  +I   +     + + LI  Y +C +I  A  +F EI K ++  W  +  
Sbjct: 313 ALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMIT 372

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  GY  +A+ +F EM  + +  +     SVL AC H   +  G K+ S +  +    
Sbjct: 373 GLAFHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEP 431

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM-NAMVSGYVQRG-------LATEA 264
                  L+D+ ++ G + +AK + D+M  K   ++  AM++    +G        + E 
Sbjct: 432 GVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASREL 491

Query: 265 LNL-VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           LNL  EE G   +  N+         ++ SG      K+ + M ++GV+      + V+ 
Sbjct: 492 LNLDPEEEGGYTLLSNI---------YAASGRWSYSKKIRETMESRGVKKTAGCSSVVVD 542

Query: 324 GLVHNF 329
           G+VHNF
Sbjct: 543 GVVHNF 548



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 110/229 (48%), Gaps = 7/229 (3%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P++  + ++IS    +    E+F  +  +LS G CP   T+  +L A    + +   K+I
Sbjct: 30  PNLFIYNTLISAF-SSLKKIESFYLYNVLLSSGECPDKQTLLYLLQAVNFISQV---KQI 85

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H  AIV G+    ++++ L+ +Y + G +  A  +F+KM   + V++N MI G A  G+ 
Sbjct: 86  HCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFG 145

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA- 490
            EA+ LF++M     + D  +   +L +C  +G V+ G+ +   M+ +   +        
Sbjct: 146 LEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGN 205

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
            ++D+  +  ++  A      +  E D+  W  ++  C   G +E A +
Sbjct: 206 ALLDMYVKCQKVELALRTFGALK-EKDIVSWNMIVAGCAKVGELEQARL 253


>gi|357147690|ref|XP_003574443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Brachypodium distachyon]
          Length = 859

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 249/453 (54%), Gaps = 5/453 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIH----RWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           LI+ Y    +++ A  L +++ ++ +      W +L   +       EA+  F  M + G
Sbjct: 258 LISSYARSGDLNVAVELLEQMEESGVEPDVVTWTSLVSGFVHSDRGVEALQCFIRMRLAG 317

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++ N   I   + AC  L  +  G  +H   +K     +    +SL+DMY+KCG    A 
Sbjct: 318 VEPNGMTIACAISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAAS 377

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           ++F+++ EKDI + N+MV+GY Q G   +A  L  ++    ++ N +TWNT+ISG+ ++G
Sbjct: 378 RIFNQIPEKDIFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRNAITWNTMISGYIRNG 437

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           D     +LFQ M + GV+ D  SW  +I+G VHN   D A   F++M +    P   T+ 
Sbjct: 438 DDERAFELFQTMESYGVKRDTASWNILIAGSVHNGYFDRALRIFRQMQAVLIKPDYITVL 497

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           SI+PA A+     + +EIH C     +E D  + +AL++ Y+K G ++ A  +FD+ S R
Sbjct: 498 SIIPAFANLVAAWKVREIHACIFHHNLEIDGKIANALINAYSKSGDLAGACAVFDRHSSR 557

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           N ++WN +I     HG   E +  F +M+++  L DH + TAV+ A     +V  G+ +F
Sbjct: 558 NIISWNCIIVAHLLHGSPTEVLNHFYKMKQQGVLPDHTTLTAVIKAYGMEAMVSEGREIF 617

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M++ Y + P  +HY  MVDLLGR+GRL EAYE+I  M   P+L VW ALL +   HGN
Sbjct: 618 LNMEKNYNVTPDLDHYTAMVDLLGRSGRLQEAYELIDEMPLTPNLTVWEALLTSAIMHGN 677

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + LA +AA  +S++EP      M+++ L   AG
Sbjct: 678 VRLAHLAATEMSDIEPSDLRIQMVVSGLQDLAG 710



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/421 (32%), Positives = 226/421 (53%), Gaps = 8/421 (1%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           TKLI F++    +  AR +FD +   ++  W ++ GAYA RG   E + +  +M  +G+ 
Sbjct: 86  TKLIAFHSSAGRLDDARKVFDGMSHKDLLAWSSMIGAYATRGMFDEVLVLAVKMVSEGVL 145

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF---GTDAFVVSSLIDMYSKCGSVEKA 233
            + F+I  +L+AC +  D+  G  +HS+ ++  F     D  V +S++ MY KCG +  A
Sbjct: 146 PDRFLITRILQACAYAEDLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYVKCGELGFA 205

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           + VF++M  +D+   N+M+ G  +     EA  L++++    ++P VVTWNTLIS +++S
Sbjct: 206 RVVFEKMGRRDLGTWNSMIFGCCRSCKWEEARRLLDDMRKEGIEPGVVTWNTLISSYARS 265

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD  +  +L + M   GVEPDVV+WTS++SG VH+    EA   F  M   G  P   TI
Sbjct: 266 GDLNVAVELLEQMEESGVEPDVVTWTSLVSGFVHSDRGVEALQCFIRMRLAGVEPNGMTI 325

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +  + ACAS   + +G  +H  AI +G   ++   ++LVDMYAKCG    A  +F+++ E
Sbjct: 326 ACAISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAASRIFNQIPE 385

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           ++  +WNSM+ G A  GYC +A ELF +ME    + + +++  +++     G  E    L
Sbjct: 386 KDIFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRNAITWNTMISGYIRNGDDERAFEL 445

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST---EPDLFVWGALLGACK 529
           F  M E Y +   T  +  ++      G    A  + + M     +PD     +++ A  
Sbjct: 446 FQTM-ESYGVKRDTASWNILIAGSVHNGYFDRALRIFRQMQAVLIKPDYITVLSIIPAFA 504

Query: 530 N 530
           N
Sbjct: 505 N 505



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 151/380 (39%), Gaps = 80/380 (21%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L  G +LH   I  G  +       L+  Y +C     A  +F++IP+ +I  W ++ 
Sbjct: 336 KLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAASRIFNQIPEKDIFSWNSMV 395

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ GY  +A  +F +M   G+++N                                 
Sbjct: 396 AGYAQAGYCGKAYELFCKMENYGIRRN--------------------------------- 422

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNL 267
             A   +++I  Y + G  E+A ++F  M    V++D  + N +++G V  G    AL +
Sbjct: 423 --AITWNTMISGYIRNGDDERAFELFQTMESYGVKRDTASWNILIAGSVHNGYFDRALRI 480

Query: 268 VEEIGTPRVKPNVVT--------------W---------------------NTLISGFSK 292
             ++    +KP+ +T              W                     N LI+ +SK
Sbjct: 481 FRQMQAVLIKPDYITVLSIIPAFANLVAAWKVREIHACIFHHNLEIDGKIANALINAYSK 540

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           SGD      +F    ++    +++SW  +I   + +    E  + F +M  QG  P   T
Sbjct: 541 SGDLAGACAVFDRHSSR----NIISWNCIIVAHLLHGSPTEVLNHFYKMKQQGVLPDHTT 596

Query: 353 ISSILPACASAANMRRGKEIH-GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           +++++ A    A +  G+EI         V  DL   +A+VD+  + G + EA  L D+M
Sbjct: 597 LTAVIKAYGMEAMVSEGREIFLNMEKNYNVTPDLDHYTAMVDLLGRSGRLQEAYELIDEM 656

Query: 412 S-ERNTVTWNSMIFGCANHG 430
               N   W +++     HG
Sbjct: 657 PLTPNLTVWEALLTSAIMHG 676


>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/474 (36%), Positives = 271/474 (57%), Gaps = 23/474 (4%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           +HA ++ +G  +   ++TKLI   T C     + +AR +FD++PK ++  W  L   YA 
Sbjct: 48  IHALVVTNGCGQNLLLSTKLII--TACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  +EA+ ++  MH  GL  + +  P V+++C  LS +  G+++H  ++KH F +D FV
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFV 165

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            SSL+ MYS+ G     + VF EMV ++IV+  A+++GYVQ     E L +  E+     
Sbjct: 166 QSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT 225

Query: 277 KPNVVTWNTLISGFSKSGDQVM-VSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDE- 333
           +PN VT  +++   + +G + + + KL      K GV+PDV S T+ +  L     N E 
Sbjct: 226 QPNAVTLVSVLP--ACAGLEFLNLGKLIHGYGIKLGVDPDV-SLTNALIALYGKCGNVET 282

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   F  M+ Q     +A I++     A A  ++  + +        V+ D     +++ 
Sbjct: 283 ARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQA----EKVDFDYITMVSVIS 338

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
            Y        AR +F+++  R+ V+W SMI  CA+HG+ ++A++LF++M +E  K +  +
Sbjct: 339 AYL-------AREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFT 391

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F AV TAC H GLVE G++ F  M   Y IMP  EH ACMVDLLGRAG L EAYE I  M
Sbjct: 392 FAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKM 451

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             EPD+ VWGALLG+C+ H N+ELAE+ A+ L  L+P++    +L++++YA AG
Sbjct: 452 PVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAG 505



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 166/343 (48%), Gaps = 21/343 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H  ++  G      + + L+  Y++        ++F E+   NI  W A+  
Sbjct: 143 ALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIA 202

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y +  Y +E + VF EM   G + N   + SVL AC  L  +  G+ IH   +K     
Sbjct: 203 GYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDP 262

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + ++LI +Y KCG+VE A+ +FD MV +++V+ NAM++ Y Q      A+ L   + 
Sbjct: 263 DVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQ 322

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
             +V  + +T  ++IS +       +  ++F+ +  +     VVSWTS+I     +   +
Sbjct: 323 AEKVDFDYITMVSVISAY-------LAREVFERLPCR----SVVSWTSMIGACASHGHGE 371

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-----IHGCAIVMGVEGDLHV 387
           +A   F  M  +G  P S T +++  AC  +  +  G++     +   +I+ GVE   H 
Sbjct: 372 DALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVE---HC 428

Query: 388 RSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANH 429
            + +VD+  + G + EA    DKM  E +   W +++  C  H
Sbjct: 429 -ACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIH 470


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 167/504 (33%), Positives = 259/504 (51%), Gaps = 71/504 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H+ ++  GL+    +A  ++  Y +C +   AR +F+ +P+ ++  W A+    A 
Sbjct: 181 GRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAH 240

Query: 157 RGYHQEAVTVFHEMH----------IQGLKQN----------------------IFVIPS 184
            G    A+++F  M           I G  QN                       F I S
Sbjct: 241 LGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITS 300

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL AC +L  +  G+++H+ +L+        V ++LI MY+K GSVE A+ V  + V  D
Sbjct: 301 VLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMAD 360

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +                                 NV+++  L+ G+ K GD     ++F 
Sbjct: 361 L---------------------------------NVISFTALLEGYVKLGDMKHAREMFD 387

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           +M  +    DVV+WT++I G   N  NDEA + F+ M+  G  P S T++++L  CAS A
Sbjct: 388 VMSNR----DVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLA 443

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTWNSMI 423
            +  GK+IH  AI    E    V +++V MYA+ G +  AR +FD++  R  TVTW SMI
Sbjct: 444 CLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMI 503

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              A HG  ++A+ LF +M     K D ++F  VL+AC HVG V+ G+R F  +Q+K+ I
Sbjct: 504 VALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGI 563

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           +P   HYACMVDLL RAG  +EA E I+ M  EPD   WG+LL AC+ H N +LAE+AA+
Sbjct: 564 VPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAE 623

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L  ++P ++     L+++Y+  G
Sbjct: 624 KLLSIDPGNSGAYSALSNVYSACG 647



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 199/453 (43%), Gaps = 83/453 (18%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L++ Y +   +  AR +F E+P+ +   W  +     R G   EA+ +F +M   GL   
Sbjct: 102 LLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPT 161

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F + +VL +C      G G K+HS V+K    +   V +S+++MY KCG  E A+ VF+
Sbjct: 162 QFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFE 221

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M E+ + + NAMVS     G    AL+L E +        +V+WN +I+G++++G    
Sbjct: 222 RMPERSVSSWNAMVSLDAHLGRMDLALSLFENMP----DRTIVSWNAVIAGYNQNG---- 273

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSIL 357
                                           N +A   F  MLS     P   TI+S+L
Sbjct: 274 -------------------------------LNAKALWFFSRMLSYSTMAPDEFTITSVL 302

Query: 358 PACASAANMRRGKEIHGCAI-----------------------------VM--GVEGDLH 386
            ACA+   +  GK++H   +                             VM   V  DL+
Sbjct: 303 SACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLN 362

Query: 387 VRS--ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-E 443
           V S  AL++ Y K G +  AR +FD MS R+ V W +MI G   +G+ DEA+ELF  M  
Sbjct: 363 VISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIR 422

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRL----FNMMQEKYKIMPRTEHYACMVDLLGRA 499
              + +  +  AVL+ C  +  +E G+++       +QE+   +  +     +V +  R+
Sbjct: 423 SGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNS-----IVTMYARS 477

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           G L  A  +   +    +   W +++ A   HG
Sbjct: 478 GSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 75/326 (23%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV-----EKAKKVFDE 239
           +L+ C   ++ G G  IH+  +K      A++ ++L+  Y+   +       +A+++FDE
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           +                                 P  + NV TWN+L+S ++KSG     
Sbjct: 89  I---------------------------------PAAQRNVFTWNSLLSLYAKSGRLADA 115

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             +F  M     E D VSWT ++ GL       EA   F +M++ G  PT  T++++L +
Sbjct: 116 RAVFAEM----PERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSS 171

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA+      G+++H   + +G+   + V +++++MY KCG    AR +F++M ER+  +W
Sbjct: 172 CAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSW 231

Query: 420 NSMIFGCANHGYCDEAIELFNQMEER-------------------KKL------------ 448
           N+M+   A+ G  D A+ LF  M +R                   K L            
Sbjct: 232 NAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTM 291

Query: 449 --DHLSFTAVLTACCHVGLVELGQRL 472
             D  + T+VL+AC ++G+V +G+++
Sbjct: 292 APDEFTITSVLSACANLGMVSIGKQV 317



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 168/333 (50%), Gaps = 8/333 (2%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           I +Y +  ++++ + +  Q +++ L  ++   T L+  Y +  ++ HAR +FD +   ++
Sbjct: 337 ISMYAKSGSVENARGVMQQAVMADLNVIS--FTALLEGYVKLGDMKHAREMFDVMSNRDV 394

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W A+   Y + G++ EA+ +F  M   G + N + + +VL  C  L+ +  G++IH  
Sbjct: 395 VAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCK 454

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATE 263
            ++      + V +S++ MY++ GS+  A++VFD +   K+ V   +M+    Q GL  +
Sbjct: 455 AIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGED 514

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVI 322
           A+ L EE+    VKP+ +T+  ++S  +  G      + FQ ++ K G+ P++  +  ++
Sbjct: 515 AVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMV 574

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
             L       EA +  ++M  +   P +    S+L AC    N     E+    ++    
Sbjct: 575 DLLARAGLFSEAQEFIQQMPVE---PDAIAWGSLLSACRVHKNADLA-ELAAEKLLSIDP 630

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           G+    SAL ++Y+ CG  ++A  ++ +  +++
Sbjct: 631 GNSGAYSALSNVYSACGRWNDAAKIWKRRKDKS 663



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 117/245 (47%), Gaps = 8/245 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTG 152
           L+ GK +H + I S   + + ++  ++T Y    ++  AR +FD +  +     W ++  
Sbjct: 445 LEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIV 504

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
           A A+ G  ++AV +F EM   G+K +      VL AC H+  +  G++    L  KH   
Sbjct: 505 ALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIV 564

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +    + ++D+ ++ G   +A++   +M VE D +A  +++S       A  A    E+
Sbjct: 565 PEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEK 624

Query: 271 IGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHN 328
           + +  + P N   ++ L + +S  G     +K+++  + K V+ +   SWT  I   VH 
Sbjct: 625 LLS--IDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTH-IGNRVHV 681

Query: 329 FCNDE 333
           F  D+
Sbjct: 682 FGADD 686



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           ++L+ +YAK G +++AR +F +M ER+ V+W  M+ G    G   EAI++F  M  +   
Sbjct: 100 NSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLS 159

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
               + T VL++C       +G+++ + +  K  +         ++++ G+ G    A  
Sbjct: 160 PTQFTLTNVLSSCAATEARGVGRKVHSFVV-KLGLSSCVPVANSVLNMYGKCGDAETARA 218

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           + + M  E  +  W A++    + G ++LA
Sbjct: 219 VFERM-PERSVSSWNAMVSLDAHLGRMDLA 247


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/536 (31%), Positives = 271/536 (50%), Gaps = 64/536 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ-NIHHARMLFDEIPKTNIHRWIALTG 152
           +++ K LHA L+VSGL       +K+I  Y   Q ++  A  +F++I       W  L  
Sbjct: 324 MEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLR 383

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+    ++A+  + +   +G+K +    P VLKAC        GE++HS V+K  F  
Sbjct: 384 GLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLL 443

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV +SLI +Y+ CG +  A+ +FDEM+ KD+V+ N+++ GY QR    E L L E + 
Sbjct: 444 DIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQ 503

Query: 273 TPRVKPNVVT-------------W----------------------NTLISGFSKSGDQV 297
              V+ + VT             W                      NTLI  + + G   
Sbjct: 504 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQ 563

Query: 298 MVSKLFQLMRAKGV---------------------------EPDVVSWTSVISGLVHNFC 330
              K+F  M+ K                               D++SW+S+I        
Sbjct: 564 SAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 623

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             ++ + F++M      P +  I+S+L ACA    +  GK IH       ++ D  + ++
Sbjct: 624 FSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENS 683

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLD 449
           L+DM+AKCG + EA  +F +M E++T++WNS+I G AN+G+ DEA+ +F  M  E  + +
Sbjct: 684 LIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPN 743

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++F  VL AC +  LV+ G   F  M+  + + P+ +HY C+V +L RAG+L +A   I
Sbjct: 744 EVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFI 803

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             M   PD  VW  LLGACK HGN+ +AE+A K LSEL+P ++ + MLL+++YA+A
Sbjct: 804 NEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASA 859



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 169/290 (58%), Gaps = 6/290 (2%)

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           NVV+WN +I+GF+  G+      LF  M  +    +VVSWT +I G        EA   F
Sbjct: 5   NVVSWNVVITGFAGWGEIEYARLLFDQMPCR----NVVSWTGLIDGYTRACLYAEAVALF 60

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M++ G  P+  T+ +++PA ++   +  G+ +HG  +  G+  D  V ++L+D+YAK 
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120

Query: 399 GFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAV 456
           G +  +  +FD+M   RN V+W S+I G A HG   EA+ELF +M     + + ++F +V
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           + AC H GLVE G   F  M  +Y I P  +H+ C++D+LGRAGRL EA ++I+ +  E 
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEV 240

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++ VW  LLG C  +G +E+ + A K +S+LE ES  +  +L+++    G
Sbjct: 241 NVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELG 290



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 143/283 (50%), Gaps = 8/283 (2%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           I+ Y R   LQS + + +Q+       L      +I  Y +  N+  A+ +FD+IP  ++
Sbjct: 553 IDYYCRIGQLQSAEKVFSQMKDKNTVTLN----AMIHAYAKGGNLVSAKKIFDQIPNKDL 608

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W ++  AY++  +  +++ +F +M    +K +  VI SVL AC HL  +  G+ IH  
Sbjct: 609 ISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDY 668

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V +++  TD  + +SLIDM++KCG +++A +VF EM EKD ++ N+++ G    G   EA
Sbjct: 669 VRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEA 728

Query: 265 LNLVEEIGTPRVKPNVVTW-NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           LN+   + T   +PN VT+   LI+  +K   Q  +    ++     +EP +  +  V+ 
Sbjct: 729 LNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVG 788

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
            L      ++A +   EM      P       +L AC +  N+
Sbjct: 789 ILSRAGQLEKAKNFINEM---PLAPDPVVWRILLGACKTHGNV 828



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +IT +     I +AR+LFD++P  N+  W  L   Y R   + EAV +F  M   G+  +
Sbjct: 12  VITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPS 71

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              + +V+ A  +L  I  GE +H   +K    +DA V +SLID+Y+K GSV+ + KVFD
Sbjct: 72  EITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFD 131

Query: 239 EMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           EM++ +++V+  +++SG+   GL+ EAL L  E+    ++PN +T+ ++I+  S  G
Sbjct: 132 EMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGG 188



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/435 (20%), Positives = 184/435 (42%), Gaps = 44/435 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE-IPKTNIHRWIALTGAYA 155
           G++LH   +  G+    ++   LI  Y +  ++ ++  +FDE + + N+  W ++   +A
Sbjct: 91  GEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFA 150

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFGTDA 214
             G   EA+ +F EM   G++ N     SV+ AC H   +  G     S+V +++   + 
Sbjct: 151 MHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEI 210

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
                +IDM  + G + +A+++ +                                 G P
Sbjct: 211 KHFGCIIDMLGRAGRLCEAEQIIE---------------------------------GLP 237

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            V+ NV+ W  L+   SK G+  M  +  +++    +E +     +V+S +++       
Sbjct: 238 -VEVNVIVWRILLGCCSKYGEVEMGKRAIKMI--SDLERESGGDFAVLSNVLNELGRFSD 294

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
            +  +++L +        ++  L    S   M   K++H   +V G+    +  S ++  
Sbjct: 295 AEQARKLLDERKIVKVPGLA--LVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRS 352

Query: 395 YA-KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
           YA +   +  A  +F+++    T  WN+++ G A      +AI  + + +E+  K D+++
Sbjct: 353 YALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMT 412

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  VL AC      + G+++ + +  K   +        ++ L    G L  A  +   M
Sbjct: 413 FPFVLKACAKTYAPKEGEQMHSHVI-KLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEM 471

Query: 513 STEPDLFVWGALLGA 527
             + D+  W +L+G 
Sbjct: 472 LVK-DVVSWNSLIGG 485


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/408 (38%), Positives = 231/408 (56%), Gaps = 44/408 (10%)

Query: 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223
           +  +  MH  GL  + F +P VLK+C  LS +  G  +H   L+     D +V +SLIDM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 224 YSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
           Y KCG +  A+K+FD+M+ +D+                                    +W
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMA-----------------------------------SW 176

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           N LI+G+ K G+  +   LF+ M  +    ++VSWT++ISG   N   ++A   F EML 
Sbjct: 177 NALIAGYMKEGEIGVAEDLFERMEHR----NIVSWTAMISGYTQNGFAEQALGLFDEMLQ 232

Query: 344 QG--FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
            G    P   TI S+LPACA +A + RG+ IH  A  +G+  +  V++AL  MYAKC  +
Sbjct: 233 DGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSL 292

Query: 402 SEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLT 458
            EAR  FD +++  +N + WN+MI   A+HG   EA+ +F N +    + D ++F  +L+
Sbjct: 293 VEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLS 352

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
            C H GL++ G   FN M   + + PR EHYAC+VDLLGRAGRL EA E+I  M  +   
Sbjct: 353 GCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGP 412

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            VWGALL AC++H N+E+AE+AA+ L  LEP+++ N +LL++LYA AG
Sbjct: 413 SVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAG 460



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 137/309 (44%), Gaps = 45/309 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE------------------ 138
           G+ +H Q +  GL     +   LI  Y +C  I  AR LFD+                  
Sbjct: 126 GRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMK 185

Query: 139 -------------IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG--LKQNIFVIP 183
                        +   NI  W A+   Y + G+ ++A+ +F EM   G  +K N   I 
Sbjct: 186 EGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIV 245

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE- 242
           SVL AC   + +  G +IH          ++ V ++L  MY+KC S+ +A+  FD + + 
Sbjct: 246 SVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQN 305

Query: 243 -KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG-DQVMVS 300
            K+++A N M++ Y   G   EA+++ E +    V+P+ VT+  L+SG S SG     ++
Sbjct: 306 GKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLN 365

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS---SIL 357
               +     VEP V  +  V+  L       EA    KE++SQ   P  A  S   ++L
Sbjct: 366 HFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEA----KELISQ--MPMQAGPSVWGALL 419

Query: 358 PACASAANM 366
            AC S  N+
Sbjct: 420 AACRSHRNL 428



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 146/367 (39%), Gaps = 40/367 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT--NIHRWIAL 150
           AL+ G+ +H      GL   + + T L   Y +C ++  AR  FD I +   N+  W  +
Sbjct: 256 ALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTM 315

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHS 209
             AYA  G   EAV++F  M   G++ +      +L  C H   I  G    + +   HS
Sbjct: 316 ITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHS 375

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQR------GLAT 262
                   + ++D+  + G + +AK++  +M ++       A+++            LA 
Sbjct: 376 VEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAA 435

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
             L ++E    P    N V  + L   ++++G    V KL  L++ +G++     SW   
Sbjct: 436 RRLFVLE----PDNSGNYVLLSNL---YAEAGMWEEVKKLRALLKYQGMKKSPGCSWIE- 487

Query: 322 ISGLVHNFCN-DEAFDTFKEMLS-----------QGFCPTSATISSILPACASAANMRRG 369
           I+G  H F   D++    KE+              G+ P ++ +   +       N+   
Sbjct: 488 INGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTH 547

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAK----CGFISEARTLFDKMSERNTVTWNSMIFG 425
            E    AI  G+   L+ R  +V    K    CG    A     K+ ER  +  +   F 
Sbjct: 548 SE--KLAIAFGL---LNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFH 602

Query: 426 CANHGYC 432
           C   G C
Sbjct: 603 CFKDGSC 609


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/517 (33%), Positives = 268/517 (51%), Gaps = 48/517 (9%)

Query: 92  RALQSGKILHAQLI---VSGLARLTQIATKLITFYTECQNI--HHARMLFDEIPKTNIHR 146
           ++++  K +HA +I    S  A+LT I+T+L     +   I   +A  L  ++   N+  
Sbjct: 33  KSIKGLKQIHASIIKTMPSPDAQLT-ISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPL 91

Query: 147 WIALTGAYARRGYHQ-EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
           + A+    A       E + V+ +M  +G+  + + IP VLKAC     +  GE++H   
Sbjct: 92  YNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQA 151

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +K    +D +V ++L+ MY+ C  +  A+KVFD   ++D+V+   M+ GYV+ G A E +
Sbjct: 152 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 211

Query: 266 NLVEE------------------------------------IGTPRVKPNVVTWNTLISG 289
            L  E                                    I    V  +V   N L+  
Sbjct: 212 GLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDM 271

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           + K GD     K+FQ M  K    +VVSW S+ISGL       E+   F++M   G  P 
Sbjct: 272 YLKCGDANFARKVFQEMPVK----NVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPD 327

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
             T+ ++L +CA+   +  GK +H       +  D  + +ALVDMYAKCG I +A  +F 
Sbjct: 328 DVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQ 387

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVEL 468
            M+ ++  ++ +MI G A HG   +A++LF++M +   + D ++F  VLTAC HVGLVE 
Sbjct: 388 AMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEE 447

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G++ F  M   Y + P+ EHY CMVDLLGRAG + EA E I+ M  EPD FV GALLGAC
Sbjct: 448 GRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGAC 507

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           K HG +EL E   K + ++EP      +L++++Y++A
Sbjct: 508 KIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSA 544


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 249/470 (52%), Gaps = 40/470 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA L+ +     +   +++ +      +  +A+++F  +  + +  W     ++A  
Sbjct: 32  KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
               +A+++F+ +    +  + +    VLKAC  L D+  G+ +H  V K    ++ F+ 
Sbjct: 92  DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQ 151

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           + ++ +Y+ CG +  A+KVFD+M ++D                                 
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRD--------------------------------- 178

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             V+TWN +I+   K GD     KLF    A+  E +V SWTS+I G      + EA D 
Sbjct: 179 --VITWNIMIARLVKMGDAEGAYKLF----AEMPERNVRSWTSMIGGYAQCGKSKEAIDL 232

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F EM   G  P   T+ ++L ACA   N+  G+ IH  +   G E ++ V + L+DMY K
Sbjct: 233 FLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVK 292

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAV 456
           CG + +A  +FD M ER  V+W++MI G A HG  ++A+ LFN+M     K + ++F  +
Sbjct: 293 CGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGI 352

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L AC H+G+VE G++ F  M   Y I+PR EHY CMVDL  RAG L EA+E I  M   P
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAP 412

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +  VWGALLG CK H N++LAE A +HLS+L+P +    ++L+++YA AG
Sbjct: 413 NGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAG 462



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 200/478 (41%), Gaps = 52/478 (10%)

Query: 9   PIRDKPFQFTLSM---NDFYSIRRIYFALLSGTQLVL--SCSKSASDAGKPLINGIFIEA 63
           P+   P     S+   N  +S  ++ F LL  +++    +C +S ++   P      I  
Sbjct: 44  PLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSP---ADAISL 100

Query: 64  HYKMPIISRSFHLSPAAYSERIEIYIRDRAL--QSGKILHAQLIVSGLARLTQIATKLIT 121
            Y++    R F +SP  Y+    +    R L  ++GKI+H  +   GL     +   ++ 
Sbjct: 101 FYRL----REFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVH 156

Query: 122 FYTECQNIHHARMLFD-------------------------------EIPKTNIHRWIAL 150
            Y  C  I  AR +FD                               E+P+ N+  W ++
Sbjct: 157 LYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSM 216

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
            G YA+ G  +EA+ +F EM   GL  N   + +VL AC  + ++  G +IH    +  +
Sbjct: 217 IGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGY 276

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +  V ++LIDMY KCG +E A ++FD M E+ +V+ +AM++G    G A +AL L  +
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNF 329
           +    VKPN VT+  ++   S  G      K F  M R  G+ P +  +  ++       
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAG 396

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
              EA +    M      P      ++L  C    N++  +E       +    D +   
Sbjct: 397 LLQEAHEFIMNM---PIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYY-V 452

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            L ++YA+ G   +   +   M +R   TW  ++      GY      +   MEE +K
Sbjct: 453 VLSNIYAEAGRWEDVARVRKLMRDRG--TWEKLLQRMKLKGYVPNTSVVLLDMEEDQK 508


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/440 (35%), Positives = 247/440 (56%), Gaps = 9/440 (2%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           ++  AR +FD +P+ ++  W ++   Y +RG   + + +F  M  +G++ N   +  VL 
Sbjct: 210 SVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLD 269

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC   S    G +IH+L++   F  D F+  S+I MYS+ G +  A++ F+ M +KDIV+
Sbjct: 270 ACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDIVS 329

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            N++++GYVQ  +  EA  L + +     + + V+W +++ GF+  G      +LF+ M 
Sbjct: 330 WNSLITGYVQHDMVEEAHVLFKLMP----QKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            K    DVV+WT++IS  + N     A   F  M  +G  P + T S +L A AS A + 
Sbjct: 386 VK----DVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLN 441

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +G++ H  +I MG   D  V ++L+ MYAKCG ++EA  +F  +S  + +  NSMI    
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLISMYAKCGRLAEAHHVFSSISNPSLIAINSMITAFV 501

Query: 428 NHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG+ ++A++LF +M+    K +H++F  +LT C   G V+ G   F  M+  Y + P  
Sbjct: 502 QHGFAEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           EHY CMVDLLGRAG LAEA EMI +M        W ALL A   H N+  A+IAA+ L E
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLE 621

Query: 547 LEPESAANNMLLTDLYANAG 566
            +P  A    +L+ ++++AG
Sbjct: 622 KDPYDATAYTVLSKMFSSAG 641



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 182/363 (50%), Gaps = 21/363 (5%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+T Y     +  A++LFD++P  ++  W AL  AYA  G    A  VF +M  +     
Sbjct: 44  LLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             ++   L+A    +      K+ +         +A    ++I   +K G + +A+ V++
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPA--------KNAVSYGAIISGLAKAGMLREAELVYE 155

Query: 239 EMVE--KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           EM +  +D V  NA+++GY++ G    AL + E + T R   +V++W+ ++ G  K G  
Sbjct: 156 EMPQQWRDPVGSNALMAGYLRVGELAMALRVFEGM-TVR---DVISWSAMVDGLCKHGSV 211

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F  M     E  VVSWTS+I G V      +    F  M  +G    + T+S +
Sbjct: 212 SEARRVFDAMP----ERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVV 267

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA A+  R G +IH   I MG E D+ +  +++ MY++ G++++A+  F+ M +++ 
Sbjct: 268 LDACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDI 327

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           V+WNS+I G   H   +EA  LF  M ++   D +S+T+++    + G +     LF  M
Sbjct: 328 VSWNSLITGYVQHDMVEEAHVLFKLMPQK---DAVSWTSMVVGFANRGWMRESVELFEQM 384

Query: 477 QEK 479
             K
Sbjct: 385 PVK 387



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 155/335 (46%), Gaps = 25/335 (7%)

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L+  Y + G +  A+ +FD+M  +D+++  A+++ Y   G    A  + +++  PR 
Sbjct: 41  LNALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDM--PRR 98

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             N  +WN L+S + ++        LF  M AK    + VS+ ++ISGL       EA  
Sbjct: 99  --NAPSWNALLSVYLRAARPRAAHALFYKMPAK----NAVSYGAIISGLAKAGMLREAEL 152

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMY 395
            ++EM  Q   P  +           A  +R G+      +  G+   D+   SA+VD  
Sbjct: 153 VYEEMPQQWRDPVGSN-------ALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFT 454
            K G +SEAR +FD M ER+ V+W SMI G    G C + + LF N   E  +++  + +
Sbjct: 206 CKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLS 265

Query: 455 AVLTACCHVGLVELGQRLFNM---MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
            VL AC    L   G ++ N+   M  +  I         ++ +  R G +A+A      
Sbjct: 266 VVLDACAGASLAREGIQIHNLIISMGFELDIFLGDS----VIIMYSRFGWMADAQRAFNC 321

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           M  + D+  W +L+     H  +E A +  K + +
Sbjct: 322 MQ-QKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQ 355


>gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa]
 gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/511 (33%), Positives = 261/511 (51%), Gaps = 43/511 (8%)

Query: 86  EIYIRDRALQSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           E  + D   + G+ +H   I +GL      +   LI  Y +C +I HAR +F  +   + 
Sbjct: 263 EFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDS 322

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W ++     +    ++AV  ++ M   GL  + F + S L +C  L  I  G++ H  
Sbjct: 323 VSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCASLGCILLGQQTHGE 382

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA-TE 263
            +K     D  V ++L+ +Y++ G + + +KVF  M+E+D V+ N ++      G + +E
Sbjct: 383 GIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWMLERDQVSWNTVIGALADSGASVSE 442

Query: 264 ALNLVEEIGTPRVKPNVVTW-----------------------------------NTLIS 288
           A+ +  E+      PN VT+                                   N L++
Sbjct: 443 AIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLA 502

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
            + KSG+     ++F  M  +    D VSW S+ISG +HN    +A D    M+ +G   
Sbjct: 503 CYGKSGEMENCEEIFSRMSER---RDEVSWNSMISGYIHNDLLCKAMDLVWLMMQRGQRL 559

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              T +++L ACA+ A + RG E+H CAI   +E D+ + SALVDMY+KCG I  A   F
Sbjct: 560 DCFTFATVLSACATVATLERGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFF 619

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVE 467
           + M  RN  +WNSMI G A HGY D A+ LF +M+   +L DH++F  VL+AC H+GLV+
Sbjct: 620 NLMPMRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVD 679

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            G   F  M E Y ++PR EHY+CMVDLLGRAG L +    I  M  +P++ +W  +LGA
Sbjct: 680 EGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIDNFINKMPIKPNILIWRTVLGA 739

Query: 528 C--KNHGNIELAEIAAKHLSELEPESAANNM 556
           C   N    EL   AA+ L  ++P++A  N+
Sbjct: 740 CCRGNGRKTELGRRAAEMLFNMDPQNAVMNI 770



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 206/446 (46%), Gaps = 61/446 (13%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LSDIG 196
           +P  N   W  L   Y + G   +A  V  EM  +G   N F   S ++AC    L  + 
Sbjct: 1   MPDRNGVTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQ 60

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSK-CGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
            G +IH L+LK  +  DA + + LI MY K  G ++ A+ VFDE+  ++ +  N++VS Y
Sbjct: 61  LGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVY 120

Query: 256 VQRGLATEALNLVEEIGTP----RVKPNVVTWNTLIS----------------------- 288
            QRG A     L   +        +KPN  T+ +LI+                       
Sbjct: 121 SQRGDAASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSSVDSGLSLLGQILARIKKS 180

Query: 289 --------------GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                         GFS+ G      K+F+ M A+    + VS   ++ GLV   C +EA
Sbjct: 181 GLLANLYVGSALAGGFSRLGSFDYARKIFEQMTAR----NAVSMNGLMVGLVRQKCGEEA 236

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANM----RRGKEIHGCAIVMGV-EGDLHVRS 389
            + FKE          + +  +L ACA  A +    R+G+E+HG AI  G+ +  + V +
Sbjct: 237 VEVFKETRHLVDINVDSYV-ILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGN 295

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL- 448
            L++MYAKCG I  AR++F  M ++++V+WNSMI G   +   ++A++ +N M +   + 
Sbjct: 296 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 355

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAY 506
            + +  + L++C  +G + LGQ+      E  K+    +      ++ L    G LAE  
Sbjct: 356 SNFTLISALSSCASLGCILLGQQTHG---EGIKLGLDMDVSVSNTLLALYAETGHLAECQ 412

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHG 532
           ++   M  E D   W  ++GA  + G
Sbjct: 413 KVFSWM-LERDQVSWNTVIGALADSG 437



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 219/481 (45%), Gaps = 53/481 (11%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN-IHHARMLFDEIPKTNIHRWIALT 151
            LQ G  +H  ++ S  A    +   LI+ Y +    I +AR +FDEI   N   W ++ 
Sbjct: 58  GLQLGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIV 117

Query: 152 GAYARRGYHQEAVTVFHEMHIQ----GLKQNIFVIPSVLKACGHLSDIGTG--EKIHSLV 205
             Y++RG       +F  M +      LK N +   S++ A     D G     +I + +
Sbjct: 118 SVYSQRGDAASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSSVDSGLSLLGQILARI 177

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            K     + +V S+L   +S+ GS + A+K+F++M  ++ V+MN ++ G V++    EA+
Sbjct: 178 KKSGLLANLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAV 237

Query: 266 NLVEE---------------------------------------IGTPRVKPNVVTWNTL 286
            + +E                                       I T      V   N L
Sbjct: 238 EVFKETRHLVDINVDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGL 297

Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           I+ ++K GD      +F LM    V+ D VSW S+I+GL  N C ++A  ++  M   G 
Sbjct: 298 INMYAKCGDIDHARSVFGLM----VDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGL 353

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P++ T+ S L +CAS   +  G++ HG  I +G++ D+ V + L+ +YA+ G ++E + 
Sbjct: 354 MPSNFTLISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQK 413

Query: 407 LFDKMSERNTVTWNSMIFGCANHG-YCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVG 464
           +F  M ER+ V+WN++I   A+ G    EAIE+F   M      + ++F  +L     + 
Sbjct: 414 VFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLS 473

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
             +L  ++  ++  KY +         ++   G++G +    E+   MS   D   W ++
Sbjct: 474 TSKLSHQIHALIL-KYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSM 532

Query: 525 L 525
           +
Sbjct: 533 I 533



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 15/249 (6%)

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA--ANMRRGKEIH 373
           V+W  +ISG   N   D+A    KEM+ +GF P      S + AC  +    ++ G +IH
Sbjct: 7   VTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQLGMQIH 66

Query: 374 GCAIVMGVEGDLHVRSALVDMYAK-CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           G  +      D  + + L+ MY K  G+I  AR++FD++  RN++ WNS++   +  G  
Sbjct: 67  GLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVYSQRGDA 126

Query: 433 DEAIELFNQMEERK-----KLDHLSFTAVLTACC---HVGLVELGQRLFNMMQEKYKIMP 484
               ELF+ M+        K +  +F +++TA C     GL  LGQ L  +  +K  ++ 
Sbjct: 127 ASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSSVDSGLSLLGQILARI--KKSGLLA 184

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI--AAK 542
                + +     R G    A ++ + M+    + + G ++G  +     E  E+    +
Sbjct: 185 NLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKETR 244

Query: 543 HLSELEPES 551
           HL ++  +S
Sbjct: 245 HLVDINVDS 253


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 247/476 (51%), Gaps = 77/476 (16%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA +++ GL     + +K++ FY    +I  +  +F+ I            G 
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGI------------GD 133

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y                         F  P VLK+   L  +  G+ +H L+L+     D
Sbjct: 134 Y-------------------------FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 168

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V +SLI +Y KCG +  A KVFD M  +D+ + NA+++GY + G    AL + E +  
Sbjct: 169 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPW 228

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                N+V+W T+ISG+S+SG       LF  M    V+ D                   
Sbjct: 229 ----RNIVSWTTMISGYSQSGLAQQALSLFDEM----VKED------------------- 261

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
                      G  P   TI S+LPACA  + + RG++IH  A  MG+  +  V  AL  
Sbjct: 262 ----------SGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTA 311

Query: 394 MYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           MYAKCG + +AR  FDK+  +E+N + WN+MI   A++G+  +A+  F +M +   + D 
Sbjct: 312 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 371

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT +L+ C H GLV++G + FN M   Y I PR EHYAC+ DLLGRAGRLAEA +++ 
Sbjct: 372 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 431

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M       +WG+LL AC+ H N+E+AE AA+ L  LEPE+  N +LL+++YA AG
Sbjct: 432 EMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAG 487


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/542 (31%), Positives = 282/542 (52%), Gaps = 44/542 (8%)

Query: 67  MPIISRSFHLSPAAY----SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITF 122
           MPI +++    P       S  ++I  +   L  GK LHA LI  G  ++  +  ++++ 
Sbjct: 45  MPIPNQTHFNDPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSV 104

Query: 123 YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA------VTVFHEMHIQGLK 176
           Y +CQ    A+ LF+E+P  N+  W  +  A   R    E+       + F  M ++ + 
Sbjct: 105 YLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEMMV 164

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            +      ++  C   +DI  G ++H   +K  F  D FV  +L+ +Y+KCG VE A++V
Sbjct: 165 PDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRV 224

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS--- 293
           F ++  +D+V  N MVS YV   L  EA  +   +    V  +  T+++L+S  S     
Sbjct: 225 FCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALE 284

Query: 294 ----GDQV---------------------MVSKLFQLMRAKGVEPD-----VVSWTSVIS 323
               G QV                     M +K   ++ A+ V  +     VV+W ++I 
Sbjct: 285 YYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIV 344

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G  ++   +E     KEML +GF P   TISSI+ +C  A+ +    ++H  A+ +  + 
Sbjct: 345 GFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQD 404

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
            L V ++L+  Y+KCG I+ A   F+  S+ + VTW S+I+  A HG  +++ E+F +M 
Sbjct: 405 FLSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKML 464

Query: 444 ERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
               K D ++F  VL+AC H GLV  G   F +M   Y+I+P +EHY C+VDLLGR G +
Sbjct: 465 SYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLI 524

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            EA+E++++M  E D    GA +G+CK H N+ELA++AA+ L  +EPE + N  ++++++
Sbjct: 525 NEAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIF 584

Query: 563 AN 564
           A+
Sbjct: 585 AS 586


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 256/476 (53%), Gaps = 47/476 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIH---HARMLFDEIPKTNIHRWIALTGAY 154
           K +HA+++++GL +   +  KLI   T+  NI    +   +F+++   N   + AL   Y
Sbjct: 63  KQVHARILLNGLDQSCYVLAKLIRTLTKL-NIPVDPYPLSIFNQVNYPNPFLYNALIRGY 121

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFGTD 213
                 +E+   +  M  +G+    F   ++ KACG   D+G G +IH   +L   FG D
Sbjct: 122 LIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGED 181

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +S+IDMY KCG +E  +KVFDEM  +D                             
Sbjct: 182 LHVGNSMIDMYIKCGFLECGRKVFDEMPNRD----------------------------- 212

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                 V++W  LIS + KSG+     +LF  +  K    D+V+WT ++SG   N    E
Sbjct: 213 ------VISWTELISAYVKSGNMESAGELFDGLPVK----DMVAWTVMVSGFAQNAKPRE 262

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA--IVMGVEGDLHVRSAL 391
           A   F++M   G      T+  ++ ACA     +    I   A     G +  + V SAL
Sbjct: 263 AIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSAL 322

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           +DMY+KCG + +A  +F  M ERN  +++SMI G A HG   +A++LF++M + + K + 
Sbjct: 323 IDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNR 382

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F  VLTAC H G+VE G ++F +M++ Y I P  +HY CMVDLLGRAGRL EA+E++K
Sbjct: 383 VTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVK 442

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           TM  EP   VWGALLGAC+ H + ++A IAA HL ELEP    N +LL ++YA+ G
Sbjct: 443 TMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCG 498



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 160/337 (47%), Gaps = 17/337 (5%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           I++YI+   L+ G+ +  ++    +   T+    LI+ Y +  N+  A  LFD +P  ++
Sbjct: 189 IDMYIKCGFLECGRKVFDEMPNRDVISWTE----LISAYVKSGNMESAGELFDGLPVKDM 244

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W  +   +A+    +EA+  F +M   G++ +   +  V+ AC  L      + I  +
Sbjct: 245 VAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDV 304

Query: 205 VLKHSFGTDAFVV--SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
             K  FG    VV  S+LIDMYSKCGSV  A +VF  M E+++ + ++M+ G+   G   
Sbjct: 305 AEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVH 364

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSV 321
           +A+ L +E+    +KPN VT+  +++  S +G      ++F+LM +  G++P    +T +
Sbjct: 365 DAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCM 424

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           +  L       EA +  K M  +   P      ++L AC     + +  +I   A     
Sbjct: 425 VDLLGRAGRLQEAHELVKTMPIE---PHGGVWGALLGAC----RIHKSPDIAAIAANHLF 477

Query: 382 EGDLHVRSA---LVDMYAKCGFISEARTLFDKMSERN 415
           E + +       L ++YA CG  ++  T+   M  R 
Sbjct: 478 ELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRG 514


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 163/493 (33%), Positives = 276/493 (55%), Gaps = 21/493 (4%)

Query: 84  RIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI----HHARMLFDEI 139
           R +++   + +++ K +HA ++V+GL     +  +LI  Y+   ++     +A  LFDEI
Sbjct: 15  RPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELI--YSASLSVPGALKYAHKLFDEI 72

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           PK ++     +    A+    ++ V+++ EM  +G+  + +    VLKAC  L     G 
Sbjct: 73  PKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGF 132

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
             H  V++H F  + +V ++LI  ++ CG +  A ++FD+  +   VA ++M SGY +RG
Sbjct: 133 AFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRG 192

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
              EA+ L +E+       + V WN +I+G  K  +     +LF     +  E DVV+W 
Sbjct: 193 KIDEAMRLFDEMPYK----DQVAWNVMITGCLKCKEMDSARELFD----RFTEKDVVTWN 244

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH-----G 374
           ++ISG V+     EA   FKEM   G  P   TI S+L ACA   ++  GK +H      
Sbjct: 245 AMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILET 304

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
            ++   +     + +AL+DMYAKCG I  A  +F  + +R+  TWN++I G A H + + 
Sbjct: 305 ASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEG 363

Query: 435 AIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           +IE+F +M+  K   + ++F  V+ AC H G V+ G++ F++M++ Y I P  +HY CMV
Sbjct: 364 SIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMV 423

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           D+LGRAG+L EA+  +++M  EP+  VW  LLGACK +GN+EL + A + L  +  + + 
Sbjct: 424 DMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESG 483

Query: 554 NNMLLTDLYANAG 566
           + +LL+++YA+ G
Sbjct: 484 DYVLLSNIYASTG 496


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/517 (30%), Positives = 269/517 (52%), Gaps = 42/517 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ--NIHHARMLFDEIPKTNIHRWIA 149
           ++++  K LH  ++ +   +     +KLI F  + +  +I++A ++  +I   +++ W +
Sbjct: 15  KSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQIHNPSVYIWNS 74

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   +      + ++ ++ +M   G   + F  P VLKAC  ++D   G+ IHS ++K  
Sbjct: 75  MIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSG 134

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F  DA+  + L+ MY  C  ++   KVFD + + ++VA   +++GYV+     EAL + E
Sbjct: 135 FEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFE 194

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP---------------- 313
           ++    V+PN +T    +   + S D      + Q +R  G +P                
Sbjct: 195 DMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAIL 254

Query: 314 ----------------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
                                 ++VSW S+I+       + EA D F +M + G  P  A
Sbjct: 255 EMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKA 314

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T  S+L  CA    +  G+ +H   +  G+  D+ + +AL+DMYAK G +  A+ +F  +
Sbjct: 315 TFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSL 374

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELG 469
            +++ V W SMI G A HG+ +EA+ +F  M+E   L  DH+++  VL AC HVGLVE  
Sbjct: 375 QKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEA 434

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
           ++ F +M E Y ++P  EHY CMVDLL RAG   EA  +++TM+ +P++ +WGALL  C+
Sbjct: 435 KKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGALLNGCQ 494

Query: 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            H N+ +A      L ELEP  +  ++LL+++YA AG
Sbjct: 495 IHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAG 531



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 164/394 (41%), Gaps = 82/394 (20%)

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVE----KDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           ++++ + +KC S+ + KK+   +V     K I+ ++ ++   V        +N  + +  
Sbjct: 5   NTILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGD--INYADLVLR 62

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI----------- 322
               P+V  WN++I GF  S +  M   L++ M   G  PD  ++  V+           
Sbjct: 63  QIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDC 122

Query: 323 --------------------SGLVHNF--CND-----EAFDT------------------ 337
                               +GL+H +  C D     + FD                   
Sbjct: 123 GKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVK 182

Query: 338 ----------FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE----- 382
                     F++M      P   T+ + L ACA + ++  G+ +H      G +     
Sbjct: 183 NNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMST 242

Query: 383 --GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
              ++ + +A+++MYAKCG +  AR LF+KM +RN V+WNSMI     +    EA++LF 
Sbjct: 243 SNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFF 302

Query: 441 QMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
            M       D  +F +VL+ C H   + LGQ +   +  K  I         ++D+  + 
Sbjct: 303 DMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLL-KTGIATDISLATALLDMYAKT 361

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           G L  A ++  ++  + D+ +W +++     HG+
Sbjct: 362 GELGNAQKIFSSLQKK-DVVMWTSMINGLAMHGH 394


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 168/451 (37%), Positives = 254/451 (56%), Gaps = 21/451 (4%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+  Y     I  AR LFD +P+ N+  W  +   Y      +EA  +F EM I+     
Sbjct: 241 LLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISW 300

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             +I  + +A       G  ++   L+ K SF   A   ++L+  Y +    + A+++FD
Sbjct: 301 TTIISGLARA-------GKLQEAKDLLDKMSFNCVA-AKTALMHGYLQRNMADDARRIFD 352

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQ 296
            M   D V  N M+SGYVQ G+  EA+ L + +      PN  +V+WNT+I+G+++ G  
Sbjct: 353 GMEVHDTVCWNTMISGYVQCGILEEAMLLFQRM------PNKDMVSWNTMIAGYAQDGQM 406

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                +F+ M  +    + VSW SVISG V N    +A   F  M         +T +S 
Sbjct: 407 HKAIGIFRRMNRR----NTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASC 462

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+ A +  G+++H   +  G   D    +AL+  YAKCG I EA+ +FD+M  ++ 
Sbjct: 463 LRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDI 522

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN++I G A++G   EAI +F +ME    + D ++F  +L+AC H GL++ G   F  
Sbjct: 523 VSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYS 582

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M ++Y + P  EHYACMVDLLGRAG+L EA+E+++ M  +P+  VWGALLGAC  H N E
Sbjct: 583 MTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKNHE 642

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           LA++AA+ LSELEP  A+N +LL+++ A AG
Sbjct: 643 LAQLAAERLSELEPRKASNYVLLSNISAEAG 673



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 121/532 (22%), Positives = 213/532 (40%), Gaps = 131/532 (24%)

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
           + K +T       +  AR LFD +P  N   + A+  A AR G   EA  +F  M     
Sbjct: 21  SNKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMP---- 76

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
            +N     +++ A   LSD G      SL  +     D F  + ++  Y++ G +E A+ 
Sbjct: 77  GRNTVSWNAMIAA---LSDHGRVADARSLFDRMPV-RDEFSWTVMVSCYARGGDLELARD 132

Query: 236 VFDEMV-EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           V D M  +K     NAM+SGY + G   +A+ L+ E+      P++V+WN+ ++G ++SG
Sbjct: 133 VLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPA----PDLVSWNSALAGLTQSG 188

Query: 295 DQVMVSKLFQLMR--------------------------AKGVEPDVVSWTSVISGLVHN 328
           + V   + F  M                           AK   P+V+SW ++++G    
Sbjct: 189 EMVRAVQFFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRA 248

Query: 329 FCNDEAFDTFKEM----------LSQGFC---------------PTSATIS--SILPACA 361
               +A D F  M          +  G+                P   +IS  +I+   A
Sbjct: 249 GRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLA 308

Query: 362 SAANMRRGKEI----------------HGC----------AIVMGVE-GDLHVRSALVDM 394
            A  ++  K++                HG            I  G+E  D    + ++  
Sbjct: 309 RAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISG 368

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER--------- 445
           Y +CG + EA  LF +M  ++ V+WN+MI G A  G   +AI +F +M  R         
Sbjct: 369 YVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVI 428

Query: 446 -----------------------KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
                                   + D  ++ + L AC ++ ++ +G++L N++     I
Sbjct: 429 SGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHI 488

Query: 483 MPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
               + +A   ++    + GR+ EA ++   M  + D+  W AL+    ++G
Sbjct: 489 ---NDSFAGNALISTYAKCGRILEAKQIFDEMVYK-DIVSWNALIDGYASNG 536



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 8/146 (5%)

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           +A++   A+ G I EAR LFD M  RNTV+WN+MI   ++HG   +A  LF++M  R   
Sbjct: 53  NAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVR--- 109

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D  S+T +++     G +EL + + + M         T  Y  M+    + GR  +A ++
Sbjct: 110 DEFSWTVMVSCYARGGDLELARDVLDRMPGD----KCTACYNAMISGYAKNGRFDDAMKL 165

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNI 534
           ++ M   PDL  W + L      G +
Sbjct: 166 LREMPA-PDLVSWNSALAGLTQSGEM 190



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ LH  L+ SG    +     LI+ Y +C  I  A+ +FDE+   +I  W AL   
Sbjct: 472 LHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDG 531

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSFGT 212
           YA  G   EA+ VF EM   G++ +      +L AC H   I  G    +S+  ++    
Sbjct: 532 YASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKP 591

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
            A   + ++D+  + G + +A     E+V+   +  NA V G
Sbjct: 592 VAEHYACMVDLLGRAGKLNEAF----ELVQGMQIQPNAGVWG 629


>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 602

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 160/446 (35%), Positives = 247/446 (55%), Gaps = 34/446 (7%)

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A+    +EA+  F  M+  G K   F++ + L +C  L + G G +IH+ +++  F  + 
Sbjct: 77  AKHANVREALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNL 136

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           F+ S+L+D+Y+KC ++  AK+VFD M + D V+  +++SG+ + G   EA+   +E+   
Sbjct: 137 FLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGS 196

Query: 275 RVKPNVVTWNTLIS---GFSKSGDQV-----------------MVSKLFQ---------- 304
           ++KPN VT+ ++IS   G     DQ                  +VS L            
Sbjct: 197 QIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQ 256

Query: 305 --LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
             L+    +E D + + S+ISG   N   +EA   F EM + G  PT  T++SIL AC S
Sbjct: 257 AVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGS 316

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +++G+++H     MG E ++ V SAL+DMY+KCG I EAR +FD+  E+NTV W SM
Sbjct: 317 LTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSM 376

Query: 423 IFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           I G A  G   E + LF ++  EE    DH+ FTAVLTAC H G ++ G   FN M+  Y
Sbjct: 377 ITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDY 436

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            ++P  + YAC+VDL  R G L +A E+++ +  EP+  +WG+ L +CK +G  EL   A
Sbjct: 437 GLVPDLDQYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREA 496

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A  L ++EP S A  + +  +YA AG
Sbjct: 497 ADKLFKMEPCSTAPYVAMASIYAQAG 522



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 193/418 (46%), Gaps = 35/418 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +HA++I +G      + + L+  Y +C  I  A+ +FD + K +   W ++   +++
Sbjct: 120 GVQIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSK 179

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI-GTGEKIHSLVLKHSFGTDAF 215
            G  +EA+  F EM    +K N     SV+ AC  L  I      +H+ V+K  FG   F
Sbjct: 180 NGRGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTF 239

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           VVS LID YSKCG +++A  +F   +E+D +  N+M+SGY Q     EAL L  E+    
Sbjct: 240 VVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNG 299

Query: 276 VKPNVVTWNTLISGFS-----KSGDQV--------------MVSKLFQLMRAKG------ 310
           + P   T  ++++        + G QV              +VS L  +    G      
Sbjct: 300 LNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEAR 359

Query: 311 ------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPACASA 363
                 VE + V WTS+I+G   +    E    F+ +++ +GF P     +++L AC  A
Sbjct: 360 CVFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHA 419

Query: 364 ANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNS 421
             + +G +  +      G+  DL   + LVD+Y + G + +A+ L + +  E N+V W S
Sbjct: 420 GFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGS 479

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
            +  C  +G  +   E  +++ + +      + A+ +     GL      +  +M++K
Sbjct: 480 FLSSCKLYGEAELGREAADKLFKMEPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQK 537



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 165/336 (49%), Gaps = 27/336 (8%)

Query: 99  ILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           +LHA ++  G    T + + LI  Y++C  I  A +LF    + +   + ++   Y++  
Sbjct: 224 LLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNL 283

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
           + +EA+ +F EM   GL      + S+L ACG L+ +  G ++HSLV K    ++ FVVS
Sbjct: 284 FGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVS 343

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR-VK 277
           +L+DMYSKCGS+++A+ VFD+ VEK+ V   +M++GY Q G   E L L E + T     
Sbjct: 344 ALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFT 403

Query: 278 PNVVTWNTLISGFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
           P+ + +  +++  + +G  D+  +    Q+ R  G+ PD+  +  ++   V N    +A 
Sbjct: 404 PDHICFTAVLTACNHAGFLDK-GIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKA- 461

Query: 336 DTFKEMLSQGFC-PTSATISSILPACASAANMRRGKE-------IHGCAIVMGVEGDLHV 387
              KE++    C P S    S L +C        G+E       +  C+    V      
Sbjct: 462 ---KELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREAADKLFKMEPCSTAPYV------ 512

Query: 388 RSALVDMYAKCGFISEA---RTLFDKMSERNTVTWN 420
             A+  +YA+ G  SE    R L  +   R +  W+
Sbjct: 513 --AMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWS 546



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 108/235 (45%), Gaps = 11/235 (4%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G+ +H+ +   G      + + L+  Y++C +I  AR +FD+  + N   W ++   
Sbjct: 320 LQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITG 379

Query: 154 YARRGYHQEAVTVFHEMHI-QGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
           YA+ G   E + +F  +   +G   +     +VL AC H   +  G +  + +   +   
Sbjct: 380 YAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLV 439

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
            D    + L+D+Y + G + KAK++ + +  E + V   + +S    Y +  L  EA + 
Sbjct: 440 PDLDQYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREAADK 499

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           + ++      P V     + S ++++G    V ++ +LM+ KG+      SW  V
Sbjct: 500 LFKMEPCSTAPYV----AMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEV 550


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 173/504 (34%), Positives = 268/504 (53%), Gaps = 34/504 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +H Q    G    T +   L+  Y        A+++FD + +  +  W  +   Y R
Sbjct: 132 GVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFR 191

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               ++AV V+  M   G++ +   + SVL ACG L ++  G ++H+LV +  F  +  V
Sbjct: 192 NNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVV 251

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY KCG +++A  +   M +KD+V    +++GY+  G A  AL L   +    V
Sbjct: 252 RNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGV 311

Query: 277 KPNVVTWNTLISGFS------------------KSGDQVMVSKLFQLMRAK--------- 309
           KPN V+  +L+S                     K   +V+V      M AK         
Sbjct: 312 KPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYK 371

Query: 310 ----GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 +     W +++SG + N    EA + FK+ML +   P  AT +S+LPA A  A+
Sbjct: 372 VFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILAD 431

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS--ERNTVTWNSMI 423
           +++   IH   I  G    L V S LVD+Y+KCG +  A  +F+ +S  +++ + W+++I
Sbjct: 432 LQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAII 491

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
                HG+   A++LFNQM +   K +H++FT+VL AC H GLV  G  LFN M ++++I
Sbjct: 492 AAYGKHGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQI 551

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           +   +HY CM+DLLGRAGRL +AY +I+TM   P+  VWGALLGAC  H N+EL E+AA+
Sbjct: 552 ISHVDHYTCMIDLLGRAGRLNDAYNLIRTMPITPNHAVWGALLGACVIHENVELGEVAAR 611

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
              +LEPE+  N +LL  LYA  G
Sbjct: 612 WTFKLEPENTGNYVLLAKLYAAVG 635



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 224/455 (49%), Gaps = 46/455 (10%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA ++  G+   + + +KL T Y +C +  +A  LFD++ +  +  W A+   Y + 
Sbjct: 31  KRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQI 90

Query: 158 GYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           G   +A+ +F EM   G    + F  P V+KACG LS I  G  IH    K  + +D FV
Sbjct: 91  GRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFV 150

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+ MY   G  E A+ VFD M E+ +++ N M++GY +   A +A+N+   +    V
Sbjct: 151 QNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGV 210

Query: 277 KP-----------------------------------NVVTWNTLISGFSKSGDQVMVSK 301
           +P                                   N+V  N L+  + K G Q+  + 
Sbjct: 211 EPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCG-QMKEAW 269

Query: 302 LFQLMRAKGV-EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           L     AKG+ + DVV+WT++I+G + N     A      M  +G  P S +I+S+L AC
Sbjct: 270 LL----AKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSAC 325

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            S   +  GK +H  AI   +E ++ V +AL++MYAKC   + +  +F   S++ T  WN
Sbjct: 326 GSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWN 385

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL-FNMMQE 478
           +++ G   +    EAIELF QM  +  + DH +F ++L A  +  L +L Q +  +    
Sbjct: 386 ALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPA--YAILADLQQAMNIHCYLI 443

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
           +   + R E  + +VD+  + G L  A+++   +S
Sbjct: 444 RSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIIS 478



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 135/283 (47%), Gaps = 12/283 (4%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK LHA  I   +     + T LI  Y +C   + +  +F    K     W AL   
Sbjct: 331 LNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSG 390

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + +    +EA+ +F +M ++ ++ +     S+L A   L+D+     IH  +++  F   
Sbjct: 391 FIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYR 450

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFD--EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             V S L+D+YSKCGS+  A ++F+   + +KDI+  +A+++ Y + G    A+ L  ++
Sbjct: 451 LEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQM 510

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS----WTSVISGLVH 327
               VKPN VT+ +++   S +G   +V++ F L      +  ++S    +T +I  L  
Sbjct: 511 VQSGVKPNHVTFTSVLHACSHAG---LVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGR 567

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
               ++A++  + M      P  A   ++L AC    N+  G+
Sbjct: 568 AGRLNDAYNLIRTM---PITPNHAVWGALLGACVIHENVELGE 607



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
           F  T+A   S+L   +++ +    K +H   + +G+    ++ S L   YA+C   S A 
Sbjct: 7   FATTAAQCESLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYAS 66

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHV 463
            LFDK+S+    +WN+M+      G   +A+ LF +M    R   D  ++  V+ AC  +
Sbjct: 67  HLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDL 126

Query: 464 GLVELG 469
            L+++G
Sbjct: 127 SLIDVG 132


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 171/545 (31%), Positives = 281/545 (51%), Gaps = 69/545 (12%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R ++    K LHAQ I +     T  A+ +I+ YT  + +H A +LF  +    +  W +
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKS 75

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   +  +    +A+  F EM   G   +  V PSVLK+C  + D+  GE +H  +++  
Sbjct: 76  VIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG 135

Query: 210 FGTDAFVVSSLIDMYSKC---GS---------------------------------VEKA 233
              D +  ++L++MY+K    GS                                 ++  
Sbjct: 136 MDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSV 195

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           ++VF+ M  KD+V+ N +++GY Q G+  +AL +V E+GT  +KP+  T ++++  FS+ 
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255

Query: 294 GDQVMVSKLFQLMRAKGVEPDV-------------------------------VSWTSVI 322
            D +   ++   +  KG++ DV                               +SW S++
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           +G V N   +EA   F++M++    P +   SS++PACA  A +  GK++HG  +  G  
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            ++ + SALVDMY+KCG I  AR +FD+M+  + V+W ++I G A HG+  EA+ LF +M
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEM 435

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           + +  K + ++F AVLTAC HVGLV+     FN M + Y +    EHYA + DLLGRAG+
Sbjct: 436 KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGK 495

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L EAY  I  M  EP   VW  LL +C  H N+ELAE  A+ +  ++ E+    +L+ ++
Sbjct: 496 LEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNM 555

Query: 562 YANAG 566
           YA+ G
Sbjct: 556 YASNG 560



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 158/319 (49%), Gaps = 5/319 (1%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H  +I  G+     I + L+  Y +   I  +  +F  +   +   W +L   Y +
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G + EA+ +F +M    +K       SV+ AC HL+ +  G+++H  VL+  FG++ F+
Sbjct: 321 NGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFI 380

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+L+DMYSKCG+++ A+K+FD M   D V+  A++ G+   G   EA++L EE+    V
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV 440

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
           KPN V +  +++  S  G        F  M +  G+  ++  + +V   L      +EA+
Sbjct: 441 KPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAY 500

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           +   +M  +   PT +  S++L +C+   N+   +++      +  E ++     + +MY
Sbjct: 501 NFISKMCVE---PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSE-NMGAYVLMCNMY 556

Query: 396 AKCGFISEARTLFDKMSER 414
           A  G   E   L  +M ++
Sbjct: 557 ASNGRWKEMAKLRLRMRKK 575



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 119/258 (46%), Gaps = 13/258 (5%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK LH  ++  G      IA+ L+  Y++C NI  AR +FD +   +   W A+   
Sbjct: 359 LHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMG 418

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LSDIGTGEKIHSLVLKHSFG 211
           +A  G+  EAV++F EM  QG+K N     +VL AC H  L D   G   +S+   +   
Sbjct: 419 HALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG-YFNSMTKVYGLN 477

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGLATEALNLVE 269
            +    +++ D+  + G +E+A     +M VE      + ++S   V + L   A  + E
Sbjct: 478 QELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLEL-AEKVAE 536

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPDVVSWTSVISGLVHN 328
           +I T   + N+  +  + + ++ +G    ++KL   MR KG+ +    SW   +    H 
Sbjct: 537 KIFTVDSE-NMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIE-MKNKTHG 594

Query: 329 FCNDE----AFDTFKEML 342
           F + +    + D   E L
Sbjct: 595 FVSGDRSHPSMDKINEFL 612


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 168/506 (33%), Positives = 271/506 (53%), Gaps = 47/506 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYARRG 158
           +HAQ++V   + +      L++     +N  +A +LF  I P  N + +  +  A     
Sbjct: 37  VHAQMVVK--SSIHSPNNHLLSKAIHLKNFTYASLLFSHIAPHPNDYAFNIMIRALTTTW 94

Query: 159 YHQE-AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           +H   A+T+FH M    L  N F  P    +C +L+ +      HSLV K +  +D    
Sbjct: 95  HHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTT 154

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT-PRV 276
            SLI MYS+CG V  A+KVFDE+  +D+V+ N+M++GY + G A EA+ +  E+G     
Sbjct: 155 HSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGF 214

Query: 277 KPNVVT------------------W-----------------NTLISGFSKSGDQVMVSK 301
           +P+ ++                  W                 + LIS ++K GD     +
Sbjct: 215 EPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARR 274

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M A+    DV++W +VISG   N   DEA   F  M          T++++L ACA
Sbjct: 275 IFDGMAAR----DVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACA 330

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           +   +  GK+I   A   G + D+ V +AL+DMYAKCG ++ A+ +F +M ++N  +WN+
Sbjct: 331 TIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNA 390

Query: 422 MIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           MI   A+HG   EA+ LF  M +     + + ++F  +L+AC H GLV  G RLF+MM  
Sbjct: 391 MISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMST 450

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + ++P+ EHY+CMVDLL RAG L EA+++I+ M  +PD    GALLGAC++  N+++ E
Sbjct: 451 LFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGE 510

Query: 539 IAAKHLSELEPESAANNMLLTDLYAN 564
              + + E++P ++ N ++ + +YAN
Sbjct: 511 RVIRMILEVDPSNSGNYIISSKIYAN 536



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 149/284 (52%), Gaps = 10/284 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +   ++  G+   + I + LI+ Y +C ++  AR +FD +   ++  W A+   
Sbjct: 234 LELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISG 293

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G   EA+++FH M    + +N   + +VL AC  +  +  G++I     +  F  D
Sbjct: 294 YAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHD 353

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE---- 269
            FV ++LIDMY+KCGS+  A++VF EM +K+  + NAM+S     G A EAL+L +    
Sbjct: 354 IFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSD 413

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHN 328
           E G  R  PN +T+  L+S    +G      +LF +M    G+ P +  ++ ++  L   
Sbjct: 414 EGGGAR--PNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARA 471

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
               EA+D  ++M  +   P   T+ ++L AC S  N+  G+ +
Sbjct: 472 GHLYEAWDLIEKMPEK---PDKVTLGALLGACRSKKNVDIGERV 512



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 122/274 (44%), Gaps = 26/274 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +       G      +AT LI  Y +C ++  A+ +F E+P+ N   W A+  
Sbjct: 334 ALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMIS 393

Query: 153 AYARRGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
           A A  G  +EA+++F  M  +  G + N      +L AC H   +  G ++  + +   F
Sbjct: 394 ALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDM-MSTLF 452

Query: 211 GTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQR---GLATEA 264
           G    +   S ++D+ ++ G + +A  + ++M EK D V + A++     +    +    
Sbjct: 453 GLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERV 512

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPDVVSWTSVIS 323
           + ++ E+  P    N +  + + +  +   D    +++  LMR KG+ +    SW  V +
Sbjct: 513 IRMILEV-DPSNSGNYIISSKIYANLNMWEDS---ARMRLLMRQKGITKTPGCSWIEVEN 568

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
            L H F    A D        G C  S  +S+I+
Sbjct: 569 HL-HEF---HAGD--------GLCLDSIDLSNII 590


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 265/512 (51%), Gaps = 43/512 (8%)

Query: 95  QSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           + G+ +H   I +GL      +   LI  Y +C +I HAR +F  +   +   W ++   
Sbjct: 119 RKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITG 178

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             +    ++AV  ++ M   GL  + F + S L +C  L  I  G++ H   +K     D
Sbjct: 179 LDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMD 238

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA-TEALNLVEEIG 272
             V ++L+ +Y++   + + +KVF  M+E+D V+ N ++      G + +EA+ +  E+ 
Sbjct: 239 VSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMM 298

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
                PN VT+                                   N L++ + KSG+  
Sbjct: 299 RAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEME 358

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              ++F  M  +    D VSW S+ISG +HN    +A D    M+ +G      T +++L
Sbjct: 359 NCEEIFSRMSER---RDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVL 415

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACA+ A +  G E+H CAI   +E D+ + SALVDMY+KCG I  A   F+ M  RN  
Sbjct: 416 SACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLY 475

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +WNSMI G A HG+ D A+ LF +M+   +L DH++F  VL+AC H+GLV+ G   F  M
Sbjct: 476 SWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSM 535

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC--KNHGNI 534
            E Y ++PR EHY+CMVDLLGRAG L +    I  M  +P++ +W  +LGAC   N    
Sbjct: 536 TEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKT 595

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           EL   AA+ L  ++P++A N +LL+++YA+ G
Sbjct: 596 ELGRRAAEMLFNMDPQNAVNYVLLSNMYASGG 627



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 209/475 (44%), Gaps = 46/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
            + H  ++  G      +   LI  Y    +   AR LFDE+P  N   W  L   Y + 
Sbjct: 20  NLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQN 79

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH-LSDIGTGEKIHSLVLKHSFGTDAFV 216
           G  ++A  V  EM  +G   N F   S ++AC   +     G ++H   ++         
Sbjct: 80  GMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVA 139

Query: 217 V-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V + LI+MY+KCG ++ A+ VF  MV+KD V+ N+M++G  Q     +A+     +    
Sbjct: 140 VGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTG 199

Query: 276 VKP-----------------------------------NVVTWNTLISGFSKSGDQVMVS 300
           + P                                   +V   NTL++ ++++       
Sbjct: 200 LMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQ 259

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCN-DEAFDTFKEMLSQGFCPTSATISSILPA 359
           K+F  M    +E D VSW +VI  L  +  +  EA + F EM+  G+ P   T  ++L  
Sbjct: 260 KVFSWM----LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLAT 315

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVT 418
            +S +  +   +IH   +   V+ D  + +AL+  Y K G +     +F +MSE R+ V+
Sbjct: 316 VSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVS 375

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNSMI G  ++    +A++L   M +R ++LD  +F  VL+AC  V  +E G  + +   
Sbjct: 376 WNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEV-HACA 434

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            +  +       + +VD+  + GR+  A      M    +L+ W +++     HG
Sbjct: 435 IRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR-NLYSWNSMISGYARHG 488



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 5/240 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA  I + L     I + L+  Y++C  I +A   F+ +P  N++ W ++   
Sbjct: 424 LECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISG 483

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGT 212
           YAR G+   A+ +F  M + G   +      VL AC H+  +  G E   S+   +    
Sbjct: 484 YARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVP 543

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR--GLATEALNLVEE 270
                S ++D+  + G ++K +   ++M  K  + +   V G   R  G  TE      E
Sbjct: 544 RVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAE 603

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNF 329
           +       N V +  L + ++  G    +++  + MR   V+ +   SW ++  G VH F
Sbjct: 604 MLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDG-VHVF 662


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 176/532 (33%), Positives = 275/532 (51%), Gaps = 39/532 (7%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
             L    +S  + +  R   L+ G+++HA + VSGL     +   LI  Y +C  I  AR
Sbjct: 37  LRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWAR 96

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH-- 191
           ++F+   + +   W +L   Y R G + E + +  +M   GL  N + + S LKACG   
Sbjct: 97  LVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNF 156

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
            S I  G+ +H   +K     D  V ++L+D Y+K G +E A K+F  M + ++V  NAM
Sbjct: 157 SSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAM 216

Query: 252 VSGYVQ-----RGLATEALNLVEEIGTPRVKPNVVTWNTLISG----------------- 289
           ++G++Q        A EA+ L  E+ +  +KP+  T+++++                   
Sbjct: 217 IAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQI 276

Query: 290 --FSKSGDQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAF 335
             ++   D+ + + L +L    G             + DVVSWTS+I G V N   +   
Sbjct: 277 FKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGL 336

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F E+L  G  P   TIS +L ACA+ A ++ G++IH  AI  G+     ++++ + MY
Sbjct: 337 TLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMY 396

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           AKCG I  A   F +    + V+W+ MI   A HG   EA++LF  M+      +H++F 
Sbjct: 397 AKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFL 456

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL AC H GLVE G R F +M++ + I P  +H AC+VDLLGRAGRLAEA   I     
Sbjct: 457 GVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGF 516

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           E D  +W +LL AC+ H   +  +  A+ + ELEPE+AA+ +LL ++Y +AG
Sbjct: 517 EGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAG 568



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 204/442 (46%), Gaps = 59/442 (13%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +PK N+  W +L   Y + G++ E + +F E  +  L+ + F   + L  CG   D+  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
             IH+L+     G    + +SLIDMY KCG ++ A+ VF+   E D V+ N++++GYV+ 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 259 GLATEALNLVEEIGTPRVKPN-------------------------------------VV 281
           G   E L L+ ++    +  N                                     VV
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH------NFCNDEAF 335
               L+  ++K GD    +K+F+LM     +P+VV + ++I+G +        F N EA 
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMP----DPNVVMYNAMIAGFLQMETMADEFAN-EAM 235

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F EM S+G  P+  T SSIL AC++      GK+IH       ++ D  + +ALV++Y
Sbjct: 236 YLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELY 295

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFT 454
           +  G I +    F    + + V+W S+I G   +G  +  + LF+++    +K D  + +
Sbjct: 296 SLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTIS 355

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD----LLGRAGRLAEAYEMIK 510
            +L+AC ++  V+ G+++       Y I     ++  + +    +  + G +  A    K
Sbjct: 356 IMLSACANLAAVKSGEQI-----HAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFK 410

Query: 511 TMSTEPDLFVWGALLGACKNHG 532
             +  PD+  W  ++ +   HG
Sbjct: 411 E-TKNPDIVSWSVMISSNAQHG 431



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 173/397 (43%), Gaps = 22/397 (5%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           SR    S   +S  ++      A + GK +HAQ+    L     I   L+  Y+   +I 
Sbjct: 243 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 302

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
                F   PK ++  W +L   + + G  +  +T+FHE+   G K + F I  +L AC 
Sbjct: 303 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 362

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
           +L+ + +GE+IH+  +K   G    + +S I MY+KCG ++ A   F E    DIV+ + 
Sbjct: 363 NLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSV 422

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK- 309
           M+S   Q G A EA++L E +    + PN +T+  ++   S  G      + F++M+   
Sbjct: 423 MISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDH 482

Query: 310 GVEPDVVSWTSVIS--GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           G+ P+V     ++   G        E+F     ++  GF        S+L AC       
Sbjct: 483 GITPNVKHSACIVDLLGRAGRLAEAESF-----IMDSGFEGDPVMWRSLLSACRVHKATD 537

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT-----VTW--- 419
            GK +    I +  E        L ++Y   G    A  + + M +R       ++W   
Sbjct: 538 TGKRVAERVIELEPEAAASY-VLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEV 596

Query: 420 ----NSMIFGCANHGYCDEA-IELFNQMEERKKLDHL 451
               +S + G  +H       ++L   +EE KKLD++
Sbjct: 597 GNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI 633



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELG 469
           M +RN V+WNS+I G    G+  E + LF +      +LD  +F+  L+ C     + LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GAC 528
            RL + +     +         ++D+  + GR+  A  ++   + E D   W +L+ G  
Sbjct: 61  -RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWA-RLVFESADELDSVSWNSLIAGYV 118

Query: 529 KNHGNIELAEIAAKHL 544
           +   N E+  +  K L
Sbjct: 119 RIGSNDEMLRLLVKML 134


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 179/558 (32%), Positives = 284/558 (50%), Gaps = 85/558 (15%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH---RWIA 149
           +L+ G  +HA +  +GL     I   ++  Y  C  +  A  +FDE+ +  I     W +
Sbjct: 142 SLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNS 201

Query: 150 LTGAYARRGYHQEAVTVFHEM---HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           +  AY + G  + A+ +   M   +   L+ +   + ++L AC  +  +  G+++H   +
Sbjct: 202 ILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSV 261

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY----------- 255
           ++    D FV ++L+ MY+KC  + +A KVF+ + +KD+V+ NAMV+GY           
Sbjct: 262 RNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALS 321

Query: 256 ------------------------VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291
                                    Q+G   EAL++  ++    ++PNVVT  +L+SG +
Sbjct: 322 LFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCA 381

Query: 292 KSG-------------------------DQVMV----------SKLFQLMRA-----KGV 311
             G                         D ++V           K +++ R+     +G 
Sbjct: 382 SVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGK 441

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ--GFCPTSATISSILPACASAANMRRG 369
           + +VV+WT +I G   +   ++A   F ++  Q     P + T+S  L ACA    +R G
Sbjct: 442 DKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG 501

Query: 370 KEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           +++H  A+    E + L+V + L+DMY+K G I  AR +FD M  RN V+W S++ G   
Sbjct: 502 RQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGM 561

Query: 429 HGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           HG  +EA+ LF+QM++    +D ++F  VL AC H G+V+ G   F+ M + + I P  E
Sbjct: 562 HGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAE 621

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           HYACMVDLLGRAGRL EA E+IK MS EP   VW ALL A + H NIEL E AA  L+EL
Sbjct: 622 HYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTEL 681

Query: 548 EPESAANNMLLTDLYANA 565
             E+  +  LL++LYANA
Sbjct: 682 GAENDGSYTLLSNLYANA 699



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 247/537 (45%), Gaps = 100/537 (18%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE-IPK-TNIHRWIA 149
           + L + K+ H Q+ V G    T++ +  +  Y EC     A  L    IP  + +  W A
Sbjct: 41  KTLINAKLAHQQIFVHGF---TEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNA 97

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L     + G   + +  + +M   G   + +  P VLKACG +  +  G  +H++V  + 
Sbjct: 98  LIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANG 157

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALN 266
            G++ F+ +S++ MY +CG+++ A ++FDE++E+   DIV+ N++++ YVQ G +  AL 
Sbjct: 158 LGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALR 217

Query: 267 LVEEIG---TPRVKPNVVTW-----------------------------------NTLIS 288
           +   +G   + +++P+ +T                                    N L+S
Sbjct: 218 IAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVS 277

Query: 289 GFSKSGDQVMVSKLFQ-------------------------------LMRAKGVEPDVVS 317
            ++K       +K+F+                               +M+ + ++ DV++
Sbjct: 278 MYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVIT 337

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W++VI+G        EA D F++M   G  P   T++S+L  CAS   +  GK+ H   I
Sbjct: 338 WSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVI 397

Query: 378 --VMGV-----EGDLHVRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCAN 428
             ++ +     E DL V + L+DMYAKC     AR++FD +   ++N VTW  MI G A 
Sbjct: 398 KNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQ 457

Query: 429 HGYCDEAIELFNQMEERK---KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
           HG  ++A++LF Q+ ++K   K +  + +  L AC  +G + LG++L       Y +   
Sbjct: 458 HGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQL-----HAYALRNE 512

Query: 486 TEHYA-----CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            E        C++D+  ++G +  A  +   M    ++  W +L+     HG  E A
Sbjct: 513 NESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGEEA 568



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 110/276 (39%), Gaps = 22/276 (7%)

Query: 94  LQSGKILHA-QLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L+ G+ LHA  L     + +  +   LI  Y++  +I  AR +FD +   N+  W +L  
Sbjct: 498 LRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMT 557

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSFG 211
            Y   G  +EA+ +F +M   G   +      VL AC H   +  G    H +V      
Sbjct: 558 GYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGIT 617

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
             A   + ++D+  + G + +A ++   M +E   V   A++S    +    L   A + 
Sbjct: 618 PGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASK 677

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLV 326
           + E+G      N  ++  L + ++ +     V+++  LM+  G+      SW        
Sbjct: 678 LTELGA----ENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTT 733

Query: 327 HNFCNDEA-----------FDTFKEMLSQGFCPTSA 351
             F  D +            D  K +   G+ P ++
Sbjct: 734 TFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTS 769


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 265/483 (54%), Gaps = 36/483 (7%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + + LI       ++  AR +FD + +  +  W  L   Y +    +EAV +F +    G
Sbjct: 190 VGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDG 249

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG---SVE 231
            + + + + S++ AC  L  +  G ++HSL L+    +DA V   L+DMY+K     +++
Sbjct: 250 FEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMD 309

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLA-TEALNLVEEIGTPRVKPNVVTWNTLISGF 290
            A KVF+ M + D+++  A++SGYVQ G+   + + L  E+    +KPN +T+++++   
Sbjct: 310 YANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSC 369

Query: 291 SK-----SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           +      SG QV       ++++       V   +++S    + C +EA   F ++  + 
Sbjct: 370 ASISDHDSGRQVHA----HVIKSNQASAHTVG-NALVSMYAESGCMEEARRVFNQLYERS 424

Query: 346 FCP---------------------TSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
             P                     +S+T +S++ A AS   + +G+++H  ++  G   D
Sbjct: 425 MIPCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSD 484

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-E 443
             V ++LV MY++CG++ +A   F+++ +RN ++W SMI G A HGY + A+ LF+ M  
Sbjct: 485 RFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMIL 544

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              K + +++ AVL+AC HVGLV  G+  F  MQ  + ++PR EHYACMVDLL R+G + 
Sbjct: 545 TGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVK 604

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA E I  M  + D  VW  LLGAC++H NIE+ EI AK++ ELEP   A  +LL++LYA
Sbjct: 605 EALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYA 664

Query: 564 NAG 566
           +AG
Sbjct: 665 DAG 667



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 154/323 (47%), Gaps = 48/323 (14%)

Query: 194 DIGTGEKIHSLVLKHSF-GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAM 251
           D+  G  +H  +L+      DA V +SL+ +YS+CG+V  A+ VFD M   +DIV+  AM
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVT----------------------------- 282
            S   + G    +L L+ E+    + PN  T                             
Sbjct: 123 ASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMG 182

Query: 283 -WNT-------LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            W T       LI   +++GD     K+F  +    +E  VV WT +IS  V   C +EA
Sbjct: 183 LWGTDVAVGSALIDMLARNGDLASARKVFDGL----IEKTVVVWTLLISRYVQGECAEEA 238

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
            + F + L  GF P   T+SS++ AC    ++R G ++H  A+ MG+  D  V   LVDM
Sbjct: 239 VELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDM 298

Query: 395 YAKCGF---ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI-ELFNQM-EERKKLD 449
           YAK      +  A  +F++M + + ++W ++I G    G  +  +  LF +M  E  K +
Sbjct: 299 YAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPN 358

Query: 450 HLSFTAVLTACCHVGLVELGQRL 472
           H++++++L +C  +   + G+++
Sbjct: 359 HITYSSILKSCASISDHDSGRQV 381



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           + V  N+L++ +S+ G       +F  MR  G+  D+VSWT++ S L  N     +    
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMR--GLR-DIVSWTAMASCLARNGAERGSLLLI 139

Query: 339 KEMLSQGFCPTSATISSILPACAS-----AANMRRGKEIHGCAIVMGVEG-DLHVRSALV 392
            EML  G  P + T+ +   AC                +H     MG+ G D+ V SAL+
Sbjct: 140 GEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHK----MGLWGTDVAVGSALI 195

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHL 451
           DM A+ G ++ AR +FD + E+  V W  +I         +EA+ELF + +E+  + D  
Sbjct: 196 DMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRY 255

Query: 452 SFTAVLTACCHVGLVELGQRLFNM 475
           + +++++AC  +G V LG +L ++
Sbjct: 256 TMSSMISACTELGSVRLGLQLHSL 279



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 364 ANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWN 420
            ++R G+ +H   ++ G  ++ D  V ++L+ +Y++CG ++ AR +FD M   R+ V+W 
Sbjct: 62  GDLRLGRALHR-RLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWT 120

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +M    A +G    ++ L  +M E   L +  +  A   AC    L  L   +   +  K
Sbjct: 121 AMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHK 180

Query: 480 YKIMPRTEHY-ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
             +        + ++D+L R G LA A ++   +  E  + VW  L+
Sbjct: 181 MGLWGTDVAVGSALIDMLARNGDLASARKVFDGL-IEKTVVVWTLLI 226


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 172/511 (33%), Positives = 262/511 (51%), Gaps = 41/511 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G  +H+   + GL     + T L+ FY +C  +  A+ LF  +   ++  W A+  
Sbjct: 124 AIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIA 183

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             +  G   +AV +  +M  +G+  N   I  VL   G    +G G+ +H   ++ SF  
Sbjct: 184 GCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN 243

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-I 271
              V + L+DMY+KC  +  A+K+FD M  ++ V+ +AM+ GYV      EAL L ++ I
Sbjct: 244 GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMI 303

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
               + P  VT                                    NTL+S ++K G  
Sbjct: 304 LKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVI 363

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               + F  M  K    D VS+++++SG V N     A   F+ M   G  P   T+  +
Sbjct: 364 DDAIRFFDEMNPK----DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGV 419

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LPAC+  A ++ G   HG  IV G   D  + +AL+DMY+KCG IS AR +F++M   + 
Sbjct: 420 LPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 479

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN+MI G   HG   EA+ LF+ +     K D ++F  +L++C H GLV  G+  F+ 
Sbjct: 480 VSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDA 539

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M   + I+PR EH  CMVD+LGRAG + EA+  I+ M  EPD+ +W ALL AC+ H NIE
Sbjct: 540 MSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIE 599

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L E  +K +  L PES  N +LL+++Y+ AG
Sbjct: 600 LGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 238/493 (48%), Gaps = 51/493 (10%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   +E  I+ ++L   K +H   + +     + +  KL   Y  C  +  AR LFDEIP
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             ++  W  +  AYA  G    A+ ++H M   G++ N +  P VLKAC  L  I  G +
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IHS        +D FV ++L+D Y+KCG + +A+++F  M  +D+VA NAM++G    GL
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 261 ATEALNLVEEIGTPRVKPN-----------------------------------VVTWNT 285
             +A+ L+ ++    + PN                                   VV    
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQ 344
           L+  ++K    +   K+F +M   GV  + VSW+++I G V + C  EA + F +M L  
Sbjct: 251 LLDMYAKCQCLLYARKIFDVM---GVRNE-VSWSAMIGGYVASDCMKEALELFDQMILKD 306

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
              PT  T+ S+L ACA   ++ RG+++H   I +G   D+ + + L+ MYAKCG I +A
Sbjct: 307 AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDA 366

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV 463
              FD+M+ +++V++++++ GC  +G    A+ +F  M+      D  +   VL AC H+
Sbjct: 367 IRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHL 426

Query: 464 GLVELGQRLFNMMQEKYKIMP--RTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
             ++ G          Y I+    T+   C  ++D+  + G+++ A E+   M    D+ 
Sbjct: 427 AALQHG-----FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH-DIV 480

Query: 520 VWGALLGACKNHG 532
            W A++     HG
Sbjct: 481 SWNAMIIGYGIHG 493



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 10/203 (4%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L AC  + ++   K+IH   +      D  V   L  +Y  C  +  AR LFD++   +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
            + WN +I   A +G  D AI+L++ M     + +  ++  VL AC  +  +E G  + +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 475 MMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             +        ++ + C  +VD   + G L EA  +  +MS   D+  W A++  C  +G
Sbjct: 134 HAK---MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYG 189

Query: 533 NIELAEIAAKHLSELEPESAANN 555
              L + A + + +++ E    N
Sbjct: 190 ---LCDDAVQLIMQMQEEGICPN 209


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 176/532 (33%), Positives = 275/532 (51%), Gaps = 39/532 (7%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
             L    +S  + +  R   L+ G+++HA + VSGL     +   LI  Y +C  I  AR
Sbjct: 116 LRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWAR 175

Query: 134 MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH-- 191
           ++F+   + +   W +L   Y R G + E + +  +M   GL  N + + S LKACG   
Sbjct: 176 LVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNF 235

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
            S I  G+ +H   +K     D  V ++L+D Y+K G +E A K+F  M + ++V  NAM
Sbjct: 236 SSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAM 295

Query: 252 VSGYVQ-----RGLATEALNLVEEIGTPRVKPNVVTWNTLISG----------------- 289
           ++G++Q        A EA+ L  E+ +  +KP+  T+++++                   
Sbjct: 296 IAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQI 355

Query: 290 --FSKSGDQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAF 335
             ++   D+ + + L +L    G             + DVVSWTS+I G V N   +   
Sbjct: 356 FKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGL 415

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F E+L  G  P   TIS +L ACA+ A ++ G++IH  AI  G+     ++++ + MY
Sbjct: 416 TLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMY 475

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           AKCG I  A   F +    + V+W+ MI   A HG   EA++LF  M+      +H++F 
Sbjct: 476 AKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFL 535

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL AC H GLVE G R F +M++ + I P  +H AC+VDLLGRAGRLAEA   I     
Sbjct: 536 GVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGF 595

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           E D  +W +LL AC+ H   +  +  A+ + ELEPE+AA+ +LL ++Y +AG
Sbjct: 596 EGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAG 647



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 231/505 (45%), Gaps = 59/505 (11%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L    Y++ ++   R  +L  GK+ H  +I +       +   L+  Y +C     A+ L
Sbjct: 17  LDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKL 76

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FD +PK N+  W +L   Y + G++ E + +F E  +  L+ + F   + L  CG   D+
Sbjct: 77  FDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL 136

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G  IH+L+     G    + +SLIDMY KCG ++ A+ VF+   E D V+ N++++GY
Sbjct: 137 RLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGY 196

Query: 256 VQRGLATEALNLVEEIGTPRVKPN------------------------------------ 279
           V+ G   E L L+ ++    +  N                                    
Sbjct: 197 VRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL 256

Query: 280 -VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH------NFCND 332
            VV    L+  ++K GD    +K+F+LM     +P+VV + ++I+G +        F N 
Sbjct: 257 DVVVGTALLDTYAKIGDLEDATKIFKLMP----DPNVVMYNAMIAGFLQMETMADEFAN- 311

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F EM S+G  P+  T SSIL AC++      GK+IH       ++ D  + +ALV
Sbjct: 312 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALV 371

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
           ++Y+  G I +    F    + + V+W S+I G   +G  +  + LF+++    +K D  
Sbjct: 372 ELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEF 431

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD----LLGRAGRLAEAYE 507
           + + +L+AC ++  V+ G+++       Y I     ++  + +    +  + G +  A  
Sbjct: 432 TISIMLSACANLAAVKSGEQI-----HAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANM 486

Query: 508 MIKTMSTEPDLFVWGALLGACKNHG 532
             K  +  PD+  W  ++ +   HG
Sbjct: 487 TFKE-TKNPDIVSWSVMISSNAQHG 510



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 173/397 (43%), Gaps = 22/397 (5%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           SR    S   +S  ++      A + GK +HAQ+    L     I   L+  Y+   +I 
Sbjct: 322 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 381

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
                F   PK ++  W +L   + + G  +  +T+FHE+   G K + F I  +L AC 
Sbjct: 382 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 441

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
           +L+ + +GE+IH+  +K   G    + +S I MY+KCG ++ A   F E    DIV+ + 
Sbjct: 442 NLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSV 501

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK- 309
           M+S   Q G A EA++L E +    + PN +T+  ++   S  G      + F++M+   
Sbjct: 502 MISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDH 561

Query: 310 GVEPDVVSWTSVIS--GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           G+ P+V     ++   G        E+F     ++  GF        S+L AC       
Sbjct: 562 GITPNVKHSACIVDLLGRAGRLAEAESF-----IMDSGFEGDPVMWRSLLSACRVHKATD 616

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT-----VTW--- 419
            GK +    I +  E        L ++Y   G    A  + + M +R       ++W   
Sbjct: 617 TGKRVAERVIELEPEAAASY-VLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEV 675

Query: 420 ----NSMIFGCANHGYCDEA-IELFNQMEERKKLDHL 451
               +S + G  +H       ++L   +EE KKLD++
Sbjct: 676 GNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI 712



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 4/202 (1%)

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           G    S T + ++       ++  GK  H   I    +  L + + L+ MY KCG    A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV 463
           + LFD+M +RN V+WNS+I G    G+  E + LF +      +LD  +F+  L+ C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             + LG RL + +     +         ++D+  + GR+  A  ++   + E D   W +
Sbjct: 134 LDLRLG-RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWA-RLVFESADELDSVSWNS 191

Query: 524 LL-GACKNHGNIELAEIAAKHL 544
           L+ G  +   N E+  +  K L
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKML 213


>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
 gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
          Length = 557

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 259/478 (54%), Gaps = 21/478 (4%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE-IPKT--NIHRWIALTG 152
           + + L AQL+V GL    + A  LI       +  HAR +FD  +P    N++ W A   
Sbjct: 28  AARQLQAQLLVRGLPLPARAAVALIA---SSHSPRHARAVFDSAVPAASENVYLWTATIA 84

Query: 153 AYARRGYH-----QEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           AYAR         + A+ +F  M  +G+ + N F   SV++ C  L  +  G ++H  + 
Sbjct: 85  AYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAVREGIQVHGFLF 144

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
               G  + V ++L+DMY   G V  A++VFDEM   ++V  N MV+ YV+ G      +
Sbjct: 145 SAGLGRASHVGAALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACYVRAGDVEAGRD 204

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           + + +     + + ++WNTL+ G+ + G+  +   LF+ M  + V     SW  VI+   
Sbjct: 205 VFDRMA----ERDPISWNTLMMGYLRQGEAGVARDLFEEMPDRNVN----SWNMVIAACS 256

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
                 +A + F  M    F P  AT++ ++ ACA   ++    ++HG      VE + H
Sbjct: 257 QEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMNFH 316

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
           V ++L+DMYAKCG +S+A  LF +   ++TV++N MI   A HG+  +A+++F++M EE 
Sbjct: 317 VLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEG 376

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + D ++F  VL+AC H GLV  G+  F  M+  Y I    +HYACMVDL GRAG + EA
Sbjct: 377 LQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIEQSPDHYACMVDLYGRAGLIEEA 436

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           Y++ + M  +P   VWGAL+ AC+ H N+E+ ++AA+ L  +EP +    +LL +  A
Sbjct: 437 YQLARAMPVKPHAGVWGALINACRKHCNVEVGKVAARELIAIEPGNPGTYVLLANTLA 494



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 107/265 (40%), Gaps = 62/265 (23%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH------ 145
           RA++ G  +H  L  +GL R + +   L+  Y     +  AR +FDE+P TN+       
Sbjct: 131 RAVREGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMV 190

Query: 146 -------------------------RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF 180
                                     W  L   Y R+G    A  +F EM  + +     
Sbjct: 191 ACYVRAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGVARDLFEEMPDRNVNSWNM 250

Query: 181 VI---------------------------PSVL----KACGHLSDIGTGEKIHSLVLKHS 209
           VI                           P+ +     AC  L  +    ++H ++ K  
Sbjct: 251 VIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGSLSIASQVHGILRKGC 310

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +  V++SLIDMY+KCGSV +A  +F E   KD V+ N M+    Q G   +AL + +
Sbjct: 311 VEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICALAQHGHGRDALQIFD 370

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSG 294
           E+    ++P+ VT+  ++S  + +G
Sbjct: 371 EMSEEGLQPDAVTFLGVLSACAHAG 395



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 109/309 (35%), Gaps = 110/309 (35%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           AR LF+E+P  N++ W  +  A ++ G   +AV VF+ M +   + +   +  ++ AC  
Sbjct: 233 ARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQ 292

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK------------------- 232
           L  +    ++H ++ K     +  V++SLIDMY+KCGSV +                   
Sbjct: 293 LGSLSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVM 352

Query: 233 ------------AKKVFDEMVEK----DIVAM---------------------------- 248
                       A ++FDEM E+    D V                              
Sbjct: 353 ICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYA 412

Query: 249 --------NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK-------- 292
                     MV  Y + GL  EA  L   +    VKP+   W  LI+   K        
Sbjct: 413 IEQSPDHYACMVDLYGRAGLIEEAYQLARAMP---VKPHAGVWGALINACRKHCNVEVGK 469

Query: 293 -------------SGDQVM-------------VSKLFQLMRAKGVEPDV-VSWTSVISGL 325
                         G  V+             V  ++Q MR KG+E     SW  V   +
Sbjct: 470 VAARELIAIEPGNPGTYVLLANTLARGQQWDFVETVWQSMRGKGIEKTAGCSWLEV-DRV 528

Query: 326 VHNFCNDEA 334
           VH F   E+
Sbjct: 529 VHEFLMGES 537


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 166/472 (35%), Positives = 252/472 (53%), Gaps = 13/472 (2%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H QL    +   +++ T+ I+  +   ++ +A  +F      N + + AL    A    
Sbjct: 61  IHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSR 120

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            + +++ F  M    +  +    P VLK+   LS+ G G  +H  +LK     D+FV  S
Sbjct: 121 FESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVS 180

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEK----DIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           L+DMY K   +  A KVFDE  E      ++  N ++ GY + G   +A  L + +    
Sbjct: 181 LVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMP--- 237

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
            K +  +WN+LI+GF K GD     +LF     K  E +VVSWT++++G   N   ++A 
Sbjct: 238 -KKDTGSWNSLINGFMKMGDMGRAKELF----VKMPEKNVVSWTTMVNGFSQNGDPEKAL 292

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           +TF  ML +G  P   TI S L ACA    +  G  IH      G + +L + +ALVDMY
Sbjct: 293 ETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMY 352

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFT 454
           AKCG I  A  +F +  E+  + W+ MI+G A HG+  +A++ F  M+    K D + F 
Sbjct: 353 AKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFL 412

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVL AC H G V  G + F+ M+  Y I P  +HY  +VD+LGRAGRL EA + I+ M  
Sbjct: 413 AVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPI 472

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            PD  VWGAL  AC+ H N+E+AE+A+K L +LEP+   + + L++ YA+ G
Sbjct: 473 TPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVG 524



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 144/383 (37%), Gaps = 102/383 (26%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT----NIHRWIALTG 152
           G+ LH  ++  GL   + +   L+  Y + + +  A  +FDE P++    ++  W  L  
Sbjct: 159 GRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIH 218

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y R G   +A  +F  M            P          D G+               
Sbjct: 219 GYCRMGDLVKATELFDSM------------PK--------KDTGSW-------------- 244

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LV 268
                +SLI+ + K G + +AK++F +M EK++V+   MV+G+ Q G   +AL     ++
Sbjct: 245 -----NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCML 299

Query: 269 EEIGTPR-------------------------------VKPNVVTWNTLISGFSKSGDQV 297
           EE   P                                 K N+V    L+  ++K G+  
Sbjct: 300 EEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIE 359

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K+F   + KG    ++ W+ +I G   +    +A   F+ M   G  P S    ++L
Sbjct: 360 HAEKVFHETKEKG----LLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVL 415

Query: 358 PACASAA----------NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
            AC+ +           NMRRG  I         E  +   + +VDM  + G + EA   
Sbjct: 416 NACSHSGQVNEGLKFFDNMRRGYLI---------EPSMKHYTLVVDMLGRAGRLDEALKF 466

Query: 408 FDKMS-ERNTVTWNSMIFGCANH 429
              M    + V W ++   C  H
Sbjct: 467 IRAMPITPDFVVWGALFCACRTH 489



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 2/161 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL +G  +H  L  +G      I T L+  Y +C NI HA  +F E  +  +  W  +  
Sbjct: 322 ALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIW 381

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A  G+ ++A+  F  M   G K +  V  +VL AC H   +  G K    + +     
Sbjct: 382 GWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIE 441

Query: 213 DAFVVSSL-IDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM 251
            +    +L +DM  + G +++A K    M +  D V   A+
Sbjct: 442 PSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGAL 482


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 171/532 (32%), Positives = 266/532 (50%), Gaps = 73/532 (13%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI-ATKLITFYTECQ 127
           +  R   L    + + + +  + +  + GK +H  L  +G  R T I A  LI  Y EC 
Sbjct: 53  LAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECG 112

Query: 128 -------------------------------NIHHARMLFDEIPKTNIHRWIALTGAYAR 156
                                          ++++AR LFD + + ++  W  +  AYA+
Sbjct: 113 RDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAK 172

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           +G   EA+ ++ +     +  N F    VL  C  L ++   +++H  VL   F ++  +
Sbjct: 173 QGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVL 232

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            SS++D Y+KCG +  A+ +FDEM+ KDI A                             
Sbjct: 233 SSSIVDAYAKCGEMRCARTLFDEMLVKDIHA----------------------------- 263

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
                 W T++SG++K GD    S+LF  M     E + VSW+++ISG   N    EA D
Sbjct: 264 ------WTTIVSGYAKWGDMNSASELFHQMP----EKNPVSWSALISGYARNSLGHEALD 313

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M+  G  P   T SS L ACAS A ++ GK++HG  I      +  V S+L+DMY+
Sbjct: 314 YFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYS 373

Query: 397 KCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           KCG +  +  +F  M ++++ V WN+MI   A +G+ ++A+++FN M E   K D ++F 
Sbjct: 374 KCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFI 433

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L+AC H GLV+ G R F  M   + + P  EHY+C++DLLGRAG   E    ++ MS 
Sbjct: 434 VILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSC 493

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +PD  VW ALLG C+ H NIEL    A+ + EL+P+S+A  + L  LYA  G
Sbjct: 494 KPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLG 545


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 266/483 (55%), Gaps = 36/483 (7%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + + LI       ++  AR +FD + +  +  W  L   Y +    +EAV +F +    G
Sbjct: 190 VGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDG 249

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG---SVE 231
            + + + + S++ AC  L  +  G ++HSL L+  F +DA V   L+DMY+K     +++
Sbjct: 250 FEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMD 309

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLA-TEALNLVEEIGTPRVKPNVVTWNTLISGF 290
            A KVF+ M + D+++  A++SGYVQ G+   + + L  E+    +KPN +T+++++   
Sbjct: 310 YANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKAC 369

Query: 291 SK-----SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           +      SG QV       ++++       V   +++S    + C +EA   F ++  + 
Sbjct: 370 ANISDHDSGRQVHA----HVIKSNQAAAHTVG-NALVSMYAESGCMEEARRVFNQLYERS 424

Query: 346 F--CPT-------------------SATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
              C T                   S+T +S++ A AS   + +G+++H   +  G   D
Sbjct: 425 MISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSD 484

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-E 443
             V ++LV MY++CG++ +A   F+++ +RN ++W SMI G A HGY + A+ LF+ M  
Sbjct: 485 RFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMIL 544

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              K + +++ AVL+AC HVGLV  G+  F  MQ  + ++PR EHYACMVDLL R+G + 
Sbjct: 545 TGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVK 604

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA E I  M  + D  VW  LLGAC++H NIE+ EIAAK++ ELEP   A  +LL++LYA
Sbjct: 605 EALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYA 664

Query: 564 NAG 566
           +AG
Sbjct: 665 DAG 667



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 226/490 (46%), Gaps = 64/490 (13%)

Query: 94  LQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPK-TNIHRWIALT 151
           L+ G+ LH +L+   L  R   +A  L+T Y+ C  +  AR +FD +    +I  W A+ 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GH----LSDIGTGEKIHSLVL 206
              AR G  +E++ +  EM   GL  N + + +V  AC  H    L        +H + L
Sbjct: 124 SCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGL 183

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
              +GTD  V S+LIDM ++ G +  A+KVFD ++EK +V    ++S YVQ   A EA+ 
Sbjct: 184 ---WGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSG-------------------------------- 294
           +  +      +P+  T +++IS  ++ G                                
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYA 300

Query: 295 ----DQVM--VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND-EAFDTFKEMLSQGFC 347
               +Q M   +K+F+ MR    + DV+SWT++ISG V +   + +    F EML++   
Sbjct: 301 KSNIEQAMDYANKVFERMR----KNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIK 356

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T SSIL ACA+ ++   G+++H   I         V +ALV MYA+ G + EAR +
Sbjct: 357 PNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRV 416

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467
           F+++ ER+ ++       C   G          +M+    +   +F ++++A   VG++ 
Sbjct: 417 FNQLYERSMIS-------CITEGRDAPLDHRIGRMD--MGISSSTFASLISAAASVGMLT 467

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            GQ+L  M  +      R    + +V +  R G L +A      +  + ++  W +++  
Sbjct: 468 KGQQLHAMTLKAGFGSDRFVSNS-LVSMYSRCGYLEDACRSFNELK-DRNVISWTSMISG 525

Query: 528 CKNHGNIELA 537
              HG  E A
Sbjct: 526 LAKHGYAERA 535



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 1/148 (0%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ LHA  + +G      ++  L++ Y+ C  +  A   F+E+   N+  W ++   
Sbjct: 466 LTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISG 525

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGT 212
            A+ GY + A+++FH+M + G+K N     +VL AC H+  +  G E   S+   H    
Sbjct: 526 LAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIP 585

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                + ++D+ ++ G V++A +  +EM
Sbjct: 586 RMEHYACMVDLLARSGLVKEALEFINEM 613


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 161/502 (32%), Positives = 257/502 (51%), Gaps = 32/502 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G++LH   + SGL     +++ LI  Y +   I     +F+++   N+  W A+      
Sbjct: 143 GELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH 202

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            GY+ E +  F EM    +  +       LKA    S +  G+ IH+  +K  F   +FV
Sbjct: 203 AGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFV 262

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L  MY+KCG  +   ++F++M   D+V+   ++S YVQ G    A+   + +    V
Sbjct: 263 INTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYV 322

Query: 277 KPNVVTWNTLIS-----GFSKSGDQV---------------------MVSKLFQLMRAKG 310
            PN  T+  +IS       +K G+Q+                     + SK   L  A  
Sbjct: 323 SPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASL 382

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V       D++SW+++IS         EAFD    M  +G  P    +SS+L  C S A 
Sbjct: 383 VFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMAL 442

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + +GK++H   + +G++ +  V SA++ MY+KCG + EA  +F+ M   + ++W +MI G
Sbjct: 443 LEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMING 502

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HGY  EAI LF ++     K D++ F  VLTAC H G+V+LG   F +M   Y+I P
Sbjct: 503 YAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISP 562

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
             EHY C++DLL RAGRL+EA  +I++M    D  VW  LL AC+ HG+++     A+ L
Sbjct: 563 SKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQL 622

Query: 545 SELEPESAANNMLLTDLYANAG 566
            +L+P SA  ++ L ++YA  G
Sbjct: 623 LQLDPNSAGTHITLANIYAAKG 644



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 212/442 (47%), Gaps = 51/442 (11%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACG 190
           AR +FD++   +   W  L   Y       EA+ +F  M +  G +++ F+I   LKAC 
Sbjct: 76  ARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACA 135

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
              +I  GE +H   +K       FV S+LIDMY K G +E+  +VF++M+ +++V+  A
Sbjct: 136 LGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTA 195

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--------------------------- 283
           +++G V  G   E L    E+   +V  +  T+                           
Sbjct: 196 IIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQG 255

Query: 284 --------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                   NTL + ++K G    V +LF+ MR     PDVVSWT++IS  V     + A 
Sbjct: 256 FDESSFVINTLATMYNKCGKPDYVMRLFEKMRM----PDVVSWTTLISTYVQMGEEEHAV 311

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + FK M      P   T ++++ +CA+ A  + G++IHG  + +G+   L V ++++ +Y
Sbjct: 312 EAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLY 371

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           +KCG +  A  +F  ++ ++ ++W+++I   +  GY  EA +  + M  E  K +  + +
Sbjct: 372 SKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALS 431

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH----YACMVDLLGRAGRLAEAYEMIK 510
           +VL+ C  + L+E G+++       + +    +H    ++ ++ +  + G + EA ++  
Sbjct: 432 SVLSVCGSMALLEQGKQV-----HAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFN 486

Query: 511 TMSTEPDLFVWGALLGACKNHG 532
            M    D+  W A++     HG
Sbjct: 487 GMKIN-DIISWTAMINGYAEHG 507



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 4/279 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + G+ +H  ++  GL     +A  +IT Y++C  +  A ++F  I + +I  W  +  
Sbjct: 341 AAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIIS 400

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++ GY +EA      M  +G K N F + SVL  CG ++ +  G+++H+ +L      
Sbjct: 401 VYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDH 460

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +A V S++I MYSKCGSV++A K+F+ M   DI++  AM++GY + G + EA+NL E+I 
Sbjct: 461 EAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKIS 520

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCN 331
           +  +KP+ V +  +++  + +G   +    F LM     + P    +  +I  L      
Sbjct: 521 SVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRL 580

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
            EA    + M    F       S++L AC    ++ RG+
Sbjct: 581 SEAEHIIRSM---PFHTDDVVWSTLLRACRVHGDVDRGR 616



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 140/299 (46%), Gaps = 39/299 (13%)

Query: 213 DAFVVSSLIDMYS------KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL- 265
           +A+ V +++++ S      K G + KA+ +FD+M  +D ++   +++GYV    + EAL 
Sbjct: 50  NAYSVHNMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALI 109

Query: 266 ---NLVEEIGTPRVKPNV------------VTWNTLISGFS-KSG------------DQV 297
              N+    G  R +  +            + +  L+ GFS KSG            D  
Sbjct: 110 LFSNMWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMY 169

Query: 298 M-VSKLFQLMRA--KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           M V K+ Q  R   K +  +VVSWT++I+GLVH   N E    F EM        S T +
Sbjct: 170 MKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFA 229

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
             L A A ++ +  GK IH   I  G +    V + L  MY KCG       LF+KM   
Sbjct: 230 IALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMP 289

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           + V+W ++I      G  + A+E F +M +     +  +F AV+++C ++   + G+++
Sbjct: 290 DVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQI 348



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFT 454
           K G + +AR +FDKM+ R+ ++W ++I G  N     EA+ LF+ M      + D    +
Sbjct: 69  KQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMIS 128

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
             L AC  +G+      L +    K  ++      + ++D+  + G++ +   + + M T
Sbjct: 129 VALKACA-LGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMT 187

Query: 515 EPDLFVWGALLGACKNHG-NIE 535
             ++  W A++    + G N+E
Sbjct: 188 R-NVVSWTAIIAGLVHAGYNME 208


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 254/474 (53%), Gaps = 53/474 (11%)

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           D   + N+  + A+   +   G+ +E    + +M  +G+  + F  P  +KAC  + +I 
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI- 155

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
             +KIH L+ K     D F+ S+L++ Y K G +E A+  F+E+  +D+V  NAMV+GY 
Sbjct: 156 --KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYA 213

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD------------------QVM 298
           Q G     L     +    V P+  T    +S F+  GD                   V 
Sbjct: 214 QIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVA 273

Query: 299 VS-----------------KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE--AFDTFK 339
           VS                 ++F++MR K    D+ SW S++S  VH  C D         
Sbjct: 274 VSNSLIDMYGKCKCIEDALEIFEMMREK----DIFSWNSIVS--VHEQCGDHDGTLRLLD 327

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV--MGVEG----DLHVRSALVD 393
            ML  G  P   T++++LPAC+  A +  G+EIHG  IV  +G +G    D+ +++A++D
Sbjct: 328 RMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVID 387

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           MYAKCG + +A  +F++MS ++  +WN MI G   HGY +EA+E+F++M E + K D ++
Sbjct: 388 MYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVT 447

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  VL+AC H G V  G+     M+ KY + P  EHY C++D+LGRAG+L EAYE+  TM
Sbjct: 448 FVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTM 507

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             E +  VW ALL AC+ H +  LAE+AA+ + ELEPE   + +L++++Y   G
Sbjct: 508 PIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVG 561



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 184/460 (40%), Gaps = 81/460 (17%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +H  L   GL     I + L+  Y +   + HA++ F+E+P  ++  W A+   YA+ 
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G  +  +  F  M+ + +  + F +   L     + D+  G  IH   +K  + +   V 
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           +SLIDMY KC  +E A ++F+ M EKDI + N++VS + Q G     L L++ +    ++
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQ 335

Query: 278 PNVVTWNT---------------------LISGFSKSG---DQVMVSKLFQLMRAKG--- 310
           P++VT  T                     ++SG  K G   D V++      M AK    
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395

Query: 311 ----------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                        DV SW  +I G   +   +EA + F  M      P   T   +L AC
Sbjct: 396 RDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSAC 455

Query: 361 ASAANMRRGKEIHGCAIVMGVEGD----LHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
           + A  + +G+      + M  + D    +   + ++DM  + G + EA  L   M  E N
Sbjct: 456 SHAGFVSQGRNF---LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEAN 512

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
            V W +++  C  H +                       AVL            QR+F +
Sbjct: 513 PVVWRALLAACRLHKH-----------------------AVLAEVA-------AQRVFEL 542

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
             E          Y  M ++ G  GR  E  E+  TM  +
Sbjct: 543 EPE------HCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQ 576



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 126/253 (49%), Gaps = 13/253 (5%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+I+H   +  G      ++  LI  Y +C+ I  A  +F+ + + +I  W ++   
Sbjct: 253 LNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSV 312

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + + G H   + +   M   G++ ++  + +VL AC HL+ +  G +IH  ++    G D
Sbjct: 313 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKD 372

Query: 214 A------FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                   + +++IDMY+KCGS+  A  VF+ M  KD+ + N M+ GY   G   EAL +
Sbjct: 373 GKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEM 432

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK----LFQLMRAKGVEPDVVSWTSVIS 323
              +   ++KP+ VT+  ++S  S +G    VS+    L Q+     V P +  +T VI 
Sbjct: 433 FSRMCEVQLKPDEVTFVGVLSACSHAG---FVSQGRNFLVQMKSKYDVAPTIEHYTCVID 489

Query: 324 GLVHNFCNDEAFD 336
            L      DEA++
Sbjct: 490 MLGRAGQLDEAYE 502


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 252/477 (52%), Gaps = 40/477 (8%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R ++L  G  +H      G      + T L+  Y  C  I  AR++FD++   ++  W  
Sbjct: 134 RVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSI 193

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y + G   +A+ +F EM    ++ +  ++ +VL ACG   ++  G+ IH  +++++
Sbjct: 194 MIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENN 253

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D  + S+L+ MY+ CGS++ A                               LNL E
Sbjct: 254 IVVDPHLQSALVTMYASCGSMDLA-------------------------------LNLFE 282

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
           ++ TP+   N+V    +++G+SK G       +F  M    V+ D+V W+++ISG   + 
Sbjct: 283 KM-TPK---NLVASTAMVTGYSKLGQIENARSVFNQM----VKKDLVCWSAMISGYAESD 334

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
              EA + F EM S G  P   T+ S++ ACA    + + K IH      G  G L + +
Sbjct: 335 SPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINN 394

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKL 448
           AL++MYAKCG +  AR +FDKM  +N ++W  MI   A HG    A+  F+QME E  + 
Sbjct: 395 ALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEP 454

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           + ++F  VL AC H GLVE G+++F  M  ++ I P+  HY CMVDL GRA  L EA E+
Sbjct: 455 NGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALEL 514

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           ++ M   P++ +WG+L+ AC+ HG IEL E AAK L EL+P+    ++ L+++YA A
Sbjct: 515 VEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKA 571


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 162/508 (31%), Positives = 258/508 (50%), Gaps = 62/508 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ G  LH+ L  +G++    +   L+  Y +C ++  A ++F+   +TN+  W  +  A
Sbjct: 260 LQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVA 319

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + +     ++  +F +M   G++ N F  P +L+ C    +I  GE+IHSL +K  F +D
Sbjct: 320 FGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESD 379

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V   LIDMYSK G +EKA++V + + EKD+V+  +M++GYVQ     +AL   +E+  
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQK 439

Query: 274 PRVKP-----------------------------------NVVTWNTLISGFSKSGDQVM 298
             + P                                   +V  WN L++ +++ G    
Sbjct: 440 CGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIRE 499

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
               F+ +  K    D ++W  ++SG   +  ++EA   F  M   G      T  S L 
Sbjct: 500 AFSSFEEIEHK----DEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALS 555

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           A A+ A +++GK+IH   I  G   +  V +AL+ +Y KCG   +A+  F +MSERN V+
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS 615

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           WN++I  C+ HG   EA++ F+QM++                        G   F  M +
Sbjct: 616 WNTIITSCSQHGRGLEALDFFDQMKKE-----------------------GLSYFKSMSD 652

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           KY I PR +HYAC++D+ GRAG+L  A + ++ M    D  VW  LL ACK H NIE+ E
Sbjct: 653 KYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSACKVHKNIEVGE 712

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           +AAKHL ELEP  +A+ +LL++ YA  G
Sbjct: 713 LAAKHLLELEPHDSASYVLLSNAYAVTG 740



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 234/470 (49%), Gaps = 38/470 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HAQ    G    T +   LIT Y  C +   A  +F ++P  +   +  L   +A+
Sbjct: 162 GRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQ 221

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             + + A+ +F EM   GL  +   I S+L AC  L D+  G ++HS + K    +D  +
Sbjct: 222 CAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIM 281

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
             SL+D+Y KCG VE A  +F+     ++V  N ++  + Q     ++  L  ++ T  +
Sbjct: 282 EGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGI 341

Query: 277 KPNVVTWNTLI-----SGFSKSGDQV---------------------MVSKLFQLMRAKG 310
           +PN  T+  ++     +G    G+Q+                     M SK   L +A+ 
Sbjct: 342 RPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR 401

Query: 311 V-----EPDVVSWTSVISGLV-HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           V     E DVVSWTS+I+G V H +C D A   FKEM   G  P +  ++S +  CA   
Sbjct: 402 VLEMLKEKDVVSWTSMIAGYVQHEYCKD-ALAAFKEMQKCGIWPDNIGLASAISGCAGIK 460

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            MR+G +IH    V G  GD+ + +ALV++YA+CG I EA + F+++  ++ +TWN ++ 
Sbjct: 461 AMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVS 520

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKI 482
           G A  G  +EA+++F +M++   K +  +F + L+A  ++  ++ G+++   +++  +  
Sbjct: 521 GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF 580

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              TE    ++ L G+ G   +A      MS E +   W  ++ +C  HG
Sbjct: 581 --ETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHG 627



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 229/493 (46%), Gaps = 43/493 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA+ I  GL +   +   LI  Y++   +  AR +F+E+   +   W+A+   YA+ G 
Sbjct: 64  IHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +EA+ ++ +MH  G+    +V+ SVL +C        G  +H+   K  F ++ FV ++
Sbjct: 124 GEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNA 183

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LI +Y +CGS   A++VF +M  +D V  N ++SG+ Q      AL + EE+ +  + P+
Sbjct: 184 LITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPD 243

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD------------------------- 314
            VT ++L++  +  GD    ++L   +   G+  D                         
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFN 303

Query: 315 ------VVSWTSVISGLVHNFCND--EAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                 VV W  ++  +     ND  ++F+ F +M + G  P   T   IL  C     +
Sbjct: 304 LGNRTNVVLWNLIL--VAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEI 361

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G++IH  ++  G E D++V   L+DMY+K G++ +AR + + + E++ V+W SMI G 
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 427 ANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMP 484
             H YC +A+  F +M++     D++   + ++ C  +  +  G ++   +    Y    
Sbjct: 422 VQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYS--G 479

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
               +  +V+L  R GR+ EA+   + +    D   W  L+      G   L E A K  
Sbjct: 480 DVSIWNALVNLYARCGRIREAFSSFEEIE-HKDEITWNGLVSGFAQSG---LHEEALKVF 535

Query: 545 SELEPESAANNML 557
             ++     +N+ 
Sbjct: 536 MRMDQSGVKHNVF 548



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 183/385 (47%), Gaps = 47/385 (12%)

Query: 186 LKAC-GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           L+AC G+        +IH+  +    G D  V + LID+YSK G V  A++VF+E+  +D
Sbjct: 48  LRACRGNGRRWQVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARD 107

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEE------IGTPRVKPNVVT---------------- 282
            V+  AM+SGY Q GL  EAL L  +      + TP V  +V++                
Sbjct: 108 NVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHA 167

Query: 283 -------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
                         N LI+ + + G   +  ++F  M  +    D V++ ++ISG     
Sbjct: 168 QGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHR----DTVTFNTLISGHAQCA 223

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             + A + F+EM S G  P   TISS+L ACAS  ++++G ++H      G+  D  +  
Sbjct: 224 HGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEG 283

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           +L+D+Y KCG +  A  +F+  +  N V WN ++          ++ ELF QM+    + 
Sbjct: 284 SLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRP 343

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAY 506
           +  ++  +L  C   G ++LG+++ ++     K    ++ Y    ++D+  + G L +A 
Sbjct: 344 NQFTYPCILRTCTCTGEIDLGEQIHSL---SVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400

Query: 507 EMIKTMSTEPDLFVWGALLGACKNH 531
            +++ M  E D+  W +++     H
Sbjct: 401 RVLE-MLKEKDVVSWTSMIAGYVQH 424



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 19/246 (7%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A++ G  +HA++ VSG +    I   L+  Y  C  I  A   F+EI   +   W  L 
Sbjct: 460 KAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLV 519

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK--HS 209
             +A+ G H+EA+ VF  M   G+K N+F   S L A  +L++I  G++IH+ V+K  HS
Sbjct: 520 SGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHS 579

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F T+  V ++LI +Y KCGS E AK  F EM E++ V+ N +++   Q G   EAL+  +
Sbjct: 580 FETE--VGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFD 637

Query: 270 EIGTP------------RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
           ++                ++P    +  +I  F ++G      K  + M    +  D + 
Sbjct: 638 QMKKEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEM---PIAADAMV 694

Query: 318 WTSVIS 323
           W +++S
Sbjct: 695 WRTLLS 700


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 263/472 (55%), Gaps = 46/472 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA  + +GL     +  KL+    +  ++ +A  LFD+IPK +++ +      ++  
Sbjct: 5   KQIHAYSLRNGLDHTKFLIEKLL----QLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+      ++ +M  QG   N +    +  AC  L ++  G+ +HS   K  F +D F +
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAM 120

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L+DM                               Y + G+   A  L +E+      
Sbjct: 121 TALLDM-------------------------------YAKLGMLRSARQLFDEMPVR--- 146

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
            ++ TWN+LI+G+++SG      +LF  M  +    +V+SWT++ISG   N    +A + 
Sbjct: 147 -DIPTWNSLIAGYARSGHMEAALELFNKMPVR----NVISWTALISGYAQNGKYAKALEM 201

Query: 338 FKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
           F  + ++ G  P   +I+S+LPAC+    +  GK I   A   G   + +V +A+++++A
Sbjct: 202 FIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHA 261

Query: 397 KCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           +CG I EA+ +FD++ S+RN  +WN+MI G A HG C +A++L++QM  RK + D ++F 
Sbjct: 262 RCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFV 321

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L AC H G+V  G++LF  M+ K+++ P+ EHY C+VDLLGRAG L EAY +I+ M  
Sbjct: 322 GLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPM 381

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            PD  +WG LLGAC  HGN+EL E+AA+ L +LEP +  N ++L+++YA AG
Sbjct: 382 APDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAG 433



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 148/308 (48%), Gaps = 37/308 (12%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G++LH+    SG A      T L+  Y +   +  AR LFDE+P  +I  W +L   YAR
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160

Query: 157 RGYHQEAVTVFHEMHI--------------------------------QGLKQNIFVIPS 184
            G+ + A+ +F++M +                                +G K N   I S
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK- 243
           VL AC  L  +  G++I +    + F  +A+V +++++++++CG++E+A++VFDE+  K 
Sbjct: 221 VLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKR 280

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           ++ + N M+ G    G   +AL L +++   +++P+ VT+  L+   +  G      +LF
Sbjct: 281 NLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLF 340

Query: 304 QLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           + M +K  V P +  +  ++  L       EA++  + M      P S    ++L AC+ 
Sbjct: 341 ESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNM---PMAPDSVIWGTLLGACSF 397

Query: 363 AANMRRGK 370
             N+  G+
Sbjct: 398 HGNVELGE 405



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 101/225 (44%), Gaps = 16/225 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALT 151
           AL  GK + A    +G  +   ++  ++  +  C NI  A+ +FDEI  K N+  W  + 
Sbjct: 230 ALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMI 289

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSF 210
              A  G   +A+ ++ +M I+ ++ +      +L AC H   +  G ++  S+  K   
Sbjct: 290 MGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQV 349

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS-----GYVQRG-LATE 263
                    L+D+  + G +++A  +   M +  D V    ++      G V+ G +A E
Sbjct: 350 APKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAE 409

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           +L  +E    P    N V  + +   ++ +GD   V++L ++M+ 
Sbjct: 410 SLFKLE----PWNPGNYVILSNI---YALAGDWSGVARLRKMMKG 447


>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 674

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 245/440 (55%), Gaps = 9/440 (2%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           ++  AR +FD +P+ N+  W ++   Y +RG  ++ + +F  M  +G++ N   +   L 
Sbjct: 210 SVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALD 269

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC   S    G +IH+L++   F  D F+  S+I MYS+ G +  AK+ FD M +KDIV+
Sbjct: 270 ACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVS 329

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            N++++GYVQ  +  EA  L + +     + + V+W +++ GF+  G      +LF+ M 
Sbjct: 330 WNSLITGYVQHDMVEEAHVLFKLMH----QKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            K    D V+WT++IS  + N     A   F  M  +G  P +   S +L A AS A + 
Sbjct: 386 VK----DEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLN 441

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +G++ H  +I MG   D  V ++LV MYAKCG ++EA  +F  +S  + +  NSMI    
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFV 501

Query: 428 NHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG+ ++A++LF +M+    K +H++F  +LT C   G V+ G   F  M+  Y + P  
Sbjct: 502 QHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           EHY CMVDLLGRAG LAEA EMI +M        W ALL A   H N+  A+IAA+ L E
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLE 621

Query: 547 LEPESAANNMLLTDLYANAG 566
            +P  A    +L+ ++++AG
Sbjct: 622 KDPYDATAYTVLSRMFSSAG 641



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 217/488 (44%), Gaps = 91/488 (18%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+T Y     +  A++LFD++P  ++  W AL  AYA  G    A  VF +M  +     
Sbjct: 44  LLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             ++   L+A    +      K+ +         +A    ++I   +K   + +A+ V++
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPA--------KNAVSYGAIISGLAKAEMLHEAELVYE 155

Query: 239 EMV--EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           EM    +D V  NA+++GY++ G    AL + E + T R   +V++W+ ++ G  K G  
Sbjct: 156 EMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGM-TVR---DVISWSAMVDGLCKHGSV 211

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F  M     E +VVSWTS+I G V      +    F  M  +G    + T+S  
Sbjct: 212 SEARRVFDAMP----ERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVA 267

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+A+  R G +IH   I MG E D+ +  +++ MY++ G++ +A+  FD M +++ 
Sbjct: 268 LDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDI 327

Query: 417 VTWN-------------------------------SMIFGCANHGYCDEAIELFNQMEER 445
           V+WN                               SM+ G AN G+  E++ELF QM  +
Sbjct: 328 VSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVK 387

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYAC------------- 491
              D +++TA++++    G      R F  M QE  K  P T  ++C             
Sbjct: 388 ---DEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCK--PNTIAFSCLLSALASLAMLNQ 442

Query: 492 ----------------------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
                                 +V +  + GRLAEAY +  ++S  P L    +++ A  
Sbjct: 443 GRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFV 501

Query: 530 NHGNIELA 537
            HG +E A
Sbjct: 502 QHGFVEDA 509



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 151/331 (45%), Gaps = 25/331 (7%)

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L+  Y + G +  A+ +FD+M  +D+++  A+++ Y   G    A  + +++  PR 
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDM--PR- 97

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             N  +WN L+S + ++        LF  M AK    + VS+ ++ISGL       EA  
Sbjct: 98  -RNAPSWNALLSVYLRAARPRAAHALFYKMPAK----NAVSYGAIISGLAKAEMLHEAEL 152

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMY 395
            ++EM  Q   P  +           A  +R G+      +  G+   D+   SA+VD  
Sbjct: 153 VYEEMPWQWRDPVGSN-------ALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFT 454
            K G +SEAR +FD M ERN V+W SMI G    G C + + LF N   E  +++  + +
Sbjct: 206 CKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLS 265

Query: 455 AVLTACCHVGLVELGQRLFNM---MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
             L AC    L   G ++ N+   M  +  I         ++ +  R G + +A      
Sbjct: 266 VALDACAAASLAREGIQIHNLIISMGFELDIFLGDS----IIIMYSRFGWMVDAKRAFDC 321

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           M  + D+  W +L+     H  +E A +  K
Sbjct: 322 MQ-QKDIVSWNSLITGYVQHDMVEEAHVLFK 351


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 1135

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 172/533 (32%), Positives = 277/533 (51%), Gaps = 68/533 (12%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +HA  + +G  R T     L+T Y     ++ A+ LF      ++  W  +  + ++
Sbjct: 453 GKQVHAYTLRNGDLR-TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQ 511

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFGTDAF 215
               +EA+   + M + G++ +   + SVL AC  L  +  G +IH   L++     ++F
Sbjct: 512 NDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF 571

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL-VEEIGTP 274
           V ++L+DMY  C   +K + VFD +V + +   NA+++GY +     +AL L VE I   
Sbjct: 572 VGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISES 631

Query: 275 RVKPNVVTW-----------------------------------NTLISGFSKSGDQVMV 299
              PN  T+                                   N L+  +S+ G   + 
Sbjct: 632 EFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEIS 691

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISG------------LVHNFC---NDEAFDTFKEMLSQ 344
             +F  M  +    D+VSW ++I+G            L+H       ++  DTF +    
Sbjct: 692 KTIFGRMNKR----DIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDD 747

Query: 345 G---FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
           G   F P S T+ ++LP CA+ A + +GKEIH  A+   +  D+ V SALVDMYAKCG +
Sbjct: 748 GGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCL 807

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-------EERKKLDHLSFT 454
           + A  +FD+M  RN +TWN +I     HG  +EA+ELF  M        E  + + +++ 
Sbjct: 808 NLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYI 867

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           A+  AC H G+V+ G  LF+ M+  + + PR +HYAC+VDLLGR+GR+ EAYE+I TM +
Sbjct: 868 AIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPS 927

Query: 515 EPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             + +  W +LLGAC+ H ++E  EIAAKHL  LEP  A++ +L++++Y++AG
Sbjct: 928 NLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAG 980



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 228/496 (45%), Gaps = 58/496 (11%)

Query: 97  GKILHAQLIVSGLARLTQIA--TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           GK +HA +   G A  + +A    L+  Y +C ++  AR +FD+IP  +   W ++    
Sbjct: 349 GKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATL 408

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL-SDIGTGEKIHSLVLKHSFGTD 213
            R    + ++ +F  M  + +    F + SV  AC H+   +  G+++H+  L++     
Sbjct: 409 CRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLR 467

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +  ++L+ MY++ G V  AK +F     KD+V+ N ++S   Q     EAL  V  +  
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIV 527

Query: 274 PRVKPNVVTWNTLISGFS----------------KSGDQVMVS----------------K 301
             V+P+ VT  +++   S                ++GD +  S                K
Sbjct: 528 DGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPK 587

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPAC 360
             +L+    V   V  W ++++G   N  +D+A   F EM+S+  FCP + T +S+LPAC
Sbjct: 588 KGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPAC 647

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
                    + IHG  +  G   D +V++AL+DMY++ G +  ++T+F +M++R+ V+WN
Sbjct: 648 VRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWN 707

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-------------------KLDHLSFTAVLTACC 461
           +MI GC   G  D+A+ L ++M+ R+                   K + ++   VL  C 
Sbjct: 708 TMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCA 767

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
            +  +  G+ + +    K K+       + +VD+  + G L  A  +   M    ++  W
Sbjct: 768 ALAALGKGKEI-HAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITW 825

Query: 522 GALLGACKNHGNIELA 537
             L+ A   HG  E A
Sbjct: 826 NVLIMAYGMHGKGEEA 841



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 201/427 (47%), Gaps = 40/427 (9%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           + + +  +WI L  +       ++A++ +  M       + F  P+VLKA   + D+  G
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLG 349

Query: 199 EKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
           ++IH+ V K  H+  +   V +SL++MY KCG +  A++VFD++ ++D V+ N+M++   
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 257 QRGLATEALNLVEEIGTPRVKPNVVTWNTL------ISGFSKSGDQV------------- 297
           +      +L+L   + +  V P   T  ++      + G  + G QV             
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTY 469

Query: 298 -------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                  M ++L ++  AK +       D+VSW +VIS L  N   +EA      M+  G
Sbjct: 470 TNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG 529

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISE 403
             P   T++S+LPAC+    +R G+EIH  A+  G  +E    V +ALVDMY  C    +
Sbjct: 530 VRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSF-VGTALVDMYCNCKQPKK 588

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACC 461
            R +FD +  R    WN+++ G A + + D+A+ LF +M    +   +  +F +VL AC 
Sbjct: 589 GRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACV 648

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
              +    + +   + ++     +    A M D+  R GR+  +  +   M+   D+  W
Sbjct: 649 RCKVFSDKEGIHGYIVKRGFGKDKYVQNALM-DMYSRMGRVEISKTIFGRMNKR-DIVSW 706

Query: 522 GALLGAC 528
             ++  C
Sbjct: 707 NTMITGC 713



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 173/401 (43%), Gaps = 70/401 (17%)

Query: 94  LQSGKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L+ G+ +H   + +G L   + + T L+  Y  C+     R++FD + +  +  W AL  
Sbjct: 550 LRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLA 609

Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            YAR  +  +A+ +F EM  +     N     SVL AC         E IH  ++K  FG
Sbjct: 610 GYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFG 669

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D +V ++L+DMYS+ G VE +K +F  M ++DIV+ N M++G +  G   +ALNL+ E+
Sbjct: 670 KDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEM 729

Query: 272 -------------------GTPRVKPNVVTWNTLISG----------------------- 289
                              G P  KPN VT  T++ G                       
Sbjct: 730 QRRQGEDGSDTFVDYEDDGGVP-FKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLA 788

Query: 290 ------------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
                       ++K G   + S++F  M  +    +V++W  +I     +   +EA + 
Sbjct: 789 MDVAVGSALVDMYAKCGCLNLASRVFDQMPIR----NVITWNVLIMAYGMHGKGEEALEL 844

Query: 338 FKEMLSQG------FCPTSATISSILPACASAANMRRGKEI-HGCAIVMGVEGDLHVRSA 390
           F+ M + G        P   T  +I  AC+ +  +  G  + H      GVE      + 
Sbjct: 845 FRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYAC 904

Query: 391 LVDMYAKCGFISEARTLFDKM-SERNTV-TWNSMIFGCANH 429
           LVD+  + G + EA  L + M S  N V  W+S++  C  H
Sbjct: 905 LVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIH 945



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 33/300 (11%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R +     + +H  ++  G  +   +   L+  Y+    +  ++ +F  + K +I  W 
Sbjct: 648 VRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWN 707

Query: 149 ALTGAYARRGYHQEAVTVFHEMHI-QG-----------------LKQNIFVIPSVLKACG 190
            +       G + +A+ + HEM   QG                  K N   + +VL  C 
Sbjct: 708 TMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCA 767

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            L+ +G G++IH+  +K     D  V S+L+DMY+KCG +  A +VFD+M  ++++  N 
Sbjct: 768 ALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNV 827

Query: 251 MVSGYVQRGLATEALNLVEEI----GTPR--VKPNVVTWNTLISGFSKSGDQVMVSK--- 301
           ++  Y   G   EAL L   +    G+ R  ++PN VT+  + +  S SG   MV +   
Sbjct: 828 LIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSG---MVDEGLH 884

Query: 302 LFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           LF  M+A  GVEP    +  ++  L  +    EA++    M S          SS+L AC
Sbjct: 885 LFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSN--LNKVDAWSSLLGAC 942



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 23/280 (8%)

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           +V   N+L++ + K GD     ++F  +  +    D VSW S+I+ L      + +   F
Sbjct: 366 SVAVANSLVNMYGKCGDLTAARQVFDDIPDR----DHVSWNSMIATLCRFEEWELSLHLF 421

Query: 339 KEMLSQGFCPTSATISSILPACASA-ANMRRGKEIHGCAIVMGVEGDL--HVRSALVDMY 395
           + MLS+   PTS T+ S+  AC+     +R GK++H   +     GDL  +  +ALV MY
Sbjct: 422 RLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLR---NGDLRTYTNNALVTMY 478

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI-ELFNQMEERKKLDHLSFT 454
           A+ G +++A+ LF     ++ V+WN++I   + +   +EA+  ++  + +  + D ++  
Sbjct: 479 ARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLA 538

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL-----GRAGRLAEAYEMI 509
           +VL AC  +  + +G+ +         ++  +     +VD+       + GRL     + 
Sbjct: 539 SVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVR 598

Query: 510 KTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHLSELE 548
           +T++      VW ALL G  +N  + +   +  + +SE E
Sbjct: 599 RTVA------VWNALLAGYARNEFDDQALRLFVEMISESE 632



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 9/225 (4%)

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W  ++    H+    +A  T+  ML+    P +    ++L A A+  ++  GK+IH    
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVF 357

Query: 378 VMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
             G      + V ++LV+MY KCG ++ AR +FD + +R+ V+WNSMI         + +
Sbjct: 358 KFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELS 417

Query: 436 IELFNQMEERKKLDHLSFT--AVLTACCHV-GLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           + LF  M   + +D  SFT  +V  AC HV G V LG+++         +  RT     +
Sbjct: 418 LHLFRLMLS-ENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDL--RTYTNNAL 474

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           V +  R GR+ +A  +      + DL  W  ++ +   +   E A
Sbjct: 475 VTMYARLGRVNDAKALFGVFDGK-DLVSWNTVISSLSQNDRFEEA 518


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 175/523 (33%), Positives = 272/523 (52%), Gaps = 57/523 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP---KTNIHRWIAL 150
           L  GK LH  L+ +         T LI  Y++C  I H+  +F+  P     N+  + AL
Sbjct: 45  LSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFN-FPTHHNKNVFAYNAL 103

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +      Q A+ ++++M   G+  + F  P V++ACG   D     KIH L+ K   
Sbjct: 104 IAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGL 163

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D FV S+L++ Y K   V +A +VF+E+  +D+V  NAMV+G+ Q G   EAL +   
Sbjct: 164 ELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRR 223

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGD------------------QVMVSK----------- 301
           +G   V P   T   ++S FS  GD                   V+VS            
Sbjct: 224 MGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKC 283

Query: 302 ------LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE--AFDTFKEML-SQGFCPTSAT 352
                 +F++M     E D+ SW S++S  VH  C D       F  M+ S    P   T
Sbjct: 284 VGDALSVFEMMD----EIDIFSWNSIMS--VHERCGDHYGTLRLFDRMMGSSRVQPDLVT 337

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMG--------VEGDLHVRSALVDMYAKCGFISEA 404
           ++++LPAC   A +  G+EIHG  +V G        V  D+ + +AL+DMYAKCG + +A
Sbjct: 338 VTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDA 397

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHV 463
           R +F  M E++  +WN MI G   HGY  EA+++F++M + + + + +SF  +L+AC H 
Sbjct: 398 RMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHA 457

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
           G+V+ G    + M+ KY + P  EHY C++D+L RAG+L EAY+++ TM  + D   W +
Sbjct: 458 GMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRS 517

Query: 524 LLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           LL AC+ H + +LAE+AA  + ELEP+   N +L++++Y   G
Sbjct: 518 LLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVG 560



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 190/411 (46%), Gaps = 50/411 (12%)

Query: 168 HEMHIQGLKQ-NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
           H  H +G    ++    + L++C H +++  G+++H+ +LK++F      ++SLI+MYSK
Sbjct: 17  HHHHCRGFSTYDLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSK 76

Query: 227 CGSVEKAKKVFDEMV--EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284
           C  ++ + +VF+      K++ A NA+++G++   L   AL L  ++    + P+  T+ 
Sbjct: 77  CSLIDHSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFP 136

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVE-------------------------------P 313
            +I       D  +V+K+  LM   G+E                                
Sbjct: 137 CVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVR 196

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           DVV W ++++G       +EA   F+ M   G  P   T++ +L   +   +   G+ +H
Sbjct: 197 DVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVH 256

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
           G    MG E  + V +AL+DMY KC  + +A ++F+ M E +  +WNS++   + H  C 
Sbjct: 257 GFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIM---SVHERCG 313

Query: 434 E---AIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM-------QEKYK 481
           +    + LF++M    R + D ++ T VL AC H+  +  G+ +   M       +E + 
Sbjct: 314 DHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHD 373

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +         ++D+  + G + +A  M+     E D+  W  ++     HG
Sbjct: 374 VFDDVLLNNALMDMYAKCGNMRDA-RMVFVNMREKDVASWNIMITGYGMHG 423


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 168/537 (31%), Positives = 279/537 (51%), Gaps = 65/537 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYT--ECQNIHHARMLFDEIPKTNIHRWIA 149
           +++   K +H+Q I +GL     +  ++I F    E  ++ +ARM+FD +P  N   W  
Sbjct: 30  KSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNN 89

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y+R G    AV+++ EM  +G+  + +  P +LK     + +  G ++H  ++K  
Sbjct: 90  MIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLG 149

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F ++ FV ++LI +YS  G V  A+ VFD   + D+V  N M+SGY +     E++ L +
Sbjct: 150 FSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFD 209

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP---------------- 313
           E+   RV P+ +T  +++S  SK  D  +  ++ + ++   +EP                
Sbjct: 210 EMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACG 269

Query: 314 ---------------DVVSWTSVIS--------GLVHNFCN------------------- 331
                          DV+SWT++++        GL  N+ +                   
Sbjct: 270 DMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQ 329

Query: 332 ----DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                E    F+EM +    P   T+ SIL ACA    +  G+ I        ++ D  V
Sbjct: 330 VNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFV 389

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
            +AL+DMY  CG + +A  +F+ M  R+ ++W ++IFG A +GY +EA+++F+QM +   
Sbjct: 390 GNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASI 449

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
             D ++   VL AC H G+V+ G++ F  M  ++ I P   HY CMVDLLGRAG L EA+
Sbjct: 450 TPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAH 509

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           E+IK M  +P+  VWG+LLGAC+ H + E+AE+AA+ + ELEPE+ A  +LL ++YA
Sbjct: 510 EVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYA 566


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 270/505 (53%), Gaps = 34/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H  +I  G      +   LIT Y +C +I  AR++FD +P+ +   W A+   
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y       E + +F  M    +  ++  + SV+ AC  L D   G ++H  V+K  F  +
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAE 330

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +SLI M+S  G  ++A+ VF +M  KD+V+  AM+SGY + GL  +A+     +  
Sbjct: 331 VSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEH 390

Query: 274 PRVKPNVVTWNTLISGFSKSG------------DQV--------------MVSKLFQLMR 307
             V P+ +T  +++S  +  G            D+               M SK   + +
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A  V       +V+SWTS+I GL  N+ + EA   F++M+     P S T+ S+L ACA 
Sbjct: 451 ALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACAR 509

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GKEIH  A+  G+  D  + +AL+DMY +CG +  A   F+   E++  +WN +
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNIL 568

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           + G A  G    A+ELF++M E     D ++FT++L AC   G+V  G   F  M+ K+ 
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFH 628

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  +HYA +VDLLGRAGRL +AYE IK M  +PD  +WGALL AC+ + N+EL E+AA
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAA 688

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           +H+ E++ +S    +LL +LYA++G
Sbjct: 689 QHIFEMDTKSVGYYILLCNLYADSG 713



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 245/505 (48%), Gaps = 46/505 (9%)

Query: 92  RALQSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           RA   G  +H+  +   + RL  ++   L++ +    ++  A  +F ++ + ++  W  L
Sbjct: 108 RAASEGSRVHS-YVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVL 166

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
            G YA+ GY  EA+ ++H M   G++ +++  P VL+ CG L D+  G ++H  V+++ F
Sbjct: 167 VGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGF 226

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +D  VV++LI MY KCG +  A+ VFD M  +D ++ NAM+SGY +  +  E L L   
Sbjct: 227 ESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFM 286

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVM-------------------VSKLFQLMRAKGV 311
           +    V P+++T  ++IS     GD+ +                    + L Q+  + G 
Sbjct: 287 MREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGC 346

Query: 312 E------------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                         D+VSWT++ISG   N   ++A +T+  M  +G  P   TI+S+L A
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA    + +G  +H  A   G+   + V ++L+DMY+KC  I +A  +F ++  +N ++W
Sbjct: 407 CAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISW 466

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
            S+I G   +    EA+  F QM    K + ++  +VL+AC  +G +  G+ +       
Sbjct: 467 TSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRT 526

Query: 480 ----YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
                  +P       ++D+  R GR+  A+      S E D+  W  LL      G   
Sbjct: 527 GLGFDGFLPNA-----LLDMYVRCGRMEPAWNQFN--SCEKDVASWNILLTGYAQQGKGG 579

Query: 536 LA-EIAAKHL-SELEPESAANNMLL 558
           LA E+  K + S++ P+      LL
Sbjct: 580 LAVELFHKMIESDVNPDEITFTSLL 604



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 40/322 (12%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           ++L+ C        G ++HS V K        + ++L+ M+ + G + +A  VF +M E+
Sbjct: 99  ALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAER 158

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW-------------------- 283
           D+ + N +V GY + G   EALNL   +    ++P+V T+                    
Sbjct: 159 DLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVH 218

Query: 284 ---------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                          N LI+ + K GD      +F  M  +    D +SW ++ISG   N
Sbjct: 219 LHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR----DRISWNAMISGYFEN 274

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               E    F  M      P   T++S++ AC +  + R G+E+HG  I  G   ++ V 
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           ++L+ M++  G   EA  +F KM  ++ V+W +MI G   +G  ++A+E +  ME    +
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVV 394

Query: 449 -DHLSFTAVLTACCHVGLVELG 469
            D ++  +VL+AC  +GL++ G
Sbjct: 395 PDEITIASVLSACAGLGLLDKG 416



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 12/252 (4%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  AL  GK +HA  + +GL     +   L+  Y  C  +  A   F+   K ++  W  
Sbjct: 509 RIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNI 567

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKH 208
           L   YA++G    AV +FH+M    +  +     S+L AC     +  G E   S+  K 
Sbjct: 568 LLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKF 627

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEA 264
               +    +S++D+  + G +E A +   +M ++ D     A+++    Y    L   A
Sbjct: 628 HIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELA 687

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVIS 323
              + E+ T  V   ++  N     ++ SG    V+++ ++MR   +  D   SW  V +
Sbjct: 688 AQHIFEMDTKSVGYYILLCNL----YADSGKWDEVARVRKIMRENRLTVDPGCSWVEV-A 742

Query: 324 GLVHNFCNDEAF 335
           G VH F   + F
Sbjct: 743 GQVHAFLTGDDF 754



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 5/178 (2%)

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T  ++L  C        G  +H           + + +AL+ M+ + G + EA  +F KM
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ 470
           +ER+  +WN ++ G A  GY DEA+ L+++M     + D  +F  VL  C   GL +L +
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCG--GLPDLAR 213

Query: 471 -RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            R  ++   +Y      +    ++ +  + G +  A  +   M    D   W A++  
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR-DRISWNAMISG 270


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 270/505 (53%), Gaps = 34/505 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ +H  +I  G      +   LIT Y +C +I  AR++FD +P+ +   W A+   
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y       E + +F  M    +  ++  + SV+ AC  L D   G ++H  V+K  F  +
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAE 330

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +SLI M+S  G  ++A+ VF +M  KD+V+  AM+SGY + GL  +A+     +  
Sbjct: 331 VSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEH 390

Query: 274 PRVKPNVVTWNTLISGFSKSG------------DQV--------------MVSKLFQLMR 307
             V P+ +T  +++S  +  G            D+               M SK   + +
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A  V       +V+SWTS+I GL  N+ + EA   F++M+     P S T+ S+L ACA 
Sbjct: 451 ALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACAR 509

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GKEIH  A+  G+  D  + +AL+DMY +CG +  A   F+   E++  +WN +
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNIL 568

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           + G A  G    A+ELF++M E     D ++FT++L AC   G+V  G   F  M+ K+ 
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFH 628

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  +HYA +VDLLGRAGRL +AYE IK M  +PD  +WGALL AC+ + N+EL E+AA
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAA 688

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           +H+ E++ +S    +LL +LYA++G
Sbjct: 689 QHIFEMDTKSVGYYILLCNLYADSG 713



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 245/505 (48%), Gaps = 46/505 (9%)

Query: 92  RALQSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           RA   G  +H+  +   + RL  ++   L++ +    ++  A  +F ++ + ++  W  L
Sbjct: 108 RAASEGSRVHS-YVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVL 166

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
            G YA+ GY  EA+ ++H M   G++ +++  P VL+ CG L D+  G ++H  V+++ F
Sbjct: 167 VGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGF 226

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +D  VV++LI MY KCG +  A+ VFD M  +D ++ NAM+SGY +  +  E L L   
Sbjct: 227 ESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFM 286

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVM-------------------VSKLFQLMRAKGV 311
           +    V P+++T  ++IS     GD+ +                    + L Q+  + G 
Sbjct: 287 MREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGC 346

Query: 312 E------------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                         D+VSWT++ISG   N   ++A +T+  M  +G  P   TI+S+L A
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA    + +G  +H  A   G+   + V ++L+DMY+KC  I +A  +F ++  +N ++W
Sbjct: 407 CAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISW 466

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
            S+I G   +    EA+  F QM    K + ++  +VL+AC  +G +  G+ +       
Sbjct: 467 TSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRT 526

Query: 480 ----YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
                  +P       ++D+  R GR+  A+      S E D+  W  LL      G   
Sbjct: 527 GLGFDGFLPNA-----LLDMYVRCGRMEPAWNQFN--SCEKDVASWNILLTGYAQQGKGG 579

Query: 536 LA-EIAAKHL-SELEPESAANNMLL 558
           LA E+  K + S++ P+      LL
Sbjct: 580 LAVELFHKMIESDVNPDEITFTSLL 604



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 40/322 (12%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           ++L+ C        G ++HS V K        + ++L+ M+ + G + +A  VF +M E+
Sbjct: 99  ALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAER 158

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW-------------------- 283
           D+ + N +V GY + G   EALNL   +    ++P+V T+                    
Sbjct: 159 DLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVH 218

Query: 284 ---------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                          N LI+ + K GD      +F  M  +    D +SW ++ISG   N
Sbjct: 219 LHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR----DRISWNAMISGYFEN 274

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               E    F  M      P   T++S++ AC +  + R G+E+HG  I  G   ++ V 
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           ++L+ M++  G   EA  +F KM  ++ V+W +MI G   +G  ++A+E +  ME    +
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVV 394

Query: 449 -DHLSFTAVLTACCHVGLVELG 469
            D ++  +VL+AC  +GL++ G
Sbjct: 395 PDEITIASVLSACAGLGLLDKG 416



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 12/252 (4%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  AL  GK +HA  + +GL     +   L+  Y  C  +  A   F+   K ++  W  
Sbjct: 509 RIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNI 567

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKH 208
           L   YA++G    AV +FH+M    +  +     S+L AC     +  G E   S+  K 
Sbjct: 568 LLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKF 627

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEA 264
               +    +S++D+  + G +E A +   +M ++ D     A+++    Y    L   A
Sbjct: 628 HIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELA 687

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVIS 323
              + E+ T  V   ++  N     ++ SG    V+++ ++MR   +  D   SW  V +
Sbjct: 688 AQHIFEMDTKSVGYYILLCNL----YADSGKWDEVARVRKIMRENRLTVDPGCSWVEV-A 742

Query: 324 GLVHNFCNDEAF 335
           G VH F   + F
Sbjct: 743 GQVHAFLTGDDF 754



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           T  ++L  C        G  +H           + + +AL+ M+ + G + EA  +F KM
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ 470
           +ER+  +WN ++ G A  GY DEA+ L+++M     + D  +F  VL  C   GL +L +
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCG--GLPDLAR 213

Query: 471 -RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            R  ++   +Y      +    ++ +  + G +  A  +   M    D   W A++
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR-DRISWNAMI 268


>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
 gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 213/342 (62%), Gaps = 2/342 (0%)

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT 282
           MY K   +  ++ +FD M  K+IVA N+++SGY  +G    A  L+  +    +KP+++T
Sbjct: 1   MYVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLIT 60

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
           WN+L++G+S  G       L   ++  G+ P+VVSWT++ISG   N    E+ + F +M 
Sbjct: 61  WNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQ 120

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
            +G  P SATISS+L  C   + +++GKEIH  +I      DL+V +AL+D Y+K G + 
Sbjct: 121 EEGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSKSGDLE 180

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACC 461
            A  +F   +E+   +WN MI G A +G   E I L + M+    L D ++FTA+L+ C 
Sbjct: 181 SAHKVF-WSAEKTLASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCK 239

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
           + GLVE G + F+MM   Y I P  EHY+CM DLLGRAG L EA++ I+TM  +PD  VW
Sbjct: 240 NSGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVW 299

Query: 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           GA+LG+C+ HGNIE AEIAAK L +LEP ++AN +L+  LYA
Sbjct: 300 GAMLGSCRIHGNIEFAEIAAKELFKLEPYNSANYVLMLSLYA 341



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           N+  W AL    ++ G + E++  F +M  +G+K N   I S+L+ CG LS +  G++IH
Sbjct: 92  NVVSWTALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLLRTCGGLSLLQKGKEIH 151

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
            L ++ SF  D +V ++LID YSK G +E A KVF    EK + + N M+ G+   G   
Sbjct: 152 CLSIRKSFIEDLYVATALIDTYSKSGDLESAHKVF-WSAEKTLASWNCMIMGFAINGCGR 210

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSV 321
           E + L++ +    + P+ +T+  L+SG   SG      K F +M    G++P +  ++ +
Sbjct: 211 EVIALLDGMQRAGILPDAITFTALLSGCKNSGLVEEGWKCFDMMSNDYGIKPTIEHYSCM 270

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
              L      DEA+D  + M  +   P ++   ++L +C    N+
Sbjct: 271 ADLLGRAGYLDEAWDFIQTMPIK---PDASVWGAMLGSCRIHGNI 312


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 260/456 (57%), Gaps = 20/456 (4%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + T +++ Y +   I  A  LF+E+P  N+  W  +   YAR G  QEA+ +F  M    
Sbjct: 110 VWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMP--- 166

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
            ++N+    +V+ A  H   I   E++ + + +     D    ++++   SK G V+ A+
Sbjct: 167 -ERNVVSWNTVMTALAHCGRIDDAERLFNEMRER----DVVSWTTMVAGLSKNGRVDAAR 221

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           +VFD+M  +++V+ NAM++GY Q G   EAL L E +   R  P   +WNT+++GF ++G
Sbjct: 222 EVFDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERM-PERDMP---SWNTMVTGFIQNG 277

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATI 353
           D     +LF  M  K    +V++WT++++G V +  ++EA   F +M  + G  PT+ T 
Sbjct: 278 DLNRAEQLFHAMPQK----NVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTF 333

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK--M 411
            ++L AC+  A +  G++IH        +   +V SAL++MY+KCG    A+ +FD    
Sbjct: 334 VTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLS 393

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ 470
              + + WN MI   A+HGY +EAI LFN+M+E   + + +++  +LTAC H GL + G 
Sbjct: 394 GHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGF 453

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
           + F+ + +   I  R +HY C++DL GRAGRL EA  +I+ +  E  L +WGALL  C  
Sbjct: 454 KYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSV 513

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           HGN ++ ++ A  + ++EPE+A   +L +++YA+ G
Sbjct: 514 HGNADIGKLVADKVLKMEPENADTYLLASNMYASVG 549



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 181/407 (44%), Gaps = 58/407 (14%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           ++ AR +FDE+ K +   W  +   Y + G   EA  +F               P   K+
Sbjct: 61  VNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDR-------------PDAQKS 107

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
                                      V ++++  Y K   +E+A+++F+EM  +++V+ 
Sbjct: 108 -------------------------VIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSW 142

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           N M+ GY + G   EAL+L   +     + NVV+WNT+++  +  G      +LF  MR 
Sbjct: 143 NTMIDGYARNGRTQEALDLFGRMP----ERNVVSWNTVMTALAHCGRIDDAERLFNEMR- 197

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
              E DVVSWT++++GL  N   D A + F +M      P    +S        A N R 
Sbjct: 198 ---ERDVVSWTTMVAGLSKNGRVDAAREVFDKM------PIRNVVSWNAMIAGYAQNGRF 248

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
            + +         E D+   + +V  + + G ++ A  LF  M ++N +TW +M+ G   
Sbjct: 249 DEALK--LFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQ 306

Query: 429 HGYCDEAIELFNQMEERKKLDHL--SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
           HG  +EA++LFN+M+    L     +F  VL AC  +  +  GQ++  M+  K      T
Sbjct: 307 HGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMIS-KTVFQEST 365

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKT-MSTEPDLFVWGALLGACKNHG 532
              + ++++  + G    A +M    +S   DL  W  ++ A  +HG
Sbjct: 366 YVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHG 412



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 7/151 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE--IPKTNIHRWIAL 150
            L  G+ +H  +  +     T + + LI  Y++C + H A+ +FD+      ++  W  +
Sbjct: 345 GLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGM 404

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             AYA  GY  EA+ +F++M   G + N      +L AC H      G K    +LK+ +
Sbjct: 405 IAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRY 464

Query: 211 ---GTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
                D +  + LID+  + G +++A  + +
Sbjct: 465 IQVREDHY--TCLIDLCGRAGRLDEALNIIE 493


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 164/491 (33%), Positives = 259/491 (52%), Gaps = 41/491 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE-MHIQ 173
           + +  I  Y E   +  AR +FD   + N   W  + G Y +     EA+ +F + M  +
Sbjct: 257 VVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESE 316

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
               +     S L A   L  +  G ++H+ +LK S      +++++I MYS+CGS+  +
Sbjct: 317 QFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTS 376

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS----- 288
            KVF  M+E+D+V  N MVS +VQ GL  E L LV E+       + VT   L+S     
Sbjct: 377 FKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNL 436

Query: 289 -----------------------------GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                                         ++KSG      +LF+  +    + D  +W 
Sbjct: 437 RSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLITTAQQLFE--KNSXYDRDEATWN 494

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++I+G   N  ++E F  F++M+ Q   P + T++SILPAC     +  GK+IHG AI  
Sbjct: 495 AMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRC 554

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
            +  ++ V +AL+DMY+K G I+ A  +F +  E+N+VT+ +MI     HG  + A+ LF
Sbjct: 555 FLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLF 614

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           + M     K D ++F A+L+AC + GLV+ G R+F  M+ +YKI P +EHY C+ D+LGR
Sbjct: 615 HAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGR 674

Query: 499 AGRLAEAYEMIKTMSTEPDLF-VWGALLGACKNHGNIELAEIAAKHLSELEPES--AANN 555
            GR+ EAYE +K +  E + F +WG+LLGAC+ HG  EL ++ A  L E+E  S     +
Sbjct: 675 VGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYH 734

Query: 556 MLLTDLYANAG 566
           +LL+++YA  G
Sbjct: 735 VLLSNIYAAEG 745



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 202/446 (45%), Gaps = 59/446 (13%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC-------------Q 127
           +S  ++   + R+L+ GK LH  ++ S       +   L+  Y+ C              
Sbjct: 107 FSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFN 166

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           N    R +FD + K N+  W  +   Y +     EA  +F  M   G++       +V  
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 188 ACGHLSDIGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           A   ++D      ++ LV+K    +  D FVVSS I MY++ G V+ A+++FD  +E++ 
Sbjct: 227 AVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 246 VAMNAMVSGYVQRGLATEALNLVEE----------------------------------- 270
              N M+ GYVQ     EA++L  +                                   
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHA 346

Query: 271 -IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            I        VV  N +I  +S+ G      K+F  M    +E DVV+W +++S  V N 
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM----LERDVVTWNTMVSAFVQNG 402

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
            +DE      EM  QGF   S T++++L   ++  +   GK+ H   I  G++ +  +  
Sbjct: 403 LDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDG 461

Query: 390 ALVDMYAKCGFISEARTLFDKMS--ERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
            L+DMYAK G I+ A+ LF+K S  +R+  TWN+MI G   +G  +E   +F +M E+  
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRL 472
           + + ++  ++L AC  +G + LG+++
Sbjct: 522 RPNAVTLASILPACNPMGTIGLGKQI 547



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 196/453 (43%), Gaps = 52/453 (11%)

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKA 188
           H A  LFD IP+     W  +   +       +A+  +  M      K + +   S LKA
Sbjct: 54  HQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKA 113

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC-------------GSVEKAKK 235
           C     +  G+ +H  VL+  FG+   V +SL++MYS C              + +  ++
Sbjct: 114 CAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRR 173

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           VFD M ++++VA N M+S YV+     EA  +   +    ++P  V++  +     +  D
Sbjct: 174 VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMND 233

Query: 296 QVMVSKLFQLMRAKG---------------------------------VEPDVVSWTSVI 322
               + L+ L+   G                                 +E +   W ++I
Sbjct: 234 YDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 323 SGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
            G V N C  EA D F +++ S+ F     T  S L A +    +  G+++H   +    
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSST 353

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
              + + +A++ MY++CG I  +  +F  M ER+ VTWN+M+     +G  DE + L  +
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFE 413

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M+++   +D ++ TA+L+   ++   E+G++    +          + Y  ++D+  ++G
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGY--LIDMYAKSG 471

Query: 501 RLAEAYEMIKTMST-EPDLFVWGALLGACKNHG 532
            +  A ++ +  S  + D   W A++     +G
Sbjct: 472 LITTAQQLFEKNSXYDRDEATWNAMIAGYTQNG 504



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/502 (22%), Positives = 206/502 (41%), Gaps = 70/502 (13%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
           S  F L    +   +    + + L  G+ LHA ++ S       I   +I  Y+ C +I 
Sbjct: 315 SEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIG 374

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            +  +F  + + ++  W  +  A+ + G   E + +  EM  QG   +   + ++L    
Sbjct: 375 TSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLAS 434

Query: 191 HLSDIGTGEKIHSLVLKHSF---GTDAFVVSSLIDMYSKCGSVEKAKKVFDE--MVEKDI 245
           +L     G++ H+ +++H     G D +    LIDMY+K G +  A+++F++    ++D 
Sbjct: 435 NLRSQEIGKQAHAYLIRHGIQFEGMDGY----LIDMYAKSGLITTAQQLFEKNSXYDRDE 490

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL---------------ISGF 290
              NAM++GY Q GL+ E   +  ++    V+PN VT  ++               I GF
Sbjct: 491 ATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGF 550

Query: 291 --------------------SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                               SKSG       +F    A+ +E + V++T++I     +  
Sbjct: 551 AIRCFLNQNVFVGTALLDMYSKSGAITYAENVF----AETLEKNSVTYTTMILSYGQHGM 606

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            + A   F  ML  G  P S T  +IL AC+ A     G    G  I   +E +  ++ +
Sbjct: 607 GERALSLFHAMLGSGIKPDSVTFVAILSACSYA-----GLVDEGLRIFQSMEREYKIQPS 661

Query: 391 ------LVDMYAKCGFISEARTLFDKMSERNTV--TWNSMIFGCANHGYCDEAIELFNQM 442
                 + DM  + G + EA      + E       W S++  C  HG  +    + N++
Sbjct: 662 SEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKL 721

Query: 443 EERKKLDHLSFTAVLTACCH--------VGLVELGQRLFNMMQEK-YKIMPRTEHYACMV 493
            E +K   L+   VL +  +        V  V    R   +M+E     +    H  C +
Sbjct: 722 LEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFM 781

Query: 494 DLLGRAGRLAEAYEMIKTMSTE 515
               +  + AE Y+M++ ++ E
Sbjct: 782 SRDHKHPQCAEIYQMLEKLAME 803


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 161/501 (32%), Positives = 264/501 (52%), Gaps = 47/501 (9%)

Query: 74   FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR 133
            F L+  +++  +     ++  ++G  +HA +  S  A+   I + L+  Y +C+    AR
Sbjct: 888  FVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEAR 947

Query: 134  MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193
             +F+ +P+ NI  W +L   Y + G   EA+ +F  M   G   +   + SV+ AC  L+
Sbjct: 948  RVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLA 1007

Query: 194  DIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
                G ++H+ V+K   F  D  + ++L+DMY+KCG    A+ VFD M  +         
Sbjct: 1008 ADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASR--------- 1058

Query: 253  SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
                                      +VV+  +LI+G+++S +      +F  M    VE
Sbjct: 1059 --------------------------SVVSETSLITGYARSANVEDAQMVFSQM----VE 1088

Query: 313  PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
             +V++W  +I+    N   +EA   F  +  +   PT  T  ++L AC + A+++ G++ 
Sbjct: 1089 KNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQA 1148

Query: 373  H------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
            H      G     G E D+ V ++LVDMY K G I +   +F++M+ R+ V+WN+MI G 
Sbjct: 1149 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGH 1208

Query: 427  ANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
            A +G   +A+ LF +M   ++  D ++   VL+AC H GLVE G+R F  M E + I+P 
Sbjct: 1209 AQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPS 1268

Query: 486  TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
             +HY CM+DLLGRAG L E  E+IK MS EPD  +W +LLG+C+ H N+E+ E AA  L 
Sbjct: 1269 QDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLF 1328

Query: 546  ELEPESAANNMLLTDLYANAG 566
            EL+P ++   +LL+++YA  G
Sbjct: 1329 ELDPRNSGPYVLLSNMYAELG 1349



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 153/538 (28%), Positives = 254/538 (47%), Gaps = 67/538 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L   + LH  +          + T L+  Y  C  +  AR  FD+I + N   W  +   
Sbjct: 167 LCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRR 226

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G    AV +F  M   G++   + +   + AC   + +  G  IH+ VL+H +   
Sbjct: 227 YHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHH 286

Query: 214 AFVVSSLIDMYSKCGSVE-------------------------------KAKKVFDEMVE 242
             V SS++DMY+KCG+++                                AK+VF+ M E
Sbjct: 287 VHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKE 346

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK-----SGDQV 297
           +++V+ NAM++GY++    T AL L +++     + + +T  +++S  +       G++V
Sbjct: 347 RNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEV 406

Query: 298 ---------------------MVSKLFQLMRAK-------GVEPDVVSWTSVISGLVHNF 329
                                M SK   L  A+       G E D  SW S+ISG   + 
Sbjct: 407 HAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHS 466

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
            ++ A     +M S+   P  +T SS L ACA+   +++G +IH   I  G E D  +RS
Sbjct: 467 MSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRS 525

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
            L+DMY KC     +  +F+    R+ + WNSMIFGCA  G  +  ++LF++M+++  K 
Sbjct: 526 VLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKA 585

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++F   L +C   G V LG+  F +M ++  I+PR EHY CM++LLG+ G + E  + 
Sbjct: 586 DSVTFLGALVSCISEGHVRLGRSYFTLMMDE-SIIPRIEHYECMIELLGKHGCMVELEDF 644

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++ M  EP   +W  +   C+ +GN +L E AAK +++  P +    +   D  +N G
Sbjct: 645 VEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFVATVDYESNDG 702



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/488 (21%), Positives = 219/488 (44%), Gaps = 68/488 (13%)

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
           T +  + I     C ++  AR LFD +P  +   W A+  A +R G+  EA+++F  M+ 
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            G++     + SVL  C    D+    ++H  + K  F ++  + ++L+D+Y  C  +  
Sbjct: 145 LGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-------------- 278
           A++ FD+++E + ++ N +V  Y   G+   A+++   + +  V+P              
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRD 264

Query: 279 ---------------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------ 311
                                +V   ++++  ++K G       LF L   K +      
Sbjct: 265 NNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSI 324

Query: 312 ---------------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
                                E ++VSW ++++G + +     A   F++M  +     +
Sbjct: 325 VSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDA 384

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART--LF 408
            T+ S+L AC    ++ +G+E+H  AI  G      +++ALV MY+KCG +  A    LF
Sbjct: 385 ITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLF 444

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVEL 468
           +  SER++ +WNS+I G   H   + A+    +M+     +  +F++ L AC ++ L++ 
Sbjct: 445 EMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQ 504

Query: 469 GQRLFN-MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           G ++   M+++ Y+I       + ++D+  +  +   +  + +   +  D+ +W +++  
Sbjct: 505 GMQIHAYMIRKGYEIDDILR--SVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFG 561

Query: 528 CKNHGNIE 535
           C   G  E
Sbjct: 562 CAYSGKGE 569



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 41/322 (12%)

Query: 248  MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            +N +VS Y + G   +A  + +EI      PN  ++N L+S  ++ G       LF  + 
Sbjct: 798  LNTLVSAYARLGRLPDARRVFDEIP----HPNTFSYNALLSAHARLGRPADARALFHAI- 852

Query: 308  AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
                +PD  S+ +VI+ L  +    +A      M +  F   + + +S L ACA+  + R
Sbjct: 853  ---PDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSR 909

Query: 368  RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
             G ++H          D+++ SAL+DMYAKC +  EAR +F+ M ERN V+WNS+I    
Sbjct: 910  TGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYE 969

Query: 428  NHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQR--------------- 471
             +G   EA+ LF  M +   + D ++  +V++AC  +     G++               
Sbjct: 970  QNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDM 1029

Query: 472  -LFNMMQEKYKIMPRTEHYACMVDLL---------------GRAGRLAEAYEMIKTMSTE 515
             L N + + Y    RT    C+ D +                R+  + +A +M+ +   E
Sbjct: 1030 VLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDA-QMVFSQMVE 1088

Query: 516  PDLFVWGALLGACKNHGNIELA 537
             ++  W  L+ A   +G  E A
Sbjct: 1089 KNVIAWNVLIAAYAQNGEEEEA 1110



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 66/405 (16%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP---------- 140
           + AL+ G+ +HA ++  G      + + ++  Y +C  +  A+ LF+  P          
Sbjct: 265 NNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSI 324

Query: 141 ---------------------KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
                                + N+  W A+   Y R      A+ +F +M  +  + + 
Sbjct: 325 VSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDA 384

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK--VF 237
             + SVL AC  + DIG GE++H+  +K  F +   + ++L+ MYSKCG +  A++  +F
Sbjct: 385 ITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLF 444

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----K 292
           +   E+D  + N+++SGY +  ++  AL  + ++ +  V PN  T+++ ++  +     K
Sbjct: 445 EMGSERDSYSWNSLISGYERHSMSEAALYALTKMQS-EVTPNQSTFSSALAACANIFLLK 503

Query: 293 SGDQV---MVSKLFQL---------------------MRAKGVEP--DVVSWTSVISGLV 326
            G Q+   M+ K +++                     +R     P  DV+ W S+I G  
Sbjct: 504 QGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCA 563

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
           ++   +   D F EM  QG    S T    L +C S  ++R G+      +   +   + 
Sbjct: 564 YSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIE 623

Query: 387 VRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
               ++++  K G + E     + M  E  T  W  +   C  +G
Sbjct: 624 HYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYG 668


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 167/521 (32%), Positives = 279/521 (53%), Gaps = 46/521 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIA--TKLITFYTEC---QNIHHARMLFDEIPKTNIHR 146
           + L   K  HA ++ +     T+I   +KLI F  +    +  ++A +LF +I   N++ 
Sbjct: 15  KTLLQFKTSHALILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANLLFRQIHSPNVYI 74

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           + ++   YA+      ++ ++ +M   G   + F  P VLKAC  + D  +G+ +HS +L
Sbjct: 75  FNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCIL 134

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K  F  + +V + L++MY +C ++E   KVFD++ + ++VA   +++GYV      EAL 
Sbjct: 135 KSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALE 194

Query: 267 LVEEIGTPRVKPNVVTW-NTLISG-------------------------FSKSGDQVMVS 300
           + +E+G   V+ N VT  N LI+                          F+ + + ++ +
Sbjct: 195 VFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILAT 254

Query: 301 KLFQL------------MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
            + ++            +  K  E ++V+W  +I+        +EA   F  ML+ GFCP
Sbjct: 255 AIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCP 314

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
             AT  S+L  CA    +  G+ +H   +   +  D+ + +AL+DMYAK G +  A+ +F
Sbjct: 315 DKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIF 374

Query: 409 DK-MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGL 465
           +  + +++ V W SMI   A HG+ +EA+ LF  M+E   L  DH+++  VL AC HVGL
Sbjct: 375 NNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVGL 434

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           VE  Q+ FN+M + Y I+P  EHY+CMVDLL RAG   EA ++++TMS  P++ +WGALL
Sbjct: 435 VEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMETMSIRPNIAIWGALL 494

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             C+ H NI +A      L+ELEP  +    LL+++YAN+G
Sbjct: 495 NGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSG 535



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 182/405 (44%), Gaps = 58/405 (14%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           +I D+   SGK +H+ ++ SG      +AT L+  Y EC+N+     +FD+IPK N+  W
Sbjct: 119 FIYDQV--SGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAW 176

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             L   Y      +EA+ VF EM   G++ N   + + L AC    D+ TG  +H  V K
Sbjct: 177 TCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCK 236

Query: 208 HSFGTDAFVVSS---------LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
              G D FV +S         +++MY+KCG +  A+++F++M E++IVA N M++ Y Q 
Sbjct: 237 A--GYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQY 294

Query: 259 GLATEALNLV-------------------------------EEIGTPRVKPN----VVTW 283
               EAL L                                E +    +K N    +   
Sbjct: 295 ERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALA 354

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML- 342
             L+  ++K+G+     K+F     K    DVV WTS+I+ L  +   +EA   F+ M  
Sbjct: 355 TALLDMYAKNGELGSAQKIFNNSLEK---KDVVMWTSMINALAIHGHGNEALSLFQIMQE 411

Query: 343 SQGFCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
                P   T   +L AC+    +    K+ +      G+  +    S +VD+ ++ G  
Sbjct: 412 DSSLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHF 471

Query: 402 SEARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
            EA  L + MS R N   W +++ GC  H    E I + +Q++ R
Sbjct: 472 REAEKLMETMSIRPNIAIWGALLNGCQIH----ENIPVASQVKVR 512



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 99/196 (50%), Gaps = 16/196 (8%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           +++  F    A +   + +  R   L  G+ +HA L+ S +A+   +AT L+  Y +   
Sbjct: 307 MLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGE 366

Query: 129 IHHARMLFDE-IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS--- 184
           +  A+ +F+  + K ++  W ++  A A  G+  EA+++F     Q ++++  ++P    
Sbjct: 367 LGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLF-----QIMQEDSSLVPDHIT 421

Query: 185 ---VLKACGHLSDIGTGEKIHSLVLKHSFGT--DAFVVSSLIDMYSKCGSVEKAKKVFDE 239
              VL AC H+  +   +K  +L+ K S+G   +    S ++D+ S+ G   +A+K+ + 
Sbjct: 422 YIGVLFACSHVGLVEEAQKQFNLMTK-SYGILPEKEHYSCMVDLLSRAGHFREAEKLMET 480

Query: 240 M-VEKDIVAMNAMVSG 254
           M +  +I    A+++G
Sbjct: 481 MSIRPNIAIWGALLNG 496


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 172/534 (32%), Positives = 270/534 (50%), Gaps = 48/534 (8%)

Query: 72  RSFHLSPAAYS-----ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           +SF L P AY+     + +    R   L  G+ +H+ ++  G        + L+  Y +C
Sbjct: 94  KSFGLMPDAYTFGSILKGVACACR---LDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKC 150

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
           + +  A M+F  IP+ N   W AL   +   G H  A  +   M  +G++ +      +L
Sbjct: 151 ERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLL 210

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDI 245
                        ++H  ++KH    D  V ++ I  YS+CGS+E A++VFD  V  +D+
Sbjct: 211 TLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDL 270

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-------------K 292
           V  N+M++ ++       A  L  ++     +P++ T+ T+IS  S             K
Sbjct: 271 VTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKDNGKSLHGLVIK 330

Query: 293 SGDQVMVS---------------------KLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
            G + +V                       +F  M +K    D VSW S+++G      +
Sbjct: 331 RGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESK----DRVSWNSILTGFSQTGHS 386

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           + A   F  M            S++L +C+  A ++ G++IH   +  G E +  V S+L
Sbjct: 387 ENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSL 446

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           + MY+KCG I +AR  F+K ++ +++TWNS++F  A HG  D A+ LF QM ++K K+DH
Sbjct: 447 IFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDH 506

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F A LTAC H+GLVE G+ L   M   Y I PR EHYAC VDL GRAG L EA  +I+
Sbjct: 507 ITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIE 566

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           +M  +PD  VW  LLGAC+  G+IELA   A HL ELEPE     ++L+++Y +
Sbjct: 567 SMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELEPEEHCTYVILSNMYGH 620



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 223/485 (45%), Gaps = 48/485 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN--IHHARMLFDEIPKTNIHRWIAL 150
           AL +  I H Q I  G +        +++ YT C +  +  A  LFDE+   +   W  +
Sbjct: 14  ALYNIFITHCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTM 73

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              Y   G    A  ++  M   GL  + +   S+LK       +  G+++HSL++K  +
Sbjct: 74  ISGYVNSGSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGY 133

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG----------- 259
               +  S+L+DMY+KC  V  A  VF  +  ++ V+ NA+++G+V  G           
Sbjct: 134 EEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRC 193

Query: 260 LATEALNLVEEIGTP------------------------RVKPNVVTWNTLISGFSKSGD 295
           +  E + L +   +P                         V+ +    N  I+ +S+ G 
Sbjct: 194 MEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGS 253

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                ++F    A G   D+V+W S+++  + +   + AF  F +M   GF P   T ++
Sbjct: 254 LEDAERVFD--GAVG-SRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTT 310

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY--AKCGFISEARTLFDKMSE 413
           I+ AC+   N   GK +HG  I  G+E  + + +A++ MY  +    + +A  +F  M  
Sbjct: 311 IISACSHKDN---GKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMES 367

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           ++ V+WNS++ G +  G+ + A++LF  M      +DH +F+AVL +C  +  ++LGQ++
Sbjct: 368 KDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQI 427

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            +++  K          + ++ +  + G + +A +  +  + +  +  W +++ A   HG
Sbjct: 428 -HVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSI-TWNSIMFAYAQHG 485

Query: 533 NIELA 537
             ++A
Sbjct: 486 QGDVA 490



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 144/314 (45%), Gaps = 7/314 (2%)

Query: 62  EAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLIT 121
           E  +K+ +  + F   P  Y+    I        +GK LH  +I  GL +L  I   +I 
Sbjct: 287 ETAFKLFLDMQQFGFEPDIYTYTTIISACSHK-DNGKSLHGLVIKRGLEQLVPICNAVIA 345

Query: 122 FYTEC--QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
            Y E    ++  A  +F  +   +   W ++   +++ G+ + A+ +F  M    +  + 
Sbjct: 346 MYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDH 405

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           +   +VL++C  L+ +  G++IH L +K  F ++ FV SSLI MYSKCG +E A+K F++
Sbjct: 406 YAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEK 465

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
             +   +  N+++  Y Q G    AL L  ++   +VK + +T+   ++  S  G     
Sbjct: 466 TAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQG 525

Query: 300 SKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             L + M +  G+ P +  +   +         DEA    + M    F P +    ++L 
Sbjct: 526 RYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESM---PFDPDAMVWKTLLG 582

Query: 359 ACASAANMRRGKEI 372
           AC +  ++    ++
Sbjct: 583 ACRACGDIELAAQV 596


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 270/505 (53%), Gaps = 39/505 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +HA ++ S       +A  L+  +     + +A  +FDE+ + +   W ++   + +
Sbjct: 131 GMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQ 190

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G + EA+  F  +    LK +   + S+L A G L  +  G++IH+  +K+   ++  +
Sbjct: 191 NGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRI 250

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-- 274
            ++LIDMYSKC  V  A  VFD+M+ KD+++   +++ Y Q    TEAL L+ ++ T   
Sbjct: 251 GNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGM 310

Query: 275 --------------------------------RVKPNVVTWNTLISGFSKSGDQVMVSKL 302
                                           R   +++  N +I  ++  G+    +++
Sbjct: 311 DVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRM 370

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ ++ K    DVVSWTS+IS  VHN   +EA   F  M      P S T+ SIL A AS
Sbjct: 371 FESIKCK----DVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAAS 426

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            + + +GKEIHG     G   +    ++LVDMYA CG +  A  +F     ++ V W +M
Sbjct: 427 LSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTM 486

Query: 423 IFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I     HG    A+ELF+ ME++K + DH++F A+L AC H GL+  G+RL   M+ KY+
Sbjct: 487 INAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQ 546

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + P  EHYAC+VDLLGRA  L EAY  +K+M  EP   VW A LGAC+ H N +L EIAA
Sbjct: 547 LEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAA 606

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           + L +L+P+S  + +L+++++A +G
Sbjct: 607 QKLLDLDPDSPGSYVLISNVFAASG 631



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 145/547 (26%), Positives = 248/547 (45%), Gaps = 83/547 (15%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN-IHRWIALTG 152
           +  G  +H  +I  G   +  +A  L++ Y +C +I  AR LFD + + N +  W ++  
Sbjct: 26  IHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIIS 85

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AY+  G   EA+ +F EM   G+  N + + + L+AC   S    G +IH+ +LK +   
Sbjct: 86  AYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVL 145

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D +V ++L+ M+ + G +  A ++FDE+ EKD +  N+M++G+ Q GL  EAL     + 
Sbjct: 146 DVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQ 205

Query: 273 TPRVKPNVVT---------------------------W--------NTLISGFSKSGDQV 297
              +KP+ V+                           W        NTLI  +SK     
Sbjct: 206 DANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVA 265

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               +F  M    +  D++SWT+VI+    N C+ EA    +++ ++G    +  I S L
Sbjct: 266 YAGLVFDKM----INKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTL 321

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC+    +   KE+HG  +  G+  DL +++ ++D+YA CG I+ A  +F+ +  ++ V
Sbjct: 322 LACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVV 380

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF--- 473
           +W SMI    ++G  +EA+ +F  M+E   + D ++  ++L+A   +  +  G+ +    
Sbjct: 381 SWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFI 440

Query: 474 ---NMMQEKYKIMPRTEHYAC------------------------MVDLLGRAGRLAEAY 506
                M E   +    + YAC                        M++  G  GR   A 
Sbjct: 441 FRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAV 500

Query: 507 EMIKTMSTE---PDLFVWGALLGACKNHGNIE-----LAEIAAKHLSELEPESAANNMLL 558
           E+   M  +   PD   + ALL AC + G I      L  +  K+  E  PE  A    L
Sbjct: 501 ELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYA---CL 557

Query: 559 TDLYANA 565
            DL   A
Sbjct: 558 VDLLGRA 564



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 200/420 (47%), Gaps = 44/420 (10%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M + G+  + F  P VLKACG + DI  G +IH L++K  + +  FV +SL+ MY+KC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 230 VEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI- 287
           +  A+K+FD M E+ D+V+ N+++S Y   G   EAL L  E+    V  N  T    + 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 288 ----SGFSKSG----------DQVMVSKLFQLMRAKGV----------------EPDVVS 317
               S F K G          +QV+   +   + A  V                E D ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W S+I+G   N   +EA   F  +      P   ++ SIL A      +  GKEIH  A+
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
              ++ +L + + L+DMY+KC  ++ A  +FDKM  ++ ++W ++I   A +    EA++
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL--FNMMQEKYKIMPRTEHYACMVD 494
           L  +++ +   +D +   + L AC  +  +   + +  + + +    +M +      ++D
Sbjct: 301 LLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNM----IID 356

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL---SELEPES 551
           +    G +  A  M +++  + D+  W +++ +C  H  +    +   +L   + +EP+S
Sbjct: 357 VYADCGNINYATRMFESIKCK-DVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVEPDS 414



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 5/280 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L   K +H   +  GL+ L  +   +I  Y +C NI++A  +F+ I   ++  W ++ 
Sbjct: 328 RCLSHAKEVHGYTLKRGLSDL-MMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMI 386

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G   EA+ VF+ M    ++ +   + S+L A   LS +  G++IH  + +  F 
Sbjct: 387 SCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFM 446

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +   V+SL+DMY+ CGS+E A KVF     K +V    M++ Y   G    A+ L   +
Sbjct: 447 LEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIM 506

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
              ++ P+ +T+  L+   S SG      +L + M+ K  +EP    +  ++  L     
Sbjct: 507 EDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANH 566

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
            +EA+   K M  +   PT+    + L AC   +N + G+
Sbjct: 567 LEEAYHFVKSMQIE---PTAEVWCAFLGACRIHSNKKLGE 603


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 167/517 (32%), Positives = 268/517 (51%), Gaps = 61/517 (11%)

Query: 59  IFIEAHYKMPIISRS---FHLSP----AAYSERIEIYIRDRALQSGKILHAQLIVSGLAR 111
           + I +H    ++S +   F L+P     +++  +  Y+R+     G++  A+ + +    
Sbjct: 136 VMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN-----GRVEEARGLFNSRTE 190

Query: 112 LTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
              I+   L++ Y +   +  AR LFD +P  ++  W  +   YARRG   EA  +F   
Sbjct: 191 WDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAA 250

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
            ++                                       D F  ++++  Y++ G +
Sbjct: 251 PVR---------------------------------------DVFTWTAVVSGYAQNGML 271

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           E+A++VFD M E++ V+ NAMV+ Y+QR +  EA  L   +       NV +WNT+++G+
Sbjct: 272 EEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGY 327

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +++G       +F  M  K    D VSW ++++      C++E    F EM   G     
Sbjct: 328 AQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +  + +L  CA  A +  G ++HG  I  G      V +AL+ MY KCG + +AR  F++
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELG 469
           M ER+ V+WN+MI G A HG+  EA+E+F+ M     K D ++   VL AC H GLVE G
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
              F  M   + +  + EHY CM+DLLGRAGRLAEA++++K M  EPD  +WGALLGA +
Sbjct: 504 ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASR 563

Query: 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            H N EL   AA+ + ELEPE+A   +LL+++YA++G
Sbjct: 564 IHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSG 600



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 214/489 (43%), Gaps = 83/489 (16%)

Query: 94  LQSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G++  A+ + + + R  T     ++  Y+    +  A  LF  IP+ + + +  L  
Sbjct: 49  MRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLH 108

Query: 153 AYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV--LKHS 209
           A A      +A  +F EM ++  +  N+ +               +    H LV   +H 
Sbjct: 109 ALAVSSSLADARGLFDEMPVRDSVTYNVMI---------------SSHANHGLVSLARHY 153

Query: 210 FG----TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           F      DA   + ++  Y + G VE+A+ +F+   E D ++ NA++SGYVQ G  +EA 
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEAR 213

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L + +       +VV+WN ++SG+++ GD V   +LF     +    DV +WT+V+SG 
Sbjct: 214 ELFDRM----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGY 265

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
             N   +EA   F  M  +     +A +++ +        M   KE+        V    
Sbjct: 266 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYI----QRRMMDEAKELFNMMPCRNVAS-- 319

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
              + ++  YA+ G + EA+ +FD M +++ V+W +M+   +  G  +E ++LF +M   
Sbjct: 320 --WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRL-------------------------------- 472
            + ++  +F  VL+ C  +  +E G +L                                
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 473 ---FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLG 526
              F  M+E+  +      +  M+    R G   EA   ++M++T ST+PD      +L 
Sbjct: 438 RNAFEEMEERDVV-----SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 527 ACKNHGNIE 535
           AC + G +E
Sbjct: 493 ACSHSGLVE 501



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 20/363 (5%)

Query: 57  NGIFIEAHYKMPIISRSFHLSP----AAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           NG+  EA        R F   P     +++  +  YI+ R +   K L   +    +A  
Sbjct: 268 NGMLEEAR-------RVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
                 ++T Y +   +  A+ +FD +P+ +   W A+  AY++ G  +E + +F EM  
Sbjct: 321 NT----MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            G   N      VL  C  ++ +  G ++H  +++  +G   FV ++L+ MY KCG++E 
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMED 436

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A+  F+EM E+D+V+ N M++GY + G   EAL + + + T   KP+ +T   +++  S 
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496

Query: 293 SG-DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           SG  +  +S  + +    GV      +T +I  L       EA D  K+M    F P S 
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM---PFEPDST 553

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
              ++L A     N   G+        +  E +  +   L ++YA  G   +AR +   M
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMM 612

Query: 412 SER 414
            ER
Sbjct: 613 EER 615



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 133/339 (39%), Gaps = 90/339 (26%)

Query: 275 RVKPNVV-------------------------------TWNTLISGFSKSGDQVMVSKLF 303
           R++P V+                               T+N +++G+S +G   + + LF
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS-------- 355
           + +      PD  S+ +++  L  +    +A   F EM  +     +  ISS        
Sbjct: 93  RAI----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVS 148

Query: 356 -------ILPACAS-------AANMRRGK--EIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
                  + P   +       AA +R G+  E  G       E D    +AL+  Y + G
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL-FNSRTEWDAISWNALMSGYVQWG 207

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459
            +SEAR LFD+M  R+ V+WN M+ G A  G   EA  LF+    R   D  ++TAV++ 
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR---DVFTWTAVVSG 264

Query: 460 CCHVGLVELGQRLFNMMQEK------------------------YKIMP--RTEHYACMV 493
               G++E  +R+F+ M E+                        + +MP      +  M+
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
               +AG L EA  +  TM  + D   W A+L A    G
Sbjct: 325 TGYAQAGMLEEAKAVFDTM-PQKDAVSWAAMLAAYSQGG 362



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 34/169 (20%)

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-------------- 442
           + G +++A  LF  M  R+T T+N+M+ G + +G    A  LF  +              
Sbjct: 50  RAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHA 109

Query: 443 --------------EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
                         +E    D +++  ++++  + GLV L +  F++  EK  +      
Sbjct: 110 LAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV-----S 164

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +  M+    R GR+ EA  +  +  TE D   W AL+      G +  A
Sbjct: 165 WNGMLAAYVRNGRVEEARGLFNS-RTEWDAISWNALMSGYVQWGKMSEA 212


>gi|325260820|gb|ADZ04639.1| hypothetical protein [Oryza glaberrima]
          Length = 674

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 245/440 (55%), Gaps = 9/440 (2%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           ++  AR +FD +P+ N+  W ++   Y +RG  ++ + +F  M  +G++ N   +   L 
Sbjct: 210 SVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALD 269

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC   S    G +IH+L++   F  D F+  S+I MYS+ G +  AK+ FD M +KDIV+
Sbjct: 270 ACAVASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVS 329

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            N++++GYVQ  +  EA  L + +     + + V+W +++ GF+  G      +LF+ M 
Sbjct: 330 WNSLITGYVQHDMVEEAHVLFKLMH----QKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            K    D V+WT++IS  + N     A   F  M  +G  P +   S +L A AS A + 
Sbjct: 386 VK----DEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLN 441

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +G++ H  +I MG   D  V ++LV MYAKCG ++EA  +F  +S  + +  NSMI    
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFV 501

Query: 428 NHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG+ ++A++LF +M+    K +H++F  +LT C   G V+ G   F  M+  Y + P  
Sbjct: 502 QHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           EHY CMVDLLGRAG LAEA EMI +M        W ALL A   H N+  A+IAA+ L E
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLE 621

Query: 547 LEPESAANNMLLTDLYANAG 566
            +P  A    +L+ ++++AG
Sbjct: 622 KDPYDATAYTVLSRMFSSAG 641



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 216/488 (44%), Gaps = 91/488 (18%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+T Y     +  A++LFD++P  ++  W AL  AYA  G    A  VF +M  +     
Sbjct: 44  LLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             ++   L+A    +      K+ +         +A    ++I   +K   + +A+ V++
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPA--------KNAVSYGAIISGLAKAEMLHEAELVYE 155

Query: 239 EMV--EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           EM    +D V  NA+++GY++ G    AL + E + T R   +V++W+ ++ G  K G  
Sbjct: 156 EMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGM-TVR---DVISWSAMVDGLCKHGSV 211

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F  M     E +VVSWTS+I G V      +    F  M  +G    + T+S  
Sbjct: 212 SEARRVFDAMP----ERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVA 267

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA A+  R G +IH   I MG E D+ +  +++ MY++ G++ +A+  FD M +++ 
Sbjct: 268 LDACAVASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDI 327

Query: 417 VTWN-------------------------------SMIFGCANHGYCDEAIELFNQMEER 445
           V+WN                               SM+ G AN G+  E++ELF QM  +
Sbjct: 328 VSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVK 387

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYAC------------- 491
              D +++TA++++    G      R F  M QE  K  P T  ++C             
Sbjct: 388 ---DEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCK--PNTIAFSCLLSALASLAMLNQ 442

Query: 492 ----------------------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
                                 +V +  + GRLAEAY +  ++S  P L    +++ A  
Sbjct: 443 GRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFV 501

Query: 530 NHGNIELA 537
            HG +E A
Sbjct: 502 QHGFVEDA 509



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 151/331 (45%), Gaps = 25/331 (7%)

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L+  Y + G +  A+ +FD+M  +D+++  A+++ Y   G    A  + +++  PR 
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDM--PR- 97

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             N  +WN L+S + ++        LF  M AK    + VS+ ++ISGL       EA  
Sbjct: 98  -RNAPSWNALLSVYLRAARPRAAHALFYKMPAK----NAVSYGAIISGLAKAEMLHEAEL 152

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMY 395
            ++EM  Q   P  +           A  +R G+      +  G+   D+   SA+VD  
Sbjct: 153 VYEEMPWQWRDPVGSN-------ALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFT 454
            K G +SEAR +FD M ERN V+W SMI G    G C + + LF N   E  +++  + +
Sbjct: 206 CKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLS 265

Query: 455 AVLTACCHVGLVELGQRLFNM---MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
             L AC    L   G ++ N+   M  +  I         ++ +  R G + +A      
Sbjct: 266 VALDACAVASLAREGIQIHNLIISMGFELDIFLGDS----IIIMYSRFGWMVDAKRAFDC 321

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           M  + D+  W +L+     H  +E A +  K
Sbjct: 322 MQ-QKDIVSWNSLITGYVQHDMVEEAHVLFK 351


>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
          Length = 534

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 163/478 (34%), Positives = 256/478 (53%), Gaps = 21/478 (4%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT---NIHRWIALTG 152
           + + L  QL+V GL    + A  LI       +  HAR +FD    T   N++ W A   
Sbjct: 5   AARQLQVQLLVRGLPLPARAAVSLIA---SSHSPGHARAVFDNAVPTACENVYLWTATIA 61

Query: 153 AYARRGYH-----QEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           AYAR         + A+T+F  M   G+ + N F   SV++ C  L  +  G ++H  ++
Sbjct: 62  AYARHASSSPSVAEGALTLFRLMLRHGVPRPNAFTASSVVRCCSALRAVRVGIQVHGFLV 121

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
               G    V ++L+DMY   G V  A++VFDEM    +V  N MV+ YV+ G       
Sbjct: 122 NAGLGRAEHVRAALVDMYGNHGRVADARRVFDEMSATSVVLGNTMVACYVRAGDVESGRV 181

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           + + +    V+ ++++WNTL+ G+ + G   +  +LF+ M  + V     SW   I+   
Sbjct: 182 VFDRM----VERDLISWNTLMMGYLRQGGAGVARELFEEMPDRNVN----SWNMAIAAYS 233

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
                 +A   F  M    F P  AT++ ++ ACA   ++   +++HG      VE + H
Sbjct: 234 QERSWADAVAVFNRMRLARFQPDPATMAVLMSACAQLGSLSVARQVHGILRKGCVEMNFH 293

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
           V ++L+DMYAKCG IS+A  LF +   ++TV++N MI   A HG+  +A+++F++M +ER
Sbjct: 294 VLNSLIDMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARHGHGRDALQVFDEMSKER 353

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + D ++   VL+AC H GLV  G+  F  M+  Y I    +HYACMVDL GRAG + EA
Sbjct: 354 LQPDAVTLLGVLSACAHAGLVHDGKFYFESMKTNYAIEQSPDHYACMVDLYGRAGLIKEA 413

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           YE+ + M  EP   VWGAL+ AC+ H N+E+ ++AA+ L  +EP +    +LL +  A
Sbjct: 414 YELARAMPMEPHAGVWGALINACRKHCNVEVGKVAARELIAIEPRNPGTYVLLANTLA 471



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 62/265 (23%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH------ 145
           RA++ G  +H  L+ +GL R   +   L+  Y     +  AR +FDE+  T++       
Sbjct: 108 RAVRVGIQVHGFLVNAGLGRAEHVRAALVDMYGNHGRVADARRVFDEMSATSVVLGNTMV 167

Query: 146 -------------------------RWIALTGAYARRG---------------------- 158
                                     W  L   Y R+G                      
Sbjct: 168 ACYVRAGDVESGRVVFDRMVERDLISWNTLMMGYLRQGGAGVARELFEEMPDRNVNSWNM 227

Query: 159 ----YHQE-----AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
               Y QE     AV VF+ M +   + +   +  ++ AC  L  +    ++H ++ K  
Sbjct: 228 AIAAYSQERSWADAVAVFNRMRLARFQPDPATMAVLMSACAQLGSLSVARQVHGILRKGC 287

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              +  V++SLIDMY+KCGS+ +A  +F E   KD V+ N M+    + G   +AL + +
Sbjct: 288 VEMNFHVLNSLIDMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARHGHGRDALQVFD 347

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSG 294
           E+   R++P+ VT   ++S  + +G
Sbjct: 348 EMSKERLQPDAVTLLGVLSACAHAG 372



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 110/253 (43%), Gaps = 28/253 (11%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            +   LI  Y +C +I  A +LF E    +   +  +  A AR G+ ++A+ VF EM  +
Sbjct: 293 HVLNSLIDMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARHGHGRDALQVFDEMSKE 352

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            L+ +   +  VL AC H   +  G+    S+   ++        + ++D+Y + G +++
Sbjct: 353 RLQPDAVTLLGVLSACAHAGLVHDGKFYFESMKTNYAIEQSPDHYACMVDLYGRAGLIKE 412

Query: 233 AKKVFDEM-VEKDIVAMNAMVSG-----YVQRG-LATEALNLVEEIGTPRVKPNVVTWNT 285
           A ++   M +E       A+++       V+ G +A   L  +E    PR   N  T+  
Sbjct: 413 AYELARAMPMEPHAGVWGALINACRKHCNVEVGKVAARELIAIE----PR---NPGTYVL 465

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
           L +  ++      V  ++Q MR KG+E     SW  V   +VH F           ++ +
Sbjct: 466 LANTLARGQQWEFVETVWQSMRGKGIEKTAGCSWLEV-ENVVHEF-----------LMGE 513

Query: 345 GFCPTSATISSIL 357
              P S  I SIL
Sbjct: 514 SSHPNSDEIYSIL 526


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 161/510 (31%), Positives = 265/510 (51%), Gaps = 33/510 (6%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R    + G+ LH   + +G A    +   L+  Y +  ++ +AR +FD I   N+  W 
Sbjct: 134 VRSADFRYGRRLHCNAVKAGGAD-GFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWT 192

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           ++     + G+ +E + +F+EM  + +  + + + SVL AC  L  +  G  +H  V+KH
Sbjct: 193 SMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKH 252

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               + F+ ++++DMY KCG VE A+++FDE+   D+V    M+ GY Q G   +AL L 
Sbjct: 253 GMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLF 312

Query: 269 EEIGTPRVKPNVVTWNTLISGFSK--------------------SGDQV------MVSKL 302
            +     + PN VT  T++S  ++                      D V      M +K 
Sbjct: 313 SDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKC 372

Query: 303 FQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             L  A G+       DVV+W S+I+G V N   +EA   F +M  QG  P + +I + L
Sbjct: 373 KALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNAL 432

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC    ++  GK  H  A+      +++V +AL+++Y KC  +  A+ +F +MSERN+V
Sbjct: 433 SACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSV 492

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TW +MI G    G    +I+L N+M ++  + + + FT++L+ C H G+V +G+  F+ M
Sbjct: 493 TWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSM 552

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            + + I P  +HYACMVD+L RAG L EA E I+ M    D+ +WGA L  CK H  +E 
Sbjct: 553 AQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRLEF 612

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
            E A   +  L P+     +L+++LY + G
Sbjct: 613 GEEAINRMMVLHPDKPDFYVLMSNLYTSYG 642



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 235/475 (49%), Gaps = 39/475 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L S + LHA+L+  GL R  +  TKL++ Y    ++  AR + DE P+ + + +    G 
Sbjct: 36  LPSLRALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGW 95

Query: 154 YARRGYHQEAVTVFHEMHIQGLK--QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           +A  G H +A+ +   M  +  +   ++ ++   LKA    +D   G ++H   +K + G
Sbjct: 96  HAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVK-AGG 154

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D FV++ L+DMY+K G +E A+KVFD ++ +++V+  +M+SG +Q G A E L L  E+
Sbjct: 155 ADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEM 214

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQ--------------------VMVSKLFQLMRAKGV 311
              RV P+  T  +++   +  G                      +  + L   ++   V
Sbjct: 215 REERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEV 274

Query: 312 EP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           E            D+V WT++I G   N    +A   F +       P S TI+++L A 
Sbjct: 275 EDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSAS 334

Query: 361 ASAANMRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           A   N+  G+ IH  ++ ++ +E D+ V +ALVDMYAKC  +SEA  +F ++S ++ VTW
Sbjct: 335 AQLRNLSLGRLIHAMSVKLLVIENDV-VMNALVDMYAKCKALSEANGIFGRISNKDVVTW 393

Query: 420 NSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NS+I G   +   +EA+ LF+QM  +    D +S    L+AC  +G + +G + F+    
Sbjct: 394 NSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIG-KCFHTYAV 452

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           K   +        +++L  +   L  A  +   MS E +   WGA++G     G+
Sbjct: 453 KRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMS-ERNSVTWGAMIGGYGMQGD 506



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 168/345 (48%), Gaps = 19/345 (5%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L  G+++HA  +   +     +   L+  Y +C+ +  A  +F  I   ++  W +L 
Sbjct: 338 RNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLI 397

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y       EA+ +F +M +QG   +   I + L AC  L D+  G+  H+  +K +F 
Sbjct: 398 AGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFL 457

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++ +V ++L+++Y+KC  +  A++VF EM E++ V   AM+ GY  +G +  +++L+ ++
Sbjct: 458 SNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKM 517

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKL-FQLM-RAKGVEPDVVSWTSVISGLVHNF 329
               ++PN V + +++S  S +G  V V K+ F  M +   + P +  +  ++  L    
Sbjct: 518 LKDNIQPNEVVFTSILSTCSHTG-MVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAG 576

Query: 330 CNDEAFDTFKEMLSQGFCPTSATIS---SILPACASAANMRRGKE-IHGCAIVMGVEGDL 385
             +EA +  ++M      P  A IS   + L  C   + +  G+E I+   ++   + D 
Sbjct: 577 NLEEALEFIQKM------PMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDF 630

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           +V   + ++Y   G   ++  +   M ER  V     + GC++ G
Sbjct: 631 YV--LMSNLYTSYGRWDKSLAIRRLMQERGLVK----LPGCSSVG 669


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 170/507 (33%), Positives = 270/507 (53%), Gaps = 36/507 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH  +I +  A    +A  L+  Y +   +  AR  F+ +   +   W A+   
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +  Y+ EA  +F  M   G+  +   + S++ AC ++ ++  G++ H L++K    T 
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTS 545

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               SSLIDMY KCG V  A+ VF  M  +++V++NA+++GY   G   EA++L +EI  
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQM 604

Query: 274 PRVKPNVVTWNTLISG---------------------FSKSGDQVMVSKLFQLMRAK--- 309
             +KP  VT+  L+ G                     F  S + V VS L   M ++   
Sbjct: 605 VGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFV 664

Query: 310 ---------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                         +V WT++ISG      +++A   ++ M S    P  A  +S+L AC
Sbjct: 665 DSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRAC 724

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV-TW 419
           A  ++++ G+EIH      G   D    S+L+DMYAKCG +  +  +F +M  RN V +W
Sbjct: 725 AGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISW 784

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSMI G A +GY +EA+E+F QME++  + D ++F  VL+AC H G V  G+++F++M  
Sbjct: 785 NSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVN 844

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            YK++PR +H  CMVD+LGR G L EA E I  +  + D  +W  LLGAC+ HG+    +
Sbjct: 845 NYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGK 904

Query: 539 IAAKHLSELEPESAANNMLLTDLYANA 565
            AA  L EL+P+S+++ +LL+ +YA +
Sbjct: 905 RAADKLMELKPQSSSSYVLLSSIYAES 931



 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 218/435 (50%), Gaps = 7/435 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL + K++H++ +  G+     +   ++  Y +C N+  A+  F  + K ++  W ++ 
Sbjct: 55  QALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVL 114

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G     V  F  M    ++ N F    VL AC  L D+  G ++H  V K  FG
Sbjct: 115 SMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFG 174

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             +F    LIDMY+KC  +  A+ VFD  +  D V+  A+++GYV+ G   EA+ + + +
Sbjct: 175 FRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRM 234

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                 P+ +T  T+++ +   G      KLF  +      P+VV+W  +ISG       
Sbjct: 235 QRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIP----NPNVVAWNVMISGHAKRGFA 290

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F E+   G   T +++ S+L A AS + +  G  +H  A   G++ +++V SAL
Sbjct: 291 EEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSAL 350

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
           V+MYAKC  +  A+ +F+ + ERN V WN+M+ G A +G   E +E F+ M+    + D 
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDE 410

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +FT++ +AC  +  +  G +L  +M  K K          +VD+  ++G L EA +  +
Sbjct: 411 FTFTSIFSACASLHYLNFGGQLHTVMI-KNKFASNLFVANALVDMYAKSGALKEARKQFE 469

Query: 511 TMSTEPDLFVWGALL 525
            M    D   W A++
Sbjct: 470 LMKIH-DNVSWNAII 483



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 129/509 (25%), Positives = 233/509 (45%), Gaps = 69/509 (13%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G ++HAQ    GL     + + L+  Y +C  +  A+ +F+ + + NI  W A+ G 
Sbjct: 325 LNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGG 384

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A+ G  QE +  F  M   G + + F   S+  AC  L  +  G ++H++++K+ F ++
Sbjct: 385 FAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASN 444

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMY+K G++++A+K F+ M   D V+ NA++ GYVQ     EA  +   + +
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504

Query: 274 PRVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMR 307
             V P+ V+  +++S  +     K G Q                      M  K   ++ 
Sbjct: 505 NGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLA 564

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V       +VVS  ++I+G       +EA   F+E+   G  PT  T + +L  C  
Sbjct: 565 ARDVFYSMPSRNVVSVNALIAGYTMGHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDG 623

Query: 363 AANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
           A  +  G++IHG  +  G +     V  +L+ +Y       ++ TLF ++   +  V W 
Sbjct: 624 AFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWT 683

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL------- 472
           ++I G A   + ++A++ +  M     L D  +F +VL AC  +  ++ GQ +       
Sbjct: 684 ALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHT 743

Query: 473 -FNMMQ--------------------EKYKIMPRTEH---YACMVDLLGRAGRLAEAYEM 508
            FNM +                    + ++ MPR  +   +  M+  L + G   EA E+
Sbjct: 744 GFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEI 803

Query: 509 IKTMSTE---PDLFVWGALLGACKNHGNI 534
            K M  +   PD   +  +L AC + G +
Sbjct: 804 FKQMEQQSIIPDEVTFLGVLSACSHAGRV 832



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 197/450 (43%), Gaps = 68/450 (15%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  +  +G    +     LI  Y +C+ +  AR++FD     +   W AL   Y R
Sbjct: 161 GRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVR 220

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  EAV VF  M                +  GH                     D   
Sbjct: 221 DGFPMEAVKVFDRM----------------QRVGH-------------------APDQIT 245

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           + ++++ Y   G +  A+K+F ++   ++VA N M+SG+ +RG A EA++   E+    +
Sbjct: 246 LVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGL 305

Query: 277 KPNVVTWNTLISGF----------------SKSG--DQV--------MVSKLFQLMRAKG 310
           K    +  +++S                  +K G  D V        M +K  ++  AK 
Sbjct: 306 KATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQ 365

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     E ++V W +++ G   N    E  + F  M   G  P   T +SI  ACAS   
Sbjct: 366 VFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHY 425

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G ++H   I      +L V +ALVDMYAK G + EAR  F+ M   + V+WN++I G
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
                Y DEA  +F +M     L D +S  ++++AC +V  ++ GQ+   ++  K  +  
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLV-KVGLDT 544

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            T   + ++D+  + G +  A ++  +M +
Sbjct: 545 STCAGSSLIDMYVKCGVVLAARDVFYSMPS 574



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 156/373 (41%), Gaps = 69/373 (18%)

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L  + T + IHS  LK   G    + + ++D+Y KCG+V+ A+K F  + +KD+ A N++
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG---------------------- 289
           +S Y+  GL    +     +    V+PN  T+  ++S                       
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF 173

Query: 290 ----FSKSGDQVMVSKLFQLMRAK-----GVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
               F + G   M +K   L  A+      +  D VSWT++I+G V +    EA   F  
Sbjct: 174 GFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDR 233

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M   G  P   T+ ++                                   V+ Y   G 
Sbjct: 234 MQRVGHAPDQITLVTV-----------------------------------VNAYVALGR 258

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           +++AR LF ++   N V WN MI G A  G+ +EAI  F ++++   K    S  +VL+A
Sbjct: 259 LADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSA 318

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
              + ++  G  + +    K  +       + +V++  +  ++  A ++  ++  E ++ 
Sbjct: 319 IASLSMLNYGS-MVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLG-ERNIV 376

Query: 520 VWGALLGACKNHG 532
           +W A+LG    +G
Sbjct: 377 LWNAMLGGFAQNG 389



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 46/234 (19%)

Query: 72  RSFHLSP--AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           RS ++ P  AA++  +       +LQ+G+ +H+ +  +G        + LI  Y +C ++
Sbjct: 706 RSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDV 765

Query: 130 HHARMLFDEIP-KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
             +  +F E+P + N+  W ++    A+ GY +EA+ +F +M  Q +  +      VL A
Sbjct: 766 KGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSA 825

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK----- 243
           C H                                    G V + +KVFD MV       
Sbjct: 826 CSH-----------------------------------AGRVSEGRKVFDLMVNNYKLLP 850

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            +  +  MV    + G   EA   + ++G    K + + W+TL+    K GD+V
Sbjct: 851 RVDHLGCMVDILGRWGFLNEAEEFINKLGC---KADPMLWSTLLGACRKHGDEV 901


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 155/432 (35%), Positives = 249/432 (57%), Gaps = 34/432 (7%)

Query: 169 EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228
           EM IQGL+       SVL  C   + I  G+++H+ ++K  +    ++ + LI +Y+KC 
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCR 526

Query: 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288
            +  A++V DEM E+++V+  AM+SGY QRG A+EAL+L  E+      PN  T+ T+++
Sbjct: 527 CLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 586

Query: 289 GFSKS-----GDQV---------------------MVSKLFQLMRAKGV-----EPDVVS 317
             + S     G Q+                     M +K  ++  A+ V     E DVVS
Sbjct: 587 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 646

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
            T++ISG      ++EA D F+ +  +G      T +S+L A +  A +  G+++H   +
Sbjct: 647 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 706

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
              +   + ++++L+DMY+KCG ++ +R +FD M ER  ++WN+M+ G + HG   EA+E
Sbjct: 707 RAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVE 766

Query: 438 LFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMVD 494
           LF  M+E  K+  D ++F AVL+ C H G+ + G  +F  M+ +K    P  EHY C+VD
Sbjct: 767 LFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVD 826

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554
           L GRAGR+ EA+E IK M  EP   +WG+LLGAC+ H N+ + E  A+ L E+E E+A N
Sbjct: 827 LFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGN 886

Query: 555 NMLLTDLYANAG 566
            ++L++LYA+AG
Sbjct: 887 YVILSNLYASAG 898



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 183/380 (48%), Gaps = 43/380 (11%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           I   A++ G+ +HA +I +       + T+LI  Y +C+ +  AR + DE+P+ N+  W 
Sbjct: 488 ISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWT 547

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+   Y++RGY  EA+ +F EM + G   N F   +VL +C   S    G +IHSLV+K 
Sbjct: 548 AMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKT 607

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
           SF +  FV SSL+DMY+K G + +A++VFD + E+D+V+  A++SGY Q GL  EAL+L 
Sbjct: 608 SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLF 667

Query: 269 EEIGTPRVKPNVVTW-----------------------------------NTLISGFSKS 293
             +    ++ N VT+                                   N+LI  +SK 
Sbjct: 668 RRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKC 727

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSAT 352
           G      ++F  M     E  V+SW +++ G   +    EA + FK M  +    P S T
Sbjct: 728 GSLTYSRRIFDSM----PERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVT 783

Query: 353 ISSILPACASAANMRRGKEIHGCAIVM--GVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
             ++L  C+      RG EI    +    G E ++     +VD++ + G + EA     K
Sbjct: 784 FLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKK 843

Query: 411 MS-ERNTVTWNSMIFGCANH 429
           M  E     W S++  C  H
Sbjct: 844 MPFEPTAAIWGSLLGACRVH 863



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 172/330 (52%), Gaps = 11/330 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
             Q G+ +H+ +I +       + + L+  Y +   I  AR +FD +P+ ++    A+  
Sbjct: 593 GFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIIS 652

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G  +EA+ +F  +  +G++ N     SVL A   L+ +  G ++HS VL+     
Sbjct: 653 GYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPF 712

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              + +SLIDMYSKCGS+  ++++FD M E+ +++ NAM+ GY + GL  EA+ L + + 
Sbjct: 713 YVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMK 772

Query: 273 TP-RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM--RAKGVEPDVVSWTSVISGLVHNF 329
              +VKP+ VT+  ++SG S  G +    ++F  M  +  G EP++  +  V+       
Sbjct: 773 EENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAG 832

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE--GDLHV 387
             +EAF+  K+M    F PT+A   S+L AC    N+  G+ +    + +  E  G+  +
Sbjct: 833 RVEEAFEFIKKM---PFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVI 889

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTV 417
              L ++YA  G   + RT+ + M E+  +
Sbjct: 890 ---LSNLYASAGRWDDVRTVRELMKEKAVI 916



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           N +  +   EM  QG         S+L  C S   +R G+ +H   I    E  +++R+ 
Sbjct: 458 NRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTR 517

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLD 449
           L+ +Y KC  + +AR + D+M ERN V+W +MI G +  GY  EA+ LF +M       +
Sbjct: 518 LIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPN 577

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
             +F  VLT+C      +LG+++ +++  K          + ++D+  +AG++ EA  + 
Sbjct: 578 EFTFATVLTSCTSSSGFQLGRQIHSLVI-KTSFESHIFVGSSLLDMYAKAGKICEARRVF 636

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
             +  E D+    A++     +  + L E A      L+ E   +N +
Sbjct: 637 DGLP-ERDVVSCTAIISG---YAQLGLDEEALDLFRRLQREGMRSNYV 680


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 242/452 (53%), Gaps = 40/452 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           ++  +I     C ++  AR +FD+    ++  W ++   Y RRG+  EA+  + EM ++G
Sbjct: 144 VSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEG 203

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +K +   +  V+ +C  L D+  G + H  + ++       + ++L+DMY KCG++E A+
Sbjct: 204 IKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESAR 263

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           K+FD M  K                                    +V+W T++ G+++SG
Sbjct: 264 KLFDSMTNK-----------------------------------TMVSWTTMVVGYAQSG 288

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
              M  KLF  M  K    DVV W ++I G VH     EA   F EM +    P   T+ 
Sbjct: 289 LLDMAWKLFDEMPDK----DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMV 344

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S L AC+    +  G  IH       +  ++ + +AL+DMYAKCG I++A  +F ++  R
Sbjct: 345 SCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR 404

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           N++TW ++I G A HG    AI  F++M +   + D ++F  +L+ACCH GLVE G++ F
Sbjct: 405 NSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYF 464

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + M  K+ + P+ +HY+CMVDLLGRAG L EA E+IK+M  E D  VWGAL  AC+ HGN
Sbjct: 465 SQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGN 524

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           + + E AA  L +++P  +   +LL ++Y  A
Sbjct: 525 VLMGERAASKLLQMDPHDSGIYVLLANMYGEA 556



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 144/353 (40%), Gaps = 36/353 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR-------------------- 133
           L  G+  H  +  +GL     +A  L+  Y +C N+  AR                    
Sbjct: 224 LDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVG 283

Query: 134 -----------MLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
                       LFDE+P  ++  W A+ G Y      +EA+ +F+EM    +  +   +
Sbjct: 284 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 343

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            S L AC  L  +  G  IH  + KH    +  + ++LIDMY+KCG + KA +VF E+  
Sbjct: 344 VSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPG 403

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           ++ +   A++SG    G A  A+    E+    V P+ VT+  L+S     G      K 
Sbjct: 404 RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKY 463

Query: 303 FQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           F  M +K  + P +  ++ ++  L      +EA +  K M  +     +    ++  AC 
Sbjct: 464 FSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEA---DAVVWGALFFACR 520

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
              N+  G+      + M    D  +   L +MY +     EA      M +R
Sbjct: 521 IHGNVLMGERAASKLLQMDPH-DSGIYVLLANMYGEAEMWKEAGKARKLMRQR 572



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 9/258 (3%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPACASAANMRRGKE 371
           P+  SW   I G + +    EA   +K +L   G  P + T   +  ACA  + +R G E
Sbjct: 69  PNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSE 128

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           I G  + +G + D+ V +A++ +   CG +  AR +FDK   R+ V+WNSMI G    G+
Sbjct: 129 ILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGW 188

Query: 432 CDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             EA+  + +M+ E  K D ++   V+++C  +  ++LG+     ++E    +      A
Sbjct: 189 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANA 248

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
            M D+  + G L  A ++  +M T   +  W  ++      G   L ++A K   E+  +
Sbjct: 249 LM-DMYMKCGNLESARKLFDSM-TNKTMVSWTTMVVGYAQSG---LLDMAWKLFDEMPDK 303

Query: 551 SAA--NNMLLTDLYANAG 566
                N M+   ++AN G
Sbjct: 304 DVVPWNAMIGGYVHANRG 321



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 2/161 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G  +H  +    L+    + T LI  Y +C  I  A  +F E+P  N   W A+  
Sbjct: 355 ALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIIS 414

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFG 211
             A  G    A+  F EM    +  +      +L AC H   +  G K  S +  K +  
Sbjct: 415 GLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS 474

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM 251
                 S ++D+  + G +E+A+++   M +E D V   A+
Sbjct: 475 PKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 515


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 180/502 (35%), Positives = 264/502 (52%), Gaps = 29/502 (5%)

Query: 71  SRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT-ECQNI 129
           +R+ + SP       + +   +  +  K LHA  I +G  +    A ++I F     ++I
Sbjct: 9   NRTLNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDI 68

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRG---YHQEAVTVFHEMHIQG-LKQNIFVIPSV 185
            +AR +F ++P+ N   W  +    A         EA+ +F  M   G +K N F  PSV
Sbjct: 69  DYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSV 128

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           LKAC   S +  G++IH L++K  F  D FV+S+L+ MY  C  +E A  +F     K++
Sbjct: 129 LKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC----KNV 184

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           V  +    G  Q            E+   +   NVV WN +I G  + GD      LF  
Sbjct: 185 VDFD----GSCQM-----------ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDE 229

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  + V    VSW  +ISG   N    EA + F+EM S    P   T+ S+LPA A    
Sbjct: 230 MPPRSV----VSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGA 285

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GK IH  A    VE D  + SALVDMY+KCG I +A  +F+ + +RN +TW+++I  
Sbjct: 286 LELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGA 345

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HG  ++AI  F+ M +     + +++  +L+AC H GLVE G+  F+ M +   + P
Sbjct: 346 FAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQP 405

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           R EHY CMVDLLGRAG L EA E+I+ M  EPD  +W ALLGACK H N+++ E  A+ L
Sbjct: 406 RIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETL 465

Query: 545 SELEPESAANNMLLTDLYANAG 566
            EL P  + + + L++LYA+ G
Sbjct: 466 MELAPHDSGSYVALSNLYASLG 487


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 172/506 (33%), Positives = 270/506 (53%), Gaps = 40/506 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +H  LI  G       A  L+  Y +      A  +F EIPK +I  W A+      
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              +  A+ +  +M    +  ++F + S LKAC  +  +  G ++HS ++K     D+FV
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFV 326

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
              LIDMYSKCG ++ A+ VFD M  KD++  N+++SGY   G   EA++L   +    +
Sbjct: 327 GVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGL 386

Query: 277 KPNVVTWNTLI--------SGFS--------KSGDQVM-------------------VSK 301
           + N  T +T++        +GF         KSG Q                      +K
Sbjct: 387 EFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAK 446

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F++  A+    D+V++TS+I+        +EA   +  M  +   P +   SS+  ACA
Sbjct: 447 VFEVCPAE----DLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACA 502

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + +   +GK+IH   +  G+  D+   ++LV+MYAKCG I +A  +F+++S R  V+W++
Sbjct: 503 NLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSA 562

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G A HG+  +A++LF QM +   L +H++  +VL+AC H GLV   +R F +M++ +
Sbjct: 563 MIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLF 622

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I P  EHYACMVD+LGR GRL EA  ++K M  +    VWGALLGA + H NIEL   A
Sbjct: 623 GITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHA 682

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A+ L  LEPE +  ++LL ++YA+ G
Sbjct: 683 AEMLLTLEPEKSGTHILLANIYASTG 708



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/525 (25%), Positives = 240/525 (45%), Gaps = 77/525 (14%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y + +  +   + + SG  +HA++I      L  +  +L+  Y++CQ    AR L  +  
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIR---LGLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK------------- 187
           + ++  W AL   Y + G  +EA+  ++EM++ G K N F   SVLK             
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 188 ---------------------------ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
                                      AC  L D   G K+H  ++K  + +D F  ++L
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           +DMY+K G  E A  VF E+ + DIV+ NA+++G V       AL L+ ++G+ RV P++
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 281 VTWNTLIS-----GFSKSGDQV---------------------MVSKLFQLMRAKGV--- 311
            T ++ +      G  K G Q+                     M SK   L  A+ V   
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 312 --EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
               DV+ W S+ISG  +   + EA   F  M  +G      T+S+IL + A +      
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
           +++H  +I  G + D +V ++L+D Y KC  + +A  +F+     + V + SMI   + +
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQY 469

Query: 430 GYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G  +EA++++ +M++R  K D   F+++  AC ++   E G+++ ++   K  ++     
Sbjct: 470 GLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQI-HVHVLKCGLLSDVFA 528

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
              +V++  + G + +A  +   +S    +  W A++G    HG+
Sbjct: 529 GNSLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQHGH 572



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + GK +H  ++  GL         L+  Y +C +I  A  +F+EI    I  W A+ G
Sbjct: 506 AYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIG 565

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+ G+ ++A+ +F++M   G+  N   + SVL AC H   +    +   L+ K  FG 
Sbjct: 566 GLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEK-LFGI 624

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240
                  + ++D+  + G +++A  +  EM
Sbjct: 625 TPTQEHYACMVDILGRVGRLDEAMVLVKEM 654


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 155/478 (32%), Positives = 265/478 (55%), Gaps = 11/478 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +++ K +H+++          +  KL+  Y        AR +FD IP+ N+  +  +  +
Sbjct: 48  IKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRS 107

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y     + +A+ VF +M   G   + +  P VLKAC    ++  G ++H  V K     +
Sbjct: 108 YMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLN 167

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV + LI +Y KCG + +A+ V DEM  KD+V+ N+MV+GY Q     +AL++  E+  
Sbjct: 168 LFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDG 227

Query: 274 PRVKPNVVTWNTLISGFSKSGDQ--VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
            R KP+  T  +L+   + +  +  + V ++F  +  K +    VSW  +IS  + N   
Sbjct: 228 VRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSL----VSWNVMISVYMKNSMP 283

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            ++ D + +M      P + T +S+L AC   + +  G+ IH       +  ++ + ++L
Sbjct: 284 GKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSL 343

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAIELFNQMEER-KKL 448
           +DMYA+CG + +A+ +FD+M  R+  +W S+I  +G    GY   A+ LF +M+   +  
Sbjct: 344 IDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGY--NAVALFTEMQNSGQSP 401

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D ++F A+L+AC H GL+  G+  F  M + YKI P  EH+AC+VDLLGR+GR+ EAY +
Sbjct: 402 DSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNI 461

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           IK M  +P+  VWGALL +C+ + N+++  +AA  L +L PE +   +LL+++YA AG
Sbjct: 462 IKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAG 519



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/423 (20%), Positives = 161/423 (38%), Gaps = 92/423 (21%)

Query: 53  KPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           + +++G F   HY  P +     L   + S+ + I         G  LH  +   GL   
Sbjct: 122 RDMVSGGFSPDHYTYPCV-----LKACSCSDNLRI---------GLQLHGAVFKVGLDLN 167

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
             +   LI  Y +C  +  AR + DE+   ++  W ++   YA+     +A+ +  EM  
Sbjct: 168 LFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM-- 225

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS--V 230
            G++Q                                   DA  ++SL+   +   S  V
Sbjct: 226 DGVRQK---------------------------------PDACTMASLLPAVTNTSSENV 252

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------- 283
              +++F  + +K +V+ N M+S Y++  +  ++++L  ++G   V+P+ +T        
Sbjct: 253 LYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRAC 312

Query: 284 ----------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
                                       N+LI  +++ G      ++F  M+ +    DV
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFR----DV 368

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK-EIHG 374
            SWTS+IS          A   F EM + G  P S    +IL AC+ +  +  GK     
Sbjct: 369 ASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQ 428

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNSMIFGCANHGYCD 433
                 +   +   + LVD+  + G + EA  +  +M  + N   W +++  C  +   D
Sbjct: 429 MTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMD 488

Query: 434 EAI 436
             I
Sbjct: 489 IGI 491


>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 490

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 166/471 (35%), Positives = 251/471 (53%), Gaps = 50/471 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR-RG 158
           +HA  +  GL    QI +  ++  T    I +A  +F+     NI  + ++  A++    
Sbjct: 28  IHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATTIFNHTHHPNILLFNSIIKAHSSFPP 87

Query: 159 YHQEAVTVFHEMHIQGLKQNI----FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           +HQ     FH  ++  +  NI    F  P +LKA  +L D   G+ +H+ V    F   +
Sbjct: 88  FHQS----FHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHS 143

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            V   L+++YS CG +E A KVFDEM+ ++                              
Sbjct: 144 PVEIGLLEVYSNCGKMEDANKVFDEMLHRE------------------------------ 173

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                VV WN +I+GF K GD  +  KLF+ M  +     VVSW  +IS L     + EA
Sbjct: 174 -----VVVWNIMINGFCKMGDLEIGLKLFKRMGQR----SVVSWNLMISCLAQRKKDGEA 224

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVD 393
           F  F+EML QGF P  AT+ ++LP CA   ++  G+ IH  A   G+    + V ++LVD
Sbjct: 225 FGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVD 284

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS- 452
            Y KCG +  A  +F++M+++N V+WN+MI G   +G  +  +ELF +M  +      S 
Sbjct: 285 FYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDST 344

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  VL  C H G V+ G+ +F+ M  K+K+ P+ EHY C+VDLLGR G + EAY++I+ M
Sbjct: 345 FVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNM 404

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
              P+  +WGALL AC+ HG+ E+AEIAAK L  LEP ++ N +LL+++YA
Sbjct: 405 PLMPNAALWGALLSACRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYA 455



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 164/390 (42%), Gaps = 54/390 (13%)

Query: 55  LINGIFIEAHYKMPIISRSFH----------LSPAAYS----ERIEIYIRDRALQSGKIL 100
           L N I I+AH   P   +SFH          + P  ++     +   Y+RD  L  G+ L
Sbjct: 74  LFNSI-IKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDL--GQCL 130

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY------ 154
           HA +   G  R + +   L+  Y+ C  +  A  +FDE+    +  W  +   +      
Sbjct: 131 HAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDL 190

Query: 155 -------------------------ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
                                    A+R    EA  +F EM  QG + +   + +VL  C
Sbjct: 191 EIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVC 250

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
             L D+  GE IHS             V +SL+D Y KCG++E A KVF+EM +K++V+ 
Sbjct: 251 ARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSW 310

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           NAM+SG    G     + L E++    V P+  T+  +++  + +G      ++F  M  
Sbjct: 311 NAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTV 370

Query: 309 K-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           K  + P +  +  V+  L       EA+D  + M      P +A   ++L AC +  + R
Sbjct: 371 KFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNM---PLMPNAALWGALLSACRTHGD-R 426

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
              EI    +V    G+      L ++YA+
Sbjct: 427 EVAEIAAKELVRLEPGNSGNYVLLSNVYAE 456



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 118/282 (41%), Gaps = 18/282 (6%)

Query: 39  QLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGK 98
            L++SC       G+    GIF E      ++ + F    A     + +  R   + +G+
Sbjct: 209 NLMISCLAQRKKDGEAF--GIFRE------MLEQGFEPDDATLVTVLPVCARLGDVDAGE 260

Query: 99  ILHAQLIVSGLAR-LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
            +H+     GL R +  +   L+ FY +C N+  A  +F+E+ K N+  W A+       
Sbjct: 261 WIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLN 320

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFGTDAFV 216
           G  +  V +F +M  +G+  +      VL  C H   +  G +I  S+ +K         
Sbjct: 321 GKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEH 380

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-- 274
              ++D+  +CG V++A  +   M     +  NA + G +     T     V EI     
Sbjct: 381 YGCVVDLLGRCGHVKEAYDLIRNMP----LMPNAALWGALLSACRTHGDREVAEIAAKEL 436

Query: 275 -RVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
            R++P N   +  L + +++      V K+  LM+  G++ +
Sbjct: 437 VRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKN 478


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 169/509 (33%), Positives = 267/509 (52%), Gaps = 71/509 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD-------------- 137
           R L++GK +H+ ++  GL     ++  L+  Y +C +   A+++FD              
Sbjct: 160 RCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMI 219

Query: 138 -----------------EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQNI 179
                            ++ + +I  W ++   Y +RGY   A+ +F +M     L  + 
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDR 279

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F + SVL AC +L  +  GE+IHS ++   F     V+++LI MYS+CG           
Sbjct: 280 FTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCG----------- 328

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
                              G+ T A  L+E+ GT  +K  +  +  L+ G+ K GD    
Sbjct: 329 -------------------GVET-ARRLIEQRGTKDLK--IEGFTALLDGYIKLGDMNEA 366

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             +F  ++ +    DVV+WT++I G   +    EA + F+ M+ +   P S T++++L  
Sbjct: 367 KNIFDSLKDR----DVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSV 422

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
            +S A++  GK+IHG A+  G    + V +AL+ MYAK G I+ A   FD +  ER+TV+
Sbjct: 423 ASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVS 482

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W SMI   A HG+ +EA+ELF  M  E  + DH+++  V +AC H GLV  G++ F+MM+
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +  KI+P   HYACMVDL GRAG L EA E I+ M  EPD+  WG+LL AC+ + NI+L 
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLG 602

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++AA+ L  LEPE++     L +LY+  G
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACG 631



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 231/483 (47%), Gaps = 56/483 (11%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           + +++H ++I SGL     +   L+  Y++     HAR LFDE+P      W  +  AYA
Sbjct: 32  TAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYA 91

Query: 156 RRG--------------------------------YHQEAVTVFHEMHIQGLKQNIFVIP 183
           +RG                                YH+ A+ +  EM  +G++ + F + 
Sbjct: 92  KRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHK-AIRIMGEMMREGIEPSQFTLT 150

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           +VL +      + TG+K+HS ++K     +  V +SL++MY+KCG    AK VFD MV K
Sbjct: 151 NVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVK 210

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           DI + NAM++ ++Q G    A+   E++     + ++VTWN++ISG+++ G  +    +F
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMA----ERDIVTWNSMISGYNQRGYDLRALDMF 266

Query: 304 -QLMRAKGVEPDVVSWTSVISGL--VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA- 359
            +++R   + PD  +  SV+S    +   C  E   +   +++ GF  +   +++++   
Sbjct: 267 SKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS--HIVTTGFDISGIVLNALISMY 324

Query: 360 --CASAANMRRGKEIHGCAIVMGVEGDLHVR--SALVDMYAKCGFISEARTLFDKMSERN 415
             C      RR  E  G         DL +   +AL+D Y K G ++EA+ +FD + +R+
Sbjct: 325 SRCGGVETARRLIEQRGTK-------DLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRD 377

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V W +MI G   HG   EAI LF  M  E ++ +  +  A+L+    +  +  G+++  
Sbjct: 378 VVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHG 437

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
              +  +I   +   A ++ +  +AG +  A      +  E D   W +++ A   HG+ 
Sbjct: 438 SAVKSGEIYSVSVSNA-LITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496

Query: 535 ELA 537
           E A
Sbjct: 497 EEA 499



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 175/383 (45%), Gaps = 12/383 (3%)

Query: 33  ALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDR 92
           ++LS  +  L+   SA    + L  G  I +H    I++  F +S    +  I +Y R  
Sbjct: 273 SMLSPDRFTLASVLSACANLEKLCIGEQIHSH----IVTTGFDISGIVLNALISMYSRCG 328

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            +++ + L  Q     L    +  T L+  Y +  +++ A+ +FD +   ++  W A+  
Sbjct: 329 GVETARRLIEQRGTKDLK--IEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIV 386

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G + EA+ +F  M  +  + N + + ++L     L+ +G G++IH   +K     
Sbjct: 387 GYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIY 446

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
              V ++LI MY+K GS+  A + FD +  E+D V+  +M+    Q G A EAL L E +
Sbjct: 447 SVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR-AKGVEPDVVSWTSVISGLVHNFC 330
               ++P+ +T+  + S  + +G      + F +M+    + P +  +  ++        
Sbjct: 507 LMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGL 566

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA +  ++M  +   P   T  S+L AC    N+  GK      +++  E      SA
Sbjct: 567 LQEAQEFIEKMPIE---PDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENS-GAYSA 622

Query: 391 LVDMYAKCGFISEARTLFDKMSE 413
           L ++Y+ CG   EA  +   M +
Sbjct: 623 LANLYSACGKWEEAAKIRKSMKD 645



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 348 PTSATISSILPACAS----AANMRRGK----EIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           P   ++S++L  C +    + N   G+     +H   I  G+   +++ + L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459
           +   AR LFD+M  R   +WN+++   A  G  D + E F+++ +R   D +S+T ++  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQR---DSVSWTTMIVG 120

Query: 460 CCHVGLVELGQRLFN-MMQE 478
             ++G      R+   MM+E
Sbjct: 121 YKNIGQYHKAIRIMGEMMRE 140


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 162/502 (32%), Positives = 260/502 (51%), Gaps = 30/502 (5%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R  ++G ++H Q IV G      + + ++  Y +   +  AR +FD +P+ +   W  + 
Sbjct: 133 RDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMI 192

Query: 152 GAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             Y +   + E++ VF ++  +   + +   +  +L A   L ++  G +IHSL  K   
Sbjct: 193 SGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGC 252

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            +  +V++  I +YSKCG ++ A  +F E    DIVA NAM+ GY   G    +L+L +E
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKE 312

Query: 271 IGTPRVKPNVVTWNTL------------ISGFSKSGD-----------QVMVSKLFQLMR 307
           +     K    T  +L            I G+S   +             + SKL ++  
Sbjct: 313 LMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIES 372

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ +     E  + SW ++ISG   N   ++A   F+EM +  F P   TI+ IL ACA 
Sbjct: 373 ARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQ 432

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK +H        E  ++V +AL+ MYAKCG I+EAR LFD M ++N VTWN+M
Sbjct: 433 LGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTM 492

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G   HG+  EA+ +F++M         ++F  VL AC H GLV+ G  +FN M  +Y 
Sbjct: 493 ISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYG 552

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
             P  +HYAC+VD+LGRAG L  A + I+ M  +P   VW  LLGAC+ H +  LA   +
Sbjct: 553 FEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVS 612

Query: 542 KHLSELEPESAANNMLLTDLYA 563
           + L EL+P++   ++LL+++++
Sbjct: 613 EKLFELDPDNVGYHVLLSNIHS 634



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 217/490 (44%), Gaps = 53/490 (10%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           ++++ R  ++      HAQ+++ G      + TKL    ++   I++AR +F  + + ++
Sbjct: 24  LDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDV 83

Query: 145 HRWIALTGAYARRGYHQEAVTVF-HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
             +  L   ++       ++ VF H      LK N       + A     D   G  IH 
Sbjct: 84  FLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHG 143

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY-------- 255
             +     ++  + S+++ MY K   VE A+KVFD M EKD +  N M+SGY        
Sbjct: 144 QAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVE 203

Query: 256 ---VQRGLATEALNLVEEIGTPRVKPNVVTWNTL-------------------------I 287
              V R L  E+   ++      + P V     L                         I
Sbjct: 204 SIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFI 263

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           S +SK G   M S LF+  R     PD+V++ ++I G   N   + +   FKE++  G  
Sbjct: 264 SLYSKCGKIKMASTLFREFR----RPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK 319

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             S+T+ S++P    + ++     IHG ++         V +AL  +Y+K   I  AR L
Sbjct: 320 LKSSTLVSLVPV---SGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKL 376

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLV 466
           FD+  E++  +WN+MI G   +G  ++AI LF +M+  +   + ++ T +L+AC  +G +
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGAL 436

Query: 467 ELGQRLFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
            LG+ + ++++    +  I   T     ++ +  + G +AEA  +   M  + ++  W  
Sbjct: 437 SLGKWVHDLVRSTDFESSIYVST----ALIGMYAKCGSIAEARRLFDFMPKKNEV-TWNT 491

Query: 524 LLGACKNHGN 533
           ++     HG+
Sbjct: 492 MISGYGLHGH 501



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 5/228 (2%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAANMRRGKE 371
           PDV  +  ++ G   N     +   F  +  S    P S+T +  + A +   + R G  
Sbjct: 81  PDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCV 140

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           IHG AIV G + +L + S +V MY K   + +AR +FD+M E++T+ WN+MI G   +  
Sbjct: 141 IHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEM 200

Query: 432 CDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
             E+I++F  +  E   +LD  +   +L A   +  + LG ++ ++   K          
Sbjct: 201 YVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLAT-KTGCYSHDYVL 259

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
              + L  + G++  A  + +     PD+  + A++    ++G  EL+
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFR-RPDIVAYNAMIHGYTSNGETELS 306


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 167/517 (32%), Positives = 268/517 (51%), Gaps = 61/517 (11%)

Query: 59  IFIEAHYKMPIISRS---FHLSP----AAYSERIEIYIRDRALQSGKILHAQLIVSGLAR 111
           + I +H    ++S +   F L+P     +++  +  Y+R+     G++  A+ + +    
Sbjct: 136 VMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN-----GRVEEARGLFNSRTE 190

Query: 112 LTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
              I+   L++ Y +   +  AR LFD +P  ++  W  +   YARRG   EA  +F   
Sbjct: 191 WDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAA 250

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
            ++                                       D F  ++++  Y++ G +
Sbjct: 251 PVR---------------------------------------DVFTWTAVVSGYAQNGML 271

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           E+A++VFD M E++ V+ NAMV+ Y+QR +  EA  L   +       NV +WNT+++G+
Sbjct: 272 EEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGY 327

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +++G       +F  M  K    D VSW ++++      C++E    F EM   G     
Sbjct: 328 AQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +  + +L  CA  A +  G ++HG  I  G      V +AL+ MY KCG + +AR  F++
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELG 469
           M ER+ V+WN+MI G A HG+  EA+E+F+ M     K D ++   VL AC H GLVE G
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
              F  M   + +  + EHY CM+DLLGRAGRLAEA++++K M  EPD  +WGALLGA +
Sbjct: 504 ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASR 563

Query: 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            H N EL   AA+ + ELEPE+A   +LL+++YA++G
Sbjct: 564 IHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSG 600



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 215/489 (43%), Gaps = 83/489 (16%)

Query: 94  LQSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G++  A+ + + + R  T     ++  Y+    +  A  LF  IP+ + + +  L  
Sbjct: 49  MRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLH 108

Query: 153 AYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV--LKHS 209
           A A      +A  +F EM ++  +  N+ +               +    H LV   +H 
Sbjct: 109 ALAVSSSLADARGLFDEMPVRDSVTYNVMI---------------SSHANHGLVSLARHY 153

Query: 210 FG----TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           F      DA   + ++  Y + G VE+A+ +F+   E D+++ NA++SGYVQ G  +EA 
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAR 213

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L + +       +VV+WN ++SG+++ GD V   +LF     +    DV +WT+V+SG 
Sbjct: 214 ELFDRM----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGY 265

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
             N   +EA   F  M  +     +A +++ +        M   KE+        V    
Sbjct: 266 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYI----QRRMMDEAKELFNMMPCRNVAS-- 319

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
              + ++  YA+ G + EA+ +FD M +++ V+W +M+   +  G  +E ++LF +M   
Sbjct: 320 --WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRL-------------------------------- 472
            + ++  +F  VL+ C  +  +E G +L                                
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 473 ---FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLG 526
              F  M+E+  +      +  M+    R G   EA   ++M++T ST+PD      +L 
Sbjct: 438 RNAFEEMEERDVV-----SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 527 ACKNHGNIE 535
           AC + G +E
Sbjct: 493 ACSHSGLVE 501



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 20/363 (5%)

Query: 57  NGIFIEAHYKMPIISRSFHLSP----AAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           NG+  EA        R F   P     +++  +  YI+ R +   K L   +    +A  
Sbjct: 268 NGMLEEAR-------RVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
                 ++T Y +   +  A+ +FD +P+ +   W A+  AY++ G  +E + +F EM  
Sbjct: 321 NT----MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            G   N      VL  C  ++ +  G ++H  +++  +G   FV ++L+ MY KCG++E 
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMED 436

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A+  F+EM E+D+V+ N M++GY + G   EAL + + + T   KP+ +T   +++  S 
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496

Query: 293 SG-DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           SG  +  +S  + +    GV      +T +I  L       EA D  K+M    F P S 
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM---PFEPDST 553

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
              ++L A     N   G+        +  E +  +   L ++YA  G   +AR +   M
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMM 612

Query: 412 SER 414
            ER
Sbjct: 613 EER 615



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 134/339 (39%), Gaps = 90/339 (26%)

Query: 275 RVKPNVV-------------------------------TWNTLISGFSKSGDQVMVSKLF 303
           R++P V+                               T+N +++G+S +G   + + LF
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS-------- 355
           + +      PD  S+ +++  L  +    +A   F EM  +     +  ISS        
Sbjct: 93  RAI----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVS 148

Query: 356 -------ILPACAS-------AANMRRGK--EIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
                  + P   +       AA +R G+  E  G       E D+   +AL+  Y + G
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL-FNSRTEWDVISWNALMSGYVQWG 207

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459
            +SEAR LFD+M  R+ V+WN M+ G A  G   EA  LF+    R   D  ++TAV++ 
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR---DVFTWTAVVSG 264

Query: 460 CCHVGLVELGQRLFNMMQEK------------------------YKIMP--RTEHYACMV 493
               G++E  +R+F+ M E+                        + +MP      +  M+
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
               +AG L EA  +  TM  + D   W A+L A    G
Sbjct: 325 TGYAQAGMLEEAKAVFDTM-PQKDAVSWAAMLAAYSQGG 362



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 34/169 (20%)

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-------------- 442
           + G +++A  LF  M  R+T T+N+M+ G + +G    A  LF  +              
Sbjct: 50  RAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHA 109

Query: 443 --------------EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
                         +E    D +++  ++++  + GLV L +  F++  EK  +      
Sbjct: 110 LAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV-----S 164

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +  M+    R GR+ EA  +  +  TE D+  W AL+      G +  A
Sbjct: 165 WNGMLAAYVRNGRVEEARGLFNS-RTEWDVISWNALMSGYVQWGKMSEA 212


>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 245/440 (55%), Gaps = 9/440 (2%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           ++  AR +FD +P+ N+  W ++   Y +RG  ++ + +F  M  +G++ N   +   L 
Sbjct: 210 SVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALD 269

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC   S    G +IH+L++   F  D F+  S+I MYS+ G +  AK+ FD M +KDIV+
Sbjct: 270 ACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVS 329

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            N++++GYVQ  +  EA  L + +     + + V+W +++ GF+  G      +LF+ M 
Sbjct: 330 WNSLITGYVQHDMVEEAHVLFKLMH----QKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            K    D V+WT++IS  + N     A   F  M  +G  P +   S +L A AS A + 
Sbjct: 386 VK----DEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLN 441

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +G++ H  +I MG   D  V ++LV MYAKCG ++EA  +F  +S  + +  NSMI    
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFV 501

Query: 428 NHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG+ ++A++LF +M+    K +H++F  +LT C   G V+ G   F  M+  Y + P  
Sbjct: 502 QHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           EHY CMVDLLGRAG LAEA EMI +M        W ALL A   H N+  A+IAA+ L E
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLE 621

Query: 547 LEPESAANNMLLTDLYANAG 566
            +P  A    +L+ ++++AG
Sbjct: 622 KDPYDATAYTVLSRMFSSAG 641



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 214/488 (43%), Gaps = 91/488 (18%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+T Y     +  A++LFD++P  ++  W AL  AYA  G    A  VF +M  +     
Sbjct: 44  LLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             ++   L+A    +      K+ +         +A    ++I   +K   + +A+ V++
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPA--------KNAVSYGAIISGLAKAEMLHEAELVYE 155

Query: 239 EMV--EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           EM    +D V  NA+++GY++ G    AL + E + T R   +V++W+ ++ G  K G  
Sbjct: 156 EMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGM-TVR---DVISWSAMVDGLCKHGSV 211

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F  M     E +VVSWTS+I G V      +    F  M  +G    + T+S  
Sbjct: 212 SEARRVFDAM----PERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVA 267

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG----------------- 399
           L ACA+A+  R G +IH   I MG E D+ +  +++ MY++ G                 
Sbjct: 268 LDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDI 327

Query: 400 --------------FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
                          + EA  LF  M +++ V+W SM+ G AN G+  E++ELF QM  +
Sbjct: 328 VSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVK 387

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYAC------------- 491
              D +++TA++++    G      R F  M QE  K  P T  ++C             
Sbjct: 388 ---DEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCK--PNTIAFSCLLSALASLAMLNQ 442

Query: 492 ----------------------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
                                 +V +  + GRLAEAY +  ++S  P L    +++ A  
Sbjct: 443 GRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFV 501

Query: 530 NHGNIELA 537
            HG +E A
Sbjct: 502 QHGFVEDA 509



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 152/337 (45%), Gaps = 37/337 (10%)

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L+  Y + G +  A+ +FD+M  +D+++  A+++ Y   G    A  + +++  PR 
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDM--PRR 98

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             N  +WN L+S + ++        LF  M AK    + VS+ ++ISGL       EA  
Sbjct: 99  --NAPSWNALLSVYLRAARPRAAHALFYKMPAK----NAVSYGAIISGLAKAEMLHEAEL 152

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMY 395
            ++EM  Q   P  +           A  +R G+      +  G+   D+   SA+VD  
Sbjct: 153 VYEEMPWQWRDPVGSN-------ALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFT 454
            K G +SEAR +FD M ERN V+W SMI G    G C + + LF N   E  +++  + +
Sbjct: 206 CKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLS 265

Query: 455 AVLTACCHVGLVELGQRLFNMMQE---------KYKIMPRTEHYACMVDLLGRAGRLAEA 505
             L AC    L   G ++ N++              I+     + CMVD          A
Sbjct: 266 VALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVD-------AKRA 318

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           ++ ++    + D+  W +L+     H  +E A +  K
Sbjct: 319 FDCMQ----QKDIVSWNSLITGYVQHDMVEEAHVLFK 351


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/506 (32%), Positives = 258/506 (50%), Gaps = 40/506 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ LHA  + + L     + + L+  Y     I  +  +F E+P  N   W A+      
Sbjct: 127 GESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVH 186

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++E +T F EM       + +     LKAC  L  +  G+ IH+ V+   F T   V
Sbjct: 187 AGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCV 246

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SL  MY++CG ++    +F+ M E+D+V+  +++  Y + G   +A+    ++   +V
Sbjct: 247 ANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQV 306

Query: 277 KPNVVT---------------W--------------------NTLISGFSKSGDQVMVSK 301
            PN  T               W                    N+++  +S  G+ V  S 
Sbjct: 307 PPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASV 366

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LFQ MR +    D++SW+++I G       +E F  F  M   G  PT   ++S+L    
Sbjct: 367 LFQGMRCR----DIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSG 422

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A +  G+++H  A+  G+E +  VRS+L++MY+KCG I EA  +F +    + V+  +
Sbjct: 423 NMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTA 482

Query: 422 MIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G A HG   EAI+LF + ++   + D ++F +VLTAC H G ++LG   FNMMQE Y
Sbjct: 483 MINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHYFNMMQETY 542

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            + P  EHY CMVDLL RAGRL++A +MI  MS + D  VW  LL ACK  G+IE    A
Sbjct: 543 NMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAKGDIERGRRA 602

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A+ + EL+P  A   + L ++Y++ G
Sbjct: 603 AERILELDPTCATALVTLANIYSSTG 628



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 208/443 (46%), Gaps = 44/443 (9%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI--QGLKQNIFVIPSV 185
           N+  AR +FD++P  +I  W ++   Y       EA+ +F  M +    +  +  V+  V
Sbjct: 55  NLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVV 114

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           LKACG  S+I  GE +H+  +K S  +  +V SSL+DMY + G ++K+ +VF EM  ++ 
Sbjct: 115 LKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNA 174

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEI--------------------GTPRVK-------- 277
           V   A+++G V  G   E L    E+                    G  +VK        
Sbjct: 175 VTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTH 234

Query: 278 -------PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                    +   N+L + +++ G+      LF+ M     E DVVSWTS+I        
Sbjct: 235 VIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMS----ERDVVSWTSLIVAYKRIGQ 290

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             +A +TF +M +    P   T +S+  ACAS + +  G+++H   + +G+   L V ++
Sbjct: 291 EVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNS 350

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLD 449
           ++ MY+ CG +  A  LF  M  R+ ++W+++I G    G+ +E  + F+ M +   K  
Sbjct: 351 MMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPT 410

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
             +  ++L+   ++ ++E G R  + +   + +   +   + ++++  + G + EA  MI
Sbjct: 411 DFALASLLSVSGNMAVIE-GGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEA-SMI 468

Query: 510 KTMSTEPDLFVWGALLGACKNHG 532
              +   D+    A++     HG
Sbjct: 469 FGETDRDDIVSLTAMINGYAEHG 491



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 178/420 (42%), Gaps = 76/420 (18%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R ++ GK +H  +IV G      +A  L T YTEC  +     LF+ + + ++  W +L 
Sbjct: 223 RQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLI 282

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AY R G   +AV  F +M    +  N     S+  AC  LS +  GE++H  VL     
Sbjct: 283 VAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLN 342

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V +S++ MYS CG++  A  +F  M  +DI++ + ++ GY Q G   E       +
Sbjct: 343 DSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWM 402

Query: 272 GTPRVKP-----------------------------------NVVTWNTLISGFSKSGDQ 296
                KP                                   N    ++LI+ +SK G  
Sbjct: 403 RQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSI 462

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              S +F     +    D+VS T++I+G   +  + EA D F++ L  GF P S T  S+
Sbjct: 463 KEASMIF----GETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISV 518

Query: 357 LPACASAA----------------NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           L AC  +                 NMR  KE +GC               +VD+  + G 
Sbjct: 519 LTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGC---------------MVDLLCRAGR 563

Query: 401 ISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLT 458
           +S+A  + ++MS +++ V W +++  C   G     IE   +  ER  +LD    TA++T
Sbjct: 564 LSDAEKMINEMSWKKDDVVWTTLLIACKAKG----DIERGRRAAERILELDPTCATALVT 619



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 38/335 (11%)

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE--EIGTPRVKPNVVTWNT 285
           G++  A++VFD+M   DIV+  +++  YV    + EAL L     +    V P+    + 
Sbjct: 54  GNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSV 113

Query: 286 LISGFSKS------------------------GDQVM-----VSKLFQLMRAKGVEP--D 314
           ++    +S                        G  ++     V K+ +  R     P  +
Sbjct: 114 VLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRN 173

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
            V+WT++I+GLVH     E    F EM        + T +  L ACA    ++ GK IH 
Sbjct: 174 AVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHT 233

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
             IV G    L V ++L  MY +CG + +   LF+ MSER+ V+W S+I      G   +
Sbjct: 234 HVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVK 293

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACM 492
           A+E F +M   +   +  +F ++ +AC  +  +  G++L  N++     +         M
Sbjct: 294 AVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLS--LGLNDSLSVSNSM 351

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           + +    G L  A  + + M    D+  W  ++G 
Sbjct: 352 MKMYSTCGNLVSASVLFQGMRCR-DIISWSTIIGG 385



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 16/155 (10%)

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           +++  + + H+RS +       G +  AR +FDKM   + V+W S+I         DEA+
Sbjct: 37  VMVKFDPNSHLRSLI-----NAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEAL 91

Query: 437 ELFNQMEERKKLDHL------SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
            LF+ M   + +DH         + VL AC     +  G+ L +    K  ++      +
Sbjct: 92  ILFSAM---RVVDHAVSPDTSVLSVVLKACGQSSNIAYGESL-HAYAVKTSLLSSVYVGS 147

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            ++D+  R G++ ++  +   M    +   W A++
Sbjct: 148 SLLDMYKRVGKIDKSCRVFSEMPFR-NAVTWTAII 181


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 168/509 (33%), Positives = 264/509 (51%), Gaps = 38/509 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  GK +HAQ++ +G     +I T L++ Y +  ++  AR +FD +   ++  +  + G
Sbjct: 173 GLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVG 232

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G  ++A  +F+ M   GLK N     S+L  C     +  G+ +H+  +      
Sbjct: 233 GYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVD 292

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V +SLI MY+ CGS+E A++VFD M  +D+V+   M+ GY + G   +A  L   + 
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQ 352

Query: 273 TPRVKPNVVTWNTL---------------------ISGFSKSGDQVMVSKLFQLMRAK-- 309
              ++P+ +T+  +                     I+GF   G  ++VS     M AK  
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGF---GTDLLVSTALVHMYAKCG 409

Query: 310 ---------GVEP--DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
                       P  DVVSW+++I   V N    EAF+TF  M      P   T  ++L 
Sbjct: 410 AIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLN 469

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           AC     +  G EI+  AI   +   + + +AL+ M AK G +  AR +FD M  R+ +T
Sbjct: 470 ACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVIT 529

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G + HG   EA+ LF++M +ER + + ++F  VL+AC   G V+ G+R F  + 
Sbjct: 530 WNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLL 589

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E   I+P  + Y CMVDLLGRAG L EA  +IK+M  +P   +W +LL AC+ HGN+++A
Sbjct: 590 EGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVA 649

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E AA+    ++P   A  + L+ +YA AG
Sbjct: 650 ERAAERCLMIDPYDGAVYVQLSHMYAAAG 678



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 145/512 (28%), Positives = 247/512 (48%), Gaps = 57/512 (11%)

Query: 58  GIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIAT 117
           G  I++   + +  R   L  AA  +++    RD  +Q G+ L+          + ++ T
Sbjct: 52  GNHIDSRTYVKLFQRCTELRDAALGKQV----RDHIIQGGRQLN----------IYELNT 97

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            LI  Y+ C N+  AR +FD +    +  W AL   YA+ G+ +EA  +F +M  +GL+ 
Sbjct: 98  -LIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEP 156

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +I    SVL AC   + +  G+++H+ V+   F +D  + ++L+ MY K GS++ A++VF
Sbjct: 157 SIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVF 216

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG-------- 289
           D +  +D+   N MV GY + G   +A  L   +    +KPN +++ +++ G        
Sbjct: 217 DGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALA 276

Query: 290 ---------------------------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
                                      ++  G      ++F  M+ +    DVVSWT +I
Sbjct: 277 WGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVR----DVVSWTVMI 332

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
            G   N   ++AF  F  M  +G  P   T   I+ ACA +AN+   +EIH    + G  
Sbjct: 333 EGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFG 392

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            DL V +ALV MYAKCG I +AR +FD M  R+ V+W++MI     +GY  EA E F+ M
Sbjct: 393 TDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLM 452

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           +    + D +++  +L AC H+G +++G  ++     K  ++        ++ +  + G 
Sbjct: 453 KRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAI-KADLVSHVPLGNALIIMNAKHGS 511

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           +  A  +  TM    D+  W A++G    HGN
Sbjct: 512 VERARYIFDTM-VRRDVITWNAMIGGYSLHGN 542



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 48/299 (16%)

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           N+   NTLI  +S  G+     ++F  +  K     VV+W ++I+G        EAF  F
Sbjct: 91  NIYELNTLIKLYSICGNVTEARQIFDSVENK----TVVTWNALIAGYAQVGHVKEAFALF 146

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           ++M+ +G  P+  T  S+L AC+S A +  GKE+H   +  G   D  + +ALV MY K 
Sbjct: 147 RQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKG 206

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVL 457
           G + +AR +FD +  R+  T+N M+ G A  G  ++A ELF +M++   K + +SF ++L
Sbjct: 207 GSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSIL 266

Query: 458 TACC----------------HVGLV-------------------ELGQRLFNMMQEKYKI 482
             C                 + GLV                   E  +R+F+ M+ +  +
Sbjct: 267 DGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVV 326

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACKNHGNIELAE 538
                 +  M++     G + +A+ +  TM  E   PD   +  ++ AC    N+  A 
Sbjct: 327 -----SWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAR 380


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 169/504 (33%), Positives = 267/504 (52%), Gaps = 44/504 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALTGAYARRG 158
           LH+ +  +G    + +++ LI  Y++   +  +  +F E+  T N+  W  +  A+A+ G
Sbjct: 371 LHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSG 430

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
               AV +F  M  +GL+ + F   SVL     LS    G  IH  +LK    TD  V S
Sbjct: 431 STGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLS---LGRLIHCYILKIGLFTDISVGS 487

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           SL  MYSKCGS+E++  VF++M +KD V+  +M++G+ +   A +A+ L  E+    ++P
Sbjct: 488 SLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRP 547

Query: 279 N-----------------------------------VVTWNTLISGFSKSGDQVMVSKLF 303
           +                                   V+    L++ +SK G  V+  ++F
Sbjct: 548 DQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVF 607

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
            ++  K    D  S +S++SG   N   ++A   F E+        S T+SS++ A A  
Sbjct: 608 DMLPQK----DQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAIL 663

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            ++  G ++H C   MG+  ++ V S+LV MY+KCG I E   +F+++ + + ++W +MI
Sbjct: 664 NSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMI 723

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              A HG   EA+++++ M +E  K D ++F  VL+AC H G+VE G    N M ++Y I
Sbjct: 724 VSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGI 783

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P   HYACMVDLLGR+GRL EA   I  M  EPD  +WG LL ACK HG+IEL  +AAK
Sbjct: 784 EPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAK 843

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            + ELEP  A   + L+++ A+ G
Sbjct: 844 RVIELEPCEAGAYVTLSNICADMG 867



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 233/502 (46%), Gaps = 41/502 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATK-LITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L++ KILHA  + + + +     T  L+ +Y +  ++ HA  LFD+ P  N+  W  L  
Sbjct: 61  LRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILIS 120

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              +    +++   F +M   G   N F   SVL AC  L     GE ++SL LK+ F +
Sbjct: 121 GCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFS 180

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           + +V + +ID+++K  S E A +VF +++ +++V  NA++SG V+      AL+L  ++ 
Sbjct: 181 NGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMC 240

Query: 273 TPRVKPNVVTWNTLISG--------FSK----------SGDQVMVSKLFQLMRAKGVEPD 314
                PN  T++++++         F +          +G+ V V      + AK  + D
Sbjct: 241 CRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMD 300

Query: 315 -------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                        VVSWT++ISG V    +  AF  FKEM   G    + TI+S+L AC 
Sbjct: 301 QAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACT 360

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWN 420
               ++   ++H      G   D +V SAL++MY+K G +  +  +F +M S +N   W 
Sbjct: 361 EPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWA 420

Query: 421 SMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
            MI   A  G    A+ELF +M +E  + D    ++VL+    +  + LG RL +    K
Sbjct: 421 VMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSI---IDSLSLG-RLIHCYILK 476

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
             +       + +  +  + G L E+Y + + M  + D   W +++     H + E A  
Sbjct: 477 IGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMP-DKDNVSWASMITGFSEHDHAEQAVQ 535

Query: 540 AAKH--LSELEPESAANNMLLT 559
             +   L E+ P+       LT
Sbjct: 536 LFREMLLEEIRPDQMTLTAALT 557



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 183/392 (46%), Gaps = 42/392 (10%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L P  +     + I D +L  G+++H  ++  GL     + + L T Y++C ++  +  +
Sbjct: 447 LRPDKFCSSSVLSIID-SLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTV 505

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           F+++P  +   W ++   ++   + ++AV +F EM ++ ++ +   + + L AC  L  +
Sbjct: 506 FEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSL 565

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G+++H   L+   G +  V  +L++MYSKCG++  A++VFD + +KD  + +++VSGY
Sbjct: 566 EKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGY 625

Query: 256 VQRGLATEALNLVEE---------------------------IGTP--------RVKPNV 280
            Q G   +AL L  E                           IGT          +   V
Sbjct: 626 AQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEV 685

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
              ++L++ +SK G      K+F+ +     +PD++SWT++I     +    EA   +  
Sbjct: 686 SVGSSLVTMYSKCGSIDECHKVFEQIE----KPDLISWTAMIVSYAQHGKGAEALKVYDL 741

Query: 341 MLSQGFCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           M  +G  P S T   +L AC+    +  G   ++  A   G+E   +  + +VD+  + G
Sbjct: 742 MRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSG 801

Query: 400 FISEARTLFDKMS-ERNTVTWNSMIFGCANHG 430
            + EA    + M  E + + W  ++  C  HG
Sbjct: 802 RLKEAERFINNMPIEPDALLWGILLAACKVHG 833


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 182/563 (32%), Positives = 284/563 (50%), Gaps = 71/563 (12%)

Query: 73  SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           ++ L    +   ++  I  R L +GKILHA    S +   T ++      Y++C ++H+A
Sbjct: 4   TYPLQLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNA 63

Query: 133 -------------------------------RMLFDEIPKTNIHRWIALTGAYARRGYHQ 161
                                          R +FDEIP+ +I  +  L  AYA RG   
Sbjct: 64  QTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECG 123

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
             + +F E+    L  + F +  V+ ACG   D+G   ++H  V+       A V ++++
Sbjct: 124 PTLRLFEEVRELRLGLDGFTLSGVITACG--DDVGLVRQLHCFVVVCGHDCYASVNNAVL 181

Query: 222 DMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
             YS+ G + +A++VF EM E   +D V+ NAM+    Q     EA+ L  E+    +K 
Sbjct: 182 ACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKV 241

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG---------------------------- 310
           ++ T  ++++ F+   D V   +   +M   G                            
Sbjct: 242 DMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKV 301

Query: 311 ----VEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 PD+V W ++ISG  ++   +++    F+EM   GF P   +   +  AC++ ++
Sbjct: 302 FEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSS 361

Query: 366 MRRGKEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
              GK++H  AI   V  + + V +ALV MY+KCG + +AR +FD M E NTV+ NSMI 
Sbjct: 362 PSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIA 421

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A HG   E++ LF  M E+    + ++F AVL+AC H G VE GQ+ FNMM+E++ I 
Sbjct: 422 GYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIE 481

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P  EHY+CM+DLLGRAG+L EA  +I+TM   P    W  LLGAC+ HGN+ELA  AA  
Sbjct: 482 PEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANE 541

Query: 544 LSELEPESAANNMLLTDLYANAG 566
              LEP +AA  ++L+++YA+A 
Sbjct: 542 FLRLEPYNAAPYVMLSNMYASAA 564


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/480 (32%), Positives = 263/480 (54%), Gaps = 58/480 (12%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  ++   +++ + +AT+++      + + HA  +F ++   N+H   A+  AYA+   
Sbjct: 33  VHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQ 92

Query: 160 HQEAVTVFHEM----------HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           H++AV V+  M          H  G +   F  P +LKACG  + +  G+++H+ V++  
Sbjct: 93  HRDAVAVYIRMLRCPTSPPDGHAGGDR---FTYPFLLKACGGTAALELGKQVHTHVVRSG 149

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             + A V +SLI+MY++ G +  A KVFDEM E+D                         
Sbjct: 150 CDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD------------------------- 184

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVISGLVH 327
                     VV+WN LIS  ++ G     + LF  M      PD  +V+WT+++SG   
Sbjct: 185 ----------VVSWNMLISAHARLGQMRKATALFNSM------PDKTIVTWTAMVSGYTT 228

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                 A D F+ M ++GF P   +I ++LPACA    +  G+ I+      G+    H+
Sbjct: 229 VGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHI 288

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            +AL++MYAKCG I +A  LFD M++++ ++W+++I G A HG   EA+ LF +ME+  K
Sbjct: 289 CNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGK 348

Query: 448 L--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
           +  + ++F  +L+AC + GLV+ G   F+ M + Y + P  EHY C+VDLLGR+G++  A
Sbjct: 349 VRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRA 408

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            ++++ M    D  VWG+LL AC++HG+++ A +AA+ L ELEP+   N ++L ++YA A
Sbjct: 409 LDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAA 468



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 40/309 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH---------------------- 130
           AL+ GK +H  ++ SG      +   LI  YT   ++                       
Sbjct: 134 ALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLIS 193

Query: 131 -HARM--------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            HAR+        LF+ +P   I  W A+   Y   G +  AV  F  M  +G + +   
Sbjct: 194 AHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVS 253

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           I +VL AC  L  +  G  I++   +H   T   + ++L++MY+KCG +++A ++FD M 
Sbjct: 254 IVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMA 313

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGFSKSG--DQVM 298
           +KD+++ + ++ G    G A EA+ L  E+    +V+PNV+T+  L+S  S +G  D+ +
Sbjct: 314 DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGL 373

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI-SSIL 357
            S   ++    GVEP V  +  V+  L  +     A D  ++M      P  A +  S+L
Sbjct: 374 -SHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMP----VPADAKVWGSLL 428

Query: 358 PACASAANM 366
            AC S  ++
Sbjct: 429 SACRSHGDV 437


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/507 (30%), Positives = 272/507 (53%), Gaps = 36/507 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +HA+++ S +     + + LI  Y  C ++  AR  F++I   ++  W +L  A
Sbjct: 260 LVDGKAIHARIVSSNMES-DFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTA 318

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +  +++EA+ ++  M  +G+  +     + L AC  L  +  G+ IHS V +  F + 
Sbjct: 319 YVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQS- 377

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             V ++L+ MY+KCG ++ A+ VF+ + +K ++    AM+S Y Q G   EAL L +++ 
Sbjct: 378 LVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMV 437

Query: 273 TPRVKPNVVTWNTLISGFSKSGD------------------QVMVSKLFQLMRAK----- 309
               +PN  T++ +++  S SGD                   V V      M AK     
Sbjct: 438 AEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLE 497

Query: 310 --------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                       D+VSW ++I     +    EA D ++ M SQG  P   TI+S L ACA
Sbjct: 498 LAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACA 557

Query: 362 SAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            + +++ G+EIH   +        L V++ALV+MY +CG +  AR++F+ M +R+ ++W 
Sbjct: 558 ISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWT 617

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +M    A  G+ D+ ++L+ +M     + + ++FT++L  C H GL+  G   F  MQ +
Sbjct: 618 AMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSE 677

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           ++++P  EH+ CMVDLLGR+GRL +A  ++++M  +PD   W  +LG+CK H + + A+ 
Sbjct: 678 HEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKR 737

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA+ + EL+PE+ +   LL+ ++  AG
Sbjct: 738 AARRVKELDPENTSLYSLLSSIFTAAG 764



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 229/488 (46%), Gaps = 43/488 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y E ++   R  +L  GK++H  L+ +G  R   +   LI  Y  C  IH AR  F    
Sbjct: 45  YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFA 104

Query: 141 KTN-IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
               +  +  +  AY + G    A+ ++H M  +G + +      VL +C  +  +    
Sbjct: 105 SIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAR 164

Query: 200 KIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           +IH+ +++       +  + ++L++MY KCGSVE+A+KVFD +  +D V+  +M+S Y  
Sbjct: 165 EIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYAN 224

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNT-------------------------------L 286
            G   EAL+L +++    ++P+ +T+ +                               L
Sbjct: 225 NGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDFVGSAL 284

Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           I+ +++ GD     + F+ ++ K     VV WTS+++  V      EA D +  M  +G 
Sbjct: 285 INMYARCGDVSSARQAFEKIQNK----HVVCWTSLMTAYVQTCHYREALDLYGRMDHEGV 340

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
                T  + L ACAS   ++ GK IH      G +  L V +AL+ MYAKCG +  AR 
Sbjct: 341 HADGVTYVTALGACASLGALKEGKAIHSRVFECGFQ-SLVVHTALLTMYAKCGELDAARA 399

Query: 407 LFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVG 464
           +F+++ + RN   W +MI   A  G+  EA+EL++QM  E  + +  +F+ VL AC   G
Sbjct: 400 VFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSG 459

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
            +E G ++   + E  ++         +V +  + G L  A    +  S   DL  W A+
Sbjct: 460 DLEAGMKIHGHV-ENSELASNVAVQNALVTMYAKCGSLELAKSAFEA-SGRKDLVSWNAM 517

Query: 525 LGACKNHG 532
           +GA   HG
Sbjct: 518 IGAYAQHG 525



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 42/390 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALT 151
           AL+ GK +H+++   G   L  + T L+T Y +C  +  AR +F+ +  K N++ W A+ 
Sbjct: 359 ALKEGKAIHSRVFECGFQSLV-VHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMI 417

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYA+ G+ QEA+ ++ +M  +G + N +   +VL AC    D+  G KIH  V      
Sbjct: 418 SAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELA 477

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           ++  V ++L+ MY+KCGS+E AK  F+    KD+V+ NAM+  Y Q GL  EAL+L + +
Sbjct: 478 SNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTM 537

Query: 272 GTPRVKPNVVTWNTLISGFSKSG---------DQVMVSKLF------------------Q 304
            +  V P+ VT  + +S  + SG          +V+ ++ F                  +
Sbjct: 538 TSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGR 597

Query: 305 LMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           L  A+ +     + DV+SWT++ S        D+  D + EM+  G  P   T +SIL  
Sbjct: 598 LETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVG 657

Query: 360 CASAANMRRGKEIHGCAIVMGVEGD-LHVRS---ALVDMYAKCGFISEARTLFDKMS-ER 414
           C+ A  + RG E   C + M  E + + +R     +VD+  + G + +A  L + M  + 
Sbjct: 658 CSHAGLLARGVE---CFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQP 714

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           ++V W +++  C  H   D A     +++E
Sbjct: 715 DSVAWLTVLGSCKTHSDADTAKRAARRVKE 744


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 170/507 (33%), Positives = 269/507 (53%), Gaps = 36/507 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH  +I +  A    +A  L+  Y +   +  AR  F+ +   +   W A+   
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +  Y+ EA  +F  M   G+  +   + S++ AC ++ ++  G++ H L++K    T 
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTS 545

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               SSLIDMY KCG V  A+ VF  M  +++V++NA+++GY   G   EA++L +EI  
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQM 604

Query: 274 PRVKPNVVTWNTLISG---------------------FSKSGDQVMVSKLFQLMRAK--- 309
             +KP  VT+  L+ G                     F  S + V VS L   M ++   
Sbjct: 605 VGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFV 664

Query: 310 ---------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                         +V WT++ISG      +++A   ++ M S    P  A  +S+L AC
Sbjct: 665 DSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRAC 724

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV-TW 419
           A  ++++ G+EIH      G   D    S+L+DMYAKCG +  +  +F +M  RN V +W
Sbjct: 725 AGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISW 784

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSMI G A +GY +EA+E+F QME++  + D ++F  VL+AC H G V  G+++F++M  
Sbjct: 785 NSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVN 844

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            YK+ PR +H  CMVD+LGR G L EA E I  +  + D  +W  LLGAC+ HG+    +
Sbjct: 845 NYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGK 904

Query: 539 IAAKHLSELEPESAANNMLLTDLYANA 565
            AA  L EL+P+S+++ +LL+ +YA +
Sbjct: 905 RAADKLMELKPQSSSSYVLLSSIYAES 931



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 218/435 (50%), Gaps = 7/435 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL + K++H++ +  G+     +   ++  Y +C N+  A+  F  + K ++  W ++ 
Sbjct: 55  QALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVL 114

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   G     V  F  M    ++ N F    VL AC  L D+  G ++H  V K  FG
Sbjct: 115 SMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFG 174

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             +F    LIDMY+KC  +  A+ VFD  +  D V+  A+++GYV+ G   EA+ + + +
Sbjct: 175 FRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRM 234

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                 P+ +T  T+++ +   G      KLF  +      P+VV+W  +ISG       
Sbjct: 235 QRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIP----NPNVVAWNVMISGHAKRGFA 290

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F E+   G   T +++ S+L A AS + +  G  +H  A   G++ +++V SAL
Sbjct: 291 EEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSAL 350

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
           V+MYAKC  +  A+ +F+ + ERN V WN+M+ G A +G   E +E F+ M+    + D 
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDE 410

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +FT++ +AC  +  +  G +L  +M  K K          +VD+  ++G L EA +  +
Sbjct: 411 FTFTSIFSACASLHYLNFGGQLHTVMI-KNKFASNLFVANALVDMYAKSGALKEARKQFE 469

Query: 511 TMSTEPDLFVWGALL 525
            M    D   W A++
Sbjct: 470 LMKIH-DNVSWNAII 483



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/509 (25%), Positives = 233/509 (45%), Gaps = 69/509 (13%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G ++HAQ    GL     + + L+  Y +C  +  A+ +F+ + + NI  W A+ G 
Sbjct: 325 LNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGG 384

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A+ G  QE +  F  M   G + + F   S+  AC  L  +  G ++H++++K+ F ++
Sbjct: 385 FAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASN 444

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++L+DMY+K G++++A+K F+ M   D V+ NA++ GYVQ     EA  +   + +
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504

Query: 274 PRVKPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMR 307
             V P+ V+  +++S  +     K G Q                      M  K   ++ 
Sbjct: 505 NGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLA 564

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V       +VVS  ++I+G       +EA   F+E+   G  PT  T + +L  C  
Sbjct: 565 ARDVFYSMPSRNVVSVNALIAGYTMGHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDG 623

Query: 363 AANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWN 420
           A  +  G++IHG  +  G +     V  +L+ +Y       ++ TLF ++   +  V W 
Sbjct: 624 AFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWT 683

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL------- 472
           ++I G A   + ++A++ +  M     L D  +F +VL AC  +  ++ GQ +       
Sbjct: 684 ALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHT 743

Query: 473 -FNMMQ--------------------EKYKIMPRTEH---YACMVDLLGRAGRLAEAYEM 508
            FNM +                    + ++ MPR  +   +  M+  L + G   EA E+
Sbjct: 744 GFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEI 803

Query: 509 IKTMSTE---PDLFVWGALLGACKNHGNI 534
            K M  +   PD   +  +L AC + G +
Sbjct: 804 FKQMEQQSIIPDEVTFLGVLSACSHAGRV 832



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 197/450 (43%), Gaps = 68/450 (15%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  +  +G    +     LI  Y +C+ +  AR++FD     +   W AL   Y R
Sbjct: 161 GRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVR 220

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+  EAV VF  M                +  GH                     D   
Sbjct: 221 DGFPMEAVKVFDRM----------------QRVGH-------------------APDQIT 245

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           + ++++ Y   G +  A+K+F ++   ++VA N M+SG+ +RG A EA++   E+    +
Sbjct: 246 LVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGL 305

Query: 277 KPNVVTWNTLISGF----------------SKSG--DQV--------MVSKLFQLMRAKG 310
           K    +  +++S                  +K G  D V        M +K  ++  AK 
Sbjct: 306 KATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQ 365

Query: 311 V-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V     E ++V W +++ G   N    E  + F  M   G  P   T +SI  ACAS   
Sbjct: 366 VFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHY 425

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  G ++H   I      +L V +ALVDMYAK G + EAR  F+ M   + V+WN++I G
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
                Y DEA  +F +M     L D +S  ++++AC +V  ++ GQ+   ++  K  +  
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLL-VKVGLDT 544

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            T   + ++D+  + G +  A ++  +M +
Sbjct: 545 STCAGSSLIDMYVKCGVVLAARDVFYSMPS 574



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 156/373 (41%), Gaps = 69/373 (18%)

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L  + T + IHS  LK   G    + + ++D+Y KCG+V+ A+K F  + +KD+ A N++
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG---------------------- 289
           +S Y+  GL    +     +    V+PN  T+  ++S                       
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF 173

Query: 290 ----FSKSGDQVMVSKLFQLMRAK-----GVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
               F + G   M +K   L  A+      +  D VSWT++I+G V +    EA   F  
Sbjct: 174 GFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDR 233

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M   G  P   T+ ++                                   V+ Y   G 
Sbjct: 234 MQRVGHAPDQITLVTV-----------------------------------VNAYVALGR 258

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           +++AR LF ++   N V WN MI G A  G+ +EAI  F ++++   K    S  +VL+A
Sbjct: 259 LADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSA 318

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
              + ++  G  + +    K  +       + +V++  +  ++  A ++  ++  E ++ 
Sbjct: 319 IASLSMLNYGS-MVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLG-ERNIV 376

Query: 520 VWGALLGACKNHG 532
           +W A+LG    +G
Sbjct: 377 LWNAMLGGFAQNG 389



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 46/234 (19%)

Query: 72  RSFHLSP--AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           RS ++ P  AA++  +       +LQ+G+ +H+ +  +G        + LI  Y +C ++
Sbjct: 706 RSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDV 765

Query: 130 HHARMLFDEIP-KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
             +  +F E+P + N+  W ++    A+ GY +EA+ +F +M  Q +  +      VL A
Sbjct: 766 KGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSA 825

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-----EK 243
           C H                                    G V + +KVFD MV     + 
Sbjct: 826 CSH-----------------------------------AGRVSEGRKVFDLMVNNYKLQP 850

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            +  +  MV    + G   EA   + ++G    K + + W+TL+    K GD+V
Sbjct: 851 RVDHLGCMVDILGRWGFLNEAEEFINKLGC---KADPMLWSTLLGACRKHGDEV 901


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/506 (32%), Positives = 260/506 (51%), Gaps = 35/506 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTEC---QNIHHARMLFDEIPKTNIHRWI 148
           R+L     LH  +I S + R     ++LI F T C    N+ +AR +F+ I   +++ W 
Sbjct: 17  RSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWN 76

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           ++   Y+      +A+  + EM  +G   + F  P VLKAC  L DI  G  +H  V+K 
Sbjct: 77  SMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKT 136

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
            F  + +V + L+ MY  CG V    +VF+++ + ++VA  +++SG+V     ++A+   
Sbjct: 137 GFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAF 196

Query: 269 EEIGTPRVKPN--------------------------VVTWNTLISGFSKSGDQVMVSKL 302
            E+ +  VK N                          V+   +LI  ++K GD      L
Sbjct: 197 REMQSNGVKANETIMVDLLVACGRCFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYL 256

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  M     E  +VSW S+I+G   N   +EA   F +ML  G  P   T  S++ A   
Sbjct: 257 FDGMP----ERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMI 312

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
               + G+ IH      G   D  +  ALV+MYAK G    A+  F+ + +++T+ W  +
Sbjct: 313 QGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVV 372

Query: 423 IFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           I G A+HG+ +EA+ +F +M+E+     D +++  VL AC H+GLVE GQR F  M++ +
Sbjct: 373 IIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLH 432

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            + P  EHY CMVD+L RAGR  EA  ++KTM  +P++ +WGALL  C  H N+EL +  
Sbjct: 433 GLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRI 492

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
              ++E E   +   +LL+++YA AG
Sbjct: 493 RSMVAEPEELGSGIYVLLSNIYAKAG 518


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 250/472 (52%), Gaps = 42/472 (8%)

Query: 97  GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G+I  A+++   +     ++   +IT Y +   +  A+ LFD +P  N   W  +   YA
Sbjct: 335 GRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYA 394

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G  +EA+ +   +H  G+  ++  + S   AC H+  + TG ++HSL +K     +++
Sbjct: 395 QNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSY 454

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LI MY KC ++E  ++VF+ M  KD V+ N+ ++  VQ        N++E+     
Sbjct: 455 VCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQN-------NMLED----- 502

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                                     +F  M ++    DVVSWT++IS        DEA 
Sbjct: 503 -----------------------ARHIFDNMLSR----DVVSWTTIISAYAQAERGDEAV 535

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + FK ML +   P S  ++ +L  C    + + G++IH  AI  G++ +L V +AL+ MY
Sbjct: 536 EFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMY 595

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFT 454
            KCG  +++  +FD M ER+  TWN+ I GCA HG   EAI+++  ME    L + ++F 
Sbjct: 596 FKCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFV 654

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L AC H GLV+ G + F  M   Y + P  EHYACMVDLLGR G +  A + I  M  
Sbjct: 655 GLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPI 714

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           EPD  +W ALLGACK H N E+   AA+ L   EP +A N ++L+++Y++ G
Sbjct: 715 EPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLG 766



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 228/504 (45%), Gaps = 76/504 (15%)

Query: 94  LQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +Q+G I  A+ +   + +R       ++T Y   + +  A  LF ++P+ N+  W  +  
Sbjct: 137 VQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMIS 196

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y R   H +   +F  MH +G   +     SVL A   L D+G  E +  LVLK  F +
Sbjct: 197 GYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFES 256

Query: 213 DAFVVSSLIDMYSKCGS-VEKAKKVFDEMVE----------------------------- 242
           D  + +S++++Y++  S ++ A K FD MVE                             
Sbjct: 257 DVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRD 316

Query: 243 --KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
             K I +  A+++G  + G  TEA  L E+I      P VV+WN +I+G+ ++G      
Sbjct: 317 PVKSIPSQTALLTGLARCGRITEARILFEQIP----DPIVVSWNAMITGYMQNGMVDEAK 372

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           +LF  M  +    + +SW  +I+G   N  ++EA D  + +   G  P+ ++++S   AC
Sbjct: 373 ELFDRMPFR----NTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLAC 428

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC---------------------- 398
           +    +  G+++H  A+  G + + +V +AL+ MY KC                      
Sbjct: 429 SHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWN 488

Query: 399 ---------GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKL 448
                      + +AR +FD M  R+ V+W ++I   A     DEA+E F  M  E +K 
Sbjct: 489 SFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKP 548

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           +    T +L+ C  +G  +LGQ++ + +  K+ +         ++ +  + G  A+++++
Sbjct: 549 NSPILTILLSVCGGLGSAKLGQQI-HTVAIKHGMDSELIVANALMSMYFKCG-CADSHKV 606

Query: 509 IKTMSTEPDLFVWGALLGACKNHG 532
             +M  E D+F W   +  C  HG
Sbjct: 607 FDSME-ERDIFTWNTFITGCAQHG 629



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 183/410 (44%), Gaps = 57/410 (13%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +  AR +FD +P  +I  W ++  AY   G  ++A  +F                     
Sbjct: 49  LREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF--------------------- 87

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
                D  +G  + +  +             L+  Y++ G V  A++VFD M E++ VA 
Sbjct: 88  -----DAISGGNVRTATI-------------LLSGYARLGRVLDARRVFDGMPERNTVAW 129

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           NAMVS YVQ G  T A  L + + +     +V +WN++++G+  S   V    LF+ M  
Sbjct: 130 NAMVSCYVQNGDITMARRLFDAMPS----RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQ 185

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
           +    ++V+WT +ISG V    + + +D F+ M  +G  P  +  +S+L A     ++  
Sbjct: 186 R----NLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGV 241

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAK-CGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            + +    +  G E D+ + ++++++Y +    +  A   FD M ERN  TW++MI   +
Sbjct: 242 LEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALS 301

Query: 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           + G  D AI ++ + +  K +   S TA+LT     G +   + LF  + +     P   
Sbjct: 302 HGGRIDAAIAVYGR-DPVKSIP--SQTALLTGLARCGRITEARILFEQIPD-----PIVV 353

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            +  M+    + G + EA E+   M    +   W  ++     +G  E A
Sbjct: 354 SWNAMITGYMQNGMVDEAKELFDRMPFR-NTISWAGMIAGYAQNGRSEEA 402



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 122/537 (22%), Positives = 210/537 (39%), Gaps = 119/537 (22%)

Query: 68  PIISRSFH--LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYT 124
           P+  RS H  L  +A+S RI    R      G++  A+ +   +     IA   +I+ Y 
Sbjct: 21  PLPVRSVHRALDKSAHSARIRELAR-----LGRLREAREVFDAMPHRDIIAWNSMISAYC 75

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
               +  AR+LFD I   N+     L   YAR G   +A  VF      G+ +   V  +
Sbjct: 76  NSGMLEDARILFDAISGGNVRTATILLSGYARLGRVLDARRVF-----DGMPERNTVAWN 130

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
            + +C                                  Y + G +  A+++FD M  +D
Sbjct: 131 AMVSC----------------------------------YVQNGDITMARRLFDAMPSRD 156

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           + + N+MV+GY       +A NL +++     + N+VTW  +ISG+ +         +F+
Sbjct: 157 VTSWNSMVTGYCHSRQMVDAWNLFKQMP----QRNLVTWTVMISGYVRIEQHGKGWDIFR 212

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSILPAC--- 360
           +M  +G  PD  ++ SV+S  V    +    +  + + L  GF       +SIL      
Sbjct: 213 MMHHEGASPDQSNFASVLSA-VTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRD 271

Query: 361 ASA-----------------------ANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMY 395
           ASA                       A +  G  I     V G +    +  ++AL+   
Sbjct: 272 ASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGL 331

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455
           A+CG I+EAR LF+++ +   V+WN+MI G   +G  DEA ELF++M  R  +      A
Sbjct: 332 ARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIA 391

Query: 456 --------------------------------VLTACCHVGLVELGQRLFNMMQEKYKIM 483
                                              AC H+G +E G+++ ++     K  
Sbjct: 392 GYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSL---AVKAG 448

Query: 484 PRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            +   Y C  ++ + G+   +    ++   M  + D   W + + A   +  +E A 
Sbjct: 449 CQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIAALVQNNMLEDAR 504



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
           G++   + L+  YA+ G + +AR +FD M ERNTV WN+M+     +G    A  LF+ M
Sbjct: 93  GNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAM 152

Query: 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
             R   D  S+ +++T  CH   +     LF  M ++  +      +  M+    R  + 
Sbjct: 153 PSR---DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVT-----WTVMISGYVRIEQH 204

Query: 503 AEAYEMIKTMSTE---PDLFVWGALLGACKNHGNIELAEI 539
            + +++ + M  E   PD   + ++L A     ++ + E+
Sbjct: 205 GKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEV 244



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 111/251 (44%), Gaps = 11/251 (4%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H   I  G+     +A  L++ Y +C     +  +FD + + +I  W       A+
Sbjct: 569 GQQIHTVAIKHGMDSELIVANALMSMYFKC-GCADSHKVFDSMEERDIFTWNTFITGCAQ 627

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  +EA+ ++  M   G+  N      +L AC H   +  G +     +   +G    +
Sbjct: 628 HGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFK-SMSRDYGLTPLL 686

Query: 217 --VSSLIDMYSKCGSVEKAKK-VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
              + ++D+  + G V+ A+K ++D  +E D V  +A++        A       E++ T
Sbjct: 687 EHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFT 746

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVISGLVHNFCN 331
                N   +  L + +S  G  V V++L ++M+ +GV  EP   SW   I   VH+F  
Sbjct: 747 TE-PSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPG-CSWMQ-IRNKVHSFVT 803

Query: 332 -DEAFDTFKEM 341
            D+  +  +E+
Sbjct: 804 GDKQHEKIEEI 814


>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
          Length = 1165

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 245/440 (55%), Gaps = 9/440 (2%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           ++  AR +FD +P+ N+  W ++   Y +RG  ++ + +F  M  +G++ N   +   L 
Sbjct: 210 SVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALD 269

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC   S    G +IH+L++   F  D F+  S+I MYS+ G +  AK+ FD M +KDIV+
Sbjct: 270 ACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVS 329

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            N++++GYVQ  +  EA  L + +     + + V+W +++ GF+  G      +LF+ M 
Sbjct: 330 WNSLITGYVQHDMVEEAHVLFKLMH----QKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            K    D V+WT++IS  + N     A   F  M  +G  P +   S +L A AS A + 
Sbjct: 386 VK----DEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLN 441

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +G++ H  +I MG   D  V ++LV MYAKCG ++EA  +F  +S  + +  NSMI    
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFV 501

Query: 428 NHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG+ ++A++LF +M+    K +H++F  +LT C   G V+ G   F  M+  Y + P  
Sbjct: 502 QHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           EHY CMVDLLGRAG LAEA EMI +M        W ALL A   H N+  A+IAA+ L E
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLE 621

Query: 547 LEPESAANNMLLTDLYANAG 566
            +P  A    +L+ ++++AG
Sbjct: 622 KDPYDATAYTVLSRMFSSAG 641



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 217/488 (44%), Gaps = 91/488 (18%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+T Y     +  A++LFD++P  ++  W AL  AYA  G    A  VF +M  +     
Sbjct: 44  LLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPSW 103

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             ++   L+A    +      K+ +         +A    ++I   +K   + +A+ V++
Sbjct: 104 NALLSVYLRAARPRAAHALFYKMPA--------KNAVSYGAIISGLAKAEMLHEAELVYE 155

Query: 239 EMV--EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           EM    +D V  NA+++GY++ G    AL + E + T R   +V++W+ ++ G  K G  
Sbjct: 156 EMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGM-TVR---DVISWSAMVDGLCKHGSV 211

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               ++F  M     E +VVSWTS+I G V      +    F  M  +G    + T+S  
Sbjct: 212 SEARRVFDAM----PERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVA 267

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+A+  R G +IH   I MG E D+ +  +++ MY++ G++ +A+  FD M +++ 
Sbjct: 268 LDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDI 327

Query: 417 VTWN-------------------------------SMIFGCANHGYCDEAIELFNQMEER 445
           V+WN                               SM+ G AN G+  E++ELF QM  +
Sbjct: 328 VSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVK 387

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYAC------------- 491
              D +++TA++++    G      R F  M QE  K  P T  ++C             
Sbjct: 388 ---DEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCK--PNTIAFSCLLSALASLAMLNQ 442

Query: 492 ----------------------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
                                 +V +  + GRLAEAY +  ++S  P L    +++ A  
Sbjct: 443 GRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFV 501

Query: 530 NHGNIELA 537
            HG +E A
Sbjct: 502 QHGFVEDA 509



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 151/331 (45%), Gaps = 25/331 (7%)

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L+  Y + G +  A+ +FD+M  +D+++  A+++ Y   G    A  + +++  PR 
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDM--PRR 98

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             N  +WN L+S + ++        LF  M AK    + VS+ ++ISGL       EA  
Sbjct: 99  --NAPSWNALLSVYLRAARPRAAHALFYKMPAK----NAVSYGAIISGLAKAEMLHEAEL 152

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMY 395
            ++EM  Q   P  +           A  +R G+      +  G+   D+   SA+VD  
Sbjct: 153 VYEEMPWQWRDPVGSN-------ALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGL 205

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFT 454
            K G +SEAR +FD M ERN V+W SMI G    G C + + LF N   E  +++  + +
Sbjct: 206 CKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLS 265

Query: 455 AVLTACCHVGLVELGQRLFNM---MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
             L AC    L   G ++ N+   M  +  I         ++ +  R G + +A      
Sbjct: 266 VALDACAAASLAREGIQIHNLIISMGFELDIFLGDS----IIIMYSRFGWMVDAKRAFDC 321

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           M  + D+  W +L+     H  +E A +  K
Sbjct: 322 MQ-QKDIVSWNSLITGYVQHDMVEEAHVLFK 351


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 167/517 (32%), Positives = 268/517 (51%), Gaps = 61/517 (11%)

Query: 59  IFIEAHYKMPIISRS---FHLSP----AAYSERIEIYIRDRALQSGKILHAQLIVSGLAR 111
           + I +H    ++S +   F L+P     +++  +  Y+R+     G++  A+ + +    
Sbjct: 136 VMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN-----GRVEEARGLFNSRTE 190

Query: 112 LTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
              I+   L++ Y +   +  AR LFD +P  ++  W  +   YARRG   EA  +F   
Sbjct: 191 WDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAA 250

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
            ++                                       D F  ++++  Y++ G +
Sbjct: 251 PVR---------------------------------------DVFTWTAVVSGYAQNGML 271

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           E+A++VFD M E++ V+ NAMV+ Y+QR +  EA  L   +       NV +WNT+++G+
Sbjct: 272 EEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGY 327

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +++G       +F  M  K    D VSW ++++      C++E    F EM   G     
Sbjct: 328 AQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +  + +L  CA  A +  G ++HG  I  G      V +AL+ MY KCG + +AR  F++
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELG 469
           M ER+ V+WN+MI G A HG+  EA+E+F+ M     K D ++   VL AC H GLVE G
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
              F  M   + +  + EHY CM+DLLGRAGRLAEA++++K M  EPD  +WGALLGA +
Sbjct: 504 ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASR 563

Query: 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            H N EL   AA+ + ELEPE+A   +LL+++YA++G
Sbjct: 564 IHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSG 600



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 215/489 (43%), Gaps = 83/489 (16%)

Query: 94  LQSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G++  A+ + + + R  T     ++  Y+    +  A  LF  IP+ + + +  L  
Sbjct: 49  MRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLH 108

Query: 153 AYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV--LKHS 209
           A A      +A  +F EM ++  +  N+ +               +    H LV   +H 
Sbjct: 109 ALAVSSSLADARGLFDEMPVRDSVTYNVMI---------------SSHANHGLVSLARHY 153

Query: 210 FG----TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           F      DA   + ++  Y + G VE+A+ +F+   E D+++ NA++SGYVQ G  +EA 
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAR 213

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
            L + +       +VV+WN ++SG+++ GD V   +LF     +    DV +WT+V+SG 
Sbjct: 214 ELFDRM----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGY 265

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
             N   +EA   F  M  +     +A +++ +        M   KE+        V    
Sbjct: 266 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYI----QRRMMDEAKELFNMMPCRNVAS-- 319

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
              + ++  YA+ G + EA+ +FD M +++ V+W +M+   +  G  +E ++LF +M   
Sbjct: 320 --WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRL-------------------------------- 472
            + ++  +F  VL+ C  +  +E G +L                                
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 473 ---FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLG 526
              F  M+E+  +      +  M+    R G   EA   ++M++T ST+PD      +L 
Sbjct: 438 RNAFEEMEERDVV-----SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 527 ACKNHGNIE 535
           AC + G +E
Sbjct: 493 ACSHSGLVE 501



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 20/363 (5%)

Query: 57  NGIFIEAHYKMPIISRSFHLSP----AAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           NG+  EA        R F   P     +++  +  YI+ R +   K L   +    +A  
Sbjct: 268 NGMLEEAR-------RVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
                 ++T Y +   +  A+ +FD +P+ +   W A+  AY++ G  +E + +F EM  
Sbjct: 321 NT----MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 376

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            G   N      VL  C  ++ +  G ++H  +++  +G   FV ++L+ MY KCG++E 
Sbjct: 377 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMED 436

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A+  F+EM E+D+V+ N M++GY + G   EAL + + + T   KP+ +T   +++  S 
Sbjct: 437 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 496

Query: 293 SG-DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           SG  +  +S  + +    GV      +T +I  L       EA D  K+M    F P S 
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM---PFEPDST 553

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
              ++L A     N   G+        +  E +  +   L ++YA  G   +AR +   M
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMM 612

Query: 412 SER 414
            ER
Sbjct: 613 EER 615



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 134/339 (39%), Gaps = 90/339 (26%)

Query: 275 RVKPNVV-------------------------------TWNTLISGFSKSGDQVMVSKLF 303
           R++P V+                               T+N +++G+S +G   + + LF
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS-------- 355
           + +      PD  S+ +++  L  +    +A   F EM  +     +  ISS        
Sbjct: 93  RAI----PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVS 148

Query: 356 -------ILPACAS-------AANMRRGK--EIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
                  + P   +       AA +R G+  E  G       E D+   +AL+  Y + G
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL-FNSRTEWDVISWNALMSGYVQWG 207

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459
            +SEAR LFD+M  R+ V+WN M+ G A  G   EA  LF+    R   D  ++TAV++ 
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR---DVFTWTAVVSG 264

Query: 460 CCHVGLVELGQRLFNMMQEK------------------------YKIMP--RTEHYACMV 493
               G++E  +R+F+ M E+                        + +MP      +  M+
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
               +AG L EA  +  TM  + D   W A+L A    G
Sbjct: 325 TGYAQAGMLEEAKAVFDTM-PQKDAVSWAAMLAAYSQGG 362



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 34/169 (20%)

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-------------- 442
           + G +++A  LF  M  R+T T+N+M+ G + +G    A  LF  +              
Sbjct: 50  RAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHA 109

Query: 443 --------------EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
                         +E    D +++  ++++  + GLV L +  F++  EK  +      
Sbjct: 110 LAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV-----S 164

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +  M+    R GR+ EA  +  +  TE D+  W AL+      G +  A
Sbjct: 165 WNGMLAAYVRNGRVEEARGLFNS-RTEWDVISWNALMSGYVQWGKMSEA 212


>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 520

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/516 (31%), Positives = 275/516 (53%), Gaps = 49/516 (9%)

Query: 59  IFIEAHYK-MPIISRSFHLSPAAY-SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA 116
           IF   HY   P+      LSPA Y +  ++ +I   A ++G+ +HA +I +G      I+
Sbjct: 13  IFPLNHYSTFPLKQNVSSLSPAKYIAGALQEHINSSAPKAGQKIHADIIKTGFIPDLNIS 72

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
            KL+  + +C  + +AR +FDE+PK  +  +  +   Y + G+ +E + +   +   G K
Sbjct: 73  IKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGFLKELLLLVQWISYSGEK 132

Query: 177 QNIFVIPSVLKACGHLSDIGTGEK-----IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
            + + +  VLKA   L       +     +H+ ++K     D  ++++L+D Y K G +E
Sbjct: 133 ADGYTLSMVLKASNSLGSNMLMPRSLCRLVHARIIKCDVELDDVLITALVDAYVKSGKLE 192

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-GTPRVKPNVVTWNTLISGF 290
            A+ VF+ M ++++V   +M+SGY+ +G   +A    EEI  T +VK ++V +N ++ GF
Sbjct: 193 SARTVFETMKDENVVCCTSMISGYMNQGFVEDA----EEIFNTTKVK-DIVVYNAMVEGF 247

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           S+S +                                      + D +  M    F P  
Sbjct: 248 SRSAETA----------------------------------KRSVDMYISMQRASFHPNI 273

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +T +S++ AC+       G+++H   +  GV   + + S+L+DMYAKCG I +AR +FD+
Sbjct: 274 STFASVIGACSVLTCHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIDDARRVFDQ 333

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELG 469
           M E+N  +W SMI G   +G  +EA+ELF +M+E   + ++++F  VL+AC H GLV+ G
Sbjct: 334 MQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNYVTFLGVLSACSHSGLVDKG 393

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             +F  MQ  Y + P+ EHYACMVDL+GRAG L +A+E ++ M    +  VW ALL +C 
Sbjct: 394 YEIFESMQRDYSMKPKMEHYACMVDLMGRAGELNKAFEFVRAMPERHNSDVWAALLSSCN 453

Query: 530 NHGNIELAEIAAKHLSELEPESAANNML-LTDLYAN 564
            HGN++LA IAA  L +L  +      L L+++YA+
Sbjct: 454 LHGNVDLASIAASELFKLNADKRPGAYLALSNVYAS 489


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 175/539 (32%), Positives = 266/539 (49%), Gaps = 77/539 (14%)

Query: 101 HAQLIVSGLARLTQIATKLITF---YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           HAQ++ +GL       +KL+           + +A  +F+   + N+  W  +    A  
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
                 + ++  M   G   N +  P +LK+C        G +IH+ V+K     D +  
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121

Query: 218 SSLIDMYSKCGSVE-------------------------------KAKKVFDEMVEKDIV 246
           +SLI MY++ G +E                                A+KVFD + E+D+V
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVV 181

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------------------- 283
           + NAM++GYV+     EAL L +E+    V+P+  T                        
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLV 241

Query: 284 -------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                        N  I  +SK GD  + S LF+ +  K    DVVSW ++I G  H   
Sbjct: 242 DDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCK----DVVSWNTLIGGYTHMNL 297

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMGVEGDLHVR 388
             EA   F+EML  G  P   T+ S+LPACA    +  G+ IH      + GV     +R
Sbjct: 298 YKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALR 357

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
           ++L+DMYAKCG I  A  +F+ M  ++  +WN+MIFG A HG  + A +LF++M +   +
Sbjct: 358 TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIE 417

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            D ++   +L+AC H GL++LG+ +F  + + Y I P+ EHY CM+DLLG AG   EA E
Sbjct: 418 PDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEE 477

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +I  M  EPD  +W +LL ACK HGN+ELAE  A+ L E+EPE++ + +LL+++YA AG
Sbjct: 478 IIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAG 536



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 181/431 (41%), Gaps = 57/431 (13%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+KS     K    G  I A     ++     L   A++  I +Y R+  L+  + 
Sbjct: 89  LLKSCAKS-----KTFEEGRQIHAQ----VMKLGCELDRYAHTSLISMYARNGRLEDAR- 138

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
              ++      R     T LIT Y    ++  AR +FD I + ++  W A+   Y     
Sbjct: 139 ---KVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCG 195

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVS 218
           ++EA+ +F EM    ++ +   + SVL AC     I  G +IH+LV   H FG+   +V+
Sbjct: 196 YEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVN 255

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           + I +YSKCG VE A  +F+ +  KD+V+ N ++ GY    L  EAL L +E+      P
Sbjct: 256 AFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 315

Query: 279 NVVT------------------W-------------------NTLISGFSKSGDQVMVSK 301
           N VT                  W                    +LI  ++K GD     +
Sbjct: 316 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQ 375

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M  K +     SW ++I G   +   + AFD F  M   G  P   T+  +L AC+
Sbjct: 376 VFNSMMHKSLS----SWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACS 431

Query: 362 SAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTW 419
            +  +  G+ I         +   L     ++D+    G   EA  +   M  E + V W
Sbjct: 432 HSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIW 491

Query: 420 NSMIFGCANHG 430
            S++  C  HG
Sbjct: 492 CSLLKACKMHG 502


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 174/541 (32%), Positives = 267/541 (49%), Gaps = 59/541 (10%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           S  +Y+  I  Y+R+      + L  Q+    L         ++T Y     +  AR LF
Sbjct: 79  SSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNV----MLTGYVRNCRLGDARRLF 134

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM------HIQGLKQNIFVIPSVLKACG 190
           D +P+ ++  W +L   YA+ GY  EA  VF  M         GL         + +AC 
Sbjct: 135 DLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACL 194

Query: 191 HLSDIGTGEKIH------SLVLKHSFGT-----------DAFVVSSLIDMYSKCGSVEKA 233
                   + I         V K   G            DA   +++I  Y++ G + +A
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-------------GTPRVKP-- 278
           +++FDE   +D+    AMVSGYVQ G+  EA    +E+             G  + K   
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 279 ------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                       N+ +WNT+I+G+ + GD     K F +M  +    D VSW ++I+G  
Sbjct: 315 IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR----DCVSWAAIIAGYA 370

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
            +   +EA + F E+   G     AT    L  CA  A +  GK+IHG A+ MG      
Sbjct: 371 QSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCF 430

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           V +AL+ MY KCG I EA   F+ + E++ V+WN+M+ G A HG+  +A+ +F  M+   
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAG 490

Query: 447 -KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            K D ++   VL+AC H GL++ G   F  M + Y ++P ++HY CM+DLLGRAGRL EA
Sbjct: 491 VKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEA 550

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            ++I+ M  +P    WGALLGA + HGN EL E AA+ + ++EP+++   +LL++LYA +
Sbjct: 551 QDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAAS 610

Query: 566 G 566
           G
Sbjct: 611 G 611



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 11/336 (3%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           +Y+  I  Y++ + +   +    +L  S   R       +IT Y +  +I  AR  FD +
Sbjct: 299 SYNAMIAGYVQTKKMDIAR----ELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMM 354

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P+ +   W A+   YA+ G+++EA+ +F E+   G   N       L  C  ++ +  G+
Sbjct: 355 PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGK 414

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH   +K  +GT  FV ++L+ MY KCGS+++A   F+ + EKD+V+ N M++GY + G
Sbjct: 415 QIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHG 474

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSW 318
              +AL + E + T  VKP+ +T   ++S  S +G     ++ F  M +  GV P    +
Sbjct: 475 FGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHY 534

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           T +I  L      +EA D  + M    F P +A+  ++L A     N   G++       
Sbjct: 535 TCMIDLLGRAGRLEEAQDLIRNM---PFQPGAASWGALLGASRIHGNTELGEKAAEMVFK 591

Query: 379 MGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSE 413
           M  +   ++V   L ++YA  G   +A  +  KM +
Sbjct: 592 MEPQNSGMYV--LLSNLYAASGRWVDADKMRSKMRD 625



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 195/428 (45%), Gaps = 54/428 (12%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +F+ +P+ +   + A+   Y R      A  +F +M  + L     ++   ++ C     
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC----R 126

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +G   ++  L+ +     D    +SL+  Y++ G V++A++VFD M EK+ ++ N +++ 
Sbjct: 127 LGDARRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182

Query: 255 YVQRGLATEALNLVE---------------------EIGTPRV----KP--NVVTWNTLI 287
           YV  G   EA  L E                     ++G  R      P  + ++WNT+I
Sbjct: 183 YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMI 242

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           SG+++ G      +LF     +    DV +WT+++SG V N   DEA   F EM  +   
Sbjct: 243 SGYAQGGGLSQARRLFDESPTR----DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV 298

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             +A I+  +        M   +E+        +       + ++  Y + G I++AR  
Sbjct: 299 SYNAMIAGYV----QTKKMDIARELFESMPCRNISS----WNTMITGYGQIGDIAQARKF 350

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLV 466
           FD M +R+ V+W ++I G A  G+ +EA+ +F ++ ++ + L+  +F   L+ C  +  +
Sbjct: 351 FDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAAL 410

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           ELG+++     +  K+   T  +    ++ +  + G + EA +  + +  E D+  W  +
Sbjct: 411 ELGKQIHG---QAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTM 466

Query: 525 LGACKNHG 532
           L     HG
Sbjct: 467 LAGYARHG 474



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 198/481 (41%), Gaps = 59/481 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H Q +  G      +   L+  Y +C +I  A   F+ I + ++  W  +  
Sbjct: 409 ALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLA 468

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LSDIGTGEKIHSLVLKHSF 210
            YAR G+ ++A+TVF  M   G+K +   +  VL AC H  L D GT E  +S+   +  
Sbjct: 469 GYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGT-EYFYSMTKDYGV 527

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
              +   + +ID+  + G +E+A+ +   M  +   A    + G  +    TE      E
Sbjct: 528 IPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAE 587

Query: 271 IGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEP-DVVSWTSVISGLVHN 328
           +   +++P       L+S  ++ SG  V   K+   MR  GV+     SW  V    +H 
Sbjct: 588 M-VFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEV-QNKIHT 645

Query: 329 FCNDEAFDTFKE------------MLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
           F   +     KE            M  +G+   +  +   +        ++   E    A
Sbjct: 646 FSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVA 705

Query: 377 I-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC--- 432
             ++ + G   +R  ++     C     A     K+  R  +  +S  F   N G+C   
Sbjct: 706 FGILTIPGGRPIR--VMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCG 763

Query: 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           D  ++ F                 L    + GL++ G   F  M E+Y + P ++HY CM
Sbjct: 764 DYWLQFF-----------------LLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCM 806

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           +DLLGR  RL E                 GALLGA + HGN EL E AA+   ++ P+++
Sbjct: 807 IDLLGRVDRLEE-----------------GALLGASRIHGNTELGEKAAQMFFKMGPQNS 849

Query: 553 A 553
            
Sbjct: 850 G 850



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 159/352 (45%), Gaps = 48/352 (13%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    +  I  + + G  + A  VF+ M  +  V+ NAM+SGY++      A NL +++ 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM- 106

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + ++ +WN +++G+ ++       +LF LM     E DVVSW S++SG   N   D
Sbjct: 107 ---PERDLFSWNVMLTGYVRNCRLGDARRLFDLM----PEKDVVSWNSLLSGYAQNGYVD 159

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSAL 391
           EA + F  M  +     S + + +L     AA +  G+    C +     + DL   + L
Sbjct: 160 EAREVFDNMPEK----NSISWNGLL-----AAYVHNGRIEEACLLFESKSDWDLISWNCL 210

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451
           +  + +   + +AR LFDKM  R+ ++WN+MI G A  G   +A  LF++   R   D  
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR---DVF 267

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKI------------------------MP--R 485
           ++TA+++     G+++  +  F+ M EK ++                        MP   
Sbjct: 268 TWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRN 327

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
              +  M+   G+ G +A+A +    M  + D   W A++      G+ E A
Sbjct: 328 ISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEA 378



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 17/226 (7%)

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           +PD++ W   IS  + N   D A   F  M  +     +A IS  L    S  N+ R   
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRN--SKFNLARN-- 101

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
                     E DL   + ++  Y +   + +AR LFD M E++ V+WNS++ G A +GY
Sbjct: 102 ----LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157

Query: 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            DEA E+F+ M E+   + +S+  +L A  H G +E    LF    +   I      + C
Sbjct: 158 VDEAREVFDNMPEK---NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI-----SWNC 209

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++    R  +L +A  +   M    D   W  ++      G +  A
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQGGGLSQA 254



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           ++ + + + WN  I     +G+CD A+ +FN M  R     +S+ A+++         L 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSS---VSYNAMISGY-------LR 92

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLG--RAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
              FN+ +  +  MP  + ++  V L G  R  RL +A  +   M  E D+  W +LL  
Sbjct: 93  NSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP-EKDVVSWNSLLSG 151

Query: 528 CKNHGNIELAEIAAKHLSE 546
              +G ++ A     ++ E
Sbjct: 152 YAQNGYVDEAREVFDNMPE 170


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/491 (33%), Positives = 266/491 (54%), Gaps = 44/491 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +AT LI  Y E   +  AR LFDE+P+ ++  W A+   YA   Y+  A   FHEM  QG
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQG 106

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG-SVEKA 233
              N F + SVLK+C ++  +  G  +H +V+K       +V ++L++MY+ C  ++E A
Sbjct: 107 RSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAA 166

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRG-------------------------LATEALNLV 268
             +F ++  K+ V    +++G+   G                         +A  A   +
Sbjct: 167 FLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASI 226

Query: 269 EEIGTPR----------VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
           + + T +           + N+   N+++  + + G      + F  M  K    D+++W
Sbjct: 227 DSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDK----DLITW 282

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
            ++IS L  +  + EA   F+   SQGF P   T +S++ ACA+ A +  G+++HG    
Sbjct: 283 NTLISELERS-DSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYR 341

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIE 437
            G   ++ + +AL+DMYAKCG I ++  +F ++ ER N V+W SM+ G  +HGY  EA+E
Sbjct: 342 RGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVE 401

Query: 438 LFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF++M     + D + F AVL+AC H GLVE G + FN+M+ +Y I P  + Y C+VDLL
Sbjct: 402 LFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLL 461

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL-AEIAAKHLSELEPESAANN 555
           GRAG++ EAYE+++ M  +PD   WGA+LGACK H +  L + +AAK + EL+P      
Sbjct: 462 GRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMELKPRMVGTY 521

Query: 556 MLLTDLYANAG 566
           ++L+ +YA  G
Sbjct: 522 VMLSYIYAAEG 532



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 136/272 (50%), Gaps = 6/272 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ++ +GK +HA ++  G      +   ++ FY  C  +  A+  F E+   ++  W  L  
Sbjct: 228 SVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLIS 287

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              R     EA+ +F     QG   N +   S++ AC +++ +  G+++H  + +  F  
Sbjct: 288 ELERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFNK 346

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +  + ++LIDMY+KCG +  +++VF E+ E +++V+  +M+ GY   G   EA+ L +++
Sbjct: 347 NVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKM 406

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
            +  ++P+ + +  ++S    +G      K F +M ++ G+ PD   +  V+  L     
Sbjct: 407 VSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGK 466

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
             EA++  + M    F P  +T  +IL AC +
Sbjct: 467 IGEAYELVERM---PFKPDESTWGAILGACKA 495


>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
 gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/473 (34%), Positives = 254/473 (53%), Gaps = 6/473 (1%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K + A +  + L   T   ++++ F   ++  +I+HA +LF ++   N + W  +   Y+
Sbjct: 67  KQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMIRGYS 126

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +    Q     F +M  +G++ +       LKAC     +  G+ +H +V K  F     
Sbjct: 127 KAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHCVVWKMGFVYTLL 186

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-IGTP 274
           V + L+  Y   G +  A+ VFDE+ E+D+V+  +M+ GY +     EAL L +  +   
Sbjct: 187 VQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYG 246

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
            V+PN VT   ++S  S+ GD ++     + ++ + V   +    +++   V   C D A
Sbjct: 247 VVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSA 306

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVD 393
            + F  M    F P   T++ +LP C     +  G+ IH   + M   E  + + +AL+D
Sbjct: 307 REIFDTM-GAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALID 365

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
           MYAKCG I EA  +F+ M ERN V+WNSMI   A+HG+  +A+ +F +M     K D ++
Sbjct: 366 MYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDIT 425

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
              VL+AC H GLV  GQ  F  M+ KY I P+ EHYACM+DLLGR G L +AYE+I  M
Sbjct: 426 LVGVLSACSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKM 485

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             EP    WGAL+ AC+ HGN+E+A+IAA  L EL+PE +   +LL ++ A+ 
Sbjct: 486 PMEPSAAAWGALVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANICASG 538


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 269/509 (52%), Gaps = 43/509 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL++G+ +H+  + +G A    I + LI  Y+ C ++  A+ +FD +   ++  + +L  
Sbjct: 129 ALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLIS 188

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A+ R G  + A     +M  QGLK N   + ++L AC  +     G++IH  ++K     
Sbjct: 189 AFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLR 244

Query: 213 DAFVVSS--LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
              V SS  LID YS+ G  + AK VFD +  K++V+  +M+  Y++ G   EAL +  +
Sbjct: 245 SQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGD 304

Query: 271 IGTPRVKPN--------------------------------VVTWNTLISGFSKSGDQVM 298
           + +  V PN                                +   N L+S + ++G   +
Sbjct: 305 MISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTG---L 361

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           V +L + M  K   PD+VSWT+ IS    N   ++A     +M S+GF P     SS+L 
Sbjct: 362 VEEL-EAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLS 420

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           +CA  A++ +G + H  A+ +G + ++   +AL++MY+KCG +  AR  FD M   +  +
Sbjct: 421 SCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTS 480

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I G A HG  ++A+E+F++M     K D  +F  VL  C H G+VE G+  F +M 
Sbjct: 481 WNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMI 540

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++Y   P   HYACM+D+LGR GR  EA  MI  M  EPD  +W  LL +CK H N+++ 
Sbjct: 541 DQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIG 600

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++AA  L EL    +A+ +L++++YA  G
Sbjct: 601 KLAADRLMELSDRDSASYVLMSNIYAMHG 629



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 222/454 (48%), Gaps = 45/454 (9%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           LFD +P+ N+  W ++   Y R G  + A+ +F +M   G+  N F   + L AC  L  
Sbjct: 70  LFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGA 129

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  GE++HSL ++  F  DA++ S LI+MYS+CGS+  AK+VFD M   D+V   +++S 
Sbjct: 130 LRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISA 189

Query: 255 YVQRG---LATEALNLVEEIG--------------TPRV----------------KPNVV 281
           + + G   LA EAL  + + G               PRV                  +V 
Sbjct: 190 FCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVY 249

Query: 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
           +   LI  +S++G+  +   +F  +  K    +VVSW S++   + +   +EA   F +M
Sbjct: 250 SSTALIDFYSRNGEFKLAKAVFDSLHCK----NVVSWCSMMQLYIRDGRLEEALQVFGDM 305

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
           +S+G  P    +S +L AC S   +  G+++H  AI   +  D+ V +AL+ MY + G +
Sbjct: 306 ISEGVDPNEFALSIVLGACGS---IGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLV 362

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTAC 460
            E   + +K+   + V+W + I     +G+ ++AI L  QM  E    +  +F++VL++C
Sbjct: 363 EELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 422

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
             V  ++ G + F+ +  K            ++++  + G++  A      M T  D+  
Sbjct: 423 ADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTH-DVTS 480

Query: 521 WGALLGACKNHGNIELA-EIAAKHLSE-LEPESA 552
           W +L+     HG+   A E+ +K  S  ++P+ +
Sbjct: 481 WNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDS 514



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 43/341 (12%)

Query: 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT 285
           K G +  A  +FD M  K++VA  +++SGY + G    AL +  ++    V PN    N 
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 286 LIS-----GFSKSGDQV---------------------MVSKLFQLMRAKGV-----EPD 314
            +      G  ++G+QV                     M S+   L  AK V      PD
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           VV +TS+IS    N   + A +   +ML QG  P   T+++IL AC        G++IHG
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHG 235

Query: 375 CAI-VMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
             I  +G+    ++  +AL+D Y++ G    A+ +FD +  +N V+W SM+      G  
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 295

Query: 433 DEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           +EA+++F  M  E    +  + + VL AC  +GL     R  +    K+ ++        
Sbjct: 296 EEALQVFGDMISEGVDPNEFALSIVLGACGSIGL----GRQLHCSAIKHDLITDIRVSNA 351

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           ++ + GR G + E   M+  +   PDL  W   + A   +G
Sbjct: 352 LLSMYGRTGLVEELEAMLNKIEN-PDLVSWTTAISANFQNG 391



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 11/243 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G   H   +  G          LI  Y++C  +  AR+ FD +   ++  W +L  
Sbjct: 427 SLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIH 486

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-KHSFG 211
            +A+ G   +A+ VF +M   G+K +      VL  C H   +  GE    L++ ++SF 
Sbjct: 487 GHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFT 546

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKD-IVAMNAMVSGYVQRGL--ATEALNL 267
                 + +IDM  + G  ++A ++ ++M  E D ++    + S  + R L     A + 
Sbjct: 547 PAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADR 606

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLV 326
           + E+        V+  N     ++  G+     K+ + M   GV+ D   SW   I+  V
Sbjct: 607 LMELSDRDSASYVLMSNI----YAMHGEWEDARKVRRRMDETGVKKDAGCSWIE-INNEV 661

Query: 327 HNF 329
           H F
Sbjct: 662 HTF 664



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTA 455
           K G +++A  LFD+M  +N V W S++ G   +G  + A+ +F  M E     +  +  A
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
            L AC  +G +  G+++ + +  +          +C++++  R G L  A E+   M + 
Sbjct: 120 ALVACADLGALRAGEQVHS-LAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDS- 177

Query: 516 PDLFVWGALLGACKNHGNIELA 537
           PD+  + +L+ A   +G  ELA
Sbjct: 178 PDVVGYTSLISAFCRNGEFELA 199


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 171/506 (33%), Positives = 269/506 (53%), Gaps = 42/506 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HAQ +  G      +   L+  Y +C  +  AR++F  +   ++  W  L      
Sbjct: 224 GRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVL 283

Query: 157 RGYHQEAVTVFHEMH--IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            G+  EA+ +FH+    I  L Q+ +   +V+K C ++  +G   ++HS VLK  F +  
Sbjct: 284 NGHDLEALQLFHDSRSSITMLTQSTYA--TVIKLCANIKQLGLARQLHSSVLKRGFHSYG 341

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            V+++L+D YSK G +  A  +F  M   +++V+  AM++G +Q G    A  L   +  
Sbjct: 342 NVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE 401

Query: 274 PRVKPNVVTWNT-------------------------------LISGFSKSGDQVMVSKL 302
             V PN  T++T                               L++ +SK  +      +
Sbjct: 402 DGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSI 461

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+++  K    DVVSW+++++       +D A + F +M   G  P   TISS++ ACAS
Sbjct: 462 FKMIDQK----DVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACAS 517

Query: 363 -AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
             A +  G++ H  +I       L V SALV MYA+ G I  A+ +F++ ++R+ V+WNS
Sbjct: 518 PTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNS 577

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+ G A HGY  +A+++F QME E  ++D ++F +V+  C H GLVE GQR F+ M   Y
Sbjct: 578 MLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDY 637

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I P  EHYACMVDL  RAG+L EA  +I+ MS      VW  LLGACK H N+EL ++A
Sbjct: 638 GITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLA 697

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A+ L  LEP  +A  +LL+++Y+ AG
Sbjct: 698 AEKLLSLEPFDSATYVLLSNIYSAAG 723



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 219/484 (45%), Gaps = 53/484 (10%)

Query: 89  IRDRALQSGKILHAQLIVSGLAR-LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           + DR L  GK LH   I  G  R    + T L+  Y +  ++   R +F+ +PK N+  W
Sbjct: 116 VPDRVL--GKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTW 173

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            +L   Y + G   + + +F  M  +G+  N     SVL        +  G ++H+  +K
Sbjct: 174 TSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK 233

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
               +  FV +SL++MY+KCG VE+A+ VF  M  +D+V+ N +++G V  G   EAL L
Sbjct: 234 FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQL 293

Query: 268 -------------------------VEEIGTPR------------VKPNVVTWNTLISGF 290
                                    ++++G  R               NV+T   L+  +
Sbjct: 294 FHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMT--ALMDAY 351

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           SK+G       +F LM       +VVSWT++I+G + N     A   F  M   G  P  
Sbjct: 352 SKAGQLGNALDIFLLMSG---SQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPND 408

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
            T S+IL   AS A++    +IH   I    E    V +AL+  Y+K     EA ++F  
Sbjct: 409 FTYSTILT--ASVASLP--PQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKM 464

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCH-VGLVEL 468
           + +++ V+W++M+   A  G  D A  +F +M     K +  + ++V+ AC      V+L
Sbjct: 465 IDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDL 524

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G R F+ +  K++        + +V +  R G + E+ + I    T+ DL  W ++L   
Sbjct: 525 G-RQFHAISIKHRCHDALCVSSALVSMYARKGSI-ESAQCIFERQTDRDLVSWNSMLSGY 582

Query: 529 KNHG 532
             HG
Sbjct: 583 AQHG 586



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 178/364 (48%), Gaps = 39/364 (10%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACG 190
           AR  FDEIP  N          +ARRG   +A+  F ++H   G +     +  VLK CG
Sbjct: 57  ARQAFDEIPHRNTLDHALFD--HARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 191 HLSDIGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
            + D   G+++H L ++  H  G D  V +SL+DMY K  SV   +KVF+ M ++++V  
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRG-DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTW 173

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG-------------- 294
            ++++GY+Q G  ++ + L   +    V PN VT+ +++S  +  G              
Sbjct: 174 TSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK 233

Query: 295 ----DQVMVSKLFQLMRAK------------GVEP-DVVSWTSVISGLVHNFCNDEAFDT 337
                 V V      M AK            G+E  D+VSW ++++GLV N  + EA   
Sbjct: 234 FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQL 293

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           F +  S     T +T ++++  CA+   +   +++H   +  G     +V +AL+D Y+K
Sbjct: 294 FHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSK 353

Query: 398 CGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTA 455
            G +  A  +F  MS  +N V+W +MI GC  +G    A  LF++M E+    +  +++ 
Sbjct: 354 AGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYST 413

Query: 456 VLTA 459
           +LTA
Sbjct: 414 ILTA 417



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 8/176 (4%)

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           +L  C S  +   GK++HG  I  G + GD+ V ++LVDMY K   + + R +F+ M +R
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           N VTW S++ G    G   + +ELF +M  E    + ++F +VL+     G+V+LG+R+ 
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVH 228

Query: 474 NMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
               +  K    +  + C  ++++  + G + EA  +   M T  D+  W  L+  
Sbjct: 229 ---AQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR-DMVSWNTLMAG 280


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 169/502 (33%), Positives = 269/502 (53%), Gaps = 36/502 (7%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R R L++ ++L  Q+      R       +++ Y +   +  A+ +FDE+P  N   W 
Sbjct: 122 VRYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 177

Query: 149 ALTGAYARRGYHQEAVTVFHE-----------MHIQGLKQNIFV--------IPSVLKAC 189
            +  AY + G  ++A  +F             M    +K+N  V        +P   +  
Sbjct: 178 GMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 237

Query: 190 GHLSDIG---TGEKIHSLVL-KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
            +    G    GE + +  L + S   D F  ++++  Y + G +++A++VFD M EK+ 
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS 297

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           V+ NA+++GYVQ     +A  L E +       NV +WNT+I+G++++GD       F  
Sbjct: 298 VSWNAIIAGYVQCKRMDQARELFEAMPCQ----NVSSWNTMITGYAQNGDIAQARNFFDR 353

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M  +    D +SW ++I+G   +   +EA   F EM   G     +T +S L  CA  A 
Sbjct: 354 MPQR----DSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAA 409

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GK++HG  +  G+E   +V +AL+ MY KCG I +A  +F+ + E+  V+WN+MI G
Sbjct: 410 LELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAG 469

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HG+  EA+ LF  M++   L D ++   VL+AC H GLV+ G   F  M + Y I  
Sbjct: 470 YARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITA 529

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
            ++HY CM+DLLGRAGRL +A  ++K M  EPD   WGALLGA + HGN EL E AAK +
Sbjct: 530 NSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMI 589

Query: 545 SELEPESAANNMLLTDLYANAG 566
            E+EP+++   +LL++LYA +G
Sbjct: 590 FEMEPDNSGMYVLLSNLYAASG 611



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 158/331 (47%), Gaps = 27/331 (8%)

Query: 209 SFGTDAFVVSSLIDM--YSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           S  TDA +V   I +  + + G  + A ++F+ M  +  ++ NAM+SG +       A  
Sbjct: 42  SLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQ 101

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           L E++ T     ++V+WN +ISG  +  +      LF  M     E DVVSW +++SG  
Sbjct: 102 LFEKMPT----RDLVSWNVMISGCVRYRNLRAARLLFDQM----PERDVVSWNAMLSGYA 153

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
            N    EA + F EM     C  S + + +L A      +   + +         + +L 
Sbjct: 154 QNGYVKEAKEIFDEMP----CKNSISWNGMLAAYVQNGRIEDARRLFESK----ADWELI 205

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
             + ++  Y K   + +AR +FD+M ER+ V+WN+MI G A +G   EA  LF   EE  
Sbjct: 206 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF---EESP 262

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
             D  ++TA+++     G+++  +R+F+ M EK  +      +  ++    +  R+ +A 
Sbjct: 263 VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQAR 317

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           E+ + M  + ++  W  ++     +G+I  A
Sbjct: 318 ELFEAMPCQ-NVSSWNTMITGYAQNGDIAQA 347



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 169/404 (41%), Gaps = 109/404 (26%)

Query: 223 MYSKCGSVEK---AKKVFDEMVEKDIVAMN------------------------------ 249
           M S C S +K   A+++F++M  +D+V+ N                              
Sbjct: 86  MISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSW 145

Query: 250 -AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ---- 304
            AM+SGY Q G   EA  + +E+       N ++WN +++ + ++G      +LF+    
Sbjct: 146 NAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLAAYVQNGRIEDARRLFESKAD 201

Query: 305 ------------------LMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKE- 340
                             L+ A+G+     E D VSW ++ISG   N    EA   F+E 
Sbjct: 202 WELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEES 261

Query: 341 ---------MLSQGFC-----------------PTSATISSILPACASAANMRRGKEIHG 374
                     +  G+                    S + ++I+        M + +E+  
Sbjct: 262 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFE 321

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
                 V       + ++  YA+ G I++AR  FD+M +R++++W ++I G A  GY +E
Sbjct: 322 AMPCQNVSS----WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 377

Query: 435 AIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A+ LF +M+ + ++L+  +FT+ L+ C  +  +ELG+++        +++       C V
Sbjct: 378 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHG------RVVKAGLESGCYV 431

Query: 494 D-----LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                 +  + G + +AY + + +  E ++  W  ++     HG
Sbjct: 432 GNALLVMYCKCGNIDDAYIVFEGIE-EKEVVSWNTMIAGYARHG 474



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 15/245 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H +++ +GL     +   L+  Y +C NI  A ++F+ I +  +  W  +  
Sbjct: 409 ALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIA 468

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LSDIGTGEKIHSLVLKHSF 210
            YAR G+ +EA+ +F  M   G+  +   +  VL AC H  L D GT E  +S+   +  
Sbjct: 469 GYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGT-EYFYSMTQDYGI 527

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALN 266
             ++   + +ID+  + G ++ A+ +   M  E D     A++      G   L  +A  
Sbjct: 528 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 587

Query: 267 LVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEP-DVVSWTSVISG 324
           ++ E+     +P+      L+S  ++ SG    V ++   MR +GV+     SW  V   
Sbjct: 588 MIFEM-----EPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEV-QN 641

Query: 325 LVHNF 329
            +H F
Sbjct: 642 KIHTF 646



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 56/271 (20%)

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           ++V WN  I+   ++G      +LF  M  +      +SW ++ISG + N     A   F
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSS----ISWNAMISGCLSNDKFYLARQLF 103

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           ++M ++     +  IS     C    N+R                               
Sbjct: 104 EKMPTRDLVSWNVMIS----GCVRYRNLR------------------------------- 128

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLT 458
                AR LFD+M ER+ V+WN+M+ G A +GY  EA E+F++M  +   + +S+  +L 
Sbjct: 129 ----AARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK---NSISWNGMLA 181

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           A    G +E  +RLF    +   I      + CM+    +  RL +A  +   M  E D 
Sbjct: 182 AYVQNGRIEDARRLFESKADWELI-----SWNCMMGGYVKRNRLVDARGIFDRMP-ERDE 235

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELEP 549
             W  ++     +G +    + A+ L E  P
Sbjct: 236 VSWNTMISGYAQNGEL----LEAQRLFEESP 262



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)

Query: 385 LHVRSALVDMYA------KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           LH RS L  +        K    ++ +T     ++ + V WN  I     +G CD A+ L
Sbjct: 12  LHSRSCLRSLQTTTTANRKPSTRNQPKTTSSLATDADIVKWNIAITNHMRNGQCDSALRL 71

Query: 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
           FN M  R     +S+ A+++ C       L ++LF  M  +  +        C+     R
Sbjct: 72  FNSMPRRSS---ISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLR 128

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           A RL     +   M  E D+  W A+L     +G ++ A+
Sbjct: 129 AARL-----LFDQMP-ERDVVSWNAMLSGYAQNGYVKEAK 162


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 251/465 (53%), Gaps = 45/465 (9%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P+ N+  W A+    ++     EA+  F  M I G     F   S ++AC  L  I  G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +++H L LK   G++ FV S+L DMYSKCG++  A KVF+EM  KD V+  AM+ GY + 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 259 GLATEAL----NLVEE---------------------------IGTPRVK----PNVVTW 283
           G   EAL     +++E                           + +  VK     ++   
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCNDEAFDTFKE 340
           N L   +SK+GD    S +F      G++ +   VVS+T +I G V     ++    F E
Sbjct: 181 NALTDMYSKAGDMESASNVF------GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVE 234

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           +  QG  P   T SS++ ACA+ A + +G ++H   + +  + D  V S LVDMY KCG 
Sbjct: 235 LRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGL 294

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           + +A   FD++ +   + WNS++     HG   +AI++F +M +R  K + ++F ++LT 
Sbjct: 295 LEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTG 354

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C H GLVE G   F  M + Y ++P  EHY+C++DLLGRAGRL EA E I  M  EP+ F
Sbjct: 355 CSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAF 414

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
            W + LGAC+ HG+ E+ ++AA+ L +LEP+++   +LL+++YAN
Sbjct: 415 GWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYAN 459



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 178/386 (46%), Gaps = 36/386 (9%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           A+S  I       +++ GK +H   +  G+     + + L   Y++C  +  A  +F+E+
Sbjct: 43  AFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM 102

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P  +   W A+   Y++ G  +EA+  F +M  + +  +  V+ S L ACG L     G 
Sbjct: 103 PCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGR 162

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQR 258
            +HS V+K  F +D FV ++L DMYSK G +E A  VF    E +++V+   ++ GYV+ 
Sbjct: 163 SVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVET 222

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG---------DQVM---------VS 300
               + L++  E+    ++PN  T+++LI   +             QVM         VS
Sbjct: 223 EQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS 282

Query: 301 KLFQLMRAK-GV------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
            +   M  K G+            +P  ++W S++S    +    +A   F+ M+ +G  
Sbjct: 283 SILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVK 342

Query: 348 PTSATISSILPACASAANMRRGKE-IHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEAR 405
           P + T  S+L  C+ A  +  G +  +      G V G+ H  S ++D+  + G + EA+
Sbjct: 343 PNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHY-SCVIDLLGRAGRLKEAK 401

Query: 406 TLFDKMS-ERNTVTWNSMIFGCANHG 430
              ++M  E N   W S +  C  HG
Sbjct: 402 EFINRMPFEPNAFGWCSFLGACRIHG 427


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/510 (31%), Positives = 270/510 (52%), Gaps = 71/510 (13%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD------------- 137
           ++ L  G+ +H+ ++  GL     +AT L+  Y +C +   A+++FD             
Sbjct: 155 NQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNAL 214

Query: 138 ------------------EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQN 178
                             ++P  +I  W ++   Y+++GY+ EA+ +F +M +   LK +
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPD 274

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F + S+L AC +L  +  G++IH+ +L+    T   V ++LI MY+K G VE A+ + +
Sbjct: 275 NFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVE 334

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
                ++                                 N++ + +L+ G++K G+   
Sbjct: 335 HNRTSNL---------------------------------NIIAFTSLLDGYTKLGNVKP 361

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             ++F  +R +    DVV+WT++I G V N   ++A + F+ M+++G  P S T++++L 
Sbjct: 362 AREIFNKLRDR----DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLS 417

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD-KMSERNTV 417
             +S   +  GK+IH  AI  G      V +AL+ MYAK G I+ A+ +FD    ++  V
Sbjct: 418 VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIV 477

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +W SMI   A HG   EAI LF +M     K DH+++  VL+AC HVGLVE G++ +NMM
Sbjct: 478 SWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMM 537

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            E ++I P   HYACM+DL GRAG L EAY  I++M  EPD   WG+LL +CK H N +L
Sbjct: 538 TEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADL 597

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           A++AA+ L  ++P ++   + L ++Y+  G
Sbjct: 598 AKVAAERLLLIDPGNSGAYLALANVYSACG 627



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 137/562 (24%), Positives = 255/562 (45%), Gaps = 89/562 (15%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           ++  ++  +R +   +G+ +H Q+I  GL     +   L+TFY +  ++  A  +FDE+P
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 141 KTNIHRWIALTGAYARRG--------------------------YHQ-----EAVTVFHE 169
             +   W  L   YA++G                          Y+Q      A+ +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M  + +  + F + +VL +C     +  G KIHS V+K   G+   V +SL++MY+KCG 
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
              AK VFD M  K+I   NA++S Y+Q G    A +  E++       ++V+WN++ISG
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMP----DRDIVSWNSMISG 248

Query: 290 FSKSGDQVMVSKLF-QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
           +S+ G  +    +F +++    ++PD  +  S++S       N E  +  K++ +     
Sbjct: 249 YSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSAC----ANLEKLNIGKQIHAYILRA 304

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV--RSALVDMYAKCGFISEART 406
            + T  ++  A  S      G EI    +      +L++   ++L+D Y K G +  AR 
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGL 465
           +F+K+ +R+ V W +MI G   +G  ++A+ELF  M  E  + +  +  A+L+    + +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 466 VELG-----------------------------------QRLFNMMQEKYKIMPRTEHYA 490
           +E G                                   +R+F++   K +I+  T    
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTS--- 481

Query: 491 CMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS-- 545
            M+  L + G   EA   +E + ++  +PD   +  +L AC + G +E        ++  
Sbjct: 482 -MIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEV 540

Query: 546 -ELEPESAANNMLLTDLYANAG 566
            E+EP + ++   + DLY  AG
Sbjct: 541 HEIEP-TLSHYACMIDLYGRAG 561


>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 508

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/480 (33%), Positives = 264/480 (55%), Gaps = 19/480 (3%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN--IHHARMLFDEIPKTNIHRWIA 149
           R  +S K +H  L+V G+    Q   +L+       N  + +AR +FD I   ++     
Sbjct: 8   RNPRSLKQIHGNLVVKGITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHNV 67

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   YA       A  ++  +    LK + F    +L+AC  L     G ++H  V+K  
Sbjct: 68  MVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLG 127

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           +  DAFV ++LI+M++KCG +  A  + DE  E+D+VA +A+++G+  +G    A  L +
Sbjct: 128 YFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFD 187

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
           E        ++V WN +++ ++K G+      L      +  E DVVSW ++I+G     
Sbjct: 188 EC----QHKDLVCWNVMVAAYAKYGEMEKARGLLD----RAPEKDVVSWNTIITGYTAKG 239

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR- 388
              EA +   EM   G  P  ATI S+L  CA+  ++  G+ IH     + +EG   +  
Sbjct: 240 LLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHS----LHLEGRPCISI 295

Query: 389 ---SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EE 444
              +ALV MYAKCG +  A  +F +M ER+  TWNS+I G A HG  +++++ FN+M +E
Sbjct: 296 LPGNALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDE 355

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
               + +SF  VL AC H GLVE GQR F++M  +Y+I P   HY+C+VD+LGR+G L E
Sbjct: 356 GLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDE 415

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           A+ ++ +M  EP + +W  LLGAC+ HG++ L ++A + L ++  +++ + +LL+ +YA+
Sbjct: 416 AFAIVSSMRCEPAVVIWRTLLGACRIHGDVALGKLARERLLKMNEDASGDYVLLSGIYAS 475


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/454 (34%), Positives = 258/454 (56%), Gaps = 20/454 (4%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T ++  Y +   +  A  LF E+P  N+  W  +   YAR G  Q+A+ +F  M  + + 
Sbjct: 68  TAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVV 127

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
               +I ++++ CG + D          +       D    ++++   +K G VE A+ +
Sbjct: 128 SWNTIITALVQ-CGRIEDA-------QRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARAL 179

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FD+M  +++V+ NAM++GY Q     EAL L + +   R  P   +WNT+I+GF ++G+ 
Sbjct: 180 FDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRM-PERDMP---SWNTMITGFIQNGEL 235

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISS 355
               KLF  M+    E +V++WT++++G V +  ++EA   F +ML+     P + T  +
Sbjct: 236 NRAEKLFGEMQ----EKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVT 291

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK--MSE 413
           +L AC+  A +  G++IH        +    V SAL++MY+KCG +  AR +FD   +S+
Sbjct: 292 VLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQ 351

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL 472
           R+ ++WN MI   A+HGY  EAI LFN+M+E     + ++F  +LTAC H GLVE G + 
Sbjct: 352 RDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKY 411

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ + +   I  R +HYAC+VDL GRAGRL EA  +I+ +  E  L VWGALL  C  HG
Sbjct: 412 FDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHG 471

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           N ++ ++ A+ + ++EP++A    LL+++YA+ G
Sbjct: 472 NADIGKLVAEKILKIEPQNAGTYSLLSNMYASVG 505



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 150/307 (48%), Gaps = 27/307 (8%)

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
           G ++ A+KVF+EM E+DI     M++GY++ G+  EA  L +       K NVVTW  ++
Sbjct: 15  GEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDA---KKNVVTWTAMV 71

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           +G+ K        +LF  M  +    +VVSW +++ G   N    +A D F+ M  +   
Sbjct: 72  NGYIKFNQVKEAERLFYEMPLR----NVVSWNTMVDGYARNGLTQQALDLFRRMPERNVV 127

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             + TI + L  C    + +R             + D+   + +V   AK G + +AR L
Sbjct: 128 SWN-TIITALVQCGRIEDAQR-------LFDQMKDRDVVSWTTMVAGLAKNGRVEDARAL 179

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467
           FD+M  RN V+WN+MI G A +   DEA++LF +M ER   D  S+  ++T     G + 
Sbjct: 180 FDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPER---DMPSWNTMITGFIQNGELN 236

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY----EMIKTMSTEPDLFVWGA 523
             ++LF  MQEK  I      +  M+    + G   EA     +M+ T   +P+   +  
Sbjct: 237 RAEKLFGEMQEKNVIT-----WTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVT 291

Query: 524 LLGACKN 530
           +LGAC +
Sbjct: 292 VLGACSD 298



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 8/235 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE--IPKTNIHRWIAL 150
            L  G+ +H  +  +     T + + LI  Y++C  +H AR +FD+  + + ++  W  +
Sbjct: 301 GLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGM 360

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-S 209
             AYA  GY +EA+ +F+EM   G+  N      +L AC H   +  G K    +LK+ S
Sbjct: 361 IAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRS 420

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNLV 268
                   + L+D+  + G +++A  + + + E+  +    A+++G    G A     + 
Sbjct: 421 IQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVA 480

Query: 269 EEIGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           E+I   +++P N  T++ L + ++  G     + +   M+  G++     SW  V
Sbjct: 481 EKI--LKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEV 533


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 174/520 (33%), Positives = 277/520 (53%), Gaps = 39/520 (7%)

Query: 74  FHLSPA-AYSERIEIY--IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH 130
            H SP   + ER ++   +R R L++ ++L  Q+      R       +++ Y +   + 
Sbjct: 23  LHASPEFDFLERHDLRGCVRYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVK 78

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE-----------MHIQGLKQNI 179
            A+ +FDE+P  N   W  +  AY + G  ++A  +F             M    +K+N 
Sbjct: 79  EAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNR 138

Query: 180 FV--------IPSVLKACGHLSDIG---TGEKIHSLVL-KHSFGTDAFVVSSLIDMYSKC 227
            V        +P   +   +    G    GE + +  L + S   D F  ++++  Y + 
Sbjct: 139 LVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQN 198

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
           G +++A++VFD M EK+ V+ NA+++GYVQ     +A  L E +       NV +WNT+I
Sbjct: 199 GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ----NVSSWNTMI 254

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           +G++++GD       F  M  +    D +SW ++I+G   +   +EA   F EM   G  
Sbjct: 255 TGYAQNGDIAQARNFFDRMPQR----DSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 310

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
              +T +S L  CA  A +  GK++HG  +  G+E   +V +AL+ MY KCG I +A  +
Sbjct: 311 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIV 370

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLV 466
           F+ + E+  V+WN+MI G A HG+  EA+ LF  M++   L D ++   VL+AC H GLV
Sbjct: 371 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 430

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           + G   F  M + Y I   ++HY CM+DLLGRAGRL +A  ++K M  EPD   WGALLG
Sbjct: 431 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 490

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           A + HGN EL E AAK + E+EP+++   +LL++LYA +G
Sbjct: 491 ASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASG 530



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 15/245 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H +++ +GL     +   L+  Y +C NI  A ++F+ I +  +  W  +  
Sbjct: 328 ALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIA 387

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LSDIGTGEKIHSLVLKHSF 210
            YAR G+ +EA+ +F  M   G+  +   +  VL AC H  L D GT E  +S+   +  
Sbjct: 388 GYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGT-EYFYSMTQDYGI 446

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALN 266
             ++   + +ID+  + G ++ A+ +   M  E D     A++      G   L  +A  
Sbjct: 447 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 506

Query: 267 LVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEP-DVVSWTSVISG 324
           ++ E+     +P+      L+S  ++ SG    V ++   MR +GV+     SW  V   
Sbjct: 507 MIFEM-----EPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEV-QN 560

Query: 325 LVHNF 329
            +H F
Sbjct: 561 KIHTF 565


>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
 gi|238005588|gb|ACR33829.1| unknown [Zea mays]
 gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
          Length = 569

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 266/507 (52%), Gaps = 45/507 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA--RR 157
           +HA+ IV G++     AT L+       ++ +AR +FD  P  + + W  L  A++  + 
Sbjct: 40  IHARAIVLGVSANPAFATSLLAGVAPA-SLAYARRVFDATPVRDAYMWNTLLRAHSHSQL 98

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
            +  + + ++  M   G+  + +  P VL AC    ++  G  +H  V++ +   D FV 
Sbjct: 99  SHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVVRFALAGDGFVH 158

Query: 218 SSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           S+LI MY + G V  A+ VF E     + +V+  +MV+GYVQ     EA+ L   +    
Sbjct: 159 SALITMYFQEGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEG 218

Query: 276 VKPNVVT------------W-----------------------NTLISGFSKSGDQVMVS 300
           V PN +T            W                       N LI+ + K G   M  
Sbjct: 219 VLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQ 278

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            LF+ M A+     + SW ++++    +    EA   F+ ML++       T+ S+L AC
Sbjct: 279 TLFEGMPAR----SLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVLSAC 334

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           A +  ++ GK +H  A   G++ D  + + LVDMYAKCG I+ AR +FD +  R+ V+W+
Sbjct: 335 ARSGALQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDCLRMRSVVSWS 394

Query: 421 SMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI   ANHG  +EA++LF+ M+ E  + +  +FTAVL AC H GLVE G + FN +   
Sbjct: 395 AMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVACGHSGLVEEGLKHFNSILSD 454

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y++ P  EHYACMVD+LGRAGRL EAYE+I+ MS  PD  VWGA L  CK HGN+ELAE 
Sbjct: 455 YQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGAFLAGCKLHGNLELAEF 514

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
            A+ L +         +L++++Y  AG
Sbjct: 515 VARDLFQSGSNDVTFYVLMSNMYFEAG 541



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 176/402 (43%), Gaps = 49/402 (12%)

Query: 64  HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFY 123
           HY  PI+       PA  + R E+++       G+ +H  ++   LA    + + LIT Y
Sbjct: 120 HYTYPIVL------PACAAAR-ELWL-------GRAVHGDVVRFALAGDGFVHSALITMY 165

Query: 124 TECQNIHHARMLFDEIPKTN--IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            +   +  A ++F E   ++  +  W ++   Y +  Y  EAV +F  M  +G+  N   
Sbjct: 166 FQEGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVALFGTMIAEGVLPNEIT 225

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + S L        +  GE +H  V++  F  +  + ++LI MY KCGS+  A+ +F+ M 
Sbjct: 226 LISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLFEGMP 285

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
            + + + N MV+ Y Q     EA+     + T +V  + VT  +++S  ++SG       
Sbjct: 286 ARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQTGKW 345

Query: 302 LFQLMRAKGVEPD-------------------------------VVSWTSVISGLVHNFC 330
           + +L R  G++ D                               VVSW+++IS   ++  
Sbjct: 346 VHELARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDCLRMRSVVSWSAMISAYANHGA 405

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRS 389
           ++EA   F  M ++G  P S T +++L AC  +  +  G K  +       +   L   +
Sbjct: 406 SEEALKLFSLMKNEGVRPNSFTFTAVLVACGHSGLVEEGLKHFNSILSDYQMSPTLEHYA 465

Query: 390 ALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHG 430
            +VDM  + G + EA  +   MS   +   W + + GC  HG
Sbjct: 466 CMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGAFLAGCKLHG 507



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 142/321 (44%), Gaps = 5/321 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+++H  +I  G      +A  LI  Y +C +I  A+ LF+ +P  ++  W  +   
Sbjct: 239 LDAGEMVHGFVIRLGFDANIPLANALIAMYGKCGSIPMAQTLFEGMPARSLASWNTMVAM 298

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +     EA+  F  M  + +  +   + SVL AC     + TG+ +H L   H   TD
Sbjct: 299 YEQHADVVEAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALQTGKWVHELARNHGLDTD 358

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           A + + L+DMY+KCG +  A+ VFD +  + +V+ +AM+S Y   G + EAL L   +  
Sbjct: 359 ARIGNVLVDMYAKCGEIASARNVFDCLRMRSVVSWSAMISAYANHGASEEALKLFSLMKN 418

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-LMRAKGVEPDVVSWTSVISGLVHNFCND 332
             V+PN  T+  ++     SG      K F  ++    + P +  +  ++  L       
Sbjct: 419 EGVRPNSFTFTAVLVACGHSGLVEEGLKHFNSILSDYQMSPTLEHYACMVDMLGRAGRLI 478

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA++  + M     CP      + L  C    N+    E     +      D+     + 
Sbjct: 479 EAYEIIRGM---SLCPDKCVWGAFLAGCKLHGNLELA-EFVARDLFQSGSNDVTFYVLMS 534

Query: 393 DMYAKCGFISEARTLFDKMSE 413
           +MY + G + +A  +   M E
Sbjct: 535 NMYFEAGMLKDAERMRWAMKE 555


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/510 (31%), Positives = 270/510 (52%), Gaps = 71/510 (13%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD------------- 137
           ++ L  G+ +H+ ++  GL     +AT L+  Y +C +   A+++FD             
Sbjct: 155 NQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNAL 214

Query: 138 ------------------EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQN 178
                             ++P  +I  W ++   Y+++GY+ EA+ +F +M +   LK +
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPD 274

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F + S+L AC +L  +  G++IH+ +L+    T   V ++LI MY+K G VE A+ + +
Sbjct: 275 NFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVE 334

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
                ++                                 N++ + +L+ G++K G+   
Sbjct: 335 HNRTSNL---------------------------------NIIAFTSLLDGYTKLGNVKP 361

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             ++F  +R +    DVV+WT++I G V N   ++A + F+ M+++G  P S T++++L 
Sbjct: 362 AREIFNKLRDR----DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLS 417

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD-KMSERNTV 417
             +S   +  GK+IH  AI  G      V +AL+ MYAK G I+ A+ +FD    ++  V
Sbjct: 418 VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIV 477

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +W SMI   A HG   EAI LF +M     K DH+++  VL+AC HVGLVE G++ +NMM
Sbjct: 478 SWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMM 537

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            E ++I P   HYACM+DL GRAG L EAY  I++M  EPD   WG+LL +CK H N +L
Sbjct: 538 TEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADL 597

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           A++AA+ L  ++P ++   + L ++Y+  G
Sbjct: 598 AKVAAERLLLIDPGNSGAYLALANVYSACG 627



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 137/562 (24%), Positives = 255/562 (45%), Gaps = 89/562 (15%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           ++  ++  +R +   +G+ +H Q+I  GL     +   L+TFY +  ++  A  +FDE+P
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 141 KTNIHRWIALTGAYARRG--------------------------YHQ-----EAVTVFHE 169
             +   W  L   YA++G                          Y+Q      A+ +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M  + +  + F + +VL +C     +  G KIHS V+K   G+   V +SL++MY+KCG 
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
              AK VFD M  K+I   NA++S Y+Q G    A +  E++       ++V+WN++ISG
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMP----DRDIVSWNSMISG 248

Query: 290 FSKSGDQVMVSKLF-QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
           +S+ G  +    +F +++    ++PD  +  S++S       N E  +  K++ +     
Sbjct: 249 YSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSAC----ANLEKLNIGKQIHAYILRA 304

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV--RSALVDMYAKCGFISEART 406
            + T  ++  A  S      G EI    +      +L++   ++L+D Y K G +  AR 
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGL 465
           +F+K+ +R+ V W +MI G   +G  ++A+ELF  M  E  + +  +  A+L+    + +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 466 VELG-----------------------------------QRLFNMMQEKYKIMPRTEHYA 490
           +E G                                   +R+F++   K +I+  T    
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTS--- 481

Query: 491 CMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS-- 545
            M+  L + G   EA   +E + ++  +PD   +  +L AC + G +E        ++  
Sbjct: 482 -MIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEV 540

Query: 546 -ELEPESAANNMLLTDLYANAG 566
            E+EP + ++   + DLY  AG
Sbjct: 541 HEIEP-TLSHYACMIDLYGRAG 561


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 163/513 (31%), Positives = 273/513 (53%), Gaps = 40/513 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++GK +HA  ++ GL     ++  L + Y  C  +  AR +FD   + +   W +L   
Sbjct: 119 LRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSG 178

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG--TGEKIHSLVLKHSFG 211
           Y R G  +E + VF  M   GL  N F + S++K C   SD+G    E +H  V+K    
Sbjct: 179 YVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLD 238

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY------VQRGLATEAL 265
            D F+ S++IDMY+K G++  A  +F  + + +++  NAM++G+      V + ++ EAL
Sbjct: 239 ADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREAL 298

Query: 266 NLVEEIGTPRVKPNVVTWNTLIS--------GFSKS-----------GDQVMVSKLFQLM 306
           +L  E+ +  ++P+  T+++++         GF K             D  + S L  L 
Sbjct: 299 SLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLY 358

Query: 307 RAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
              G             + D+V+WTS+ISG V N   ++A   F+E +  G  P   T+S
Sbjct: 359 SDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMS 418

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++ ACAS A  R G++I   AI  G      + ++ + M A+ G +      F +M  R
Sbjct: 419 SVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESR 478

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLF 473
           + V+W+++I   A HG   +A+ +FN+M   K   + ++F  VLTAC H GLV+ G R +
Sbjct: 479 DVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYY 538

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            +M+ +Y + P  +H  C+VDLLGRAGRLA+A   I+  +   D  VW +LL +C+ HG+
Sbjct: 539 EIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGD 598

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +E  ++ A  + +LEP S+A+ ++L ++Y +AG
Sbjct: 599 MERGQLVADQIMDLEPTSSASYVILYNMYLDAG 631



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 204/447 (45%), Gaps = 51/447 (11%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKAC 189
           HA  L DE+P+ N   +  L  +Y+R G    A+  F       GL+ + F   + L AC
Sbjct: 54  HAARLIDEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAAC 113

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
               D+ TG+ +H++ +    G   F+ +SL  MY+ CG + +A++VFD   E D V+ N
Sbjct: 114 SRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWN 173

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI----SGFS-------------- 291
           +++SGYV+ G   E L +   +    +  N     ++I    SG                
Sbjct: 174 SLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVV 233

Query: 292 KSG---DQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCND---- 332
           K+G   D  + S +  +   +G             +P+V+ + ++I+G    FC D    
Sbjct: 234 KAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAG----FCRDEAAV 289

Query: 333 ------EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
                 EA   + EM S+G  P+  T SSIL AC  A     GK+IHG  +      D +
Sbjct: 290 GKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDY 349

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEER 445
           + SAL+D+Y+  G + +    F  + +++ VTW SMI GC  +   ++A+ LF + +   
Sbjct: 350 IGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYG 409

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            K D  + ++V+ AC  + +   G+++   +  KY     T      + +  R+G +   
Sbjct: 410 LKPDLFTMSSVMNACASLAVARTGEQI-QCLAIKYGFNRFTAMGNSFIHMCARSGDVDAV 468

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHG 532
               + M +  D+  W A++ +   HG
Sbjct: 469 TRRFQEMESR-DVVSWSAVISSHAQHG 494



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 202/427 (47%), Gaps = 55/427 (12%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR--- 156
           +H  ++ +GL     +A+ +I  Y +   + +A  LF  +P  N+  + A+   + R   
Sbjct: 228 VHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEA 287

Query: 157 ---RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
              +   +EA++++ EM  +G++ + F   S+L+AC    + G G++IH  VLKHSF  D
Sbjct: 288 AVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDD 347

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            ++ S+LID+YS  G +E   + F  + ++DIV   +M+SG VQ  L  +AL L +E   
Sbjct: 348 DYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESIC 407

Query: 274 PRVKPNVVTWNTLIS---------------------GF--------------SKSGDQVM 298
             +KP++ T +++++                     GF              ++SGD   
Sbjct: 408 YGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDA 467

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           V++ FQ M ++    DVVSW++VIS    + C  +A   F EM++    P   T  ++L 
Sbjct: 468 VTRRFQEMESR----DVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLT 523

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDL-----HVRSALVDMYAKCGFISEARTLF-DKMS 412
           AC+    +  G   +    +M  E  L     HV + +VD+  + G +++A     D   
Sbjct: 524 ACSHGGLVDDGLRYYE---IMKNEYGLSPTIKHV-TCVVDLLGRAGRLADAEAFIRDSAF 579

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472
             + V W S++  C  HG  +    + +Q+ + +     S+  +       G + L  + 
Sbjct: 580 HDDAVVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKT 639

Query: 473 FNMMQEK 479
            ++M+E+
Sbjct: 640 RDLMKER 646



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 143/310 (46%), Gaps = 52/310 (16%)

Query: 249 NAMVSGYVQRGLAT--EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
           N++++ Y + G+     A  L++E+  PR   N V++N LIS +S++G            
Sbjct: 38  NSLLAAYCRLGVGAPLHAARLIDEM--PR--RNAVSYNLLISSYSRAG------------ 81

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAAN 365
                          + G         A +TF    +  G      T ++ L AC+ A +
Sbjct: 82  ---------------LPG--------RALETFARARAAAGLRVDRFTYAAALAACSRALD 118

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +R GK +H   ++ G+   + + ++L  MYA CG + EAR +FD   E + V+WNS++ G
Sbjct: 119 LRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSG 178

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFT-AVLTACCHVGLVELGQRLFNMMQE---KYK 481
               G  +E +++F+ M     L   SF    +  CC  G  ++G+ +   +     K  
Sbjct: 179 YVRAGAREETLKVFSLMCHH-GLGWNSFALGSIIKCCASG-SDVGRHIAEAVHGCVVKAG 236

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNI--ELAE 538
           +       + M+D+  + G L  A  + K++  +P++ V+ A++ G C++   +  E++ 
Sbjct: 237 LDADLFLASAMIDMYAKRGALTNAVALFKSV-PDPNVIVFNAMIAGFCRDEAAVGKEVSR 295

Query: 539 IAAKHLSELE 548
            A    SE++
Sbjct: 296 EALSLYSEMQ 305


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 250/473 (52%), Gaps = 43/473 (9%)

Query: 96  SGKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
            G+ +H   +  G +     +   L+ FY   +++  A  +FDE+P+ ++  W  L   Y
Sbjct: 160 GGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGY 219

Query: 155 ARRGYHQEAVTVFHEMHI-QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           AR G   EA  +F  M +  G++ N   + + + A G +  +  G  +H  V +      
Sbjct: 220 ARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARS 279

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + ++L+DM+ KCG V  A++VFD M  KD                             
Sbjct: 280 VNLDNALVDMFGKCGCVRYAREVFDGMEVKD----------------------------- 310

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                 V +W ++++ ++K GD     +LF+ M  +    +VVSW+ +I+        +E
Sbjct: 311 ------VYSWTSMVNAYAKCGDLESAEQLFKDMPRR----NVVSWSCMIAAYSQLNQPEE 360

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG-DLHVRSALV 392
           A   F+EM++ G  P  AT+ S+L ACA    +  G+ I+   IV    G  +++ +AL+
Sbjct: 361 AVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALI 420

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
           DM+AKCG + EA  LFD+M+ERN V+WN+MI   A HG  +EAI LF Q++ E    D +
Sbjct: 421 DMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQI 480

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  +L +C H GLV  G+R F  M+  Y+I PR EHYACM+DLLG+ G L EA+E+ + 
Sbjct: 481 TFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARG 540

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           M  E D   WGALL AC+ HGN+E+    A  L EL+P  +   +L++ +YA+
Sbjct: 541 MPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYAS 593



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 148/306 (48%), Gaps = 12/306 (3%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T ++  Y +C ++  A  LF ++P+ N+  W  +  AY++    +EAV +F EM   G+ 
Sbjct: 315 TSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVD 374

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
                + SVL AC  L  +  G  I+ + ++ +  G    + ++LIDM++KCG V +A K
Sbjct: 375 PIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASK 434

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           +FDEM E+++V+ N M+  +   G + EA+ L E++    + P+ +T+  L++  S SG 
Sbjct: 435 LFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGL 494

Query: 296 QVMVSKLFQLMRA-KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                + F+ M     +EP V  +  +I  L      +EAF+  + M  +      A   
Sbjct: 495 VSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEA---DEAGWG 551

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVE---GDLHVRSALVDMYAKCGFISEARTLFDKM 411
           ++L AC    N+    EI  C     VE    D  +   +  +YA      + + L   M
Sbjct: 552 ALLNACRMHGNV----EIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTM 607

Query: 412 SERNTV 417
            +R TV
Sbjct: 608 RDRGTV 613



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 94  LQSGKILHAQLIVSGLARLT-QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L  G+ ++   IVS    LT  +   LI  + +C ++  A  LFDE+ + N+  W  +  
Sbjct: 393 LDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIM 452

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
           A+A  G  +EA+ +F ++  + +  +      +L +C H   +  G +    + + +   
Sbjct: 453 AHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIE 512

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS 253
                 + +ID+  K G +E+A +V   M +E D     A+++
Sbjct: 513 PRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLN 555


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/480 (32%), Positives = 263/480 (54%), Gaps = 58/480 (12%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  ++   +++ + +AT+++      + + HA  +F ++   N+H   A+  AYA+   
Sbjct: 33  VHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQ 92

Query: 160 HQEAVTVFHEM----------HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           H++AV V+  M          H  G +   F  P +LKACG  + +  G+++H+ V++  
Sbjct: 93  HRDAVAVYIRMLRCPTSPPDGHAGGDR---FTYPFLLKACGGTAALELGKQVHTHVVRSG 149

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             + A V +SLI+MY++ G +  A KVFDEM E+D                         
Sbjct: 150 CDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD------------------------- 184

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVISGLVH 327
                     VV+WN LIS  ++ G     + LF  M      PD  +V+WT+++SG   
Sbjct: 185 ----------VVSWNMLISAHARLGQMRKATALFNSM------PDKTIVTWTAMVSGYTT 228

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                 A D F+ M ++GF P   +I ++LPACA    +  G+ I+      G+    H+
Sbjct: 229 VGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHI 288

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            +AL++MYAKCG I +A  LFD M++++ ++W+++I G A HG   EA+ LF +ME+  K
Sbjct: 289 CNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGK 348

Query: 448 L--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
           +  + ++F  +L+AC + GLV+ G   F+ M + Y + P  EHY C+VDLLGR+G++  A
Sbjct: 349 VRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRA 408

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            ++++ M    D  VWG+LL AC++HG+++ A +AA+ L ELEP+   N ++L ++YA A
Sbjct: 409 LDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAA 468



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 40/309 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH---------------------- 130
           AL+ GK +H  ++ SG      +   LI  YT   ++                       
Sbjct: 134 ALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLIS 193

Query: 131 -HARM--------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            HAR+        LF+ +P   I  W A+   Y   G +  AV  F  M  +G + +   
Sbjct: 194 AHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVS 253

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           I +VL AC  L  +  G  I++   +H   T   + ++L++MY+KCG +++A ++FD M 
Sbjct: 254 IVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMA 313

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGFSKSG--DQVM 298
           +KD+++ + ++ G    G A EA+ L  E+    +V+PNV+T+  L+S  S +G  D+ +
Sbjct: 314 DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGL 373

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI-SSIL 357
            S   ++    GVEP V  +  V+  L  +     A D  ++M      P  A +  S+L
Sbjct: 374 -SHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMP----VPADAKVWGSLL 428

Query: 358 PACASAANM 366
            AC S  ++
Sbjct: 429 SACRSHGDV 437


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 262/478 (54%), Gaps = 14/478 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIA 149
           +++   K + +Q++++GL      +++LI F   +E +++ +   +       N   W  
Sbjct: 61  KSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNV 120

Query: 150 LTGAYARRGYHQEAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
               +      +EAV ++   +   G K + +  P + KAC  LS I  G +I   VL  
Sbjct: 121 AIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHL 180

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
            F +D FV +++I +   CG ++ A+K+FD+   +D+V+ N+M++GY   G    A  L 
Sbjct: 181 GFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYC--GNLESARKLF 238

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
           + +        +V+W T++ G+++SG   M  KLF  M  K    DVV W ++I G VH 
Sbjct: 239 DSM----TNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDK----DVVPWNAMIGGYVHA 290

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               EA   F EM +    P   T+ S L AC+    +  G  IH       +  ++ + 
Sbjct: 291 NRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALG 350

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           +AL+DMYAKCG I++A  +F ++  RN++TW ++I G A HG    AI  F++M +   +
Sbjct: 351 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 410

Query: 449 -DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            D ++F  +L+ACCH GLVE G++ F+ M  K+ + P+ +HY+CMVDLLGRAG L EA E
Sbjct: 411 PDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEE 470

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           +IK+M  E D  VWGAL  AC+ HGN+ + E AA  L +++P  +   +LL ++Y  A
Sbjct: 471 LIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEA 528



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 95/235 (40%), Gaps = 15/235 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G  +H  +    L+    + T LI  Y +C  I  A  +F E+P  N   W A+  
Sbjct: 327 ALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIIS 386

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFG 211
             A  G    A+  F EM    +  +      +L AC H   +  G K  S +  K +  
Sbjct: 387 GLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS 446

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM-----VSGYVQRGLATEAL 265
                 S ++D+  + G +E+A+++   M +E D V   A+     + G V  G    A 
Sbjct: 447 PKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMG-ERAAS 505

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM-VSKLFQLMRAKGVEPDVVSWT 319
            L++      + P+      L++      +      K  +LMR +GVE    SW+
Sbjct: 506 KLLQ------MDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPDSWS 554


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 174/541 (32%), Positives = 267/541 (49%), Gaps = 59/541 (10%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           S  +Y+  I  Y+R+      + L  Q+    L         ++T Y     +  AR LF
Sbjct: 79  SSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNV----MLTGYVRNCRLGDARRLF 134

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM------HIQGLKQNIFVIPSVLKACG 190
           D +P+ ++  W +L   YA+ GY  EA  VF  M         GL         + +AC 
Sbjct: 135 DLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACL 194

Query: 191 HLSDIGTGEKIH------SLVLKHSFGT-----------DAFVVSSLIDMYSKCGSVEKA 233
                   + I         V K   G            DA   +++I  Y++ G + +A
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI-------------GTPRVKP-- 278
           +++FDE   +D+    AMVSGYVQ G+  EA    +E+             G  + K   
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 279 ------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                       N+ +WNT+I+G+ + GD     K F +M  +    D VSW ++I+G  
Sbjct: 315 IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR----DCVSWAAIIAGYA 370

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
            +   +EA + F E+   G     AT    L  CA  A +  GK+IHG A+ MG      
Sbjct: 371 QSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCF 430

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           V +AL+ MY KCG I EA   F+ + E++ V+WN+M+ G A HG+  +A+ +F  M+   
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAG 490

Query: 447 -KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            K D ++   VL+AC H GL++ G   F  M + Y ++P ++HY CM+DLLGRAGRL EA
Sbjct: 491 VKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEA 550

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            ++I+ M  +P    WGALLGA + HGN EL E AA+ + ++EP+++   +LL++LYA +
Sbjct: 551 QDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAAS 610

Query: 566 G 566
           G
Sbjct: 611 G 611



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 11/336 (3%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           +Y+  I  Y++ + +   +    +L  S   R       +IT Y +  +I  AR  FD +
Sbjct: 299 SYNAMIAGYVQTKKMDIAR----ELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMM 354

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P+ +   W A+   YA+ G+++EA+ +F E+   G   N       L  C  ++ +  G+
Sbjct: 355 PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGK 414

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH   +K  +GT  FV ++L+ MY KCGS+++A   F+ + EKD+V+ N M++GY + G
Sbjct: 415 QIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHG 474

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSW 318
              +AL + E + T  VKP+ +T   ++S  S +G     ++ F  M +  GV P    +
Sbjct: 475 FGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHY 534

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           T +I  L      +EA D  + M    F P +A+  ++L A     N   G++       
Sbjct: 535 TCMIDLLGRAGRLEEAQDLIRNM---PFQPGAASWGALLGASRIHGNTELGEKAAEMVFK 591

Query: 379 MGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSE 413
           M  +   ++V   L ++YA  G   +A  +  KM +
Sbjct: 592 MEPQNSGMYV--LLSNLYAASGRWVDADKMRSKMRD 625



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 195/428 (45%), Gaps = 54/428 (12%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +F+ +P+ +   + A+   Y R      A  +F +M  + L     ++   ++ C     
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC----R 126

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +G   ++  L+ +     D    +SL+  Y++ G V++A++VFD M EK+ ++ N +++ 
Sbjct: 127 LGDARRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182

Query: 255 YVQRGLATEALNLVE---------------------EIGTPRV----KP--NVVTWNTLI 287
           YV  G   EA  L E                     ++G  R      P  + ++WNT+I
Sbjct: 183 YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMI 242

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           SG+++ G      +LF     +    DV +WT+++SG V N   DEA   F EM  +   
Sbjct: 243 SGYAQGGGLSQARRLFDESPTR----DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV 298

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             +A I+  +        M   +E+        +       + ++  Y + G I++AR  
Sbjct: 299 SYNAMIAGYV----QTKKMDIARELFESMPCRNISS----WNTMITGYGQIGDIAQARKF 350

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLV 466
           FD M +R+ V+W ++I G A  G+ +EA+ +F ++ ++ + L+  +F   L+ C  +  +
Sbjct: 351 FDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAAL 410

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           ELG+++     +  K+   T  +    ++ +  + G + EA +  + +  E D+  W  +
Sbjct: 411 ELGKQIHG---QAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTM 466

Query: 525 LGACKNHG 532
           L     HG
Sbjct: 467 LAGYARHG 474



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 159/352 (45%), Gaps = 48/352 (13%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    +  I  + + G  + A  VF+ M  +  V+ NAM+SGY++      A NL +++ 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM- 106

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + ++ +WN +++G+ ++       +LF LM     E DVVSW S++SG   N   D
Sbjct: 107 ---PERDLFSWNVMLTGYVRNCRLGDARRLFDLM----PEKDVVSWNSLLSGYAQNGYVD 159

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSAL 391
           EA + F  M  +     S + + +L     AA +  G+    C +     + DL   + L
Sbjct: 160 EAREVFDNMPEK----NSISWNGLL-----AAYVHNGRIEEACLLFESKSDWDLISWNCL 210

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451
           +  + +   + +AR LFDKM  R+ ++WN+MI G A  G   +A  LF++   R   D  
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR---DVF 267

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKI------------------------MP--R 485
           ++TA+++     G+++  +  F+ M EK ++                        MP   
Sbjct: 268 TWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRN 327

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
              +  M+   G+ G +A+A +    M  + D   W A++      G+ E A
Sbjct: 328 ISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEA 378



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 17/226 (7%)

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           +PD++ W   IS  + N   D A   F  M  +     +A IS  L    S  N+ R   
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRN--SKFNLARN-- 101

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
                     E DL   + ++  Y +   + +AR LFD M E++ V+WNS++ G A +GY
Sbjct: 102 ----LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157

Query: 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            DEA E+F+ M E+   + +S+  +L A  H G +E    LF    +   I      + C
Sbjct: 158 VDEAREVFDNMPEK---NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI-----SWNC 209

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++    R  +L +A  +   M    D   W  ++      G +  A
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQGGGLSQA 254



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           ++ + + + WN  I     +G+CD A+ +FN M  R     +S+ A+++         L 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSS---VSYNAMISGY-------LR 92

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLG--RAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
              FN+ +  +  MP  + ++  V L G  R  RL +A  +   M  E D+  W +LL  
Sbjct: 93  NSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP-EKDVVSWNSLLSG 151

Query: 528 CKNHGNIELAEIAAKHLSE 546
              +G ++ A     ++ E
Sbjct: 152 YAQNGYVDEAREVFDNMPE 170


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 176/544 (32%), Positives = 269/544 (49%), Gaps = 74/544 (13%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           + I  R +A Q    LHAQ ++   A      + L++ Y+    +H +  LF+ I     
Sbjct: 17  LSIKSRSQAQQ----LHAQ-VLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPA 71

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W ++   Y   G   +++  F  M   GL  +  V PSVLK+C  L D+  GE +H  
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGY 131

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKA------------------------------- 233
           +++     D +  ++L++MYSK   +E++                               
Sbjct: 132 IIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDS 191

Query: 234 -KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
            +K+F+ M EKD+V+ N +++G  + GL  E L ++ E+G   +KP+  T ++++   ++
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251

Query: 293 SGD------------------QVMVSKLFQLMRAKGV-------------EPDVVSWTSV 321
           + D                   + V+     M AK               E D +SW S+
Sbjct: 252 NVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSI 311

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+G V N   DE    F++ML     P S + SSI+PACA    +  GK++HG     G 
Sbjct: 312 IAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGF 371

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           + ++ + S+LVDMYAKCG I  A+ +FD+M  R+ V+W +MI GCA HG   +AIELF Q
Sbjct: 372 DENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQ 431

Query: 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           ME           AVLTAC H GLV+   + FN M   + I P  EHYA + DLLGRAGR
Sbjct: 432 METE------GIKAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 485

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L EAY+ I  M   P   +W  LL AC+ H NI++AE  A  + E++P +    +LL ++
Sbjct: 486 LEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANI 545

Query: 562 YANA 565
           Y+ A
Sbjct: 546 YSAA 549


>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
          Length = 820

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 262/476 (55%), Gaps = 2/476 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ G   HA  IV+GL     + T L+ FY +   I +A M+FD + + ++  W  L  
Sbjct: 278 GVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLIS 337

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  ++A+ +   M ++ LK +   + +++ A     ++  G+++     +HS  +
Sbjct: 338 GYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLES 397

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+KCGS+  AKKVFD  VEKD++  N +++ Y + G + EAL L  E+ 
Sbjct: 398 DIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGHSGEALRLFYEMQ 457

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++ +     ++F  M++ G+ P+++SWT++++G+V N C++
Sbjct: 458 LESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLISWTTMMNGMVQNGCSE 517

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M   G  P + +I+  L A A+ A+   G+ IHG  I  +       + ++L
Sbjct: 518 EAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHSSSASIETSL 577

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
           VDMYAKCG I++A  +F+         +N+MI   A  G   EA+ L+  +E+   K D 
Sbjct: 578 VDMYAKCGDINKAERVFESKLSNELPLYNAMISAYALXGNVTEAVALYRSLEDMGXKPDS 637

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++FT++L+AC H G ++   R+F  M   + + P  EHY  +VDL   A    +A  +++
Sbjct: 638 ITFTSLLSACNHAGDIDQAIRVFTDMVSNHGVKPCLEHYGLLVDLFASAKETDKALRLME 697

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  +PD  +  +L+ +C      EL +  ++ L E EPE + N + +++ YA  G
Sbjct: 698 EMPYKPDXRMIQSLVASCNKQHKTELVDYLSRQLLETEPEXSGNYVTISNAYAVEG 753



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 257/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +GK +HA+++ +G   AR   I TKL+ FY +C ++
Sbjct: 53  RNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKCDDL 112

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A +LF ++   N+  W A+ G   R G  + A+  F EM    +  + FV+P+V KAC
Sbjct: 113 EIAEVLFSKLRVRNVFSWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKAC 172

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  VLK       FV SSL DMY KCG ++ A+KVFDE+ E+++VA N
Sbjct: 173 GALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWN 232

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L+ ++    V+P  VT +T +S  +                  
Sbjct: 233 ALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVN 292

Query: 295 ----DQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + L       G+            E DVV+W  +ISG V     ++A    
Sbjct: 293 GLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQQGLVEDAIYMC 352

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+++++ A A   N++ GKE+        +E D+ + S  +DMYAKC
Sbjct: 353 QLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKC 412

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I +A+ +FD   E++ + WN+++   A  G+  EA+ LF +M+ E    + +++  ++
Sbjct: 413 GSIVDAKKVFDSTVEKDLILWNTLLAAYAESGHSGEALRLFYEMQLESVPPNVITWNLII 472

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +      V   + +F  MQ    I P    +  M++ + + G   EA   ++ M     
Sbjct: 473 LSRLRNAEVNEAKEMFLQMQSS-GITPNLISWTTMMNGMVQNGCSEEAIHFLRKMQESGM 531

Query: 515 EPDLFVWGALLGACKNHGNIELAE-IAAKHLSELEPESAAN-NMLLTDLYANAG 566
            P+ F     L A  N  +      I    +  L   S+A+    L D+YA  G
Sbjct: 532 RPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHSSSASIETSLVDMYAKCG 585



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 225/470 (47%), Gaps = 56/470 (11%)

Query: 135 LFDEIPK-----TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
           L DE P+     +  HR      +  + G  +EA+++  EM  + L+    +   +L+ C
Sbjct: 14  LHDEQPQAPSSTSYFHR----VSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGC 69

Query: 190 GHLSDIGTGEKIHSLVLKHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
            +  D+ TG++IH+ +LK+   +  + ++ + L+  Y+KC  +E A+ +F ++  +++ +
Sbjct: 70  VYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVFS 129

Query: 248 MNAMVSGYVQRGLATEAL----NLVEEIGTPR--VKPNV------VTWNTLISGFS---- 291
             A++    + GL   AL     ++E    P   V PNV      + W+    G      
Sbjct: 130 WAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVL 189

Query: 292 KSG--DQVMVSKLFQLMRAK-GV------------EPDVVSWTSVISGLVHNFCNDEAFD 336
           K+G  D V V+     M  K GV            E +VV+W +++ G V N  N+EA  
Sbjct: 190 KAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIR 249

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
              +M   G  PT  T+S+ L A A+ A +  G + H  AIV G+E D  + ++L++ Y 
Sbjct: 250 LLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYC 309

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTA 455
           K G I  A  +FD+M E++ VTWN +I G    G  ++AI +   M  E+ K D ++   
Sbjct: 310 KVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLAT 369

Query: 456 VLTACCHVGLVELGQRL----FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +++A      ++LG+ +    F    E   ++  T      +D+  + G + +A ++  +
Sbjct: 370 LMSAAARTENLKLGKEVQCXCFRHSLESDIVLAST-----AMDMYAKCGSIVDAKKVFDS 424

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
            + E DL +W  LL A    G+   +  A +   E++ ES   N++  +L
Sbjct: 425 -TVEKDLILWNTLLAAYAESGH---SGEALRLFYEMQLESVPPNVITWNL 470



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 219/493 (44%), Gaps = 69/493 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++ +GL     +A+ L   Y +C  +  AR +FDEIP+ N+  W AL   Y +
Sbjct: 181 GRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQ 240

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  +M   G++     + + L A  +++ +  G + H++ + +    D  +
Sbjct: 241 NGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNIL 300

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SL++ Y K G +E A+ +FD M EKD+V  N ++SGYVQ+GL  +A+ + + +   ++
Sbjct: 301 GTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLEKL 360

Query: 277 KPNVVTWNTLISGFSKS-----GDQV---------------------MVSKLFQLMRAKG 310
           K + VT  TL+S  +++     G +V                     M +K   ++ AK 
Sbjct: 361 KYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKK 420

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                VE D++ W ++++    +  + EA   F EM  +   P   T + I+ +    A 
Sbjct: 421 VFDSTVEKDLILWNTLLAAYAESGHSGEALRLFYEMQLESVPPNVITWNLIILSRLRNAE 480

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN---------- 415
           +   KE+       G+  +L   + +++   + G   EA     KM E            
Sbjct: 481 VNEAKEMFLQMQSSGITPNLISWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITV 540

Query: 416 ----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV----GLVE 467
               +    S  FG + HGY              + L H S  ++ T+   +    G + 
Sbjct: 541 ALSASANLASXHFGRSIHGYI------------IRNLRHSSSASIETSLVDMYAKCGDIN 588

Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGAL 524
             +R+F     + K+      Y  M+      G + EA   Y  ++ M  +PD   + +L
Sbjct: 589 KAERVF-----ESKLSNELPLYNAMISAYALXGNVTEAVALYRSLEDMGXKPDSITFTSL 643

Query: 525 LGACKNHGNIELA 537
           L AC + G+I+ A
Sbjct: 644 LSACNHAGDIDQA 656



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 40/293 (13%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   L+ GK +        L     +A+  +  Y +C +I  A+ +FD   + ++  W  
Sbjct: 376 RTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNT 435

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L  AYA  G+  EA+ +F+EM ++ +  N  VI   L     L +    E     +   S
Sbjct: 436 LLAAYAESGHSGEALRLFYEMQLESVPPN--VITWNLIILSRLRNAEVNEAKEMFLQMQS 493

Query: 210 FGTDAFVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDI--------VAMNA--------- 250
            G    ++S  ++++   + G  E+A     +M E  +        VA++A         
Sbjct: 494 SGITPNLISWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHF 553

Query: 251 --MVSGYVQRGLATEA-----------------LNLVEEIGTPRVKPNVVTWNTLISGFS 291
              + GY+ R L   +                 +N  E +   ++   +  +N +IS ++
Sbjct: 554 GRSIHGYIIRNLRHSSSASIETSLVDMYAKCGDINKAERVFESKLSNELPLYNAMISAYA 613

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
             G+      L++ +   G +PD +++TS++S   H    D+A   F +M+S 
Sbjct: 614 LXGNVTEAVALYRSLEDMGXKPDSITFTSLLSACNHAGDIDQAIRVFTDMVSN 666



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 99/240 (41%), Gaps = 12/240 (5%)

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+L   +   P   S+   +S L  N    EA     EM  +           IL  C  
Sbjct: 12  FKLHDEQPQAPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVY 71

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVR-----SALVDMYAKCGFISEARTLFDKMSERNTV 417
             ++  GK+IH   +     GDL+ R     + LV  YAKC  +  A  LF K+  RN  
Sbjct: 72  ERDLCTGKQIHARILK---NGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVF 128

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
           +W ++I      G C+ A+  F +M E +   D+     V  AC  +     G+ +   +
Sbjct: 129 SWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYV 188

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIE 535
             K  +       + + D+ G+ G L +A ++   +  E ++  W AL+ G  +N  N E
Sbjct: 189 L-KAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIP-ERNVVAWNALMVGYVQNGMNEE 246


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 269/509 (52%), Gaps = 43/509 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL++G+ +H+  + +G A    I + LI  Y+ C ++  A+ +FD +   ++  + +L  
Sbjct: 56  ALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLIS 115

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A+ R G  + A     +M  QGLK N   + ++L AC  +     G++IH  ++K     
Sbjct: 116 AFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLR 171

Query: 213 DAFVVSS--LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
              V SS  LID YS+ G  + AK VFD +  K++V+  +M+  Y++ G   EAL +  +
Sbjct: 172 SQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGD 231

Query: 271 IGTPRVKPN--------------------------------VVTWNTLISGFSKSGDQVM 298
           + +  V PN                                +   N L+S + ++G   +
Sbjct: 232 MISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTG---L 288

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           V +L + M  K   PD+VSWT+ IS    N   ++A     +M S+GF P     SS+L 
Sbjct: 289 VEEL-EAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLS 347

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           +CA  A++ +G + H  A+ +G + ++   +AL++MY+KCG +  AR  FD M   +  +
Sbjct: 348 SCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTS 407

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I G A HG  ++A+E+F++M     K D  +F  VL  C H G+VE G+  F +M 
Sbjct: 408 WNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMI 467

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++Y   P   HYACM+D+LGR GR  EA  MI  M  EPD  +W  LL +CK H N+++ 
Sbjct: 468 DQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIG 527

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++AA  L EL    +A+ +L++++YA  G
Sbjct: 528 KLAADRLMELSDRDSASYVLMSNIYAMHG 556



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 218/450 (48%), Gaps = 45/450 (10%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +P+ N+  W ++   Y R G  + A+ +F +M   G+  N F   + L AC  L  +  G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           E++HSL ++  F  DA++ S LI+MYS+CGS+  AK+VFD M   D+V   +++S + + 
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 259 G---LATEALNLVEEIG--------------TPRV----------------KPNVVTWNT 285
           G   LA EAL  + + G               PRV                  +V +   
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTA 180

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
           LI  +S++G+  +   +F  +  K    +VVSW S++   + +   +EA   F +M+S+G
Sbjct: 181 LIDFYSRNGEFKLAKAVFDSLHCK----NVVSWCSMMQLYIRDGRLEEALQVFGDMISEG 236

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P    +S +L AC S      G+++H  AI   +  D+ V +AL+ MY + G + E  
Sbjct: 237 VDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELE 293

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVG 464
            + +K+   + V+W + I     +G+ ++AI L  QM  E    +  +F++VL++C  V 
Sbjct: 294 AMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVA 353

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
            ++ G + F+ +  K            ++++  + G++  A      M T  D+  W +L
Sbjct: 354 SLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTH-DVTSWNSL 411

Query: 525 LGACKNHGNIELA-EIAAKHLSE-LEPESA 552
           +     HG+   A E+ +K  S  ++P+ +
Sbjct: 412 IHGHAQHGDANKALEVFSKMRSNGIKPDDS 441


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 185/534 (34%), Positives = 281/534 (52%), Gaps = 41/534 (7%)

Query: 73  SFHLSPAAY---SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           S H +P  Y   S   +     R  Q+  I H   + S L   + + T L+  Y +   +
Sbjct: 125 SLHPTPHDYVLFSIVFKSCAESRDFQTLTITHCHFVKS-LPSDSFVLTCLVDAYAKFARV 183

Query: 130 HHARMLFDEIPKTN-IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
             A   FDEI + + +  W ++  AY +    +E +T+F+ M    +  N F + S++ A
Sbjct: 184 DEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSA 243

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE----MVEKD 244
           C  L+ +  G+ +H  V+K+    ++++ +SL++MY KCG+++ A KVFDE      ++D
Sbjct: 244 CTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRD 303

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +V+  AM+ GY QRG    AL L ++     + PN VT ++L+S  ++ G+ VM   L  
Sbjct: 304 LVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHG 363

Query: 305 L-----------------MRAK-GV------------EPDVVSWTSVISGLVHNFCNDEA 334
           L                 M AK GV            E DVVSW S+ISG V +    EA
Sbjct: 364 LAVKCGLDDHPVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEA 423

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVD 393
            + F+ M  + F P + T+  IL ACAS   +  G  +HG A+  G V   ++V +AL++
Sbjct: 424 LNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLN 483

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
            YAKCG    AR +FD M E+N VTW +MI G    G  + ++ LF  M EE  + + + 
Sbjct: 484 FYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVV 543

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           FT +L AC H G+V  G RLFN+M  +   +P  +HYACMVD+L RAG L EA + I+ M
Sbjct: 544 FTTILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERM 603

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             +P + V+GA L  C  H   EL   A K + EL P+ A   +L+++LYA+ G
Sbjct: 604 PVQPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNLYASDG 657



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 225/479 (46%), Gaps = 42/479 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L S K LHA  ++ GL     ++TKL++ Y     + HAR +F+ +P  +++ +  +  A
Sbjct: 46  LPSLKTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIRA 105

Query: 154 YARRGYHQEAVTVFHEMH--IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           Y         V+++  M   +     +  +   V K+C    D  T    H   +K S  
Sbjct: 106 YFLNDTPSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLTITHCHFVK-SLP 164

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNLVEE 270
           +D+FV++ L+D Y+K   V++A + FDE+ E  D+V+  +M+  YVQ   A E L L   
Sbjct: 165 SDSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNR 224

Query: 271 IGTPRVKPNVVTWNTLISG-----------------------------------FSKSGD 295
           +    V  N  T  +L+S                                    + K G+
Sbjct: 225 MREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGN 284

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                K+F    +   + D+VSWT++I G         A + FK+    G  P S T+SS
Sbjct: 285 IQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSS 344

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L +CA   N   GK +HG A+  G++ D  VR+ALVDMYAKCG +S+AR +F+ M E++
Sbjct: 345 LLSSCAQLGNSVMGKLLHGLAVKCGLD-DHPVRNALVDMYAKCGVVSDARCVFEAMLEKD 403

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
            V+WNS+I G    G   EA+ LF +M  E    D ++   +L+AC  +G++ LG  +  
Sbjct: 404 VVSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHG 463

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           +  +   ++        +++   + G  A A  M+     E +   WGA++G     G+
Sbjct: 464 LALKDGLVVSSIYVGTALLNFYAKCGD-ARAARMVFDSMGEKNAVTWGAMIGGYGMQGD 521


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/480 (32%), Positives = 263/480 (54%), Gaps = 58/480 (12%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  ++   +++ + +AT+++      + + HA  +F ++   N+H   A+  AYA+   
Sbjct: 33  VHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQ 92

Query: 160 HQEAVTVFHEM----------HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           H++AV V+  M          H  G +   F  P +LKACG  + +  G+++H+ V++  
Sbjct: 93  HRDAVAVYIRMLRCPTSPPDGHAGGDR---FTYPFLLKACGGTAALELGKQVHTHVVRSG 149

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             + A V +SLI+MY++ G +  A KVFDEM E+D                         
Sbjct: 150 CDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD------------------------- 184

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVISGLVH 327
                     VV+WN LIS  ++ G     + LF  M      PD  +V+WT+++SG   
Sbjct: 185 ----------VVSWNMLISAHARLGQMRKATALFNSM------PDKTIVTWTAMVSGYTT 228

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
                 A D F+ M ++GF P   +I ++LPACA    +  G+ I+      G+    H+
Sbjct: 229 VGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHI 288

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            +AL++MYAKCG I +A  LFD M++++ ++W+++I G A HG   EA+ LF +ME+  K
Sbjct: 289 CNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGK 348

Query: 448 L--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
           +  + ++F  +L+AC + GLV+ G   F+ M + Y + P  EHY C+VDLLGR+G++  A
Sbjct: 349 VRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRA 408

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            ++++ M    D  VWG+LL AC++HG+++ A +AA+ L ELEP+   N ++L ++YA A
Sbjct: 409 LDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAA 468



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 40/309 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIH---------------------- 130
           AL+ GK +H  ++ SG      +   LI  YT   ++                       
Sbjct: 134 ALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLIS 193

Query: 131 -HARM--------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            HAR+        LF+ +P   I  W A+   Y   G +  AV  F  M  +G + +   
Sbjct: 194 AHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVS 253

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           I +VL AC  L  +  G  I++   +H   T   + ++L++MY+KCG +++A ++FD M 
Sbjct: 254 IVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMA 313

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGFSKSG--DQVM 298
           +KD+++ + ++ G    G A EA+ L  E+    +V+PNV+T+  L+S  S +G  D+ +
Sbjct: 314 DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGL 373

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI-SSIL 357
            S   ++    GVEP V  +  V+  L  +     A D  ++M      P  A +  S+L
Sbjct: 374 -SHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMP----VPADAKVWGSLL 428

Query: 358 PACASAANM 366
            AC S  ++
Sbjct: 429 SACRSHGDV 437


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 283/547 (51%), Gaps = 46/547 (8%)

Query: 59  IFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLA-RLTQIAT 117
           +F E    + I S S+ +  +A+SE     + +   + G+ +HA +I +GL      I  
Sbjct: 370 VFHEMKDLVGINSDSYVVLLSAFSE---FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGN 426

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            L+  Y +   I  A  +F+ + + +   W +L     +    ++A   FH M   G   
Sbjct: 427 GLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMP 486

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           + F + S L +C  L  I  GE+IH   LK    TD  V ++L+ +Y++ G   +  KVF
Sbjct: 487 SNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVF 546

Query: 238 DEMVEKDIVAMNAMVSG--------------YVQ--RG-------------LATEALNLV 268
             M E D V+ N+++                ++Q  RG              A  +L+L 
Sbjct: 547 SLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLH 606

Query: 269 E---EIGTPRVK----PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           E   +I    +K     +    N L+S + K G+     K+F  M       D VSW S+
Sbjct: 607 EVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSET---RDEVSWNSM 663

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ISG +HN    +A D    M+ +G    S T ++IL ACAS A + RG E+H C I   +
Sbjct: 664 ISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACL 723

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E D+ V SALVDMY+KCG I  A   F+ M  RN  +WNSMI G A HG+ ++A++LF +
Sbjct: 724 ESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTR 783

Query: 442 ME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M  + +  DH++F  VL+AC HVG VE G   F  M E Y++ PR EH++CMVDLLGRAG
Sbjct: 784 MMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAG 843

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGAC--KNHGNIELAEIAAKHLSELEPESAANNMLL 558
           +L E  + I +M  +P++ +W  +LGAC   N  N EL   AA+ L ELEP++A N +LL
Sbjct: 844 KLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLL 903

Query: 559 TDLYANA 565
            ++YA+ 
Sbjct: 904 ANMYASG 910



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 220/461 (47%), Gaps = 53/461 (11%)

Query: 115 IATKLITFYTEC-QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           +   LI+ Y  C  + + AR +FD I   N   W ++   Y+RRG    A  +F  M  +
Sbjct: 211 VCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKE 270

Query: 174 GL----KQNIFVIPSVLKACGHLSDIG--TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227
           GL    K N +   S++       D G    E++ + V K  F  D +V S+L+  +++ 
Sbjct: 271 GLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARF 330

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR-----------------GLATEA------ 264
           G  + AK +F++M  +++V+MN ++ G V++                 G+ +++      
Sbjct: 331 GLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLS 390

Query: 265 ----LNLVEE------------IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
                +++EE            I T      V   N L++ ++KSG       +F+LM  
Sbjct: 391 AFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-- 448

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
             VE D VSW S+ISGL  N C+++A ++F  M   G  P++ T+ S L +CAS   +  
Sbjct: 449 --VEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIML 506

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           G++IH   + +G++ D+ V +AL+ +YA+ G  +E   +F  M E + V+WNS+I   ++
Sbjct: 507 GEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSD 566

Query: 429 -HGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
                 +A++ F QM      L  ++F  +L+A   + L E+  ++  ++  KY +   T
Sbjct: 567 SEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVL-KYCLSDDT 625

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
                ++   G+ G + E  ++   MS   D   W +++  
Sbjct: 626 AIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 666



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 132/561 (23%), Positives = 241/561 (42%), Gaps = 63/561 (11%)

Query: 14  PFQFTLSMNDFYSIRRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPI--IS 71
           P   T + + F  ++ + F  L+  Q    C+KS  D    L++      HYK      +
Sbjct: 19  PTFTTFTASPFPPLKSLLFKPLNPNQ----CTKSLQD----LVD------HYKTSTSHCN 64

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHH 131
            +   S   +   I  Y      +  + LH Q I  G      ++  LI  Y    ++  
Sbjct: 65  TTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGS 124

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A+ LFDE+   N+  W  L   Y + G   EA   F +M   G   N +   S L+AC  
Sbjct: 125 AQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQE 184

Query: 192 LSDIGT--GEKIHSLVLKHSFGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMVEKDIVAM 248
               G   G +IH L+ K  +G+D  V + LI MY  C  S   A+ VFD +  ++ ++ 
Sbjct: 185 SGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISW 244

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRV----KPNVVTWNTLISGFSKSGD--QVMVSKL 302
           N+++S Y +RG A  A +L   +    +    KPN  T+ +LI+    S D    ++ ++
Sbjct: 245 NSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQM 304

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
              +   G   D+   ++++SG       D+A + F++M  +     +  +  ++     
Sbjct: 305 LARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQG 364

Query: 363 AA----------------------------------NMRRGKEIHGCAIVMGV-EGDLHV 387
            A                                    R+G+E+H   I  G+ +  + +
Sbjct: 365 EAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAI 424

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
            + LV+MYAK G I++A ++F+ M E+++V+WNS+I G   +   ++A E F++M     
Sbjct: 425 GNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGS 484

Query: 448 L-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           +  + +  + L++C  +G + LG+++ +    K  +         ++ L    G   E  
Sbjct: 485 MPSNFTLISTLSSCASLGWIMLGEQI-HCDGLKLGLDTDVSVSNALLALYAETGCFTECL 543

Query: 507 EMIKTMSTEPDLFVWGALLGA 527
           ++   M  E D   W +++GA
Sbjct: 544 KVFSLM-PEYDQVSWNSVIGA 563



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 54/392 (13%)

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
             ++H   +K+ F  + F+ ++LI++Y + G +  A+K+FDEM  +++V    ++SGY Q
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149

Query: 258 RGLATEA----------------------LNLVEE---------------IGTPRVKPNV 280
            G   EA                      L   +E               I   R   +V
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 209

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           V  N LIS +    D    ++   +    G+  + +SW S+IS          A+D F  
Sbjct: 210 VVCNVLISMYGSCLDSANDAR--SVFDGIGIR-NSISWNSIISVYSRRGDAVSAYDLFSS 266

Query: 341 MLSQG----FCPTSATISSILPACASAANMRRGKEIHGCAIV--MGVEGDLHVRSALVDM 394
           M  +G    F P   T  S++    S+ +          A V   G   DL+V SALV  
Sbjct: 267 MQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSG 326

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT 454
           +A+ G   +A+ +F++M  RN V+ N ++ G       + A ++F++M++   ++  S+ 
Sbjct: 327 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYV 386

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIK 510
            +L+A     ++E G+R    +          ++       +V++  ++G +A+A  + +
Sbjct: 387 VLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE 446

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            M  E D   W +L+     +   E +E AA+
Sbjct: 447 LM-VEKDSVSWNSLISGLDQN---ECSEDAAE 474



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 17/273 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA  I + L     + + L+  Y++C  I +A   F+ +P  N++ W ++   
Sbjct: 708 LERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISG 767

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGT 212
           YAR G+ ++A+ +F  M + G   +      VL AC H+  +  G E   S+   +    
Sbjct: 768 YARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSP 827

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR--GLATEALNLVEE 270
                S ++D+  + G +++     + M  K  V +   V G   R  G  TE      E
Sbjct: 828 RVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAE 887

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNF 329
           +       N V +  L + ++       V+K    M+   V+ +   SW ++  G VH F
Sbjct: 888 MLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDG-VHVF 946

Query: 330 C--------NDEAFDTFKE----MLSQGFCPTS 350
                     D  +D  +E    M   G+ P +
Sbjct: 947 VAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQT 979


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/506 (31%), Positives = 275/506 (54%), Gaps = 32/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK LH+  + S       + T  +  Y +C  +  A+ +   +PK ++  + A+  
Sbjct: 297 ALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIV 356

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YAR     +A+  F  +   GL  +   +   L AC  +     G ++H L +K    +
Sbjct: 357 GYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMS 416

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++++DMY KC ++ +A  +FD M  +D V+ NA+++   Q G   E L     + 
Sbjct: 417 NICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMI 476

Query: 273 TPRVKPNVVTWNTLISGFS----------------KSG---DQVMVSKLFQLMRAKGV-- 311
             R++P+  T+ +++   +                KSG   D  + + L  +    G+  
Sbjct: 477 HSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIE 536

Query: 312 ----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                     +  +VSW ++ISG      +++A   F  ML  G  P + T +++L  CA
Sbjct: 537 KADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCA 596

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A +  GK+IH   I   ++ D+++ S LVDMY+KCG + +++ +F+K   R+ VTWN+
Sbjct: 597 NLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNA 656

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+ G A+HG  +EA++LF  M+    K +H +F +VL AC H+GLV+ G   F++M  +Y
Sbjct: 657 MLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEY 716

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            + P++EHY+CMVD+LGR+GR+ EA  +++ M  E D  +W  LL  CK HGN+E+AE A
Sbjct: 717 GLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKA 776

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
            + L +L+P+ ++  +LL+++YA+AG
Sbjct: 777 TRALLQLDPQDSSACVLLSNIYADAG 802



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/490 (25%), Positives = 222/490 (45%), Gaps = 49/490 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +H  ++  G        + L+  Y +C+ +  +  +F E+P+ N   W A+     +
Sbjct: 200 GVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQ 259

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              + E + +F EM   G+  +  +  S+ ++C  LS +  G+++HS  LK +FG+D  V
Sbjct: 260 NDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIV 319

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN-----LVEEI 271
            ++ +DMY+KCG +  A+KV   M +  + + NA++ GY +     +AL      L   +
Sbjct: 320 GTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGL 379

Query: 272 GTPRVK------------------------------PNVVTWNTLISGFSKSGDQVMVSK 301
           G   +                                N+   N ++  + K       S 
Sbjct: 380 GFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASD 439

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF +M  +    D VSW ++I+    N   +E    F  M+     P   T  S+L ACA
Sbjct: 440 LFDMMERR----DAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACA 495

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
               +  G EIH   I  G+  D  V +ALVDMY KCG I +A  + D+  ++  V+WN+
Sbjct: 496 GRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNA 555

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G +     ++A + F++M E     D+ ++ AVL  C ++  V LG+++   +    
Sbjct: 556 IISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQI---I 612

Query: 481 KIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
           K   +++ Y C  +VD+  + G + ++  M +  +   D   W A+L    +HG   L E
Sbjct: 613 KQELQSDVYICSTLVDMYSKCGNMQDSQLMFEK-APNRDFVTWNAMLCGYAHHG---LGE 668

Query: 539 IAAKHLSELE 548
            A K    ++
Sbjct: 669 EALKLFESMQ 678



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 225/518 (43%), Gaps = 74/518 (14%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+ Y  C  +  AR  F E+P+ ++  W ++   + + G  ++++ VF EM   G+  +
Sbjct: 121 IISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFD 180

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              +  VLKACG L +   G ++H LV+K  F  D    S+L+ MY+KC  ++ +  VF 
Sbjct: 181 RASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFS 240

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-----IGTPR------------------ 275
           E+ EK+ V+ +AM++G VQ     E L L +E     +G  +                  
Sbjct: 241 ELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRL 300

Query: 276 ------------VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
                          +++     +  ++K G      K+   M    ++    S+ ++I 
Sbjct: 301 GKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQ----SYNAIIV 356

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G   +    +A  +F+ +L  G      T+S  L ACAS      G+++HG A+      
Sbjct: 357 GYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMS 416

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM- 442
           ++ V +A++DMY KC  ++EA  LFD M  R+ V+WN++I  C  +G  +E +  F  M 
Sbjct: 417 NICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMI 476

Query: 443 EERKKLDHLSFTAVLTACC-----------HVGLVELGQRL--------------FNMMQ 477
             R + D  ++ +VL AC            H  +++ G                   M++
Sbjct: 477 HSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIE 536

Query: 478 EKYKIMPRTEHYACM--------VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
           +  KI  RTE    +          LL ++    + +  +  M   PD F + A+L  C 
Sbjct: 537 KADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCA 596

Query: 530 NHGNIELA-EIAAKHLSELEPESAANNMLLTDLYANAG 566
           N   + L  +I A+ + +           L D+Y+  G
Sbjct: 597 NLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCG 634



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 183/372 (49%), Gaps = 36/372 (9%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    +S+I  Y+ CG ++ A+K F EM E+D+V+ N+++SG++Q G   +++++  E+G
Sbjct: 114 DVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMG 173

Query: 273 TPRVKPNV-------------------VTWNTLISGFSKSGDQV-------MVSKLFQLM 306
              V  +                    V  + L+  F    D V       M +K  +L 
Sbjct: 174 RCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLD 233

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            +  V     E + VSW+++I+G V N  N E  + FKEM   G   + +  +S+  +CA
Sbjct: 234 DSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCA 293

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + + +R GKE+H  A+      D+ V +A +DMYAKCG +++A+ +   M + +  ++N+
Sbjct: 294 ALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNA 353

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +I G A      +A++ F  + +     D ++ +  L AC  +   +L  R  + +  K 
Sbjct: 354 IIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASI-RGDLEGRQVHGLAVKS 412

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE--LAE 538
             M        ++D+ G+   LAEA ++   M    D   W A++ AC+ +GN E  LA 
Sbjct: 413 ISMSNICVANAILDMYGKCKALAEASDLFDMMERR-DAVSWNAIIAACEQNGNEEETLAH 471

Query: 539 IAAKHLSELEPE 550
            A+   S +EP+
Sbjct: 472 FASMIHSRMEPD 483



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 162/332 (48%), Gaps = 47/332 (14%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           + + C   + +  G++ H+ ++   F    FV + L+ MY KC  ++ A KVFD+M  +D
Sbjct: 55  IYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRD 114

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
                                              VV++N++ISG++  G+  +  K F 
Sbjct: 115 -----------------------------------VVSYNSIISGYASCGEMDIARKFFY 139

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M     E DVVSW SVISG + N    ++ D F EM   G     A+++ +L AC +  
Sbjct: 140 EMP----ERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALE 195

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
               G ++HG  +  G + D+   SAL+ MYAKC  + ++ ++F ++ E+N V+W++MI 
Sbjct: 196 ECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIA 255

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN-MMQEKY-- 480
           GC  +    E +ELF +M+     +    + ++  +C  +  + LG+ L +  ++  +  
Sbjct: 256 GCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGS 315

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
            I+  T      +D+  + GR+A+A +++ +M
Sbjct: 316 DIIVGTA----TLDMYAKCGRMADAQKVLSSM 343



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 168/340 (49%), Gaps = 22/340 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL +G  +H ++I SG+   + +   L+  Y +C  I  A  + D   +  +  W A+ 
Sbjct: 498 QALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAII 557

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             ++     ++A   F  M   G+  + F   +VL  C +L+ +G G++IH+ ++K    
Sbjct: 558 SGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQ 617

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D ++ S+L+DMYSKCG+++ ++ +F++   +D V  NAM+ GY   GL  EAL L E +
Sbjct: 618 SDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESM 677

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSK---LFQLMRAK-GVEPDVVSWTSVISGLVH 327
               VKPN  T+ +++   +  G   +V K    F +M ++ G++P    ++ ++  L  
Sbjct: 678 QLVNVKPNHATFVSVLRACAHMG---LVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGR 734

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           +   DEA +  ++M    F   +    ++L  C    N+    E+   A    ++ D   
Sbjct: 735 SGRIDEALNLVQKM---PFEADAVIWRNLLSVCKIHGNV----EVAEKATRALLQLDPQD 787

Query: 388 RSALV---DMYAKCGF---ISEARTLF--DKMSERNTVTW 419
            SA V   ++YA  G    +SE R +   +K+ +    +W
Sbjct: 788 SSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSW 827


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/489 (32%), Positives = 266/489 (54%), Gaps = 35/489 (7%)

Query: 112 LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH 171
           LT + T LI  Y +  +   A  LFDE+P  ++  W ++   Y    +H  A  VF  M 
Sbjct: 40  LTGLTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNML 99

Query: 172 IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSK-CGS 229
             G+K N F + +VLKAC  L  +  G+ +H L +K  + G+  +V ++L+DMY+  C S
Sbjct: 100 RDGVKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDS 159

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS- 288
           ++ A+ VF+++  K+ V+   +++GY  R  A   L +  ++     + +  +++  +S 
Sbjct: 160 MDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSA 219

Query: 289 ----GFSKSGDQVMVSKL-------FQLMRA-------------------KGVEPDVVSW 318
               G S  G QV  + +         +M A                   +  + D ++W
Sbjct: 220 CASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITW 279

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
            ++I+G      + E+   F +M+S+GF P   T +S++ ACA+ A +  G+++HG  I 
Sbjct: 280 NTLIAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIH 338

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
            G++ +L + +AL+DMYAKCG ++++  +F  M   N V+W SM+ G   HG+  EA++L
Sbjct: 339 RGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDL 398

Query: 439 FNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           FN+M     K D + F AVL+AC H GLV+ G R F +M   Y + P  + YAC+VDLL 
Sbjct: 399 FNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLS 458

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           RAGR+ EAYE+I+ M  +PD  +W ALLGACK +    + ++AA  + E++P  A   +L
Sbjct: 459 RAGRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVL 518

Query: 558 LTDLYANAG 566
           L++  A  G
Sbjct: 519 LSNFSAAEG 527



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 168/377 (44%), Gaps = 44/377 (11%)

Query: 92  RALQSGKILHAQLIVSGL-ARLTQIATKLITFY-TECQNIHHARMLFDEIPKTNIHRWIA 149
           +AL  GK++H   I  G       +   L+  Y T C ++ +AR++F++I   N   W  
Sbjct: 121 KALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTKNAVSWTT 180

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   Y  R      + VF +M ++  + + F     + AC  +     G+++H+ V+ H 
Sbjct: 181 LITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVINHG 240

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           F ++  V+++++DMY +C    +AK++F EM +KD +  N +++G+ +   + E+L +  
Sbjct: 241 FESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGF-ETLDSYESLCIFS 299

Query: 270 EIGTPRVKPNVVTW-----------------------------------NTLISGFSKSG 294
           ++ +    PN  T+                                   N LI  ++K G
Sbjct: 300 QMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCG 359

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           +     K+F  MR      ++VSWTS++ G   +    EA D F EM+  G  P      
Sbjct: 360 NVADSHKIFSGMR----HTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFM 415

Query: 355 SILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS- 412
           ++L AC+ A  +  G +          V  D  + + +VD+ ++ G + EA  L + M  
Sbjct: 416 AVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPF 475

Query: 413 ERNTVTWNSMIFGCANH 429
           + +   W +++  C  +
Sbjct: 476 KPDESIWVALLGACKKY 492



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 5/286 (1%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LSP ++S  +       +   GK +HA +I  G      +   ++  Y  C+    A+ L
Sbjct: 208 LSPFSFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQL 267

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           F E+ + +   W  L   +     + E++ +F +M  +G   N F   SV+ AC +L+ +
Sbjct: 268 FGEMTQKDTITWNTLIAGFETLDSY-ESLCIFSQMVSEGFSPNCFTFTSVIAACANLAIL 326

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G+++H  ++      +  + ++LIDMY+KCG+V  + K+F  M   ++V+  +M+ GY
Sbjct: 327 YCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGY 386

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA-KGVEPD 314
              G   EA++L  E+    +KP+ + +  ++S  S +G      + F+LM +   V PD
Sbjct: 387 GAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPD 446

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
              +  V+  L       EA++  + M    F P  +   ++L AC
Sbjct: 447 RDIYACVVDLLSRAGRVKEAYELIENM---PFKPDESIWVALLGAC 489


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/478 (32%), Positives = 250/478 (52%), Gaps = 42/478 (8%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R + +  G++ H Q++  G      I   LI  Y     + +A+ +FD++   ++  W +
Sbjct: 169 RVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNS 228

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   Y++    +E + +F+ M    +  +   +  V+ AC +L + G  + +   +    
Sbjct: 229 LICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKH 288

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D ++ +SLIDMY + G V+ A++VFD M EK                          
Sbjct: 289 VDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEK-------------------------- 322

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH-N 328
                    N+V+WN +++G++ +GD V   KLF  M  +    +V+SWT +ISG    N
Sbjct: 323 ---------NIVSWNAMLTGYATAGDLVAAKKLFNEMPIR----NVISWTCMISGCAQAN 369

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
            C+D A   F+EM+     P   T+SS+L AC+    +  G+ +H       ++ D++V 
Sbjct: 370 QCSD-ALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVG 428

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           +AL+DMY KCG + +A  +F  M ++++V+W SMI G A +G+ D   ELF+QM  +  +
Sbjct: 429 NALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQ 488

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
             H SF  +L AC H GLV+ G   F  M+  Y + P  +HY C+VDLL R+G L  AYE
Sbjct: 489 PTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYE 548

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            IK M   PD+ +W  LL ACK H N+ LAEIA   L EL+P ++ N +LL++ YA +
Sbjct: 549 FIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGS 606


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 275/483 (56%), Gaps = 52/483 (10%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQ--NIHHARMLFDEIPKTNIHRWIALTG 152
           Q  +IL +Q+I++G    T  A++L+ F T+     + ++  +FD I  +N   W  +  
Sbjct: 44  QFNRIL-SQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMR 102

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG-HLSDIGTGEKIHSLVLKHSFG 211
           AY +    ++A+ ++  M    +  + +  P V++AC   L + G G++IH  VLK  F 
Sbjct: 103 AYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFG-GKEIHDHVLKVGFD 161

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D +V ++LI+MY+ CG++  A+K+FDE                                
Sbjct: 162 SDVYVQNTLINMYAVCGNMRDARKLFDE-------------------------------- 189

Query: 272 GTPRVKPNVVTWNTLISGFSKSGD--QVMVS-KLFQLMRAKGVEPDVVSWTSVISGLVHN 328
            +P +  + V+WN++++G+ K GD  QVM + KLF  M     E D+VSW+++ISG   N
Sbjct: 190 -SPVL--DSVSWNSILAGYVKKGDMGQVMEAWKLFNEMD----EKDMVSWSALISGYEQN 242

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
              +EA   F EM + G       + S+L ACA  + ++ GK IHG  I MG+E  ++++
Sbjct: 243 GMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQ 302

Query: 389 SALV----DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           +AL+    DMY KCG +  A  +F+ M E+   +WN++I G A +G  + ++++F++M+ 
Sbjct: 303 NALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKN 362

Query: 445 RKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              + + ++F  VL AC H+GLV+ G+  F  M EK+ I P  +HY CMVDLLGRAG L 
Sbjct: 363 NGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLN 422

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA ++I++M   PD+  WGALLGACK HG+ E+ E   + L EL+P+    ++LL++++A
Sbjct: 423 EAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFA 482

Query: 564 NAG 566
           + G
Sbjct: 483 SKG 485



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 176/408 (43%), Gaps = 63/408 (15%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP---------------- 140
           GK +H  ++  G      +   LI  Y  C N+  AR LFDE P                
Sbjct: 148 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVK 207

Query: 141 ------------------KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
                             + ++  W AL   Y + G ++EA+ +F EM+  G++ +  V+
Sbjct: 208 KGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVV 267

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI----DMYSKCGSVEKAKKVFD 238
            SVL AC HLS + TG+ IH LV++    +   + ++LI    DMY KCG VE A +VF+
Sbjct: 268 VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFN 327

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M EK + + NA++ G    GL   +L++  E+    V PN +T+  ++      G   +
Sbjct: 328 GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMG---L 384

Query: 299 VSK----LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           V +       ++   G+EP+V  +  ++  L      +EA    + M      P  AT  
Sbjct: 385 VDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESM---PMAPDVATWG 441

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSE 413
           ++L AC    +   G+ +    I +  + D  HV   L +++A  G   +   +   M +
Sbjct: 442 ALLGACKKHGDTEMGERVGRKLIELQPDHDGFHV--LLSNIFASKGDWEDVLEVRGMMKQ 499

Query: 414 RNTV------------TWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
           +  V              +  + G   H + ++   + N+M +R K++
Sbjct: 500 QGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKME 547



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 111/244 (45%), Gaps = 11/244 (4%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTE----CQNIHHARMLFDEIPKTNIHRWIA 149
           +++GK++H  +I  G+     +   LI  Y++    C  + +A  +F+ + +  +  W A
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNA 339

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKH 208
           L    A  G  + ++ +F EM   G+  N      VL AC H+  +  G     S++ KH
Sbjct: 340 LIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKH 399

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               +      ++D+  + G + +A+K+ + M     VA    + G  ++   TE   + 
Sbjct: 400 GIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE---MG 456

Query: 269 EEIGTP--RVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
           E +G     ++P+   ++ L+S  F+  GD   V ++  +M+ +GV           +G+
Sbjct: 457 ERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGV 516

Query: 326 VHNF 329
           VH F
Sbjct: 517 VHEF 520


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 164/505 (32%), Positives = 275/505 (54%), Gaps = 34/505 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R LQ    +H  ++ +GL +   ++  LI  Y +C N+  AR+LFD+    ++  W ++ 
Sbjct: 216 RGLQ----VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA  G   EA+ +F+ M +  ++ +     S++K C +L ++   E++H  V+K+ F 
Sbjct: 272 SGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFV 331

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            D  + ++L+  YSKC ++  A ++F E     ++V+  AM+SG++Q     EA+ L  E
Sbjct: 332 FDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSE 391

Query: 271 IGTPRVKPNVVTWNTLISGF-----SKSGDQVMVS-----------------KLFQLMRA 308
           +    V+PN  T++ +++       S+   QV+ +                 KL ++  A
Sbjct: 392 MKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEA 451

Query: 309 KGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA-S 362
             V       D+V+W+++++G       + A   F E+   G  P   T SSIL  CA +
Sbjct: 452 AKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAAT 511

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A+M +GK+ HG AI   ++  L V SAL+ MYAK G I  A  +F +  E++ V+WNSM
Sbjct: 512 TASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSM 571

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A HG   +A+++F +M++RK K+D ++F  V  AC H GLVE G++ F++M    K
Sbjct: 572 ISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK 631

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  EH +CMVDL  RAG+L +A ++I  M       +W  +L AC+ H   EL  +AA
Sbjct: 632 IAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAA 691

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           + +  + PE +A  +LL+++YA +G
Sbjct: 692 EKIIAMIPEDSAAYVLLSNMYAESG 716



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 216/470 (45%), Gaps = 40/470 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ LH Q I  G      + T L+  Y +  N    R +FDE+ + N+  W  L   YAR
Sbjct: 116 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYAR 175

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              ++E +T+F  M  +G + N F   + L         G G ++H++V+K+       V
Sbjct: 176 NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 235

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----------- 265
            +SLI++Y KCG+V KA+ +FD+   K +V  N+M+SGY   GL  EAL           
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 266 ---------------NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK------LFQ 304
                          NL E   T ++  +VV +  +     ++   V  SK        +
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           L +  G   +VVSWT++ISG + N   +EA   F EM  +G  P   T S IL A    +
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVIS 415

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
                 E+H   +    E    V +AL+D Y K G + EA  +F  +  ++ V W++M+ 
Sbjct: 416 ----PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLA 471

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQ-RLFNMMQEKYKI 482
           G A  G  + AI++F+++ +   K +  +F+++L  C       +GQ + F+    K ++
Sbjct: 472 GYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAAT-TASMGQGKQFHGFAIKSRL 530

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                  + ++ +  + G +  A E+ K    E DL  W +++     HG
Sbjct: 531 DSSLCVSSALLTMYAKKGHIESAEEVFKRQR-EKDLVSWNSMISGYAQHG 579



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 205/456 (44%), Gaps = 50/456 (10%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +++A  LFD+ P  +   + +L   ++R G  QEA  +F  +   G++ +  +  SVLK 
Sbjct: 47  LYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKV 106

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
              L D   G ++H   +K  F  D  V +SL+D Y K  + +  + VFDEM E+++V  
Sbjct: 107 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTW 166

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------- 283
             ++SGY +  L  E L L   +     +PN  T+                         
Sbjct: 167 TTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 226

Query: 284 ----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                     N+LI+ + K G+      LF     K     VV+W S+ISG   N  + E
Sbjct: 227 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS----VVTWNSMISGYAANGLDLE 282

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   F  M       + ++ +SI+  CA+   +R  +++H   +  G   D ++R+AL+ 
Sbjct: 283 ALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMV 342

Query: 394 MYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
            Y+KC  + +A  LF +     N V+W +MI G   +   +EA+ LF++M+ +  + +  
Sbjct: 343 AYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEF 402

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +++ +LTA   +   E+  ++     E+   +        ++D   + G++ EA ++   
Sbjct: 403 TYSVILTALPVISPSEVHAQVVKTNYERSSTVG-----TALLDAYVKLGKVDEAAKVFSG 457

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           +  + D+  W A+L      G     E A K  SEL
Sbjct: 458 IDNK-DIVAWSAMLAGYAQAGE---TEAAIKIFSEL 489



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 190/415 (45%), Gaps = 52/415 (12%)

Query: 57  NGIFIEA---HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLT 113
           NG+ +EA    Y M +      LS ++++  I++    + L+  + LH  ++  G     
Sbjct: 277 NGLDLEALGMFYSMRL--NHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQ 334

Query: 114 QIATKLITFYTECQNIHHARMLFDEIP-KTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
            I T L+  Y++C  +  A  LF E     N+  W A+   + +    +EAV +F EM  
Sbjct: 335 NIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKR 394

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
           +G++ N F    +L A   +S      ++H+ V+K ++   + V ++L+D Y K G V++
Sbjct: 395 KGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDE 450

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS---- 288
           A KVF  +  KDIVA +AM++GY Q G    A+ +  E+    VKPN  T++++++    
Sbjct: 451 AAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAA 510

Query: 289 ------------GF---SKSGDQVMVSKLFQLMRAKG-------------VEPDVVSWTS 320
                       GF   S+    + VS     M AK               E D+VSW S
Sbjct: 511 TTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNS 570

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-----IHGC 375
           +ISG   +    +A D FKEM  +     S T   +  AC  A  +  G++     +  C
Sbjct: 571 MISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 630

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANH 429
            I    E +    S +VD+Y++ G + +A  + D M     +  W +++  C  H
Sbjct: 631 KIAPTKEHN----SCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVH 681



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 6/233 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ++  GK  H   I S L     +++ L+T Y +  +I  A  +F    + ++  W ++  
Sbjct: 514 SMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMIS 573

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFG 211
            YA+ G   +A+ VF EM  + +K +      V  AC H   +  GEK   ++++     
Sbjct: 574 GYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIA 633

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
                 S ++D+YS+ G +EKA KV D M  +    +    + +  V +   TE   L  
Sbjct: 634 PTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHK--KTELGRLAA 691

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSV 321
           E     +  +   +  L + +++SGD    +K+ +LM  + V+ +   SW  V
Sbjct: 692 EKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 744


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/511 (31%), Positives = 265/511 (51%), Gaps = 47/511 (9%)

Query: 58  GIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIAT 117
           G+ +E H K         L    Y+  +    R  +L  GK LHA++I S       +A+
Sbjct: 246 GLVVEMHRK------GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 299

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            LI  Y +C +   A+ +F+ +   N   W  L G   +     ++V +F++M  + +  
Sbjct: 300 ALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 359

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           + F + +++  C +  D+  G ++HSL LK        V +SLI +Y+KCG ++ A+ VF
Sbjct: 360 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 419

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
             M E+DIV                                   +W ++I+ +S+ G+ +
Sbjct: 420 SSMSERDIV-----------------------------------SWTSMITAYSQIGNII 444

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSI 356
              + F  M  +    + ++W +++   + +   ++    +  MLSQ    P   T  ++
Sbjct: 445 KAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 500

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
              CA     + G +I G  +  G+  ++ V +A + MY+KCG ISEA+ LFD ++ ++ 
Sbjct: 501 FRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDV 560

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN+MI G + HG   +A + F+ M  +  K D++S+ AVL+ C H GLV+ G+  F+M
Sbjct: 561 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 620

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M   + I P  EH++CMVDLLGRAG L EA ++I  M  +P   VWGALL ACK HGN E
Sbjct: 621 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 680

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           LAE+AAKH+ EL+   + + MLL  +Y++AG
Sbjct: 681 LAELAAKHVFELDSPDSGSYMLLAKIYSDAG 711



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 205/454 (45%), Gaps = 57/454 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD-EIPKTNIHRWIALT 151
           AL   + LH +L+  GLA    +   L+  Y  C  +  AR L   +I + N+     + 
Sbjct: 35  ALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMM 94

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK------ACGHLSDIGTGEKIHSLV 205
             YA++G   +A  +F  M  + +     ++    +      +CG L       ++  L 
Sbjct: 95  NGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLF 154

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
            K  F  D  V ++L+DM+ +CG V+ A ++F ++    I   N+M++GY +      A+
Sbjct: 155 WKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAI 214

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
              E++     + +VV+WN +I+  S+SG       L   M  KGV  D           
Sbjct: 215 EYFEDMA----ERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLD----------- 259

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
                                   S T +S L ACA   ++  GK++H   I    + D 
Sbjct: 260 ------------------------STTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 295

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-E 444
           +V SAL+++YAKCG   EA+ +F+ + +RN+V+W  +I G   +    +++ELFNQM  E
Sbjct: 296 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 355

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMM----QEKYKIMPRTEHYACMVDLLGRAG 500
              +D  +   +++ C +   + LG++L ++       +  ++  +     ++ L  + G
Sbjct: 356 LMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS-----LISLYAKCG 410

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            L  A  +  +MS E D+  W +++ A    GNI
Sbjct: 411 DLQNAEFVFSSMS-ERDIVSWTSMITAYSQIGNI 443



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 150/380 (39%), Gaps = 101/380 (26%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           +   L++CG    +     +H  ++     +  F+ ++L+  Y  CG++  A+++    +
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           ++                                  PNV+T N +++G++K G      +
Sbjct: 83  KE----------------------------------PNVITHNIMMNGYAKQGSLSDAEE 108

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF  M  +    DV SW +++S            DT +        P  + +S     C 
Sbjct: 109 LFDRMPRR----DVASWNTLMS------------DTSR--------PAGSWMS-----CG 139

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL-------------- 407
           +        ++ G        GD  V +ALVDM+ +CG++  A  L              
Sbjct: 140 ALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNS 199

Query: 408 -----------------FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
                            F+ M+ER+ V+WN MI   +  G   EA+ L  +M  +  +LD
Sbjct: 200 MLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLD 259

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAYE 507
             ++T+ LTAC  +  +  G++L     +  + +P+ + Y  + +++L  + G   EA  
Sbjct: 260 STTYTSSLTACARLFSLGWGKQLH---AKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 508 MIKTMSTEPDLFVWGALLGA 527
           +  ++  + +   W  L+G 
Sbjct: 317 VFNSLQ-DRNSVSWTVLIGG 335



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 11/243 (4%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +    + +GL     +A   IT Y++C  I  A+ LFD +   ++  W A+   Y++
Sbjct: 513 GDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQ 572

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAF 215
            G  ++A   F +M  +G K +     +VL  C H   +  G+    ++ + H       
Sbjct: 573 HGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 632

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM-NAMVSGYVQRG---LATEALNLVEEI 271
             S ++D+  + G + +AK + D+M  K    +  A++S     G   LA  A   V E+
Sbjct: 633 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 692

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFC 330
            +P     ++    + S   KS D   V K   LMR KG++ +   SW  V    VH F 
Sbjct: 693 DSPDSGSYMLL-AKIYSDAGKSDDSAQVRK---LMRDKGIKKNPGYSWMEV-ENKVHVFK 747

Query: 331 NDE 333
            D+
Sbjct: 748 ADD 750



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 17/196 (8%)

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
            +  ++  L +C S   +   + +HG  + +G+   + +++ L+  Y  CG +S+AR L 
Sbjct: 19  VTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLL 78

Query: 409 D-KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLT--------- 458
              + E N +T N M+ G A  G   +A ELF++M  R   D  S+  +++         
Sbjct: 79  RADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRR---DVASWNTLMSDTSRPAGSW 135

Query: 459 -ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            +C  +G  EL  +L  +   K+      +    +VD+  R G +  A  +   +   P 
Sbjct: 136 MSCGALGCRELAPQLLGLFW-KFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE-RPT 193

Query: 518 LFVWGALL-GACKNHG 532
           +F   ++L G  K +G
Sbjct: 194 IFCRNSMLAGYAKLYG 209


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 281/546 (51%), Gaps = 41/546 (7%)

Query: 57  NGIFIEA-HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQI 115
           NG+F+EA      + S  F ++       +++      L  G+ LHA L+  G     Q 
Sbjct: 243 NGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQ- 301

Query: 116 ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175
              L+  Y  C  +  A  +F EI   +   W ++   Y +   + EA+  F EM   G 
Sbjct: 302 CNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGF 361

Query: 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
             +   I S+L A GHL  +  G ++H+  +K    +D  + ++L+DMY KC SVE + +
Sbjct: 362 NPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSAR 421

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEAL------------------------------ 265
           VFD M  KD V+   +++ Y Q    +EA+                              
Sbjct: 422 VFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKS 481

Query: 266 -NLVEEIGTPRVKP---NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
            +L++++ +  ++    +++  N +I  + + G+      +F+++  K    D+V+WTS+
Sbjct: 482 ISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKK----DIVTWTSM 537

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ++    N    EA   F +ML+ G  P S  +  IL A A  +++ +GKEIHG  I    
Sbjct: 538 VNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKF 597

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             +  V S+LVDMY+ CG ++ A  +FD+   ++ V W +MI     HG+  +AI +F +
Sbjct: 598 PVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKR 657

Query: 442 M-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M E     DH+SF A+L AC H  LV+ G+   +MM  KYK+ P  EHYAC+VDLLGR+G
Sbjct: 658 MLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSG 717

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
           +  EAY+ IK+M  EP   VW ALLGAC+ H N ELA IA   L ELEP++  N +L+++
Sbjct: 718 QTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSN 777

Query: 561 LYANAG 566
           ++A  G
Sbjct: 778 VFAEMG 783



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 239/520 (45%), Gaps = 56/520 (10%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ---IATKLITFYTECQNIHHARMLFD 137
           Y   +++    RA+  G+ LHA  + +G         +ATKL+  Y +C  +  A  LFD
Sbjct: 58  YGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFD 117

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH----IQGLKQNIFVIPSVLKACGHLS 193
            +P   +  W AL GA    G   EAV V+  M     + G   +   + SVLKACG   
Sbjct: 118 GMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG 177

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMV 252
           D   G ++H L +K        V ++L+ MY+KCG ++ A +VF+ M + +D+ + N+ +
Sbjct: 178 DGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAI 237

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVT------------------------------ 282
           SG VQ G+  EAL+L   + +     N  T                              
Sbjct: 238 SGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTE 297

Query: 283 ----WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
                N L+  +++ G    V    ++ R  G + D +SW S++S  V N    EA D F
Sbjct: 298 FNIQCNALLVMYARCG---WVDSALRVFREIG-DKDYISWNSMLSCYVQNRLYAEAIDFF 353

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
            EM+  GF P  A I S+L A      +  G+E+H  A+   ++ DL + + L+DMY KC
Sbjct: 354 GEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKC 413

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
             +  +  +FD+M  ++ V+W ++I   A      EAI  F   + E  K+D +   ++L
Sbjct: 414 YSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSIL 473

Query: 458 TACCHVGLVELGQRL--FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
            AC  +  + L +++  + +      ++ +      ++D+ G  G +  A  + + M  +
Sbjct: 474 EACSGLKSISLLKQVHSYAIRNGLLDLILKNR----IIDIYGECGEVCYALNIFE-MLDK 528

Query: 516 PDLFVWGALLGACKNHGNI-ELAEIAAKHLSE-LEPESAA 553
            D+  W +++     +G + E   +  K L+  ++P+S A
Sbjct: 529 KDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVA 568


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/506 (31%), Positives = 266/506 (52%), Gaps = 32/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + G  LHA  + +       + T  +  Y +C  +  AR +F+  P        AL  
Sbjct: 286 AFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIV 345

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YAR+    EA+ +F  +    L  +   +   L AC  +     G ++H L +K     
Sbjct: 346 GYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDF 405

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++++DMY+KCG++ +A  +FD+M  KD V+ NA+++ + Q     E L L   + 
Sbjct: 406 NICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSML 465

Query: 273 TPRVKPNVVTWNTLISG--------------------------FSKSGDQVMVSKLFQLM 306
              ++P+  T+ +++                            F  S    M  K   L+
Sbjct: 466 RSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLV 525

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            A+ +     E   VSW S+ISG       + A   F  ML  G  P + T +++L  CA
Sbjct: 526 EAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICA 585

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A +  GK+IHG  + + +  D+++ S +VDMY+KCG + ++R +F+K  +R+ VTW++
Sbjct: 586 NLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSA 645

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI   A HG  ++AI+LF +M+ +  K +H  F +VL AC H+G V+ G   F  M+  Y
Sbjct: 646 MICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHY 705

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            + P+ EHY+CMVDLLGR+G++ EA E+I++M  E D  +W  LLG C+  GN+E+AE A
Sbjct: 706 GLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKA 765

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A  L +L+P+ ++  +LL+++YA AG
Sbjct: 766 ANSLLQLDPQDSSAYVLLSNVYAIAG 791



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/573 (22%), Positives = 246/573 (42%), Gaps = 99/573 (17%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA------------------- 132
           +A+  GK  HAQ+ V+G      ++  L+ FY +C N+++A                   
Sbjct: 52  KAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMI 111

Query: 133 ------------RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF 180
                       + LFD +P+ ++  W ++   Y + G+H++++ +F +M +  ++ +  
Sbjct: 112 FGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYA 171

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
               VLKAC  + D G G ++H L ++  F +D    ++L+DMYS C  ++ A  +F EM
Sbjct: 172 TFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEM 231

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVE---------------------------EIGT 273
            E++ V  +A+++GYV+    TE L L +                           E+GT
Sbjct: 232 PERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGT 291

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHN 328
            ++    +  N        +    M +K  +++ A+ V      P   S  ++I G    
Sbjct: 292 -QLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQ 350

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               EA + F+ +          ++S  L AC++      G ++HG A+  G++ ++ V 
Sbjct: 351 DQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVA 410

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           + ++DMYAKCG + EA  +FD M  ++ V+WN++I     + + +E + LF  M     +
Sbjct: 411 NTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTME 470

Query: 448 LDHLSFTAVLTACC-----HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
            D  +F +V+ AC      + G+   G+ + + M   + +        C   +L  A ++
Sbjct: 471 PDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKI 530

Query: 503 AEAYE---------MIKTMSTE-------------------PDLFVWGALLGACKNHGNI 534
            E  E         +I   S+E                   PD F +  +L  C N   +
Sbjct: 531 HERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATV 590

Query: 535 ELAEIAAKHLSELEPESAAN-NMLLTDLYANAG 566
           EL +     + +L+  S       + D+Y+  G
Sbjct: 591 ELGKQIHGQILKLQLHSDVYIASTIVDMYSKCG 623



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 134/289 (46%), Gaps = 40/289 (13%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           + + C +L  I  G++ H+ +    F    FV + L+  Y KC ++  A  VFD+M ++D
Sbjct: 44  IFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRD 103

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +++ N M+ GY   G    A  L + +     + +VV+WN+++S + ++G      ++F 
Sbjct: 104 VISWNTMIFGYAGVGNMEFAQFLFDSMP----ERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            MR   ++ D                                    AT + +L AC    
Sbjct: 160 KMRLLEIQHDY-----------------------------------ATFAVVLKACTGIE 184

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           +   G ++H  AI MG + D+   +ALVDMY+ C  +  A  +F +M ERN+V W+++I 
Sbjct: 185 DYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIA 244

Query: 425 GCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           G   +    E ++L+  M +E   +   +F +   +C  +   ELG +L
Sbjct: 245 GYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQL 293



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 4/131 (3%)

Query: 348 PTSA-TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
           PT   T S I   C++   +  GK+ H    V G    + V + L+  Y KC  ++ A  
Sbjct: 35  PTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFN 94

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLV 466
           +FDKM +R+ ++WN+MIFG A  G  + A  LF+ M ER   D +S+ ++L+     G  
Sbjct: 95  VFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPER---DVVSWNSMLSCYLQNGFH 151

Query: 467 ELGQRLFNMMQ 477
                +F  M+
Sbjct: 152 RKSIEIFTKMR 162


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 269/486 (55%), Gaps = 20/486 (4%)

Query: 94  LQSGKILHAQLIVSGLARLTQ------IATKLITFYTECQNIHHARMLFDEIP-KTNIHR 146
           L+S +  HA+L+   L RL        +  KLI  Y  C  +  AR + D  P +T +  
Sbjct: 31  LRSLRAAHARLLF--LLRLPSHPASAAVRVKLIQAYAACAALPAARAVLDASPDRTTVFF 88

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLK--QNIFVIPSVLKACGHLSDIGTGEKIHSL 204
            + L G  A    H++A+ +F  M  QG     + +  P  LK+C     +  G +IHS 
Sbjct: 89  NVLLRGLTAA-SLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSS 147

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
             +     + FV  S I MY++CG  + A ++F+EM  +D+V+ NAM+SG+   GL   A
Sbjct: 148 TARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRA 207

Query: 265 LNLVEEIGTPRV-KPNVVTWNTLISGFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSV 321
           +++  E+   +  KP+  T  +++    K+   D  ++  +F  MR KG+    +SW ++
Sbjct: 208 MDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGL----ISWNAM 263

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           ++   +N  + EA + F  M   G  P + T++++LP+C   + +  GK IH       +
Sbjct: 264 LAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRM 323

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
              + + +AL+DMYA CG + EAR +FD M  R+ V+W S+I     HG+  EAI+LF +
Sbjct: 324 CSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEK 383

Query: 442 M-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M  +  + D ++F A+L AC H GL+++G+  F  M  ++ I P+ EHYACMVDLLGRAG
Sbjct: 384 MCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAG 443

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
            + EAY+ I  M  +P+  VWGALLGAC+ H N+++  +AA  L  L P+     +LL++
Sbjct: 444 CIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSN 503

Query: 561 LYANAG 566
           +YA AG
Sbjct: 504 IYARAG 509



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 9/242 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +H  +    +     +   L+  Y  C  +  AR +FD +   ++  W ++  
Sbjct: 307 ALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIIS 366

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
           AY R G+ +EA+ +F +M  QGL+ +     ++L AC H   +  G+   +S+  +    
Sbjct: 367 AYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIA 426

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ---RGLATEALNLV 268
                 + ++D+  + G + +A      M  K     N  V G +    R  +   + L+
Sbjct: 427 PKLEHYACMVDLLGRAGCIREAYDFIMVMPIKP----NERVWGALLGACRIHSNMDIGLL 482

Query: 269 EEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                 R+ P    +  L+S  ++++G    VS +  +M +KG++       + +   VH
Sbjct: 483 AADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVH 542

Query: 328 NF 329
            F
Sbjct: 543 TF 544


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/472 (33%), Positives = 250/472 (52%), Gaps = 43/472 (9%)

Query: 97  GKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G+ +H   +  G +     +   L+ FY   +++  A  +FDE+P+ ++  W  L   YA
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220

Query: 156 RRGYHQEAVTVFHEMHI-QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           R G   EA  +F  M +  G++ N   + + + A G +  +  G  +H  V +       
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSV 280

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            + ++L+DM+ KCG V  A++VFD M  KD                              
Sbjct: 281 NLDNALVDMFGKCGCVRYAREVFDGMEVKD------------------------------ 310

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                V +W ++++ ++K GD     +LF+ M  +    +VVSW+ +I+        +EA
Sbjct: 311 -----VYSWTSMVNAYAKCGDLESAEQLFKDMPRR----NVVSWSCMIAAYSQLNQPEEA 361

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG-DLHVRSALVD 393
              F+EM++ G  P  AT+ S+L ACA    +  G+ I+   IV    G  +++ +AL+D
Sbjct: 362 VWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALID 421

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLS 452
           M+AKCG + EA  LFD+M+ERN V+WN+MI   A HG  +EAI LF Q++ E    D ++
Sbjct: 422 MFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQIT 481

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  +L +C H GLV  G+R F  M+  Y+I PR EHYACM+DLLG+ G L EA+E+ + M
Sbjct: 482 FLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGM 541

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
             E D   WGALL AC+ HGN+E+    A  L EL+P  +   +L++ +YA+
Sbjct: 542 PMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYAS 593



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 148/324 (45%), Gaps = 40/324 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G +LH  +   G+AR   +   L+  + +C  + +AR +FD +   +++ W ++  A
Sbjct: 261 LAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNA 320

Query: 154 YARRG--------------------------YHQ-----EAVTVFHEMHIQGLKQNIFVI 182
           YA+ G                          Y Q     EAV +F EM   G+      +
Sbjct: 321 YAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATL 380

Query: 183 PSVLKACGHLSDIGTGEKIH-SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
            SVL AC  L  +  G  I+ + ++ +  G    + ++LIDM++KCG V +A K+FDEM 
Sbjct: 381 VSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMA 440

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           E+++V+ N M+  +   G + EA+ L E++    + P+ +T+  L++  S SG      +
Sbjct: 441 ERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRR 500

Query: 302 LFQLMRA-KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            F+ M     +EP V  +  +I  L      +EAF+  + M  +      A   ++L AC
Sbjct: 501 YFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEA---DEAGWGALLNAC 557

Query: 361 ASAANMRRGKEIHGCAIVMGVEGD 384
               N+    EI  C     VE D
Sbjct: 558 RMHGNV----EIGACVADKLVELD 577



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 118/265 (44%), Gaps = 24/265 (9%)

Query: 94  LQSGKILHAQLIVSGLARLT-QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L  G+ ++   IVS    LT  +   LI  + +C ++  A  LFDE+ + N+  W  +  
Sbjct: 393 LDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIM 452

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
           A+A  G  +EA+ +F ++  + +  +      +L +C H   +  G +    + + +   
Sbjct: 453 AHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIE 512

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS-----GYVQRGLATEAL 265
                 + +ID+  K G +E+A +V   M +E D     A+++     G V+ G A  A 
Sbjct: 513 PRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIG-ACVAD 571

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL-MRAKGVEPDVVSWTSVISG 324
            LVE      + P+      L+S    S ++    K+ ++ MR +GV+ +    +  + G
Sbjct: 572 KLVE------LDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEG 625

Query: 325 LVHNF--------CNDEAFDTFKEM 341
             H+F        C++E +   K +
Sbjct: 626 KFHDFLVADVSHACSEEIYSALKNI 650


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 269/509 (52%), Gaps = 43/509 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL++G+ +H+  + +G A    I + LI  Y+ C ++  A+ +FD +   ++  + +L  
Sbjct: 129 ALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLIS 188

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A+ R G  + A     +M  QGLK N   + ++L AC  +     G++IH  ++K     
Sbjct: 189 AFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLR 244

Query: 213 DAFVVSS--LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
              V SS  LID YS+ G  + AK VFD +  K++V+  +M+  Y++ G   EAL +  +
Sbjct: 245 SQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGD 304

Query: 271 IGTPRVKPN--------------------------------VVTWNTLISGFSKSGDQVM 298
           + +  V PN                                +   N L+S + ++G   +
Sbjct: 305 MISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTG---L 361

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           V +L + M  K   PD+VSWT+ IS    N   ++A     +M S+GF P     SS+L 
Sbjct: 362 VEEL-EAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLS 420

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           +CA  A++ +G + H  A+ +G + ++   +AL++MY+KCG +  AR  FD M   +  +
Sbjct: 421 SCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTS 480

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WNS+I G A HG  ++A+E+F++M     K D  +F  VL  C H G+VE G+  F +M 
Sbjct: 481 WNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMI 540

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++Y   P   HYACM+D+LGR GR  EA  MI  M  EPD  +W  LL +CK H N+++ 
Sbjct: 541 DQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIG 600

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++AA  L EL    +A+ +L++++YA  G
Sbjct: 601 KLAADRLMELSDRDSASYVLMSNIYAMHG 629



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 221/454 (48%), Gaps = 45/454 (9%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           LFD +P+ N+  W ++   Y R G  + A+ +F +M   G+  N F   + L AC  L  
Sbjct: 70  LFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGA 129

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  GE++HSL ++  F  DA++ S LI+MYS+CGS+  AK+VFD M   D+V   +++S 
Sbjct: 130 LRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISA 189

Query: 255 YVQRG---LATEALNLVEEIG--------------TPRV----------------KPNVV 281
           + + G   LA EAL  + + G               PRV                  +V 
Sbjct: 190 FCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVY 249

Query: 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
           +   LI  +S++G+  +   +F  +  K    +VVSW S++   + +   +EA   F +M
Sbjct: 250 SSTALIDFYSRNGEFKLAKAVFDSLHCK----NVVSWCSMMQLYIRDGRLEEALQVFGDM 305

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
           +S+G  P    +S +L AC S      G+++H  AI   +  D+ V +AL+ MY + G +
Sbjct: 306 ISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLV 362

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTAC 460
            E   + +K+   + V+W + I     +G+ ++AI L  QM  E    +  +F++VL++C
Sbjct: 363 EELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 422

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
             V  ++ G + F+ +  K            ++++  + G++  A      M T  D+  
Sbjct: 423 ADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTH-DVTS 480

Query: 521 WGALLGACKNHGNIELA-EIAAKHLSE-LEPESA 552
           W +L+     HG+   A E+ +K  S  ++P+ +
Sbjct: 481 WNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDS 514



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 164/370 (44%), Gaps = 45/370 (12%)

Query: 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT 285
           K G +  A  +FD M  K++VA  +++SGY + G    AL +  ++    V PN    N 
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 286 LIS-----GFSKSGDQV---------------------MVSKLFQLMRAKGV-----EPD 314
            +      G  ++G+QV                     M S+   L  AK V      PD
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           VV +TS+IS    N   + A +   +ML QG  P   T+++IL AC        G++IHG
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHG 235

Query: 375 CAI-VMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
             I  +G+    ++  +AL+D Y++ G    A+ +FD +  +N V+W SM+      G  
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 295

Query: 433 DEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           +EA+++F  M  E    +  + + VL AC  +GL     R  +    K+ ++        
Sbjct: 296 EEALQVFGDMISEGVDPNEFALSIVLGACGSIGL----GRQLHCSAIKHDLITDIRVSNA 351

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE--LAEIAAKHLSELEP 549
           ++ + GR G + E   M+  +   PDL  W   + A   +G  E  +A +   H     P
Sbjct: 352 LLSMYGRTGLVEELEAMLNKIEN-PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTP 410

Query: 550 ESAANNMLLT 559
              A + +L+
Sbjct: 411 NGYAFSSVLS 420



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 7/166 (4%)

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           +GCA       D+ +    ++   K G +++A  LFD+M  +N V W S++ G   +G  
Sbjct: 40  NGCA----ESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRP 95

Query: 433 DEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           + A+ +F  M E     +  +  A L AC  +G +  G+++ ++   +          +C
Sbjct: 96  EAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAV-RAGFAGDAWIGSC 154

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           ++++  R G L  A E+   M + PD+  + +L+ A   +G  ELA
Sbjct: 155 LIEMYSRCGSLPAAKEVFDRMDS-PDVVGYTSLISAFCRNGEFELA 199


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 243/470 (51%), Gaps = 40/470 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +HAQ    G+     +   ++  Y  C  I  AR +FD+I +  +  W ++   Y++
Sbjct: 153 GVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSK 212

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G  +EAV +F EM   GL+ ++F +  +L       +   G  +H  ++      D+ V
Sbjct: 213 MGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIV 272

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY+KCG+++ AK VFD+M++KD+V+   M++ Y   GL   AL    ++     
Sbjct: 273 TNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMP---- 328

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             NVV+WN++I                              W  V  GL       EA D
Sbjct: 329 GKNVVSWNSII------------------------------WCHVQEGLY-----AEAVD 353

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F  M   G      T+ +IL +C+   ++  GK+ H       +     + +A++DMYA
Sbjct: 354 LFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYA 413

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTA 455
           KCG +  A  +F  M E+N V+WN +I   A HGY  EAIE+F +M+      D ++FT 
Sbjct: 414 KCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTG 473

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           +L+AC H GLV+ GQ  F +M   + I P  EHYACMVDLLGR G L EA  +IK M  +
Sbjct: 474 LLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVK 533

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           PD+ VW ALLGAC+ +GN+ + +   K L EL   ++   +LL+++Y+ +
Sbjct: 534 PDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSES 583



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 49/323 (15%)

Query: 220 LIDMYSKCGSVEKAKKVFDEMV----EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           LID   +C S+++ K V  +++       ++ +  +VS  VQ      A  L ++I    
Sbjct: 42  LID---QCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIP--- 95

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
            +PN   +N LI G+S S D +                                   ++ 
Sbjct: 96  -QPNKFMFNHLIKGYSNSSDPI-----------------------------------KSL 119

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             ++ M+  G  P   TI  +L ACA+ +    G  +H  +  +G+     V++A++++Y
Sbjct: 120 LLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIY 179

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
             CG I+ AR +FD +SER  V+WNSMI G +  G  +EA+ +F +M+E   + D  +  
Sbjct: 180 VACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLV 239

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L+     G  +LG R  ++      I   +     ++D+  + G L  A  +   M  
Sbjct: 240 GLLSVSTKHGNFDLG-RFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQM-L 297

Query: 515 EPDLFVWGALLGACKNHGNIELA 537
           + D+  W  ++ A  NHG I+ A
Sbjct: 298 DKDVVSWTCMINAYANHGLIDCA 320



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 39/219 (17%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK  H+ +  + +     +   +I  Y +C  +  A  +F  +P+ N   W  + GA
Sbjct: 383 LALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGA 442

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A  GY +EA+ +F +M   G+  +      +L AC H   + TG+     ++  +FG  
Sbjct: 443 LALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFE-IMNLTFG-- 499

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
                                      +  D+     MV    +RGL  EA++L++++  
Sbjct: 500 ---------------------------ISPDVEHYACMVDLLGRRGLLGEAISLIKKM-- 530

Query: 274 PRVKPNVVTWNTLIS-----GFSKSGDQVMVSKLFQLMR 307
             VKP+VV W+ L+      G    G Q+M  +L +L R
Sbjct: 531 -PVKPDVVVWSALLGACRTYGNLAIGKQIM-KQLLELGR 567



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 121/309 (39%), Gaps = 66/309 (21%)

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
           +S +F+L  AK V                +FC        K +L +   PT  T+  ++ 
Sbjct: 1   MSSIFKLKPAKAV----------------SFCIHTETQISKTILQELKSPTHQTLHYLID 44

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
            C S   +++ K +H   I+ G+   +     LV    +   +  A  LFD++ + N   
Sbjct: 45  QCIS---LKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFM 101

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTAC----CH----------- 462
           +N +I G +N     +++ L+ +M     L +  +   VL AC    C+           
Sbjct: 102 FNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSF 161

Query: 463 --------------------VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
                                GL+   +R+F+ + E+  +      +  M++   + GR 
Sbjct: 162 KLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLV-----SWNSMINGYSKMGRS 216

Query: 503 AEAYEMIKTMST---EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNML 557
            EA  M + M     EPD+F    LL     HGN +L      H+  + +E +S   N L
Sbjct: 217 EEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNAL 276

Query: 558 LTDLYANAG 566
           + D+YA  G
Sbjct: 277 M-DMYAKCG 284


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 167/502 (33%), Positives = 263/502 (52%), Gaps = 36/502 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H   +  G      ++   +  Y +C  +  A + FD+I   +I  W  +   YA+
Sbjct: 165 GKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQ 224

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             Y +EA+ +F++M ++G K N      VLKA   +SD   G   H+ VLK     D FV
Sbjct: 225 NCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFV 284

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMYSK   +E  ++ F EM ++++V+ NA+++GY   G   EAL +  ++ +  +
Sbjct: 285 ATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGM 344

Query: 277 KPNVVTWNTLISGFSKS-----GDQVMVSKL-FQLMRAKGV------------------- 311
           +P+  T+  L S  S S     G QV V  + F L     V                   
Sbjct: 345 EPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALE 404

Query: 312 ------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                  P+ V W  +ISG   N   ++A   F +M          + SS++ A +S A 
Sbjct: 405 AFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAA 464

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           + +G+ +H   +  G++  ++V SA++DMY+KCG + +A+ +F  M E+N V+WNSMI G
Sbjct: 465 VEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITG 524

Query: 426 CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A +G+C EA+ LF +M     L   ++F  +L AC H GLVE G+  +N+M   Y I P
Sbjct: 525 YAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPP 584

Query: 485 RTEHYACMVDLLGRAGRL--AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
             EH  CMVDLLGRAG L  AEA+ +  + S EP   +WG+LL AC  H N ++   AA+
Sbjct: 585 SMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPG--IWGSLLSACGVHKNSDVGSRAAQ 642

Query: 543 HLSELEPESAANNMLLTDLYAN 564
           H   LEP  +++   L+++YA+
Sbjct: 643 HCLFLEPHYSSSYTALSNIYAS 664



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 227/469 (48%), Gaps = 38/469 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LH  ++  G +    +++ LI+ Y++   I  AR LFD++P+ +   W ++   Y++RG 
Sbjct: 63  LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGL 122

Query: 160 HQEAVTVFHEM----HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           ++EA  +F  M        L  + F + +VLKACG L     G+ +H   +K  F +D F
Sbjct: 123 NEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLF 182

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V  S + MY KCG ++ A   FD++  KDIVA N M++GY Q     EA+ L  ++    
Sbjct: 183 VSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEG 242

Query: 276 VKPNVVTWNTLISGFSKSGDQV--------------------------MVSKLFQL---M 306
            KPN  T+  ++   +   D                            M SK + +    
Sbjct: 243 FKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVE 302

Query: 307 RAKG--VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           RA G   + ++VS+ ++I+G       +EA   + ++ S+G  P S T   +  +C+ ++
Sbjct: 303 RAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSS 362

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
            +  G ++H  ++  G++ D+ V +++V+ Y+KCGF   A   F+ ++  N+V W  +I 
Sbjct: 363 TVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIIS 422

Query: 425 GCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A +G  ++A+  F +M +   K D  S ++V+ A      VE G+ L   +  K  + 
Sbjct: 423 GFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVM-KSGLD 481

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                 + ++D+  + G + +A ++   M  E ++  W +++     +G
Sbjct: 482 CTIYVGSAVIDMYSKCGMVEDAQKVFSVM-PEKNVVSWNSMITGYAQNG 529



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 205/437 (46%), Gaps = 46/437 (10%)

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           +TN+ RW +     ARRG   +A++ F +M   G++ N     + + AC   +       
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H L+LK  F    FV S LI MYSK   +++A+ +FD+M E+D V+ N+M++GY QRGL
Sbjct: 63  LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGL 122

Query: 261 ATEA-------LNLVEE-------------------IGTPRVKPNVVTW--------NTL 286
             EA       +N  E                    +G  R+   V  +        +  
Sbjct: 123 NEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLF 182

Query: 287 ISG-----FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
           +SG     + K G   M    F  +  K    D+V+W ++I+G   N   +EA + F +M
Sbjct: 183 VSGSTVYMYCKCGILDMAGLAFDQIENK----DIVAWNTMITGYAQNCYEEEAIELFYQM 238

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             +GF P   T   +L A  + ++   G+  H   + +G   D+ V +ALVDMY+K   I
Sbjct: 239 ELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDI 298

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC 460
            +    F +MS+RN V++N++I G +  G  +EA+ +++Q++ E  + D  +F  + ++C
Sbjct: 299 EDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSC 358

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
                V  G ++ ++   K+ +         +V+   + G    A E  ++++  P+   
Sbjct: 359 SVSSTVAEGAQV-HVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESIN-RPNSVC 416

Query: 521 WGALLGACKNHGNIELA 537
           W  ++     +G  E A
Sbjct: 417 WAGIISGFAQNGEGEKA 433



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 160/374 (42%), Gaps = 71/374 (18%)

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M+E ++V   + ++   +RGL  +AL+   ++    ++PN +T++  IS  ++S    + 
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 300 SKLFQLMRAKGV-------------------------------EPDVVSWTSVISGLVHN 328
           + L  L+  KG                                E D VSW S+I+G    
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 329 FCNDEAFDTFKEMLSQ----GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
             N+EA   F  M++         +  T++++L AC      R GK +HG A+ +G + D
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSD 180

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME- 443
           L V  + V MY KCG +  A   FD++  ++ V WN+MI G A + Y +EAIELF QME 
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMEL 240

Query: 444 ERKKLDHLSFTAVLTA-----------CCHVGLVELG--------QRLFNMMQEKYKIMP 484
           E  K +  +F  VL A           C H  +++LG          L +M  + Y I  
Sbjct: 241 EGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIED 300

Query: 485 RTEHYACM--------------VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
               +  M                L+G+       Y  +++   EPD F +  L  +C  
Sbjct: 301 VERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSV 360

Query: 531 HGNIELAEIAAKHL 544
              +  AE A  H+
Sbjct: 361 SSTV--AEGAQVHV 372



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G+ LHA ++ SGL     + + +I  Y++C  +  A+ +F  +P+ N+  W ++  
Sbjct: 464 AVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMIT 523

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G+ +EA+ +F EM   G+         +L AC H   +  G   ++L++ H++G 
Sbjct: 524 GYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMV-HNYGI 582

Query: 213 DAFV--VSSLIDMYSKCGSVEKAK 234
              +   + ++D+  + G +E+A+
Sbjct: 583 PPSMEHCTCMVDLLGRAGYLEEAE 606


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/511 (31%), Positives = 265/511 (51%), Gaps = 47/511 (9%)

Query: 58  GIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIAT 117
           G+ +E H K         L    Y+  +    R  +L  GK LHA++I S       +A+
Sbjct: 256 GLVVEMHRK------GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 309

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            LI  Y +C +   A+ +F+ +   N   W  L G   +     ++V +F++M  + +  
Sbjct: 310 ALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           + F + +++  C +  D+  G ++HSL LK        V +SLI +Y+KCG ++ A+ VF
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
             M E+DIV                                   +W ++I+ +S+ G+ +
Sbjct: 430 SSMSERDIV-----------------------------------SWTSMITAYSQIGNII 454

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSI 356
              + F  M  +    + ++W +++   + +   ++    +  MLSQ    P   T  ++
Sbjct: 455 KAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
              CA     + G +I G  +  G+  ++ V +A + MY+KCG ISEA+ LFD ++ ++ 
Sbjct: 511 FRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDV 570

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN+MI G + HG   +A + F+ M  +  K D++S+ AVL+ C H GLV+ G+  F+M
Sbjct: 571 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 630

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M   + I P  EH++CMVDLLGRAG L EA ++I  M  +P   VWGALL ACK HGN E
Sbjct: 631 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 690

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           LAE+AAKH+ EL+   + + MLL  +Y++AG
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLLAKIYSDAG 721



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 206/480 (42%), Gaps = 83/480 (17%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM------------------ 134
           AL   + LH +L+  GLA    +   L+  Y  C  +  AR                   
Sbjct: 19  ALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMM 78

Query: 135 --------------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNI 179
                         LFD +P+ ++  W  L   Y +     + +  F  MH  G    N 
Sbjct: 79  NGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNA 138

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F    V+K+CG L       ++  L  K  F  D  V ++L+DM+ +CG V+ A ++F +
Sbjct: 139 FTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQ 198

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           +    I   N+M++GY +      A+   E++     + +VV+WN +I+  S+SG     
Sbjct: 199 IERPTIFCRNSMLAGYAKLYGIDHAIEYFEDM----AERDVVSWNMMIAALSQSGRVREA 254

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             L   M  KGV  D                                   S T +S L A
Sbjct: 255 LGLVVEMHRKGVRLD-----------------------------------STTYTSSLTA 279

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA   ++  GK++H   I    + D +V SAL+++YAKCG   EA+ +F+ + +RN+V+W
Sbjct: 280 CARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 339

Query: 420 NSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM-- 476
             +I G   +    +++ELFNQM  E   +D  +   +++ C +   + LG++L ++   
Sbjct: 340 TVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLK 399

Query: 477 --QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
               +  ++  +     ++ L  + G L  A  +  +MS E D+  W +++ A    GNI
Sbjct: 400 SGHNRAIVVSNS-----LISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITAYSQIGNI 453



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 157/381 (41%), Gaps = 77/381 (20%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           +   L++CG    +     +H  ++     +  F+ ++L+  Y  CG++  A++    ++
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARR----LL 62

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
             DI                               +PNV+T N +++G++K G      +
Sbjct: 63  RADIK------------------------------EPNVITHNIMMNGYAKQGSLSDAEE 92

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPAC 360
           LF  M  +    DV SW +++SG        +  +TF  M   G   P + T   ++ +C
Sbjct: 93  LFDRMPRR----DVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSC 148

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL------------- 407
            +        ++ G        GD  V +ALVDM+ +CG++  A  L             
Sbjct: 149 GALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRN 208

Query: 408 ------------------FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
                             F+ M+ER+ V+WN MI   +  G   EA+ L  +M  +  +L
Sbjct: 209 SMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRL 268

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAY 506
           D  ++T+ LTAC  +  +  G++L     +  + +P+ + Y  + +++L  + G   EA 
Sbjct: 269 DSTTYTSSLTACARLFSLGWGKQLH---AKVIRSLPQIDPYVASALIELYAKCGSFKEAK 325

Query: 507 EMIKTMSTEPDLFVWGALLGA 527
            +  ++  + +   W  L+G 
Sbjct: 326 RVFNSLQ-DRNSVSWTVLIGG 345



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 11/243 (4%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +    + +GL     +A   IT Y++C  I  A+ LFD +   ++  W A+   Y++
Sbjct: 523 GDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQ 582

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAF 215
            G  ++A   F +M  +G K +     +VL  C H   +  G+    ++ + H       
Sbjct: 583 HGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 642

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM-NAMVSGYVQRG---LATEALNLVEEI 271
             S ++D+  + G + +AK + D+M  K    +  A++S     G   LA  A   V E+
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 702

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFC 330
            +P     ++    + S   KS D   V K   LMR KG++ +   SW  V    VH F 
Sbjct: 703 DSPDSGSYMLL-AKIYSDAGKSDDSAQVRK---LMRDKGIKKNPGYSWMEV-ENKVHVFK 757

Query: 331 NDE 333
            D+
Sbjct: 758 ADD 760


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 167/517 (32%), Positives = 268/517 (51%), Gaps = 61/517 (11%)

Query: 59  IFIEAHYKMPIISRS---FHLSP----AAYSERIEIYIRDRALQSGKILHAQLIVSGLAR 111
           + I +H    ++S +   F L+P     +++  +  Y+R+     G++  A+ + +    
Sbjct: 11  VMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN-----GRVEEARGLFNSRTE 65

Query: 112 LTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
              I+   L++ Y +   +  AR LFD +P  ++  W  +   YARRG   EA  +F   
Sbjct: 66  WDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAA 125

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
            ++                                       D F  ++++  Y++ G +
Sbjct: 126 PVR---------------------------------------DVFTWTAVVSGYAQNGML 146

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
           E+A++VFD M E++ V+ NAMV+ Y+QR +  EA  L   +       NV +WNT+++G+
Sbjct: 147 EEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGY 202

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +++G       +F  M  K    D VSW ++++      C++E    F EM   G     
Sbjct: 203 AQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 258

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           +  + +L  CA  A +  G ++HG  I  G      V +AL+ MY KCG + +AR  F++
Sbjct: 259 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 318

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELG 469
           M ER+ V+WN+MI G A HG+  EA+E+F+ M     K D ++   VL AC H GLVE G
Sbjct: 319 MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 378

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
              F  M   + +  + EHY CM+DLLGRAGRLAEA++++K M  EPD  +WGALLGA +
Sbjct: 379 ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASR 438

Query: 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            H N EL   AA+ + ELEPE+A   +LL+++YA++G
Sbjct: 439 IHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSG 475



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 20/363 (5%)

Query: 57  NGIFIEAHYKMPIISRSFHLSP----AAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
           NG+  EA        R F   P     +++  +  YI+ R +   K L   +    +A  
Sbjct: 143 NGMLEEAR-------RVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 195

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
                 ++T Y +   +  A+ +FD +P+ +   W A+  AY++ G  +E + +F EM  
Sbjct: 196 NT----MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR 251

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            G   N      VL  C  ++ +  G ++H  +++  +G   FV ++L+ MY KCG++E 
Sbjct: 252 CGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMED 311

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           A+  F+EM E+D+V+ N M++GY + G   EAL + + + T   KP+ +T   +++  S 
Sbjct: 312 ARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSH 371

Query: 293 SG-DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           SG  +  +S  + +    GV      +T +I  L       EA D  K+M    F P S 
Sbjct: 372 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM---PFEPDST 428

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
              ++L A     N   G+        +  E +  +   L ++YA  G   +AR +   M
Sbjct: 429 MWGALLGASRIHRNPELGRSAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMM 487

Query: 412 SER 414
            ER
Sbjct: 488 EER 490



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 119/267 (44%), Gaps = 50/267 (18%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D+   + +I  ++  G V  A+  FD   EKD V+ N M++ YV+ G   EA  L     
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF---- 60

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
             R + +V++WN L+SG+ + G      +LF  M  +    DVVSW  ++SG        
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGY------- 109

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
                                       A   +M   + +   A V     D+   +A+V
Sbjct: 110 ----------------------------ARRGDMVEARRLFDAAPVR----DVFTWTAVV 137

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS 452
             YA+ G + EAR +FD M ERN V+WN+M+         DEA ELFN M  R   +  S
Sbjct: 138 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR---NVAS 194

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEK 479
           +  +LT     G++E  + +F+ M +K
Sbjct: 195 WNTMLTGYAQAGMLEEAKAVFDTMPQK 221



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           + ++  +A  G +S AR  FD   E++ V+WN M+     +G  +EA  LFN    R + 
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS---RTEW 66

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D +S+ A+++     G +   + LF+ M  +  +      +  MV    R G + EA  +
Sbjct: 67  DVISWNALMSGYVQWGKMSEARELFDRMPGRDVV-----SWNIMVSGYARRGDMVEARRL 121

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELA 537
                   D+F W A++     +G +E A
Sbjct: 122 FDAAPVR-DVFTWTAVVSGYAQNGMLEEA 149



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQ 470
           M  R++VT+N MI   ANHG    A   F+   E+   D +S+  +L A    G VE  +
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK---DAVSWNGMLAAYVRNGRVEEAR 57

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
            LFN   E   I      +  ++    + G+++EA E+   M    D+  W  ++     
Sbjct: 58  GLFNSRTEWDVI-----SWNALMSGYVQWGKMSEARELFDRMPGR-DVVSWNIMVSGYAR 111

Query: 531 HGNIELAEIAAKHLSELEP 549
            G++    + A+ L +  P
Sbjct: 112 RGDM----VEARRLFDAAP 126


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 248/431 (57%), Gaps = 34/431 (7%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M IQGL+       SVL  C   + I  G+++H+ ++K  +    ++ + LI +Y+KC  
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
           +  A++V DEM E+++V+  AM+SGY QRG A+EAL+L  E+      PN  T+ T+++ 
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 290 FSKS-----GDQV---------------------MVSKLFQLMRAKGV-----EPDVVSW 318
            + S     G Q+                     M +K  ++  A+ V     E DVVS 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           T++ISG      ++EA D F+ +  +G      T +S+L A +  A +  G+++H   + 
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
             +   + ++++L+DMY+KCG ++ +R +FD M ER  ++WN+M+ G + HG   EA+EL
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300

Query: 439 FNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMVDL 495
           F  M+E  K+  D ++F AVL+ C H G+ + G  +F  M+ +K    P  EHY C+VDL
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
            GRAGR+ EA+E IK M  EP   +WG+LLGAC+ H N+ + E  A+ L E+E E+A N 
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 420

Query: 556 MLLTDLYANAG 566
           ++L++LYA+AG
Sbjct: 421 VILSNLYASAG 431



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 183/380 (48%), Gaps = 43/380 (11%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           I   A++ G+ +HA +I +       + T+LI  Y +C+ +  AR + DE+P+ N+  W 
Sbjct: 21  ISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWT 80

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+   Y++RGY  EA+ +F EM + G   N F   +VL +C   S    G +IHSLV+K 
Sbjct: 81  AMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKT 140

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
           SF +  FV SSL+DMY+K G + +A++VFD + E+D+V+  A++SGY Q GL  EAL+L 
Sbjct: 141 SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLF 200

Query: 269 EEIGTPRVKPNVVTW-----------------------------------NTLISGFSKS 293
             +    ++ N VT+                                   N+LI  +SK 
Sbjct: 201 RRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKC 260

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSAT 352
           G      ++F  M     E  V+SW +++ G   +    EA + FK M  +    P S T
Sbjct: 261 GSLTYSRRIFDSM----PERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVT 316

Query: 353 ISSILPACASAANMRRGKEIHGCAIVM--GVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
             ++L  C+      RG EI    +    G E ++     +VD++ + G + EA     K
Sbjct: 317 FLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKK 376

Query: 411 MS-ERNTVTWNSMIFGCANH 429
           M  E     W S++  C  H
Sbjct: 377 MPFEPTAAIWGSLLGACRVH 396



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 172/330 (52%), Gaps = 11/330 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
             Q G+ +H+ +I +       + + L+  Y +   I  AR +FD +P+ ++    A+  
Sbjct: 126 GFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIIS 185

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G  +EA+ +F  +  +G++ N     SVL A   L+ +  G ++HS VL+     
Sbjct: 186 GYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPF 245

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              + +SLIDMYSKCGS+  ++++FD M E+ +++ NAM+ GY + GL  EA+ L + + 
Sbjct: 246 YVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMK 305

Query: 273 TP-RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM--RAKGVEPDVVSWTSVISGLVHNF 329
              +VKP+ VT+  ++SG S  G +    ++F  M  +  G EP++  +  V+       
Sbjct: 306 EENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAG 365

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE--GDLHV 387
             +EAF+  K+M    F PT+A   S+L AC    N+  G+ +    + +  E  G+  +
Sbjct: 366 RVEEAFEFIKKM---PFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVI 422

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTV 417
              L ++YA  G   + RT+ + M E+  +
Sbjct: 423 ---LSNLYASAGRWDDVRTVRELMKEKAVI 449


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/474 (33%), Positives = 253/474 (53%), Gaps = 43/474 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
            K LHAQ+I +GL +   I   L+  Y +C  I  A  LFD +P+ +   W +L  A   
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS--DIGTGEKIHSLVLKHSFGTDA 214
                 A+++   +   G   + FV  S++KAC +L    +  G+++H+      F  D 
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            V SSLIDMY+K G  +  + VFD      I ++N+                        
Sbjct: 142 VVKSSLIDMYAKFGLPDYGRAVFDS-----ISSLNS------------------------ 172

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                 ++W T+ISG+++SG +    +LF+    +    ++ +WT++ISGLV +    +A
Sbjct: 173 ------ISWTTMISGYARSGRKFEAFRLFRQTPYR----NLFAWTALISGLVQSGNGVDA 222

Query: 335 FDTFKEMLSQGFCPTSA-TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           F  F EM  +G   T    +SS++ ACA+ A    GK++HG  I +G E  L + +AL+D
Sbjct: 223 FHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALID 282

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLS 452
           MYAKC  +  A+ +F +M  ++ V+W S+I G A HG  +EA+ L+++M     K + ++
Sbjct: 283 MYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVT 342

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           F  ++ AC H GLV  G+ LF  M E + I P  +HY C++DL  R+G L EA  +I+TM
Sbjct: 343 FVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTM 402

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              PD   W ALL +CK HGN ++A   A HL  L+PE  ++ +LL+++YA AG
Sbjct: 403 PVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAG 456



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 177/402 (44%), Gaps = 55/402 (13%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ GK +HA+  +S  +    + + LI  Y +     + R +FD I   N   W  +   
Sbjct: 122 VKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISG 181

Query: 154 YARRGYHQEAVTVFHEMH----------IQGLKQ----------------------NIFV 181
           YAR G   EA  +F +            I GL Q                      +  V
Sbjct: 182 YARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLV 241

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           + SV+ AC +L+    G+++H +V+   + +  F+ ++LIDMY+KC  +  AK +F EM 
Sbjct: 242 LSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMC 301

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
            KD+V+  +++ G  Q G A EAL L +E+    VKPN VT+  LI   S +G   +VSK
Sbjct: 302 RKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAG---LVSK 358

Query: 302 ---LFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              LF+ M    G+ P +  +T ++     +   DEA +  + M      P   T +++L
Sbjct: 359 GRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVN---PDEPTWAALL 415

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF---ISEARTLFDKMSER 414
            +C    N +    I    + +  E D      L ++YA  G    +S+ R L   +  +
Sbjct: 416 SSCKRHGNTQMAVRIADHLLNLKPE-DPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAK 474

Query: 415 NTVTWNSMIFGCANHGYC---------DEAIELFNQMEERKK 447
               ++ +  G  +H +          DE I L  +++E  +
Sbjct: 475 KAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMR 516


>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
 gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 249/467 (53%), Gaps = 42/467 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA  +  GL +L QI +  ++       + +A  +F +     I  + A+   Y+  G 
Sbjct: 28  IHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLNGP 87

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            +E+  +F  M  +G+  + + +  +LKAC  L  +  G+ +H  VL   F   + +   
Sbjct: 88  FEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIG 147

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           +I++YS CG +E A+KVFDEM ++D                                   
Sbjct: 148 VIELYSSCGVMEDAEKVFDEMYQRD----------------------------------- 172

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
           V+ WN +I GF K GD  M   LF+ MR +     VVSW  +IS L  +  + EA   F 
Sbjct: 173 VIVWNLMIHGFCKRGDVDMGLCLFRQMRKR----SVVSWNIMISCLAQSRRDSEALGLFH 228

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD-LHVRSALVDMYAKC 398
           +ML  GF P  AT+ ++LP CA   ++  GK IH  A   G+  D + V +ALVD Y K 
Sbjct: 229 DMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKS 288

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVL 457
           G    AR +FD+M  +N ++WN++I G A +G  +  +EL  +M  E  + +  +F  VL
Sbjct: 289 GMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVL 348

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM-STEP 516
           + C H GL E G+ L   M E ++I P+ EHY CMVDLLGR+G + EAY++I+ M    P
Sbjct: 349 SCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAP 408

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           +  +WG+LL AC+ HG++ELA +A K L +LEP ++ N +LL+++YA
Sbjct: 409 NAALWGSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYA 455



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 43/310 (13%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           LQ GK +H +++V G    + I   +I  Y+ C  +  A  +FDE+ + ++  W  +   
Sbjct: 123 LQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHG 182

Query: 154 YARRG--------YHQ-----------------------EAVTVFHEMHIQGLKQNIFVI 182
           + +RG        + Q                       EA+ +FH+M   G K +   +
Sbjct: 183 FCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATV 242

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV-SSLIDMYSKCGSVEKAKKVFDEMV 241
            +VL  C  L  +  G+ IHS         D   V ++L+D Y+K G  E A++VFDEM 
Sbjct: 243 VTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMP 302

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS-----GFSKSGDQ 296
            K++++ N ++SG    G     + L+EE+    V+PN  T+  ++S     G  + G +
Sbjct: 303 RKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRE 362

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           ++ S    ++    +EP +  +  ++  L  + C  EA+D  + M   G  P +A   S+
Sbjct: 363 LLAS----MVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIM--PGGAPNAALWGSL 416

Query: 357 LPACASAANM 366
           L AC +  ++
Sbjct: 417 LSACRTHGDV 426



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 33/212 (15%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLAR-LTQIATKLITFYTECQNIHHARMLFDEIPKTN 143
           + I  R  ++  GK +H+    SGL R    +   L+ FY +      AR +FDE+P+ N
Sbjct: 246 LPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKN 305

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
           +  W  L    A  G  +  V +  EM  +G++ N      VL  C H      G ++ +
Sbjct: 306 VISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLA 365

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            +++H                                +E  +     MV    + G   E
Sbjct: 366 SMVEH------------------------------HQIEPKLEHYGCMVDLLGRSGCVRE 395

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           A +L+  +  P   PN   W +L+S     GD
Sbjct: 396 AYDLIRIM--PGGAPNAALWGSLLSACRTHGD 425



 Score = 42.0 bits (97), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
           +EIH   +  G+     + S  V +      ++ A  +F +      + +N+MI G + +
Sbjct: 26  REIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLN 85

Query: 430 GYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G  +E+  LF+ M+ R    D  +   +L AC  +G+++LG+ +      K  ++   E 
Sbjct: 86  GPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCM-----HKEVLVVGFEG 140

Query: 489 YACM----VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELA 537
           ++ +    ++L    G + +A ++   M  + D+ VW  ++ G CK  G++++ 
Sbjct: 141 FSAIRIGVIELYSSCGVMEDAEKVFDEM-YQRDVIVWNLMIHGFCK-RGDVDMG 192


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/511 (31%), Positives = 265/511 (51%), Gaps = 47/511 (9%)

Query: 58  GIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIAT 117
           G+ +E H K         L    Y+  +    R  +L  GK LHA++I S       +A+
Sbjct: 256 GLVVEMHRK------GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 309

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
            LI  Y +C +   A+ +F+ +   N   W  L G   +     ++V +F++M  + +  
Sbjct: 310 ALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           + F + +++  C +  D+  G ++HSL LK        V +SLI +Y+KCG ++ A+ VF
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVF 429

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
             M E+DIV                                   +W ++I+ +S+ G+ +
Sbjct: 430 SSMSERDIV-----------------------------------SWTSMITAYSQIGNII 454

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSI 356
              + F  M  +    + ++W +++   + +   ++    +  MLSQ    P   T  ++
Sbjct: 455 KAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
              CA     + G +I G  +  G+  ++ V +A + MY+KCG ISEA+ LFD ++ ++ 
Sbjct: 511 FRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDV 570

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           V+WN+MI G + HG   +A + F+ M  +  K D++S+ AVL+ C H GLV+ G+  F+M
Sbjct: 571 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 630

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M   + I P  EH++CMVDLLGRAG L EA ++I  M  +P   VWGALL ACK HGN E
Sbjct: 631 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 690

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           LAE+AAKH+ EL+   + + MLL  +Y++AG
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLLAKIYSDAG 721



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 206/480 (42%), Gaps = 83/480 (17%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM------------------ 134
           AL   + LH +L+  GLA    +   L+  Y  C  +  AR                   
Sbjct: 19  ALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMM 78

Query: 135 --------------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNI 179
                         LFD +P+ ++  W  L   Y +     + +  F  MH  G    N 
Sbjct: 79  NGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNA 138

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F    V+K+CG L       ++  L  K  F  D  V ++L+DM+ +CG V+ A ++F +
Sbjct: 139 FTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQ 198

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           +    I   N+M++GY +      A+   E++     + +VV+WN +I+  S+SG     
Sbjct: 199 IERPTIFCRNSMLAGYAKLYGIDHAIEYFEDM----AERDVVSWNMMIAALSQSGRVREA 254

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             L   M  KGV  D                                   S T +S L A
Sbjct: 255 LGLVVEMHRKGVRLD-----------------------------------STTYTSSLTA 279

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA   ++  GK++H   I    + D +V SAL+++YAKCG   EA+ +F+ + +RN+V+W
Sbjct: 280 CARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 339

Query: 420 NSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM-- 476
             +I G   +    +++ELFNQM  E   +D  +   +++ C +   + LG++L ++   
Sbjct: 340 TVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLK 399

Query: 477 --QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
               +  ++  +     ++ L  + G L  A  +  +MS E D+  W +++ A    GNI
Sbjct: 400 SGHNRAIVVSNS-----LISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITAYSQIGNI 453



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 157/381 (41%), Gaps = 77/381 (20%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           +   L++CG    +     +H  ++     +  F+ ++L+  Y  CG++  A++    ++
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARR----LL 62

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
             DI                               +PNV+T N +++G++K G      +
Sbjct: 63  RADIK------------------------------EPNVITHNIMMNGYAKQGSLSDAEE 92

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPAC 360
           LF  M  +    DV SW +++SG        +  +TF  M   G   P + T   ++ +C
Sbjct: 93  LFDRMPRR----DVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSC 148

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL------------- 407
            +        ++ G        GD  V +ALVDM+ +CG++  A  L             
Sbjct: 149 GALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRN 208

Query: 408 ------------------FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
                             F+ M+ER+ V+WN MI   +  G   EA+ L  +M  +  +L
Sbjct: 209 SMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRL 268

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY--ACMVDLLGRAGRLAEAY 506
           D  ++T+ LTAC  +  +  G++L     +  + +P+ + Y  + +++L  + G   EA 
Sbjct: 269 DSTTYTSSLTACARLFSLGWGKQLH---AKVIRSLPQIDPYVASALIELYAKCGSFKEAK 325

Query: 507 EMIKTMSTEPDLFVWGALLGA 527
            +  ++  + +   W  L+G 
Sbjct: 326 RVFNSLQ-DRNSVSWTVLIGG 345



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 11/243 (4%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +    + +GL     +A   IT Y++C  I  A+ LFD +   ++  W A+   Y++
Sbjct: 523 GDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQ 582

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAF 215
            G  ++A   F +M  +G K +     +VL  C H   +  G+    ++ + H       
Sbjct: 583 HGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 642

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM-NAMVSGYVQRG---LATEALNLVEEI 271
             S ++D+  + G + +AK + D+M  K    +  A++S     G   LA  A   V E+
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 702

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFC 330
            +P     ++    + S   KS D   V K   LMR KG++ +   SW  V    VH F 
Sbjct: 703 DSPDSGSYMLL-AKIYSDAGKSDDSAQVRK---LMRDKGIKKNPGYSWMEV-ENKVHVFK 757

Query: 331 NDE 333
            D+
Sbjct: 758 ADD 760


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 161/477 (33%), Positives = 266/477 (55%), Gaps = 21/477 (4%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNI----HHARMLFDEIPKTNIHRWIALTGAYA 155
           +HA ++V+GL     +  +LI  Y+   ++     +A  LF+EIPK ++     +    A
Sbjct: 31  IHAFMVVNGLMSNLSVVGELI--YSASLSVPGALKYAHKLFEEIPKPDVSICNHVLRGSA 88

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +    ++ V ++ EM  +G+  + +    VLKAC  L     G  IH  V++H F  + +
Sbjct: 89  QSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEY 148

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LI  ++ CG +  A ++FD+  +   VA ++M SGY +RG   EA+ L +E+    
Sbjct: 149 VKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMP--- 205

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
              + V WN +I+G  K  +     +LF     +  E DVV+W ++ISG V+     EA 
Sbjct: 206 -DKDQVAWNVMITGCLKCREMDSARELFD----RFTEKDVVTWNAMISGYVNCGYPKEAL 260

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH-----GCAIVMGVEGDLHVRSA 390
             FKEM   G  P   TI S+L ACA   ++  GK +H       ++   +     + +A
Sbjct: 261 SIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNA 320

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-D 449
           L+DMYAKCG I  A  +F  M +R+  TWN++I G A H + + ++E+F +M+  K   +
Sbjct: 321 LIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPN 379

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++F  V+ AC H G V+ G++ F++M++ Y I P  +HY CMVD+LGRAG L EA+  +
Sbjct: 380 EVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFV 439

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++M  EP+  VW  LLGACK +GN+EL + A + L  +  + + + +LL+++YA+ G
Sbjct: 440 ESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTG 496



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 151/377 (40%), Gaps = 86/377 (22%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G  +H +++  G      +   LI F+  C ++  A  LFD+  K +   W ++T  YA
Sbjct: 130 NGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYA 189

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +RG   EA+ +F EM            P                       K     +  
Sbjct: 190 KRGKIDEAMRLFDEM------------PD----------------------KDQVAWNVM 215

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           +   L     KC  ++ A+++FD   EKD+V  NAM+SGYV  G   EAL++ +E+    
Sbjct: 216 ITGCL-----KCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAG 270

Query: 276 VKPNVVT----------------------------------------WNTLISGFSKSGD 295
             P+VVT                                        WN LI  ++K G 
Sbjct: 271 EHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGS 330

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                ++F+ M+ +    D+ +W ++I GL  +   + + + F+EM      P   T   
Sbjct: 331 IDRAIEVFRGMKDR----DLSTWNTLIVGLALHHA-EGSVEMFEEMQRLKVWPNEVTFIG 385

Query: 356 ILPACASAANMRRGKEIHGCAIVM-GVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-E 413
           ++ AC+ +  +  G++       M  +E ++     +VDM  + G + EA    + M  E
Sbjct: 386 VILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIE 445

Query: 414 RNTVTWNSMIFGCANHG 430
            N + W +++  C  +G
Sbjct: 446 PNAIVWRTLLGACKIYG 462


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 178/560 (31%), Positives = 284/560 (50%), Gaps = 39/560 (6%)

Query: 41  VLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKIL 100
           +L C ++ S    P + GI  E    +   S  FH     +S+ ++       L++G  +
Sbjct: 27  LLWCLRTISSLANP-VEGIPFEKLETIDDHSFKFH----QFSQILQECTDAGDLRTGMSV 81

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           H  L+   +     I  KL++ Y +  +IHHA  LFD +P+ ++  +  +  A  R  Y 
Sbjct: 82  HTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYD 141

Query: 161 Q-EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
             + V ++ +M  + +K N      ++ AC  L  +      H+  ++    ++ FV SS
Sbjct: 142 ALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSS 201

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+D Y+K   +E A K F+E++E D+V+ N M+ G  +      A+ +  ++    V+ +
Sbjct: 202 LVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVD 261

Query: 280 VVTWNTLISGFSKSGD------------------QVMVSKLFQLMRAK---GV------- 311
             T  ++I   SK GD                  +  +      M +K   GV       
Sbjct: 262 GFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIF 321

Query: 312 ----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
               EP+++SWT++ISG + N  N+EA   FKEML  G      + SSILP   + AN+ 
Sbjct: 322 GSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLE 381

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +GK+IH   I      DL V +AL+DMY+KCG + +A  +F KM + + V+  +MI    
Sbjct: 382 QGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYG 441

Query: 428 NHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG   EA+E+  +M+    + D ++F   L AC H GLVE G R+F +M E + + P+ 
Sbjct: 442 QHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKR 501

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           EH+AC+VD+LGRAGRL EA   I  M  E D+ VW  LLGAC+ HG + L E +A+ + E
Sbjct: 502 EHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGACRVHGEMVLGEKSAQKIME 561

Query: 547 LEPESAANNMLLTDLYANAG 566
           L+P      +LL ++YA  G
Sbjct: 562 LQPGRHGPYVLLANIYAERG 581



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139
           ++S  + +Y     L+ GK +HA++I S       +   LI  Y++C ++  A ++F ++
Sbjct: 366 SFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKM 425

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
            K ++     +  +Y + G  +EA+ +  EM  +GL  +       L AC H   +  G 
Sbjct: 426 GKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGV 485

Query: 200 KIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQ 257
           ++  ++++ H+        + ++DM  + G + +A+   DEM +E D++    ++     
Sbjct: 486 RVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGACRV 545

Query: 258 RG---LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG---DQVMVSKLFQLMRAKGV 311
            G   L  ++   + E+   R  P V+  N     +++ G   D+VMV    + + + G+
Sbjct: 546 HGEMVLGEKSAQKIMELQPGRHGPYVLLANI----YAERGSWEDKVMVR---EKLVSHGL 598

Query: 312 EPDV-VSWTSV 321
           +  V  SW ++
Sbjct: 599 KKQVGCSWVAL 609


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 165/507 (32%), Positives = 267/507 (52%), Gaps = 32/507 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R + +G+ +HA ++  G  +    A  L+  Y +   +  A ++F+++P +++  W AL 
Sbjct: 123 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALI 182

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
                 G+   A+ +  +M   GL  N+F++ S+LKAC        G +IH  ++K +  
Sbjct: 183 SGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD 242

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV--- 268
           +D ++   L+DMY+K   ++ A KVFD M  +D++  NA++SG    G   EA ++    
Sbjct: 243 SDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGL 302

Query: 269 --EEIGTPRVKPNVVTWNTLISGFSKSGDQV-----MVSKLFQLMRAKGV---------- 311
             E +G  R     V  +T     + +  QV      +  +F      G+          
Sbjct: 303 RKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCL 362

Query: 312 -----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                        D+++ TS+I+ L      + A   F EML +G  P    +SS+L AC
Sbjct: 363 SDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 422

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           AS +   +GK++H   I      D    +ALV  YAKCG I +A   F  + ER  V+W+
Sbjct: 423 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWS 482

Query: 421 SMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI G A HG+   A+ELF +M +E    +H++ T+VL AC H GLV+  +R FN M+E 
Sbjct: 483 AMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 542

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           + I    EHY+CM+DLLGRAG+L +A E++ +M  + +  VWGALLGA + H + EL ++
Sbjct: 543 FGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKL 602

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA+ L  LEPE +  ++LL + YA++G
Sbjct: 603 AAEKLFILEPEKSGTHVLLANTYASSG 629



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 222/477 (46%), Gaps = 45/477 (9%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGA 153
           Q G  +HA  + +G      +A  L+  Y     +  AR +FDE   + N   W  L  A
Sbjct: 24  QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 83

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y +     +A+ VF EM   G++   F    V+ AC    +I  G ++H++V++  +  D
Sbjct: 84  YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 143

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F  ++L+DMY K G V+ A  +F++M + D+V+ NA++SG V  G    A+ L+ ++ +
Sbjct: 144 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 274 PRVKPNVVTWNTL---------------ISGF-----SKSGDQVMVS------------- 300
             + PNV   +++               I GF     + S D + V              
Sbjct: 204 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 263

Query: 301 --KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             K+F  M  +    D++ W ++ISG  H   +DEAF  F  +  +G      T++++L 
Sbjct: 264 AMKVFDWMSHR----DLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 319

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           + AS       +++H  A  +G   D HV + L+D Y KC  +S+A  +F++ S  + + 
Sbjct: 320 STASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIA 379

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMM 476
             SMI   +   + + AI+LF +M  RK L  D    +++L AC  +   E G+++   +
Sbjct: 380 VTSMITALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 438

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             K + M        +V    + G + +A E+  +   E  +  W A++G    HG+
Sbjct: 439 I-KRQFMSDAFAGNALVYTYAKCGSIEDA-ELAFSSLPERGVVSWSAMIGGLAQHGH 493



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 211/469 (44%), Gaps = 80/469 (17%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M  +G+  N F +P VLK    + D   G ++H++ +   FG+D FV ++L+ MY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 230 VEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP---------- 278
           ++ A++VFDE   E++ V+ N ++S YV+     +A+ +  E+    ++P          
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 279 -------------------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                                    +V T N L+  + K G   + S +F+ M     + 
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP----DS 173

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           DVVSW ++ISG V N  +  A +   +M S G  P    +SSIL ACA A     G++IH
Sbjct: 174 DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 233

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
           G  I    + D ++   LVDMYAK  F+ +A  +FD MS R+ + WN++I GC++ G  D
Sbjct: 234 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 293

Query: 434 EAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ------EKYKIMPRT 486
           EA  +F  + +E   ++  +  AVL +   +      +++  + +      + + +    
Sbjct: 294 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLI 353

Query: 487 EHY---ACMVDLLG-----RAGRLAEAYEMIKTMST-------------------EPDLF 519
           + Y   +C+ D +       +G +     MI  +S                    EPD F
Sbjct: 354 DSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 413

Query: 520 VWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
           V  +LL AC +    E  +    HL   +   ++ A N L+   YA  G
Sbjct: 414 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVY-TYAKCG 461


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 262/505 (51%), Gaps = 65/505 (12%)

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
           + + +A  +F+ I + N+  W  +   +A       A+ ++  M   GL  N +  P +L
Sbjct: 11  EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMY---------------------- 224
           K+C  L     G +IH  VLK  +  D +V +SLI MY                      
Sbjct: 71  KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130

Query: 225 ---------SKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
                    +  G +E A+ +FDE+  KD+V+ NAM+SGYV+ G   EAL L +E+    
Sbjct: 131 SYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN 190

Query: 276 VKPNVVTWNTLISGFSKSGD-----QV---------------------MVSKLFQLMRAK 309
           V+P+  T  T+IS  ++SG      QV                       SK  ++  A 
Sbjct: 191 VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETAC 250

Query: 310 GV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           G+       DV+SW  +I G  H     EA   F+EML  G  P   T+ SIL ACA   
Sbjct: 251 GLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLG 310

Query: 365 NMRRGKEIHGC--AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            +  G+ IH      + GV     +R++L+DMY+KCG I  A  +F+ M  ++   WN+M
Sbjct: 311 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAM 370

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           IFG A HG  + A ++F++M + + K D ++F  +L+AC H G+++LG+ +F  M   YK
Sbjct: 371 IFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYK 430

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P+ EHY CM+DLLG +G   EA EMI TM+ EPD  +W +LL ACK HGN+EL E  A
Sbjct: 431 ITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFA 490

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           ++L ++EP +  + +LL+++YA AG
Sbjct: 491 QNLFKIEPNNPGSYVLLSNIYATAG 515



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 182/434 (41%), Gaps = 64/434 (14%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI 99
           L+ SC+K  +        G+ I  H    ++   + L    ++  I +Y+++  L+    
Sbjct: 69  LLKSCAKLKASK-----EGLQIHGH----VLKLGYELDLYVHTSLISMYVQNERLEDAH- 118

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
              ++      R     T L+T Y     I  AR +FDEIP  ++  W A+   Y   G 
Sbjct: 119 ---KVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGN 175

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
           ++EA+ +F EM    ++ +   + +V+ A      I  G ++HS +  H FG++  +V++
Sbjct: 176 YKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNA 235

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID YSKCG +E A  +F  +  KD+++ N ++ GY    L  EAL L +E+      PN
Sbjct: 236 LIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPN 295

Query: 280 VVT------------------W-------------------NTLISGFSKSGDQVMVSKL 302
            VT                  W                    +LI  +SK GD     ++
Sbjct: 296 DVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQV 355

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F  M  K +     +W ++I G   +   + AFD F  M      P   T   +L AC+ 
Sbjct: 356 FNSMLHKSLP----AWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSH 411

Query: 363 AANMRRGKEI-----HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNT 416
           A  +  G+ I     H   I   +E        ++D+    G   EA  +   M+ E + 
Sbjct: 412 AGMLDLGRHIFRSMTHNYKITPKLEH----YGCMIDLLGHSGLFKEAEEMISTMTMEPDG 467

Query: 417 VTWNSMIFGCANHG 430
           V W S++  C  HG
Sbjct: 468 VIWCSLLKACKMHG 481


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 261/484 (53%), Gaps = 32/484 (6%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + + LI  Y +   +  AR +FD IP+ N   W  +   YA      EA  +F  M  + 
Sbjct: 150 VGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREE 209

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
              + F+  SVL A      +  G++IH L LK+   + A V ++L+ MY KCG ++ A 
Sbjct: 210 GAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDAL 269

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--- 291
           K F+   +KD +  +AM++GY Q G + EALNL   +     KP+  T+  +I+  S   
Sbjct: 270 KTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIG 329

Query: 292 --KSGDQV---------------------MVSKLFQLMRA-KGV----EPDVVSWTSVIS 323
             + G Q+                     M +K   L+ A KG     EPD+V WTS+IS
Sbjct: 330 ALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMIS 389

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G   N  N+ A   +  M  +   P   T++S+L AC+S A + +GK+IH   I  G   
Sbjct: 390 GYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSL 449

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           ++ + SAL  MYAKCG + +   +F +M  R+ +TWN+MI G + +G   +A+ELF ++ 
Sbjct: 450 EVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELR 509

Query: 444 E-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
               K D+++F  VL+AC H+GLVE G+  F MM +++ I+PR EHYACMVD+L RAG+L
Sbjct: 510 HGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKL 569

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            E  E I++ + +  + +W  LLGAC+N+ N EL   A + L EL  + ++  +LL+ +Y
Sbjct: 570 HETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIY 629

Query: 563 ANAG 566
              G
Sbjct: 630 TALG 633



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/501 (26%), Positives = 235/501 (46%), Gaps = 47/501 (9%)

Query: 73  SFHLSPAAYSERIEIYIR---DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI 129
           + +L P  +   +++ +R    + LQ GK +HAQL+ +G      +   L+  Y +C +I
Sbjct: 2   NLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSI 61

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGY--HQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
             A+++F+ I   ++  W  L   Y+++G   +   + +F  M  +    N      V  
Sbjct: 62  VKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFT 121

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           A     +   G + H+L +K S   D FV SSLI+MY K G +  A+KVFD + E++ V+
Sbjct: 122 AASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVS 181

Query: 248 MNAMVSGYVQRGLATEALNLV-----EE----------IGTPRVKPNVVTW--------- 283
              ++SGY    +A EA  L      EE          + +    P++V +         
Sbjct: 182 WATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLAL 241

Query: 284 -----------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                      N L++ + K G      K F+L   K    D ++W+++I+G      + 
Sbjct: 242 KNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDK----DDITWSAMITGYAQAGDSH 297

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA + F  M   G  P+  T   ++ AC+    +  GK+IHG ++  G E  ++  +ALV
Sbjct: 298 EALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALV 357

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-L 451
           DMYAKCG + +AR  FD + E + V W SMI G A +G  + A+ L+ +M+  + + H L
Sbjct: 358 DMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHEL 417

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +  +VL AC  +  +E G+++ +    KY         + +  +  + G L +   + + 
Sbjct: 418 TMASVLRACSSLAALEQGKQI-HAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRR 476

Query: 512 MSTEPDLFVWGALLGACKNHG 532
           M +  D+  W A++     +G
Sbjct: 477 MPSR-DIMTWNAMISGLSQNG 496



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 33/366 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H   + +GL  +  +   L+T Y +C  +  A   F+     +   W A+   YA+
Sbjct: 233 GKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQ 292

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   EA+ +F+ MH+ G K + F    V+ AC  +  +  G++IH   LK  +    + 
Sbjct: 293 AGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYF 352

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L+DMY+KCGS+  A+K FD + E DIV   +M+SGY Q G    AL L   +   R+
Sbjct: 353 MTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERI 412

Query: 277 KPNVVTWNTLISGFS-----KSGDQ-------------VMVSKLFQLMRAK--GVEP--- 313
            P+ +T  +++   S     + G Q             V +      M AK   +E    
Sbjct: 413 MPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNL 472

Query: 314 --------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                   D+++W ++ISGL  N    +A + F+E+      P   T  ++L AC+    
Sbjct: 473 VFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGL 532

Query: 366 MRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMI 423
           + RGK      +   G+   +   + +VD+ ++ G + E +   +  + +     W  ++
Sbjct: 533 VERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILL 592

Query: 424 FGCANH 429
             C N+
Sbjct: 593 GACRNY 598



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 1/231 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H   + +G        T L+  Y +C ++  AR  FD + + +I  W ++  
Sbjct: 330 ALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMIS 389

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA+ G ++ A+T++  M ++ +  +   + SVL+AC  L+ +  G++IH+  +K+ F  
Sbjct: 390 GYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSL 449

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  + S+L  MY+KCGS+E    VF  M  +DI+  NAM+SG  Q G   +AL L EE+ 
Sbjct: 450 EVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELR 509

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVI 322
               KP+ VT+  ++S  S  G        F++M  + G+ P V  +  ++
Sbjct: 510 HGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMV 560


>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
 gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
          Length = 545

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 172/498 (34%), Positives = 261/498 (52%), Gaps = 43/498 (8%)

Query: 100 LHAQLIVSGL----ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           LHA+++  GL    A L + A    T    C ++  A +L   +P   +    A+  + A
Sbjct: 28  LHARIVRLGLHNHHALLARFAAACDTL--SCPSVV-ASLLSVAVP---VRLRNAVLASLA 81

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           R    ++A+  F+ +     + + F  P +L AC   S + TG  +H+  ++     D F
Sbjct: 82  RHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHAAAIRLGVDADLF 141

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LI  Y +CG+   A+ +FD +     V+  A+V+ YV  G    A  L ++I    
Sbjct: 142 VRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILTARELFDQI---- 197

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------------------ 311
              NVV WN ++ G+ K GD     KLF  M  +                          
Sbjct: 198 PHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMGAARTLFD 257

Query: 312 ---EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
              + D+ +W+++ISG   N    EA   F E   Q  CP    I  ++ AC+   N+  
Sbjct: 258 KLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACSQLGNITL 317

Query: 369 GKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            + I G  ++  ++  ++HV + L++M AKCG +  A  LF+ MS R+  ++ SM+ G  
Sbjct: 318 ARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHC 377

Query: 428 NHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG   +A+ELF+QM  E    D+ +FT VLTAC H GLVE G+R F+MM+ +Y I+P  
Sbjct: 378 LHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNEYMIVPSG 437

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           +HYAC+V LLGR G L +AYE+IK+M  EP    WGALLG CK H +IEL +IAAK L E
Sbjct: 438 DHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIELGKIAAKKLFE 497

Query: 547 LEPESAANNMLLTDLYAN 564
           +EPE+A N + L+++YAN
Sbjct: 498 IEPENAGNYVSLSNIYAN 515


>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
 gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
 gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
 gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
          Length = 545

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 239/445 (53%), Gaps = 33/445 (7%)

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+  + AR    ++A+  F+ +     + + F  P +L AC   S + TG  +H+  ++ 
Sbjct: 75  AVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHAAAIRL 134

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               D FV ++LI  Y +CG+   A+ +FD +     V+  A+V+ YV  G    A  L 
Sbjct: 135 GVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILTARELF 194

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV----------------- 311
           ++I       NVV WN ++ G+ K GD     KLF  M  +                   
Sbjct: 195 DQI----PHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMG 250

Query: 312 ----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                     + D+ +W+++ISG   N    EA   F E   Q  CP    I  ++ AC+
Sbjct: 251 AARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACS 310

Query: 362 SAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
              N+   + I G  ++  ++  ++HV + L++M AKCG +  A  LF+ MS R+  ++ 
Sbjct: 311 QLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYC 370

Query: 421 SMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           SM+ G   HG   +A+ELF+QM  E    D+ +FT VLTAC H GLVE G+R F+MM+ +
Sbjct: 371 SMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNE 430

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y I+P  +HYAC+V LLGR G L +AYE+IK+M  EP    WGALLG CK H +IEL +I
Sbjct: 431 YMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIELGKI 490

Query: 540 AAKHLSELEPESAANNMLLTDLYAN 564
           AAK L E+EPE+A N + L+++YAN
Sbjct: 491 AAKKLFEIEPENAGNYVSLSNIYAN 515



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 133/283 (46%), Gaps = 6/283 (2%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           D  ++ G +  A+ +   +   T  A T LI  Y    N+  AR LFD++   ++  W  
Sbjct: 210 DGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDRDLFAWST 269

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +    A+ GY  EA+ +F+E   Q +  +  VI  ++ AC  L +I     I   ++ + 
Sbjct: 270 MISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACSQLGNITLARWIEGYIMIYP 329

Query: 210 FG-TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
               +  V++ LI+M +KCG++E+A  +F+ M  +D+ +  +M+ G+   G A++A+ L 
Sbjct: 330 IDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELF 389

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVH 327
            ++    + P+   +  +++  S +G      + F +M+ +  + P    +  ++S L  
Sbjct: 390 SQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNEYMIVPSGDHYACLVSLLGR 449

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
                +A++  K M  +   P      ++L  C    ++  GK
Sbjct: 450 FGMLRDAYELIKSMPGE---PHPGAWGALLGGCKFHCDIELGK 489


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 251/468 (53%), Gaps = 41/468 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA ++   L++   + TK++       ++ +A M+F ++   N+  + A+   Y   
Sbjct: 24  KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83

Query: 158 GYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             H  A+TVF++M   +    + F  P V+K+C  L     G+++H+ V K    T A  
Sbjct: 84  HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAIT 143

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LIDMY+KCG +  A +V++EM E+D                                
Sbjct: 144 ENALIDMYTKCGDMSGAYQVYEEMTERD-------------------------------- 171

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
               V+WN+LISG  + G      ++F  M  +     +VSWT++I+G     C  +A  
Sbjct: 172 ---AVSWNSLISGHVRLGQMKSAREVFDEMPCR----TIVSWTTMINGYARGGCYADALG 224

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F+EM   G  P   ++ S+LPACA    +  GK IH  +   G   +  V +ALV+MYA
Sbjct: 225 IFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYA 284

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTA 455
           KCG I EA  LF++M E++ ++W++MI G ANHG    AI +F  M++     + ++F  
Sbjct: 285 KCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVG 344

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           VL+AC H GL   G R F++M+  Y + P+ EHY C+VDLLGR+G++ +A + I  M  +
Sbjct: 345 VLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQ 404

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           PD   W +LL +C+ H N+E+A +A + L +LEPE + N +LL ++YA
Sbjct: 405 PDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYA 452



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 143/302 (47%), Gaps = 35/302 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQN---------------------------- 128
           G+ +HA +   G          LI  YT+C +                            
Sbjct: 125 GQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVR 184

Query: 129 ---IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
              +  AR +FDE+P   I  W  +   YAR G + +A+ +F EM + G++ +   + SV
Sbjct: 185 LGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISV 244

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L AC  L  +  G+ IH    K  F  +A V ++L++MY+KCG +++A  +F++M+EKD+
Sbjct: 245 LPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDV 304

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           ++ + M+ G    G    A+ + E++    V PN VT+  ++S  + +G      + F +
Sbjct: 305 ISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDV 364

Query: 306 MRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           MR    +EP +  +  ++  L  +   ++A DT  +M  Q   P S T +S+L +C    
Sbjct: 365 MRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQ---PDSRTWNSLLSSCRIHH 421

Query: 365 NM 366
           N+
Sbjct: 422 NL 423


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 165/495 (33%), Positives = 261/495 (52%), Gaps = 49/495 (9%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + +  I  Y E   +  AR +FD   + N   W  + G Y +     EA+ +F    +Q 
Sbjct: 257 VVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLF----VQV 312

Query: 175 LKQNIFVIPSV-----LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           ++   FV+  V     L A   L  +  G ++H+ +LK S      +++++I MYS+CGS
Sbjct: 313 MESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGS 372

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS- 288
           +  + KVF  M+E+D+V  N MVS +VQ GL  E L LV  +       + VT   L+S 
Sbjct: 373 IGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSL 432

Query: 289 ---------------------------------GFSKSGDQVMVSKLFQLMRAKGVEPDV 315
                                             ++KSG      +LF+  +    + D 
Sbjct: 433 ASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDMYAKSGLITTAQQLFE--KNSDYDRDE 490

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
            +W ++I+G   N  ++E F  F++M+ Q   P + T++SILPAC     +  GK+IHG 
Sbjct: 491 ATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGF 550

Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
           AI   +  ++ V +AL+DMY+K G I+ A  +F +  E+N+VT+ +MI     HG  + A
Sbjct: 551 AIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERA 610

Query: 436 IELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
           + LF+ M     K D ++F A+L+AC + GLV+ G R+F  M+ +YKI P  EHY C+ D
Sbjct: 611 LSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVAD 670

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLF-VWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           +LGR GR+ EAYE +K +  E + F +WG+LLGAC+ HG  EL ++ A  L E+E  S+ 
Sbjct: 671 MLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSL 730

Query: 554 N--NMLLTDLYANAG 566
              ++LL+++YA  G
Sbjct: 731 TGYHVLLSNIYAAEG 745



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 202/446 (45%), Gaps = 59/446 (13%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC-------------Q 127
           +S  ++   + R+L+ GK LH  ++ S       +   L+  Y+ C              
Sbjct: 107 FSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFN 166

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           N    R +FD + K N+  W  +   Y +     EA  +F  M   G++       +V  
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 188 ACGHLSDIGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           A   +SD      ++ LV+K    F  D FVVSS I MY++ G V+ A+++FD  +E++ 
Sbjct: 227 AVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 246 VAMNAMVSGYVQRGLATEALNLVEE----------------------------------- 270
              N M+ GYVQ     EA++L  +                                   
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHA 346

Query: 271 -IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            I        VV  N +I  +S+ G      K+F  M    +E DVV+W +++S  V N 
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNM----LERDVVTWNTMVSAFVQNG 402

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
            +DE       M  QGF   S T++++L   ++  +   GK+ H   I  G++ +  + S
Sbjct: 403 LDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDS 461

Query: 390 ALVDMYAKCGFISEARTLFDKMS--ERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
            L+DMYAK G I+ A+ LF+K S  +R+  TWN+MI G   +G  +E   +F +M E+  
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRL 472
           + + ++  ++L AC  +G + LG+++
Sbjct: 522 RPNAVTLASILPACNPMGTIGLGKQI 547



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 194/453 (42%), Gaps = 52/453 (11%)

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKA 188
           H A  LFD IP+     W  +   +       +A+  +  M      K + +   S LKA
Sbjct: 54  HQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKA 113

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC-------------GSVEKAKK 235
           C     +  G+ +H  VL+  FG+   V +SL++MYS C              + +  ++
Sbjct: 114 CAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRR 173

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           VFD M ++++VA N M+S YV+     EA  +   +    ++P  V++  +     +  D
Sbjct: 174 VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSD 233

Query: 296 QVMVSKLFQLMRAKG---------------------------------VEPDVVSWTSVI 322
               + L+ L+   G                                 +E +   W ++I
Sbjct: 234 YDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 323 SGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
            G V N C  EA D F +++ S+ F     T  S L A +    +  G+++H   +    
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSST 353

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
              + + +A++ MY++CG I  +  +F  M ER+ VTWN+M+     +G  DE + L   
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFA 413

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M+++   +D ++ TA+L+   ++   E+G++    +          + Y  ++D+  ++G
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSY--LIDMYAKSG 471

Query: 501 RLAEAYEMI-KTMSTEPDLFVWGALLGACKNHG 532
            +  A ++  K    + D   W A++     +G
Sbjct: 472 LITTAQQLFEKNSDYDRDEATWNAMIAGYTQNG 504



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 201/479 (41%), Gaps = 70/479 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ LHA ++ S       I   +I  Y+ C +I  +  +F  + + ++  W  +  A
Sbjct: 338 LELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF--- 210
           + + G   E + +   M  QG   +   + ++L    +L     G++ H+ +++H     
Sbjct: 398 FVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE 457

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLV 268
           G D++    LIDMY+K G +  A+++F++    ++D    NAM++GY Q GL+ E   + 
Sbjct: 458 GMDSY----LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVF 513

Query: 269 EEIGTPRVKPNVVTWNTL---------------ISGF--------------------SKS 293
            ++    V+PN VT  ++               I GF                    SKS
Sbjct: 514 RKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKS 573

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G       +F    A+ +E + V++T++IS    +   + A   F  ML  G  P S T 
Sbjct: 574 GAITYAENVF----AETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTF 629

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA------LVDMYAKCGFISEARTL 407
            +IL AC+ A     G    G  I   +E +  ++ +      + DM  + G + EA   
Sbjct: 630 VAILSACSYA-----GLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEF 684

Query: 408 FDKMSERNTV--TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH--- 462
              + E       W S++  C  HG  +    + N++ E +K   L+   VL +  +   
Sbjct: 685 VKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAE 744

Query: 463 -----VGLVELGQRLFNMMQEK-YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
                V  V    R   +M+E     +    H  C +    +  + AE Y+M++ ++ E
Sbjct: 745 GNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAME 803



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 139/286 (48%), Gaps = 10/286 (3%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHR----W 147
           R+ + GK  HA LI  G+ +   + + LI  Y +   I  A+ LF++   ++  R    W
Sbjct: 437 RSQEIGKQAHAYLIRHGI-QFEGMDSYLIDMYAKSGLITTAQQLFEK--NSDYDRDEATW 493

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            A+   Y + G  +E   VF +M  Q ++ N   + S+L AC  +  IG G++IH   ++
Sbjct: 494 NAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIR 553

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                + FV ++L+DMYSK G++  A+ VF E +EK+ V    M+S Y Q G+   AL+L
Sbjct: 554 CFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSL 613

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLV 326
              +    +KP+ VT+  ++S  S +G      ++FQ M R   ++P    +  V   L 
Sbjct: 614 FHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLG 673

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
                 EA++  K +  +G   T     S+L AC        GK +
Sbjct: 674 RVGRVVEAYEFVKGLGEEG--NTFGIWGSLLGACRIHGEFELGKVV 717


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 261/472 (55%), Gaps = 13/472 (2%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HAQ+ +  L   +++ T+LI+     +++ +A  +F      N+  + AL    A    
Sbjct: 59  IHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSR 118

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            + +V+ F  M    ++ +   +P VLK+   L D+G G  +H  V+K     D+FV  S
Sbjct: 119 FEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVS 178

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKD----IVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           L+DMY K G +    ++FDE  +++    I+  N +++G  + G  ++A +L E +    
Sbjct: 179 LVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMP--- 235

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
            + N  +WN+LI+GF ++GD     +LF  M     E +VVSWT++I+G   N  +++A 
Sbjct: 236 -ERNAGSWNSLINGFVRNGDLDRARELFVQMP----EKNVVSWTTMINGFSQNGDHEKAL 290

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F  ML +G  P   T+ S L AC     ++ G+ IH      G + +  + +ALVDMY
Sbjct: 291 SMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMY 350

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           AKCG I  A  +F +   ++ +TW+ MI+G A HG  D+A++ F +M+      D + F 
Sbjct: 351 AKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFL 410

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           A+LTAC H G V+ G   F  M+  Y I P  +HY  +VDLLGRAGRL EA   I++M  
Sbjct: 411 AILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPI 470

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            PD  +WGAL  AC+ H NIE+AE+ A+ L +LEP+   + + L+++YA  G
Sbjct: 471 NPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVG 522



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 134/337 (39%), Gaps = 70/337 (20%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE------------------ 138
           G+ LH  ++  GL   + +   L+  Y +   +     LFDE                  
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLIN 216

Query: 139 -----------------IPKTNIHRWIALTGAYARRG----------------------- 158
                            +P+ N   W +L   + R G                       
Sbjct: 217 GCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTM 276

Query: 159 --------YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
                    H++A+++F  M  +G++ N   + S L AC  +  +  GE+IH+ +  + F
Sbjct: 277 INGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGF 336

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +  + ++L+DMY+KCG+++ A +VF E   KD++  + M+ G+   G   +AL    +
Sbjct: 337 QLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVK 396

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNF 329
           + +  + P+ V +  +++  S SG+       F+ MR    +EP +  +T ++  L    
Sbjct: 397 MKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAG 456

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
             DEA    + M      P      ++  AC +  N+
Sbjct: 457 RLDEALSFIQSM---PINPDFVIWGALFCACRAHKNI 490



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 7/241 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G+ +H  L  +G      I T L+  Y +C NI  A  +F E    ++  W  +  
Sbjct: 320 ALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIW 379

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A  G   +A+  F +M   G+  +  +  ++L AC H  ++  G     S+ L +S  
Sbjct: 380 GWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIE 439

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGLATEALNLVE 269
                 + ++D+  + G +++A      M +  D V   A+       + +    L   +
Sbjct: 440 PTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEK 499

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV-ISGLVHN 328
            +      P   ++  L + ++  G    V ++  LM+ +GVE D   W+ + + G VH+
Sbjct: 500 LLQLEPKHPG--SYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKD-PGWSYIEVEGQVHS 556

Query: 329 F 329
           F
Sbjct: 557 F 557


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 175/514 (34%), Positives = 275/514 (53%), Gaps = 47/514 (9%)

Query: 94  LQSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L+ G++LHA+L++SG A   T +A  LIT Y+ C ++  A  LF  +P+ N   W  L  
Sbjct: 36  LRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVS 95

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             ++   H +A+  F  M   G+    F + S  +A   L     G ++H + ++  F T
Sbjct: 96  GLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDT 155

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG-----------LA 261
           + FV S+L DMYSKCG + +A +VFD+M +KD VA  AM+ GY + G           + 
Sbjct: 156 ELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMK 215

Query: 262 TEALNLVEE-------------------------IGTPRVKPNVVTWNTLISGFSKSGDQ 296
            E L   ++                         +     +  V   N LI  ++KS D 
Sbjct: 216 REGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDV 275

Query: 297 VMVSKLFQLMRAKGVEP---DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
              S++ +      ++P   +VVS TS+I G +   C +EA   + E+  QG  P   T 
Sbjct: 276 ESASRVLK------IDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTF 329

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           SS++  CA  A + +G ++H   I   +  D  V S LVDMY KCG IS +  LF+++  
Sbjct: 330 SSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEY 389

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           R  + WN++I   A HG+  EAI+ F++M     + +H++F ++LTAC H GLV+ G + 
Sbjct: 390 RTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKY 449

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F  M+E + I P+ EHY+C++D  GRAGRL EAY+ I  M  +P+ + W +LLGAC+  G
Sbjct: 450 FYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRG 509

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + EL E+AA++L +LEP +   ++ L+ +YA+ G
Sbjct: 510 SKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLG 543



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 169/391 (43%), Gaps = 45/391 (11%)

Query: 182 IPSVLKACGHLSDIGTGEKIHS-LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           + S+L++CG   D+  G  +H+ LVL  +     F+ + LI MYS C  +  A ++F  M
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--------------------- 279
             ++ V+   +VSG  Q  +  +AL     +    V P                      
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGA 142

Query: 280 --------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                         +   + L   +SK G      ++F  M  K    D V+WT++I G 
Sbjct: 143 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQK----DAVAWTAMIDGY 198

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATI-SSILPACASAANMRRGKEIHGCAIVMGVEGD 384
             N   + A  +F++M  +G       +  S+L A     +    K IH C    G E +
Sbjct: 199 AKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELE 258

Query: 385 LHVRSALVDMYAKCGFI-SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           + VR+AL+DMYAK   + S +R L       N V+  SMI G       +EA+ ++ ++ 
Sbjct: 259 VAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELR 318

Query: 444 ERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
            +  + +  +F++++  C    L+E G +L   +  K  ++  +   + +VD+ G+ G +
Sbjct: 319 RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVI-KTDLIRDSFVGSTLVDMYGKCGLI 377

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + + ++   +    D+  W A++     HG+
Sbjct: 378 SLSMQLFNEIEYRTDI-AWNAVINVFAQHGH 407



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 5/217 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  LHAQ+I + L R + + + L+  Y +C  I  +  LF+EI       W A+   
Sbjct: 342 LEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINV 401

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFGT 212
           +A+ G+ +EA+  F  M   G++ N     S+L AC H   +  G K  +S+   H    
Sbjct: 402 FAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEP 461

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
                S +ID Y + G +++A K   EM ++ +     +++     RG  ++ L  V   
Sbjct: 462 KEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRG--SKELGEVAAQ 519

Query: 272 GTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMR 307
              +++P     +  +SG ++  G    V  + +LMR
Sbjct: 520 NLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMR 556


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 173/542 (31%), Positives = 279/542 (51%), Gaps = 76/542 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLI-----TFYTECQNIHHARMLFDEIPKTNIHRW 147
           +++  K +HA +++ GL+ L  I  + I      +        H+ +   + P +    W
Sbjct: 16  SVKQAKQVHALILIHGLSHLEPILARQILISASNYSATVAQYVHSVLHHSKSPDS--FSW 73

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
                   + G  +EA  ++ +M   GL    F + S LKAC  ++    G  IH  V K
Sbjct: 74  ACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQK 133

Query: 208 HSF---GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
             F   G   +V ++L+D Y K G +E A+K+FDEM E+++V+ N+M++GY++ G    A
Sbjct: 134 FGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVA 193

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------- 311
             + +EI     + +V++WN++ISG++++GD    S LFQ M  +               
Sbjct: 194 QRVFDEI----PQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEF 249

Query: 312 --------------EPDVVSWTSVISGL-----VHNFCN--------------------- 331
                         + + VSW ++ISG      V + C                      
Sbjct: 250 GDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYA 309

Query: 332 -----DEAFDTFKEMLSQ--GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
                +EA + F  ML+      P   T++S++ AC+   ++R G  I      +G+E D
Sbjct: 310 QNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMD 369

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
            H+ +AL+D+YAKCG I +A  LF  + +++ V + +MI GC  +G   +AI+LF++M +
Sbjct: 370 GHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVD 429

Query: 445 RKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
            +   + ++F  +LTA  H GLVE G R F  M+ KY ++P  +HY  MVDL GRAGRL 
Sbjct: 430 AQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDHYGIMVDLFGRAGRLQ 488

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA E+IK+M  +P   VWGALL AC+ H N+E  EIAA+H  ELEP++     LL+++YA
Sbjct: 489 EALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYA 548

Query: 564 NA 565
           + 
Sbjct: 549 SG 550


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 230/418 (55%), Gaps = 41/418 (9%)

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           S+L+AC +  D+  G  +H   +K          ++L+DMY+KCG ++ A  VFD M  +
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT--------------------- 282
            +V   ++++ Y + GL+ EA+ L  E+    V P++ T                     
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 283 --------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                          N L+  ++K G     + +F  M  K    D++SW ++I G   N
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK----DIISWNTMIGGYSKN 178

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
              +EA   F +M+ +   P   T++ ILPACAS A++ RGKE+HG  +  G   D  V 
Sbjct: 179 SLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA 237

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
           +ALVDMY KCG    AR LFD +  ++ +TW  MI G   HG+ + AI  FN+M +   +
Sbjct: 238 NALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIE 297

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            D +SF ++L AC H GL++ G R FN+MQ++  + P+ EHYAC+VDLL R+G+LA AY+
Sbjct: 298 PDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYK 357

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            IK+M  EPD  +WGALL  C+ H +++LAE  A+H+ ELEPE+    +LL + YA A
Sbjct: 358 FIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEA 415



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 176/374 (47%), Gaps = 50/374 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H   + + +   T     L+  Y +C  +  A ++FD +    +  W +L  AYAR
Sbjct: 17  GRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAR 76

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G   EA+ +FHEM  +G+  +IF I +VL AC     +  G+ +H+ + ++   ++ FV
Sbjct: 77  EGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFV 136

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY+KCGS+E A  VF EM  KDI++ N M+ GY +  L  EAL+L  ++    +
Sbjct: 137 CNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEM 195

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
           KP+  T                                    N L+  + K G  V+   
Sbjct: 196 KPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARL 255

Query: 302 LFQLMRAKGVEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           LF ++  K    D+++WT +I+G  +H F N+ A  TF EM   G  P   +  SIL AC
Sbjct: 256 LFDMIPTK----DLITWTVMIAGYGMHGFGNN-AITTFNEMRQAGIEPDEVSFISILYAC 310

Query: 361 ASAANMRRGKEIHGCAIVM----GVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
           + +  +  G        VM     V+  L   + +VD+ A+ G ++ A      M  E +
Sbjct: 311 SHSGLLDEGWRFFN---VMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPD 367

Query: 416 TVTWNSMIFGCANH 429
              W +++ GC  H
Sbjct: 368 ATIWGALLSGCRIH 381



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 136/269 (50%), Gaps = 5/269 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L++GK +H  +  + +     +   L+  Y +C ++  A  +F E+P  +I  W  + G
Sbjct: 114 SLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIG 173

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y++     EA+++F +M ++ +K +   +  +L AC  L+ +  G+++H  +L++ F +
Sbjct: 174 GYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFS 232

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V ++L+DMY KCG    A+ +FD +  KD++    M++GY   G    A+    E+ 
Sbjct: 233 DQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMR 292

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCN 331
              ++P+ V++ +++   S SG      + F +M+ +  V+P +  +  ++  L  +   
Sbjct: 293 QAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKL 352

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPAC 360
             A+   K M  +   P +    ++L  C
Sbjct: 353 AMAYKFIKSMPIE---PDATIWGALLSGC 378


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 173/525 (32%), Positives = 261/525 (49%), Gaps = 81/525 (15%)

Query: 119 LITFYTECQNIHHARMLFDEIP-----KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           +I+ Y +      A   F E+      K N+  W AL     + GY  EA++VF +M ++
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVEK 232
           G+K N   I S + AC +LS +  G +IH   +K     +D  V +SL+D Y+KC SVE 
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 233 AKKVF-------------------------------DEM----VEKDIVAMNAMVSGYVQ 257
           A++ F                                EM    +E DI+  N +V+G+ Q
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 258 RGLATEALNLVEEIGTPRVKPNVVT----------------------------------- 282
            G    AL   + + +  + PN  T                                   
Sbjct: 477 YGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGV 536

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
            + LIS +S      +   +F  +  +    DVV W S+IS    +  +  A D  +EM 
Sbjct: 537 GSALISMYSGCDSLEVACSVFSELSTR----DVVVWNSIISACAQSGRSVNALDLLREMN 592

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
                  + T+ S LPAC+  A +R+GKEIH   I  G++    + ++L+DMY +CG I 
Sbjct: 593 LSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQ 652

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACC 461
           ++R +FD M +R+ V+WN MI     HG+  +A+ LF Q      K +H++FT +L+AC 
Sbjct: 653 KSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 712

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
           H GL+E G + F MM+ +Y + P  E YACMVDLL RAG+  E  E I+ M  EP+  VW
Sbjct: 713 HSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVW 772

Query: 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           G+LLGAC+ H N +LAE AA++L ELEP+S+ N +L+ ++Y+ AG
Sbjct: 773 GSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 817



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 228/389 (58%), Gaps = 7/389 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HAQL+V+G+     + ++L+  Y +   +  AR +FD++ + N+  W A+   
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G ++E + +F+ M  +G++ + FV P V KAC  L +   G+ ++  +L   F  +
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 224

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           + V  S++DM+ KCG ++ A++ F+E+  KD+   N MVSGY  +G   +AL  + ++  
Sbjct: 225 SCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL 284

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA-KGVEPDVVSWTSVISGLVHNFCND 332
             VKP+ VTWN +ISG+++SG     SK F  M   K  +P+VVSWT++I+G   N  + 
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG-CAIVMGVEGDLHVRSAL 391
           EA   F++M+ +G  P S TI+S + AC + + +R G+EIHG C  V  ++ DL V ++L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDH 450
           VD YAKC  +  AR  F  + + + V+WN+M+ G A  G  +EAIEL ++M+ +  + D 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 451 LSFTAVLTACCHVG----LVELGQRLFNM 475
           +++  ++T     G     +E  QR+ +M
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSM 493



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 150/270 (55%), Gaps = 4/270 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L+ GK +H  ++ + +   T + + LI+ Y+ C ++  A  +F E+   ++  W ++ 
Sbjct: 513 RNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSII 572

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A A+ G    A+ +  EM++  ++ N   + S L AC  L+ +  G++IH  +++    
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           T  F+++SLIDMY +CGS++K++++FD M ++D+V+ N M+S Y   G   +A+NL ++ 
Sbjct: 633 TCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQF 692

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
            T  +KPN +T+  L+S  S SG      K F++M+ +  ++P V  +  ++  L     
Sbjct: 693 RTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            +E  +  ++M    F P +A   S+L AC
Sbjct: 753 FNETLEFIEKM---PFEPNAAVWGSLLGAC 779



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 14/220 (6%)

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +SIL  C    N+R G ++H   +V GV+    + S L+++Y + G + +AR +FDKMSE
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           RN  +W +++      G  +E I+LF  M  E  + DH  F  V  AC  +    +G+ +
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 473 FNMMQEKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           ++     Y +    E  +C    ++D+  + GR+  A    + +  + D+F+W  ++   
Sbjct: 213 YD-----YMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSGY 266

Query: 529 KNHGNIE--LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            + G  +  L  I+   LS ++P+    N +++  YA +G
Sbjct: 267 TSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-YAQSG 305


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 237/451 (52%), Gaps = 41/451 (9%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+  Y+E  ++  AR + D +P+ N   W  L   + +RG   EAV ++ +M   G +
Sbjct: 320 TALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCR 379

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            NI    SVL AC  L D+  G +IH+  LK    T+ FV SSLIDMY KC     A+ +
Sbjct: 380 PNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTI 439

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FD + EK                                   N+V WN+L SG+S +G  
Sbjct: 440 FDTLPEK-----------------------------------NIVCWNSLASGYSYNGKM 464

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           V    LF+ M A+    ++ SW ++ISG   N    +A  +F  ML+ G  P   T SS+
Sbjct: 465 VEAMYLFKKMPAR----NLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSV 520

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+  ++  GK  H   I +G+E  + + +AL DMYAK G +  ++ +F +M ERN 
Sbjct: 521 LLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERND 580

Query: 417 VTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           VTW +MI G A +G  +E+I LF + M      +  +F A+L AC H GLVE     F  
Sbjct: 581 VTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEK 640

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQ  + I P+ +HY CMVD+L RAGRL EA  ++    ++ +   W ALL AC  + N E
Sbjct: 641 MQ-AWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEE 699

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + E AAK L EL  ++ A  +LL+++YA+ G
Sbjct: 700 IGERAAKRLHELGKDNTAGYVLLSNMYASCG 730



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 41/354 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G I  A+ +  G+   + ++ T ++    +   +  A  L+++ P  ++  + A   
Sbjct: 163 VKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATIS 222

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            + R   H  A+ VF +M   G++ N      ++KAC    + G    I    +K +F  
Sbjct: 223 GFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFE 282

Query: 213 DAF-VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  V +SLI +Y + G    A+KVFDEM  KD+V+  A++  Y + G    A  +++ +
Sbjct: 283 SSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAM 342

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + N V+W TLI+   + G+     KL+  M A G  P++                
Sbjct: 343 P----ERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNI---------------- 382

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
                              +  SS+L ACA+  ++R G  IH  ++ MG   ++ V S+L
Sbjct: 383 -------------------SCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSL 423

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           +DMY KC    +A+T+FD + E+N V WNS+  G + +G   EA+ LF +M  R
Sbjct: 424 IDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPAR 477



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 43/346 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA+ +  G +    +++ LI  Y +C+    A+ +FD +P+ NI  W +L   
Sbjct: 398 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASG 457

Query: 154 YARRGYHQEAVTVFHEMH----------IQGLKQN-IFV--------------IP----- 183
           Y+  G   EA+ +F +M           I G  QN  FV              +P     
Sbjct: 458 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITF 517

Query: 184 -SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            SVL AC +L  + TG+  H+  +K       F+ ++L DMY+K G ++ +K++F +M E
Sbjct: 518 SSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPE 577

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           ++ V   AM+ G  + GLA E++ L E++    + PN  T+  L+   S  G        
Sbjct: 578 RNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHY 637

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ M+A G+ P    +T ++  L       EA     +  S+     + + +++L AC +
Sbjct: 638 FEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKS---EANSWAALLSACNT 694

Query: 363 AAN----MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
             N     R  K +H        + +      L +MYA CG   +A
Sbjct: 695 YKNEEIGERAAKRLHELG-----KDNTAGYVLLSNMYASCGRWKDA 735



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 109/249 (43%), Gaps = 14/249 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L +GK+ HA+ I  G+     I T L   Y +  ++  ++ +F ++P+ N   W A+  
Sbjct: 529 SLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQ 588

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G  +E++ +F +M   G+  N     ++L AC H   +   + IH      ++G 
Sbjct: 589 GLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLV--EQAIHYFEKMQAWGI 646

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEK----DIVAMNAMVSGYVQRGLATEALN 266
                  + ++D+ ++ G + +A+ +  +   K       A+ +  + Y    +   A  
Sbjct: 647 SPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAK 706

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSWTSVISGL 325
            + E+G    K N   +  L + ++  G     +++  LM+   ++ D   SW  V  G 
Sbjct: 707 RLHELG----KDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQV-RGQ 761

Query: 326 VHNFCNDEA 334
            H F + EA
Sbjct: 762 YHAFFSWEA 770


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 179/563 (31%), Positives = 285/563 (50%), Gaps = 71/563 (12%)

Query: 73  SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           +F L    +   ++  I  R L +GK LHA    S +   T ++      Y++C ++H+A
Sbjct: 4   TFPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNA 63

Query: 133 -------------------------------RMLFDEIPKTNIHRWIALTGAYARRGYHQ 161
                                          R +FDEIP+ +I  +  L  AYA RG  +
Sbjct: 64  QTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECR 123

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
            A+ +F E+       + F +  V+ ACG   D+G   ++H  V+   +   A V ++++
Sbjct: 124 PALRLFAEVRELRFGLDGFTLSGVIIACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVL 181

Query: 222 DMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
             YS+ G + +A++VF EM E   +D V+ NAM+    Q     EA+ L  E+    +K 
Sbjct: 182 ACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKV 241

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE-------------------------- 312
           ++ T  ++++ F+   D V   +   +M   G                            
Sbjct: 242 DMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKV 301

Query: 313 ------PDVVSWTSVISGLV-HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 PD+V W ++ISG   +   +++    F+EM   GF P   +   +  AC++ ++
Sbjct: 302 FEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSS 361

Query: 366 MRRGKEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
              GK++H  AI   +  + + V +ALV MY+KCG + +AR +FD M E N V+ NSMI 
Sbjct: 362 PSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIA 421

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A HG   E++ LF  M ++    + ++F AVL+AC H G VE GQ+ FNMM+E+++I 
Sbjct: 422 GYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIE 481

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P  EHY+CM+DLLGRAG+L EA  +I+TM   P    W  LLGAC+ HGN+ELA  AA  
Sbjct: 482 PEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANE 541

Query: 544 LSELEPESAANNMLLTDLYANAG 566
             +LEP +AA  ++L+++YA+A 
Sbjct: 542 FLQLEPYNAAPYVMLSNMYASAA 564


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 161/505 (31%), Positives = 284/505 (56%), Gaps = 38/505 (7%)

Query: 70  ISRSFHLSPAA-YSERIEIYIRD--RALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
           +S+  HLS ++ ++++  I++    +++Q  K +  Q++ +G  +      K +   T+ 
Sbjct: 18  LSKPLHLSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDP 77

Query: 127 Q--NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
              N+H+A  +F+ I    +  +  +  A+ + G  ++AV +F ++  +GL  + F  P 
Sbjct: 78  SIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           V KA G L ++  GEK++  V+K     D +V +SL+DMY++ G V+  ++VF+EM ++D
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD 197

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +V+ N ++SGYV+     +A+++  +I        V+ W +++SG+   G      +LF+
Sbjct: 198 VVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFE 257

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
               +    DVV WT++I+G V     D+A   F+EM  +   P   T+ ++L       
Sbjct: 258 RSPVR----DVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLT------ 307

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
                              D  V +AL++MYAKCGFI ++  +F+ + E++T +W S+I 
Sbjct: 308 -------------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIIC 348

Query: 425 GCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A +G   +A+ELF +M +   K D ++F  VL+AC H GLVE G++ F  M   Y+I 
Sbjct: 349 GLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIE 408

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIK---TMSTEPDLFVWGALLGACKNHGNIELAEIA 540
           P+ EHY C++DLLGRAG+L EA E+I+    ++ E  + ++GALL AC+ HGN+E+ E  
Sbjct: 409 PKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERV 468

Query: 541 AKHLSELEPESAANNMLLTDLYANA 565
           AK L  +E   ++ + LL ++YA+A
Sbjct: 469 AKRLVGIESGDSSVHTLLANIYASA 493


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 259/475 (54%), Gaps = 47/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA +I   L++ + + TK++    + +++ +A +LF ++ + N + + A+  A+   
Sbjct: 31  KSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHN 90

Query: 158 GYHQEAVTVFHEM-------HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             +  A+  + EM           +  + F  P V+K+C  L     G+++H+ + K   
Sbjct: 91  KVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGP 150

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++  + ++LIDMY+KC S+  A KVFD MVE+D                          
Sbjct: 151 KSNITMENALIDMYTKCASLLDAHKVFDGMVERD-------------------------- 184

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330
                     ++WN++ISG    G       LF LM  +     +VSWT++ISG      
Sbjct: 185 ---------AISWNSIISGHVGVGQMRKAGALFDLMPYR----TIVSWTAMISGYTRLGS 231

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             +A   F++M   G  P   +I S+LPACA    +  GK IH      G+     + +A
Sbjct: 232 YADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNA 291

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
           L++MY+KCG I +A  LFD+MS+ + ++W++MI G ANHG   EAIELF +M++ K + +
Sbjct: 292 LMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPN 351

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++F  +L+AC H G    G   F+ M + Y I P  EHY C+VD+LGRAGRL++A ++I
Sbjct: 352 GITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVI 411

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           + M  +PD  +WG+LL +C+ H N+++A IA +HL ELEP+   N +LL+++YA+
Sbjct: 412 EKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYAD 466



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 137/278 (49%), Gaps = 5/278 (1%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           D   +   +L A  +  G+     I+   +I+ +     +  A  LFD +P   I  W A
Sbjct: 162 DMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTA 221

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   Y R G + +A+ VF +M I G++ +   I SVL AC  L  +  G+ IH    ++ 
Sbjct: 222 MISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNG 281

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
                 + ++L++MYSKCG + +A ++FD+M + D+++ + M+ G    G A EA+ L +
Sbjct: 282 LLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFK 341

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHN 328
            +   +++PN +T+  L+S  + +G        F  M +   +EP+V  +  ++  L   
Sbjct: 342 RMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRA 401

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
               +A D  ++M  +   P S    S+L +C + +N+
Sbjct: 402 GRLSQALDVIEKMPMK---PDSKIWGSLLSSCRTHSNL 436


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 164/505 (32%), Positives = 270/505 (53%), Gaps = 77/505 (15%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           ++LH  +I         ++T L+  Y  C ++  AR LFDE+P+ NI  W  +   Y++ 
Sbjct: 218 RMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKA 277

Query: 158 GYH-------------------------------QEAVTVFHEMHIQGLKQNIFVIPSVL 186
           G+                                 EA+ ++  M   G + N  ++  ++
Sbjct: 278 GFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLI 337

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
             CG    +  G+++ S V+K  F    F+ S++I +Y+ CG + +A   F         
Sbjct: 338 SGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQF--------- 388

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--DQVMVSKLFQ 304
                                   IG+   K NV +WN LI+G+ ++   D+ M  +LF 
Sbjct: 389 -----------------------RIGS---KENVASWNALIAGYVRNRMIDRAM--ELFN 420

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M     E DV SW+++ISG   N   + A + F +M++ G  P   T+ S+L A A++ 
Sbjct: 421 EMP----ERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSG 476

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVT-WNSM 422
            ++ G+  H       +    ++ +A++DMYAKCG I+ A  +F ++ E+ +TV+ WN++
Sbjct: 477 TLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAI 536

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A HG+ + ++++F+ +E R  KL+ ++F  VLTACCHVGLVE G+R F  M+ ++ 
Sbjct: 537 ICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHS 596

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  +HY CMVDLLGRAGRL EA EMI++M  + D+ +WG LL AC+ HGN+++ E AA
Sbjct: 597 IDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGNVDVGERAA 656

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           ++L+ LEP   A+ +LL+++YA+AG
Sbjct: 657 ENLARLEPSHGASRVLLSNMYADAG 681



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 190/445 (42%), Gaps = 78/445 (17%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  GK +H  +  SGL     I   LI  Y +C  +  A+ +FD  P+++   +  +   
Sbjct: 82  LSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISG 141

Query: 154 YARRGYHQEAVTVFHEMHIQG-----------------------LKQ--NIFVIP----- 183
           Y + G    A  +F EM ++G                        KQ  N+ V+P     
Sbjct: 142 YVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTI 201

Query: 184 -SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            +++ A  H   I     +H LV+K  F     V ++L+ MY  C S+ +A+ +FDEM E
Sbjct: 202 ATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPE 261

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVS 300
           K+IV+ N M++GY + G    A  + E I      PN  +VTW T+I G+          
Sbjct: 262 KNIVSWNVMLNGYSKAGFVDSARVVFERI------PNKDLVTWGTIIDGY---------- 305

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                +R + +   ++ + S+IS                     G+ P    +  ++  C
Sbjct: 306 -----VRVERINEALMMYRSMISA--------------------GWEPNDVMMVDLISGC 340

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
                M  G+++    + MG +    ++S ++ +YA CG I+EA   F   S+ N  +WN
Sbjct: 341 GRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWN 400

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           ++I G   +   D A+ELFN+M ER   D  S++ +++         L   LF+ M    
Sbjct: 401 ALIAGYVRNRMIDRAMELFNEMPER---DVFSWSTMISGYTQNEQPNLALELFHKMVAS- 456

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEA 505
            I P       ++  +  +G L E 
Sbjct: 457 GIKPNEVTMVSVLSAIATSGTLKEG 481



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 149/326 (45%), Gaps = 54/326 (16%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
            V+ S LK C     +  G++IH LV K   G++ F+ +SLI+MY KCG +  AK +FD 
Sbjct: 67  LVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDV 126

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
               D V+ N M+SGYV+ G    A  L +E+         V++ T+I GFS++      
Sbjct: 127 CPRSDPVSYNVMISGYVKSGQLDYACELFDEMPV----KGCVSYTTMIMGFSQNECWNQA 182

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            +LF+ MR  GV P+ V                                   TI++++ A
Sbjct: 183 VELFKQMRNVGVVPNEV-----------------------------------TIATLVSA 207

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            +    +   + +HG  I M  E  + V + L+ MY  C  + EAR LFD+M E+N V+W
Sbjct: 208 YSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSW 267

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM--- 476
           N M+ G +  G+ D A  +F ++  +   D +++  ++     V  +     ++  M   
Sbjct: 268 NVMLNGYSKAGFVDSARVVFERIPNK---DLVTWGTIIDGYVRVERINEALMMYRSMISA 324

Query: 477 -QEKYKIMPRTEHYACMVDLLGRAGR 501
             E   +M        MVDL+   GR
Sbjct: 325 GWEPNDVM--------MVDLISGCGR 342



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 64/362 (17%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  A+  G+ L + ++  G      I + +I  Y  C  I+ A + F    K N+  W A
Sbjct: 342 RTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNA 401

Query: 150 LTGAYARR--------------------------GYHQE-----AVTVFHEMHIQGLKQN 178
           L   Y R                           GY Q      A+ +FH+M   G+K N
Sbjct: 402 LIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPN 461

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              + SVL A      +  G   H  V  +S      + +++IDMY+KCGS+  A +VF 
Sbjct: 462 EVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFY 521

Query: 239 EMVEK--DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           E+ EK   +   NA++ G    G A  +L +  ++    +K N +T+  +++     G  
Sbjct: 522 EIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLV 581

Query: 297 VMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI-- 353
               + F  M+++  ++PD+  +  ++  L      +EA +  + M      P  A +  
Sbjct: 582 ESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSM------PMKADVVI 635

Query: 354 -SSILPACAS----------AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
             ++L AC +          A N+ R +  HG + V+           L +MYA  G   
Sbjct: 636 WGTLLAACRTHGNVDVGERAAENLARLEPSHGASRVL-----------LSNMYADAGKWE 684

Query: 403 EA 404
           +A
Sbjct: 685 DA 686


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 241/451 (53%), Gaps = 46/451 (10%)

Query: 118 KLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
           KL   Y     + ++  LF      ++  W A+   +A RG H++A+  + +M  QG++ 
Sbjct: 14  KLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEP 73

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N F   S+LK C     I  G+ +HS  +K  F +D +V + L+D+Y++ G V  A+++F
Sbjct: 74  NAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           D M EK +V++ AM++ Y + G          E+   RV                     
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHG----------ELDAARV--------------------- 158

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               LF  M     E D V W  +I G   N   +EA   F+ ML     P   T+ S+L
Sbjct: 159 ----LFDGME----ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVL 210

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC     +  G+ +H      G++ ++HV +ALVDMY+KCG + +AR +FDK+ +++ V
Sbjct: 211 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 270

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNM 475
            WNSMI G A  G+  EA++LF  M  R  L   +++F  +L+AC H G V  G  +FN 
Sbjct: 271 AWNSMIVGYAMXGFSQEALQLFKSMC-RMGLHPTNITFIGILSACGHSGWVTEGWDIFNK 329

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           M+++Y I P+ EHY CMV+LLGRAG + +AYE++K M+ EPD  +WG LLGAC+ HG I 
Sbjct: 330 MKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIA 389

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L E   + L +    ++   +LL+++YA  G
Sbjct: 390 LGEKIVELLVDQNLANSGTYILLSNIYAAVG 420



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 149/293 (50%), Gaps = 9/293 (3%)

Query: 86  EIYIR----DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIP 140
           ++Y+R    D   + G ++ AQ +   +   + ++ T ++T Y +   +  AR+LFD + 
Sbjct: 105 DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME 164

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           + +   W  +   Y + G   EA+ +F  M     K N   + SVL ACG L  + +G  
Sbjct: 165 ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 224

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +HS +  +    +  V ++L+DMYSKCGS+E A+ VFD++ +KD+VA N+M+ GY   G 
Sbjct: 225 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGF 284

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWT 319
           + EAL L + +    + P  +T+  ++S    SG       +F  M+ + G+EP +  + 
Sbjct: 285 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 344

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            +++ L      ++A++  K M  +   P      ++L AC     +  G++I
Sbjct: 345 CMVNLLGRAGHVEQAYELVKNMNIE---PDPVLWGTLLGACRLHGKIALGEKI 394


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 168/539 (31%), Positives = 276/539 (51%), Gaps = 44/539 (8%)

Query: 66  KMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTE 125
           K P    S  L P   + +  I  + + ++    +HA LI + L    ++A  L+     
Sbjct: 11  KTPTAKTSISLFPE--NPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAI 68

Query: 126 C--QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIP 183
               ++ +A  +F +I + +   +  +   +  +    EA+ +F EMH   ++ + F  P
Sbjct: 69  LLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFP 128

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
            +LK C  L  +  GE+IH+L++K  FG+  FV ++LI MY+ CG VE A++VFDEM E+
Sbjct: 129 CILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSER 188

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT------------------W-- 283
           ++   N+M +GY + G   E + L  E+    ++ + VT                  W  
Sbjct: 189 NVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWIN 248

Query: 284 ---------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                           +L+  ++K G      +LF  M  +    DVV+W+++ISG    
Sbjct: 249 RYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRR----DVVAWSAMISGYSQA 304

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               EA D F EM      P   T+ SIL +CA    +  GK +H       ++  + + 
Sbjct: 305 SRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG 364

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
           +AL+D YAKCG +  +  +F KM  +N ++W  +I G A++G   +A+E F  M E+  +
Sbjct: 365 TALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVE 424

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            + ++F  VL+AC H GLV+ G+ LF  M   + I PR EHY CMVD+LGRAG + EA++
Sbjct: 425 PNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQ 484

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            IK M  +P+  +W  LL +CK H N+E+ E + K L  LEP  + + +LL+++YA+ G
Sbjct: 485 FIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVG 543


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 164/508 (32%), Positives = 266/508 (52%), Gaps = 43/508 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           +++HA LI S       + T  +  + +C ++ +A  +F+ +P+ +   W A+   + + 
Sbjct: 72  EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 131

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+  +A ++F EM +  +  +   + +++++      +   E +H++ ++        V 
Sbjct: 132 GHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVA 191

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKD--IVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           ++ I  Y KCG ++ AK VF+ +   D  +V+ N+M   Y   G A +A  L   +    
Sbjct: 192 NTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREE 251

Query: 276 VKPNVVTW-----------------------------------NTLISGFSKSGDQVMVS 300
            KP++ T+                                   NT IS +SKS D     
Sbjct: 252 FKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSAR 311

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            LF +M ++      VSWT +ISG       DEA   F  M+  G  P   T+ S++  C
Sbjct: 312 LLFDIMTSR----TCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGC 367

Query: 361 ASAANMRRGKEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
               ++  GK I   A + G + D + + +AL+DMY+KCG I EAR +FD   E+  VTW
Sbjct: 368 GKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTW 427

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
            +MI G A +G   EA++LF++M +   K +H++F AVL AC H G +E G   F++M++
Sbjct: 428 TTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQ 487

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y I P  +HY+CMVDLLGR G+L EA E+I+ MS +PD  +WGALL ACK H N+++AE
Sbjct: 488 VYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAE 547

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
            AA+ L  LEP+ AA  + + ++YA AG
Sbjct: 548 QAAESLFNLEPQMAAPYVEMANIYAAAG 575



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 199/436 (45%), Gaps = 67/436 (15%)

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
           ++++ W         R    E++ +F EM   G + N F  P V KAC  L+D+G  E +
Sbjct: 15  SSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMV 74

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H+ ++K  F +D FV ++ +DM+ KC SV+ A KVF+ M E+D    NAM+SG+ Q G  
Sbjct: 75  HAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHT 134

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLI--SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
            +A +L  E+    + P+ VT  TLI  + F KS       KL + M A G+   V    
Sbjct: 135 DKAFSLFREMRLNEITPDSVTVMTLIQSASFEKS------LKLLEAMHAVGIRLGVDVQV 188

Query: 320 SVISGLVHNF--CND--------------------------------EAFDTFK---EML 342
           +V +  +  +  C D                                EAFD F     ML
Sbjct: 189 TVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLML 248

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
            + F P  +T  ++  +C +   + +G+ IH  AI +G + D+   +  + MY+K     
Sbjct: 249 REEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTC 308

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACC 461
            AR LFD M+ R  V+W  MI G A  G  DEA+ LF+ M +  +K D ++  ++++ C 
Sbjct: 309 SARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCG 368

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYAC----------MVDLLGRAGRLAEAYEMIKT 511
             G +E G+           I  R + Y C          ++D+  + G + EA ++   
Sbjct: 369 KFGSLETGKW----------IDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDN 418

Query: 512 MSTEPDLFVWGALLGA 527
            + E  +  W  ++  
Sbjct: 419 -TPEKTVVTWTTMIAG 433



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 5/276 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+++H+  I  G  +  +     I+ Y++ ++   AR+LFD +       W  +   
Sbjct: 272 LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 331

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA +G   EA+ +FH M   G K ++  + S++  CG    + TG+ I +    +    D
Sbjct: 332 YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRD 391

Query: 214 -AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              + ++LIDMYSKCGS+ +A+ +FD   EK +V    M++GY   G+  EAL L  ++ 
Sbjct: 392 NVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMI 451

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR-AKGVEPDVVSWTSVISGLVHNFCN 331
               KPN +T+  ++   + SG      + F +M+    + P +  ++ ++  L      
Sbjct: 452 DLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKL 511

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
           +EA +  + M ++   P +    ++L AC    N++
Sbjct: 512 EEALELIRNMSAK---PDAGIWGALLNACKIHRNVK 544



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           +L R  G+   V +W   I   V+     E+   F+EM   GF P + T   +  ACA  
Sbjct: 7   RLYRISGLSS-VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 65

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A++   + +H   I      D+ V +A VDM+ KC  +  A  +F++M ER+  TWN+M+
Sbjct: 66  ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAML 125

Query: 424 FGCANHGYCDEAIELFNQM 442
            G    G+ D+A  LF +M
Sbjct: 126 SGFCQSGHTDKAFSLFREM 144


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 257/509 (50%), Gaps = 73/509 (14%)

Query: 92  RALQSGKILHAQLIVSGLARL-TQIATKLITFYTECQN---------------------- 128
           RAL+ GK +H  L ++GL R  T ++  LI  Y +C                        
Sbjct: 73  RALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNM 132

Query: 129 ---------IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
                    I  AR LFD++P+ ++  W  +  A+A+ GY  EA+  + E    G++ N 
Sbjct: 133 LSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNG 192

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F    VL  C  L ++G   ++H  +L   F ++  + SS++D Y KC            
Sbjct: 193 FSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC------------ 240

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
                              GL  +A  L +E+       +V+ W T++SG++K GD    
Sbjct: 241 -------------------GLMGDARKLFDEMSAR----DVLAWTTMVSGYAKWGDMKSA 277

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           ++LF  M     E + VSWT++ISG   N    +A + F +M+     P   T SS L A
Sbjct: 278 NELFVEM----PEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCA 333

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVT 418
           CAS A+++ GK+IH   + +  + +  V SAL+DMY+KCG +   R +FD M  + + V 
Sbjct: 334 CASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVL 393

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I   A HG  +EAI++ + M     K D ++F  +L AC H GLV+ G   F  M 
Sbjct: 394 WNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMS 453

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             Y I+P  EHYAC++DLLGRAG   E  + ++ M  +PD  VW ALLG C+ HG+IEL 
Sbjct: 454 CDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELG 513

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
             AA+ L ELEP+S+   +LL+ +YA  G
Sbjct: 514 RKAAERLIELEPQSSTAYVLLSSIYAVLG 542



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 178/404 (44%), Gaps = 73/404 (18%)

Query: 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFGTDAFVVSSL 220
           EAV+    +  +GL+ +   + S+L+ C     +  G+++H  L L        F+ + L
Sbjct: 42  EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHL 101

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           I+MY+KCG   +A+KVFD+M  +++ + N M+SGY + G+   A  L +++     + +V
Sbjct: 102 INMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMP----EKDV 157

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           V+WNT++   ++ G                       W             DEA   + E
Sbjct: 158 VSWNTMVIAHAQCG----------------------YW-------------DEALRFYSE 182

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
               G      + + +L  C     +   +++HG  +V G   ++ + S+++D Y KCG 
Sbjct: 183 FRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGL 242

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL------------ 448
           + +AR LFD+MS R+ + W +M+ G A  G    A ELF +M E+  +            
Sbjct: 243 MGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARN 302

Query: 449 --------------------DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
                               D  +F++ L AC  +  ++ G+++   +  +    P T  
Sbjct: 303 GMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLL-RINFQPNTIV 361

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            + ++D+  + G L    ++   M  + D+ +W  ++ A   HG
Sbjct: 362 VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHG 405



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 4/148 (2%)

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSA 390
           +EA  + + +  +G    S T++S+L  CA +  +R GK +H    + G++     + + 
Sbjct: 41  NEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNH 100

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450
           L++MYAKCG   EAR +FDKMS RN  +WN+M+ G A  G    A +LF++M E+   D 
Sbjct: 101 LINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK---DV 157

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQE 478
           +S+  ++ A    G  +   R ++  ++
Sbjct: 158 VSWNTMVIAHAQCGYWDEALRFYSEFRQ 185



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 133/337 (39%), Gaps = 105/337 (31%)

Query: 110 ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE 169
           AR     T +++ Y +  ++  A  LF E+P+ N   W AL   YAR G   +A+ +F +
Sbjct: 255 ARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTK 314

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC-- 227
           M +  ++ + F   S L AC  ++ +  G++IH+ +L+ +F  +  VVS+LIDMYSKC  
Sbjct: 315 MMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGS 374

Query: 228 ------------------------------GSVEKAKKVFDEMVEKD--------IVAMN 249
                                         G  E+A ++ D+MV           +V +N
Sbjct: 375 LGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILN 434

Query: 250 AMV-SGYVQRGLAT-EALN---------------------------LVEEIGTPRVKPNV 280
           A   SG VQ+GL   E+++                           +++++     KP+ 
Sbjct: 435 ACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDD 494

Query: 281 VTWNTLI----------------------------------SGFSKSGDQVMVSKLFQLM 306
             WN L+                                  S ++  G    V K+ QLM
Sbjct: 495 RVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLM 554

Query: 307 RAKGVEPD-VVSWTSVISGLVHNFCNDEAFDTFKEML 342
             + V+ +  +SW   I   VH+F   ++    KE +
Sbjct: 555 NERQVKKERAISWLE-IENKVHSFSVSDSSHPLKEQI 590


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 164/491 (33%), Positives = 249/491 (50%), Gaps = 32/491 (6%)

Query: 105 IVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAV 164
           IV+G      + + ++  Y +   +  AR +FD + + +   W  +     +     EA+
Sbjct: 133 IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 165 TVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMY 224
            +F +M   G+  +   + +VL     L D+  G  I  L +K  F + A+V++ L  +Y
Sbjct: 193 LIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252

Query: 225 SKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284
           SKCG +E A+ +F ++ + D+V+ NAM+SGY        ++ L +E+     K N  +  
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 285 TLISGFSKSGD--------------------------QVMVSKLFQLMRAK-----GVEP 313
            LI  F   G                             + S+L ++  A+       E 
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
            + SW ++ISG   N   ++A   F+EM      P   T++SIL ACA    +  GK +H
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH 432

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
                   E ++ V +AL+DMYAKCG I+EA+ LF  M E+N VTWN+MI G   HGY  
Sbjct: 433 DLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGH 492

Query: 434 EAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           EA+ LFN+M   R     ++F +VL AC H GLV  G  +F  M   +   P  EHYACM
Sbjct: 493 EALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACM 552

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           VDLLGRAG L +A + I+ M  EP   VWGALLGAC  H +  LA +A+  L EL+P++ 
Sbjct: 553 VDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNV 612

Query: 553 ANNMLLTDLYA 563
              +LL+++Y+
Sbjct: 613 GYYVLLSNIYS 623



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 226/468 (48%), Gaps = 44/468 (9%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           HAQ+I++GL       TKL    +  + I  A +LF  IP  ++  +  L  A++     
Sbjct: 30  HAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSP 89

Query: 161 QEAVTVF-HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
             AV+++ H      L+ + F    V+      S +G G  +H+  +   FG+D FV S+
Sbjct: 90  SSAVSLYTHLRKSTPLEPDNFTYAFVISG---ASSLGLGLLLHAHSIVAGFGSDLFVGSA 146

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-----IG-- 272
           ++  Y K   V  A+KVFD M+E+D V  N MVSG V+     EA+ +  +     IG  
Sbjct: 147 IVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFD 206

Query: 273 ---TPRVKPNVVTWNTLISG----------------FSKSGDQVMVSKLFQLMRAKGV-- 311
                 V P V     L  G                +  +G   + SK  ++  A+ +  
Sbjct: 207 STTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFG 266

Query: 312 ---EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
              +PD+VS+ ++ISG   N   + +   FKE+L  G    S++I  ++P      ++  
Sbjct: 267 QIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHL 326

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
            + IHG     GV  +  V +AL  +Y++   I  AR LFD+ SE++  +WN+MI G A 
Sbjct: 327 TRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQ 386

Query: 429 HGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMM-QEKYK--IMP 484
           +G  ++AI LF +M++   + + ++ T++L+AC  +G + LG+ + +++ +E ++  I  
Sbjct: 387 NGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFV 446

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            T     ++D+  + G + EA  +  +M  E +   W A++     HG
Sbjct: 447 ST----ALIDMYAKCGSITEAQRLF-SMMPEKNAVTWNAMISGYGLHG 489


>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
          Length = 1817

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 244/446 (54%), Gaps = 34/446 (7%)

Query: 155  ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            A+    +EA+  F  M+  G K   F++ + L +C  L + G G +IH+ +++  F  + 
Sbjct: 1292 AKHANVREALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNL 1351

Query: 215  FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
            F+ S+L+D+Y+KC ++  AK+VFD M + D V+  +++SG+ + G   EA+   +E+   
Sbjct: 1352 FLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGS 1411

Query: 275  RVKPNVVTWNTLIS---GFSKSGDQV-----------------MVSKLFQ---------- 304
            ++KPN VT+ + IS   G     DQ                  +VS L            
Sbjct: 1412 QIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQ 1471

Query: 305  --LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
              L+    +E D + + S+ISG   N   +EA   F ZM + G  PT  T++SIL AC S
Sbjct: 1472 AVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACGS 1531

Query: 363  AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
               +++G+++H     MG E ++ V SAL+DMY+KCG I EAR +F +  E+NTV W SM
Sbjct: 1532 LTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEKNTVLWTSM 1591

Query: 423  IFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
            I G A  G   E + LF ++  EE    DH+ FTAVLTAC H G ++ G   FN M+  Y
Sbjct: 1592 ITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDY 1651

Query: 481  KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
             ++P  + YAC+VDL  R G L +A E+++    EP+  +WG+ L +CK +G  EL   A
Sbjct: 1652 GLVPDLDQYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWGSFLSSCKLYGEAELGREA 1711

Query: 541  AKHLSELEPESAANNMLLTDLYANAG 566
            A  L ++EP S A  + +  +YA AG
Sbjct: 1712 ADKLFKMEPCSTAPYVAMASIYAQAG 1737



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 190/418 (45%), Gaps = 35/418 (8%)

Query: 97   GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
            G  +HA++I +G      + + L+  Y +C  I  A+ +FD + K +   W ++   +++
Sbjct: 1335 GVQIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSK 1394

Query: 157  RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI-GTGEKIHSLVLKHSFGTDAF 215
             G  +EA+  F EM    +K N     S + AC  L  I      +H+ V+K  FG   F
Sbjct: 1395 NGRGKEAILFFKEMLGSQIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTF 1454

Query: 216  VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
            VVS LID YSKCG +++A  +F   +E+D +  N+M+SGY Q     EAL L  Z+    
Sbjct: 1455 VVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNG 1514

Query: 276  VKPNVVTWNTLISGFS-----KSGDQV--------------MVSKLFQLMRAKG------ 310
            + P   T  ++++        + G QV              +VS L  +    G      
Sbjct: 1515 LXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEAR 1574

Query: 311  ------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASA 363
                  VE + V WTS+I+G   +    E    F+ ++  +GF P     +++L AC  A
Sbjct: 1575 CVFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHA 1634

Query: 364  ANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNS 421
              + +G +  +      G+  DL   + LVD+Y + G + +A+ L +    E N+V W S
Sbjct: 1635 GFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWGS 1694

Query: 422  MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
             +  C  +G  +   E  +++ + +      + A+ +     GL      +  +M++K
Sbjct: 1695 FLSSCKLYGEAELGREAADKLFKMEPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQK 1752



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 110/243 (45%), Gaps = 12/243 (4%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            LQ G+ +H+ +   G      + + L+  Y++C +I  AR +F +  + N   W ++   
Sbjct: 1535 LQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITG 1594

Query: 154  YARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
            YA+ G   E + +F  +   +G   +     +VL AC H   +  G +  + +   +   
Sbjct: 1595 YAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLV 1654

Query: 212  TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
             D    + L+D+Y + G + KAK++ +    E + V   + +S    Y +  L  EA + 
Sbjct: 1655 PDLDQYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWGSFLSSCKLYGEAELGREAADK 1714

Query: 268  VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV-ISGLV 326
            + ++      P V     + S ++++G    V ++ +LM+ KG+      W+ V +   V
Sbjct: 1715 LFKMEPCSTAPYVA----MASIYAQAGLWSEVVEIRKLMKQKGLRKS-AGWSWVEVDKRV 1769

Query: 327  HNF 329
            H F
Sbjct: 1770 HVF 1772


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 266/508 (52%), Gaps = 35/508 (6%)

Query: 94  LQSGKILHAQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L+ G+ LHA+L++SG A   T +A  LIT Y+ C ++  A  LFD +P+ N+  W  L  
Sbjct: 33  LRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVS 92

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              +   H++A+  F  M   GL    F + S  +A   L+    G ++H + ++  F  
Sbjct: 93  GLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDA 152

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG---LATEALNLVE 269
           + FV S+L DMYSK G + +A +VFD+M +KD VA  AM+ GY + G    A  A   + 
Sbjct: 153 ELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMR 212

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSG----------------DQVMVSKLFQLMRAKGVEP 313
             G      +V+      SG  K G                 +V V      M AK  + 
Sbjct: 213 REGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADM 272

Query: 314 D--------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
           D              VVS TS+I G +   C ++A   F E+  QG  P   T SS++  
Sbjct: 273 DNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKG 332

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           CA  A + +G ++H   I   +  D  V S L+DMY KCG IS +  LF ++     + W
Sbjct: 333 CAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAW 392

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N+ I   A HG+  EAI  F++M     + +H++F ++LTAC H GLV+ G + F  M++
Sbjct: 393 NAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKD 452

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + I P+ EHY+C++D+ GRAGRL EA + I  M  +P+ + W +LLGAC+  GN EL E
Sbjct: 453 HHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGE 512

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           IAA ++ +LEP++   ++ L+ +YA+ G
Sbjct: 513 IAADNMMKLEPDNTGVHVSLSGIYASLG 540



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 5/217 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  LHA++I + L   + +++ L+  Y +C  I  +  LF EI       W A    
Sbjct: 339 LEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINV 398

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFGT 212
            A+ G+ +EA+  F  M   G++ N     S+L AC H   +  G K  +S+   H    
Sbjct: 399 LAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEP 458

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
                S +IDMY + G +++A+K   EM V+ +     +++     RG   + L  +   
Sbjct: 459 KGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRG--NKELGEIAAD 516

Query: 272 GTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMR 307
              +++P+    +  +SG ++  G    V  + +LMR
Sbjct: 517 NMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMR 553


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 164/514 (31%), Positives = 268/514 (52%), Gaps = 45/514 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G+ +HA     GL     ++T LI  Y  C     A  +F ++P  ++  W A+   
Sbjct: 115 LCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAG 174

Query: 154 YARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YA  G +  A+    +M  +G L+ N   + S+L        +  G  +H+  L+     
Sbjct: 175 YANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQ 234

Query: 213 D---AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           +     + ++L+DMY+KC  +  A +VF  M  ++ V  +A++ G+V     TEA NL +
Sbjct: 235 NEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFK 294

Query: 270 E------------------------------------IGTPRVKPNVVTWNTLISGFSKS 293
           +                                    +    +  ++   N+L+S ++K+
Sbjct: 295 DMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKA 354

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G     + LF  +  K    D +S+ +++SG V N   +EAF  FK+M +    P  AT+
Sbjct: 355 GLINEATMLFDEIAIK----DTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATM 410

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S++PAC+  A ++ G+  HG  I+ G+  +  + ++L+DMYAKCG I  +R +FDKM  
Sbjct: 411 VSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPA 470

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           R+ V+WN+MI G   HG   EA  LF  M+ +  + D ++F  ++ AC H GLV  G+  
Sbjct: 471 RDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHW 530

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ M  KY I+PR EHY CMVDLL R G L EAY+ I++M  + D+ VWGALLGAC+ H 
Sbjct: 531 FDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHK 590

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           NI+L +  ++ + +L PE   N +LL+++++ AG
Sbjct: 591 NIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAG 624



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 219/440 (49%), Gaps = 43/440 (9%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           AR +FD IP  +   + AL  AY+ RG    A+ ++  M    +  N +  P VLKAC  
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSA 111

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L+D+  G  IH+        TD FV ++LID+Y +C     A  VF +M  +D+VA NAM
Sbjct: 112 LADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAM 171

Query: 252 VSGYVQRGLATEAL-NLVEEIGTPRVKPNVVTWNTLISGFSKSG---------------- 294
           ++GY   G+   A+ +L++      ++PN  T  +L+   ++ G                
Sbjct: 172 LAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAY 231

Query: 295 -----DQVMVSKLFQLMRAK------------GVE-PDVVSWTSVISGLVHNFCN--DEA 334
                +QV++      M AK            G+   + V+W+++I G V   C+   EA
Sbjct: 232 LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFV--LCDRMTEA 289

Query: 335 FDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           F+ FK+ML +G C  SAT ++S L  CAS A++R G ++H      G+  DL   ++L+ 
Sbjct: 290 FNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLS 349

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLS 452
           MYAK G I+EA  LFD+++ ++T+++ +++ G   +G  +EA  +F +M+    + D  +
Sbjct: 350 MYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIAT 409

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
             +++ AC H+  ++ G+     +  +  +   T     ++D+  + GR+  + ++   M
Sbjct: 410 MVSLIPACSHLAALQHGRCSHGSVIIR-GLALETSICNSLIDMYAKCGRIDLSRQVFDKM 468

Query: 513 STEPDLFVWGALLGACKNHG 532
               D+  W  ++     HG
Sbjct: 469 PAR-DIVSWNTMIAGYGIHG 487



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 161/367 (43%), Gaps = 47/367 (12%)

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
           G +  A++VFD +   D  A NA++  Y  RG    A++L   +   RV PN  T+  ++
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 288 SGFSKSGD-----------------------QVMVSKLFQLMR--------AKGVEPDVV 316
              S   D                         ++    +  R        AK    DVV
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHG- 374
           +W ++++G  ++     A     +M  + G  P ++T+ S+LP  A    + +G  +H  
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 375 C--AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           C  A +   E  + + +AL+DMYAKC  +  A  +F  M+ RN VTW+++I G      C
Sbjct: 227 CLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFV---LC 283

Query: 433 DEAIELFNQMEER--KKLDHLSFTAVLTA---CCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           D   E FN  ++   + +  LS T+V +A   C  +  + +G +L  ++  K  I     
Sbjct: 284 DRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALL-AKSGIHADLT 342

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS-- 545
               ++ +  +AG + EA  +   ++ + D   +GALL     +G  E A +  K +   
Sbjct: 343 AGNSLLSMYAKAGLINEATMLFDEIAIK-DTISYGALLSGYVQNGKAEEAFLVFKKMQAC 401

Query: 546 ELEPESA 552
            ++P+ A
Sbjct: 402 NVQPDIA 408


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 237/451 (52%), Gaps = 41/451 (9%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+  Y+E  ++  AR + D +P+ N   W  L   + +RG   EAV ++ +M   G +
Sbjct: 319 TALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCR 378

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            NI    SVL AC  L D+  G +IH+  LK    T+ FV SSLIDMY KC     A+ +
Sbjct: 379 PNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTI 438

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FD + EK                                   N+V WN+L SG+S +G  
Sbjct: 439 FDTLPEK-----------------------------------NIVCWNSLASGYSYNGKM 463

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           V    LF+ M A+    ++ SW ++ISG   N    +A  +F  ML+ G  P   T SS+
Sbjct: 464 VEAMYLFKKMPAR----NLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSV 519

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+  ++  GK  H   I +G+E  + + +AL DMYAK G +  ++ +F +M ERN 
Sbjct: 520 LLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERND 579

Query: 417 VTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           VTW +MI G A +G+ +E+I L  + M      +  +F A+L AC H GLVE     F  
Sbjct: 580 VTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEK 639

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQ  + I P+ +HY CMVD+L RAGRL EA  ++    ++ +   W ALL AC  + N E
Sbjct: 640 MQ-AWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEE 698

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + E AAK L EL  ++ A  +LL+++YA+ G
Sbjct: 699 IGERAAKRLHELGKDNTAGYVLLSNMYASCG 729



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 41/354 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G I  A+ +  G+     ++ T ++    +   +  A  L+++ P  ++  + A   
Sbjct: 162 VKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATIS 221

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            + R   H  A+ VF +M   G++ N      ++KAC    + G    I    +K +F  
Sbjct: 222 GFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFE 281

Query: 213 DAF-VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  V +SLI +Y + G    A+KVFDEM  KD+V+  A++  Y + G    A  +++ +
Sbjct: 282 SSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAM 341

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + N V+W TLI+   + G+     KL+  M A G  P++                
Sbjct: 342 ----PERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNI---------------- 381

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
                              +  SS+L ACA+  ++R G  IH  ++ MG   ++ V S+L
Sbjct: 382 -------------------SCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSL 422

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           +DMY KC    +A+T+FD + E+N V WNS+  G + +G   EA+ LF +M  R
Sbjct: 423 IDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPAR 476



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 156/346 (45%), Gaps = 43/346 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA+ +  G +    +++ LI  Y +C+    A+ +FD +P+ NI  W +L   
Sbjct: 397 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASG 456

Query: 154 YARRGYHQEAVTVFHEMH----------IQGLKQN-IFV--------------IP----- 183
           Y+  G   EA+ +F +M           I G  QN  FV              +P     
Sbjct: 457 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITF 516

Query: 184 -SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            SVL AC +L  + TG+  H+  +K       F+ ++L DMY+K G ++ +K++F +M E
Sbjct: 517 SSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPE 576

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           ++ V   AM+ G  + G A E++ L+E++    + PN  T+  L+   S  G        
Sbjct: 577 RNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHY 636

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ M+A G+ P    +T ++  L       EA     +  S+     + + +++L AC +
Sbjct: 637 FEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKS---EANSWAALLSACNT 693

Query: 363 AAN----MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
             N     R  K +H        + +      L +MYA CG   +A
Sbjct: 694 YKNEEIGERAAKRLHELG-----KDNTAGYVLLSNMYASCGRWKDA 734



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 109/249 (43%), Gaps = 14/249 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L +GK+ HA+ I  G+     I T L   Y +  ++  ++ +F ++P+ N   W A+  
Sbjct: 528 SLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQ 587

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G+ +E++ +  +M   G+  N     ++L AC H   +   + IH      ++G 
Sbjct: 588 GLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLV--EQAIHYFEKMQAWGI 645

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEK----DIVAMNAMVSGYVQRGLATEALN 266
                  + ++D+ ++ G + +A+ +  +   K       A+ +  + Y    +   A  
Sbjct: 646 SPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAK 705

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSWTSVISGL 325
            + E+G    K N   +  L + ++  G     +++  LM+   ++ D   SW  V  G 
Sbjct: 706 RLHELG----KDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQV-RGQ 760

Query: 326 VHNFCNDEA 334
            H F + EA
Sbjct: 761 YHAFFSWEA 769



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 37/192 (19%)

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE------ 444
           +V  + K G I+ AR LFD M ERN V++ +M+      G   EA+EL+ Q         
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 216

Query: 445 --------RKKLDH------------------LSFTAVLTACCHVGLVELGQRLFNMMQE 478
                   R +L H                  ++F  ++ AC   G   L   +     +
Sbjct: 217 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 276

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
                   E    ++ L  R G  A A ++   M  + D+  W ALL      G+++   
Sbjct: 277 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVK-DVVSWTALLDVYSESGDLD--- 332

Query: 539 IAAKHLSELEPE 550
             A+ + +  PE
Sbjct: 333 -GARRVLDAMPE 343


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 170/502 (33%), Positives = 272/502 (54%), Gaps = 48/502 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI--ALTGAYARR 157
           LHAQL+  GL      A+KLI+ Y   + +  +R +F   P      ++   L  AYA  
Sbjct: 77  LHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALN 136

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
                AV++F  M     +++ F    ++KA    S +     +HS V+K     D +V 
Sbjct: 137 ALPHAAVSLFSAMP----QRDSFTYSFLIKALSS-SGLTPLRAVHSHVVKLGSIEDTYVG 191

Query: 218 SSLIDMYSKCGS-------------------------------VEKAKKVFDEMVEKDIV 246
           ++LID YSK G                                V  A+++FDEM +KD V
Sbjct: 192 NALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTV 251

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
           + N ++ GY + G   +A  L + +     + NVV+W+T++SG+ K GD  M   +F  M
Sbjct: 252 SWNTVLDGYTKAGKMEDAFELFQCMP----ERNVVSWSTVVSGYCKKGDIEMARVIFDKM 307

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
             K    ++V+WT ++S    N   +EA   F +M         A + SIL ACA + ++
Sbjct: 308 PTK----NLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSL 363

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD-KMSERNTVTWNSMIFG 425
             GK IH       +    HV +A++DM+ KCG ++ A  +FD +++E+++V+WN++I G
Sbjct: 364 ALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGG 423

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HG+ D+A++ F QM+ +  + D ++   VL+AC H+G VE G++ F+ M+  Y I+P
Sbjct: 424 FAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVP 483

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           + EHY CM+DLLGR G + EA  +IK+M  +P+  +WG+LL AC+ H N+E AEIA   L
Sbjct: 484 QIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNEL 543

Query: 545 SELEPESAANNMLLTDLYANAG 566
           S+L+P +A N  +L+++YA AG
Sbjct: 544 SKLQPSNAGNYAVLSNIYAEAG 565



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 175/415 (42%), Gaps = 60/415 (14%)

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++Q++  +P  L+   H+      +++H+ +LKH    D    S LI  Y+    +  ++
Sbjct: 57  VEQHLASLPHGLQHLHHV------QELHAQLLKHGLHLDPLAASKLISSYALQRRLPASR 110

Query: 235 KVFDEMVEKDIVAM--NAMVSGYVQRGLATEALN---------------LVEEIGTPRVK 277
           ++F             N ++  Y    L   A++               L++ + +  + 
Sbjct: 111 RIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKALSSSGLT 170

Query: 278 P---------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
           P               +    N LI  +SK+G  +  SK+F+ M  +    D VSW S +
Sbjct: 171 PLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRR----DTVSWNSAM 226

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS--SILPACASAANMRRGKEIHGCAIVMG 380
           + +V       A   F EM      P   T+S  ++L     A  M    E+  C     
Sbjct: 227 AAMVRQGEVASARRMFDEM------PDKDTVSWNTVLDGYTKAGKMEDAFELFQCM---- 276

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            E ++   S +V  Y K G I  AR +FDKM  +N VTW  M+  CA +G  +EA  LF 
Sbjct: 277 PERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFT 336

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGR 498
           QM+E   +LD  +  ++L AC   G + LG+R+   ++ +   + R+ H    M+D+  +
Sbjct: 337 QMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQ--LGRSTHVCNAMIDMFCK 394

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLG--ACKNHGNIELAEIAAKHLSELEPES 551
            G +  A  +  T   E D   W  ++G  A   HG+  L   A   L    P++
Sbjct: 395 CGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDA 449



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 159/381 (41%), Gaps = 42/381 (11%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           + +H+ ++  G    T +   LI  Y++      A  +F+E+P+ +   W +   A  R+
Sbjct: 173 RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQ 232

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G    A  +F EM  +       V+    KA G + D    E    +  +     +    
Sbjct: 233 GEVASARRMFDEMPDKDTVSWNTVLDGYTKA-GKMED--AFELFQCMPER-----NVVSW 284

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           S+++  Y K G +E A+ +FD+M  K++V    MVS   Q GL  EA  L  ++    V+
Sbjct: 285 STVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVE 344

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-------------------------- 311
            +V    ++++  ++SG   +  ++ + +R + +                          
Sbjct: 345 LDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYV 404

Query: 312 ------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 E D VSW ++I G   +   D+A D F +M  QGF P + T+ ++L AC     
Sbjct: 405 FDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGF 464

Query: 366 MRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMI 423
           +  G++         G+   +     ++D+  + G I EA  L   M  + N V W S++
Sbjct: 465 VEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLL 524

Query: 424 FGCANHGYCDEAIELFNQMEE 444
             C  H   + A    N++ +
Sbjct: 525 SACRLHKNVEYAEIAVNELSK 545


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 174/544 (31%), Positives = 278/544 (51%), Gaps = 80/544 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLI-----TFYTECQNIHHARMLFDEIPKTNIHRW 147
           +++  K +HA +++ GL+ L  I  + I      +        H+ +   + P +    W
Sbjct: 12  SVKQAKQVHALILIHGLSHLEPILARQILJSASNYSATVAQYVHSVLHHSKSPDS--FSW 69

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
                   + G  +EA  ++ +M   GL    F + S LKAC  ++    G  IH  V K
Sbjct: 70  ACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQK 129

Query: 208 HSF---GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
             F   G   +V ++L+D Y K G +E A+K+FDEM E+++V+ N+M++GY++ G    A
Sbjct: 130 FGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVA 189

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------- 311
             + +EI     + +V++WN++ISG++++GD      LFQ M  +               
Sbjct: 190 QRVFDEI----PQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEF 245

Query: 312 --------------EPDVVSWTSVISGLVHNFCND------------------------- 332
                         + + VSW ++ISG  ++ C D                         
Sbjct: 246 GDIDSARSFFDAMPQXNNVSWMTMISG--YSKCGDVDSACELFDQVGGKDLLLFNAMIAC 303

Query: 333 --------EAFDTFKEMLSQ--GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
                   EA   F  ML+      P   T++S++ AC+   ++R G  I      +G+E
Sbjct: 304 YAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIE 363

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            D H+ +AL+D+YAKCG I +A  LF  + +++ V + +MI GC  +G   +AI+LF++M
Sbjct: 364 MDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEM 423

Query: 443 EERKKLDHL-SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
            + +   +L +F  +LTA  H GLVE G R F  M+ KY ++P  +HY  MVDLLGRAGR
Sbjct: 424 VDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDHYGIMVDLLGRAGR 482

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L EA E+IK+M  +P   VWGALL AC+ H N+E  EIAA+H  ELEP++     LL+++
Sbjct: 483 LQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYXSLLSNI 542

Query: 562 YANA 565
           YA+ 
Sbjct: 543 YASG 546


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 259/484 (53%), Gaps = 45/484 (9%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           I    L++ K  H  +I++GL R      K I   +   ++ +A  +F   P  N +   
Sbjct: 23  IHGNNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHN 82

Query: 149 ALTGAYA---RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            +  A +       H  A+TV+ ++     K + F  P VLK    +SD+  G +IH  V
Sbjct: 83  TMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQV 142

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           +   F +   VV+ LI MY  CG +  A+K+FDEM+ KD+                    
Sbjct: 143 VVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDV-------------------- 182

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                        NV  WN L++G+ K G+      L ++M       + VSWT VISG 
Sbjct: 183 -------------NV--WNALLAGYGKVGEMDEARSLLEMMPCW--VRNEVSWTCVISGY 225

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV--MGVEG 383
             +    EA + F+ ML +   P   T+ ++L ACA   ++  G+ I  C+ V   G+  
Sbjct: 226 AKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI--CSYVDHRGMNR 283

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
            + + +A++DMYAK G I++A  +F+ ++ERN VTW ++I G A HG+  EA+ +FN+M 
Sbjct: 284 AVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMV 343

Query: 444 ERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           +   + + ++F A+L+AC HVG V+LG+RLFN M+ KY I P  EHY CM+DLLGRAG+L
Sbjct: 344 KAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKL 403

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            EA E+IK+M  + +  +WG+LL A   H ++EL E A   L +LEP ++ N MLL +LY
Sbjct: 404 READEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLY 463

Query: 563 ANAG 566
           +N G
Sbjct: 464 SNLG 467



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 37/309 (11%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           ++I +R   +  G+ +H Q++V G      + T LI  Y  C  +  AR +FDE+   ++
Sbjct: 123 LKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDV 182

Query: 145 HRWIAL---------------------------------TGAYARRGYHQEAVTVFHEMH 171
           + W AL                                    YA+ G   EA+ VF  M 
Sbjct: 183 NVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRML 242

Query: 172 IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
           ++ ++ +   + +VL AC  L  +  GE+I S V          + +++IDMY+K G++ 
Sbjct: 243 MENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNIT 302

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291
           KA  VF+ + E+++V    +++G    G   EAL +   +    V+PN VT+  ++S  S
Sbjct: 303 KALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACS 362

Query: 292 KSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
             G   +  +LF  MR+K G+ P++  +  +I  L       EA +  K M    F   +
Sbjct: 363 HVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSM---PFKANA 419

Query: 351 ATISSILPA 359
           A   S+L A
Sbjct: 420 AIWGSLLAA 428


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 252/482 (52%), Gaps = 51/482 (10%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF-----DEIPKTNIHR-W 147
           L++ K  H  +I++GL R      K   F   C N  H R  +        P T +H   
Sbjct: 28  LKTLKQSHCFMIITGLNRDNLNVAK---FIEACSNAGHLRYAYSVFTHQPFPNTYLHNTM 84

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           I        R  H  A+TV+ +      K + F  P VLK    +SD+  G ++H   + 
Sbjct: 85  IRALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVV 144

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
             F +   VV+ LI MYS CG +  A+KVFDEM  +D+                      
Sbjct: 145 FGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDV---------------------- 182

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                      NV  WN L++G+ K G+      L ++M       + VSWT VISG   
Sbjct: 183 -----------NV--WNALLAGYGKVGEMDEARGLLEMMPCW--VRNAVSWTCVISGYAR 227

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV--MGVEGDL 385
           +    EA + F+ ML +   P   T+ ++L ACA   ++  G+ I  C+ V   G+   +
Sbjct: 228 SGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERI--CSYVDHRGMNRAV 285

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
            + +A++DMYAK G I++A  +F+ ++ERN VTW ++I G A HG+  EA+ +F++M + 
Sbjct: 286 SLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKA 345

Query: 446 K-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             K + ++F A+L+AC HVG V+LG R FN M+ KY I P  EHY CM+DLLGRAG+L E
Sbjct: 346 GVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLRE 405

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           A E+IK+M  E +  +WG+LL A   H +I++ E A   L +LEP ++ N MLL +LY+N
Sbjct: 406 AEEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSN 465

Query: 565 AG 566
            G
Sbjct: 466 LG 467



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 140/309 (45%), Gaps = 37/309 (11%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           ++I +R   +  G+ +H Q +V G      + T LI  Y+ C  +  AR +FDE+   ++
Sbjct: 123 LKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDV 182

Query: 145 HRWIAL---------------------------------TGAYARRGYHQEAVTVFHEMH 171
           + W AL                                    YAR G   EA+ VF  M 
Sbjct: 183 NVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRML 242

Query: 172 IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231
           ++ +  +   + +VL AC  L  +  GE+I S V          + +++IDMY+K G++ 
Sbjct: 243 MENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNIT 302

Query: 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291
           KA +VF+ + E+++V    +++G    G   EAL + + +    VKPN VT+  ++S  S
Sbjct: 303 KALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACS 362

Query: 292 KSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
             G   + ++ F  MR+K G+ P++  +  +I  L       EA +  K M    F   +
Sbjct: 363 HVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSM---PFESNA 419

Query: 351 ATISSILPA 359
           A   S+L A
Sbjct: 420 AIWGSLLAA 428


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 178/508 (35%), Positives = 262/508 (51%), Gaps = 52/508 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--------EIPKTNIHRWIALT 151
           LHAQL+  GL R    A+KLI  Y   + +   R +F           P +       L 
Sbjct: 117 LHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLL 176

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYA       A+ VF ++ ++  ++  F    ++KA    + +      H+ V+K    
Sbjct: 177 RAYALNSLPHAALAVFLDVPLR--QRGTFTYSFLIKALA-AAGLTPVRGAHAHVVKLGSA 233

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMV------------------------------ 241
            D FV ++LID YSK   +  AKKVFDEM                               
Sbjct: 234 EDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM 293

Query: 242 -EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
            EKD V+ N M+ GY + G A +A  L + +       NVV+W+T++S + K GD  M  
Sbjct: 294 PEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGR----NVVSWSTVVSAYCKKGDMEMAR 349

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            +F  M AK    ++V+WT ++S        +EA   F EM+          + SIL AC
Sbjct: 350 VIFDKMPAK----NLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAAC 405

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD-KMSERNTVTW 419
           A + ++  GK IH       +     V +AL+DM+ KCG ++ A  +FD ++ E++ V+W
Sbjct: 406 AESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSW 465

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N +I G A HG  ++A+ELF QM+++    D ++   VL+AC H+GLVE G+R F  M+ 
Sbjct: 466 NIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMET 525

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y I P+ EHY CMVDLLGR G + EA +MIK M  EP+  +WG+LL AC+ H N+E AE
Sbjct: 526 DYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAE 585

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           +A   LS L+P SA N  +L+++YA AG
Sbjct: 586 LAVNELSNLQPSSAGNYAVLSNIYAEAG 613


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 262/480 (54%), Gaps = 46/480 (9%)

Query: 94  LQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L   K +H  +IVSG   L   +   L+ FY E  N   A  +F  +P  ++  +  +  
Sbjct: 146 LSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIV 205

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--F 210
            YA++G+  EA+ ++ +M   G++ + + + S+L  CGHLSDI  G+ +H  + +    +
Sbjct: 206 GYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVY 265

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++  + ++L+DMY KC     AK+ FD M +KD+ + N MV G+V+ G    A  + ++
Sbjct: 266 SSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQ 325

Query: 271 IGTPRVKPNVVTWNTLISGFSKSG-DQVMVSKL-FQLMRAKGVEPDVVSWTSVISGLVHN 328
           +     K ++V+WN+L+ G+SK G DQ  V +L +++   + V+PD V+  S+ISG    
Sbjct: 326 MP----KRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISG---- 377

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                                           A+   +  G+ +HG  I + ++GD  + 
Sbjct: 378 -------------------------------AANNGELSHGRWVHGLVIRLQLKGDAFLS 406

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
           SAL+DMY KCG I  A  +F   +E++   W SMI G A HG   +A++LF +M EE   
Sbjct: 407 SALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVT 466

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            ++++  AVLTAC H GLVE G  +FN M++K+   P TEHY  +VDLL RAGR+ EA +
Sbjct: 467 PNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKD 526

Query: 508 MI-KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++ K M   P   +WG++L AC+   +IE AE+A   L +LEPE     +LL+++YA  G
Sbjct: 527 IVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVG 586


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 178/508 (35%), Positives = 262/508 (51%), Gaps = 52/508 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--------EIPKTNIHRWIALT 151
           LHAQL+  GL R    A+KLI  Y   + +   R +F           P +       L 
Sbjct: 45  LHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLL 104

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYA       A+ VF ++ ++  ++  F    ++KA    + +      H+ V+K    
Sbjct: 105 RAYALNSLPHAALAVFLDVPLR--QRGTFTYSFLIKALA-AAGLTPVRGAHAHVVKLGSA 161

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMV------------------------------ 241
            D FV ++LID YSK   +  AKKVFDEM                               
Sbjct: 162 EDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEM 221

Query: 242 -EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
            EKD V+ N M+ GY + G A +A  L + +       NVV+W+T++S + K GD  M  
Sbjct: 222 PEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGR----NVVSWSTVVSAYCKKGDMEMAR 277

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            +F  M AK    ++V+WT ++S        +EA   F EM+          + SIL AC
Sbjct: 278 VIFDKMPAK----NLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAAC 333

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD-KMSERNTVTW 419
           A + ++  GK IH       +     V +AL+DM+ KCG ++ A  +FD ++ E++ V+W
Sbjct: 334 AESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSW 393

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N +I G A HG  ++A+ELF QM+++    D ++   VL+AC H+GLVE G+R F  M+ 
Sbjct: 394 NIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMET 453

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            Y I P+ EHY CMVDLLGR G + EA +MIK M  EP+  +WG+LL AC+ H N+E AE
Sbjct: 454 DYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAE 513

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           +A   LS L+P SA N  +L+++YA AG
Sbjct: 514 LAVNELSNLQPSSAGNYAVLSNIYAEAG 541


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 259/483 (53%), Gaps = 41/483 (8%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           I +  R + +     +HAQLI +G ++   +  +L+   ++C  I +A  +F      N+
Sbjct: 53  ISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNV 112

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
           + + AL   +   G + +A+ ++  M    +  + +++ S+LKACG    +  G ++HS 
Sbjct: 113 YLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSR 172

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            LK    ++  V   ++++Y KCG +  A++VF+EM E D+VA   M+S Y  +GL    
Sbjct: 173 ALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGL---- 227

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
              VEE G                             +F  +R K    D V WT++I G
Sbjct: 228 ---VEEAGA----------------------------VFSRVRRK----DTVCWTAMIDG 252

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
            V N   + A + F+ M  +   P   TI  +L AC+    +  G+ +H       +E +
Sbjct: 253 FVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELN 312

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           L V +AL++MY++CG I EA+T+FD+M +R+ +T+N+MI G + +G   +AIELF  M  
Sbjct: 313 LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIG 372

Query: 445 RK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
           R+ +  +++F  VL AC H GLV+ G ++F+ M   Y + P+ EHY CMVDLLGR GRL 
Sbjct: 373 RRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLE 432

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EAY++I+TM   PD  + G LL ACK H N+EL E  AK L +     +   +LL+ +YA
Sbjct: 433 EAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYA 492

Query: 564 NAG 566
           ++G
Sbjct: 493 SSG 495



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 162/352 (46%), Gaps = 35/352 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK----------- 141
           AL+ G+ +H++ +  GL+    +  +++  Y +C  +  AR +F+E+P+           
Sbjct: 162 ALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISS 221

Query: 142 --------------TNIHR-----WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVI 182
                         + + R     W A+   + R      A+  F  M  + ++ N F I
Sbjct: 222 YSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTI 281

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
             VL AC  L  +  G  +HS + K     + FV ++LI+MYS+CGS+++A+ VFDEM +
Sbjct: 282 VCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKD 341

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           +D++  N M+SG    G + +A+ L   +   R++P  VT+  +++  S  G      K+
Sbjct: 342 RDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKI 401

Query: 303 FQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           F  M R  GVEP +  +  ++  L      +EA+D  + M      P    + ++L AC 
Sbjct: 402 FHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACK 458

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
              N+  G+++       G + D      L  +YA  G   EA  +  KM E
Sbjct: 459 MHKNLELGEQVAKVLEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 509


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 161/510 (31%), Positives = 268/510 (52%), Gaps = 40/510 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + G  LH   + S  A  + I T  +  Y +C  +  A  +F+ +P      + A+  
Sbjct: 254 AFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIV 313

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC----GHLSDIGTGEKIHSLVLKH 208
            YAR+    +A+ +F  +    L  +   +   L AC    GHL  I    ++H L +K 
Sbjct: 314 GYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGI----QLHGLAVKC 369

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
             G +  V ++++DMY KCG++ +A  +FD+M  +D V+ NA+++ + Q     + L+L 
Sbjct: 370 GLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLF 429

Query: 269 EEIGTPRVKPNVVTWNTLISG--------------------------FSKSGDQVMVSKL 302
             +    ++P+  T+ +++                            F  S    M  K 
Sbjct: 430 VSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKC 489

Query: 303 FQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             LM A+ +     E   VSW S+ISG      ++ A   F +ML  G  P + T +++L
Sbjct: 490 GMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVL 549

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             CA+ A +  GK+IH   + + +  D+++ S LVDMY+KCG + ++R +F+K  +R+ V
Sbjct: 550 DVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYV 609

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TW++MI   A HG+ ++AI+LF +M+    K +H  F +VL AC H+G V+ G   F +M
Sbjct: 610 TWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIM 669

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           Q  Y + P  EHY+CMVDLLGR+ ++ EA ++I++M  E D  +W  LL  CK  GN+E+
Sbjct: 670 QSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEV 729

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE A   L +L+P+ ++  +LL ++YAN G
Sbjct: 730 AEKAFNSLLQLDPQDSSAYVLLANVYANVG 759



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 138/579 (23%), Positives = 242/579 (41%), Gaps = 111/579 (19%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA-----RM------------ 134
           +AL  GK  HAQ+IV+       +A  L+ FY +  N+++A     RM            
Sbjct: 20  KALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMI 79

Query: 135 --------------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF 180
                         LFD +P+ ++  W +L   Y   G +++++ +F  M    +  +  
Sbjct: 80  FGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYA 139

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
               VLKAC  + D G G ++H L ++  F  D    S+L+DMYSKC  ++ A ++F EM
Sbjct: 140 TFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREM 199

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI---SGFS--KSGD 295
            E+++V  +A+++GYVQ     E L L +++    +  +  T+ ++    +G S  K G 
Sbjct: 200 PERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGT 259

Query: 296 QV---------------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNF 329
           Q+                     M +K  ++  A  V      P   S+ ++I G     
Sbjct: 260 QLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQD 319

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
              +A + F+ +          ++S  L AC+       G ++HG A+  G+  ++ V +
Sbjct: 320 QGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVAN 379

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKL 448
            ++DMY KCG + EA T+FD M  R+ V+WN++I     +    + + LF  M     + 
Sbjct: 380 TILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEP 439

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH------YACMVDLLGRAGRL 502
           D  ++ +V+ AC        GQ+  N   E +  + ++         + +VD+ G+ G L
Sbjct: 440 DDFTYGSVVKACA-------GQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGML 492

Query: 503 AEA----------------------------------YEMIKTMSTEPDLFVWGALLGAC 528
            EA                                  +  +  M   PD F +  +L  C
Sbjct: 493 MEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVC 552

Query: 529 KNHGNIELAEIAAKHLSELEPESAAN-NMLLTDLYANAG 566
            N   IEL +     + +L   S       L D+Y+  G
Sbjct: 553 ANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCG 591



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 165/364 (45%), Gaps = 47/364 (12%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F    +L+ C +L  +  G++ H+ ++  SF    +V + L+  Y K  ++  A KVFD 
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M  +D                                   V++WNT+I G+++ G+    
Sbjct: 67  MPHRD-----------------------------------VISWNTMIFGYAEIGNMGFA 91

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             LF  M     E DVVSW S++S  +HN  N ++ + F  M S       AT S +L A
Sbjct: 92  QSLFDTMP----ERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKA 147

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           C+   +   G ++H  AI MG E D+   SALVDMY+KC  +  A  +F +M ERN V W
Sbjct: 148 CSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCW 207

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           +++I G   +    E ++LF  M +    +   ++ +V  +C  +   +LG +L     +
Sbjct: 208 SAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALK 267

Query: 479 K---YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
               Y  +  T      +D+  +  R+++A+++  T+   P       ++G  +    ++
Sbjct: 268 SDFAYDSIIGT----ATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLK 323

Query: 536 LAEI 539
             EI
Sbjct: 324 ALEI 327



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 182/408 (44%), Gaps = 45/408 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH   +  GL     +A  ++  Y +C  +  A  +FD++ + +   W A+  A+ +
Sbjct: 359 GIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQ 418

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                + +++F  M    ++ + F   SV+KAC     +  G +IH  ++K   G D FV
Sbjct: 419 NEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFV 478

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+L+DMY KCG + +A+K+ D + EK  V+ N+++SG+  +  +  A     ++    V
Sbjct: 479 GSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGV 538

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
            P+  T+                                   +TL+  +SK G+     +
Sbjct: 539 IPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNM----Q 594

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
             +LM  K  + D V+W+++I    ++   ++A   F+EM      P      S+L ACA
Sbjct: 595 DSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACA 654

Query: 362 SAANMRRGKEIHGCAIVM---GVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
               + +G  +H   I+    G++  +   S +VD+  +   ++EA  L + M  E + V
Sbjct: 655 HMGYVDKG--LHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDV 712

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL 465
            W +++  C   G  + A + FN + +    D  ++  +     +VG+
Sbjct: 713 IWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGM 760



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 152/313 (48%), Gaps = 5/313 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL  G  +H +++ SG+     + + L+  Y +C  +  A  + D + +     W ++ 
Sbjct: 455 QALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSII 514

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             ++ +   + A   F +M   G+  + F   +VL  C +++ I  G++IH+ +LK +  
Sbjct: 515 SGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLH 574

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D ++ S+L+DMYSKCG+++ ++ +F++  ++D V  +AM+  Y   G   +A+ L EE+
Sbjct: 575 SDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEM 634

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
               VKPN   + +++   +  G        FQ+M++  G++P +  ++ ++  L     
Sbjct: 635 QLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGR--- 691

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           +D+  +  K + S  F        ++L  C    N+   ++     + +  + D      
Sbjct: 692 SDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQ-DSSAYVL 750

Query: 391 LVDMYAKCGFISE 403
           L ++YA  G   E
Sbjct: 751 LANVYANVGMWGE 763


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 163/501 (32%), Positives = 269/501 (53%), Gaps = 32/501 (6%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  +H  ++ +GL  +  +   L+  Y +  ++  +  +F+ +P+ N   W +  G +  
Sbjct: 196 GLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLN 255

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G + + + +F  M  +G       + S+L A   L     G ++H   +K +   D FV
Sbjct: 256 AGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFV 315

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SL+DMY+K GS+EKA  VF+++  +++V+ NAM++  VQ G  +EA  LV ++     
Sbjct: 316 ANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGE 375

Query: 277 KPNVVTWNTLISGFS-----KSGDQV---------------------MVSKLFQLMRAKG 310
            PN +T   L+   S     K+G Q+                     M +K  QL  A+ 
Sbjct: 376 CPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQS 435

Query: 311 V----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
           +    E D VS+ ++I G   +  + E+ + FK++ S G    + +    L AC + ++ 
Sbjct: 436 IFDLSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSF 495

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           ++GKEIHG  +   +     + + L+ +Y K G +  A  +F+++ E++  +WN+MI G 
Sbjct: 496 KQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGY 555

Query: 427 ANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
             HG  D A  LF+ M++     DH+S+ AVL+ C H GLVE G++ F+ M  +  + P+
Sbjct: 556 GMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQ-NLEPQ 614

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
             HYACMVDLLGR+G+L E+ E+I  M    +  VWGALLGAC+ HGNIELA+ AA HL 
Sbjct: 615 QMHYACMVDLLGRSGQLTESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLF 674

Query: 546 ELEPESAANNMLLTDLYANAG 566
           EL+PE +    +L ++YA AG
Sbjct: 675 ELKPEHSGYYSVLRNMYAEAG 695



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 237/486 (48%), Gaps = 45/486 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LHA  + SG          L+ FY  C +   AR +FDE+P  ++  W +L  ++  
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                +A      M   G+  N+  + SV+ ACG   + G G  +H LVLK    +   +
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNL 214

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY K G VE + KVF+ M E++ V+ N+ +  ++  GL  + L L   +     
Sbjct: 215 GNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGF 274

Query: 277 KPNVVTWNTLIS-----GFSKSGDQV---------------------MVSKLFQLMRAKG 310
            P  +T ++L+      G+   G +V                     M +K   L +A  
Sbjct: 275 MPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACA 334

Query: 311 VEP-----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           V       +VVSW ++I+ LV N    EAF    +M   G CP S T+ ++LPAC+  A+
Sbjct: 335 VFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMAS 394

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           ++ GK+IH  +I  G+  DL + +AL+DMYAKCG +  A+++FD +SE++ V++N++I G
Sbjct: 395 LKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILG 453

Query: 426 CANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            +   +  E++ LF Q+     + D +SF   LTAC ++   + G+ +  ++  +     
Sbjct: 454 YSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRL---- 509

Query: 485 RTEHYACMVDLLG---RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
            + H      LLG   + G L  A ++   +  E D+  W  ++     HG I+    AA
Sbjct: 510 LSNHPFLANTLLGLYTKGGMLDTASKIFNRIK-EKDVASWNNMIMGYGMHGQID----AA 564

Query: 542 KHLSEL 547
            HL +L
Sbjct: 565 FHLFDL 570



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 154/325 (47%), Gaps = 5/325 (1%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R  +L++GK +HA  I +GL     I+  LI  Y +C  +  A+ +FD   K ++  +  
Sbjct: 391 RMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFDLSEKDDV-SYNT 449

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   Y++  +  E++ +F ++   G++ +       L AC +LS    G++IH ++++  
Sbjct: 450 LILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRL 509

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
                F+ ++L+ +Y+K G ++ A K+F+ + EKD+ + N M+ GY   G    A +L +
Sbjct: 510 LSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFD 569

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            +    V  + V++  ++S  S  G      K F  M A+ +EP  + +  ++  L    
Sbjct: 570 LMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQMHYACMVDLLGR-- 627

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
            + +  ++ + +L   F   S    ++L AC    N+   +        +  E   +  S
Sbjct: 628 -SGQLTESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYY-S 685

Query: 390 ALVDMYAKCGFISEARTLFDKMSER 414
            L +MYA+ G  +EA  +   M  R
Sbjct: 686 VLRNMYAEAGRWNEAHKIRTLMKSR 710



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 3/131 (2%)

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMR--RGKEIHGCAIVMGVEGDLHVRSA 390
           EA   +  ML  G  P   T    L A A+AA     +G E+H  A+  G   D+   + 
Sbjct: 57  EALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKGLELHAAALRSGHLADVFAGNT 116

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG-CANHGYCDEAIELFNQMEERKKLD 449
           LV  YA CG   +AR +FD+M  R+ V+WNS++    AN  + D    L + M     ++
Sbjct: 117 LVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVN 176

Query: 450 HLSFTAVLTAC 460
             S  +V+ AC
Sbjct: 177 VASLVSVVPAC 187


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 164/507 (32%), Positives = 260/507 (51%), Gaps = 44/507 (8%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           Y R+R L+  ++L   +    +         +++ Y    ++  AR +FD +P  N   W
Sbjct: 105 YARNRRLRDARMLFDSMPEKDVVSWN----AMLSGYVRSGHVDEARDVFDRMPHKNSISW 160

Query: 148 IALTGAYARRGYHQEAVTVFH------------------EMHIQGLKQNIF-VIP----- 183
             L  AY R G  +EA  +F                   + ++ G  + +F  IP     
Sbjct: 161 NGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLI 220

Query: 184 ---SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
              +++       D+    ++     + S   D F  ++++  Y + G +++A++VFDEM
Sbjct: 221 SWNTMISGYAQDGDLSQARRL----FEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
            +K  ++ N M++GY Q         L EE+  P    N+ +WN +ISG+ ++GD     
Sbjct: 277 PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFP----NIGSWNIMISGYCQNGDLAQAR 332

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            LF +M  +    D VSW ++I+G   N   +EA +   EM   G     +T    L AC
Sbjct: 333 NLFDMMPQR----DSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSAC 388

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           A  A +  GK++HG  +  G E    V +ALV MY KCG I EA  +F  +  ++ V+WN
Sbjct: 389 ADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWN 448

Query: 421 SMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +M+ G A HG+  +A+ +F  M     K D ++   VL+AC H GL + G   F+ M + 
Sbjct: 449 TMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKD 508

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y I P ++HYACM+DLLGRAG L EA  +I+ M  EPD   WGALLGA + HGN+EL E 
Sbjct: 509 YGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQ 568

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA+ + ++EP ++   +LL++LYA +G
Sbjct: 569 AAEMVFKMEPHNSGMYVLLSNLYAASG 595



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 207/420 (49%), Gaps = 37/420 (8%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+ Y        AR LFD++P  ++  W  +   YAR    ++A  +F  M  + +   
Sbjct: 70  MISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSW 129

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             ++   +++ GH+ +          V       ++   + L+  Y + G +E+A+++F+
Sbjct: 130 NAMLSGYVRS-GHVDEARD-------VFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFE 181

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
              + ++++ N ++ GYV+R +  +A  L ++I       ++++WNT+ISG+++ GD   
Sbjct: 182 SKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPV----RDLISWNTMISGYAQDGDLSQ 237

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             +LF+    +    DV +WT+++   V +   DEA   F EM  +       + + ++ 
Sbjct: 238 ARRLFEESPVR----DVFTWTAMVYAYVQDGMLDEARRVFDEMPQK----REMSYNVMIA 289

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
             A    M  G+E+        + G  ++   ++  Y + G +++AR LFD M +R++V+
Sbjct: 290 GYAQYKRMDMGRELFEEMPFPNI-GSWNI---MISGYCQNGDLAQARNLFDMMPQRDSVS 345

Query: 419 WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W ++I G A +G  +EA+ +  +M+ + + L+  +F   L+AC  +  +ELG+++     
Sbjct: 346 WAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHG--- 402

Query: 478 EKYKIMPRTEHYACMVD--LLG---RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              +++       C+V   L+G   + G + EAY++ + +  + D+  W  +L     HG
Sbjct: 403 ---QVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK-DIVSWNTMLAGYARHG 458



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 164/331 (49%), Gaps = 31/331 (9%)

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           I  + + G  + A  VFD M  ++ V+ NAM+SGY++    + A +L +++       ++
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKM----PHKDL 95

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
            +WN +++G++++        LF  M     E DVVSW +++SG V +   DEA D F  
Sbjct: 96  FSWNLMLTGYARNRRLRDARMLFDSM----PEKDVVSWNAMLSGYVRSGHVDEARDVFDR 151

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M  +     S + + +L A   +  +   + +         + +L   + L+  Y K   
Sbjct: 152 MPHK----NSISWNGLLAAYVRSGRLEEARRL----FESKSDWELISCNCLMGGYVKRNM 203

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460
           + +AR LFD++  R+ ++WN+MI G A  G   +A  LF   EE    D  ++TA++ A 
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF---EESPVRDVFTWTAMVYAY 260

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
              G+++  +R+F+ M +K     R   Y  M+    +  R+    E+ + M   P++  
Sbjct: 261 VQDGMLDEARRVFDEMPQK-----REMSYNVMIAGYAQYKRMDMGRELFEEMPF-PNIGS 314

Query: 521 WGALL-GACKNHGNIELAEIAAKHLSELEPE 550
           W  ++ G C+N    +LA+  A++L ++ P+
Sbjct: 315 WNIMISGYCQNG---DLAQ--ARNLFDMMPQ 340



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 153/339 (45%), Gaps = 30/339 (8%)

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           +++I  Y +      A+ +FD+M  KD+ + N M++GY +     +A  L + +     +
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSM----PE 123

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
            +VV+WN ++SG+ +SG       +F  M  K    + +SW  +++  V +   +EA   
Sbjct: 124 KDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRL 179

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYA 396
           F+         + +    I   C     ++R        +   +   DL   + ++  YA
Sbjct: 180 FE---------SKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYA 230

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAV 456
           + G +S+AR LF++   R+  TW +M++     G  DEA  +F++M ++++   +S+  +
Sbjct: 231 QDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKRE---MSYNVM 287

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           +        +++G+ LF  M       P    +  M+    + G LA+A  +   M  + 
Sbjct: 288 IAGYAQYKRMDMGRELFEEMP-----FPNIGSWNIMISGYCQNGDLAQARNLFDMM-PQR 341

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           D   W A++     +G   L E A   L E++ +  + N
Sbjct: 342 DSVSWAAIIAGYAQNG---LYEEAMNMLVEMKRDGESLN 377



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 15/251 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H Q++ +G  +   +   L+  Y +C  I  A  +F  +   +I  W  +  
Sbjct: 393 ALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLA 452

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LSDIGTGEKIHSLVLKHSF 210
            YAR G+ ++A+TVF  M   G+K +   +  VL AC H  L+D GT E  HS+   +  
Sbjct: 453 GYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGT-EYFHSMNKDYGI 511

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALN 266
             ++   + +ID+  + G +E+A+ +   M  E D     A++      G   L  +A  
Sbjct: 512 TPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAE 571

Query: 267 LVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISG 324
           +V      +++P+      L+S  ++ SG  V VSK+   MR  GV+     SW  V   
Sbjct: 572 MVF-----KMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEV-QN 625

Query: 325 LVHNFCNDEAF 335
            +H F   + F
Sbjct: 626 KIHTFTVGDCF 636



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 27/241 (11%)

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL-PACASAANMRRGK 370
           +P  V  T  IS  + N   D A   F  M  +     +A IS  L  A  S A     K
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDK 89

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
             H          DL   + ++  YA+   + +AR LFD M E++ V+WN+M+ G    G
Sbjct: 90  MPHK---------DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSG 140

Query: 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
           + DEA ++F++M  +   + +S+  +L A    G +E  +RLF    +        E  +
Sbjct: 141 HVDEARDVFDRMPHK---NSISWNGLLAAYVRSGRLEEARRLFESKSD-------WELIS 190

Query: 491 CMVDLLGRAGR--LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           C   + G   R  L +A ++   +    DL  W  ++      G++      A+ L E  
Sbjct: 191 CNCLMGGYVKRNMLGDARQLFDQIPVR-DLISWNTMISGYAQDGDLS----QARRLFEES 245

Query: 549 P 549
           P
Sbjct: 246 P 246


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 161/505 (31%), Positives = 261/505 (51%), Gaps = 47/505 (9%)

Query: 104 LIVSGLARLTQIATKLITFYTECQNIHHARMLF-DEIPKTNIHRWIALTGAYARRGYHQE 162
           ++ SG   L    T LI  Y+ C  +  A ++F D   + N+  + A+   +   G   +
Sbjct: 1   MVTSGFIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAAD 60

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
               +  M   G+  + F  P V++AC    ++    KIH  + K     + FV S+L++
Sbjct: 61  GFQFYKRMRSVGVMPDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVN 117

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT 282
            Y K    E A+KVF+E+ E+D+V  NAM++GY + G   +A+ + + +G   +  +  T
Sbjct: 118 TYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFT 177

Query: 283 WNTLISGFSKSGDQ------------------VMVSKLFQLMRAKGV------------- 311
             +++S  +  GD                   V VS     M  K               
Sbjct: 178 TTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMIN 237

Query: 312 EPDVVSWTSVISGLVHNFCNDE--AFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
           E D+ SW S+IS   H  C+D       F +ML     P   TI+++LPAC+  A +  G
Sbjct: 238 EKDLFSWNSIISA--HEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHG 295

Query: 370 KEIHGCAIVMGVE-----GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           +EIHG  IV G+       D+ + +A++DMYAKCG +  A  +FD M  ++  +WN MI 
Sbjct: 296 REIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIM 355

Query: 425 GCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
           G A HGY  EA+++F++M E + K D ++F  VL+AC H G V  G+     M+ ++ ++
Sbjct: 356 GYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVI 415

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
           P  EHY C++D+LGRAG L EAY++ + +  E +L +W ALLGAC+ HGN EL  +  + 
Sbjct: 416 PTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEK 475

Query: 544 LSELEPE--SAANNMLLTDLYANAG 566
           +++LEP+   + + +L++ LY   G
Sbjct: 476 ITQLEPKHCGSGSYILMSSLYGVVG 500



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 163/373 (43%), Gaps = 46/373 (12%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H  L   GL     + + L+  Y +      A  +F+E+P+ ++  W A+   Y + G+
Sbjct: 96  IHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGH 155

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
             +AV VF  M  +G+  + F   S+L     + DI  G  IH +V K  + +   V ++
Sbjct: 156 LNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNA 215

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LIDMY KC   E A  +F+ + EKD+ + N+++S + Q       L L  ++   RV P+
Sbjct: 216 LIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPD 275

Query: 280 VVTWNTLIS-----------------------GFSKSGDQVMVSK--------------- 301
           V+T   ++                        G +++GD V+++                
Sbjct: 276 VITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNA 335

Query: 302 --LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             +F LMR K    DV SW  +I G   +    EA D F  M      P   T   +L A
Sbjct: 336 DIIFDLMRNK----DVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSA 391

Query: 360 CASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
           C+ A  + +G+  +    +  GV   +   + ++DM  + G + EA  L  ++  E N +
Sbjct: 392 CSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLI 451

Query: 418 TWNSMIFGCANHG 430
            W +++  C  HG
Sbjct: 452 LWMALLGACRLHG 464



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 128/249 (51%), Gaps = 6/249 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           + +G+ +H  +   G +    ++  LI  Y +C++   A M+F+ I + ++  W ++  A
Sbjct: 191 INNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISA 250

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-----KH 208
           + +   H   + +F +M    +  ++  I +VL AC HL+ +  G +IH  ++     K+
Sbjct: 251 HEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKN 310

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
             G D  + ++++DMY+KCG ++ A  +FD M  KD+ + N M+ GY   G  TEAL++ 
Sbjct: 311 ENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMF 370

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVH 327
             +   ++KP+VVT+  ++S  S +G           M  + GV P +  +T +I  L  
Sbjct: 371 HRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGR 430

Query: 328 NFCNDEAFD 336
                EA+D
Sbjct: 431 AGHLGEAYD 439


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 249/473 (52%), Gaps = 45/473 (9%)

Query: 100 LHAQLIVSGLARL--TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           + AQLI +    L    IA KLI       N++HA+++F ++P  N+  W A+  A+   
Sbjct: 30  IQAQLITNPPLSLHPNLIAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINC 89

Query: 158 GYHQEAVTVFHEMH--IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           G  + A+  F+           N ++  S++KAC  L  I  G K+H++V+K     +  
Sbjct: 90  GAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIH 149

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + +SL+DMY K      A +VFDEM  +D                               
Sbjct: 150 LGTSLVDMYFKFREPASAGQVFDEMPLRD------------------------------- 178

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
               VV+WNT++SG+   GD     ++F  M    +E DV+SW ++I G V N    +A 
Sbjct: 179 ----VVSWNTMVSGYCLCGDLESARRVFDQM----LERDVISWNAMIGGYVQNGKYSDAI 230

Query: 336 DTFKEMLS-QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
           + F EM    G  P   T+ S+L ACA    +  G+ I       G   +L++ +AL+DM
Sbjct: 231 EVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDM 290

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSF 453
           YAKCG + EAR +FD M ER+ ++W++MI G   HG  DEA   +++M E   K + ++F
Sbjct: 291 YAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTF 350

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
             +L+AC H GLV+ G  LF+ M ++Y+I+P+  HY C++DLL RAGRL EA ++I +M 
Sbjct: 351 MGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMP 410

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            EP++ VWGALLG C+ H +    E  A+HL EL+ E   + + +    A+ G
Sbjct: 411 IEPNVIVWGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVG 463


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 162/490 (33%), Positives = 261/490 (53%), Gaps = 42/490 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           ++  LI  Y +C  +  A  +FD + K N+  W AL   + + G   E++ +F +M + G
Sbjct: 9   LSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSG 68

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +K N F   + LKACG L+ +  G +IH + +K  F     V +S+IDMYSKCG + +A 
Sbjct: 69  VKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAA 128

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL---VEEIG--------TPRVKP----- 278
            +F+ M  +++++ NAM++GY   G   +AL L   ++E+G        T  +K      
Sbjct: 129 CMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLG 188

Query: 279 ---------------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                                N      LI  + K G   M  ++F  +     E  V+S
Sbjct: 189 AIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIE----EKHVIS 244

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           WT++I G        E+ + F+++           +SS++   A  A +++GK++H  AI
Sbjct: 245 WTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAI 304

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
            +    D+ V ++++DMY KCG I+EA  LF +M  RN ++W  MI G   HG   EAI 
Sbjct: 305 KVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIR 364

Query: 438 LFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF++M+ +  + D +++ AVL  C H GLVE GQ  F+ +   + I  R EHYACMVDLL
Sbjct: 365 LFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLL 424

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
           GRAGRL EA  ++ +M  E ++ +W  LL AC+ HG++EL +     L  L+ E+  N +
Sbjct: 425 GRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYV 484

Query: 557 LLTDLYANAG 566
           +++++YA+AG
Sbjct: 485 MMSNIYADAG 494



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 169/378 (44%), Gaps = 45/378 (11%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  G+ +H   + +G   +  +   +I  Y++C  I+ A  +F+ +P  N+  W A+  
Sbjct: 88  GLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIA 147

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF-- 210
            Y   G+ ++A+ +F +M   G   + F   S LKAC  L  I  G +IH+ ++   F  
Sbjct: 148 GYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLY 207

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             +  V  +LID+Y KCG +  A++VF  + EK +++  A++ GY Q G   E++ L  +
Sbjct: 208 SVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQ 267

Query: 271 IGTPRVK-----------------------------------PNVVTWNTLISGFSKSGD 295
           +    ++                                    ++   N+++  + K G 
Sbjct: 268 LRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGM 327

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                +LF  M A+    +V+SWT +I+G   +    EA   F EM      P   T  +
Sbjct: 328 INEAERLFSEMPAR----NVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLA 383

Query: 356 ILPACASAANMRRGKEIHG--CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS- 412
           +L  C+ +  + +G+E     C+   G++  +   + +VD+  + G + EA+ L D M  
Sbjct: 384 VLLGCSHSGLVEKGQEYFSRLCS-YHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPL 442

Query: 413 ERNTVTWNSMIFGCANHG 430
           E N   W +++  C  HG
Sbjct: 443 EANVGIWQTLLSACRVHG 460



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 179/399 (44%), Gaps = 77/399 (19%)

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
            FG D  + + LI MY KCG +  A  VFD M+++++V+  A++ G++Q G   E+L L 
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 269 EEIGTPRVKPNVVTW-----------------------------------NTLISGFSKS 293
            ++G   VKPN  T+                                   N++I  +SK 
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           G     + +F++M  +    +++SW ++I+G  V  FC ++A   F++M   G      T
Sbjct: 122 GRINEAACMFEVMPVR----NLISWNAMIAGYTVAGFC-EKALVLFQKMQEVGGFLDEFT 176

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLH--VRSALVDMYAKCGFISEARTLFDK 410
            +S L AC+    ++ G +IH   I  G    ++  V  AL+D+Y KCG +  AR +F  
Sbjct: 177 FTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSH 236

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELG 469
           + E++ ++W ++I G A  G   E++ELF Q+ E   ++D    ++++       LV+ G
Sbjct: 237 IEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG 296

Query: 470 QR----------------------------LFNMMQEKYKIMPRTE--HYACMVDLLGRA 499
           ++                            + N  +  +  MP      +  M+   G+ 
Sbjct: 297 KQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKH 356

Query: 500 GRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIE 535
           G   EA  +   M   STEPD   + A+L  C + G +E
Sbjct: 357 GLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVE 395



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 178/373 (47%), Gaps = 25/373 (6%)

Query: 93  ALQSGKILHAQLIVSGL--ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           A++ G  +HA LI  G   +  T +A  LI  Y +C  +  AR +F  I + ++  W AL
Sbjct: 189 AIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTAL 248

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              YA+ G   E++ +F ++    ++ + F++ S++      + +  G+++H+  +K   
Sbjct: 249 ILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPS 308

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           G D  V +S++DMY KCG + +A+++F EM  +++++   M++GY + GL  EA+ L +E
Sbjct: 309 GVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDE 368

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF-QLMRAKGVEPDVVSWTSVISGLVHNF 329
           +     +P+ VT+  ++ G S SG      + F +L    G++  V  +  ++  L    
Sbjct: 369 MQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAG 428

Query: 330 CNDEAFDTFKEMLSQGFCPTSATIS---SILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
              EA +    M      P  A +    ++L AC    ++  GKE+ G  + +  E  ++
Sbjct: 429 RLKEAKNLVDSM------PLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVN 482

Query: 387 VRSALVDMYAKCGFISEARTLFD-----KMSERNTVTWNSM-------IFGCANHGYCDE 434
               + ++YA  G+  E   + +     K+ +    +W  +         G   H   ++
Sbjct: 483 Y-VMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEK 541

Query: 435 AIELFNQMEERKK 447
             E+  +ME R K
Sbjct: 542 IHEILKEMERRMK 554



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 88/170 (51%), Gaps = 3/170 (1%)

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           MG   DL + + L+ MY KCG +  A  +FD+M +RN V+W +++ G   +G   E++ L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 439 FNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F++M     K +  +F+  L AC  +  +++G+++ ++  +    M      + ++D+  
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNS-IIDMYS 119

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           + GR+ EA  M + M    +L  W A++      G  E A +  + + E+
Sbjct: 120 KCGRINEAACMFEVMPVR-NLISWNAMIAGYTVAGFCEKALVLFQKMQEV 168


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 167/489 (34%), Positives = 262/489 (53%), Gaps = 62/489 (12%)

Query: 140 PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199
           P  +   W+    +  R    +EA++ + EM + G + + F  P+VLKA   L D+ TGE
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 200 KIHSLVLKHSFGTDAFVVS-SLIDMYSKCGS--------------------VEKAKKVFD 238
           +IH+  +K  +G+ +  V+ +L++MY KCG                     V+ +K +F+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNL----------VEEIGTPRVKPN--------- 279
             V++D+V+ N M+S + Q    +EAL            ++ +    V P          
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 280 -------VVTWNTLI-SGFSKSGDQVMVSKLFQLMRAKGVEPDVVS-----WTSVISGLV 326
                  V+  N LI + F  S    M     Q+   + V   ++      W ++ISG  
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 292

Query: 327 HNFCNDEAFDTFKEMLS-QGFCPTSATISSILPACA-SAANMRRGKEIHGCAIVMGVEGD 384
            N  +++A   F EM+   G  P + T++S++PAC  S A + +GKEIH  AI   +  D
Sbjct: 293 RNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASD 352

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           + V SALVDMYAKCG ++ +R +F++M  +N +TWN +I  C  HG  +EA+ELF  M  
Sbjct: 353 ITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVA 412

Query: 445 ------RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
                   K + ++F  V  AC H GL+  G  LF  M+  + + P ++HYAC+VDLLGR
Sbjct: 413 EAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGR 472

Query: 499 AGRLAEAYEMIKTMSTEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           AG+L EAYE++ TM  E D +  W +LLGAC+ H N+EL E+AAK+L  LEP  A++ +L
Sbjct: 473 AGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVL 532

Query: 558 LTDLYANAG 566
           L+++Y++AG
Sbjct: 533 LSNIYSSAG 541



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 160/329 (48%), Gaps = 19/329 (5%)

Query: 94  LQSGKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L  GK +HA ++ +  L   + + + L+  Y  C+ +   R +FD I    I  W A+  
Sbjct: 230 LDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMIS 289

Query: 153 AYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGH-LSDIGTGEKIHSLVLKHSF 210
            YAR G  ++A+ +F EM  + GL  N   + SV+ AC H L+ I  G++IH+  +++  
Sbjct: 290 GYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNML 349

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----N 266
            +D  V S+L+DMY+KCG +  +++VF+EM  K+++  N ++      G   EAL    N
Sbjct: 350 ASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKN 409

Query: 267 LVEEIGT-PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISG 324
           +V E G     KPN VT+ T+ +  S SG       LF  M+   GVEP    +  V+  
Sbjct: 410 MVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDL 469

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
           L      +EA++    M ++ F    A  SS+L AC    N+  G+        +  +  
Sbjct: 470 LGRAGQLEEAYELVNTMPAE-FDKVGA-WSSLLGACRIHQNVELGE--------VAAKNL 519

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSE 413
           LH+   +   Y     I  +  L++K  E
Sbjct: 520 LHLEPNVASHYVLLSNIYSSAGLWNKAME 548



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 193/423 (45%), Gaps = 30/423 (7%)

Query: 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           G+   T     L+  Y +   +  ++ LF+     ++  W  +  ++++     EA+  F
Sbjct: 143 GIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF 202

Query: 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSK 226
             M ++G++ +   I SVL AC HL  +  G++IH+ VL+++    ++FV S+L+DMY  
Sbjct: 203 RLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCN 262

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPRVKPNVVTWNT 285
           C  VE  ++VFD ++ + I   NAM+SGY + GL  +AL L +E I    + PN  T  +
Sbjct: 263 CRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMAS 322

Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF----CNDEAFDTFKEM 341
           ++     S   +   K    + A  +   + S  +V S LV  +    C + +   F EM
Sbjct: 323 VMPACVHSLAAIAKGK---EIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEM 379

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRS-ALVDMYAKC- 398
            ++       T + ++ AC          E+    +   G  G+        + ++A C 
Sbjct: 380 PNKNVI----TWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACS 435

Query: 399 --GFISEARTLFDKMSERNTVTWNSMIFGC-----ANHGYCDEAIELFNQMEERKKLDHL 451
             G ISE   LF +M   + V   S  + C        G  +EA EL N M    + D +
Sbjct: 436 HSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMP--AEFDKV 493

Query: 452 -SFTAVLTACCHVGLVELGQ-RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            +++++L AC     VELG+    N++  +  +     HY  + ++   AG   +A E+ 
Sbjct: 494 GAWSSLLGACRIHQNVELGEVAAKNLLHLEPNV---ASHYVLLSNIYSSAGLWNKAMEVR 550

Query: 510 KTM 512
           K M
Sbjct: 551 KNM 553



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 121/283 (42%), Gaps = 25/283 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  GK +HA  I + LA    + + L+  Y +C  ++ +R +F+E+P  N+  W  L  
Sbjct: 333 AIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIM 392

Query: 153 AYARRGYHQEAVTVFHEMHIQG-----LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           A    G  +EA+ +F  M  +       K N     +V  AC H   I  G  +    +K
Sbjct: 393 ACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF-YRMK 451

Query: 208 HSFGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEA 264
           H  G +      + ++D+  + G +E+A ++ + M  E D V   + + G  +     E 
Sbjct: 452 HDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVE- 510

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVI 322
           L  V       ++PNV +   L+S  +S +G      ++ + MR  GV+ +   SW    
Sbjct: 511 LGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE-F 569

Query: 323 SGLVHNFC-------NDEAFDTFKEMLS-----QGFCPTSATI 353
              VH F          E    F E LS     +G+ P ++ +
Sbjct: 570 RDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCV 612


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 255/437 (58%), Gaps = 17/437 (3%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            AR LF+E+P  N+  W A+ GAY R     +A  +F EM     +++     +++    
Sbjct: 251 EARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP----EKDSVSWTAMINGYV 306

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            +  +    +I +L+   +        +++I+ Y + G +++A ++F ++  +D V  N+
Sbjct: 307 RVGKLLQAREILNLMPYKNIAAQ----TAMINGYLQSGRMDEANEIFSQISVRDSVCWNS 362

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
           M++GY   G   EAL L +E+    V  ++V+WNT+I+ ++++G      ++F  M+   
Sbjct: 363 MITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQ--- 415

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
            E +VVSW S+I+G V N    EA + F  M  QG  P   TI   L A A+ A +  G 
Sbjct: 416 -ERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGV 474

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           ++H   I  G   DL V++A++ MYAK G + EA  +F ++  ++ V+WNS+I G A +G
Sbjct: 475 QLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNG 534

Query: 431 YCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
              EA+ELF  M  R  + D ++FT +L+AC H G V+ G  LF  M E Y I P++EHY
Sbjct: 535 CGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHY 594

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
           AC+++LLGR GRL EA E+++ M T     +WGALL AC+ H N+ELA+ +A+ L  LEP
Sbjct: 595 ACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEP 654

Query: 550 ESAANNMLLTDLYANAG 566
           ++A+N +LL++++A AG
Sbjct: 655 QNASNYVLLSNMHAEAG 671



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 190/389 (48%), Gaps = 33/389 (8%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++G+I +A+ +   + +   ++   +I  Y   + +  A  LFD + K +I+ W  +   
Sbjct: 58  KNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITC 117

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y R G  ++A  +F+ +     KQ+     +++            +K+   +L  +    
Sbjct: 118 YTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKN---- 170

Query: 214 AFVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             VVS  S++  Y+K G ++   + F+ M E+++V+ N MV GYV  G    A    ++I
Sbjct: 171 --VVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKI 228

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
            T    PNVV+W T++SGF+  G       LF  M  K    ++VSW ++I   V     
Sbjct: 229 PT----PNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK----NLVSWNAMIGAYVRENQI 280

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSA 390
           D+A+  F EM  +     +A I+  +         R GK +    I+ +    ++  ++A
Sbjct: 281 DDAYKLFMEMPEKDSVSWTAMINGYV---------RVGKLLQAREILNLMPYKNIAAQTA 331

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450
           +++ Y + G + EA  +F ++S R++V WNSMI G A+ G  DEA+ LF +M  +   D 
Sbjct: 332 MINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK---DM 388

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +S+  ++ A    G ++    +FN MQE+
Sbjct: 389 VSWNTMIAAYAQAGQMDKALEMFNEMQER 417



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 183/408 (44%), Gaps = 96/408 (23%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+ Y +   I +AR LFD +P+ N+  W ++   Y      ++A  +F  M        
Sbjct: 52  MISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM-------- 103

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
                                          F  D +  + +I  Y++ G +EKA+++F+
Sbjct: 104 -------------------------------FKRDIYSWTLMITCYTRIGELEKARELFN 132

Query: 239 EMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            + +K D V  NA+++GY ++ L  EA  L +E+    +  NVV+WN+++SG++K+G   
Sbjct: 133 LLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM----LVKNVVSWNSILSGYTKNGKMQ 188

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           +  + F+ M     E +VVSW  ++ G V     D A+  FK++      PT        
Sbjct: 189 LGLQFFEAMG----ERNVVSWNLMVDGYVGVGDLDSAWMFFKKI------PT-------- 230

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P   S   M  G                         +A  G ++EAR LF++M  +N V
Sbjct: 231 PNVVSWVTMLSG-------------------------FAHYGRMTEARNLFNEMPTKNLV 265

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           +WN+MI         D+A +LF +M E+   D +S+TA++     VG +   + + N+M 
Sbjct: 266 SWNAMIGAYVRENQIDDAYKLFMEMPEK---DSVSWTAMINGYVRVGKLLQAREILNLMP 322

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            K  I  +T     M++   ++GR+ EA E+   +S   D   W +++
Sbjct: 323 YK-NIAAQT----AMINGYLQSGRMDEANEIFSQISVR-DSVCWNSMI 364



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 97/176 (55%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I  Y +   +  A  +F+E+ + N+  W +L   Y + G + EA+  F  M  QG K +
Sbjct: 394 MIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPD 453

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              I   L+A  +L+ +  G ++H L +K  FG D FV ++++ MY+K G V +A+ VF 
Sbjct: 454 QTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFA 513

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           E+  KD+V+ N++++GY   G   EA+ L E +    + P+ VT+  L+S  +  G
Sbjct: 514 EIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGG 569



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 20/259 (7%)

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           N+VT+N++IS ++K+G      +LF LM  +    ++VSW S+I+G +HN   ++A   F
Sbjct: 45  NIVTYNSMISAYAKNGRIANARELFDLMPQR----NLVSWNSMIAGYLHNELVEDAARLF 100

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
             M  +     +  I+           + + +E+     ++  + D   R+AL+  YAK 
Sbjct: 101 DRMFKRDIYSWTLMITCY----TRIGELEKARELFN---LLPDKQDTVCRNALIAGYAKK 153

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLT 458
               EA+ LFD+M  +N V+WNS++ G   +G     ++ F  M ER   + +S+  ++ 
Sbjct: 154 RLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGER---NVVSWNLMVD 210

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
               VG ++     F     K    P    +  M+      GR+ EA  +   M T+ +L
Sbjct: 211 GYVGVGDLDSAWMFF-----KKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK-NL 264

Query: 519 FVWGALLGACKNHGNIELA 537
             W A++GA      I+ A
Sbjct: 265 VSWNAMIGAYVRENQIDDA 283



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 9/172 (5%)

Query: 367 RRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           R G+     A+ + + E ++   ++++  YAK G I+ AR LFD M +RN V+WNSMI G
Sbjct: 27  RSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
             ++   ++A  LF++M +R   D  S+T ++T    +G +E  + LFN++ +K   + R
Sbjct: 87  YLHNELVEDAARLFDRMFKR---DIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCR 143

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
                 ++    +     EA ++   M  + ++  W ++L     +G ++L 
Sbjct: 144 N----ALIAGYAKKRLFREAKKLFDEMLVK-NVVSWNSILSGYTKNGKMQLG 190



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G  LH   I +G      +   ++T Y +   +  A  +F EI   ++  W +L  
Sbjct: 469 ALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIA 528

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
            YA  G  +EAV +F  M ++G+  +      +L AC H   +  G  +  S+   +S  
Sbjct: 529 GYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIK 588

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
             +   + +I++  + G +E+A ++   M
Sbjct: 589 PQSEHYACVINLLGRVGRLEEAVEIVQGM 617


>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
          Length = 633

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 170/477 (35%), Positives = 266/477 (55%), Gaps = 26/477 (5%)

Query: 107 SGLARLTQIATKLITFYT--ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAV 164
           SGL     + +K+I+F +     ++ +A+ +F++    N      +  AYA+  +  +A+
Sbjct: 32  SGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTTMDNPFVCNTMIRAYAKSVFPIKAI 91

Query: 165 TVFHEMHIQGLKQNIFVIPSVLKACGHL-----SDIG--------TGEKIHSLVLKHSFG 211
            +++ MH + +K + F+ P  LKAC  +      DI          G +IH  + +    
Sbjct: 92  YLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLD 151

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ +SL+ +YS+CG ++ A++VFDEM EK I + N M+S Y Q      A +L   I
Sbjct: 152 QDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSL---I 208

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
           G+   K NVV+WN LI+ + + G       +FQ M     E D VSW S+I+G V     
Sbjct: 209 GSMPGK-NVVSWNMLIARYIRLGKIEDAKAVFQEMP----ERDAVSWNSMIAGYVQIKDY 263

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
             A   F+EM       T  T+ S+L ACA    +  G++IH        + + ++ +AL
Sbjct: 264 ARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNAL 323

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME---ERKKL 448
           VDMYAKCG ++ A  +F ++  ++   WN+MI   A HGYC+EA+ LF+ ME   +  + 
Sbjct: 324 VDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARP 383

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           + ++F  VL AC H GLV+ G++ FN M  +YKIMP  +HY CMVDLL R G L EA+ M
Sbjct: 384 NRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHM 443

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           IKTM  E +  +W  LLGAC+ H +++LAE + + L ++EP    + +LL+++YA A
Sbjct: 444 IKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEA 500



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 143/415 (34%), Gaps = 130/415 (31%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE------------------ 138
           G  +H +L   GL +   I   L+  Y++C  +  AR +FDE                  
Sbjct: 138 GAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQ 197

Query: 139 -------------IPKTNIHRWIALTGAYARRGYHQEAVTVFH----------------- 168
                        +P  N+  W  L   Y R G  ++A  VF                  
Sbjct: 198 INDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGY 257

Query: 169 --------------EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
                         EM I  ++     + SVL AC     +  G KIH  + +  +  + 
Sbjct: 258 VQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEG 317

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           ++ ++L+DMY+KCG +  A +VF E+  K I   NAM+      G   EAL L   +   
Sbjct: 318 YLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTME-- 375

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                                          M   G  P+ V++  V+    H    DE 
Sbjct: 376 -------------------------------MSVDGARPNRVTFIGVLIACSHKGLVDEG 404

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
              F  M+++           I+P              +GC +               D+
Sbjct: 405 RKFFNRMVNE---------YKIMPDIKH----------YGCMV---------------DL 430

Query: 395 YAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
            ++CG + EA  +   M  E N+V W +++  C  H + D A E F Q+ + + L
Sbjct: 431 LSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPL 485


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 179/537 (33%), Positives = 268/537 (49%), Gaps = 69/537 (12%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K +HA+++ +GL      A+KL T    +    + +AR LFD+IP+ N++ W  L  AYA
Sbjct: 42  KEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYA 101

Query: 156 RRGYHQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
                 ++  +F ++    + L  N F  P V+KA   L     G  +H + +K SFG D
Sbjct: 102 SSSDPFQSFVIFLDLLDKCEDLP-NKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMD 160

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            ++++SL+  Y  CG +  A+++F  +  KD+V+ N+M+S + Q     +AL L  ++  
Sbjct: 161 LYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMER 220

Query: 274 PRVKPNVVT------------------W-----------------NTLISGFSKSGDQVM 298
             V PN VT                  W                 N ++  ++K G    
Sbjct: 221 ENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDD 280

Query: 299 VSKLFQLMRAKGV---------------------------EPDVVSWTSVISGLVHNFCN 331
             KLF  M  + V                             ++ +W  +IS    N   
Sbjct: 281 AQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKP 340

Query: 332 DEAFDTFKEM-LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            EA   F E+ LS+   P   T+ S L ACA    +  G  IH      G+  + H+ S+
Sbjct: 341 KEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISS 400

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLD 449
           LVDMYAKCG + +A  +F  + ER+   W++MI G   HG    AI+LF +M+E K K +
Sbjct: 401 LVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPN 460

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++FT VL AC H GLV+ G+  F+ M+  Y ++P  +HYACMVD+LGRAG L EA E+I
Sbjct: 461 SVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELI 520

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             MST P   VWGALLGAC  H N+EL E+A+  L +LEP +    +LL+++YA  G
Sbjct: 521 NEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTG 577



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 113/253 (44%), Gaps = 31/253 (12%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G  +H  +   G+     + + L+  Y +C ++  A  +F  + + +++ W A+  
Sbjct: 375 AIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIA 434

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-------EKIHSLV 205
                G  + A+ +F EM    +K N     +VL AC H   +  G       E ++ +V
Sbjct: 435 GLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVV 494

Query: 206 --LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY------VQ 257
             +KH         + ++D+  + G +E+A ++ +EM      ++   + G       V+
Sbjct: 495 PEMKH--------YACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVE 546

Query: 258 RG-LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV 316
            G LA++ L  +E    PR    +V  + +   ++K+G    VS+L +LMR   ++ +  
Sbjct: 547 LGELASDQLLKLE----PRNHGAIVLLSNI---YAKTGRWEKVSELRKLMRDTELKKEPG 599

Query: 317 SWTSVISGLVHNF 329
             +   +G VH F
Sbjct: 600 CSSIEANGNVHEF 612


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 171/526 (32%), Positives = 270/526 (51%), Gaps = 35/526 (6%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARM 134
           LS  A    ++  I   +++ G+++HA+++ +  +     +A  LI  Y++  +   AR+
Sbjct: 4   LSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARL 63

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +    P  N+  W +L    A+ G+   A+  F EM  +G+  N F  P   KA   L  
Sbjct: 64  VLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRL 123

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
             TG++IH+L +K     D FV  S  DMY K    + A+K+FDE+ E+++   NA +S 
Sbjct: 124 PVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISN 183

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
            V  G   EA+    E       PN +T+   ++  S      +  +L  L+   G + D
Sbjct: 184 SVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTD 243

Query: 315 V-------------------------------VSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           V                               VSW S+++  V N  +++A   +     
Sbjct: 244 VSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRK 303

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
                +   ISS+L ACA  A +  G+ IH  A+   VE  + V SALVDMY KCG I +
Sbjct: 304 DIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIED 363

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTAVLTAC 460
           +   FD+M E+N VT NS+I G A+ G  D A+ LF +M  R      ++++F ++L+AC
Sbjct: 364 SEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSAC 423

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
              G VE G ++F+ M+  Y I P  EHY+C+VD+LGRAG +  AYE IK M  +P + V
Sbjct: 424 SRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISV 483

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           WGAL  AC+ HG  +L  +AA++L +L+P+ + N++LL++ +A AG
Sbjct: 484 WGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAG 529


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 274/504 (54%), Gaps = 55/504 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L + ++L     +S LAR   +A               AR +FD +P  ++  W AL  
Sbjct: 9   SLAARRLLRDNQRISALARAGDVAA--------------ARRVFDAMPHRDVVSWNALLT 54

Query: 153 AYARRGYHQ--EAVTVFHEMHIQGLKQNIFVIPSVLKAC---GHLS------------DI 195
           A  R G H    A  +F E       +++    S++  C   G L             ++
Sbjct: 55  ALWRAGRHHLPAARRLFDEAMPS---RDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNV 111

Query: 196 GTGEKIHSLVLKHSFGTDA----------FVVS--SLIDMYSKCGSVEKAKKVFDEMVEK 243
            T   + + +L+     DA           VVS  +++D  ++ G V +A++VFD M ++
Sbjct: 112 ATWNAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDR 171

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           ++V+  AM+SGYV+ G+  EA  L E +     + NVV    +I+ + K GD     +LF
Sbjct: 172 NLVSWAAMISGYVENGMFVEATKLFEAM----PEKNVVACTAMITSYCKQGDVESARRLF 227

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             +RAK    DV+SW ++I+G VHN   +EA      M  +G  P  AT+ ++L AC++ 
Sbjct: 228 DGIRAK----DVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSAL 283

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A +R+GK  H  AI   +E  +   +AL+ MY+KCG + E+  +F  +  ++ V+WN++I
Sbjct: 284 ALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTII 343

Query: 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              A HG   + I LF++ME    + D ++F +VL+AC HVG V+   +LF++M  KY I
Sbjct: 344 AAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAI 403

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            PR EHYAC+VD+L RAG+L +A   IK M  E +  VWG+LLGAC+ HGN++L E+AAK
Sbjct: 404 SPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAK 463

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L + + ES+   ++L+++YA AG
Sbjct: 464 MLVQSDSESSGPYVILSNIYAAAG 487



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T +IT Y +  ++  AR LFD I   ++  W  +   Y   G+ +EA+ +   M  +G+K
Sbjct: 208 TAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVK 267

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            +   + +VL AC  L+ +  G+  H++ +K    +     ++L+ MYSKCG+V +++ V
Sbjct: 268 PDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELV 327

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F  +  KDIV+ N +++ Y Q G   + + L  E+    + P+ +T+ +++S     G  
Sbjct: 328 FINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKV 387

Query: 297 VMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA---T 352
               KLF LM +K  + P    +  ++  L      ++A    K+M      P  A    
Sbjct: 388 DASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDM------PLEAEKNV 441

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV---DMYAKCGFISEARTLFD 409
             S+L AC    N++ G+     A  M V+ D       V   ++YA  G   +   +  
Sbjct: 442 WGSLLGACQMHGNVQLGE----LAAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRG 497

Query: 410 KMSER 414
           +M ER
Sbjct: 498 QMKER 502


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 179/551 (32%), Positives = 289/551 (52%), Gaps = 42/551 (7%)

Query: 55  LINGIFIEAHYKMPIISRSFHL-------SPAAYSERIEIYIRDRALQSGKILHAQLIVS 107
           L+ G +I+A   + ++S  F +       +P  +S  + +      +  G+ +HAQ I  
Sbjct: 128 LLTG-YIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKF 186

Query: 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           G      +   L+  Y +C  +  AR++F  +   ++  W  L       G   EA+ +F
Sbjct: 187 GCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLF 246

Query: 168 HEMH--IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYS 225
           H+    I  L ++ +   +V+  C +L  +G   ++HS VLKH F +   V+++L+D Y+
Sbjct: 247 HDSRSSITMLTESTY--STVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYN 304

Query: 226 KCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284
           K G ++KA  VF  M   +++V+  AM+ G +Q G    A  L   +    V PN +T++
Sbjct: 305 KAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYS 364

Query: 285 TLISGFSKS--------------------GDQVMVS--KLFQLMRAKGV-----EPDVVS 317
           T+++    S                    G  +MVS  KL     A  +     + DVVS
Sbjct: 365 TILTVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVS 424

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS-AANMRRGKEIHGCA 376
           W+++++        + A + F +M   G  P   TISS + ACAS AA +  G++ H  +
Sbjct: 425 WSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAIS 484

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           I       L V SALV MYA+ G I  A+ +F++ ++R+ ++WNSM+ G A HGY  +A+
Sbjct: 485 IKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKAL 544

Query: 437 ELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
           ++F QME E   +D L+F +V+  C H GLVE GQ+ F++M   Y I P  +HYACMVDL
Sbjct: 545 DVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDL 604

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
             RAG+L E   +I+ M       +W ALLGAC+ H N+EL ++AA+ L  LEP  +A  
Sbjct: 605 YSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATY 664

Query: 556 MLLTDLYANAG 566
           +LL+++Y+ AG
Sbjct: 665 VLLSNIYSAAG 675



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 214/479 (44%), Gaps = 43/479 (8%)

Query: 89  IRDRALQSGKILHAQLIVSGLAR-LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           + DR L  GK LHA  +  G      ++ T L+  Y    ++   R +F+ + K N+  W
Sbjct: 68  VPDRVL--GKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTW 125

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            +L   Y + G   + +++F  M  +G+  N F   SVL        +  G+ +H+  +K
Sbjct: 126 TSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIK 185

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
               +  FV +SL++MY+KCG VE+A+ VF  M  +D+V+ N +++G V  G   EAL L
Sbjct: 186 FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQL 245

Query: 268 VEEIGTPRVKPNVVTWNTLIS---------------------GFSKSGDQVMV-----SK 301
             +  +        T++T+I+                     GF   G+ +       +K
Sbjct: 246 FHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNK 305

Query: 302 LFQLMRAKGV------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             QL +A  V        +VVSWT++I G + N     A   F  M   G  P   T S+
Sbjct: 306 AGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYST 365

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           IL    + +      +IH   I    E    V +AL+  Y+K     EA ++F  + +++
Sbjct: 366 IL----TVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKD 421

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL-VELGQRLF 473
            V+W++M+   A  G C+ A   F +M     K +  + ++ + AC      V+LG R F
Sbjct: 422 VVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLG-RQF 480

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           + +  K++        + +V +  R G +  A + +    T+ DL  W ++L     HG
Sbjct: 481 HAISIKHRCHDALCVSSALVSMYARKGSIENA-QCVFERQTDRDLLSWNSMLSGYAQHG 538



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 169/338 (50%), Gaps = 37/338 (10%)

Query: 157 RGYHQEAVTVFHEMHI-QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK--HSFGTD 213
           +G+  +A+  F + H  QG       +  ++K CG + D   G+++H+L ++  H  G D
Sbjct: 32  QGFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHG-D 90

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +SL+DMY    SV   +KVF+ M+++++V   ++++GY+Q G+  + ++L   +  
Sbjct: 91  IRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRA 150

Query: 274 PRVKPNVVTWNTLISGFSKSG------------------DQVMVSKLFQLMRAKG--VEP 313
             V PN  T+++++S  +  G                    V V      M AK   VE 
Sbjct: 151 EGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEE 210

Query: 314 -----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                      D+VSW ++++GLV N  + EA   F +  S     T +T S+++  CA+
Sbjct: 211 ARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCAN 270

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNS 421
             ++   +++H   +  G     +V +AL+D Y K G + +A  +F  MS  +N V+W +
Sbjct: 271 LKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTA 330

Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLT 458
           MI GC  +G    A  LF++M E+    + L+++ +LT
Sbjct: 331 MIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT 368



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 10/220 (4%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAANMRRGKE 371
           P    WT   S     F + +A D F +    QG C     +  I+  C S  +   GK+
Sbjct: 18  PTRTPWTMPFSTTWQGFVH-QALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQ 76

Query: 372 IHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           +H   +  G + GD+ V ++LVDMY     + + R +F+ M +RN VTW S++ G    G
Sbjct: 77  LHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAG 136

Query: 431 YCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
              + + LF +M  E    +  +F++VL+     G+V+LGQ +     +  K    +  +
Sbjct: 137 VLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVH---AQSIKFGCCSTVF 193

Query: 490 AC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            C  ++++  + G + EA  +   M T  D+  W  L+  
Sbjct: 194 VCNSLMNMYAKCGLVEEARVVFCRMETR-DMVSWNTLMAG 232


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 156/474 (32%), Positives = 239/474 (50%), Gaps = 46/474 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LHA   + G      ++  LIT Y    ++  AR +FDE+P+ ++  W +L  A AR G+
Sbjct: 138 LHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARAGW 197

Query: 160 HQEAVTVFHEM------HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           ++E + +F E          G+  N   + SVL AC  L  +  G  +H    +     D
Sbjct: 198 YRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMD 257

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V +S+I  Y+KCG ++ A+++ D M  KD ++ +AM++GY+  G   E +        
Sbjct: 258 MAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGM-------- 309

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                                      +LF+   A+G+      W SVI+GLV N    +
Sbjct: 310 ---------------------------QLFRQASARGIS----MWNSVIAGLVQNGRQSD 338

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
                +EM++    P SAT+S ++P+  S + +   K+ HG AI    +  + + SAL+D
Sbjct: 339 VLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALID 398

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
            YAK GF+  AR +F     R+T+ W S+I   A HG   EA+ LFNQM     K D ++
Sbjct: 399 AYAKAGFLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVT 458

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           FT VL+AC H G V   +++FN MQ  + I P  E YACMV  L RAG L EA +++  M
Sbjct: 459 FTTVLSACAHSGKVAEARKVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKM 518

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             EP+  VWGALL      G++E    A   L  +EP++  N +++ +LY+NAG
Sbjct: 519 PFEPNAKVWGALLNGAAVVGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYSNAG 572



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 16/235 (6%)

Query: 312 EPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS---AANMR 367
           +P + +W +++  L +H+     A   F    S    P   T+S++L + A+   A +  
Sbjct: 77  QPSLFAWNAILISLSLHSPDPSAAVRLFA---SSAVSPDEITLSTLLRSLAASGPALSPL 133

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
              E+H  A + G   DL V +AL+  YA  G +  AR +FD+M  R+ V+WNS+I  CA
Sbjct: 134 VTGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACA 193

Query: 428 NHGYCDEAIELFNQMEERKKLD-------HLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
             G+  E ++LF +    +  D        ++ T+VL AC  + +V+ G  +     E  
Sbjct: 194 RAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESG 253

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             M     +  ++    + GRL  A +++  M T  D   + A++    N+G++E
Sbjct: 254 LDMDMAV-WNSIIGFYAKCGRLQYARQLLDGM-TRKDSISYSAMITGYMNNGHVE 306


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 174/527 (33%), Positives = 272/527 (51%), Gaps = 68/527 (12%)

Query: 108 GLARLTQIATKLITFYTECQNIH---HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAV 164
           GL       +KL+ F       H   +A  +F  I + N   W  +   +A       A+
Sbjct: 4   GLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISAL 63

Query: 165 TVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMY 224
            ++  M   GL  N +  P + K+C        G++IH+ +LK+    D  V +SLI MY
Sbjct: 64  NLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMY 123

Query: 225 SKCGSVE-------------------------------KAKKVFDEMVEKDIVAMNAMVS 253
           ++ G VE                               KA+K+FDE+  KD+V+ NAM+S
Sbjct: 124 AQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMIS 183

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-----QV----------- 297
           GY + G   EAL L  E+    VKP+  T  T++S  + SG+     Q+           
Sbjct: 184 GYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGS 243

Query: 298 ----------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
                     + SK  ++ RA G+       DV+SW ++I G  +   + EA   F+EML
Sbjct: 244 NLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEML 303

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGC--AIVMGVEGDLHVRSALVDMYAKCGF 400
             G  P   T+ SILPACA    +  G+ IH      + G+  +  ++++L+DMYAKCG 
Sbjct: 304 KLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGN 363

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           I  A  +FD +  ++  + N+MIFG A HG  D A +L ++M++   + D ++F  +L+A
Sbjct: 364 IEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSA 423

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C H GL +LG+++F  M   Y+I P+ EHY CM+DLLGR+G   EA E+I +M+ EPD  
Sbjct: 424 CSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGV 483

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +WG+LL ACK H N+EL E+ A+ L ++EP++  + +LL+++YA + 
Sbjct: 484 IWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSA 530


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 166/495 (33%), Positives = 260/495 (52%), Gaps = 25/495 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H +LI  G      +   LI  Y +   I  A  +FDE+P  ++  W ++  
Sbjct: 139 ALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVS 198

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G    ++  F EM   G K + F + S L AC     + +G +IH  V++     
Sbjct: 199 GYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELEL 258

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY----------------- 255
           D  V +SLIDMY KCG V+ A++VF+ +  K+IVA NAM+ G                  
Sbjct: 259 DIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLL 318

Query: 256 ---VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
               Q G   E  ++          P +V    L+  + K G+  +   +F  M     E
Sbjct: 319 PSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMN----E 374

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            ++VSW ++++  V N    EA   F+ +L++   P + TI+S+LPA A  A+   GK+I
Sbjct: 375 KNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQI 434

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H   + +G+  +  + +A+V MYAKCG +  AR  FD M  ++ V+WN+MI   A HG+ 
Sbjct: 435 HSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFG 494

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
             +I+ F++M  +  K +  +F ++LTAC   GL++ G   FN M+ +Y I P  EHY C
Sbjct: 495 RTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGC 554

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           M+DLLGR G L EA   I+ M   P   +WG+LL A +NH ++ LAE+AA+H+  L+ ++
Sbjct: 555 MLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDN 614

Query: 552 AANNMLLTDLYANAG 566
               +LL+++YA AG
Sbjct: 615 TGCYVLLSNMYAEAG 629



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 217/461 (47%), Gaps = 58/461 (12%)

Query: 109 LARLTQI-ATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           LAR   +  T+ +  + E   + +A  +F+++  ++   W  +   Y   G  QEA+  +
Sbjct: 53  LARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFY 112

Query: 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227
           + M  +G++ + F  P V+KACG L  +  G+K+H  ++K  F  D +V + LIDMY K 
Sbjct: 113 YRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKI 172

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGY----------------VQRGLATEALNLVEEI 271
           G +E A+KVFDEM  +D+V+ N+MVSGY                ++ G   +   ++  +
Sbjct: 173 GFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISAL 232

Query: 272 GT-------------------PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
           G                      ++ +++   +LI  + K G      ++F  + +K   
Sbjct: 233 GACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSK--- 289

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            ++V+W ++I G+  +                   P   T+ ++LP+C+ +  +  GK I
Sbjct: 290 -NIVAWNAMIGGMQED---------------DKVIPDVITMINLLPSCSQSGALLEGKSI 333

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           HG AI       L + +ALVDMY KCG +  A  +F++M+E+N V+WN+M+     +   
Sbjct: 334 HGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQY 393

Query: 433 DEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            EA+++F   + E  K D ++  +VL A   +     G+++ + +  K  +   T     
Sbjct: 394 KEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIM-KLGLGSNTFISNA 452

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +V +  + G L  A E    M  + D+  W  ++ A   HG
Sbjct: 453 IVYMYAKCGDLQTAREFFDGMVCK-DVVSWNTMIMAYAIHG 492



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 166/383 (43%), Gaps = 70/383 (18%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           +  L+SG  +H Q+I S L     + T LI  Y +C  + +A  +F+ I   NI  W A+
Sbjct: 238 EHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAM 297

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV------LKACGHLSDIGTGEKIHSL 204
            G                     G++++  VIP V      L +C     +  G+ IH  
Sbjct: 298 IG---------------------GMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGF 336

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            ++  F     + ++L+DMY KCG ++ A+ VF++M EK++V+ N MV+ YVQ     EA
Sbjct: 337 AIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEA 396

Query: 265 LNLVEEIGTPRVKPNVVTW------------------------------NTLISG----- 289
           L + + I    +KP+ +T                               NT IS      
Sbjct: 397 LKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYM 456

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL-VHNFCNDEAFDTFKEMLSQGFCP 348
           ++K GD     + F  M  K    DVVSW ++I    +H F    +   F EM  +GF P
Sbjct: 457 YAKCGDLQTAREFFDGMVCK----DVVSWNTMIMAYAIHGF-GRTSIQFFSEMRGKGFKP 511

Query: 349 TSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             +T  S+L AC+ +  +  G    +   +  G++  +     ++D+  + G + EA+  
Sbjct: 512 NGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCF 571

Query: 408 FDKMSERNTV-TWNSMIFGCANH 429
            ++M    T   W S++    NH
Sbjct: 572 IEEMPLVPTARIWGSLLAASRNH 594


>gi|91805385|gb|ABE65422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 272/540 (50%), Gaps = 79/540 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ILHAQ++ +G       AT L++ Y + + +  A  + DE+P+  I    A       
Sbjct: 50  GRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLE 109

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+ ++A  +F +  + G   N   + SVL  CG   DI  G ++H L +K  F  + +V
Sbjct: 110 NGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCG---DIEGGMQLHCLAMKSGFEMEVYV 166

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG---LATEALNLVEEIGT 273
            +SL+ MYS+CG    A ++F+++  K +V  NA +SG ++ G   L     NL+ +  +
Sbjct: 167 GTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRKFSS 226

Query: 274 PRVKPNVVTWNTLISG--------FSKSGDQVMVSKLFQLMRAKGV-------------- 311
              +PN VT+   I+         + +    +++ K FQ     G               
Sbjct: 227 E--EPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKS 284

Query: 312 ----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT--------- 352
                       +++SW SVISG++ N  ++ A + F+++ S+G  P SAT         
Sbjct: 285 AYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFS 344

Query: 353 --------------------------ISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
                                     ++S+L AC+    ++ GKEIHG  I    E D+ 
Sbjct: 345 QLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIF 404

Query: 387 VRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           V ++L+DMY KCG  S AR +FD+     R+ V WN MI G   HG C+ AIE+F  + E
Sbjct: 405 VLTSLIDMYMKCGLSSWARRIFDRFEPKPRDPVFWNVMISGYGKHGECESAIEIFELLRE 464

Query: 445 RKKLDHL-SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
            K    L +FTAVL+AC H G VE G ++F +MQE+Y   P TEH  CM+DLLGR+GRL 
Sbjct: 465 EKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLR 524

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA E+I  MS         +LLG+C+ H +  L E AA  L+ELEPE+ A  ++L+ +YA
Sbjct: 525 EAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYA 583



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 190/416 (45%), Gaps = 56/416 (13%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N F  P +LK+C  L D+  G  +H+ V+K  F  D F  ++L+ MY K   V  A KV 
Sbjct: 30  NKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVL 89

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT--------------- 282
           DEM E+ I ++NA VSG ++ G   +A  +  +        N VT               
Sbjct: 90  DEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCGDIEGGM 149

Query: 283 -----------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                              +L+S +S+ G+ V+ +++F+ +  K     VV++ + ISGL
Sbjct: 150 QLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHK----SVVTYNAFISGL 205

Query: 326 VHNFCND---EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           + N   +     F+  ++  S+   P   T  + + ACAS  N++ G+++HG  +    +
Sbjct: 206 MENGVMNLVPSVFNLMRKFSSEE--PNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQ 263

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQ 441
            +  V +AL+DMY+KC     A  +F ++ + RN ++WNS+I G   +G  + A+ELF +
Sbjct: 264 FETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEK 323

Query: 442 ME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           ++ E  K D  ++ ++++    +G V    + F  M     +        C+  LL    
Sbjct: 324 LDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMV----PSLKCLTSLLSACS 379

Query: 501 RL------AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
            +       E +  +   + E D+FV  +L+      G   L+  A +     EP+
Sbjct: 380 DIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCG---LSSWARRIFDRFEPK 432



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T   +L +CA   ++ +G+ +H   +  G   D+   +ALV MY K   +++A  +
Sbjct: 29  PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKV 88

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLV 466
            D+M ER   + N+ + G   +G+C +A  +F         ++ ++  +VL  C   G +
Sbjct: 89  LDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDI 145

Query: 467 ELGQRL 472
           E G +L
Sbjct: 146 EGGMQL 151


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 162/497 (32%), Positives = 261/497 (52%), Gaps = 41/497 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H+  + +G A    I + LI  Y+ C ++  A  +F  +   ++  + +L  A  R G 
Sbjct: 158 VHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGE 217

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
              AV V  +M  QGL+ N   + S+L  C      G GE+IH  +LK       +  ++
Sbjct: 218 LARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GIGEQIHGYMLKVMGSQSVYASTA 273

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID YS+ G    AK VF+ +  K++V+  +M+   ++ G   +AL +  E+ +  V+PN
Sbjct: 274 LIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPN 333

Query: 280 --------------------------------VVTWNTLISGFSKSGDQVMVSKLFQLMR 307
                                           +   N L+S + +SG    VS+L  ++ 
Sbjct: 334 EFAFSIALSACGSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSG---FVSELEAVL- 389

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            K   PD+VSWT+ IS    N  +++A     +M S+GF P     SS L +CA  A + 
Sbjct: 390 GKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLH 449

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +G+++H  A+ +G +  +   +AL++MY+KCG I  AR  FD M   + ++WNS+I G A
Sbjct: 450 QGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLA 509

Query: 428 NHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG  + A+E F++M     + D  +F +VL  C H GLV+ G+  F  M ++Y + P  
Sbjct: 510 QHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTP 569

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
            HYACM+D+LGR GR AEA  MI+ M  EPD+ +W  LL +CK H N+++ ++AA  L E
Sbjct: 570 SHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLME 629

Query: 547 LEPESAANNMLLTDLYA 563
           L    +A+ +L+++LYA
Sbjct: 630 LSERDSASYVLMSNLYA 646



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 206/438 (47%), Gaps = 47/438 (10%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           LFD +P+ N+  W        R G  + A T+F +M   G+  N F   + L AC     
Sbjct: 92  LFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAAAGA 151

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +G GE++HSL ++  F  DA++ S LI++YS+CGS+  A++VF  M   D+V   ++VS 
Sbjct: 152 LGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSA 211

Query: 255 YVQRGLATEALNLVEEIGTPRVKPN-------------------------------VVTW 283
             + G    A++++ ++    ++PN                               V   
Sbjct: 212 LCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGIGEQIHGYMLKVMGSQSVYAS 271

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
             LI  +S+ GD      +F+ + +K    +VVSW S++   + +   D+A   F EM+S
Sbjct: 272 TALIDFYSRYGDFGTAKTVFENLESK----NVVSWCSMMQLCIRDGRLDDALRVFSEMIS 327

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
           +G  P     S  L AC S      G++IH  AI   +  D+ V +AL+ MY + GF+SE
Sbjct: 328 EGVQPNEFAFSIALSACGSVC---LGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSE 384

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCH 462
              +  K+   + V+W + I     +G+ ++A+ L  QM  E    +  +F++ L++C  
Sbjct: 385 LEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCAD 444

Query: 463 VGLVELGQRLFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           + L+  G++L  +  +    +K+         ++++  + GR+  A      M T  D+ 
Sbjct: 445 LALLHQGRQLHCLALKLGCDFKVCTGN----ALINMYSKCGRIGSARLAFDVMDTH-DVM 499

Query: 520 VWGALLGACKNHGNIELA 537
            W +L+     HG+  LA
Sbjct: 500 SWNSLIHGLAQHGDANLA 517



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 157/354 (44%), Gaps = 51/354 (14%)

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN- 279
           +D   K G +  A  +FD M  K++VA    +SG  + G    A  +  ++    V PN 
Sbjct: 77  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPND 136

Query: 280 --------------------------------VVTW--NTLISGFSKSGDQVMVSKLFQL 305
                                              W  + LI  +S+ G      ++F+ 
Sbjct: 137 FACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRR 196

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M A    PDVV +TS++S L  N     A D   +M  QG  P   T++S+L  C     
Sbjct: 197 MEA----PDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGI- 251

Query: 366 MRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
              G++IHG  + VMG +  ++  +AL+D Y++ G    A+T+F+ +  +N V+W SM+ 
Sbjct: 252 ---GEQIHGYMLKVMGSQS-VYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQ 307

Query: 425 GCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
            C   G  D+A+ +F++M  E  + +  +F+  L+AC   G V LG R  +    K  +M
Sbjct: 308 LCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC---GSVCLG-RQIHCSAIKRDLM 363

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
                   ++ + GR+G ++E  E +      PDL  W A + A   +G  E A
Sbjct: 364 TDIRVSNALLSMYGRSGFVSE-LEAVLGKIENPDLVSWTAAISANFQNGFSEKA 416



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 2/162 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ LH   +  G          LI  Y++C  I  AR+ FD +   ++  W +L   
Sbjct: 448 LHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHG 507

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFGT 212
            A+ G    A+  F EM     + +     SVL  C H   +  GE     +  ++    
Sbjct: 508 LAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTP 567

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS 253
                + +IDM  + G   +A ++ + M  E D++    +++
Sbjct: 568 TPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLA 609



 Score = 45.8 bits (107), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 37/209 (17%)

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER------ 445
           +D   K G + +A  LFD+M  +N V W + I GC  +G  + A  +F  M E       
Sbjct: 77  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPND 136

Query: 446 -------------------KKLDHLSFTAVLTACCHVG--LVELGQRLFNM--MQEKYKI 482
                              +++  L+  A   A   +G  L+EL  R  ++   +E ++ 
Sbjct: 137 FACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRR 196

Query: 483 M--PRTEHYACMVDLLGRAGRLAEAYEMIKTMST---EPDLFVWGALLGACKNHGNIELA 537
           M  P    Y  +V  L R G LA A +++  M+    +P+     ++L  C   G  E  
Sbjct: 197 MEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECP-RGIGE-- 253

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           +I    L  +  +S   +  L D Y+  G
Sbjct: 254 QIHGYMLKVMGSQSVYASTALIDFYSRYG 282


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 167/513 (32%), Positives = 268/513 (52%), Gaps = 35/513 (6%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           I   +++ G+++HA+++ +  +     +A  LI  Y++  +   AR++    P  N+  W
Sbjct: 17  ISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSW 76

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            +L    A+ G+   A+  F EM  +G+  N F  P V KA   L    TG++IH+L +K
Sbjct: 77  TSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVK 136

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
                D FV  S  DMY K    + A+K+FDE+ E+++   NA +S  V  G   EA+  
Sbjct: 137 CGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEA 196

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV------------ 315
             E      +PN +T+   ++  S      +  ++  L+   G + DV            
Sbjct: 197 FIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGK 256

Query: 316 -------------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
                              VSW S+++  V N  +++A   +     +    +   ISS+
Sbjct: 257 CKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSV 316

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA  A +  G+ IH  A+   VE ++ V SALVDMY KCG I ++   FD+M E+N 
Sbjct: 317 LSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 376

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTAVLTACCHVGLVELGQRLF 473
           VT NS+I G A+ G  D A+ LF  M  R      ++++F ++L+AC   G VE G ++F
Sbjct: 377 VTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIF 436

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + M+  Y I P  EHY+C+VD+LGRAG + +A+E IK M  +P + VWGAL  AC+ HG 
Sbjct: 437 DSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGK 496

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             L  +AA++L +L+P+ + N++LL++ +A AG
Sbjct: 497 PHLGILAAENLFKLDPKDSGNHVLLSNTFAAAG 529


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 162/497 (32%), Positives = 261/497 (52%), Gaps = 41/497 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +H+  + +G A    I + LI  Y+ C ++  A  +F  +   ++  + +L  A  R G 
Sbjct: 158 VHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGE 217

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
              AV V  +M  QGL+ N   + S+L  C      G GE+IH  +LK       +  ++
Sbjct: 218 LARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GIGEQIHGYMLKVMGSQSVYASTA 273

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LID YS+ G    AK VF+ +  K++V+  +M+   ++ G   +AL +  E+ +  V+PN
Sbjct: 274 LIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPN 333

Query: 280 --------------------------------VVTWNTLISGFSKSGDQVMVSKLFQLMR 307
                                           +   N L+S + +SG    VS+L  ++ 
Sbjct: 334 EFAFSIALSACGSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSG---FVSELEAVL- 389

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            K   PD+VSWT+ IS    N  +++A     +M S+GF P     SS L +CA  A + 
Sbjct: 390 GKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLH 449

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           +G+++H  A+ +G +  +   +AL++MY+KCG I  AR  FD M   + ++WNS+I G A
Sbjct: 450 QGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLA 509

Query: 428 NHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            HG  + A+E F++M     + D  +F +VL  C H GLV+ G+  F  M ++Y + P  
Sbjct: 510 QHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTP 569

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
            HYACM+D+LGR GR AEA  MI+ M  EPD+ +W  LL +CK H N+++ ++AA  L E
Sbjct: 570 SHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLME 629

Query: 547 LEPESAANNMLLTDLYA 563
           L    +A+ +L+++LYA
Sbjct: 630 LSERDSASYVLMSNLYA 646



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 206/438 (47%), Gaps = 47/438 (10%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           LFD +P+ N+  W        R G  + A T+F +M   G+  N F   + L AC     
Sbjct: 92  LFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAAAGA 151

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +G GE++HSL ++  F  DA++ S LI++YS+CGS+  A++VF  M   D+V   ++VS 
Sbjct: 152 LGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSA 211

Query: 255 YVQRGLATEALNLVEEIGTPRVKPN-------------------------------VVTW 283
             + G    A++++ ++    ++PN                               V   
Sbjct: 212 LCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGIGEQIHGYMLKVMGSQSVYAS 271

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
             LI  +S+ GD      +F+ + +K    +VVSW S++   + +   D+A   F EM+S
Sbjct: 272 TALIDFYSRYGDFGTAKTVFENLESK----NVVSWCSMMQLCIRDGRLDDALRVFSEMIS 327

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
           +G  P     S  L AC S      G++IH  AI   +  D+ V +AL+ MY + GF+SE
Sbjct: 328 EGVQPNEFAFSIALSACGSVC---LGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSE 384

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCH 462
              +  K+   + V+W + I     +G+ ++A+ L  QM  E    +  +F++ L++C  
Sbjct: 385 LEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCAD 444

Query: 463 VGLVELGQRLFNMMQE---KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           + L+  G++L  +  +    +K+         ++++  + GR+  A      M T  D+ 
Sbjct: 445 LALLHQGRQLHCLALKLGCDFKVCTGN----ALINMYSKCGRIGSARLAFDVMDTH-DVM 499

Query: 520 VWGALLGACKNHGNIELA 537
            W +L+     HG+  LA
Sbjct: 500 SWNSLIHGLAQHGDANLA 517



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 157/354 (44%), Gaps = 51/354 (14%)

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN- 279
           +D   K G +  A  +FD M  K++VA    +SG  + G    A  +  ++    V PN 
Sbjct: 77  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPND 136

Query: 280 --------------------------------VVTW--NTLISGFSKSGDQVMVSKLFQL 305
                                              W  + LI  +S+ G      ++F+ 
Sbjct: 137 FACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRR 196

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
           M A    PDVV +TS++S L  N     A D   +M  QG  P   T++S+L  C     
Sbjct: 197 MEA----PDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGI- 251

Query: 366 MRRGKEIHGCAI-VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
              G++IHG  + VMG +  ++  +AL+D Y++ G    A+T+F+ +  +N V+W SM+ 
Sbjct: 252 ---GEQIHGYMLKVMGSQS-VYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQ 307

Query: 425 GCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
            C   G  D+A+ +F++M  E  + +  +F+  L+AC   G V LG R  +    K  +M
Sbjct: 308 LCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC---GSVCLG-RQIHCSAIKRDLM 363

Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
                   ++ + GR+G ++E  E +      PDL  W A + A   +G  E A
Sbjct: 364 TDIRVSNALLSMYGRSGFVSE-LEAVLGKIENPDLVSWTAAISANFQNGFSEKA 416



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 2/162 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G+ LH   +  G          LI  Y++C  I  AR+ FD +   ++  W +L   
Sbjct: 448 LHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHG 507

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFGT 212
            A+ G    A+  F EM     + +     SVL  C H   +  GE     +  ++    
Sbjct: 508 LAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTP 567

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVS 253
                + +IDM  + G   +A ++ + M  E D++    +++
Sbjct: 568 TPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLA 609


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 255/437 (58%), Gaps = 17/437 (3%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
            AR LF+E+P  N+  W A+ GAY R     +A  +F EM     +++     +++    
Sbjct: 251 EARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP----EKDSVSWTAMINGYV 306

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
            +  +    +I +L+   +        +++I+ Y + G +++A ++F ++  +D V  N+
Sbjct: 307 RVGKLLQAREILNLMPYKNIAAQ----TAMINGYLQSGRMDEANEIFSQISVRDSVCWNS 362

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
           M++GY   G   EAL L +E+    V  ++V+WNT+I+ ++++G      ++F  M+   
Sbjct: 363 MITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQ--- 415

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
            E +VVSW S+I+G V N    EA + F  M  QG  P   TI   L A A+ A +  G 
Sbjct: 416 -ERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGV 474

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           ++H   I  G   DL V++A++ MYAK G + EA  +F ++  ++ V+WNS+I G A +G
Sbjct: 475 QLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNG 534

Query: 431 YCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
              EA+ELF  M  R  + D ++FT +L+AC H G V+ G  LF  M E Y I P++EHY
Sbjct: 535 CGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHY 594

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
           AC+++LLGR GRL EA E+++ M T     +WGALL AC+ H N+ELA+ +A+ L  LEP
Sbjct: 595 ACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEP 654

Query: 550 ESAANNMLLTDLYANAG 566
           ++A+N +LL++++A AG
Sbjct: 655 QNASNYVLLSNMHAEAG 671



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 190/389 (48%), Gaps = 33/389 (8%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++G+I +A+ +   + +   ++   +I  Y   + +  A  LFD + K +I+ W  +   
Sbjct: 58  KNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITC 117

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y R G  ++A  +F+ +     KQ+     +++            +K+   +L  +    
Sbjct: 118 YTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKN---- 170

Query: 214 AFVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
             VVS  S++  Y+K G ++   + F+ M E+++V+ N MV GYV  G    A    ++I
Sbjct: 171 --VVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKI 228

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
            T    PNVV+W T++SGF+  G       LF  M  K    ++VSW ++I   V     
Sbjct: 229 PT----PNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK----NLVSWNAMIGAYVRENQI 280

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSA 390
           D+A+  F EM  +     +A I+  +         R GK +    I+ +    ++  ++A
Sbjct: 281 DDAYKLFMEMPEKDSVSWTAMINGYV---------RVGKLLQAREILNLMPYKNIAAQTA 331

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450
           +++ Y + G + EA  +F ++S R++V WNSMI G A+ G  DEA+ LF +M  +   D 
Sbjct: 332 MINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK---DM 388

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +S+  ++ A    G ++    +FN MQE+
Sbjct: 389 VSWNTMIAAYAQAGQMDKALEMFNEMQER 417



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 183/408 (44%), Gaps = 96/408 (23%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+ Y +   I +AR LFD +P+ N+  W ++   Y      ++A  +F  M        
Sbjct: 52  MISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM-------- 103

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
                                          F  D +  + +I  Y++ G +EKA+++F+
Sbjct: 104 -------------------------------FKRDIYSWTLMITCYTRIGELEKARELFN 132

Query: 239 EMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            + +K D V  NA+++GY ++ L  EA  L +E+    +  NVV+WN+++SG++K+G   
Sbjct: 133 LLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM----LVKNVVSWNSILSGYTKNGKMQ 188

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           +  + F+ M     E +VVSW  ++ G V     D A+  FK++      PT        
Sbjct: 189 LGLQFFEAMG----ERNVVSWNLMVDGYVGVGDLDSAWMFFKKI------PT-------- 230

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           P   S   M  G                         +A  G ++EAR LF++M  +N V
Sbjct: 231 PNVVSWVTMLSG-------------------------FAHYGRMTEARNLFNEMPTKNLV 265

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           +WN+MI         D+A +LF +M E+   D +S+TA++     VG +   + + N+M 
Sbjct: 266 SWNAMIGAYVRENQIDDAYKLFMEMPEK---DSVSWTAMINGYVRVGKLLQAREILNLMP 322

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            K  I  +T     M++   ++GR+ EA E+   +S   D   W +++
Sbjct: 323 YK-NIAAQT----AMINGYLQSGRMDEANEIFSQISVR-DSVCWNSMI 364



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 97/176 (55%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I  Y +   +  A  +F+E+ + N+  W +L   Y + G + EA+  F  M  QG K +
Sbjct: 394 MIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPD 453

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
              I   L+A  +L+ +  G ++H L +K  FG D FV ++++ MY+K G V +A+ VF 
Sbjct: 454 QTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFA 513

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           E+  KD+V+ N++++GY   G   EA+ L E +    + P+ VT+  L+S  +  G
Sbjct: 514 EIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGG 569



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 20/259 (7%)

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           N+VT+N++IS ++K+G      +LF LM  +    ++VSW S+I+G +HN   ++A   F
Sbjct: 45  NIVTYNSMISAYAKNGRIANARELFDLMPQR----NLVSWNSMIAGYLHNELVEDAARLF 100

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
             M  +     +  I+           + + +E+     ++  + D   R+AL+  YAK 
Sbjct: 101 DRMFKRDIYSWTLMITCY----TRIGELEKARELFN---LLPDKQDTVCRNALIAGYAKK 153

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLT 458
               EA+ LFD+M  +N V+WNS++ G   +G     ++ F  M ER   + +S+  ++ 
Sbjct: 154 RLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGER---NVVSWNLMVD 210

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
               VG ++     F     K    P    +  M+      GR+ EA  +   M T+ +L
Sbjct: 211 GYVGVGDLDSAWMFF-----KKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK-NL 264

Query: 519 FVWGALLGACKNHGNIELA 537
             W A++GA      I+ A
Sbjct: 265 VSWNAMIGAYVRENQIDDA 283



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 9/172 (5%)

Query: 367 RRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           R G+     A+ + + E ++   ++++  YAK G I+ AR LFD M +RN V+WNSMI G
Sbjct: 27  RSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
             ++   ++A  LF++M +R   D  S+T ++T    +G +E  + LFN++ +K   + R
Sbjct: 87  YLHNELVEDAARLFDRMFKR---DIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCR 143

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
                 ++    +     EA ++   M  + ++  W ++L     +G ++L 
Sbjct: 144 N----ALIAGYAKKRLFREAKKLFDEMLVK-NVVSWNSILSGYTKNGKMQLG 190



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451
           +    + G I EA  +F KM+ERN VT+NSMI   A +G    A ELF+ M +R   + +
Sbjct: 22  ISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQR---NLV 78

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           S+ +++    H  LVE   RLF+ M ++         +  M+    R G L +A E+   
Sbjct: 79  SWNSMIAGYLHNELVEDAARLFDRMFKR-----DIYSWTLMITCYTRIGELEKARELFNL 133

Query: 512 MSTEPDLFVWGALLGA 527
           +  + D     AL+  
Sbjct: 134 LPDKQDTVCRNALIAG 149



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G  LH   I +G      +   ++T Y +   +  A  +F EI   ++  W +L  
Sbjct: 469 ALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIA 528

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
            YA  G  +EAV +F  M ++G+  +      +L AC H   +  G  +  S+   +S  
Sbjct: 529 GYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIK 588

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
             +   + +I++  + G +E+A ++   M
Sbjct: 589 PQSEHYACVINLLGRVGRLEEAVEIVQGM 617


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/474 (33%), Positives = 261/474 (55%), Gaps = 19/474 (4%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           Q+G +  A+ I   +    +I+   L++ Y +   I  AR LFD      I  W  L G 
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGG 224

Query: 154 YARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y R+    +A ++F  M ++  +  NI +        G LS+         L ++     
Sbjct: 225 YVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQN--GLLSE--ARRLFEELPIR----- 275

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  ++++  + + G +++A ++F+EM EK+ V+ NAM++GYVQ     +A  L +++ 
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMP 335

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
           +     N  +WNT+++G+++ G+      LF  M  +    D +SW ++ISG   +  ++
Sbjct: 336 SR----NTSSWNTMVTGYAQCGNIDQAKILFDEMPQR----DCISWAAMISGYAQSGQSE 387

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F +M   G     + ++  L +CA  A +  GK++HG  +  G +      +AL+
Sbjct: 388 EALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALL 447

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS 452
            MY KCG I EA  +F+ ++E++ V+WN+MI G A HG+  EA+ LF  M+   K D ++
Sbjct: 448 AMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVT 507

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
              VL+AC H GLV+ G   FN M + Y I    +HY CM+DLLGRAGRL EA  ++K+M
Sbjct: 508 LVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSM 567

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              PD   WGALLGA + HG+ EL E AA+ + E+EP+++   +LL++LYA +G
Sbjct: 568 PFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASG 621



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 202/447 (45%), Gaps = 69/447 (15%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           I  ++I +W     AY R+G  + A++VF+     G+++   V  + +   G+LS+    
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFN-----GMRRRSTVTYNAM-ISGYLSN--NK 106

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
                 V +     D    + ++  Y K G++  A+ +F++M EKD+V+ NAM+SG+ Q 
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-------------- 304
           G   EA  + +++    +  N ++WN L+S + ++G      +LF               
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLM 222

Query: 305 --LMRAKGVEP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
              +R K ++            D +SW  +I+G   N    EA   F+E+  +     +A
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 352 TISSIL------PACASAANMRRGKEIHGCAIVMGVEGDLHVRSA--------------- 390
            +S  +       A      M    E+   A++ G      +  A               
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW 342

Query: 391 --LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK- 447
             +V  YA+CG I +A+ LFD+M +R+ ++W +MI G A  G  +EA+ LF +M+     
Sbjct: 343 NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGI 402

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEA 505
           L+  +    L++C  +  +ELG++L   +    K   +T + A   ++ + G+ G + EA
Sbjct: 403 LNRSALACALSSCAEIAALELGKQLHGRL---VKAGFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHG 532
           +++ + + TE D+  W  ++     HG
Sbjct: 460 FDVFEDI-TEKDIVSWNTMIAGYARHG 485



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 147/327 (44%), Gaps = 48/327 (14%)

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNL---------------------------VEEIG 272
           +V+ DIV  N  +S Y+++G    AL++                             ++ 
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                 ++++WN ++SG+ K+G+      LF  M     E DVVSW +++SG   N   +
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSAARALFNQM----PEKDVVSWNAMLSGFAQNGFVE 170

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F +ML         + + +L A      +   + +    +    + ++   + L+
Sbjct: 171 EARKIFDQML----VKNEISWNGLLSAYVQNGRIEDARRLFDSKM----DWEIVSWNCLM 222

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS 452
             Y +   + +AR+LFD+M  R+ ++WN MI G A +G   EA  LF ++  R   D  +
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR---DVFA 279

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           +TA+++     G+++   R+F  M EK ++      +  M+    ++ ++ +A E+   M
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIEKARELFDQM 334

Query: 513 STEPDLFVWGALLGACKNHGNIELAEI 539
            +  +   W  ++      GNI+ A+I
Sbjct: 335 PSR-NTSSWNTMVTGYAQCGNIDQAKI 360



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 12/226 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK LH +L+ +G          L+  Y +C +I  A  +F++I + +I  W  +  
Sbjct: 420 ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIA 479

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
            YAR G+ +EA+ +F  M +  +K +   +  VL AC H   +  G E  +S+   +   
Sbjct: 480 GYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGIT 538

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALNL 267
            +A   + +ID+  + G +++A  +   M    D     A++      G   L  +A   
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598

Query: 268 VEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVE 312
           V E+     +P+      L+S  ++ SG    V ++   MR KGV+
Sbjct: 599 VFEM-----EPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVK 639


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 170/524 (32%), Positives = 273/524 (52%), Gaps = 38/524 (7%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P  ++  +       A+  G+ +HAQ +  G      +   LI  Y++C  +  A+ +F
Sbjct: 200 NPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVF 259

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
            ++   ++  W  L        +  EA+ +FH+      K +     +V+K C +L  + 
Sbjct: 260 RQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLA 319

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGY 255
              ++HS VLKH F +D  V+++++D YSKCG ++ A  +F  M   +++V+  AM+ G 
Sbjct: 320 LARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGC 379

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNT------------------------------ 285
           +Q      A  L   +    VKPN  T++T                              
Sbjct: 380 IQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGT 439

Query: 286 -LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
            L++ +SK G+      +F+++  K    DVV+W++++S        D A + F +M  Q
Sbjct: 440 ALLASYSKLGNTEEALSIFKMIDHK----DVVAWSAMLSCYSQAGDCDGATNVFIKMSMQ 495

Query: 345 GFCPTSATISSILPACAS-AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
           G  P   TISS + ACAS  A + +G++ H  +I    +  + V SALV MYA+ G I  
Sbjct: 496 GMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDS 555

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCH 462
           AR +F++ ++R+ V+WNSMI G A HGY  EA++ F QME    ++D  +F AV+  C H
Sbjct: 556 ARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTH 615

Query: 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
            GLV+ GQ+ F+ M   + I P  EHY+CMVDL  RAG+L E   +I+ M       VW 
Sbjct: 616 AGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWR 675

Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            LLGAC+ H N+EL ++AA+ L  LEP+ +A  +LL+++YA AG
Sbjct: 676 TLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAG 719



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 219/503 (43%), Gaps = 51/503 (10%)

Query: 70  ISRSFHLSPAAYSERIEI--YIRDRALQSGKILHAQLIVSGLARL-TQIATKLITFYTEC 126
           + R   +  AA S  +++   I DR   SG+ LH   +  G  R    + T L+  Y +C
Sbjct: 91  VHRCGRVQGAAVSRVLKVCGLIPDRV--SGEQLHCLCVKCGFDRAEVGVGTALVDMYMKC 148

Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
             +   R++F+ +PK N+  W +L   Y +     + + +F  M  +G+  N F   SVL
Sbjct: 149 GGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVL 208

Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
            A      +  G ++H+  +K    +  FV +SLI+MYSKCG VE+AK VF +M  +D+V
Sbjct: 209 SAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMV 268

Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI------------------- 287
           + N +++G +      EAL L  +      K +  T++T+I                   
Sbjct: 269 SWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCV 328

Query: 288 ----------------SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                             +SK G+      +F LM       +VVSWT++I G + N   
Sbjct: 329 LKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPG---SQNVVSWTAMIGGCIQNADI 385

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
             A   F  M      P   T S++L A           +IH   I    +    V +AL
Sbjct: 386 PLAAALFSRMREDNVKPNEFTYSTVLTASIPILL----PQIHAQIIKTNYQHAPSVGTAL 441

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDH 450
           +  Y+K G   EA ++F  +  ++ V W++M+   +  G CD A  +F +M  +  K + 
Sbjct: 442 LASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNE 501

Query: 451 LSFTAVLTACCH-VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            + ++ + AC      ++ G R F+ +  KY+        + +V +  R G +  A  ++
Sbjct: 502 FTISSAIDACASPTAGIDQG-RQFHAISIKYRYQDAICVGSALVTMYARKGSIDSA-RIV 559

Query: 510 KTMSTEPDLFVWGALLGACKNHG 532
               T+ DL  W +++     HG
Sbjct: 560 FERQTDRDLVSWNSMISGYAQHG 582


>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
          Length = 794

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 265/477 (55%), Gaps = 5/477 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T ++ FY +   I +A M+FD + + ++  W  L  
Sbjct: 253 GIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLIS 312

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  +EA+ +   M  + LK +   + +++ A     ++  G++I    ++H   +
Sbjct: 313 GYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLES 372

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY+KCGS+  AKKVFD  V+KD++  N ++S Y   GL+ EAL L  E+ 
Sbjct: 373 DIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQ 432

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+TWN +I    ++G      ++F  M++ G+ P+++SWT++++GLV N C++
Sbjct: 433 LESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSE 492

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++M      P + TI+  L ACA+ A++  G+ IHG  I          + ++L
Sbjct: 493 EAILFLRKMQESRLRPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSASIETSL 552

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDH 450
           VDMYAKCG I++A  +F          +N+MI   A +G   EAI L+  +E+   K D+
Sbjct: 553 VDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDN 612

Query: 451 LSFTAVLTACCHVGL-VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           ++ T++L+  C+ G  V     +F+ M  K+ + P  EHY  MVDLL  AG   +A  ++
Sbjct: 613 ITITSLLS--CNYGRDVNQAIEVFSDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLM 670

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + M  +PD  +  +L  +C      EL E  +KHL E EP+++ N +++++ YA  G
Sbjct: 671 EEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHLLESEPDNSGNYVMISNAYAVEG 727



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 259/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  Y E ++  + +R L +G+ +HAQ++  G   AR   I TKL+ FY +C  +
Sbjct: 28  RNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDAL 87

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             A++LF ++   N+  W A+ G   R G  + A+  F EM   G+  + FV+P+V KAC
Sbjct: 88  EIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKAC 147

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V K       FV SSL DMY KCG ++ A+KVFD + +++ VA N
Sbjct: 148 GALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWN 207

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           A++ GYVQ G+  EA+ L+ E+    ++P  VT +T +S  +  G               
Sbjct: 208 ALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVN 267

Query: 295 ----DQVMVSKLFQLMRAKG------------VEPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + +       G            +E DVV+W  +ISG V     +EA    
Sbjct: 268 GLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMC 327

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++ A  S  N++ GKEI    I  G+E D+ + S  VDMYAKC
Sbjct: 328 QLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKC 387

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G I  A+ +FD   +++ + WN+++   A+ G   EA+ LF +M+ E    + +++  ++
Sbjct: 388 GSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLII 447

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--- 514
            +    G V   + +F  MQ    I P    +  M++ L + G   EA   ++ M     
Sbjct: 448 LSLLRNGQVNEAKEMFLQMQSS-GIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESRL 506

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
            P+ F     L AC N  ++        ++  ++    SA+    L D+YA  G
Sbjct: 507 RPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCG 560



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/476 (22%), Positives = 229/476 (48%), Gaps = 16/476 (3%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  +  +GL     +A+ L   Y +C  +  AR +FD IP  N   W AL   Y +
Sbjct: 156 GRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQ 215

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  EM  +G++     + + L A  ++  I  G++ H++ + +    D  +
Sbjct: 216 NGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNIL 275

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +S+++ Y K G +E A+ +FD M+EKD+V  N ++SGYVQ+GL  EA+ + + +    +
Sbjct: 276 GTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENL 335

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           K + VT +TL+S  + + +  +  ++       G+E D+V  ++ +           A  
Sbjct: 336 KFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKK 395

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F   + +     +  +S+   +  S   +R   E+     +  V  ++   + ++    
Sbjct: 396 VFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQ----LESVPPNVITWNLIILSLL 451

Query: 397 KCGFISEARTLFDKMSER----NTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHL 451
           + G ++EA+ +F +M       N ++W +M+ G   +G  +EAI    +M+E R + +  
Sbjct: 452 RNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESRLRPNAF 511

Query: 452 SFTAVLTACCHVGLVELGQRL--FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
           + T  L+AC ++  +  G+ +  + +  ++Y      E    +VD+  + G + +A E +
Sbjct: 512 TITVALSACANLASLHFGRSIHGYIIRNQQYSFSASIE--TSLVDMYAKCGDINKA-ERV 568

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLTDLYA 563
                  +L ++ A++ A   +G +  A    + L +  ++P++     LL+  Y 
Sbjct: 569 FGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSCNYG 624



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 212/444 (47%), Gaps = 47/444 (10%)

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--FGTD 213
           + G  +EA+++  EM  + ++    +   +L+ C +  D+ TG++IH+ +LK    +  +
Sbjct: 11  KNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARN 70

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL----NLVE 269
            ++ + L+  Y+KC ++E A+ +F ++  +++ +  A++    + GL   AL     ++E
Sbjct: 71  EYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLE 130

Query: 270 EIGTPR--VKPNV------VTWNTLISG--------------FSKSGDQVMVSKLFQLMR 307
               P   V PNV      + W+    G              F  S    M  K   L  
Sbjct: 131 NGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDD 190

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A+ V     + + V+W +++ G V N  N+EA     EM  +G  PT  T+S+ L A A+
Sbjct: 191 ARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASAN 250

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
              +  GK+ H  AIV G+E D  + +++++ Y K G I  A  +FD M E++ VTWN +
Sbjct: 251 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLL 310

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G    G  +EAI +   M  E  K D ++ + +++A      ++LG+ +     + Y 
Sbjct: 311 ISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEI-----QCYC 365

Query: 482 IMPRTEHYACM----VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           I    E    +    VD+  + G +  A ++  + + + DL +W  LL A  + G   L+
Sbjct: 366 IRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDS-TVQKDLILWNTLLSAYADSG---LS 421

Query: 538 EIAAKHLSELEPESAANNMLLTDL 561
             A +   E++ ES   N++  +L
Sbjct: 422 GEALRLFYEMQLESVPPNVITWNL 445



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 14/235 (5%)

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           +S L  N    EA     EM  +           IL  C    ++  G++IH   +    
Sbjct: 6   VSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILK--- 62

Query: 382 EGDLHVR-----SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           +GD + R     + LV  YAKC  +  A+ LF K+  RN  +W ++I      G  + A+
Sbjct: 63  KGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGAL 122

Query: 437 ELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
             F +M E     D+     V  AC  +     G+ +   +  K  +       + + D+
Sbjct: 123 MGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVA-KAGLHHCVFVASSLADM 181

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
            G+ G L +A ++   +  + +   W AL+     +G   + E A + LSE+  E
Sbjct: 182 YGKCGVLDDARKVFDYIP-DRNAVAWNALMVGYVQNG---MNEEAIRLLSEMRKE 232


>gi|225456926|ref|XP_002278116.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g64310-like [Vitis vinifera]
          Length = 560

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 175/505 (34%), Positives = 271/505 (53%), Gaps = 32/505 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L   K LHA +I + L+     AT+++ FY    ++  AR LFD     +++ W ++ 
Sbjct: 23  QTLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSYRSVYLWNSVI 82

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYA      +A+ +F +M    +K + F    VL+AC    D      +H  V+    G
Sbjct: 83  RAYAGEHQFDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRVVHGGVVVSGLG 142

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D+   S+L+  YSK   V++A +VF  M E D+V  NAM +GY   G   + L L   +
Sbjct: 143 FDSVCGSALVTAYSKLCMVDEASRVFYGMAEPDLVLWNAMAAGYGYCGFWDKGLQLFSAM 202

Query: 272 GTPRVKPNVVTWNTLISGFSKS--------------------GDQV------MVSKLFQL 305
            +   +P+  T   LISG +                       D V      M S+   L
Sbjct: 203 RSMGEQPDSYTMVGLISGLADPSLLGIGKGIHGFCLKSSFDCNDHVGSALVSMYSRCHCL 262

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             A GV     +PD+V+W+++I+GL  +   ++A   F++M  +G       I+S+L A 
Sbjct: 263 NSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFRKMNMEGKRVDPILIASVLAAS 322

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
             +A +  G EIHG  +  G+E ++ + SAL+DMY+KCGF++    +FD M  RNTV++N
Sbjct: 323 GQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSKCGFVNLGVRVFDSMPNRNTVSYN 382

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           SMI G   HG   +A ++F ++ E+  K D  +F+A+L  CCH GLV+ G+ +F+ M E+
Sbjct: 383 SMILGLGIHGLAPQAFKMFEEVLEKGFKPDESTFSALLCTCCHAGLVKNGREIFSRMTEE 442

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           + I  RT+HY  MV LLG AG L EAY++I ++    D  +WGALL  C  HGN ELAEI
Sbjct: 443 FHIQARTDHYVHMVKLLGMAGELQEAYDLILSLQQPVDSGIWGALLSCCNFHGNPELAEI 502

Query: 540 AAKHLSELEPESAANNMLLTDLYAN 564
            A+ L E +PE +A  ++L+++YA 
Sbjct: 503 VAQQLFENKPEKSAYRVMLSNIYAG 527


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 157/507 (30%), Positives = 266/507 (52%), Gaps = 40/507 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK LHAQ+I    +        LI  Y     +  A  +F  IP  ++  W ++   +++
Sbjct: 187 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQ 246

Query: 157 RGYHQEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
            G+  EA++   EM   G+   N ++  S LKAC  L     G +IH L +K     +A 
Sbjct: 247 LGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAI 306

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
              SL DMY++CG +  A++VFD++   D  + N +++G    G A EA+++  ++ +  
Sbjct: 307 AGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSG 366

Query: 276 VKPN--------------------------VVTW---------NTLISGFSKSGDQVMVS 300
             P+                          ++ W         N+L++ ++   D     
Sbjct: 367 FIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCF 426

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            LF+  R      D VSW ++++  + +    E    FK ML     P   T+ ++L  C
Sbjct: 427 NLFEDFRNNA---DSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGC 483

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
              ++++ G ++H  ++  G+  +  +++ L+DMYAKCG + +AR +FD M  R+ V+W+
Sbjct: 484 VEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWS 543

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           ++I G A  G+ +EA+ LF +M+    + +H++F  VLTAC HVGLVE G +L+  MQ +
Sbjct: 544 TLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTE 603

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           + I P  EH +C+VDLL RAGRL EA   I  M  EPD+ VW  LL ACK  GN+ LA+ 
Sbjct: 604 HGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQK 663

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA+++ +++P ++  ++LL  ++A++G
Sbjct: 664 AAENILKIDPFNSTAHVLLCSMHASSG 690



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/537 (24%), Positives = 249/537 (46%), Gaps = 45/537 (8%)

Query: 56  INGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIR-------DRALQSGKILHAQLIVSG 108
           IN +     Y+  + +  F    +++  R+  YI         R+L  G+ +H  ++ S 
Sbjct: 38  INSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSN 97

Query: 109 LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH 168
               T +   +++ Y +C ++  AR +FD +P+ N+  + ++   Y++ G   EA+ ++ 
Sbjct: 98  CKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYL 157

Query: 169 EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228
           +M  + L  + F   S++KAC   SD+G G+++H+ V+K    +     ++LI MY +  
Sbjct: 158 KMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFN 217

Query: 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV-KPNVVTWNTLI 287
            +  A +VF  +  KD+++ +++++G+ Q G   EAL+ ++E+ +  V  PN   + + +
Sbjct: 218 QMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSL 277

Query: 288 SGFSK-----SGDQV---------------------MVSKLFQLMRAKGV-----EPDVV 316
              S       G Q+                     M ++   L  A+ V      PD  
Sbjct: 278 KACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTA 337

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
           SW  +I+GL +N   DEA   F +M S GF P + ++ S+L A      + +G +IH   
Sbjct: 338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYI 397

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLF-DKMSERNTVTWNSMIFGCANHGYCDEA 435
           I  G   DL V ++L+ MY  C  +     LF D  +  ++V+WN+++  C  H    E 
Sbjct: 398 IKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEM 457

Query: 436 IELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
           + LF  M   + + DH++   +L  C  +  ++LG ++ +    K  + P       ++D
Sbjct: 458 LRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQV-HCYSLKTGLAPEQFIKNGLID 516

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEP 549
           +  + G L +A  +  +M    D+  W  L+      G  E A I  K +    +EP
Sbjct: 517 MYAKCGSLGQARRIFDSMDNR-DVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEP 572



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 149/305 (48%), Gaps = 9/305 (2%)

Query: 72  RSFHLSPAAYSERIEIYIRDR--ALQSGKILHAQLIVSG-LARLTQIATKLITFYTECQN 128
           RS    P A S R  +  + +  AL  G  +H+ +I  G LA LT +   L+T YT C +
Sbjct: 363 RSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLT-VCNSLLTMYTFCSD 421

Query: 129 IHHARMLFDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           ++    LF++     +   W  +  A  +     E + +F  M +   + +   + ++L+
Sbjct: 422 LYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLR 481

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
            C  +S +  G ++H   LK     + F+ + LIDMY+KCGS+ +A+++FD M  +D+V+
Sbjct: 482 GCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVS 541

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            + ++ GY Q G   EAL L +E+ +  ++PN VT+  +++  S  G      KL+  M+
Sbjct: 542 WSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQ 601

Query: 308 AK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
            + G+ P     + V+  L      +EA     EM  +   P      ++L AC +  N+
Sbjct: 602 TEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLE---PDVVVWKTLLSACKTQGNV 658

Query: 367 RRGKE 371
              ++
Sbjct: 659 HLAQK 663



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 2/181 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ G  +H   + +GLA    I   LI  Y +C ++  AR +FD +   ++  W  L  
Sbjct: 488 SLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIV 547

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFG 211
            YA+ G+ +EA+ +F EM   G++ N      VL AC H+  +  G K++ ++  +H   
Sbjct: 548 GYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGIS 607

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                 S ++D+ ++ G + +A++  DEM +E D+V    ++S    +G    A    E 
Sbjct: 608 PTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAEN 667

Query: 271 I 271
           I
Sbjct: 668 I 668


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 166/529 (31%), Positives = 271/529 (51%), Gaps = 42/529 (7%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARM 134
           LS  + +  +E+ +  R+   G+  HAQ++ +        +   L+  Y +  +++ A++
Sbjct: 4   LSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKL 63

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           + +  P  ++  W AL     + G    A+  F +M    ++ N F  P VLKA   L  
Sbjct: 64  ILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRM 123

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
             TG+++H+L +K     D FV  S+ DMYSK G +  A KVFDEM  +++   NA +S 
Sbjct: 124 DTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISN 183

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------------- 283
            V  G   +++    E+     KP+ +T+                               
Sbjct: 184 SVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQN 243

Query: 284 ----NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
               N LI  + K G+      +F  M     E + VSW+S+I+  V N   ++A   F 
Sbjct: 244 VSVSNGLIDFYGKCGEVECSEMVFDRMG----ERNSVSWSSLIAAYVQNNEEEKASCLFL 299

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
               +   PT   +SS+L ACA  + +  G+ +   A+   VE ++ V SALVDMY KCG
Sbjct: 300 RARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCG 359

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVL 457
            I  A   F+ M ERN V+WN+++ G A+ G+ ++A+ L  +M     +   ++S    L
Sbjct: 360 SIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICAL 419

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           +AC   G ++ G ++F  M+E+Y + P  EHYAC+VDLLGRAG +  AY+ IK M   P 
Sbjct: 420 SACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPT 479

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + +WGALLGAC+ HG  EL ++AA+ L EL+P+ + N+++L++++A  G
Sbjct: 480 ISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATG 528


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/507 (32%), Positives = 260/507 (51%), Gaps = 41/507 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ LHA    + L     + + L+  Y     I  +  +F E+P  N   W A       
Sbjct: 115 GESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVH 174

Query: 157 RGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
            G H E +  F +M   + L  + F     LKAC  L  +  G +IH+ V+   F    +
Sbjct: 175 AGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTHVIVKGFAAILW 234

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V +SL  MY++CG ++   ++F+ M E+D+V   ++++ Y++ G   +A+N    +   +
Sbjct: 235 VANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQ 294

Query: 276 VKPNVVT---------------WNTLISG--FSKS-GDQVMVSK---------------- 301
           V PN  T               W   + G  FS   GD + VS                 
Sbjct: 295 VSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSAS 354

Query: 302 -LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            LFQ MR +    D++SW+++I G       +E F  F  M   G  PT   ++S+L   
Sbjct: 355 VLFQGMRCR----DIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVS 410

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
              A + +G+++H  A+ +G+E +  +RSAL++MY+KCG I EA  +F++    + V+  
Sbjct: 411 GIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLT 470

Query: 421 SMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +MI G A HG C+EAI+LF + ++   + D ++F +VLTAC H G ++LG + FN+MQE 
Sbjct: 471 AMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQEN 530

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y + P  EHY CMVDLL RAGRL +A +MI  M  + D  VW  LL ACK  G++E    
Sbjct: 531 YNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRR 590

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA+ + EL+P S    + L +++++ G
Sbjct: 591 AAQRILELDPTSFTTLVTLANIHSSTG 617



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 216/478 (45%), Gaps = 76/478 (15%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKAC 189
           AR +FD++P+ +I  W A+   Y      +EA+ +F  M +   G+  + +V+   LKAC
Sbjct: 47  ARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVALKAC 106

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G  S+I  GE +H+   K    +  FV S+L+DMY + G ++K+ +VF EM  ++ V   
Sbjct: 107 GQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVTWT 166

Query: 250 AMVSGYVQRGLATEALNLVEEIGT---------------------PRVKPN--------- 279
           A ++G V  GL  E L    ++                        +VK           
Sbjct: 167 AFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTHVIV 226

Query: 280 ----VVTW--NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                + W  N+L + +++ G+     +LF+ M     E DVV WTS+I+  +     ++
Sbjct: 227 KGFAAILWVANSLATMYTECGEMQDGLRLFESMS----ERDVVLWTSLITAYIRIGQEEK 282

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A +TF  M +    P   T +S   ACAS + +  G+++HG    +G+   L V ++++ 
Sbjct: 283 AVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMK 342

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLS 452
           MY+ C  +  A  LF  M  R+ ++W+++I G +   + +E  + F+ M +   +    +
Sbjct: 343 MYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFA 402

Query: 453 FTAVLTACCHVGLVELGQR-------------------LFNMMQEKYKIMPRTEHY---- 489
             ++L+    + ++E G++                   L NM  +   I+  ++ +    
Sbjct: 403 LASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKD 462

Query: 490 -------ACMVDLLGRAGRLAEAYEMIK---TMSTEPDLFVWGALLGACKNHGNIELA 537
                    M++     G+  EA ++ +    +S  PD   + ++L AC + G ++L 
Sbjct: 463 RTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLG 520



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 176/419 (42%), Gaps = 74/419 (17%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R ++ G+ +H  +IV G A +  +A  L T YTEC  +     LF+ + + ++  W +L 
Sbjct: 212 RQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLI 271

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AY R G  ++AV  F  M    +  N     S   AC  LS +  GE++H  V     G
Sbjct: 272 TAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLG 331

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V +S++ MYS C  ++ A  +F  M  +DI++ + ++ GY Q     E       +
Sbjct: 332 DSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWM 391

Query: 272 GTPRVKP-----------------------------------NVVTWNTLISGFSKSGDQ 296
                +P                                   N    + LI+ +SK G  
Sbjct: 392 RQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSI 451

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           +  SK+F+    +    D+VS T++I+G   +   +EA D F++ L   F P   T  S+
Sbjct: 452 IEASKVFE----EKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISV 507

Query: 357 LPACASAA----------------NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           L AC+ +                 NMR  KE +GC               +VD+  + G 
Sbjct: 508 LTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGC---------------MVDLLCRAGR 552

Query: 401 ISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLT 458
           +++A  + ++M  +++ V W +++  C   G  +       ++ E   LD  SFT ++T
Sbjct: 553 LNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRRAAQRILE---LDPTSFTTLVT 608


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 174/539 (32%), Positives = 283/539 (52%), Gaps = 79/539 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTE------CQNIHHARMLFDEIPKTNIHRWIAL 150
            K  HA +I++G   L  +  + I            Q +H    +   +P  +   W   
Sbjct: 39  AKQTHACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHS---ILYHLPHPDSFSWGWA 95

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              ++++G  +EA+ ++ +M  QGL  + F + S L+A    +    G  IH+   K+ F
Sbjct: 96  IRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGF 155

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
               +V ++L+D+YSK G +  A+KVFDE+ EK++V+ N+++SG+++ G   EA  + ++
Sbjct: 156 SNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQ 215

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------------- 311
           I     K +V++WN++ISG++K GD      LFQ M  K                     
Sbjct: 216 IS----KKDVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSA 271

Query: 312 --------EPDVVSWTSVISGLVHNFCND-----EAFD--------TFKEMLS------- 343
                   E + VSW ++I+G  ++ C D     + FD        TF  M+S       
Sbjct: 272 WRFFDAMPERNSVSWITMIAG--YSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQ 329

Query: 344 ---------------QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                              P   T++S++ AC+   ++R    I      +G E D  + 
Sbjct: 330 PRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLV 389

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
           +AL+D+YAKCG + +A  LF  +++++ V +++MI GC  +G   +AI+LF+ M + +  
Sbjct: 390 TALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIH 449

Query: 449 DHL-SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            +L +FT +LTAC H GLV+ G R F+ M++ + ++P T+HYA MVDLLGRAGRL +AYE
Sbjct: 450 PNLATFTGLLTACNHAGLVKEGYRFFSSMKD-HGLVPSTDHYAIMVDLLGRAGRLQDAYE 508

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +IK+M  +P   VWGALL AC  H N+EL EIAA+H   LE  + A   LL ++Y++AG
Sbjct: 509 LIKSMPMQPHSGVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAG 567


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 177/549 (32%), Positives = 284/549 (51%), Gaps = 43/549 (7%)

Query: 55  LINGIFIEAHYKMPIISRSFHLSPAAYSER--IEIYIRDRALQSGKILHAQLIVSGLARL 112
           L NG+F++A      + R+  LS  +Y+    +++      L  G+ LHA L+ SG + +
Sbjct: 242 LQNGMFLQALDLFRGMQRAV-LSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG-SEV 299

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
                 L+  YT+C  +  A  +F EI + +   W ++   Y + G + EA+    EM  
Sbjct: 300 NIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLR 359

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            G + +   I S+  A GHL  +  G+++H+  +K    +D  V ++L+DMY KC  +E 
Sbjct: 360 GGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEY 419

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP--RVKP------------ 278
           +  VFD M  KD ++   +++ Y Q     EAL +  E      +V P            
Sbjct: 420 SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSG 479

Query: 279 --------------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                               ++V  N +I  + + G+     K+F+ +  K    D+V+W
Sbjct: 480 LETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQK----DIVTW 535

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           TS+I+   ++   +EA   F EM S    P S  + SIL A    +++ +GKE+HG  I 
Sbjct: 536 TSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIR 595

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
                +  + S+LVDMY+ CG +S A  +F+ +  ++ V W +MI     HG+  +AI+L
Sbjct: 596 RNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDL 655

Query: 439 FNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F +M +     DH+SF A+L AC H  LV  G+   +MM   Y++ P  EHYAC+VDLLG
Sbjct: 656 FKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLG 715

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           R+G+  EAYE IK+M  +P   VW +LLGAC+ H N ELA +AA  L ELEP++  N +L
Sbjct: 716 RSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVL 775

Query: 558 LTDLYANAG 566
           +++++A  G
Sbjct: 776 VSNVFAEMG 784



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 144/514 (28%), Positives = 249/514 (48%), Gaps = 46/514 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHARMLFDE 138
           Y   +++    +A+  G  +HA  + +G        +ATKL+  Y +C  +  AR+LFD 
Sbjct: 61  YGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDG 120

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ---GLKQNIFVIPSVLKACGHLSDI 195
           +    +  W AL GAY   G   EA+ V+  M +    G+  +   + SVLKA G   D 
Sbjct: 121 MSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDG 180

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSG 254
             G ++H L +KH      FV ++LI MY+KCG ++ A +VF+ M + +D+ + N+M+SG
Sbjct: 181 RCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISG 240

Query: 255 YVQRGLATEALNLVE-------------EIGTPRVKPNVVTWN---TLISGFSKSGDQ-- 296
            +Q G+  +AL+L                +G  +V   +   N    L +   KSG +  
Sbjct: 241 CLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN 300

Query: 297 -------VMVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
                  VM +K  ++  A  V     E D +SW S++S  V N    EA +   EML  
Sbjct: 301 IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRG 360

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           GF P  A I S+  A      +  GKE+H  AI   ++ D  V + L+DMY KC +I  +
Sbjct: 361 GFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYS 420

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHV 463
             +FD+M  ++ ++W ++I   A      EA+E+F + + E  K+D +   ++L AC  +
Sbjct: 421 AHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGL 480

Query: 464 GLVELGQRL--FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
             + L ++L  + +      ++ +      ++D+ G  G +  + +M +T+  + D+  W
Sbjct: 481 ETILLAKQLHCYAIRNGLLDLVVKNR----IIDIYGECGEVYHSLKMFETVE-QKDIVTW 535

Query: 522 GALLGACKNHG--NIELAEIAAKHLSELEPESAA 553
            +++    N G  N  L   A    ++++P+S A
Sbjct: 536 TSMINCYANSGLLNEALVLFAEMQSTDVQPDSVA 569


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 260/507 (51%), Gaps = 41/507 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH      G  R   +A  L+  Y + ++I  A  +F  + + ++  W ++   
Sbjct: 415 LDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAG 474

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +       +A+  F  M +  +K N     + L AC     + +G++IH+ VL+   G++
Sbjct: 475 FCFNHRSFDALYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSE 533

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--- 270
            +V ++L+D+Y KCG    A   F    EKD+V+ N M+SG+V  GL   AL+L  +   
Sbjct: 534 GYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMY 593

Query: 271 ------------------------IGTPRVKPN------VVTWNTLISGFSKSGDQVMVS 300
                                   I    +  N      VV  N L+  ++KS       
Sbjct: 594 TSLGRMGACSALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAI 653

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           ++F+ M     E DVVSW+S+I+G   N  + +A   F+ ML     P S T  + L AC
Sbjct: 654 EVFKFM----AEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSAC 708

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           A+   +R GKEIH   +  G+  + +V +AL+D+Y KCG  S A   F   SE++ V+WN
Sbjct: 709 AATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWN 768

Query: 421 SMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
            M+ G   HG  D A+ LFNQM E  +  D ++F  ++ AC   G+V  G  LF+   EK
Sbjct: 769 IMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFV-LMCACSRAGMVIQGWELFHRRTEK 827

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           + I+P  +HYACMVDLL R G+L EAY +I  M  +PD  VWGALL  C+ H ++EL E+
Sbjct: 828 FSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGEL 887

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AAK + ELEP   A ++LL DLY +AG
Sbjct: 888 AAKVILELEPNDVAYHVLLCDLYTDAG 914



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 232/487 (47%), Gaps = 36/487 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +HA ++  G      +   L+T Y +C +I  AR +FD +  T+   W A+   +  
Sbjct: 216 GREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFE 275

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +  + +F  M    ++ N+  I SV  A G LS++G  +++H   +K  F  D   
Sbjct: 276 NHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAF 335

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI MY+  G +  A K+F  M  KD ++  AM+SGY + G   +AL +   +    V
Sbjct: 336 CNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNV 395

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-------------------------- 310
            P+ VT  + ++  +  G   +  KL +L + KG                          
Sbjct: 396 NPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIE 455

Query: 311 -----VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
                 E DVVSW+S+I+G   N  + +A   F+ ML     P S T  + L ACA+   
Sbjct: 456 VFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGA 514

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +R GKEIH   +  G+  + +V +AL+D+Y KCG  S A   F   SE++ V+WN M+ G
Sbjct: 515 LRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSG 574

Query: 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
              HG  D A+ LFNQM     L  +   + L AC  +G +++G +L  + Q K  I   
Sbjct: 575 FVAHGLGDIALSLFNQM-MYTSLGRMGACSALAACACLGRLDVGIKLHELAQNKGFIRYV 633

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHL 544
               A ++++  ++  + +A E+ K M+ E D+  W +++ G C NH + +        L
Sbjct: 634 VVANA-LLEMYAKSKHIDKAIEVFKFMA-EKDVVSWSSMIAGFCFNHRSFDALYYFRYML 691

Query: 545 SELEPES 551
             ++P S
Sbjct: 692 GHVKPNS 698



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 223/462 (48%), Gaps = 47/462 (10%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           ++   +++       I HA  +F ++P+ ++  W  + G Y + G+ +EA+ +++ M   
Sbjct: 132 RLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWA 191

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G++ +++  P VL+ CG + D   G ++H+ VL+  FG +  V+++L+ MY+KCG +  A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT----------- 282
           +KVFD M   D ++ NAM++G+ +       L L   +    V+PN++T           
Sbjct: 252 RKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 283 ------------------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                    N+LI  ++  G      K+F  M  K    D +SW
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK----DAMSW 367

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
           T++ISG   N   D+A + +  M      P   TI+S L ACA    +  G ++H  A  
Sbjct: 368 TAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQN 427

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG-CANHGYCDEAIE 437
            G    + V +AL++MYAK   I +A  +F  M+E++ V+W+SMI G C NH   D A+ 
Sbjct: 428 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFD-ALY 486

Query: 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDL 495
            F  M    K + ++F A L+AC   G +  G+ +   +    +    +E Y    ++DL
Sbjct: 487 YFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYV---LRCGIGSEGYVPNALLDL 543

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + G+ + A+    ++ +E D+  W  +L     HG  ++A
Sbjct: 544 YVKCGQTSYAWAQF-SVHSEKDVVSWNIMLSGFVAHGLGDIA 584



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 39/371 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+SGK +HA ++  G+     +   L+  Y +C    +A   F    + ++  W  +  
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 153 AYARRGYHQEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            +   G    A+++F++M    L +       +     G L D+G   K+H L     F 
Sbjct: 574 GFVAHGLGDIALSLFNQMMYTSLGRMGACSALAACACLGRL-DVGI--KLHELAQNKGFI 630

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V ++L++MY+K   ++KA +VF  M EKD+V+ ++M++G+     + +AL     +
Sbjct: 631 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYM 690

Query: 272 GTPRVKPNVVTWNTLIS-----GFSKSGDQVMVSKLFQLMRAKGVEP------------- 313
               VKPN VT+   +S     G  +SG ++    L   + ++G  P             
Sbjct: 691 -LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQT 749

Query: 314 -------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                        DVVSW  ++SG V +   D A   F +M+  G  P   T   ++ AC
Sbjct: 750 SYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTF-VLMCAC 808

Query: 361 ASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
           + A  + +G E+ H       +  +L   + +VD+ ++ G ++EA  L ++M  + +   
Sbjct: 809 SRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAV 868

Query: 419 WNSMIFGCANH 429
           W +++ GC  H
Sbjct: 869 WGALLNGCRIH 879



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 12/332 (3%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  LH      G  R   +A  L+  Y + ++I  A  +F  + + ++  W ++   
Sbjct: 614 LDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAG 673

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +       +A+  F  M +  +K N     + L AC     + +G++IH+ VL+   G++
Sbjct: 674 FCFNHRSFDALYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSE 732

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            +V ++L+D+Y KCG    A   F    EKD+V+ N M+SG+V  GL   AL+L  ++  
Sbjct: 733 GYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVE 792

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCND 332
               P+ VT+  L+   S++G  +   +LF     K  + P++  +  ++  L       
Sbjct: 793 MGEHPDEVTF-VLMCACSRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRVGKLT 851

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA++    M  +   P +A   ++L  C    ++  G E+    I+     D+     L 
Sbjct: 852 EAYNLINRMPIK---PDAAVWGALLNGCRIHRHVELG-ELAAKVILELEPNDVAYHVLLC 907

Query: 393 DMYAKCGFISEARTLFDKMSER-----NTVTW 419
           D+Y   G  ++   +   M E+     N  +W
Sbjct: 908 DLYTDAGKWAQVARVRKTMREKGLEQDNGCSW 939



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 13/187 (6%)

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-E 443
           L + +A++ M  + G I  A  +F KM ER+  +WN M+ G    G+ +EA++L+ +M  
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
              + D  +F  VL  C  +    +G+ +   +  ++      +    +V +  + G + 
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL-RFGFGDEVDVLNALVTMYAKCGDIV 249

Query: 504 EAYEMIKTMSTEPDLFVWGALL-GACKNH---GNIELAEIAAKHLSELEPESAANNMLLT 559
            A ++   M+   D   W A++ G  +NH     +EL       L+ LE E   N M +T
Sbjct: 250 AARKVFDGMAMT-DCISWNAMIAGHFENHECEAGLEL------FLTMLENEVQPNLMTIT 302

Query: 560 DLYANAG 566
            +   +G
Sbjct: 303 SVTVASG 309


>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 159/484 (32%), Positives = 268/484 (55%), Gaps = 13/484 (2%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITF--YTECQN-IHHARMLFDEIPK-------TNI 144
           Q+G+I  AQ     + +   +   L+T+     C N + H  +  D + K        ++
Sbjct: 261 QNGEIGQAQKYFDAMQK-DGVEPSLVTWNILISCYNQLGHCDLAIDLMRKMEWFGIAPDV 319

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
           + W ++   + ++G    A+ +  EM + G++ N   I S   AC  L  +  G +IHS+
Sbjct: 320 YTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASACAALKSLSMGLEIHSI 379

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            +K +   +  V +SLIDMY KCG ++ A+ +FD M E+D+ + N+++ GY Q G   +A
Sbjct: 380 AVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGGYFQAGFCGKA 439

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSVIS 323
             L  ++      PN++TWN +I+G+ +SG +     LF+ +   G  + +  SW S+IS
Sbjct: 440 HELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLFKSIEKDGKTKRNAASWNSLIS 499

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           G V +   D+A   F+ M      P S TI SILP CA+    ++ KEIH  A+   +  
Sbjct: 500 GFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVCANLVASKKVKEIHCFAVRRILVS 559

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +L V + L+D YAK G +  ++ +F+++S ++ V+WNSM+     HG  + A++LF QM 
Sbjct: 560 ELSVSNLLIDSYAKSGNLMYSKNIFNELSWKDAVSWNSMLSSYVLHGCSESALDLFYQMR 619

Query: 444 ERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
           ++  + +  +F ++L A  H G+V+ G+ +F+ + + Y +    EHY+ MV LLGR+G+L
Sbjct: 620 KQGLQPNRGTFASILLAYGHAGMVDEGKSVFSCITKDYLVRQGMEHYSAMVYLLGRSGKL 679

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
           AEA + I++M  EP+  VWGALL AC+ H N  +A +A K + E EP +     LL+  Y
Sbjct: 680 AEALDFIQSMPIEPNSSVWGALLTACRIHRNFGVAVLAGKRMLEFEPGNNITRHLLSQAY 739

Query: 563 ANAG 566
           +  G
Sbjct: 740 SLCG 743



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 158/519 (30%), Positives = 269/519 (51%), Gaps = 11/519 (2%)

Query: 56  INGIFIEAHYKM-PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           ING   EA   +  +  +   + P  Y   ++  I    +  GK LH+++   GL     
Sbjct: 60  INGSLSEAVTILDSLAEQGCRVKPITYMNLLQSCIDKDCIFIGKELHSRI---GLVENVN 116

Query: 115 --IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
             + TKL++ Y +C  +  AR +F+E+   N+  W A+ G  +R     E V +F+ M  
Sbjct: 117 PFVETKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMR 176

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            G+  + F++P VL+ACG   D+ TG  IHS+V++        + +S++ +Y+KCG ++ 
Sbjct: 177 DGVLPDEFLLPKVLQACGKCRDLETGRLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDC 236

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
           AKK+FD M E+D VA NAM+SG+ Q G   +A    + +    V+P++VTWN LIS +++
Sbjct: 237 AKKIFDCMDERDSVAWNAMISGFCQNGEIGQAQKYFDAMQKDGVEPSLVTWNILISCYNQ 296

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
            G   +   L + M   G+ PDV +WTS+ISG         A D  KEM   G    + T
Sbjct: 297 LGHCDLAIDLMRKMEWFGIAPDVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNIT 356

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           I+S   ACA+  ++  G EIH  A+ M +  ++ V ++L+DMY KCG +  A+ +FD MS
Sbjct: 357 IASAASACAALKSLSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMS 416

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQR 471
           ER+  +WNS+I G    G+C +A ELF +M+E     + +++  ++T     G  +    
Sbjct: 417 ERDVYSWNSIIGGYFQAGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALD 476

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS---TEPDLFVWGALLGAC 528
           LF  +++  K       +  ++    ++G+  +A ++ + M      P+     ++L  C
Sbjct: 477 LFKSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVC 536

Query: 529 KNH-GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            N   + ++ EI    +  +     + + LL D YA +G
Sbjct: 537 ANLVASKKVKEIHCFAVRRILVSELSVSNLLIDSYAKSG 575


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 244/461 (52%), Gaps = 62/461 (13%)

Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
           A+  +  M    ++ + F+IPSVLKAC  +S    G++IH   +K+   +D FVV++L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 223 MYSKCGSVEKAKKVFDEMVEKD----------------------IVAMNAMVSGYVQRGL 260
           MYS+CGS+  A+ +FD+M E+D                      IV+  AM++GY++   
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLI---------------------SGFS-------- 291
             E   L   +    V PN +T  +LI                     +GF         
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 292 ------KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
                 K G+      +F  M+ K    DV++WT++IS      C D AF  F +M   G
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNK----DVMTWTAMISAYAQANCIDYAFQLFVQMRDNG 328

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P   T+ S+L  CA    +  GK  H      GVE D+ +++AL+DMYAKCG IS A+
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQ 388

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVG 464
            LF +  +R+  TWN M+ G   HGY ++A++LF +ME    K + ++F   L AC H G
Sbjct: 389 RLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAG 448

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           LV  G+ LF  M   + ++P+ EHY CMVDLLGRAG L EAY+MI++M   P++ +WGA+
Sbjct: 449 LVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAM 508

Query: 525 LGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           L ACK H N  + E+AA+ L  LEP++    +L++++YA A
Sbjct: 509 LAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAA 549



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 137/279 (49%), Gaps = 4/279 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+Q GK LHA ++ +G      +AT L+  Y +C  I  AR +FD +   ++  W A+  
Sbjct: 247 AVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMIS 306

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           AYA+      A  +F +M   G++ N   + S+L  C     +  G+  H+ + K     
Sbjct: 307 AYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV 366

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + ++LIDMY+KCG +  A+++F E +++DI   N M++GY   G   +AL L  E+ 
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-LMRAKGVEPDVVSWTSVISGLVHNFCN 331
           T  VKPN +T+   +   S +G  V    LF+ ++   G+ P V  +  ++  L      
Sbjct: 427 TLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLL 486

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           DEA+   + M      P  A   ++L AC    N   G+
Sbjct: 487 DEAYKMIESM---PVTPNIAIWGAMLAACKIHKNSNMGE 522



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 173/396 (43%), Gaps = 71/396 (17%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H   + +GL     +   L+  Y+EC ++  AR+LFD++ + ++  W  +  AY  
Sbjct: 128 GKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYIT 187

Query: 157 --RGYHQEAVTVFHEM----------------HIQGLKQNIF----VIPSVLKACGHLSD 194
              G+ Q ++  +  M                 ++ +++N+F     + S++ +CG +  
Sbjct: 188 LFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGA 247

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G+++H+ +L++ FG    + ++L+DMY KCG +  A+ +FD M  KD++   AM+S 
Sbjct: 248 VQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISA 307

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVT------------------W------------- 283
           Y Q      A  L  ++    V+PN +T                  W             
Sbjct: 308 YAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVD 367

Query: 284 ----NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                 LI  ++K GD     +LF    ++ ++ D+ +W  +++G   +   ++A   F 
Sbjct: 368 VILKTALIDMYAKCGDISGAQRLF----SEAIDRDICTWNVMMAGYGMHGYGEKALKLFT 423

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKE-----IHGCAIVMGVEGDLHVRSALVDM 394
           EM + G  P   T    L AC+ A  +  GK      IH   +V  VE        +VD+
Sbjct: 424 EMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEH----YGCMVDL 479

Query: 395 YAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANH 429
             + G + EA  + + M    N   W +M+  C  H
Sbjct: 480 LGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIH 515


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/487 (33%), Positives = 268/487 (55%), Gaps = 36/487 (7%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +AT LI  Y E   +  AR LFDE+P  ++  W A+   YA   Y+  A   FHEM  QG
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG 106

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG-SVEKA 233
              N F + SVLK+C ++  +  G  +H +V+K       +V +++++MY+ C  ++E A
Sbjct: 107 TSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAA 166

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE--IGTPRVKPNVVTWNTLISGFS 291
             +F ++  K+ V    +++G+   G     L + ++  +    V P  +T     S   
Sbjct: 167 CLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASI 226

Query: 292 KS---GDQV---MVSKLFQ------------------LMRAKGV-----EPDVVSWTSVI 322
            S   G Q+   ++ + FQ                  L  AK       + D+++W ++I
Sbjct: 227 DSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLI 286

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           S L  +  + EA   F+   SQGF P   T +S++ ACA+ A +  G+++HG     G  
Sbjct: 287 SELERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFN 345

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQ 441
            ++ + +AL+DMYAKCG I +++ +F ++ +R N V+W SM+ G  +HGY  EA+ELF++
Sbjct: 346 KNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDK 405

Query: 442 MEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M     + D + F AVL+AC H GLVE G + FN+M+ +Y I P  + Y C+VDLLGRAG
Sbjct: 406 MVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAG 465

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHG-NIELAEIAAKHLSELEPESAANNMLLT 559
           ++ EAYE+++ M  +PD   WGA+LGACK H  N  ++ +AA+ + EL+P+     ++L+
Sbjct: 466 KIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLS 525

Query: 560 DLYANAG 566
            +YA  G
Sbjct: 526 YIYAAEG 532



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 137/272 (50%), Gaps = 6/272 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ++ +GK +HA +I  G      +   ++  Y  C  +  A+  F E+   ++  W  L  
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLIS 287

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              R     EA+ +F     QG   N +   S++ AC +++ +  G+++H  + +  F  
Sbjct: 288 ELERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNK 346

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +  + ++LIDMY+KCG++  +++VF E+V+ +++V+  +M+ GY   G   EA+ L +++
Sbjct: 347 NVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKM 406

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
            +  ++P+ + +  ++S    +G      K F +M ++ G+ PD   +  V+  L     
Sbjct: 407 VSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGK 466

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
             EA++  + M    F P  +T  +IL AC +
Sbjct: 467 IGEAYELVERM---PFKPDESTWGAILGACKA 495



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 129/273 (47%), Gaps = 24/273 (8%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALT 151
           AL  G+ LH ++   G  +  ++A  LI  Y +C NI  ++ +F EI  + N+  W ++ 
Sbjct: 328 ALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMM 387

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             Y   GY  EAV +F +M   G++ +  V  +VL AC H   +  G K  + V++  +G
Sbjct: 388 IGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFN-VMESEYG 446

Query: 212 --TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D  + + ++D+  + G + +A ++ + M  K   +    + G  +   A +   L+ 
Sbjct: 447 INPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACK---AHKHNGLIS 503

Query: 270 EIGTPRV---KPNVV-TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISG 324
            +   +V   KP +V T+  L   ++  G  V  +++ ++MR  G + +  +SW      
Sbjct: 504 RLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWI----- 558

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           LV N         F   +S   CP ++++ S+L
Sbjct: 559 LVEN-------QVFSFAVSDKMCPNASSVYSVL 584


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/531 (29%), Positives = 272/531 (51%), Gaps = 58/531 (10%)

Query: 55  LINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRAL---------------QSGKI 99
           L++G+  +    + ++S    L      +R+ +YI D  L               + GK+
Sbjct: 226 LVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKM 285

Query: 100 LHAQLIVSGLARL---TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
             A  ++S          + T L++ Y +   I  AR LFD++ + ++  W  +   Y +
Sbjct: 286 DEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQ 345

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            GY+ E++ +F +M  + +  +   + +VL AC HL D   G  +H+ ++ +    D F+
Sbjct: 346 GGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFL 405

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+D+Y+KCG +++A + F+++  K                                 
Sbjct: 406 GNALLDLYAKCGKLDEALRTFEQLPCK--------------------------------- 432

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             +  +WN+++ GF +SG        F     K  E D+VSW ++++  V +   +E+F+
Sbjct: 433 --SAASWNSMLDGFCRSGGVDKARDFFN----KIPEKDIVSWNTMVNAYVKHDLFNESFE 486

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F +M S    P   T+ S+L +CA    +  G  ++       +  D  + +AL+DMY 
Sbjct: 487 IFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYG 546

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTA 455
           KCG +  A  +F ++ E+N   W +M+   A  G   EAI+L+ +MEER  K DH++F A
Sbjct: 547 KCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIA 606

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           +L AC H GLV+ G + FN ++  Y I+P   HY CMVDLLGR G L E  + I+ M  E
Sbjct: 607 LLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIE 666

Query: 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           PD+ +W +L+ AC++H N+ELAE A K L E++P +   ++LL+++YA+AG
Sbjct: 667 PDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAG 717



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/475 (25%), Positives = 233/475 (49%), Gaps = 25/475 (5%)

Query: 61  IEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLI 120
           +E +Y M  +++   L  + +   I    ++  ++ G  +H +++  G  R   +   L+
Sbjct: 118 LECYYHM--VTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLM 175

Query: 121 TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF 180
             Y++C  +     LF+++   ++  W  +   Y  +G ++EA+ +F EM + G+  +  
Sbjct: 176 GLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEI 235

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD-- 238
            + S++  C  L D+  G+++H  ++ +       +++ L+DMYSKCG +++A  +    
Sbjct: 236 TMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRC 295

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
           +  E D+V    +VSGYV+     +A  L +++     + ++V+W T++SG+ + G    
Sbjct: 296 DESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN----ERSLVSWTTMMSGYVQGGYYCE 351

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND-----EAFDTFKEMLSQGFCPTSATI 353
             +LFQ MR + V PD V+  +V+S  VH    D      AF     ML  GF   +  +
Sbjct: 352 SLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNA--L 409

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
             +   C       R  E   C             ++++D + + G + +AR  F+K+ E
Sbjct: 410 LDLYAKCGKLDEALRTFEQLPCKSAAS-------WNSMLDGFCRSGGVDKARDFFNKIPE 462

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           ++ V+WN+M+     H   +E+ E+F +M+    K D  +  ++L++C  VG +  G  +
Sbjct: 463 KDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWV 522

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
            N+  EK +I         ++D+ G+ G +  AYE I T   E ++FVW A++ A
Sbjct: 523 -NVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYE-IFTQIIEKNVFVWTAMMAA 575



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 120/228 (52%), Gaps = 3/228 (1%)

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           EP+ + W +++   +   C  E  + +  M++QG     +T   ++ AC    +++ G E
Sbjct: 95  EPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSE 154

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +HG  +  G   +  + + L+ +Y+KCG + E   LF+KM+ R+ ++WN+MI      G 
Sbjct: 155 VHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGM 214

Query: 432 CDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             EA++LF++M     L D ++  ++++ C  +  +E+G+RL   + +  K+  R     
Sbjct: 215 YREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDN-KLWIRGSLLN 273

Query: 491 CMVDLLGRAGRLAEAYEMI-KTMSTEPDLFVWGALLGACKNHGNIELA 537
           C+VD+  + G++ EA+ ++ +   +E D+ +W  L+        I+ A
Sbjct: 274 CLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKA 321



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 25/228 (10%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + T LI  Y +C  +  A  +F +I + N+  W A+  AYA  G   EA+ ++ EM  +G
Sbjct: 537 LGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERG 596

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK--------HSFGTDAFVVSSLIDMYSK 226
           +K +     ++L AC H   +  G K  + +          H +G        ++D+  +
Sbjct: 597 VKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGC-------MVDLLGR 649

Query: 227 CGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNLVEEIGTPRVKPNVVT 282
            G +E+  K  + M +E D+   ++++     +    LA +A   + EI       +V+ 
Sbjct: 650 VGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLL 709

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV-ISGLVHNF 329
            N     ++ +G    VSK+   +   GV P    +T +  +G+VH F
Sbjct: 710 SNI----YADAGRWDDVSKVRTKLHETGV-PKQPGFTMIEQNGVVHEF 752


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/525 (32%), Positives = 260/525 (49%), Gaps = 81/525 (15%)

Query: 119 LITFYTECQNIHHARMLFDEIP-----KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           +I+ Y +      A   F E+      K N+  W AL     + GY  EA++VF +M ++
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVEK 232
           G+K N   I S + AC +LS +  G +IH   +K     +D  V +SL+D Y+KC SVE 
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 233 AKKVF-------------------------------DEM----VEKDIVAMNAMVSGYVQ 257
           A++ F                                EM    +E DI+  N +V+G+ Q
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 258 RGLATEALNLVEEIGTPRVKPNVVT----------------------------------- 282
            G    AL   + + +  + PN  T                                   
Sbjct: 477 YGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGV 536

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
            + LIS +S      +   +F  +  +    DVV W S+IS    +  +  A D  +EM 
Sbjct: 537 GSALISMYSGCDSLEVACSVFSELSTR----DVVVWNSIISACAQSGRSVNALDLLREMN 592

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
                  + T+ S LPAC+  A +R+GKEIH   I  G++    + ++L+DMY +CG I 
Sbjct: 593 LSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQ 652

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACC 461
           ++R +FD M +R+ V+WN MI     HG+  +A+ LF        K +H++FT +L+AC 
Sbjct: 653 KSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACS 712

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
           H GL+E G + F MM+ +Y + P  E YACMVDLL RAG+  E  E I+ M  EP+  VW
Sbjct: 713 HSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVW 772

Query: 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           G+LLGAC+ H N +LAE AA++L ELEP+S+ N +L+ ++Y+ AG
Sbjct: 773 GSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 817



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 228/389 (58%), Gaps = 7/389 (1%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HAQL+V+G+     + ++L+  Y +   +  AR +FD++ + N+  W A+   
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y   G ++E + +F+ M  +G++ + FV P V KAC  L +   G+ ++  +L   F  +
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 224

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           + V  S++DM+ KCG ++ A++ F+E+  KD+   N MVSGY  +G   +AL  + ++  
Sbjct: 225 SCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL 284

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA-KGVEPDVVSWTSVISGLVHNFCND 332
             VKP+ VTWN +ISG+++SG     SK F  M   K  +P+VVSWT++I+G   N  + 
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG-CAIVMGVEGDLHVRSAL 391
           EA   F++M+ +G  P S TI+S + AC + + +R G+EIHG C  V  ++ DL V ++L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDH 450
           VD YAKC  +  AR  F  + + + V+WN+M+ G A  G  +EAIEL ++M+ +  + D 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 451 LSFTAVLTACCHVG----LVELGQRLFNM 475
           +++  ++T     G     +E  QR+ +M
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSM 493



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 149/270 (55%), Gaps = 4/270 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L+ GK +H  ++ + +   T + + LI+ Y+ C ++  A  +F E+   ++  W ++ 
Sbjct: 513 RNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSII 572

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A A+ G    A+ +  EM++  ++ N   + S L AC  L+ +  G++IH  +++    
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           T  F+++SLIDMY +CGS++K++++FD M ++D+V+ N M+S Y   G   +A+NL +  
Sbjct: 633 TCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXF 692

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
            T  +KPN +T+  L+S  S SG      K F++M+ +  ++P V  +  ++  L     
Sbjct: 693 RTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            +E  +  ++M    F P +A   S+L AC
Sbjct: 753 FNETLEFIEKM---PFEPNAAVWGSLLGAC 779



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 14/220 (6%)

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +SIL  C    N+R G ++H   +V GV+    + S L+++Y + G + +AR +FDKMSE
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           RN  +W +++      G  +E I+LF  M  E  + DH  F  V  AC  +    +G+ +
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 473 FNMMQEKYKIMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           ++     Y +    E  +C    ++D+  + GR+  A    + +  + D+F+W  ++   
Sbjct: 213 YD-----YMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSGY 266

Query: 529 KNHGNIE--LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            + G  +  L  I+   LS ++P+    N +++  YA +G
Sbjct: 267 TSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-YAQSG 305


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/529 (31%), Positives = 271/529 (51%), Gaps = 42/529 (7%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARM 134
           LS  + +  +E+ +  R+   G+  HAQ++ +        +   L+  Y +  +++ A++
Sbjct: 4   LSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKL 63

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           + +  P  ++  W AL     + G    A+  F +M    ++ N F  P VLKA   L  
Sbjct: 64  ILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRM 123

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
             TG+++H+L +K     D FV  S+ DMYSK G +  A KVFDEM  +++   NA +S 
Sbjct: 124 DTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISN 183

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTW------------------------------- 283
            V  G   +++    E+     KP+ +T+                               
Sbjct: 184 SVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQN 243

Query: 284 ----NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
               N LI  + K G+      +F  M     E + VSW+S+I+  V N   ++A   F 
Sbjct: 244 VSVSNGLIDFYGKCGEVECSEMVFDRMG----ERNSVSWSSLIAAYVQNNEEEKASCLFL 299

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
               +   PT   +SS+L ACA  + +  G+ +   A+   VE ++ V SALVDMY KCG
Sbjct: 300 RARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCG 359

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVL 457
            I  A   F+ M ERN V+WN+++ G A+ G+ ++A+ L  +M     +   ++S    L
Sbjct: 360 SIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICAL 419

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           +AC   G ++ G ++F  M+E+Y + P  EHYAC+VDLLGRAG +  AY+ IK M   P 
Sbjct: 420 SACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPT 479

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + +WGALLGAC+ HG  EL ++AA+ L EL+P+ + N+++L++++A  G
Sbjct: 480 ISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATG 528


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/506 (33%), Positives = 268/506 (52%), Gaps = 36/506 (7%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           I+ Y+R+R L   + L  ++    +     I    ++ Y +   +  AR +FD +P+ N 
Sbjct: 128 IKGYVRNRNLGKARELFERMPERDVCSWNTI----LSGYAQNGCVDDARRVFDRMPEKND 183

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGL------------KQNI-----FVIPSVLK 187
             W AL  AY +    +EA  +F       L            K+ I     F     ++
Sbjct: 184 VSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVR 243

Query: 188 ACGHLSDIGTGEKIHSLV------LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
                + I TG   +  +         S   D F  ++++  Y +   VE+A+++FD M 
Sbjct: 244 DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP 303

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           E++ V+ NAM++GYVQ     E + + +E+       NV TWNT+I+G+++ G       
Sbjct: 304 ERNEVSWNAMLAGYVQ----GERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKN 359

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF  M  +    D VSW ++I+G   +  + EA   F  M  +G     ++ SS L  CA
Sbjct: 360 LFDKMPKR----DPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCA 415

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
               +  GK++HG  +  G E    V +AL+ MY KCG I EA  LF +M+ ++ V+WN+
Sbjct: 416 DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNT 475

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI G + HG+ +EA+  F  M+ E  K D  +  AVL+AC H GLV+ G++ F+ M + Y
Sbjct: 476 MIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDY 535

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            + P ++HYACMVDLLGRAG L EA+ ++K M  EPD  +WG LLGA + HGN ELAE A
Sbjct: 536 GVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETA 595

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A  +  +EPE++   +LL++LYA++G
Sbjct: 596 ADKIFAMEPENSGMYVLLSNLYASSG 621



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 204/469 (43%), Gaps = 84/469 (17%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G+   A  +   + R + ++   +I+ Y        ARMLFDE+P+ ++  W  +  
Sbjct: 70  MRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIK 129

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y R     +A  +F  M            P                             
Sbjct: 130 GYVRNRNLGKARELFERM------------PE---------------------------R 150

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    ++++  Y++ G V+ A++VFD M EK+ V+ NA++S YVQ     EA  L     
Sbjct: 151 DVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF---- 206

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
             R    +V+WN L+ GF K    V   + F  M+ +    DVVSW ++I+G   N   D
Sbjct: 207 GSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVR----DVVSWNTIITGYAQNGEID 262

Query: 333 EAFDTFKEMLSQGFCPTSATISSIL------PACASAANMRRGKEIHGCAIVMG-VEGD- 384
           EA   F E         +A +S  +       A      M    E+   A++ G V+G+ 
Sbjct: 263 EARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGER 322

Query: 385 ---------------LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
                          +   + ++  YA+CG ISEA+ LFDKM +R+ V+W +MI G +  
Sbjct: 323 VEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQS 382

Query: 430 GYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G+  EA+ LF  ME E  +L+  SF++ L+ C  V  +ELG++L        +++     
Sbjct: 383 GHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHG------RLVKGGYE 436

Query: 489 YACMVD-----LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             C V      +  + G + EA ++ K M+ + D+  W  ++     HG
Sbjct: 437 TGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHG 484



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 164/357 (45%), Gaps = 29/357 (8%)

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +K  +  L  S  +D    +  I  Y + G   +A +VF  M     V+ NAM+SGY++ 
Sbjct: 44  QKSQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRN 103

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
           G    A  L +E+     + ++V+WN +I G+ ++ +     +LF+ M     E DV SW
Sbjct: 104 GEFELARMLFDEM----PERDLVSWNVMIKGYVRNRNLGKARELFERM----PERDVCSW 155

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
            +++SG   N C D+A   F  M  +     +A +S+ +          +  ++    ++
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYV----------QNSKLEEACVL 205

Query: 379 MGVEGDLHVRS--ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
            G   +  + S   L+  + K   I EAR  FD M  R+ V+WN++I G A +G  DEA 
Sbjct: 206 FGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEAR 265

Query: 437 ELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           +LF   +E    D  ++TA+++      +VE  + LF+ M E+ ++      +  M+   
Sbjct: 266 QLF---DESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEV-----SWNAMLAGY 317

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
            +  R+  A E+   M    ++  W  ++      G I  A+     + + +P S A
Sbjct: 318 VQGERVEMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWA 373



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 7/252 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK LH +L+  G      +   L+  Y +C +I  A  LF E+   +I  W  +  
Sbjct: 419 ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIA 478

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            Y+R G+ +EA+  F  M  +GLK +   + +VL AC H   +  G +  H++   +   
Sbjct: 479 GYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVR 538

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++   + ++D+  + G +E+A  +   M  E D      ++      G    A    ++
Sbjct: 539 PNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADK 598

Query: 271 IGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEP-DVVSWTSVISGLVHN 328
           I    ++P       L+S  ++ SG    V KL   MR KGV+     SW   I    H 
Sbjct: 599 IFA--MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE-IQNKTHT 655

Query: 329 FCNDEAFDTFKE 340
           F   + F   K+
Sbjct: 656 FSVGDEFHPEKD 667



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 19/248 (7%)

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           SKS  Q  + K       K  + D+  W   IS  +      EA   FK M        +
Sbjct: 35  SKSSTQTQIQKSQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYN 94

Query: 351 ATISSILPACASAANMRRGK-EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           A IS  L         R G+ E+         E DL   + ++  Y +   + +AR LF+
Sbjct: 95  AMISGYL---------RNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFE 145

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           +M ER+  +WN+++ G A +G  D+A  +F++M E+   + +S+ A+L+A      +E  
Sbjct: 146 RMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK---NDVSWNALLSAYVQNSKLEEA 202

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
             LF   +E + ++     + C++    +  ++ EA +   +M    D+  W  ++    
Sbjct: 203 CVLFG-SRENWALVS----WNCLLGGFVKKKKIVEARQFFDSMKVR-DVVSWNTIITGYA 256

Query: 530 NHGNIELA 537
            +G I+ A
Sbjct: 257 QNGEIDEA 264


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/504 (30%), Positives = 267/504 (52%), Gaps = 31/504 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G+ +HA ++ S       ++  LI  Y  C  +  A  +F  +   +   W  L   
Sbjct: 267 IKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSG 326

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             +   + +A+  F +M   G K +   + +++ A G  +++  G ++H+  +KH   ++
Sbjct: 327 MVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSN 386

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + +SLIDMY KC  V+     F+ M EKD+++   +++GY Q     +ALNL+ ++  
Sbjct: 387 MHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQL 446

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV---------------------- 311
            ++  + +   +++   S    + ++ ++   +   G+                      
Sbjct: 447 EKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYA 506

Query: 312 --------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                     D+VSWTS+I+  VHN    EA + F  ++     P   T+ S+L A A+ 
Sbjct: 507 RHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAAL 566

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           +++++GKEIHG  I  G   +  + ++LVDMYA+CG +  AR +F+ + +R+ + W SMI
Sbjct: 567 SSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMI 626

Query: 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
                HG   +AI+LF++M +   L DH++F A+L AC H GLV  G++ F +M+ +YK+
Sbjct: 627 NANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKL 686

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P  EHYAC+VDLL R+  L EAY  ++ M  EP   VW ALLGAC+ H N +L E+AAK
Sbjct: 687 EPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAK 746

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L +L  E++ N +L+++ +A  G
Sbjct: 747 KLLQLNTENSGNYVLVSNTFAADG 770



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 218/433 (50%), Gaps = 45/433 (10%)

Query: 67  MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLI-VSGLARLTQIATKLITFYTE 125
           +P  +R F L   AYS+ +E+    +AL  G+ LHA  +          + TK +  Y +
Sbjct: 37  LPTTTR-FPLQ-QAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGK 94

Query: 126 CQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           C + + A  +FD++ +  I  W A+ GA    G + EA+ ++ EM + G+  + F  P V
Sbjct: 95  CGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCV 154

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE--MVEK 243
           LKACG   +   G +IH + +K  +G   FV ++LI MY+KCG +  A+ +FD   M + 
Sbjct: 155 LKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKD 214

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW-------------------- 283
           D V+ N+++S +V  G + EAL+L   +    V+ N  T+                    
Sbjct: 215 DPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIH 274

Query: 284 ---------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                          N LI+ ++  G      ++F+ M  K    D VSW +++SG+V N
Sbjct: 275 AVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK----DCVSWNTLLSGMVQN 330

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               +A + F++M   G  P   ++ +++ A   +AN+  G E+H  AI  G++ ++H+ 
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIG 390

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKK 447
           ++L+DMY KC  +    + F+ M E++ ++W ++I G A +    +A+ L  +++ E+  
Sbjct: 391 NSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMD 450

Query: 448 LDHLSFTAVLTAC 460
           +D +   ++L AC
Sbjct: 451 VDPMMIGSILLAC 463



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 167/384 (43%), Gaps = 48/384 (12%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   L +G  +HA  I  G+     I   LI  Y +C  + +    F+ +P+ ++  W  
Sbjct: 364 RSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTT 423

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           +   YA+   H +A+ +  ++ ++ +  +  +I S+L AC  L      ++IH  VLK  
Sbjct: 424 IIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGG 483

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
              D  + ++++++Y +   V+ A+ VF+ +  KDIV+  +M++  V  GLA EAL L  
Sbjct: 484 LA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFN 542

Query: 270 EIGTPRVKPNVVTW-----------------------------------NTLISGFSKSG 294
            +    ++P+++T                                    N+L+  +++ G
Sbjct: 543 SLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCG 602

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                  +F  ++ +    D++ WTS+I+    + C  +A D F +M  +   P   T  
Sbjct: 603 TMENARNIFNYVKQR----DLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFL 658

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHV----RSALVDMYAKCGFISEARTLFDK 410
           ++L AC+ +  +  GK+      +M  E  L       + LVD+ A+   + EA      
Sbjct: 659 ALLYACSHSGLVVEGKQHFE---IMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRN 715

Query: 411 MS-ERNTVTWNSMIFGCANHGYCD 433
           M  E +   W +++  C  H   D
Sbjct: 716 MPIEPSAEVWCALLGACRIHSNND 739



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 21/247 (8%)

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
           + K G      K+F  M     E  + +W ++I   V      EA + +KEM   G    
Sbjct: 92  YGKCGSFYDAVKVFDKMS----ERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLD 147

Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
           + T   +L AC +    R G EIHG A+  G  G + V +AL+ MYAKCG +  AR LFD
Sbjct: 148 AFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFD 207

Query: 410 K--MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLV 466
              M + + V+WNS+I      G   EA+ LF +M+E   + +  +F + L AC     +
Sbjct: 208 SGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFI 267

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYA------CMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
           ++G+ +       + ++ ++ H+        ++ +    G++ +A  + K+M  + D   
Sbjct: 268 KIGRGI-------HAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK-DCVS 319

Query: 521 WGALLGA 527
           W  LL  
Sbjct: 320 WNTLLSG 326


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 174/515 (33%), Positives = 261/515 (50%), Gaps = 73/515 (14%)

Query: 119 LITFYTECQNIHHARMLFDEI-----PKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           L++ Y     +  A+MLF  +     P   +  W  +     + G   EA+ V ++M  +
Sbjct: 206 LLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVAR 265

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEK 232
           G++ +     S L AC  L  +  G ++H+ VLK S    ++FV S+L+DMY+    V  
Sbjct: 266 GVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGV 325

Query: 233 AKKVFDEMV---EKDIVAMNAMVSGYVQRGLATEALNLV-----------EEIGTPRVKP 278
           A++VFD MV    + +   NAMV GY Q G+  EAL L             E     V P
Sbjct: 326 ARRVFD-MVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLP 384

Query: 279 -------------------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                                    N    N L+  +++ GD      +F       +EP
Sbjct: 385 ACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIF-----AAIEP 439

Query: 314 -DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG------------------FCPTSATIS 354
            DVVSW ++I+G V      +AF   +EM  QG                    P + T+ 
Sbjct: 440 RDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLM 499

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           ++LP CA  A   +GKEIHG A+   ++ D+ V SALVDMYAKCG ++ +R +FD++ +R
Sbjct: 500 TLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKR 559

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQ--MEERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           N +TWN +I     HG  DEAI LF++  M    K + ++F A L AC H G+V+ G  L
Sbjct: 560 NVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMEL 619

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-EPDLFVWGALLGACKNH 531
           F+ M+  + + P  + +AC VD+LGRAGRL EAY +I +M   E  +  W + LGAC+ H
Sbjct: 620 FHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLH 679

Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            N+ L EIAA+ L +LEP+ A++ +LL ++Y+ AG
Sbjct: 680 RNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAG 714



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 181/377 (48%), Gaps = 43/377 (11%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           +A  L+T Y  C ++  A  LF+ +P  +   + +L  A         A+    +M ++G
Sbjct: 98  VANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEG 157

Query: 175 LKQNIFVIPSVLKACGHLS-DIGTGEKIHSLVLKHSF--GTDAFVVSSLIDMYSKCGSVE 231
              + F + SVL AC HL+ D+  G + H+  LK+ F  G + F  ++L+ MY++ G V+
Sbjct: 158 HPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVD 217

Query: 232 KAKKVFDEMVEKD-----IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
            A+ +F  +   D     +V  N MVS  VQ G   EA+ ++ ++    V+P+ +T+ + 
Sbjct: 218 DAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASA 277

Query: 287 ISGFSK--------------------SGDQVMVSKLFQLMRAK---GVEPDVVS------ 317
           +   S+                    + +  + S L  +  +    GV   V        
Sbjct: 278 LPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGH 337

Query: 318 -----WTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKE 371
                W +++ G      ++EA + F  M ++ G  P+  TI+ +LPACA +      + 
Sbjct: 338 RQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEA 397

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +HG  +  G+  +  V++AL+D+YA+ G +  AR +F  +  R+ V+WN++I GC   G+
Sbjct: 398 VHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGH 457

Query: 432 CDEAIELFNQMEERKKL 448
             +A +L  +M+++ + 
Sbjct: 458 IHDAFQLVREMQQQGRF 474



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 128/254 (50%), Gaps = 18/254 (7%)

Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
           N L++ +++ GD      LF  M ++    D V++ S+I+ L        A D  ++ML 
Sbjct: 100 NALLTAYARCGDLTAALALFNAMPSR----DAVTFNSLIAALCLFRRWLPALDALRDMLL 155

Query: 344 QGFCPTSATISSILPACAS-AANMRRGKEIHGCAIVMG-VEGDLHVR-SALVDMYAKCGF 400
           +G   +S T+ S+L AC+  A ++R G+E H  A+  G ++GD     +AL+ MYA+ G 
Sbjct: 156 EGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGL 215

Query: 401 ISEARTLFDKMSERNT-----VTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           + +A+ LF  +   ++     VTWN+M+      G C EAIE+   M  R  + D ++F 
Sbjct: 216 VDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFA 275

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG---RAGRLAEAYEMIKT 511
           + L AC  + ++ LG+ +   + +   +   +   + +VD+     R G     ++M+  
Sbjct: 276 SALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPG 335

Query: 512 MSTEPDLFVWGALL 525
              +  L +W A++
Sbjct: 336 GHRQ--LGLWNAMV 347



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 127/302 (42%), Gaps = 31/302 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A   GK +H   +   L     + + L+  Y +C  +  +R +FD +PK N+  W  L  
Sbjct: 510 APAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIM 569

Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSF 210
           AY   G   EA+ +F  M +    K N     + L AC H   +  G E  HS+   H  
Sbjct: 570 AYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGV 629

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAMNAMVSG-YVQRGLATEALNL 267
                + +  +D+  + G +++A  +   M   E+ + A ++ +    + R +       
Sbjct: 630 QPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVP------ 683

Query: 268 VEEIGTPR---VKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSV 321
           + EI   R   ++P+  +   L+   +S +G     S++   MR +GV  EP   SW   
Sbjct: 684 LGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPG-CSWIE- 741

Query: 322 ISGLVHNFCNDEA-----------FDTFKE-MLSQGFCPTSATISSILPACASAANMRRG 369
           + G++H F   E+            D   E M +QG+ P ++++   +     AA +R  
Sbjct: 742 LDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYH 801

Query: 370 KE 371
            E
Sbjct: 802 SE 803



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 108/264 (40%), Gaps = 59/264 (22%)

Query: 355 SILPACASAANMRR---GKEIHGCAIVMGVEGDLH-----VRSALVDMYAKCGFISEART 406
           ++ PA  SAA +R     + IHG A+   +   LH     V +AL+  YA+CG ++ A  
Sbjct: 61  ALPPAAKSAAALRSLIAVRSIHGAALRRDL---LHGFTPAVANALLTAYARCGDLTAALA 117

Query: 407 LFDKMSERNTVTWNSMIFG-CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH--- 462
           LF+ M  R+ VT+NS+I   C    +      L + + E   L   +  +VL AC H   
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 463 -----------------------------------VGLVELGQRLFNMMQEKYKIMPRTE 487
                                              +GLV+  Q LF  +           
Sbjct: 178 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIELA-EIAAKH 543
            +  MV LL ++GR  EA E+I  M      PD   + + L AC     + L  E+ A  
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYV 297

Query: 544 LSELEPESAANNML---LTDLYAN 564
           L   + + AAN+ +   L D+YA+
Sbjct: 298 LK--DSDLAANSFVASALVDMYAS 319


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 176/563 (31%), Positives = 281/563 (49%), Gaps = 94/563 (16%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH---RWIALTGA 153
           G+ LH  +  +G      +   L+  Y+ C ++  A ++FDEI +  I     W ++  A
Sbjct: 168 GRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAA 227

Query: 154 YARRGYHQEAVTVFHEMHI------QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
           + +    + A+ +F EM +         + +I  I ++L AC  L  +   ++IHS  ++
Sbjct: 228 HVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIR 287

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ---------- 257
           +    DAFV ++LID Y+KCGS+  A KVF+ M  KD+V+ NAMV+GY Q          
Sbjct: 288 NGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFEL 347

Query: 258 -------------------------RGLATEALNLVEEIGTPRVKPNVVTWNTLIS---- 288
                                    RG + EAL+  +++     +PN VT  +L+S    
Sbjct: 348 FENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACAS 407

Query: 289 -GFSKSGDQV---------------------------------MVSKLFQLMRAKGV--- 311
            G    G ++                                 M SK      A+ +   
Sbjct: 408 LGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDS 467

Query: 312 ----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC--PTSATISSILPACASAAN 365
               E +VV+WT +I G      +++A   F EM+S+ +   P + TIS IL ACA  A 
Sbjct: 468 IPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAA 527

Query: 366 MRRGKEIHGCAIVM-GVEGDLH-VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           +R GK+IH         E  ++ V + L+DMY+KCG +  AR +FD M +RN V+W SM+
Sbjct: 528 LRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMM 587

Query: 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G   HG   EA+++F++M++   + D +SF  +L AC H G+V+ G   F++M+  Y +
Sbjct: 588 SGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDV 647

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           +   EHYAC++DLL R GRL +A++ I+ M  EP   +W ALL AC+ H N+ELAE A  
Sbjct: 648 VASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALN 707

Query: 543 HLSELEPESAANNMLLTDLYANA 565
            L  ++ E+  +  L++++YANA
Sbjct: 708 KLVNMKAENDGSYTLISNIYANA 730



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 226/512 (44%), Gaps = 94/512 (18%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            + T ++  Y  C     A  + + +  +    W  L   + + G+   A+ V   M   
Sbjct: 84  SLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRA 143

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G K + F +P  LKACG L     G  +H L+  + F ++ FV ++L+ MYS+CGS+E A
Sbjct: 144 GTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 234 KKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNLVEEI------------------- 271
             VFDE+  K   D+++ N++V+ +V+      AL L  E+                   
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 272 ----------GTPRVK------------PNVVTWNTLISGFSKSGDQVMVSKLFQL---- 305
                       P++K             +    N LI  ++K G      K+F +    
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 306 ---------------------------MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
                                      MR + +  DV++W++VI+G     C+ EA D F
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI------------VMGVEGDLH 386
           ++M+  G  P S TI S+L ACAS   + +G EIH  ++              G   DL 
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 387 VRSALVDMYAKCGFISEARTLFDKMS--ERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           V +AL+DMY+KC     AR++FD +   ERN VTW  MI G A +G  ++A+++F++M  
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 445 RK---KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAG 500
           +      +  + + +L AC H+  + +G+++   +   ++  P     A C++D+  + G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCG 563

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            +  A  +  +M    ++  W +++     HG
Sbjct: 564 DVDTARNVFDSMPKRNEV-SWTSMMSGYGMHG 594



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 138/317 (43%), Gaps = 49/317 (15%)

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           HS V   S GT   VV+S    Y  CG+ + A  V + +     V  N +V  +++ G  
Sbjct: 77  HSYVSPKSLGTG--VVAS----YLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHL 130

Query: 262 TEALNLVEEIGTPRVKP-----------------------------------NVVTWNTL 286
             A+ +   +     KP                                   NV   N L
Sbjct: 131 DRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNAL 190

Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML---- 342
           ++ +S+ G     S +F  +  KG++ DV+SW S+++  V       A + F EM     
Sbjct: 191 VAMYSRCGSLEDASLVFDEITRKGID-DVISWNSIVAAHVKGSNPRTALELFSEMSMIVH 249

Query: 343 SQGFCPTSATIS--SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
            +     S  IS  +ILPACAS   + + KEIH  AI  G   D  V +AL+D YAKCG 
Sbjct: 250 EKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGS 309

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTA 459
           +++A  +F+ M  ++ V+WN+M+ G    G    A ELF  M +E   LD ++++AV+  
Sbjct: 310 MNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAG 369

Query: 460 CCHVGLVELGQRLFNMM 476
               G  +     F  M
Sbjct: 370 YAQRGCSQEALDAFQQM 386



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 24/290 (8%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDR--ALQSGKILHAQLIV--SGLARLTQIATKLITFYT 124
           +IS+ + ++P AY+    +       AL+ GK +HA +         +  +A  LI  Y+
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYS 560

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
           +C ++  AR +FD +PK N   W ++   Y   G  +EA+ +F +M   G   +      
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 620

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS------LIDMYSKCGSVEKAKKVFD 238
           +L AC H   +  G     ++ +     D  VV+S      +ID+ ++CG ++KA K   
Sbjct: 621 LLYACSHSGMVDQGLNYFDIMRR-----DYDVVASAEHYACVIDLLARCGRLDKAWKTIQ 675

Query: 239 EM-VEKDIVAMNAMVSG---YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           EM +E   V   A++S    +    LA  ALN +  +       N  ++  + + ++ + 
Sbjct: 676 EMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKA----ENDGSYTLISNIYANAR 731

Query: 295 DQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCNDEAFDTFKEMLS 343
               V+++ QLM+  G++     SW     G    F  D +     E+ S
Sbjct: 732 RWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYS 781



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 126/305 (41%), Gaps = 65/305 (21%)

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPN-VVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
            +V+ Y+  G   +AL+++E     RV P+  V WN L+    K G          L RA
Sbjct: 88  GVVASYLACGATKDALSVLE-----RVTPSPAVWWNLLVREHIKEG---------HLDRA 133

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
            GV                  C          ML  G  P   T+   L AC    +   
Sbjct: 134 IGVS-----------------C---------RMLRAGTKPDHFTLPYALKACGELPSYCC 167

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER---NTVTWNSMIFG 425
           G+ +HG     G E ++ V +ALV MY++CG + +A  +FD+++ +   + ++WNS++  
Sbjct: 168 GRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAA 227

Query: 426 CANHGYCDEAIELFNQME-------ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
                    A+ELF++M          ++ D +S   +L AC    L  L Q     ++E
Sbjct: 228 HVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPAC--ASLKALPQ-----IKE 280

Query: 479 KYKIMPRTEHYA------CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            +    R   +A       ++D   + G + +A ++   M  + D+  W A++      G
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK-DVVSWNAMVTGYTQSG 339

Query: 533 NIELA 537
           N   A
Sbjct: 340 NFGAA 344


>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
 gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
 gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
 gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 511

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 250/469 (53%), Gaps = 46/469 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA  + +G+     +  +L+       N+ +AR LFD    +    +  L  AY   
Sbjct: 5   KQLHAHCLRTGVDETKDLLQRLLLI----PNLVYARKLFDHHQNSCTFLYNKLIQAYYVH 60

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
               E++ +++ +   GL+ +      +  A    S       +HS   +  F +D+F  
Sbjct: 61  HQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCC 120

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++LI  Y+K G++  A++VFDEM ++D                                 
Sbjct: 121 TTLITAYAKLGALCCARRVFDEMSKRD--------------------------------- 147

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             V  WN +I+G+ + GD     +LF  M  K    +V SWT+VISG   N    EA   
Sbjct: 148 --VPVWNAMITGYQRRGDMKAAMELFDSMPRK----NVTSWTTVISGFSQNGNYSEALKM 201

Query: 338 FKEM-LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
           F  M   +   P   T+ S+LPACA+   +  G+ + G A   G   +++V +A ++MY+
Sbjct: 202 FLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYS 261

Query: 397 KCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           KCG I  A+ LF+++ ++RN  +WNSMI   A HG  DEA+ LF QM  E +K D ++F 
Sbjct: 262 KCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFV 321

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L AC H G+V  GQ LF  M+E +KI P+ EHY CM+DLLGR G+L EAY++IKTM  
Sbjct: 322 GLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPM 381

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           +PD  VWG LLGAC  HGN+E+AEIA++ L +LEP +  N ++++++YA
Sbjct: 382 KPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYA 430



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 40/218 (18%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           L+ G+ L      +G      +    I  Y++C  I  A+ LF+E+  + N+  W ++ G
Sbjct: 231 LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIG 290

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
           + A  G H EA+T+F +M  +G K +      +L AC H   +  G+++  S+   H   
Sbjct: 291 SLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKIS 350

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
                   +ID+  + G +++A  +                                  I
Sbjct: 351 PKLEHYGCMIDLLGRVGKLQEAYDL----------------------------------I 376

Query: 272 GTPRVKPNVVTWNTLISGFSKSGD----QVMVSKLFQL 305
            T  +KP+ V W TL+   S  G+    ++    LF+L
Sbjct: 377 KTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKL 414


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 246/451 (54%), Gaps = 41/451 (9%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T L+  Y E  ++  AR + D +P+ N   W  L   + ++G   EA+ ++ +M  +G +
Sbjct: 322 TALLDVYAELGDLEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCR 381

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            NI    SVL AC  L D+  G +IH+  LK  F +  FV SSLIDMY KC     A+++
Sbjct: 382 PNISCFSSVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRI 441

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F+ + EK                                   N V WN+LISG+S +G  
Sbjct: 442 FNSLPEK-----------------------------------NTVCWNSLISGYSWNGKM 466

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           V   +LF+ M A+    +  SW ++ISG   N    +A + F  ML+ G  P   T+SS+
Sbjct: 467 VEAEELFKKMPAR----NAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITLSSV 522

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L ACA+  ++  GK +H   + +G+E ++ + +AL DMYAK G +  +R +F +M E+N 
Sbjct: 523 LLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMPEKNN 582

Query: 417 VTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           +TW +M+ G A +G+ +E+I LF N +  R   +  +F A+L AC H GLVE     F  
Sbjct: 583 ITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQAIHYFET 642

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           MQ  + I P+ +HY CMVD+L RAGRL EA E++  + ++ D   W +LL AC  + N E
Sbjct: 643 MQ-AHGIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLSACNTYRNKE 701

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + E AAK L ELE ++ A  +LL+++YA+ G
Sbjct: 702 IGERAAKKLHELEKDNTAGYVLLSNMYASCG 732



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/476 (24%), Positives = 213/476 (44%), Gaps = 75/476 (15%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +++G I  A+ +  G+   + ++ T ++    +  ++  A  L++  P  ++  + A+  
Sbjct: 165 VKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIA 224

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FG 211
            + R   H++A  VF +M    ++ N+  +  V+KAC    +      +  L +K + F 
Sbjct: 225 GFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAIKWNLFE 284

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
               V +SLI +Y + G    A +VFD+M  +D+V+  A++  Y + G    A  +++ +
Sbjct: 285 KSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAM 344

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + N V+W+TLI+   + GD     KL+  M A+G  P++                
Sbjct: 345 P----ERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNI---------------- 384

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
                              +  SS+L ACA+  ++R G  IH  A+ MG    L V S+L
Sbjct: 385 -------------------SCFSSVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSL 425

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--------- 442
           +DMY KC   ++A+ +F+ + E+NTV WNS+I G + +G   EA ELF +M         
Sbjct: 426 IDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWN 485

Query: 443 -------EERKKLDHLSF----------------TAVLTACCHVGLVELGQRLFNMMQEK 479
                  E R+  D L++                ++VL AC ++  +E+G ++ +    K
Sbjct: 486 TMISGYAENRRFGDALNYFCAMLASGQIPGEITLSSVLLACANLCSLEMG-KMVHAEIVK 544

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             I         + D+  ++G L  +  M   M  E +   W A++     +G  E
Sbjct: 545 LGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMP-EKNNITWTAMVQGLAENGFAE 599



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 156/345 (45%), Gaps = 41/345 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G  +HA  +  G +    +++ LI  Y +C+    A+ +F+ +P+ N   W +L   
Sbjct: 400 LRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISG 459

Query: 154 YARRGYHQEAVTVFHEMH----------IQGLKQNI---------------------FVI 182
           Y+  G   EA  +F +M           I G  +N                        +
Sbjct: 460 YSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITL 519

Query: 183 PSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE 242
            SVL AC +L  +  G+ +H+ ++K     + F+ ++L DMY+K G ++ ++++F +M E
Sbjct: 520 SSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMPE 579

Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302
           K+ +   AMV G  + G A E++ L E +   R+ PN  T+  ++   S  G        
Sbjct: 580 KNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQAIHY 639

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ M+A G+ P    +T ++  L       EA +   ++ S+     +++ SS+L AC  
Sbjct: 640 FETMQAHGIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSK---LDTSSWSSLLSAC-- 694

Query: 363 AANMRRGKEI--HGCAIVMGVEGDLHVRSALV-DMYAKCGFISEA 404
             N  R KEI       +  +E D      L+ +MYA CG   +A
Sbjct: 695 --NTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDA 737



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/163 (19%), Positives = 78/163 (47%), Gaps = 1/163 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ GK++HA+++  G+     + T L   Y +  ++  +R +F ++P+ N   W A+  
Sbjct: 531 SLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMPEKNNITWTAMVQ 590

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G+ +E++ +F  M    +  N     ++L AC H   +         +  H    
Sbjct: 591 GLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPP 650

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSG 254
                + ++D+ ++ G + +A+++  ++  K D  + ++++S 
Sbjct: 651 KDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLSA 693


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 243/482 (50%), Gaps = 52/482 (10%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYT-ECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           K L A LI  G A+    A KL+ F T    N+ +AR +FD +   N++ + A+  AYA 
Sbjct: 72  KQLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYARFIFDHVESPNVYLYTAMITAYAS 131

Query: 157 RGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
              H  A+ ++  M   +    N F+ P VLK+C  +   G+   +H  VL+  F     
Sbjct: 132 HSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGFEQYPV 191

Query: 216 VVSSLIDMYSKCGS-VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           V ++L+D Y +  S VE A+ +FDEM E+                               
Sbjct: 192 VQTALLDAYLRFWSDVESARLLFDEMTER------------------------------- 220

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
               NVV+W  +ISG+++ G       LF+ M     E DV SW ++I+G   N    EA
Sbjct: 221 ----NVVSWTAMISGYTRLGQIGNAVLLFEEMP----ERDVPSWNALIAGYTQNGLFMEA 272

Query: 335 FDTFKEMLS-------QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
              F+ M++       QG  P   T    L AC     +R GK IHG     G+  D  V
Sbjct: 273 LSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFV 332

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM---EE 444
            +ALVDMY KCG + EAR +FD+  ER+  +WNSMI   A HG    AI +F +M     
Sbjct: 333 SNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGS 392

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             K D ++F  +L AC H GLVE G   F +M + Y I P+ EHY C+VDLLGRAG+  E
Sbjct: 393 GVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEE 452

Query: 505 AYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           A E+++ M  EPD  +WG+LL  CK HG+ +LAE + K L +++P +    ++L ++Y  
Sbjct: 453 AMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGE 512

Query: 565 AG 566
            G
Sbjct: 513 LG 514



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 153/306 (50%), Gaps = 24/306 (7%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRA-LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
           ++   F   P   +  ++ Y+R  + ++S ++L  ++    +   T     +I+ YT   
Sbjct: 181 VLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWT----AMISGYTRLG 236

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI-------QGLKQNIF 180
            I +A +LF+E+P+ ++  W AL   Y + G   EA+++F  M         QG + N  
Sbjct: 237 QIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQV 296

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                L ACGH   +  G+ IH  V ++  G D+FV ++L+DMY KCG +++A++VFD  
Sbjct: 297 TAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRT 356

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT--PRVKPNVVTWNTLISGFSKSGDQVM 298
           +E+ + + N+M++     G +  A+++ EE+ T    VKP+ VT+  L++  +  G   +
Sbjct: 357 LERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGG---L 413

Query: 299 VSK---LFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           V K    F+LM    G+EP +  +  ++  L      +EA +  + M  +   P      
Sbjct: 414 VEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIE---PDEVIWG 470

Query: 355 SILPAC 360
           S+L  C
Sbjct: 471 SLLNGC 476


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/509 (33%), Positives = 255/509 (50%), Gaps = 73/509 (14%)

Query: 92  RALQSGKILHAQLIVSGLARL-TQIATKLITFYTEC---------------QNIH----- 130
           ++L+ GK +H  L ++G  R  T ++  LI  Y +C               +N++     
Sbjct: 60  KSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNM 119

Query: 131 -----------HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
                       AR++FD +P+ ++  W  +   YA+ G   EA+  + E    G+K N 
Sbjct: 120 VSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNE 179

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F    +L AC     +    + H  VL   F ++  +  S+ID Y+KCG +E AK+ FDE
Sbjct: 180 FSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDE 239

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M  KDI                                     W TLISG++K GD    
Sbjct: 240 MTVKDIH-----------------------------------IWTTLISGYAKLGDMEAA 264

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            KLF  M     E + VSWT++I+G V     + A D F++M++ G  P   T SS L A
Sbjct: 265 EKLFCEM----PEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCA 320

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVT 418
            AS A++R GKEIHG  I   V  +  V S+L+DMY+K G +  +  +F    ++ + V 
Sbjct: 321 SASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVF 380

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI   A HG   +A+ + + M + R + +  +   +L AC H GLVE G R F  M 
Sbjct: 381 WNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMT 440

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            ++ I+P  EHYAC++DLLGRAG   E    I+ M  EPD  +W A+LG C+ HGN EL 
Sbjct: 441 VQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELG 500

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           + AA  L +L+PES+A  +LL+ +YA+ G
Sbjct: 501 KKAADELIKLDPESSAPYILLSSIYADHG 529



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 182/381 (47%), Gaps = 11/381 (2%)

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           +A +    +AV+    +  QG++    ++ S+L+ CG    +  G+ IH  +    F   
Sbjct: 21  HATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRP 80

Query: 214 AFVVSS-LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             ++S+ LI MY KCG    A KVFD+M  +++ + N MVSGYV+ G+   A  + + + 
Sbjct: 81  NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + +VV+WNT++ G+++ G+       ++  R  G++ +  S+  +++  V +    
Sbjct: 141 ----ERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQ 196

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
                  ++L  GF        SI+ A A    M   K    C   M V+ D+H+ + L+
Sbjct: 197 LNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKR---CFDEMTVK-DIHIWTTLI 252

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
             YAK G +  A  LF +M E+N V+W ++I G    G  + A++LF +M     K +  
Sbjct: 253 SGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQF 312

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F++ L A   +  +  G+ +   M  +  + P     + ++D+  ++G L  +  + + 
Sbjct: 313 TFSSCLCASASIASLRHGKEIHGYMI-RTNVRPNAIVISSLIDMYSKSGSLEASERVFRI 371

Query: 512 MSTEPDLFVWGALLGACKNHG 532
              + D   W  ++ A   HG
Sbjct: 372 CDDKHDCVFWNTMISALAQHG 392



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 144/316 (45%), Gaps = 36/316 (11%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH--- 145
           ++ R LQ  +  H Q++V+G      ++  +I  Y +C  +  A+  FDE+   +IH   
Sbjct: 190 VKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWT 249

Query: 146 ----------------------------RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
                                        W AL   Y R+G    A+ +F +M   G+K 
Sbjct: 250 TLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKP 309

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
             F   S L A   ++ +  G++IH  +++ +   +A V+SSLIDMYSK GS+E +++VF
Sbjct: 310 EQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVF 369

Query: 238 DEMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
               +K D V  N M+S   Q GL  +AL +++++   RV+PN  T   +++  S SG  
Sbjct: 370 RICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLV 429

Query: 297 VMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
               + F+ M  + G+ PD   +  +I  L    C  E     +EM    F P     ++
Sbjct: 430 EEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEM---PFEPDKHIWNA 486

Query: 356 ILPACASAANMRRGKE 371
           IL  C    N   GK+
Sbjct: 487 ILGVCRIHGNEELGKK 502


>gi|116830405|gb|ABK28160.1| unknown [Arabidopsis thaliana]
          Length = 614

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 272/540 (50%), Gaps = 79/540 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ILHAQ++ +G       AT L++ Y + + +  A  + DE+P+  I    A       
Sbjct: 50  GRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLE 109

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+ ++A  +F +  + G   N   + SVL  CG   DI  G ++H L +K  F  + +V
Sbjct: 110 NGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCG---DIEGGMQLHCLAMKSGFEMEVYV 166

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG---LATEALNLVEEIGT 273
            +SL+ MYS+CG    A ++F+++  K +V  NA +SG ++ G   L     NL+ +  +
Sbjct: 167 GTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRKFSS 226

Query: 274 PRVKPNVVTWNTLISG--------FSKSGDQVMVSKLFQLMRAKGV-------------- 311
              +PN VT+   I+         + +    +++ K FQ     G               
Sbjct: 227 E--EPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKS 284

Query: 312 ----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT--------- 352
                       +++SW SVISG++ N  ++ A + F+++ S+G  P SAT         
Sbjct: 285 AYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFS 344

Query: 353 --------------------------ISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
                                     ++S+L AC+    ++ GKEIHG  I    E D+ 
Sbjct: 345 QLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIF 404

Query: 387 VRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           V ++L+DMY KCG  S AR +FD+     ++ V WN MI G   HG C+ AIE+F  + E
Sbjct: 405 VLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLRE 464

Query: 445 RKKLDHL-SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
            K    L +FTAVL+AC H G VE G ++F +MQE+Y   P TEH  CM+DLLGR+GRL 
Sbjct: 465 EKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLR 524

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA E+I  MS         +LLG+C+ H +  L E AA  L+ELEPE+ A  ++L+ +YA
Sbjct: 525 EAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYA 583



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 190/416 (45%), Gaps = 56/416 (13%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N F  P +LK+C  L D+  G  +H+ V+K  F  D F  ++L+ MY K   V  A KV 
Sbjct: 30  NKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVL 89

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT--------------- 282
           DEM E+ I ++NA VSG ++ G   +A  +  +        N VT               
Sbjct: 90  DEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCGDIEGGM 149

Query: 283 -----------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                              +L+S +S+ G+ V+ +++F+ +  K     VV++ + ISGL
Sbjct: 150 QLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHK----SVVTYNAFISGL 205

Query: 326 VHNFCND---EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           + N   +     F+  ++  S+   P   T  + + ACAS  N++ G+++HG  +    +
Sbjct: 206 MENGVMNLVPSVFNLMRKFSSEE--PNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQ 263

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQ 441
            +  V +AL+DMY+KC     A  +F ++ + RN ++WNS+I G   +G  + A+ELF +
Sbjct: 264 FETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEK 323

Query: 442 ME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           ++ E  K D  ++ ++++    +G V    + F  M     +        C+  LL    
Sbjct: 324 LDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMV----PSLKCLTSLLSACS 379

Query: 501 RL------AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
            +       E +  +   + E D+FV  +L+      G   L+  A +     EP+
Sbjct: 380 DIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCG---LSSWARRIFDRFEPK 432



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T   +L +CA   ++ +G+ +H   +  G   D+   +ALV MY K   +++A  +
Sbjct: 29  PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKV 88

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLV 466
            D+M ER   + N+ + G   +G+C +A  +F         ++ ++  +VL  C   G +
Sbjct: 89  LDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDI 145

Query: 467 ELGQRL 472
           E G +L
Sbjct: 146 EGGMQL 151


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/545 (31%), Positives = 275/545 (50%), Gaps = 44/545 (8%)

Query: 60  FIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKL 119
            + A +   + S +F L  A  S  +      R    G  L +  + SGLA     A+ L
Sbjct: 80  LLRAMHAQGLASNTFALGSALRSAAVA-----RRPAIGAQLQSLALKSGLANNVFAASAL 134

Query: 120 ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
           +  Y +C  +  AR +FD +P+ N   W AL   Y   G    A+ +F EM  +GL  + 
Sbjct: 135 LDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDE 194

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
               S+L A    S      ++H  ++K+       V+++ I  YS+CGS++ ++++FD 
Sbjct: 195 ATFASLLTAVEGPSCF-LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDG 253

Query: 240 MVE-KDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           + + +D+++ NAM+  Y   G+  EA+   V  +    V P++ ++ ++IS  S+ G   
Sbjct: 254 IGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDD 313

Query: 298 MVSKLFQLMRAK----GVEP-------------------------------DVVSWTSVI 322
              ++   +  K    GV P                               D VSW S++
Sbjct: 314 HQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSML 373

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           +G   +  + +A   F+ M S+         S+ L + +  A ++ GK+IHG  I  G  
Sbjct: 374 TGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFA 433

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            +  V S+L+ MY+K G I +AR  F++  + ++V WN+MIFG A HG  +    LFN+M
Sbjct: 434 SNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEM 493

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
            +RK  LDH++F  ++T+C H GLV+ G  + N M+ KY +  R EHYAC VDL GRAG+
Sbjct: 494 LQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQ 553

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L +A ++I +M  EPD  VW  LLGAC+ HGN+ELA   A HL   EP   +  +LL+ +
Sbjct: 554 LDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSM 613

Query: 562 YANAG 566
           Y+  G
Sbjct: 614 YSGLG 618



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 229/484 (47%), Gaps = 54/484 (11%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTEC--QNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           HA L+ SG+A  T    +L+T Y+      +  AR +FDE+P+ +   W AL  A A  G
Sbjct: 14  HASLLKSGVAAPTPW-NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASG 72

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            H EA  +   MH QGL  N F + S L++         G ++ SL LK     + F  S
Sbjct: 73  AHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAAS 132

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +L+D+Y+KCG V  A++VFD M E++ V+ NA+++GY + G    AL L  E+    + P
Sbjct: 133 ALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAP 192

Query: 279 NVVTW----------------------------------NTLISGFSKSGDQVMVSKLFQ 304
           +  T+                                  N  I+ +S+ G      ++F 
Sbjct: 193 DEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFD 252

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACAS- 362
            +   G   D++SW +++    HN  +DEA   F  M+ + G  P   + +SI+ +C+  
Sbjct: 253 GI---GDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEH 309

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG---FISEARTLFDKMSERNTVTW 419
             +  +G+ IHG  I   +EG   V +AL+ MY +      + +A   F+ +  ++TV+W
Sbjct: 310 GHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSW 369

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSM+ G + HG   +A++ F  M  E  + D  +F+A L +   + +++LG+++  ++  
Sbjct: 370 NSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIH 429

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
                      + ++ +  ++G + +A   +E     S+ P    W A++     HG  E
Sbjct: 430 S-GFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVP----WNAMIFGYAQHGQAE 484

Query: 536 LAEI 539
             +I
Sbjct: 485 NVDI 488


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 274/526 (52%), Gaps = 48/526 (9%)

Query: 78  PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
           P A    +    + +A   G  LHA  + +G+     ++  +I  Y++C N+  AR +FD
Sbjct: 3   PEAIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFD 62

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
           E+   N+  W A+   Y + G    A+ +F +M I     N +V  SV+ AC  L+ +  
Sbjct: 63  EMSDRNLVSWSAIISGYDQTGQPLLALNLFSQMRI---VPNEYVFASVISACASLTALSQ 119

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV- 256
           G ++H+  LK    + +FV ++LI MY KCG    A  V + M E + V+ NA+++G+V 
Sbjct: 120 GLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVE 179

Query: 257 ---------------QRGLATEALNLVEEIGT---------------PRVKPNV----VT 282
                          Q+G A +       +G                  +K N+      
Sbjct: 180 NQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFI 239

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND--EAFDTFKE 340
            N +I+ +SK        K+F L++    E D++SW ++++     FC D   A   F++
Sbjct: 240 GNVIITMYSKFNLIEEAEKVFGLIK----EKDLISWNTLVTACC--FCKDHERALRVFRD 293

Query: 341 MLSQGFC-PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           ML   F  P   T + +L ACA  A++R GK+IHG  I      D+ V +ALV+MYAKCG
Sbjct: 294 MLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCG 353

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLT 458
            I  +  +F + S+RN V+WN++I    NHG    A+E F +M+      D ++F  +LT
Sbjct: 354 SIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLT 413

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           AC H GLVE GQ  FN M+E Y I P  EH++C++DLLGRAGRL EA E ++ +    D 
Sbjct: 414 ACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDP 473

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
            + G+LL AC+ HG++ + E  A  L +L+P + +  +LL++LYA+
Sbjct: 474 IILGSLLSACRLHGDMVIGEHLATQLLKLQPVTTSPYVLLSNLYAS 519


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/545 (31%), Positives = 275/545 (50%), Gaps = 44/545 (8%)

Query: 60  FIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKL 119
            + A +   + S +F L  A  S  +      R    G  L +  + SGLA     A+ L
Sbjct: 80  LLRAMHAQGLASNTFALGSALRSAAVA-----RRPAIGAQLQSLALKSGLANNVFAASAL 134

Query: 120 ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
           +  Y +C  +  AR +FD +P+ N   W AL   Y   G    A+ +F EM  +GL  + 
Sbjct: 135 LDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDE 194

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
               S+L A    S      ++H  ++K+       V+++ I  YS+CGS++ ++++FD 
Sbjct: 195 ATFASLLTAVEGPSCF-LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDG 253

Query: 240 MVE-KDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           + + +D+++ NAM+  Y   G+  EA+   V  +    V P++ ++ ++IS  S+ G   
Sbjct: 254 IGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDD 313

Query: 298 MVSKLFQLMRAK----GVEP-------------------------------DVVSWTSVI 322
              ++   +  K    GV P                               D VSW S++
Sbjct: 314 HQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSML 373

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           +G   +  + +A   F+ M S+         S+ L + +  A ++ GK+IHG  I  G  
Sbjct: 374 TGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFA 433

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            +  V S+L+ MY+K G I +AR  F++  + ++V WN+MIFG A HG  +    LFN+M
Sbjct: 434 SNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEM 493

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
            +RK  LDH++F  ++T+C H GLV+ G  + N M+ KY +  R EHYAC VDL GRAG+
Sbjct: 494 LQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQ 553

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L +A ++I +M  EPD  VW  LLGAC+ HGN+ELA   A HL   EP   +  +LL+ +
Sbjct: 554 LDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSM 613

Query: 562 YANAG 566
           Y+  G
Sbjct: 614 YSGLG 618



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 220/468 (47%), Gaps = 53/468 (11%)

Query: 117 TKLITFYTEC--QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
            +L+T Y+      +  AR +FDE+P+ +   W AL  A A  G H EA  +   MH QG
Sbjct: 29  NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQG 88

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           L  N F + S L++         G ++ SL LK     + F  S+L+D+Y+KCG V  A+
Sbjct: 89  LASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDAR 148

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW----------- 283
           +VFD M E++ V+ NA+++GY + G    AL L  E+    + P+  T+           
Sbjct: 149 QVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPS 208

Query: 284 -----------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
                                  N  I+ +S+ G      ++F  +   G   D++SW +
Sbjct: 209 CFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGI---GDIRDLISWNA 265

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACAS-AANMRRGKEIHGCAIV 378
           ++    HN  +DEA   F  M+ + G  P   + +SI+ +C+    +  +G+ IHG  I 
Sbjct: 266 MLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIK 325

Query: 379 MGVEGDLHVRSALVDMYAKCG---FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
             +EG   V +AL+ MY +      + +A   F+ +  ++TV+WNSM+ G + HG   +A
Sbjct: 326 SALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADA 385

Query: 436 IELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
           ++ F  M  E  + D  +F+A L +   + +++LG+++  ++             + ++ 
Sbjct: 386 LKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHS-GFASNDFVSSSLIF 444

Query: 495 LLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           +  ++G + +A   +E     S+ P    W A++     HG  E  +I
Sbjct: 445 MYSKSGIIDDARKSFEEADKSSSVP----WNAMIFGYAQHGQAENVDI 488



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 19/258 (7%)

Query: 283 WNTLISGFSKSGDQVMVS--KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           WN L++ +S+S    + +  ++F  +  +    D VSW ++++    +  + EA+   + 
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRR----DEVSWNALLAAQAASGAHPEAWRLLRA 83

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M +QG    +  + S L + A A     G ++   A+  G+  ++   SAL+D+YAKCG 
Sbjct: 84  MHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGR 143

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
           + +AR +FD M ERNTV+WN++I G    G    A+ELF +ME E    D  +F ++LTA
Sbjct: 144 VRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTA 203

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV-----DLLGRAGRLAEAYEMIKTMST 514
                 VE G   F M Q   KI+         V         + G L ++  +   +  
Sbjct: 204 ------VE-GPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGD 256

Query: 515 EPDLFVWGALLGACKNHG 532
             DL  W A+LGA  ++G
Sbjct: 257 IRDLISWNAMLGAYTHNG 274


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/480 (32%), Positives = 258/480 (53%), Gaps = 13/480 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           RA + G+ +HA ++  G      +   LI  YT+C  +  A  +FD +P  +   W  L 
Sbjct: 263 RAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILI 322

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + + G + +A+ V + M   G + N     ++L +C    D+ +   +   + + S  
Sbjct: 323 TGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVT 382

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           T   ++S          +VE  +++  + V+ D   +  ++S   + G+    L+L  ++
Sbjct: 383 TWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGI----LDLGTQV 438

Query: 272 GTPRVK----PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
            +  V+     ++   + L+  +SK G   +   +F  M     E DVV W S+ISGL  
Sbjct: 439 HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRM----TERDVVCWNSMISGLAI 494

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           +  N+EAFD FK+M   G  PT ++ +S++ +CA  +++ +G++IH   +  G + +++V
Sbjct: 495 HSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYV 554

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERK 446
            SAL+DMYAKCG + +AR  FD M  +N V WN MI G A +G+ ++A++LF  M    +
Sbjct: 555 GSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQ 614

Query: 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
           + D ++F AVLT C H GLV+     FN M+  Y I P  EHY C++D LGRAGRL E  
Sbjct: 615 RPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVE 674

Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +I  M  + D  VW  LL AC  H N EL E AAKHL  L+P++ +  +LL+++YA+ G
Sbjct: 675 ALIDNMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLG 734



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 228/453 (50%), Gaps = 23/453 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+  H   +  GL     +   L+  YT+C  +  A  LFD +   N   + A+ G
Sbjct: 155 ALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMG 214

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--------LSDIGTGEKIHSL 204
              + G   +A+ +F  M   G++ +   + SVL +C          +     G+ IH+L
Sbjct: 215 GLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHAL 274

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG---LA 261
           +++  FG+D  V +SLIDMY+KC  +++A KVFD +     V+ N +++G+ Q G    A
Sbjct: 275 IVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKA 334

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
            E LNL+EE G+   +PN VT++ +++   K+ D +    +F     K   P V +W ++
Sbjct: 335 LEVLNLMEESGS---EPNEVTYSNMLASCIKARDVLSARAMFD----KISRPSVTTWNTL 387

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           +SG      + +  + F+ M  Q   P   T++ IL +C+    +  G ++H  ++   +
Sbjct: 388 LSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLL 447

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             D+ V S LVDMY+KCG I  AR +F++M+ER+ V WNSMI G A H   +EA + F Q
Sbjct: 448 HNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQ 507

Query: 442 MEERKKL-DHLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMPRTEHYACMVDLLGRA 499
           M     +    S+ +++ +C  +  V  G+++   ++++ Y         + ++D+  + 
Sbjct: 508 MRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYD--QNVYVGSALIDMYAKC 565

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           G + +A      M T+ ++  W  ++     +G
Sbjct: 566 GNMDDARVFFDCMVTK-NIVAWNEMIHGYAQNG 597



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 196/422 (46%), Gaps = 33/422 (7%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           ++  AR L DE+P  N+  W  +  A AR     EA+ ++  M  +GL    F + SVL 
Sbjct: 89  DLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLS 148

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           ACG ++ +  G + H L +K     + FV ++L+ MY+KCG VE A ++FD M   + V+
Sbjct: 149 ACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVS 208

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG----DQVMVSKLF 303
             AM+ G VQ G   +AL L   +    V+ + V  ++++   +++     D V   +L 
Sbjct: 209 FTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLG 268

Query: 304 QLMRA----KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS--SIL 357
           Q + A    KG   D     S+I         DEA   F  +      P  +T+S   ++
Sbjct: 269 QCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSL------PNISTVSWNILI 322

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
                A +  +  E+       G E +    S ++    K   +  AR +FDK+S  +  
Sbjct: 323 TGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVT 382

Query: 418 TWNSMIFGCANHGYCDE-----AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
           TWN+++      GYC E      +ELF +M+ +  + D  +   +L++C  +G+++LG +
Sbjct: 383 TWNTLL-----SGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQ 437

Query: 472 LFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
           + +      + +   + +    +VD+  + G++  A  +   M TE D+  W +++    
Sbjct: 438 VHS---ASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRM-TERDVVCWNSMISGLA 493

Query: 530 NH 531
            H
Sbjct: 494 IH 495



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 50/327 (15%)

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           D   +N +V  Y   GL  +AL     +  PR  PN  ++N  +S   ++GD      L 
Sbjct: 42  DTFLINRLVELYSVSGLPCDALRAFRSL--PR--PNAYSYNAALSAARRAGDLDAARALL 97

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             M  +    +VVSW +VI+ L  +    EA + ++ ML +G  PT  T++S+L AC + 
Sbjct: 98  DEMPDR----NVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAV 153

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A +  G+  HG A+ +G++ +L V +AL+ MY KCG + +A  LFD M+  N V++ +M+
Sbjct: 154 AALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMM 213

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVE--------------- 467
            G    G  D+A+ LF +M     ++D ++ ++VL +C      E               
Sbjct: 214 GGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHA 273

Query: 468 ------------LGQRLFNM------MQEKYKI---MPR--TEHYACMVDLLGRAGRLAE 504
                       +G  L +M      M E  K+   +P   T  +  ++   G+AG  A+
Sbjct: 274 LIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAK 333

Query: 505 AYEMIKTM---STEPDLFVWGALLGAC 528
           A E++  M    +EP+   +  +L +C
Sbjct: 334 ALEVLNLMEESGSEPNEVTYSNMLASC 360



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           + ++Y+  I    R  ++  G+ +HAQ++  G  +   + + LI  Y +C N+  AR+ F
Sbjct: 516 TESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFF 575

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           D +   NI  W  +   YA+ G+ ++AV +F  M     + +     +VL  C H   + 
Sbjct: 576 DCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVD 635

Query: 197 TGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
                 +  ++ ++G        + LID   + G + + + + D M  KD
Sbjct: 636 EAIAFFN-SMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKD 684


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 264/473 (55%), Gaps = 21/473 (4%)

Query: 104 LIVSGLARLTQIATKLITFYTECQNI----HHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           ++V+GL     +  +LI  Y+   ++     +A  LFDEIPK ++     +    A+   
Sbjct: 1   MVVNGLMSNLSVVGELI--YSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMK 58

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
            ++ V+++ EM  +G+  + +    VLKAC  L     G   H  V++H F  + +V ++
Sbjct: 59  PEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNA 118

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           LI  ++ CG +  A ++FD+  +   VA ++M SGY +RG   EA+ L +E+       +
Sbjct: 119 LILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----D 174

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
            V WN +I+G  K  +     +LF     +  E DVV+W ++ISG V+     EA   FK
Sbjct: 175 QVAWNVMITGCLKCKEMDSARELFD----RFTEKDVVTWNAMISGYVNCGYPKEALGIFK 230

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIH-----GCAIVMGVEGDLHVRSALVDM 394
           EM   G  P   TI S+L ACA   ++  GK +H       ++   +     + +AL+DM
Sbjct: 231 EMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDM 290

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSF 453
           YAKCG I  A  +F  + +R+  TWN++I G A H + + +IE+F +M+  K   + ++F
Sbjct: 291 YAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTF 349

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
             V+ AC H G V+ G++ F++M++ Y I P  +HY CMVD+LGRAG+L EA+  +++M 
Sbjct: 350 IGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMK 409

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            EP+  VW  LLGACK +GN+EL + A + L  +  + + + +LL+++YA+ G
Sbjct: 410 IEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTG 462



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 149/377 (39%), Gaps = 86/377 (22%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           +G   H +++  G      +   LI F+  C ++  A  LFD+  K +   W ++T  YA
Sbjct: 96  NGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYA 155

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +RG   EA+ +F EM  +                                       D  
Sbjct: 156 KRGKIDEAMRLFDEMPYK---------------------------------------DQV 176

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             + +I    KC  ++ A+++FD   EKD+V  NAM+SGYV  G   EAL + +E+    
Sbjct: 177 AWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAG 236

Query: 276 VKPNVVT----------------------------------------WNTLISGFSKSGD 295
             P+VVT                                        WN LI  ++K G 
Sbjct: 237 EHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGS 296

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                ++F+ ++ +    D+ +W ++I GL  +   + + + F+EM      P   T   
Sbjct: 297 IDRAIEVFRGVKDR----DLSTWNTLIVGLALHHA-EGSIEMFEEMQRLKVWPNEVTFIG 351

Query: 356 ILPACASAANMRRGKEIHGCAIVM-GVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-E 413
           ++ AC+ +  +  G++       M  +E ++     +VDM  + G + EA    + M  E
Sbjct: 352 VILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIE 411

Query: 414 RNTVTWNSMIFGCANHG 430
            N + W +++  C  +G
Sbjct: 412 PNAIVWRTLLGACKIYG 428


>gi|218193953|gb|EEC76380.1| hypothetical protein OsI_13992 [Oryza sativa Indica Group]
          Length = 822

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 238/436 (54%), Gaps = 5/436 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           LI+ Y    ++  A  L  ++ ++    ++  W +L   +       EA+  F  M + G
Sbjct: 221 LISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAG 280

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++ N   I   + AC  L  +   +++HS  +K     +    +SL+DMY+KCG +  A 
Sbjct: 281 VEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAW 340

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           ++F  + +KDI + N+M+SGY Q G   +A  L  ++    V+ NV+TWNT+ISG+ ++G
Sbjct: 341 RIFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNG 400

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           D     +LFQ+M + GV+ D  +W  +I+G VHN   D A   F++M +    P   TI 
Sbjct: 401 DDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITIL 460

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           SI+PA  +     + +EIH C     +E D  + +AL++ Y+K G ++ A  +FD  S R
Sbjct: 461 SIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSR 520

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           N ++WN +I     HG  +EA++LF QM++   + DH +   V+ A    G V  G + F
Sbjct: 521 NIISWNCIILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTF 580

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M   Y I P  +HYA MVDLLGR+GRL EAYE+I  M   P+  VW   L A   HGN
Sbjct: 581 FNMANDYNITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGN 640

Query: 534 IELAEIAAKHLSELEP 549
           + LA +AA+ LS ++P
Sbjct: 641 VRLAHLAARELSAIDP 656



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 210/365 (57%), Gaps = 4/365 (1%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           TKLIT ++    +  AR +FD + + ++  W A+ GAYA RG + + + +   M  +G+ 
Sbjct: 49  TKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVL 108

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG---TDAFVVSSLIDMYSKCGSVEKA 233
            + F+I  +L+AC +  D+  G  +HS+ ++  F     D  V +S++ MY+KCG +  A
Sbjct: 109 PDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWA 168

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           +KVFD+MV +D+   N+M+ GY +     EA +L++ +     +P VVTWNTLIS +++ 
Sbjct: 169 RKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARF 228

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD  +  +L   M   GV PDVV+WTS++SG VH   +DEA   F  M   G  P   +I
Sbjct: 229 GDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSI 288

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +  + ACAS   + + KE+H  AI +G   ++   ++LVDMYAKCG I  A  +F  + +
Sbjct: 289 ACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPD 348

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           ++  +WNSMI G A  GYC +A ELF +ME    + + +++  +++     G  E    L
Sbjct: 349 KDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFEL 408

Query: 473 FNMMQ 477
           F MM+
Sbjct: 409 FQMME 413



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 147/345 (42%), Gaps = 10/345 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L   K LH+  I  G          L+  Y +C  I  A  +F  IP  +I  W ++ 
Sbjct: 299 KLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMI 358

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ GY  +A  +F +M   G+++N+    +++       D     ++  ++  H   
Sbjct: 359 SGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVK 418

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMV----EKDIVAMNAMVSGYVQRGLATEALNL 267
            D    + LI      G  ++A ++F +M       D + + +++  +     + +   +
Sbjct: 419 RDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREI 478

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
              I    ++ +    N LI+ +SKSG+      +F +  ++    +++SW  +I   V 
Sbjct: 479 HACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSR----NIISWNCIILAHVL 534

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLH 386
           +   +EA D F +M  +G  P   T+ +++ A      +  G +     A    +  +L 
Sbjct: 535 HGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELD 594

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHG 430
             +A+VD+  + G + EA  L D+M    N+  W++ +     HG
Sbjct: 595 HYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHG 639


>gi|15227029|ref|NP_178378.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546778|sp|Q1PFA6.2|PP144_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02750
 gi|2947066|gb|AAC05347.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250526|gb|AEC05620.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 272/540 (50%), Gaps = 79/540 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ILHAQ++ +G       AT L++ Y + + +  A  + DE+P+  I    A       
Sbjct: 50  GRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLE 109

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G+ ++A  +F +  + G   N   + SVL  CG   DI  G ++H L +K  F  + +V
Sbjct: 110 NGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCG---DIEGGMQLHCLAMKSGFEMEVYV 166

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG---LATEALNLVEEIGT 273
            +SL+ MYS+CG    A ++F+++  K +V  NA +SG ++ G   L     NL+ +  +
Sbjct: 167 GTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRKFSS 226

Query: 274 PRVKPNVVTWNTLISG--------FSKSGDQVMVSKLFQLMRAKGV-------------- 311
              +PN VT+   I+         + +    +++ K FQ     G               
Sbjct: 227 E--EPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKS 284

Query: 312 ----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT--------- 352
                       +++SW SVISG++ N  ++ A + F+++ S+G  P SAT         
Sbjct: 285 AYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFS 344

Query: 353 --------------------------ISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
                                     ++S+L AC+    ++ GKEIHG  I    E D+ 
Sbjct: 345 QLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIF 404

Query: 387 VRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           V ++L+DMY KCG  S AR +FD+     ++ V WN MI G   HG C+ AIE+F  + E
Sbjct: 405 VLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLRE 464

Query: 445 RKKLDHL-SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
            K    L +FTAVL+AC H G VE G ++F +MQE+Y   P TEH  CM+DLLGR+GRL 
Sbjct: 465 EKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLR 524

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EA E+I  MS         +LLG+C+ H +  L E AA  L+ELEPE+ A  ++L+ +YA
Sbjct: 525 EAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYA 583



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 190/416 (45%), Gaps = 56/416 (13%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N F  P +LK+C  L D+  G  +H+ V+K  F  D F  ++L+ MY K   V  A KV 
Sbjct: 30  NKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVL 89

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT--------------- 282
           DEM E+ I ++NA VSG ++ G   +A  +  +        N VT               
Sbjct: 90  DEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCGDIEGGM 149

Query: 283 -----------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                              +L+S +S+ G+ V+ +++F+ +  K     VV++ + ISGL
Sbjct: 150 QLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHK----SVVTYNAFISGL 205

Query: 326 VHNFCND---EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           + N   +     F+  ++  S+   P   T  + + ACAS  N++ G+++HG  +    +
Sbjct: 206 MENGVMNLVPSVFNLMRKFSSEE--PNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQ 263

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHGYCDEAIELFNQ 441
            +  V +AL+DMY+KC     A  +F ++ + RN ++WNS+I G   +G  + A+ELF +
Sbjct: 264 FETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEK 323

Query: 442 ME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           ++ E  K D  ++ ++++    +G V    + F  M     +        C+  LL    
Sbjct: 324 LDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMV----PSLKCLTSLLSACS 379

Query: 501 RL------AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
            +       E +  +   + E D+FV  +L+      G   L+  A +     EP+
Sbjct: 380 DIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCG---LSSWARRIFDRFEPK 432



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T   +L +CA   ++ +G+ +H   +  G   D+   +ALV MY K   +++A  +
Sbjct: 29  PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKV 88

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLV 466
            D+M ER   + N+ + G   +G+C +A  +F         ++ ++  +VL  C   G +
Sbjct: 89  LDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDI 145

Query: 467 ELGQRL 472
           E G +L
Sbjct: 146 EGGMQL 151


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/488 (31%), Positives = 260/488 (53%), Gaps = 42/488 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           +  ++++  R ++  +   LH+Q+I +G  + + ++  L+  Y +C  I  A  LFDE+P
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGE 199
             +   W ++  A+ +    +  +++ + M    GL+ + FV   +++AC  L  +  G+
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H+  +   F  D  V SSLIDMY+KCG  ++A+ VFD ++ K                
Sbjct: 126 QVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFK---------------- 169

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                              N V+W ++ISG+++SG +     LF     +    ++ SWT
Sbjct: 170 -------------------NSVSWTSMISGYARSGRKCEAMDLFLQAPVR----NLFSWT 206

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIV 378
           ++ISGL+ +     +F  F EM  +G        +SS++  CA+ A +  GK+IHG  I 
Sbjct: 207 ALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIA 266

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           +G E  L + +ALVDMYAKC  I  A+ +F +M  ++ ++W S+I G A HG  +EA+ L
Sbjct: 267 LGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTL 326

Query: 439 FNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           +++M   R K + ++F  +L AC H GLV  G+ LF  M   Y I P  +HY C++DLL 
Sbjct: 327 YDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLS 386

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           R+G L EA  ++  +  +PD   W +LL AC  H N+E+    A  + +L+PE  +  +L
Sbjct: 387 RSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYIL 446

Query: 558 LTDLYANA 565
           L+++YA A
Sbjct: 447 LSNVYAGA 454


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 255/476 (53%), Gaps = 40/476 (8%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           LI+ Y + + +  AR  FD +P+ N+  W A+   Y + G   EA T+F +M     ++N
Sbjct: 84  LISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMP----EKN 139

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
           +     +L     +  I     +  ++       D    +++I  Y + G + +A+++FD
Sbjct: 140 VVSWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEARELFD 195

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
           EM  +++++   M+SGYVQ G    A  L E +     + N V+W  ++ G+++ G    
Sbjct: 196 EMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP----EKNEVSWTAMLMGYTQGGRIEE 251

Query: 299 VSKLFQLMRAKGV---------------------------EPDVVSWTSVISGLVHNFCN 331
            S+LF  M  K V                           E D  +W+++I         
Sbjct: 252 ASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFE 311

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
            EA + F  M  +G      ++ S+L  CAS A++  G+++H   +    + D+ V S L
Sbjct: 312 VEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVL 371

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           + MY KCG + +AR +FD+ S ++ V WNS+I G A HG  +EA+++F++M       D 
Sbjct: 372 ITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDG 431

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
           ++F  VL+AC + G V+ G  +F  M+ KY + P+TEHYACMVDLLGRAG + +A ++I+
Sbjct: 432 VTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQ 491

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            M  E D  +WGALLGAC+ H N+ LAE+AAK L +LEP++A   +LL+++YA+ G
Sbjct: 492 KMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKG 547



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 160/321 (49%), Gaps = 29/321 (9%)

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           A   +S I  Y++ G +E A++VFDEM +K IV+ N+MV+GY Q     EA  L +++  
Sbjct: 16  AIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP- 74

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
              + N V+WN LISG+ K+       K F  M     E +VVSWT+++ G V      E
Sbjct: 75  ---ERNTVSWNGLISGYVKNRMVSEARKAFDTM----PERNVVSWTAMVRGYVQEGLVSE 127

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   F +M  +     +  +  ++        +RR  E  G   +M V+ D+  R+ ++ 
Sbjct: 128 AETLFWQMPEKNVVSWTVMLGGLI-------QVRRIDEARGLFDIMPVK-DVVARTNMIS 179

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF 453
            Y + G ++EAR LFD+M  RN ++W +MI G   +G  D A +LF  M E+   + +S+
Sbjct: 180 GYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK---NEVSW 236

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKT 511
           TA+L      G +E    LF+        MP     AC  M+   G+ G +A+A ++   
Sbjct: 237 TAMLMGYTQGGRIEEASELFD-------AMPVKAVVACNAMILGFGQNGEVAKARQVFDQ 289

Query: 512 MSTEPDLFVWGALLGACKNHG 532
           +  E D   W A++   +  G
Sbjct: 290 IR-EKDDGTWSAMIKVYERKG 309



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 144/351 (41%), Gaps = 51/351 (14%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T +I+ Y +   +  AR LFDE+P+ N+  W  +   Y + G    A  +F  M     +
Sbjct: 175 TNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP----E 230

Query: 177 QNIFVIPSVLKACGHLSDI-GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
           +N     ++L        I    E   ++ +K     +A ++      + + G V KA++
Sbjct: 231 KNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILG-----FGQNGEVAKARQ 285

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN---------------- 279
           VFD++ EKD    +AM+  Y ++G   EALNL   +    V+ N                
Sbjct: 286 VFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLAS 345

Query: 280 -------------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
                              V   + LI+ + K GD V   ++F     K    D+V W S
Sbjct: 346 LDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPK----DIVMWNS 401

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI-HGCAIVM 379
           +I+G   +   +EA   F EM S G      T   +L AC+    ++ G EI        
Sbjct: 402 IITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKY 461

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANH 429
            VE      + +VD+  + G +++A  L  KM  E + + W +++  C  H
Sbjct: 462 LVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTH 512



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 117/270 (43%), Gaps = 56/270 (20%)

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           + +N+ I+ +++ G      ++F  M  KG+    VSW S+++G   N    EA   F +
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGI----VSWNSMVAGYFQNNRPREARYLFDK 72

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M      P   T+S                                  + L+  Y K   
Sbjct: 73  M------PERNTVSW---------------------------------NGLISGYVKNRM 93

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460
           +SEAR  FD M ERN V+W +M+ G    G   EA  LF QM E+   + +S+T +L   
Sbjct: 94  VSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEK---NVVSWTVMLGGL 150

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
             V  ++  + LF++M  K  ++ RT     M+    + GRLAEA E+   M    ++  
Sbjct: 151 IQVRRIDEARGLFDIMPVK-DVVARTN----MISGYCQEGRLAEARELFDEMPRR-NVIS 204

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEPE 550
           W  ++     +G +++    A+ L E+ PE
Sbjct: 205 WTTMISGYVQNGQVDV----ARKLFEVMPE 230



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 11/243 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  G+ +HA+L+ S       +A+ LIT Y +C ++  AR +FD     +I  W ++  
Sbjct: 345 SLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIIT 404

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
            YA+ G  +EA+ VFHEM   G+  +      VL AC +   +  G E   S+  K+   
Sbjct: 405 GYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVE 464

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG---YVQRGLATEALNL 267
                 + ++D+  + G V  A  +  +M VE D +   A++     ++   LA  A   
Sbjct: 465 PKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKK 524

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLV 326
           + ++      P ++  N   S   + GD   V++L + MR K V      SW  V    V
Sbjct: 525 LLQLEPKNAGPYILLSNIYASK-GRWGD---VAELRRNMRVKKVSKSPGCSWIEV-EKRV 579

Query: 327 HNF 329
           H F
Sbjct: 580 HMF 582


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 167/514 (32%), Positives = 268/514 (52%), Gaps = 45/514 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++G+ +HA    +GL     ++T LI  Y  C     AR +F ++P  ++  W A+   
Sbjct: 116 LRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAG 175

Query: 154 YARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YA  G +  A+    +M   G L+ N   + S+L        +  G  IH+  L+     
Sbjct: 176 YANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQ 235

Query: 213 D---AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           +     + ++L+DMY+KC  +  A +VF  M  ++ V  +A++ G+V     TEA NL +
Sbjct: 236 NEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFK 295

Query: 270 E------------------------------------IGTPRVKPNVVTWNTLISGFSKS 293
           +                                    I    +  ++   N+L+S ++K+
Sbjct: 296 DMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKA 355

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G     +  F  +  K    D +S+ +++SG V N   +EAF  FK+M +    P  AT+
Sbjct: 356 GLINEATMFFDEIAVK----DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATM 411

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S++PAC+  A ++ GK  HG  I+ G+  +  + ++L+DMYAKCG I  +R +FDKM  
Sbjct: 412 VSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPA 471

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           R+ V+WN+MI G   HG   EA  LF  M+ +    D ++F  ++ AC H GLV  G+  
Sbjct: 472 RDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHW 531

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ M  KY I+PR EHY CMVDLL R G L EAY+ I++M  + D+ VWGALLGAC+ H 
Sbjct: 532 FDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHK 591

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           NI+L +  ++ + +L PE   N +LL+++++ AG
Sbjct: 592 NIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAG 625



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 216/441 (48%), Gaps = 45/441 (10%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           AR +FD IP  +   + AL  AY+  G    A+ ++  M    +  N +  P VLKAC  
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSA 112

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L D+  G  IH+        TD FV ++LID+Y +C     A+ VF +M  +D+VA NAM
Sbjct: 113 LVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAM 172

Query: 252 VSGYVQRGLATEAL-NLVEEIGTPRVKPNVVTWNTLISGFSKSG---------------- 294
           ++GY   G+   A+ +L++      ++PN  T  +L+   ++ G                
Sbjct: 173 LAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRAC 232

Query: 295 -----DQVMVSKLFQLMRAK--------------GVEPDVVSWTSVISGLVHNFCN--DE 333
                +QV++      M AK               V  D V+W+++I G V   C+   E
Sbjct: 233 LEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSALIGGFV--LCDRMTE 289

Query: 334 AFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           AF+ FK+ML +G C  SAT ++S L  CAS A++  G ++H      G+  DL   ++L+
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLL 349

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHL 451
            MYAK G I+EA   FD+++ ++T+++ +++ GC  +G  +EA  +F +M+    + D  
Sbjct: 350 SMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +  +++ AC H+  ++ G+     +  +  +   T     ++D+  + G++  + ++   
Sbjct: 410 TMVSLIPACSHLAALQHGKCSHGSVIIR-GLALETSICNSLIDMYAKCGKIDLSRQVFDK 468

Query: 512 MSTEPDLFVWGALLGACKNHG 532
           M    D+  W  ++     HG
Sbjct: 469 MPAR-DVVSWNTMIAGYGIHG 488



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 17/253 (6%)

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
           W   +      G   +  ++F  + A    PD  ++ ++I           A D ++ ML
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPA----PDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
                P   T   +L AC++  ++R G+ IH  A   G+  DL V +AL+D+Y +C    
Sbjct: 93  RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFG 152

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTAC 460
            AR +F KM  R+ V WN+M+ G ANHG    AI     M++   L  +  +  ++L   
Sbjct: 153 PARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLL 212

Query: 461 CHVGLVELGQRLFN------MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
              G +  G  +        + Q + +++  T     ++D+  +  +L  A  +   M  
Sbjct: 213 AQHGALFQGTSIHAYCLRACLEQNEEQVLIGT----ALLDMYAKCKQLVYACRVFHGMPV 268

Query: 515 EPDLFVWGALLGA 527
             D+  W AL+G 
Sbjct: 269 RNDV-TWSALIGG 280


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 268/507 (52%), Gaps = 43/507 (8%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +HA ++ S  +    +   LI  Y  C  +  A  +   +   ++  W +L   Y +
Sbjct: 283 GKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQ 342

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
              ++EA+  F +M   G K +   + SV+ A G LS++  G ++H+ V+KH + ++  V
Sbjct: 343 NLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLV 402

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++LIDMYSKC       + F  M EKD+++   +++GY       EAL L  ++   R+
Sbjct: 403 GNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRM 462

Query: 277 KPN----------------------------------VVTWNTLISGFSKSGDQVMVSKL 302
           + +                                   V  N L+  + K  +    S++
Sbjct: 463 EIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNELVDVYGKCRNMGYASRV 522

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           F+ ++ K    DVVSWTS+IS    N   +EA + F+ M   G    S  +  IL A AS
Sbjct: 523 FESIKGK----DVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAAS 578

Query: 363 AANMRRGKEIHGCAIVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            + +++G+EIHG  +  G  +EG + V  A+VDMYA CG +  A+ +FD++  +  + + 
Sbjct: 579 LSALKKGREIHGYLLRKGFCLEGSIAV--AVVDMYACCGDLQSAKAVFDRIERKGLLQYT 636

Query: 421 SMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           SMI     HG    ++ELFN+M  E    DH+SF A+L AC H GL++ G+R   +M+ +
Sbjct: 637 SMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELE 696

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           YK+ P  EHY C+VD+LGRA  + EA+E +K M TEP   VW ALL AC++H   E+ EI
Sbjct: 697 YKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEI 756

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA+ L ELEP++  N +L+++++A  G
Sbjct: 757 AAQRLLELEPKNPGNLVLVSNVFAEQG 783



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 211/436 (48%), Gaps = 44/436 (10%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +FDE+       W AL GAY   G    A+ ++  M ++G+  +++  P +LKACG L D
Sbjct: 118 VFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLRD 177

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVS 253
           I +G ++H +++K  F +  F+V++L+ MY+K   +  AK++FD   EK D V  N+++S
Sbjct: 178 IRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILS 237

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPN---------------------------------- 279
            Y   G + E L L  E+       N                                  
Sbjct: 238 SYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSF 297

Query: 280 -VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
            V   N LI+ +++ G  +   ++ +LM       DVV+W S+I G V N    EA   F
Sbjct: 298 EVYVCNALIAMYARCGKMLEAGRILRLMN----NADVVTWNSLIKGYVQNLMYKEALQFF 353

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
            +M++ G  P   +++S++ A    +N+  G E+H   I  G + +L V + L+DMY+KC
Sbjct: 354 CDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKC 413

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVL 457
                    F  M E++ ++W ++I G A +    EA++LF  + ++R ++D +   ++L
Sbjct: 414 NLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSIL 473

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            AC  +  + + + +   +  K  I    ++   +VD+ G+   +  A  + +++  + D
Sbjct: 474 RACSVLKSMLIVKEIHCHILRKGLIDTVIQNE--LVDVYGKCRNMGYASRVFESIKGK-D 530

Query: 518 LFVWGALLGACKNHGN 533
           +  W +++ +   +GN
Sbjct: 531 VVSWTSMISSSALNGN 546



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 187/389 (48%), Gaps = 41/389 (10%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD-EIPKTNIHRWIAL 150
           R ++SG  LH  L+  G      I   L++ Y +  ++  A+ LFD    K +   W ++
Sbjct: 176 RDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSI 235

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             +Y+  G   E + +F EM + G   N + I S L AC   S    G++IH+ VLK + 
Sbjct: 236 LSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTH 295

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             + +V ++LI MY++CG + +A ++   M   D+V  N+++ GYVQ  +  EAL    +
Sbjct: 296 SFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCD 355

Query: 271 IGTPRVKP-----------------------------------NVVTWNTLISGFSKSGD 295
           +     KP                                   N++  NTLI  +SK   
Sbjct: 356 MIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNL 415

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
              + + F +M     E D++SWT++I+G   N C+ EA   F+++  +        + S
Sbjct: 416 TCYMGRAFLMMH----EKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGS 471

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           IL AC+   +M   KEIH C I+     D  +++ LVD+Y KC  +  A  +F+ +  ++
Sbjct: 472 ILRACSVLKSMLIVKEIH-CHILRKGLIDTVIQNELVDVYGKCRNMGYASRVFESIKGKD 530

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEE 444
            V+W SMI   A +G  +EA+ELF +M E
Sbjct: 531 VVSWTSMISSSALNGNENEAVELFRRMAE 559



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 39/262 (14%)

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW---------- 283
           +KVFDEM ++   A NA++  YV  G    AL +   +    V  ++ ++          
Sbjct: 116 EKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKL 175

Query: 284 -------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
                                    N L+S ++K+       +LF   + KG   D V W
Sbjct: 176 RDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKG---DAVLW 232

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
            S++S    +  + E    F+EM   G    S TI S L AC   +  + GKEIH   + 
Sbjct: 233 NSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLK 292

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
                +++V +AL+ MYA+CG + EA  +   M+  + VTWNS+I G   +    EA++ 
Sbjct: 293 STHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQF 352

Query: 439 FNQM-EERKKLDHLSFTAVLTA 459
           F  M     K D +S T+V+ A
Sbjct: 353 FCDMIAAGHKPDEVSLTSVIAA 374



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 14/230 (6%)

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           K+F  MR +       +W ++I   V N     A   ++ M  +G      +   +L AC
Sbjct: 117 KVFDEMRDR----TAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKAC 172

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVTW 419
               ++R G E+H   + +G      + +ALV MYAK   +S A+ LFD   E+ + V W
Sbjct: 173 GKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLW 232

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAV--LTACCHVGLVELGQRLFNMMQ 477
           NS++   +  G   E ++LF +M+      + S+T V  LTAC      +LG+ +   + 
Sbjct: 233 NSILSSYSTSGKSLETLQLFREMQMTGPASN-SYTIVSALTACEGFSYAKLGKEIHAAV- 290

Query: 478 EKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
              K     E Y C  ++ +  R G++ EA  +++ M+   D+  W +L+
Sbjct: 291 --LKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNN-ADVVTWNSLI 337



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 18/257 (7%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154
           + G+ +H  L+  G      IA  ++  Y  C ++  A+ +FD I +  + ++ ++  AY
Sbjct: 583 KKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAY 642

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE---KIHSLVLKHSFG 211
              G  + +V +F++M  + +  +     ++L AC H   +  G    KI  L  K    
Sbjct: 643 GMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPW 702

Query: 212 TDAFVVSSLIDMYSKCGSVEKA----KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
            + +V   L+DM  +   V +A    K +  E   +   A+ A    + ++ +   A   
Sbjct: 703 PEHYVC--LVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQR 760

Query: 268 VEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGL 325
           + E+  P+   N+V    L+S  F++ G    V K+   M+A G+E     SW   + G 
Sbjct: 761 LLEL-EPKNPGNLV----LVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIE-MDGK 814

Query: 326 VHNF-CNDEAFDTFKEM 341
           VH F   D++    KE+
Sbjct: 815 VHKFTARDKSHPETKEI 831


>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
          Length = 644

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 240/467 (51%), Gaps = 46/467 (9%)

Query: 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKT-----NIHRWIALTGAYARRGYHQEAVT 165
           R T     LI+ Y+ C + ++A   F  +        +   W  L  A+AR G H   + 
Sbjct: 137 RATMSWNTLISAYSVCCDPNNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLE 196

Query: 166 VFHEMHIQGLKQNIFVIPSVLKACGHLSDIG--TGEKIHSL-VLKHSFGTDAFVVSSLID 222
           +F +MH  G + N   +   L AC +  D+    G  IH   V K       FV +SL+ 
Sbjct: 197 LFGDMHRSGCEGNAESVAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVC 256

Query: 223 MYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT 282
           MY K G ++ A++VF E  E+                                   N VT
Sbjct: 257 MYGKLGKMDDAREVFREAGER-----------------------------------NTVT 281

Query: 283 WNTLISGFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           WN LI+ ++ +G  D+ +   +    R   V P+V+SW++VI G   +  N+ A + F+ 
Sbjct: 282 WNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRR 341

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M  Q   P   T++++L AC     +R G+E+H  AI   V+    V + L++MYAKCG 
Sbjct: 342 MQQQWLSPNVVTLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGR 401

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           +++ART+FD M  R+ V+WNSM+ G   HG CD+A+ +F  M E K   D ++F AVL+A
Sbjct: 402 VADARTVFDGMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSA 461

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C H G V  G+RLF+ M  ++KI P  EHY CMVDLLGRAG L EA E I+TM    DL 
Sbjct: 462 CSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEFIETMPMGADLC 521

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           VWGALL +C+ HG+  +AE       +    +  N+ L+T+LYA  G
Sbjct: 522 VWGALLNSCRIHGDAAMAEATIAKALQAGVVTTGNHTLITNLYAACG 568



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 182/441 (41%), Gaps = 87/441 (19%)

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDI 195
           D  P T    W  L  A+  R     A+ ++  M  +     N + +P  L+A    S I
Sbjct: 33  DLPPTTCAVPWNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAA--TSPI 90

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
            +    H+L L      D  V   L+  Y++ G  ++A  VFD M  K            
Sbjct: 91  ASAIHAHALHLGLHAHPD--VAGQLLAAYARHGRADEAHHVFDAMPSKRAT--------- 139

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPD 314
                                    ++WNTLIS +S   D       F  M A G   PD
Sbjct: 140 -------------------------MSWNTLISAYSVCCDPNNAMATFARMAAAGEALPD 174

Query: 315 VVSWTSVISGLVHNFCNDE--AFDTFKEMLSQGFCPTSATISSILPACASAAN--MRRGK 370
            V+WT+++S   H  C       + F +M   G    + +++  L AC  A +  + +G+
Sbjct: 175 AVTWTTLLSA--HARCGKHPVVLELFGDMHRSGCEGNAESVAVALSACPYAGDLALAKGR 232

Query: 371 EIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
            IHG  +  G V G L V ++LV MY K G + +AR +F +  ERNTVTWN++I   A  
Sbjct: 233 AIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAA 292

Query: 430 GYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR- 485
           G CDEA+ +  +ME+R  +   + +S++AV+      G  E    LF  MQ+++ + P  
Sbjct: 293 GMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRRMQQQW-LSPNV 351

Query: 486 ----------TEHYAC------------------------MVDLLGRAGRLAEAYEMIKT 511
                     TE  A                         ++++  + GR+A+A  +   
Sbjct: 352 VTLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGRVADARTVFDG 411

Query: 512 MSTEPDLFVWGALLGACKNHG 532
           M +  DL  W ++L     HG
Sbjct: 412 MKSR-DLVSWNSMLAGYGMHG 431



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A++ G+ +HA  I S + R + +A  LI  Y +C  +  AR +FD +   ++  W ++  
Sbjct: 366 AVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLA 425

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
            Y   G   +A+ VF +M    +  +     +VL AC H   +  G ++   ++L+H   
Sbjct: 426 GYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKIS 485

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
                 + ++D+  + G +++A +  + M
Sbjct: 486 PSMEHYTCMVDLLGRAGLLKEASEFIETM 514


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 165/496 (33%), Positives = 261/496 (52%), Gaps = 37/496 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
            HA +I  GL +   I +  ++  T   ++ ++  +F+ +   +   +  L   +++   
Sbjct: 28  FHAHIIHKGLEQDHFIISHFLSIST---SVSYSTSIFNRLLNPSTFLYNILLKIFSKNSQ 84

Query: 160 HQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
             +  ++F+ M   +    + +  P ++K C +   +  GE +H   ++     D +V S
Sbjct: 85  FIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGS 144

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           SLI  Y KC  +  A+KVFDE+ E+++V+  AMV+GY   G    A  + E +     + 
Sbjct: 145 SLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMP----ER 200

Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--------------------------- 311
           N+ +WN +ISG  K+GD     K+F  M  + V                           
Sbjct: 201 NLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAP 260

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           E DVV+W+++ISG   N   +EA   F EM+S    P    + S++ AC+   N    K 
Sbjct: 261 EKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKW 320

Query: 372 IHGCAIVMGVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           +        ++    HV +AL+DM+AKCG + +A  LF  M  R+ +   S+I G + HG
Sbjct: 321 VDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHG 380

Query: 431 YCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
              EA+ELFN+M +E    D ++FT +LTAC   GL+E G   F+ M+ KY ++P   HY
Sbjct: 381 RGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHY 440

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
           ACMVDLL RAG+L  AY+++K+M  +P    WGALLGACK HG++EL E  A  L ELEP
Sbjct: 441 ACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVELREEVANRLLELEP 500

Query: 550 ESAANNMLLTDLYANA 565
           E A + +LL+++YA+A
Sbjct: 501 EKAGSYVLLSNIYASA 516



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 179/402 (44%), Gaps = 50/402 (12%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y   I++   +  L+ G+I+H   I  G++    + + LI+FY +C+ I  AR +FDEIP
Sbjct: 108 YPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIP 167

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           + N+  W A+   YA  G  + A  VF  M     ++N+    +++   G   D+    K
Sbjct: 168 ERNVVSWTAMVAGYASVGDLENAKRVFERMP----ERNLPSWNAMISGLGKAGDLSGARK 223

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +   +++ +    +F V  +ID Y+K G +  A+ +FDE  EKD+VA +A++SGY +   
Sbjct: 224 VFDEMVERN--VVSFTV--MIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQ 279

Query: 261 ATEALNLVEEIGTPRVKP------------------NVVTW------------------N 284
             EA+ +  E+ +  VKP                  ++  W                   
Sbjct: 280 PNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLA 339

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
            LI   +K G+     KLFQ M ++    D++   S+I GL  +    EA + F  ML +
Sbjct: 340 ALIDMHAKCGNMEKAVKLFQDMPSR----DLIPCCSLIQGLSIHGRGVEAVELFNRMLDE 395

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGC-AIVMGVEGDLHVRSALVDMYAKCGFISE 403
           G  P +   + IL AC+    +  G            V    +  + +VD+ ++ G +  
Sbjct: 396 GLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRA 455

Query: 404 ARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           A  L   M  + +   W +++  C  HG  +   E+ N++ E
Sbjct: 456 AYDLLKSMPLKPHACAWGALLGACKLHGDVELREEVANRLLE 497


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 174/513 (33%), Positives = 261/513 (50%), Gaps = 69/513 (13%)

Query: 119 LITFYTECQNIHHARMLFD-----EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           L++ Y     +  A+ LF      ++P   +  W  +     + G   EA+ V ++M  +
Sbjct: 204 LLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVAR 263

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMYSKCGSVEK 232
           G++ +     S L AC  L  +  G ++H+ VLK +    ++FV S+L+DMY+    V  
Sbjct: 264 GVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGA 323

Query: 233 AKKVFDEMV---EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
           A+ VFD MV   E+ +   NAM+ GY Q GL  +AL L   + T   +  VV   T I+G
Sbjct: 324 ARLVFD-MVPAGERQLGLWNAMICGYAQAGLDEDALELFARMET---EAGVVPSETTIAG 379

Query: 290 FSKS----------------------GDQVMVSKLFQLMRAK------------GVEP-D 314
              S                       D   V      + A+             +EP D
Sbjct: 380 VLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRD 439

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQG------------------FCPTSATISSI 356
           VVSW ++I+G V      +AF   +EM  QG                    P + T+ ++
Sbjct: 440 VVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTL 499

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           LP CA  A   RGKEIHG A+   ++ D+ V SALVDMYAKCG ++ +R +FD++  RN 
Sbjct: 500 LPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNV 559

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474
           +TWN +I     HG  DEAI LF++M   +  K + ++F A L AC H G+V+ G  +F 
Sbjct: 560 ITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFR 619

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-EPDLFVWGALLGACKNHGN 533
            M+  + + P  + +AC VD+LGRAGRL EAY +I +M   E  +  W + LGAC+ H N
Sbjct: 620 SMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRN 679

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + L EIAA+ L ELEP+ A++ +LL ++Y+ AG
Sbjct: 680 VALGEIAAERLFELEPDEASHYVLLCNIYSAAG 712



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 196/421 (46%), Gaps = 52/421 (12%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGL--ARLTQIATKLITFYTECQNIHH 131
           F L PAA S         R+L + + +H   +   L       ++  L+T Y  C ++  
Sbjct: 58  FALPPAAKSAAAL-----RSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTA 112

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A  LFD +P  +   + +L  A         A+    +M ++G     F + SVL AC H
Sbjct: 113 ALALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSH 172

Query: 192 LS-DIGTGEKIHSLVLKHSF--GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD---- 244
           L+ D+  G + H+  LK+ F  G + F  ++L+ MY++ G V+ A+ +F  +   D    
Sbjct: 173 LAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGG 232

Query: 245 -IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK----------- 292
            +V  N MVS  VQ G   EA+ ++ ++    V+P+ VT+ + +   S+           
Sbjct: 233 GVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMH 292

Query: 293 ------------------------SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
                                   S ++V  ++L   M   G E  +  W ++I G    
Sbjct: 293 AYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAG-ERQLGLWNAMICGYAQA 351

Query: 329 FCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
             +++A + F  M ++ G  P+  TI+ +LP+CA +      + +HG  +  G+  +  V
Sbjct: 352 GLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFV 411

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
           ++AL+D+YA+ G +  AR +F  +  R+ V+WN++I GC   G+  +A +L  +M+++ +
Sbjct: 412 QNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGR 471

Query: 448 L 448
            
Sbjct: 472 F 472



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 171/402 (42%), Gaps = 50/402 (12%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSF--GTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           F +P   K+   L  +     IH   L+H    G    V ++L+  Y++CG +  A  +F
Sbjct: 58  FALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALF 117

Query: 238 DEMVEKDIVAMNAMVSGY--VQRGL-ATEALNLVEEIGTPRVKPNVVT------------ 282
           D M  +D V  N++++     +R L A +AL  +   G P     +V+            
Sbjct: 118 DAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDL 177

Query: 283 -----------------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSW 318
                                  +N L+S +++ G       LF  + A  V    VV+W
Sbjct: 178 RLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTW 237

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378
            +++S LV +    EA +   +M+++G  P   T +S LPAC+    +  G+E+H   + 
Sbjct: 238 NTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLK 297

Query: 379 -MGVEGDLHVRSALVDMYAKCGFISEARTLFDKM--SERNTVTWNSMIFGCANHGYCDEA 435
              +  +  V SALVDMYA    +  AR +FD +   ER    WN+MI G A  G  ++A
Sbjct: 298 DADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDA 357

Query: 436 IELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           +ELF +ME    +     +   VL +C        G+   +    K  +         ++
Sbjct: 358 LELFARMETEAGVVPSETTIAGVLPSCARSETFA-GKEAVHGYVVKRGMADNPFVQNALM 416

Query: 494 DLLGRAGRLAEAYEMIKTMSTEP-DLFVWGALLGACKNHGNI 534
           DL  R G +  A  +  T+  EP D+  W  L+  C   G+I
Sbjct: 417 DLYARLGDMDAARWIFATI--EPRDVVSWNTLITGCVVQGHI 456



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 141/286 (49%), Gaps = 21/286 (7%)

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
           P     N L++ +++ GD      LF  M ++    D V++ S+I+ L        A D 
Sbjct: 92  PTPAVSNALLTAYARCGDLTAALALFDAMPSR----DAVTFNSLIAALCLFRRWLPALDA 147

Query: 338 FKEMLSQGFCPTSATISSILPACAS-AANMRRGKEIHGCAIVMG-VEGDLHVR-SALVDM 394
            ++ML +G   TS T+ S+L AC+  A ++R G+E H  A+  G ++GD     +AL+ M
Sbjct: 148 LRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSM 207

Query: 395 YAKCGFISEARTLFDKMSERN-----TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           YA+ G + +A+TLF  +   +      VTWN+M+      G C EAIE+   M  R  + 
Sbjct: 208 YARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRP 267

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA--- 505
           D ++F + L AC  + ++ LG+ +   + +   +   +   + +VD+     R+  A   
Sbjct: 268 DGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLV 327

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           ++M+   + E  L +W A++      G   L E A +  + +E E+
Sbjct: 328 FDMVP--AGERQLGLWNAMICGYAQAG---LDEDALELFARMETEA 368



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 70/294 (23%)

Query: 43  SCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHA 102
           SC++S + AGK  ++G                             Y+  R          
Sbjct: 383 SCARSETFAGKEAVHG-----------------------------YVVKR---------- 403

Query: 103 QLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQE 162
                G+A    +   L+  Y    ++  AR +F  I   ++  W  L      +G+ ++
Sbjct: 404 -----GMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRD 458

Query: 163 AVTVFHEMHIQG------------------LKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
           A  +  EM  QG                  +  N   + ++L  C  L+    G++IH  
Sbjct: 459 AFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGY 518

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
            ++H+  +D  V S+L+DMY+KCG +  ++ VFD +  ++++  N ++  Y   GL  EA
Sbjct: 519 AVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIMAYGMHGLGDEA 578

Query: 265 LNLVEE-IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA----KGVEP 313
           + L +  + +   KPN VT+   ++  S SG   MV +  ++ R+     GVEP
Sbjct: 579 IALFDRMVASDEAKPNEVTFIAALAACSHSG---MVDRGLEMFRSMKRNHGVEP 629



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 31/283 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           GK +H   +   L     + + L+  Y +C  +  +R +FD +P+ N+  W  L  AY  
Sbjct: 512 GKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIMAYGM 571

Query: 157 RGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFGTDA 214
            G   EA+ +F  M      K N     + L AC H   +  G E   S+   H      
Sbjct: 572 HGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGVEPTP 631

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAMNAMVSG-YVQRGLATEALNLVEEI 271
            + +  +D+  + G +++A ++   M   E+ + A ++ +    + R +A      + EI
Sbjct: 632 DLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVA------LGEI 685

Query: 272 GTPR---VKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGV--EPDVVSWTSVISGL 325
              R   ++P+  +   L+   +S +G     S++   MR +GV  EP   SW   + G+
Sbjct: 686 AAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPG-CSWIE-LDGV 743

Query: 326 VHNFCNDEA-----------FDTFKE-MLSQGFCPTSATISSI 356
           +H F   E+            D   E M  QG+ P +  I  +
Sbjct: 744 IHRFMAGESAHPESTLVHAHMDALWERMRDQGYTPDTTLIKPV 786



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 108/261 (41%), Gaps = 53/261 (20%)

Query: 355 SILPACASAANMRR---GKEIHGCAIVMGV-EGDLH-VRSALVDMYAKCGFISEARTLFD 409
           ++ PA  SAA +R     + IHG A+   + +G    V +AL+  YA+CG ++ A  LFD
Sbjct: 59  ALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALFD 118

Query: 410 KMSERNTVTWNSMIFG-CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH------ 462
            M  R+ VT+NS+I   C    +      L + + E   L   +  +VL AC H      
Sbjct: 119 AMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLR 178

Query: 463 --------------------------------VGLVELGQRLFNMMQEKYKIMPRTEHYA 490
                                           +GLV+  Q LF  +            + 
Sbjct: 179 LGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWN 238

Query: 491 CMVDLLGRAGRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIELA-EIAAKHLSE 546
            MV LL ++GR  EA E++  M      PD   + + L AC     + L  E+ A  L  
Sbjct: 239 TMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLK- 297

Query: 547 LEPESAANNML---LTDLYAN 564
            + + AAN+ +   L D+YA+
Sbjct: 298 -DADLAANSFVASALVDMYAS 317


>gi|30103011|gb|AAP21424.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|222626012|gb|EEE60144.1| hypothetical protein OsJ_13038 [Oryza sativa Japonica Group]
 gi|374087691|gb|AEY82646.1| chloroplast ALBL [Oryza sativa Japonica Group]
          Length = 859

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 238/436 (54%), Gaps = 5/436 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           LI+ Y    ++  A  L  ++ ++    ++  W +L   +       EA+  F  M + G
Sbjct: 258 LISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAG 317

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++ N   I   + AC  L  +   +++HS  +K     +    +SL+DMY+KCG +  A 
Sbjct: 318 VEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAW 377

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           ++F  + +KDI + N+M+SGY Q G   +A  L  ++    V+ NV+TWNT+ISG+ ++G
Sbjct: 378 RIFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNG 437

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           D     +LFQ+M + GV+ D  +W  +I+G VHN   D A   F++M +    P   TI 
Sbjct: 438 DDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITIL 497

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           SI+PA  +     + +EIH C     +E D  + +AL++ Y+K G ++ A  +FD  S R
Sbjct: 498 SIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSR 557

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           N ++WN +I     HG  +EA++LF QM++   + DH +   V+ A    G V  G + F
Sbjct: 558 NIISWNCIILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTF 617

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M   Y I P  +HYA MVDLLGR+GRL EAYE+I  M   P+  VW   L A   HGN
Sbjct: 618 FNMANDYNITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGN 677

Query: 534 IELAEIAAKHLSELEP 549
           + LA +AA+ LS ++P
Sbjct: 678 VRLAHLAARELSAIDP 693



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 210/365 (57%), Gaps = 4/365 (1%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           TKLIT ++    +  AR +FD + + ++  W A+ GAYA RG + + + +   M  +G+ 
Sbjct: 86  TKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVL 145

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG---TDAFVVSSLIDMYSKCGSVEKA 233
            + F+I  +L+AC +  D+  G  +HS+ ++  F     D  V +S++ MY+KCG +  A
Sbjct: 146 PDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWA 205

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           +KVFD+MV +D+   N+M+ GY +     EA +L++ +     +P VVTWNTLIS +++ 
Sbjct: 206 RKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARF 265

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD  +  +L   M   GV PDVV+WTS++SG VH   +DEA   F  M   G  P   +I
Sbjct: 266 GDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSI 325

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +  + ACAS   + + KE+H  AI +G   ++   ++LVDMYAKCG I  A  +F  + +
Sbjct: 326 ACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPD 385

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           ++  +WNSMI G A  GYC +A ELF +ME    + + +++  +++     G  E    L
Sbjct: 386 KDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFEL 445

Query: 473 FNMMQ 477
           F MM+
Sbjct: 446 FQMME 450



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 147/345 (42%), Gaps = 10/345 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L   K LH+  I  G          L+  Y +C  I  A  +F  IP  +I  W ++ 
Sbjct: 336 KLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMI 395

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ GY  +A  +F +M   G+++N+    +++       D     ++  ++  H   
Sbjct: 396 SGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVK 455

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMV----EKDIVAMNAMVSGYVQRGLATEALNL 267
            D    + LI      G  ++A ++F +M       D + + +++  +     + +   +
Sbjct: 456 RDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREI 515

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
              I    ++ +    N LI+ +SKSG+      +F +  ++    +++SW  +I   V 
Sbjct: 516 HACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSR----NIISWNCIILAHVL 571

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLH 386
           +   +EA D F +M  +G  P   T+ +++ A      +  G +     A    +  +L 
Sbjct: 572 HGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELD 631

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHG 430
             +A+VD+  + G + EA  L D+M    N+  W++ +     HG
Sbjct: 632 HYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHG 676


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 159/474 (33%), Positives = 260/474 (54%), Gaps = 19/474 (4%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           Q+G +  A+ I   +    +I+   L++ Y +   I  AR LFD      I  W  L G 
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGG 224

Query: 154 YARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           Y R+    +A ++F  M ++  +  NI +        G LS+         L ++     
Sbjct: 225 YVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQN--GLLSE--ARRLFEELPIR----- 275

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F  ++++  + + G +++A ++F+EM EK+ V+ NAM++GYVQ     +A  L +++ 
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMP 335

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
           +     N  +WNT+++G+++ G+      LF  M  +    D +SW ++ISG   +  ++
Sbjct: 336 SR----NTSSWNTMVTGYAQCGNIDQAKILFDEMPQR----DCISWAAMISGYAQSGQSE 387

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F +M   G     + ++  L +CA  A +  GK++HG  +  G +      +AL+
Sbjct: 388 EALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALL 447

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS 452
            MY KCG I EA  +F+ ++E++ V+WN+MI G A HG+  EA+ LF  M+   K D ++
Sbjct: 448 AMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVT 507

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
              VL+AC H G V+ G   FN M + Y I    +HY CM+DLLGRAGRL EA  ++K+M
Sbjct: 508 LVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSM 567

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              PD   WGALLGA + HG+ EL E AA+ + E+EP+++   +LL++LYA +G
Sbjct: 568 PFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASG 621



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 202/447 (45%), Gaps = 69/447 (15%)

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           I  ++I +W     AY R+G  + A++VF+     G+++   V  + +   G+LS+    
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFN-----GMRRRSTVTYNAM-ISGYLSN--NK 106

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
                 V +     D    + ++  Y K G++  A+ +F++M EKD+V+ NAM+SG+ Q 
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-------------- 304
           G   EA  + +++    +  N ++WN L+S + ++G      +LF               
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLM 222

Query: 305 --LMRAKGVEP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
              +R K ++            D +SW  +I+G   N    EA   F+E+  +     +A
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 352 TISSIL------PACASAANMRRGKEIHGCAIVMGVEGDLHVRSA--------------- 390
            +S  +       A      M    E+   A++ G      +  A               
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW 342

Query: 391 --LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK- 447
             +V  YA+CG I +A+ LFD+M +R+ ++W +MI G A  G  +EA+ LF +M+     
Sbjct: 343 NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGI 402

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEA 505
           L+  +    L++C  +  +ELG++L   +    K   +T + A   ++ + G+ G + EA
Sbjct: 403 LNRSALACALSSCAEIAALELGKQLHGRL---VKAGFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHG 532
           +++ + + TE D+  W  ++     HG
Sbjct: 460 FDVFEDI-TEKDIVSWNTMIAGYARHG 485



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 147/327 (44%), Gaps = 48/327 (14%)

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNL---------------------------VEEIG 272
           +V+ DIV  N  +S Y+++G    AL++                             ++ 
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                 ++++WN ++SG+ K+G+      LF  M     E DVVSW +++SG   N   +
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSAARALFNQM----PEKDVVSWNAMLSGFAQNGFVE 170

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F +ML         + + +L A      +   + +    +    + ++   + L+
Sbjct: 171 EARKIFDQML----VKNEISWNGLLSAYVQNGRIEDARRLFDSKM----DWEIVSWNCLM 222

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS 452
             Y +   + +AR+LFD+M  R+ ++WN MI G A +G   EA  LF ++  R   D  +
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR---DVFA 279

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           +TA+++     G+++   R+F  M EK ++      +  M+    ++ ++ +A E+   M
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIEKARELFDQM 334

Query: 513 STEPDLFVWGALLGACKNHGNIELAEI 539
            +  +   W  ++      GNI+ A+I
Sbjct: 335 PSR-NTSSWNTMVTGYAQCGNIDQAKI 360



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 12/226 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK LH +L+ +G          L+  Y +C +I  A  +F++I + +I  W  +  
Sbjct: 420 ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIA 479

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
            YAR G+ +EA+ +F  M +  +K +   +  VL AC H   +  G E  +S+   +   
Sbjct: 480 GYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGIT 538

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATEALNL 267
            +A   + +ID+  + G +++A  +   M    D     A++      G   L  +A   
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598

Query: 268 VEEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVE 312
           V E+     +P+      L+S  ++ SG    V ++   MR KGV+
Sbjct: 599 VFEM-----EPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVK 639


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 251/470 (53%), Gaps = 14/470 (2%)

Query: 98   KILHAQLIVSGLARLTQIATKLITFYTECQNIHH---ARMLFDEIPKTNIHRWIALTGAY 154
            K+L + L        TQ    +  F T C + +    A     ++ K N+  + AL   +
Sbjct: 794  KLLESALAAMIKTSQTQNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGF 853

Query: 155  ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
                +   ++  +  M    +  + +   S+++A    S  G GE + + + K  FG   
Sbjct: 854  VTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFAS--GFGESLQAHIWKFGFGFHV 911

Query: 215  FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
             + ++LI  YS  G + +A+KVFDEM E+D V    MVS Y Q      A +L  ++   
Sbjct: 912  QIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMP-- 969

Query: 275  RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
              + N  TWN LI G+++ G+  +   LF  M  K    D++SWT++I+G   N    EA
Sbjct: 970  --EKNEATWNCLIDGYTRLGNLELAESLFNQMPVK----DIISWTTMINGYSRNKRYREA 1023

Query: 335  FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
               F +M+ +G  P   T+S+++ ACA    +  GKE+H   +  G   D+++ SALVDM
Sbjct: 1024 IAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDM 1083

Query: 395  YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSF 453
            Y+KCG +  A  +F  + ++N   WNS+I G A HG+  EA+++F +ME E  K + ++F
Sbjct: 1084 YSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTF 1143

Query: 454  TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
             +V TAC H GLVE G+R++  M + Y I+   EHY CMV L  +AG + EA E+I +M 
Sbjct: 1144 VSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSME 1203

Query: 514  TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
             EP+  +WGALL  C+ H N+E+AEIA   L  LEP ++    LL  +YA
Sbjct: 1204 FEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMYA 1253


>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 511

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 252/469 (53%), Gaps = 46/469 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K LHA  + +G+     +  +L+       N+ +AR LFD      I  +  L  +Y+  
Sbjct: 5   KQLHAHCLRTGVDETKDLLQRLLLI----PNLVYARKLFDLHRNPCIFLYNKLIQSYSVH 60

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
               E++ +++ +   G++ N      +  A    S       +HS   +  F +D+F  
Sbjct: 61  HQPHESIVLYNLLSFDGIRPNHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCC 120

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++LI  Y+K G++  A++VFDEM  +D                                 
Sbjct: 121 TALITAYAKLGALCCARRVFDEMSNRD--------------------------------- 147

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
             V  WN +I+G+ + GD     +LF  M  K    +V SWT+VISG   N    EA   
Sbjct: 148 --VPVWNAMITGYQRRGDMKAAMELFDSMPNK----NVTSWTTVISGFSQNGNYSEALTM 201

Query: 338 FKEM-LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
           F  M   +   P   T+ S+LPACA+   +  G+ + G A   G   +++VR+A ++MY+
Sbjct: 202 FLCMEKDKSVKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYS 261

Query: 397 KCGFISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFT 454
           KCG I  A+ LFD++ ++RN ++WNSMI   A HG  DEA+EL+ QM +E ++ D ++F 
Sbjct: 262 KCGMIDVAKRLFDEIGNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFV 321

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            +L AC H G+V  G+ L   M+E +KI P+ EHY CM+DLLGR G+L EA ++IKTM  
Sbjct: 322 GLLLACVHGGMVLKGKELLKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDLIKTMPM 381

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           +PD  VWG LLGAC  HGN+E+AEIA++ L +LEP +  N ++++++YA
Sbjct: 382 KPDAVVWGTLLGACSFHGNVEIAEIASEALMKLEPTNPGNCVIMSNIYA 430



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 118/278 (42%), Gaps = 18/278 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           L+ G+ L      +G      +    +  Y++C  I  A+ LFDEI  + N+  W ++ G
Sbjct: 231 LEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIG 290

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
           + A  G H EA+ ++ +M  +G + +      +L AC H   +  G E + S+   H   
Sbjct: 291 SLATHGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKIS 350

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG------LATEA 264
                   +ID+  + G +++A  +   M ++ D V    ++      G      +A+EA
Sbjct: 351 PKLEHYGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEA 410

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ---LMRAKGVEPDVVSWTSV 321
           L  +E    P    N V  + + +   K    + + KL +   + +A G    V +   V
Sbjct: 411 LMKLE----PTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEAGVEV 466

Query: 322 ISGLVHNFCNDEAFDTFK--EMLSQGFCPTSATISSIL 357
               V +  +  +++ ++  + +S+   P  +   S+L
Sbjct: 467 HKFTVEDKSHPRSYEIYQVLDEISRRMKPEKSRFDSML 504


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 160/482 (33%), Positives = 260/482 (53%), Gaps = 63/482 (13%)

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           ++  W  L  +Y  +G  +EA+ V+  +  +G+   + V P VLKAC  LS +  G+ +H
Sbjct: 59  SLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYL-LGVAPLVLKACASLSIVKHGKALH 117

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
           +  +K+    D  + +SL+ MY+KCG+V  ++KVFD M E++ V  NAM+ GY+  G + 
Sbjct: 118 AESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSK 177

Query: 263 EALNLVEEIG-----------------------------TPRVKPNVVTWNTLISGFSKS 293
            A+ L E++                               P    NVVTW  ++ G++++
Sbjct: 178 SAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARN 237

Query: 294 GDQVMVSKLFQLMRAKGVEP---------------------------DVVSWTSVISGLV 326
            +     ++F+ M  +                               ++V+W S+ISG  
Sbjct: 238 AEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYA 297

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
            N  ++EA + F +M ++GF P   TI+S+L AC+    +  GK+IH      G++ +  
Sbjct: 298 QNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQF 357

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-R 445
           V + LVDMYAKCG ++ AR +F+ M+ RN   WNSMI G A HG   EA+E F +ME+  
Sbjct: 358 VLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSH 417

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
           +  D ++F +VL+AC H G V  G  +F+ M EKY +    +HY C++DLLGRAGR+ EA
Sbjct: 418 EGPDEITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEA 476

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL----SELEPESAANNMLLTDL 561
           Y++IK M  +P+  VWGALLGAC+ H ++E+A+   + +    S +     ++ +LL+++
Sbjct: 477 YDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNI 536

Query: 562 YA 563
           YA
Sbjct: 537 YA 538



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 137/277 (49%), Gaps = 9/277 (3%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTN 143
           ++ Y R+  +++     A+ +  G+ +    A + +I+ Y +  N+  AR +FD IP  N
Sbjct: 231 VDGYARNAEMEA-----AREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRN 285

Query: 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
           +  W +L   YA+ G+ +EA+  F +M  +G + +   I SVL AC  L  +  G+KIH 
Sbjct: 286 LVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHH 345

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
           ++       + FV++ L+DMY+KCG +  A+ +F+ M  ++    N+M+SG+   G + E
Sbjct: 346 MMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKE 405

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
           AL     +      P+ +T+ +++S  +  G      ++F  M   G+   +  +  +I 
Sbjct: 406 ALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLID 465

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            L       EA+D  K M  +   P      ++L AC
Sbjct: 466 LLGRAGRIKEAYDLIKRMPVK---PNDVVWGALLGAC 499


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 172/545 (31%), Positives = 275/545 (50%), Gaps = 44/545 (8%)

Query: 60  FIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKL 119
            + A +   + S +F L  A  S  +      R    G  L +  + SGLA     A+ L
Sbjct: 80  LLRAMHAQGLASNTFALGSALRSAAVA-----RRPAIGAQLQSLALKSGLANNVFAASAL 134

Query: 120 ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
           +  Y +C  +  AR +FD +P+ N   W AL   Y   G    A+ +F EM  +GL  + 
Sbjct: 135 LDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDE 194

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
               S+L A    S      ++H  ++K+       V+++ I  YS+CGS++ ++++FD 
Sbjct: 195 ATFASLLTAVEGPSCF-LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDG 253

Query: 240 MVE-KDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           + + +D+++ NAM+  Y   G+  EA+   V  +    V P++ ++ ++IS  S+ G   
Sbjct: 254 IGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDD 313

Query: 298 MVSKLFQLMRAK----GVEP-------------------------------DVVSWTSVI 322
              ++   +  K    GV P                               D VSW S++
Sbjct: 314 HQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSML 373

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
           +G   +  + +A   F+ M S+         S+ L + +  A ++ GK+IHG  I  G  
Sbjct: 374 TGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFA 433

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            +  V S+L+ MY+K G I +AR  F++  + ++V WN+MIFG A HG  +    LFN+M
Sbjct: 434 SNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEM 493

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
            +RK  LDH++F  ++T+C H GLV+ G  + N M+ KY +  R EHYAC VDL GRAG+
Sbjct: 494 LQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQ 553

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L +A ++I +M  EPD  VW  LLGAC+ HGN+ELA   A HL   EP   +  +LL+ +
Sbjct: 554 LDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSM 613

Query: 562 YANAG 566
           Y+  G
Sbjct: 614 YSGLG 618



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 229/484 (47%), Gaps = 54/484 (11%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTEC--QNIHHARMLFDEIPKTNIHRWIALTGAYARRG 158
           HA L+ SG A  T    +L+T Y+      +  AR +FDE+P+ +   W AL  A+A  G
Sbjct: 14  HASLLKSGFAAPTPW-NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASG 72

Query: 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
            H EA  +   MH QGL  N F + S L++         G ++ SL LK     + F  S
Sbjct: 73  AHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAAS 132

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           +L+D+Y+KCG V  A++VFD M E++ V+ NA+++GY + G    AL L  E+    + P
Sbjct: 133 ALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVP 192

Query: 279 NVVTW----------------------------------NTLISGFSKSGDQVMVSKLFQ 304
           +  T+                                  N  I+ +S+ G      ++F 
Sbjct: 193 DEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFD 252

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACAS- 362
            +   G   D++SW +++    HN  +DEA   F  M+ + G  P   + +SI+ +C+  
Sbjct: 253 GI---GDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEH 309

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG---FISEARTLFDKMSERNTVTW 419
             +  +G+ IHG  I   +EG   V +AL+ MY +      + +A   F+ +  ++TV+W
Sbjct: 310 GHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSW 369

Query: 420 NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSM+ G + HG   +A++ F  M  E  + D  +F+A L +   + +++LG+++  ++  
Sbjct: 370 NSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIH 429

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
                      + ++ +  ++G + +A   +E     S+ P    W A++     HG  E
Sbjct: 430 S-GFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVP----WNAMIFGYAQHGQAE 484

Query: 536 LAEI 539
             +I
Sbjct: 485 NVDI 488


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 172/517 (33%), Positives = 269/517 (52%), Gaps = 61/517 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++L  G+ LH  +I  G  +   +  KL+TFY+    +  A ++ +     +   W  L 
Sbjct: 114 KSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLI 173

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            +Y R G+ Q+A++ + +M  +G++ + F  PSVLKACG   D+G G+++H         
Sbjct: 174 SSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHE-------- 225

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNL 267
                 S    +Y+  G   +A ++F  M    +E +I+  N +  GY++ G    AL L
Sbjct: 226 ------SINASLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALEL 279

Query: 268 VEE----------------------IGTPRVKPNVVTW-------------NTLISGFSK 292
           + +                      IG  ++   + ++             N LI+ +S+
Sbjct: 280 LSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSR 339

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
             D      LFQLM AK     +++W S+ISG  H   ++EA    +EML  G  P   T
Sbjct: 340 CKDLKHAYLLFQLMEAK----SLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVT 395

Query: 353 ISSILPACASAANMRRGKEIHGCAIVM--GVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           I+S+LP CA  AN++ GKE H C +      +  L + +ALVDMYA+ G + EAR +FD 
Sbjct: 396 IASVLPLCARVANLQHGKEFH-CYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDM 454

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELG 469
           + ER+ +T+ SMI G    G    A++LF +M   + K DH++  AVL+AC H GLV  G
Sbjct: 455 LGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQG 514

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529
           Q LF  M+  Y + P  EH+ACM DL GRAG L +A E+I+ M  +P   +W  L+GAC+
Sbjct: 515 QLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACR 574

Query: 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            H N E+ E AA+ L E++PE+    +L+ ++YA AG
Sbjct: 575 IHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAG 611



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 173/406 (42%), Gaps = 26/406 (6%)

Query: 126 CQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH--EMHIQGLKQNIFVIP 183
           C  +  A+  F  +  + I   +     +  RG   +A        +H     Q++ V P
Sbjct: 43  CNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHP 102

Query: 184 --SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
             S+L +C  +  +  G ++H  ++   F     +V  L+  YS    +  A  + +   
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS--------GFSKS 293
                  N ++S YV+ G   +AL+  +++    ++P+  T+ +++         GF K 
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 222

Query: 294 GDQVMVS-------------KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
             + + +             +LF  M A+ +E +++ W ++  G +       A +   +
Sbjct: 223 VHESINASLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQ 282

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M   G    S  +   L AC+   + + GKEIH  AI         V++AL+ MY++C  
Sbjct: 283 MRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKD 342

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           +  A  LF  M  ++ +TWNS+I GC +    +EA  L  +M     + ++++  +VL  
Sbjct: 343 LKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPL 402

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
           C  V  ++ G+     M  +         +  +VD+  R+G++ EA
Sbjct: 403 CARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEA 448



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 19/185 (10%)

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           ISS+L +C    ++  G+++HG  I +G E    +   LV  Y+    + +A  + +  +
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
             +   WN +I     +G+C +A+  + QM ++  + D+ ++ +VL AC     +  G+ 
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 222

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP---DLFVWGALLGAC 528
           +               H +    L    G   EA+E+  +M  E    ++ +W  + G  
Sbjct: 223 V---------------HESINASLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGY 267

Query: 529 KNHGN 533
              GN
Sbjct: 268 LRTGN 272


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 166/512 (32%), Positives = 266/512 (51%), Gaps = 41/512 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L S   L+AQ++V+ L R       +   Y +  ++H A   F+ I   N+H W  + 
Sbjct: 26  KTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTIL 85

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            ++++     + + +F  M  +G   + F +   +KAC  LS     +  HSL +K    
Sbjct: 86  ASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLE 145

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV--------------- 256
            D +V  +L+++Y++ GS+E+A KVF+E+  K+ V    M+ G++               
Sbjct: 146 GDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRM 205

Query: 257 -QRGLATEAL---NLVEEIGTPR------------VKPNVVTWN-----TLISGFSKSGD 295
            + G   +      L++  G               +K N +  N     +L+  + K G 
Sbjct: 206 RRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGF 265

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                KLF+ +  +    DVV W+++I+G   N    E+   F++ML+    P S T +S
Sbjct: 266 LDFALKLFEEISYR----DVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFAS 321

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           I+ AC+S  ++++G+ +HG  I  GVE D+   ++ +DMYAKCG I  A  +F ++ E+N
Sbjct: 322 IVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKN 381

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFN 474
             +W++MI G   HG C EA+ LF +M    +L + ++F +VL+AC H G +E G   F 
Sbjct: 382 VFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFK 441

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            M   Y I P  EHYACMVDLLGRAG++ EA   I  M TEP    WGALLGAC+ H   
Sbjct: 442 SMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRA 501

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           ELAE  AK L  LE + +   ++L+++YA+ G
Sbjct: 502 ELAEEVAKKLLPLESDQSGVYVMLSNIYADVG 533



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 154/344 (44%), Gaps = 8/344 (2%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHA 132
           F L P      I+      A + GK  H   I          + T L+  Y +C  +  A
Sbjct: 210 FELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFA 269

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
             LF+EI   ++  W A+   +AR G   E++++F +M    +  N     S++ AC  L
Sbjct: 270 LKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSL 329

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
             +  G  +H  ++++    D    +S IDMY+KCG +  A +VF ++ EK++ + + M+
Sbjct: 330 GSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMI 389

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD-QVMVSKLFQLMRAKGV 311
           +G+   GL  EALNL  E+ +    PN VT+ +++S  S SG  +   S    + R  G+
Sbjct: 390 NGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGI 449

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
            P    +  ++  L      DEA      M ++   P ++   ++L AC         +E
Sbjct: 450 TPVEEHYACMVDLLGRAGKIDEALSFINNMPTE---PGASAWGALLGACRIHRRAELAEE 506

Query: 372 IHGCAIVMGVEGDLH-VRSALVDMYAKCGFISEARTLFDKMSER 414
           +     ++ +E D   V   L ++YA  G     +    KM E+
Sbjct: 507 V--AKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEK 548


>gi|108711657|gb|ABF99452.1| Calreticulin family protein, expressed [Oryza sativa Japonica
           Group]
          Length = 1111

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 238/436 (54%), Gaps = 5/436 (1%)

Query: 119 LITFYTECQNIHHARMLFDEIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           LI+ Y    ++  A  L  ++ ++    ++  W +L   +       EA+  F  M + G
Sbjct: 258 LISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAG 317

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++ N   I   + AC  L  +   +++HS  +K     +    +SL+DMY+KCG +  A 
Sbjct: 318 VEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAW 377

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           ++F  + +KDI + N+M+SGY Q G   +A  L  ++    V+ NV+TWNT+ISG+ ++G
Sbjct: 378 RIFSGIPDKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNG 437

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
           D     +LFQ+M + GV+ D  +W  +I+G VHN   D A   F++M +    P   TI 
Sbjct: 438 DDERAFELFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITIL 497

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           SI+PA  +     + +EIH C     +E D  + +AL++ Y+K G ++ A  +FD  S R
Sbjct: 498 SIIPAFTNLVASWKVREIHACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSR 557

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           N ++WN +I     HG  +EA++LF QM++   + DH +   V+ A    G V  G + F
Sbjct: 558 NIISWNCIILAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTF 617

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M   Y I P  +HYA MVDLLGR+GRL EAYE+I  M   P+  VW   L A   HGN
Sbjct: 618 FNMANDYNITPELDHYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHGN 677

Query: 534 IELAEIAAKHLSELEP 549
           + LA +AA+ LS ++P
Sbjct: 678 VRLAHLAARELSAIDP 693



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 210/365 (57%), Gaps = 4/365 (1%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           TKLIT ++    +  AR +FD + + ++  W A+ GAYA RG + + + +   M  +G+ 
Sbjct: 86  TKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTMVEEGVL 145

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG---TDAFVVSSLIDMYSKCGSVEKA 233
            + F+I  +L+AC +  D+  G  +HS+ ++  F     D  V +S++ MY+KCG +  A
Sbjct: 146 PDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWA 205

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           +KVFD+MV +D+   N+M+ GY +     EA +L++ +     +P VVTWNTLIS +++ 
Sbjct: 206 RKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARF 265

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD  +  +L   M   GV PDVV+WTS++SG VH   +DEA   F  M   G  P   +I
Sbjct: 266 GDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSI 325

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +  + ACAS   + + KE+H  AI +G   ++   ++LVDMYAKCG I  A  +F  + +
Sbjct: 326 ACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPD 385

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           ++  +WNSMI G A  GYC +A ELF +ME    + + +++  +++     G  E    L
Sbjct: 386 KDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFEL 445

Query: 473 FNMMQ 477
           F MM+
Sbjct: 446 FQMME 450



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 147/345 (42%), Gaps = 10/345 (2%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + L   K LH+  I  G          L+  Y +C  I  A  +F  IP  +I  W ++ 
Sbjct: 336 KLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMI 395

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA+ GY  +A  +F +M   G+++N+    +++       D     ++  ++  H   
Sbjct: 396 SGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVK 455

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMV----EKDIVAMNAMVSGYVQRGLATEALNL 267
            D    + LI      G  ++A ++F +M       D + + +++  +     + +   +
Sbjct: 456 RDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREI 515

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
              I    ++ +    N LI+ +SKSG+      +F +  ++    +++SW  +I   V 
Sbjct: 516 HACIFHHNLELDGKIANALINAYSKSGNLASACAVFDMHSSR----NIISWNCIILAHVL 571

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLH 386
           +   +EA D F +M  +G  P   T+ +++ A      +  G +     A    +  +L 
Sbjct: 572 HGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELD 631

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHG 430
             +A+VD+  + G + EA  L D+M    N+  W++ +     HG
Sbjct: 632 HYAAMVDLLGRSGRLKEAYELIDEMPLIPNSTVWDTFLTAAVMHG 676


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 166/513 (32%), Positives = 262/513 (51%), Gaps = 51/513 (9%)

Query: 104 LIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQ 161
           ++++GL      +++LI F   +E +++ +   +       N   W      +      +
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60

Query: 162 EAVTVFHE-MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
           EAV ++   +   G K + +  P + KAC  LS I  G +I   VL   F +D FV +++
Sbjct: 61  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           I +   CG ++ A+K+FD+   +D+V+ N+M++GYV+RG A EALN   E+    +KP+ 
Sbjct: 121 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 180

Query: 281 VTW-----------------------------------NTLISGFSKSGDQVMVSKLFQL 305
           VT                                    N L+  + K G+     KLF  
Sbjct: 181 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 240

Query: 306 MRAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           M  K +            + DVV W ++I G VH     EA   F EM +    P   T+
Sbjct: 241 MTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 300

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S L AC+    +  G  IH       +  ++ + +AL+DMYAKCG I++A  +F ++  
Sbjct: 301 VSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPG 360

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRL 472
           RN++TW ++I G A HG    AI  F++M +   + D ++F  +L+ACCH GLVE G++ 
Sbjct: 361 RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKY 420

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ M  K+ + P+ +HY+CMVDLLGRAG L EA E+IK+M  E D  VWGAL  AC+ HG
Sbjct: 421 FSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHG 480

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           N+ + E AA  L +++P  +   +LL ++Y  A
Sbjct: 481 NVLMGERAASKLLQMDPHDSGIYVLLANMYGEA 513



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 145/338 (42%), Gaps = 21/338 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHAR----------------MLFD 137
           L  G+  H  +  +GL     +A  L+  Y +C N+  AR                MLFD
Sbjct: 196 LDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFD 255

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
           E+P  ++  W A+ G Y      +EA+ +F+EM    +  +   + S L AC  L  +  
Sbjct: 256 EMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDV 315

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G  IH  + KH    +  + ++LIDMY+KCG + KA +VF E+  ++ +   A++SG   
Sbjct: 316 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLAL 375

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVV 316
            G A  A+    E+    V P+ VT+  L+S     G      K F  M +K  + P + 
Sbjct: 376 HGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLK 435

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
            ++ ++  L      +EA +  K M  +     +    ++  AC    N+  G+      
Sbjct: 436 HYSCMVDLLGRAGLLEEAEELIKSMPIEA---DAVVWGALFFACRIHGNVLMGERAASKL 492

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           + M    D  +   L +MY +     EA      M +R
Sbjct: 493 LQMDPH-DSGIYVLLANMYGEAEMWKEAGKXRKLMRQR 529



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 2/161 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G  +H  +    L+    + T LI  Y +C  I  A  +F E+P  N   W A+  
Sbjct: 312 ALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIIS 371

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS-LVLKHSFG 211
             A  G    A+  F EM    +  +      +L AC H   +  G K  S +  K +  
Sbjct: 372 GLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS 431

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAM 251
                 S ++D+  + G +E+A+++   M +E D V   A+
Sbjct: 432 PKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 472


>gi|147834109|emb|CAN62187.1| hypothetical protein VITISV_003709 [Vitis vinifera]
          Length = 560

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 174/504 (34%), Positives = 269/504 (53%), Gaps = 32/504 (6%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++L   K LHA +I + L+     AT+++ FY    ++  AR LFD     +++ W ++ 
Sbjct: 23  QSLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSHRSVYLWNSVI 82

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYA      +A+ +F +M    +K + F    VL+AC    D      +H  V+    G
Sbjct: 83  RAYAGEHQFDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRVVHGGVVVSGLG 142

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D+   S+L+  YSK   V++A +VF  M E+D+V  NAM +GY   G   + L L   +
Sbjct: 143 FDSVCGSALVTAYSKLCMVDEASRVFYGMAEQDLVLWNAMAAGYGYCGFWDKGLQLFSAM 202

Query: 272 GTPRVKPNVVTWNTLISGFSK--------------------------SGDQVMVSKLFQL 305
            +   +P+  T   LISG +                           S    M S+   L
Sbjct: 203 RSMGEQPDSYTMVGLISGLADPNLLGIGKGIHGFCLKSSFDCNAHVGSALVSMYSRCHCL 262

Query: 306 MRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             A GV     +PD+V+W+++I+GL  +   ++A   F++M  +G       I S+L A 
Sbjct: 263 NSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFRKMNMEGKRVDPILIXSVLAAS 322

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
             +A +  G EIHG  +  G+E ++ + SAL+DMY+KCGF++    +FD M  RNTV++N
Sbjct: 323 GQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSKCGFVNLGVRVFDSMPNRNTVSYN 382

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           SMI G   HG   +A ++F ++ E+  K D  +F+A+L  CCH GLV  G+ +F+ M E+
Sbjct: 383 SMILGLGIHGLAXQAFKMFEEVLEKGFKPDESTFSALLCTCCHAGLVNDGREIFSRMTEE 442

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           + I  RTEHY  MV LLG AG L EAY++I ++    D  +WGALL  C  HGN ELA I
Sbjct: 443 FHIQARTEHYVHMVKLLGMAGELQEAYDLILSLQQPADSGIWGALLSCCNFHGNSELAXI 502

Query: 540 AAKHLSELEPESAANNMLLTDLYA 563
            A+ L E +PE +A  ++L+++YA
Sbjct: 503 VAQQLFENKPEKSAYRVMLSNIYA 526


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 161/507 (31%), Positives = 264/507 (52%), Gaps = 51/507 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYARRG 158
           +H Q  +  + +   + ++ I+     ++  ++ ++F  I P  N + +  +  A     
Sbjct: 40  IHTQFTIHSIHKPNHLLSQSISL----KDFTYSTLIFSHITPHPNDYAFNIMLRA-TTTT 94

Query: 159 YHQEAVTV--FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           +H   +T+  +H+M    +  N F  P V  AC +L +I      H  V K     D   
Sbjct: 95  WHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHT 154

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVEEIG 272
           V+S++ MY +CG    A+KVFDE+ EKD+V+ N+++SGY + G A EA+     L EE G
Sbjct: 155 VNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESG 214

Query: 273 -TPR-------------------------------VKPNVVTWNTLISGFSKSGDQVMVS 300
             P                                +K N    + LIS +SK G+ V   
Sbjct: 215 FEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSR 274

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           ++F  M ++    D ++W + IS    N   DEA   F  M   G  P   T++++L AC
Sbjct: 275 RIFDGMPSR----DFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           AS   +  GK++   A   G++ D+ V +AL+DMYAKCG +  A+ +F+ M  +N  +WN
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWN 390

Query: 421 SMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           +MI   A+HG   EA+ LF +M +     + + ++F ++L+AC H GLV+ G RLF+MM 
Sbjct: 391 AMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMS 450

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + ++P+ EHY+CMVDLL RAG L EA+++I+ M  +PD    GAL  AC+   N+++ 
Sbjct: 451 TLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIG 510

Query: 538 EIAAKHLSELEPESAANNMLLTDLYAN 564
           E   + L EL+P ++ N ++ + +Y N
Sbjct: 511 ERVIQMLLELDPSNSGNYIISSKIYEN 537



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 185/420 (44%), Gaps = 68/420 (16%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++  ++ H ++   GL         ++T Y  C     AR +FDEI + ++  W +L   
Sbjct: 133 IRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSG 192

Query: 154 YARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YA+ G+ +EAV VF  +  + G + +   + SVL ACG L D+  G  +   V++     
Sbjct: 193 YAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV 252

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           ++++ S+LI MYSKCG +  ++++FD M  +D +  NA +S Y Q G+A EA++L   + 
Sbjct: 253 NSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK 312

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV----------------- 315
              V PN VT   ++S  +  G   +  ++ +    +G++ D+                 
Sbjct: 313 ENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLE 372

Query: 316 --------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC--PTSATISSILPA 359
                          SW ++IS L  +    EA   F+ M  +G    P   T  S+L A
Sbjct: 373 SAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSA 432

Query: 360 CASAANMRRGKEIHG-CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           C  A  +  G  +    + + G+   +   S +VD+ ++ G + EA  + +KM E     
Sbjct: 433 CVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPE----- 487

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
                                       K D+++  A+ +AC     V++G+R+  M+ E
Sbjct: 488 ----------------------------KPDNVTLGALHSACQRKKNVDIGERVIQMLLE 519



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 124/276 (44%), Gaps = 25/276 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +       GL     +AT LI  Y +C ++  A+ +F+++P+ N   W A+  
Sbjct: 335 ALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMIS 394

Query: 153 AYARRGYHQEAVTVFHEMHIQG--LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
           A A  G  +EA+++F  M  +G   + N     S+L AC H   +  G ++  + +   F
Sbjct: 395 ALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDM-MSTLF 453

Query: 211 GTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQR---GLATEA 264
           G    +   S ++D+ S+ G + +A  V ++M EK D V + A+ S   ++    +    
Sbjct: 454 GLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERV 513

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPDVVSWTSVIS 323
           + ++ E+  P    N +  + +    +   D    +++  LMR  GV +    SW  V +
Sbjct: 514 IQMLLEL-DPSNSGNYIISSKIYENLNMWDD---AARMRALMRENGVTKTPGCSWIEVGN 569

Query: 324 GLVHNFCND----EAFDT-------FKEMLSQGFCP 348
            L      D    ++ D        ++E+  +G+ P
Sbjct: 570 QLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYVP 605


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 162/513 (31%), Positives = 276/513 (53%), Gaps = 40/513 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++G+ +HA  I+ GL+    ++  L++ Y++C  +  AR +FD   + +   W +L   
Sbjct: 125 LRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSG 184

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD--IGTGEKIHSLVLKHSFG 211
           Y R G  +E V VF  M   G+  N F + SV+K C    D  +   E +H  V+K    
Sbjct: 185 YVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLD 244

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY------VQRGLATEAL 265
           +D F+VS++IDMY+K G++ +A  +F  + E ++V  N M++G+      + + +A+EAL
Sbjct: 245 SDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEAL 304

Query: 266 NLVEEIGTPRVKPNVVTWNTLI-----SGFSKSGDQV--------------MVSKLFQLM 306
            L  E+ +  ++P   T+++++     +G+ + G Q+              + S L  L 
Sbjct: 305 TLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLY 364

Query: 307 RAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
              G             + D+V+WT+++SG V N  +++A   F E L  G  P   TIS
Sbjct: 365 FNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTIS 424

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++ ACAS A  R G++I   A   G +    + ++ V MYA+ G +  A   F +M   
Sbjct: 425 SVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESH 484

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           + V+W+++I   A HG   +A+  F++M + K + + ++F  VLTAC H GLV+ G R +
Sbjct: 485 DVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYY 544

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M + Y + P  +H  C+VDLLGRAGRLA+A   I       D  +W +LL +C+ H +
Sbjct: 545 ETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRD 604

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +E  ++ A  + ELEP S+A+ ++L ++Y +AG
Sbjct: 605 LERGQLVANRIMELEPTSSASYVILYNMYLDAG 637



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 200/449 (44%), Gaps = 58/449 (12%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           AR L DE+P+ N   +  L  AY+R G    ++         G+  + F   + L AC  
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSR 121

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
              +  G  +H+L +     +  FV +SL+ MYSKCG + +A++VFD   E+D V+ N++
Sbjct: 122 AGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSL 181

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM------------- 298
           VSGYV+ G   E + +   +    +  N     ++I   S  GD  M             
Sbjct: 182 VSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKA 241

Query: 299 --------VSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCN------- 331
                   VS +  +   KG             EP+VV + ++I+G    FC        
Sbjct: 242 GLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAG----FCRTETVIGK 297

Query: 332 ---DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               EA   + E+ S+G  PT  T SS+L AC  A  +  GK+IHG  I    + D  + 
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKK 447
           SAL+D+Y   G + +    F    + + VTW +M+ GC  +   ++A+ LF++ +    K
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLK 417

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQ----EKYKIMPRTEHYACMVDLLGRAGRLA 503
            D  + ++V+ AC  + +   G+++         +++ +M  +      V +  R+G + 
Sbjct: 418 PDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNS-----CVHMYARSGDVD 472

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            A    + M +  D+  W A++     HG
Sbjct: 473 AATRRFQEMESH-DVVSWSAVISCHAQHG 500



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 166/367 (45%), Gaps = 26/367 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H Q+I         I + LI  Y     +      F   PK +I  W A+   
Sbjct: 335 LEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSG 394

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             +   H++A+++FHE    GLK ++F I SV+ AC  L+    GE+I     K  F   
Sbjct: 395 CVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRF 454

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + +S + MY++ G V+ A + F EM   D+V+ +A++S + Q G A +AL+  +E+  
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVIS--GLVHNFC 330
            +V PN +T+  +++  S  G      + ++ M +  G+ P +   T V+   G      
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLA 574

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
           + EAF     + +  F        S+L +C    ++ RG+ +     +M +E        
Sbjct: 575 DAEAF-----ISNSIFHADPVIWRSLLASCRIHRDLERGQLVAN--RIMELEPTSSASYV 627

Query: 391 -LVDMYAKCGFISEARTLFDKMSERNT-----VTW-------NSMIFGCANHGYCDEAIE 437
            L +MY   G +S A    D M +R       ++W       +S + G  +H    E+  
Sbjct: 628 ILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSH---PESSA 684

Query: 438 LFNQMEE 444
           ++ ++EE
Sbjct: 685 IYTKLEE 691


>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 258/464 (55%), Gaps = 42/464 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF-YTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           K +H+QLI +GLA+ T  A++++ F  +   +I++A ++F +I   NI  W  +   ++R
Sbjct: 39  KKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIRGFSR 98

Query: 157 RGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
               Q +++++ +M +   ++      PSV KA   L     G ++H  ++K     D+F
Sbjct: 99  SSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSF 158

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++++ MY  CG   +A+KVFD  ++ DIVA                            
Sbjct: 159 IRNTILFMYVNCGFTSEARKVFDRGMDFDIVA---------------------------- 190

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                  WNT+I G +K G      +LF  M  +    + VSW S+ISG V N    +A 
Sbjct: 191 -------WNTMIMGVAKCGLVDESRRLFDKMSLR----NAVSWNSMISGYVRNGRFFDAL 239

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           + F++M  +   P+  T+ S+L ACA    +R+G+ IH   +    E +  V +A++DMY
Sbjct: 240 ELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMY 299

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           +KCG I +A  +F     R    WNSMI G A +G  +EA++LF+ ++    + D +SF 
Sbjct: 300 SKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFI 359

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVLTAC H G+V+  +  F +M++KYKI P  +H++CMVD+LGRAG L EA E+I++M  
Sbjct: 360 AVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHV 419

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558
           +PD  +WG+LL +C  +GNI++A+ AA HL EL P  +++ +L+
Sbjct: 420 DPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLV 463



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 138/306 (45%), Gaps = 35/306 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYT-------------------------------E 125
           G  LH ++I  GL   + I   ++  Y                                +
Sbjct: 141 GAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAK 200

Query: 126 CQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           C  +  +R LFD++   N   W ++   Y R G   +A+ +F +M ++ ++ + F + S+
Sbjct: 201 CGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSL 260

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L AC  L  I  GE IH  ++K  F  +  VV+++IDMYSKCGS++KA +VF     + +
Sbjct: 261 LNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGL 320

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
              N+M+ G    G   EAL L   + +  ++P+ V++  +++    +G        F L
Sbjct: 321 SCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLL 380

Query: 306 MRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           MR K  ++P +  ++ ++  L      +EA +  + M      P +    S+L +C    
Sbjct: 381 MRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHVD---PDAIIWGSLLWSCCKYG 437

Query: 365 NMRRGK 370
           N++  K
Sbjct: 438 NIKMAK 443


>gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial-like [Cucumis sativus]
          Length = 523

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 161/492 (32%), Positives = 258/492 (52%), Gaps = 45/492 (9%)

Query: 82  SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK 141
           S  ++ YI       G  +HA ++ +G    T I+ KL+  + +C+++  AR  FD +P+
Sbjct: 38  SSALQHYINSDDPSHGLKIHAHILKTGFIPNTNISIKLLILHLKCKSLKFARQAFDALPQ 97

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG----HLSDIGT 197
             +  +  + G Y + G   E++ +  E+   G K + F    +LKA             
Sbjct: 98  KTLSAYNYMIGGYMKMGEVPESLPLVRELICSGEKPDGFTFSMLLKASTLAREDFVPRSL 157

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G  +H+ +LK +   D  + ++L+D Y K G V  A+ VFD M++K+++   +M+SGY+ 
Sbjct: 158 GRVVHAQILKSNVSPDDVLYTALVDSYIKNGDVYIARLVFDLMLKKNVICSTSMISGYMN 217

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
           RGL  +A    EEI    V+ ++V +N +I G+SK+ +    S  F +            
Sbjct: 218 RGLVKDA----EEIFRKTVEKDIVVFNAMIEGYSKTHEHAKKSLEFYI------------ 261

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
                                 +M    F P  +T SS++ AC+  A    G++I    +
Sbjct: 262 ----------------------DMQRLCFSPNISTFSSVIGACSVLAAFEAGQQIQCQLM 299

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
                 D+ + SAL+DMY+KCG   +AR +FD+M ERN  +W SMI G   +GY  EA+E
Sbjct: 300 KTKFFTDIRMGSALIDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALE 359

Query: 438 LFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
           LF  M+E+ ++  + ++F + L+AC H GLVE G  +F  M+  Y + P+ EHYACMVDL
Sbjct: 360 LFCIMQEKHQIQPNFVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDL 419

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           LGRAG L +A+E +  M   P+  VW ALL + K HGN+E+A +AA  L +L  +S    
Sbjct: 420 LGRAGSLLQAWEFVMQMPETPNSDVWAALLSSAKLHGNVEIACMAADELFKLNADSRPGA 479

Query: 556 ML-LTDLYANAG 566
            + L++ +A AG
Sbjct: 480 YVALSNTFAEAG 491



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           TS ++SS L    ++ +   G +IH   +  G   + ++   L+ ++ KC  +  AR  F
Sbjct: 33  TSTSLSSALQHYINSDDPSHGLKIHAHILKTGFIPNTNISIKLLILHLKCKSLKFARQAF 92

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
           D + ++    +N MI G    G   E++ L  ++    +K D  +F+ +L A
Sbjct: 93  DALPQKTLSAYNYMIGGYMKMGEVPESLPLVRELICSGEKPDGFTFSMLLKA 144


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 246/471 (52%), Gaps = 58/471 (12%)

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLS 193
           +F+ +P    + W  L   Y+ +    E V++   M   GL + + +  P V+K C +  
Sbjct: 65  VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124

Query: 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS 253
            +  G  +H LVL+  F  D  V +S +D Y KC  +  A+KVF EM E++ V+  A+V 
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184

Query: 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM------- 306
            YV+ G   EA ++ + +     + N+ +WN L+ G  KSGD V   KLF  M       
Sbjct: 185 AYVKSGELEEAKSMFDLMP----ERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIIS 240

Query: 307 ----------------------RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
                                  A+GV  DV +W+++I G   N   +EAF  F EM ++
Sbjct: 241 YTSMIDGYAKGGDMVSARDLFEEARGV--DVRAWSALILGYAQNGQPNEAFKVFSEMCAK 298

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGC-AIVMGVEGDLHVR----------SALVD 393
              P    +  ++ AC+            GC  +   V+  LH R           AL+D
Sbjct: 299 NVKPDEFIMVGLMSACSQM----------GCFELCEKVDSYLHQRMNKFSSHYVVPALID 348

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLS 452
           M AKCG +  A  LF++M +R+ V++ SM+ G A HG   EAI LF +M +E    D ++
Sbjct: 349 MNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVA 408

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           FT +L  C    LVE G R F +M++KY I+   +HY+C+V+LL R G+L EAYE+IK+M
Sbjct: 409 FTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSM 468

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
             E     WG+LLG C  HGN E+AE+ A+HL ELEP+SA + +LL+++YA
Sbjct: 469 PFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYA 519



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 165/377 (43%), Gaps = 54/377 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++ G  +H  ++  G  +   + T  + FY +C+++  AR +F E+P+ N   W AL  A
Sbjct: 126 VRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVA 185

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y + G  +EA ++F  M  + L     ++  ++K+     D+   +K+   + K     D
Sbjct: 186 YVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKS----GDLVNAKKLFDEMPKR----D 237

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               +S+ID Y+K G +  A+ +F+E    D+ A +A++ GY Q G   EA  +  E+  
Sbjct: 238 IISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCA 297

Query: 274 PRVKPNVVTWNTLISGFS------------------------------------KSGDQV 297
             VKP+      L+S  S                                    K G   
Sbjct: 298 KNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMD 357

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             +KLF+ M  +    D+VS+ S++ G+  + C  EA   F++M+ +G  P     + IL
Sbjct: 358 RAAKLFEEMPQR----DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVIL 413

Query: 358 PACASAANMRRGK---EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-E 413
             C  +  +  G    E+      +    D +  S +V++ ++ G + EA  L   M  E
Sbjct: 414 KVCGQSRLVEEGLRYFELMRKKYSILASPDHY--SCIVNLLSRTGKLKEAYELIKSMPFE 471

Query: 414 RNTVTWNSMIFGCANHG 430
            +   W S++ GC+ HG
Sbjct: 472 AHASAWGSLLGGCSLHG 488


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 167/514 (32%), Positives = 268/514 (52%), Gaps = 45/514 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++G+ +HA    +GL     ++T LI  Y  C     AR +F ++P  ++  W A+   
Sbjct: 116 LRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAG 175

Query: 154 YARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YA  G +  A+    +M   G L+ N   + S+L        +  G  IH+  L+     
Sbjct: 176 YANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQ 235

Query: 213 D---AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           +     + ++L+DMY+KC  +  A +VF  M  ++ V  +A++ G+V     TEA NL +
Sbjct: 236 NEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFK 295

Query: 270 E------------------------------------IGTPRVKPNVVTWNTLISGFSKS 293
           +                                    I    +  ++   N+L+S ++K+
Sbjct: 296 DMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKA 355

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G     +  F  +  K    D +S+ +++SG V N   +EAF  FK+M +    P  AT+
Sbjct: 356 GLINEATMFFDEIAVK----DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATM 411

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
            S++PAC+  A ++ GK  HG  I+ G+  +  + ++L+DMYAKCG I  +R +FDKM  
Sbjct: 412 VSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPA 471

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           R+ V+WN+MI G   HG   EA  LF  M+ +    D ++F  ++ AC H GLV  G+  
Sbjct: 472 RDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHW 531

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ M  KY I+PR EHY CMVDLL R G L EAY+ I++M  + D+ VWGALLGAC+ H 
Sbjct: 532 FDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHK 591

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           NI+L +  ++ + +L PE   N +LL+++++ AG
Sbjct: 592 NIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAG 625



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 216/441 (48%), Gaps = 45/441 (10%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           AR +FD IP  +   + AL  AY+  G    A+ ++  M    +  N +  P VLKAC  
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSA 112

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
           L D+  G  IH+        TD FV ++LID+Y +C     A+ VF +M  +D+VA NAM
Sbjct: 113 LVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAM 172

Query: 252 VSGYVQRGLATEAL-NLVEEIGTPRVKPNVVTWNTLISGFSKSG---------------- 294
           ++GY   G+   A+ +L++      ++PN  T  +L+   ++ G                
Sbjct: 173 LAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRAC 232

Query: 295 -----DQVMVSKLFQLMRAK--------------GVEPDVVSWTSVISGLVHNFCN--DE 333
                +QV++      M AK               V  D V+W+++I G V   C+   E
Sbjct: 233 LEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSALIGGFV--LCDRMTE 289

Query: 334 AFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           AF+ FK+ML +G C  SAT ++S L  CAS A++  G ++H      G+  DL   ++L+
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLL 349

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHL 451
            MYAK G I+EA   FD+++ ++T+++ +++ GC  +G  +EA  +F +M+    + D  
Sbjct: 350 SMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +  +++ AC H+  ++ G+     +  +  +   T     ++D+  + G++  + ++   
Sbjct: 410 TMVSLIPACSHLAALQHGKCSHGSVIIR-GLALETSICNSLIDMYAKCGKIDLSRQVFDK 468

Query: 512 MSTEPDLFVWGALLGACKNHG 532
           M    D+  W  ++     HG
Sbjct: 469 MPAR-DVVSWNTMIAGYGIHG 488



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 17/253 (6%)

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
           W   +      G   +  ++F  + A    PD  ++ ++I           A D ++ ML
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPA----PDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
                P   T   +L AC++  ++R G+ IH  A   G+  DL V +AL+D+Y +C    
Sbjct: 93  RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFG 152

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTAC 460
            AR +F KM  R+ V WN+M+ G ANHG    AI     M++   L  +  +  ++L   
Sbjct: 153 PARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLL 212

Query: 461 CHVGLVELGQRLFN------MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
              G +  G  +        + Q + +++  T     ++D+  +  +L  A  +   M  
Sbjct: 213 AQHGALFQGTSIHAYCLRACLEQNEEQVLIGT----ALLDMYAKCKQLVYACRVFHGMPV 268

Query: 515 EPDLFVWGALLGA 527
             D+  W AL+G 
Sbjct: 269 RNDV-TWSALIGG 280


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 178/505 (35%), Positives = 261/505 (51%), Gaps = 49/505 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG-----AY 154
           LHAQ++  GL R  + A+KLI  Y   + +   R +F            AL       AY
Sbjct: 123 LHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTALLANTLLRAY 182

Query: 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
           A       A+ VF +M ++  +++ F    ++KA    + +      H+ V K     D 
Sbjct: 183 ALNSLPHAALAVFVDMPLR--QRDTFTYSFLIKALA-TAGVTPVRAAHTHVFKLGSVEDT 239

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMV-------------------------------EK 243
           FV ++LID YSK   +  AKKVFDEM                                EK
Sbjct: 240 FVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEK 299

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           D V+ N M+ GY + G A EA  L + +       NVV+W+T++S + K GD  M   +F
Sbjct: 300 DTVSWNTMLDGYAKAGEAEEAFELFQRMP----GRNVVSWSTVVSAYCKKGDMEMARVIF 355

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             M AK    ++V+WT ++S         EA   F EM           + SIL ACA +
Sbjct: 356 DKMPAK----NLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAES 411

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD-KMSERNTVTWNSM 422
             +  GK IH       +     V +AL+DM+ KCG ++ A  +FD ++ E+++V+WN +
Sbjct: 412 GCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNII 471

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G A HG+ ++A+ LF QM+++    D ++   VL+AC H+GLVE G+R F  M+  Y 
Sbjct: 472 IGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYG 531

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  EHY CMVDLLGR G + EA +MIK+M  EP+  +WG+LL AC+ H N+E AE+AA
Sbjct: 532 IKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAA 591

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
             LS L+P +A N  +L+++YA AG
Sbjct: 592 NELSNLQPSNAGNYAVLSNIYAEAG 616


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 160/489 (32%), Positives = 260/489 (53%), Gaps = 43/489 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           Y  ++++  R+R L + K LHA ++  G+ +   +A  L+  Y +C    HA  +FDE+P
Sbjct: 6   YLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMP 65

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGE 199
             +   W ++  A  +     + ++VF  +     L+ + FV  +++KAC +L  I  G 
Sbjct: 66  HRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGR 125

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H   +   +  D  V SSL+DMY+KCG +  AK VFD +                   
Sbjct: 126 QVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSI------------------- 166

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                          RVK N ++W  ++SG++KSG +    +LF+++  K    ++ SWT
Sbjct: 167 ---------------RVK-NTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWT 206

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIV 378
           ++ISG V +    EAF  F EM  +         +SSI+ ACA+ A    G+++HG  I 
Sbjct: 207 ALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIA 266

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           +G +  + + +AL+DMYAKC  +  A+ +F +M  R+ V+W S+I G A HG  ++A+ L
Sbjct: 267 LGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALAL 326

Query: 439 FNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           ++ M     K + ++F  ++ AC HVG VE G+ LF  M + Y I P  +HY C++DLLG
Sbjct: 327 YDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLG 386

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL-SELEPESAANNM 556
           R+G L EA  +I TM   PD   W ALL ACK  G  ++    A HL S  + +  +  +
Sbjct: 387 RSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYI 446

Query: 557 LLTDLYANA 565
           LL+++YA+A
Sbjct: 447 LLSNIYASA 455


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 162/513 (31%), Positives = 276/513 (53%), Gaps = 40/513 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L++G+ +HA  I+ GL+    ++  L++ Y++C  +  AR +FD   + +   W +L   
Sbjct: 125 LRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSG 184

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD--IGTGEKIHSLVLKHSFG 211
           Y R G  +E V VF  M   G+  N F + SV+K C    D  +   E +H  V+K    
Sbjct: 185 YVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLD 244

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY------VQRGLATEAL 265
           +D F+VS++IDMY+K G++ +A  +F  + E ++V  N M++G+      + + +A+EAL
Sbjct: 245 SDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEAL 304

Query: 266 NLVEEIGTPRVKPNVVTWNTLI-----SGFSKSGDQV--------------MVSKLFQLM 306
            L  E+ +  ++P   T+++++     +G+ + G Q+              + S L  L 
Sbjct: 305 TLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLY 364

Query: 307 RAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
              G             + D+V+WT+++SG V N  +++A   F E L  G  P   TIS
Sbjct: 365 FNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTIS 424

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++ ACAS A  R G++I   A   G +    + ++ V MYA+ G +  A   F +M   
Sbjct: 425 SVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESH 484

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLF 473
           + V+W+++I   A HG   +A+  F++M + K + + ++F  VLTAC H GLV+ G R +
Sbjct: 485 DVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYY 544

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M + Y + P  +H  C+VDLLGRAGRLA+A   I       D  +W +LL +C+ H +
Sbjct: 545 ETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRD 604

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +E  ++ A  + ELEP S+A+ ++L ++Y +AG
Sbjct: 605 LERGQLVANRIMELEPTSSASYVILYNMYLDAG 637



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 200/449 (44%), Gaps = 58/449 (12%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           AR L DE+P+ N   +  L  AY+R G    ++         G+  + F   + L AC  
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSR 121

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
              +  G  +H+L +     +  FV +SL+ MYSKCG + +A++VFD   E+D V+ N++
Sbjct: 122 AGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSL 181

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM------------- 298
           VSGYV+ G   E + +   +    +  N     ++I   S  GD  M             
Sbjct: 182 VSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKA 241

Query: 299 --------VSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCN------- 331
                   VS +  +   KG             EP+VV + ++I+G    FC        
Sbjct: 242 GLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAG----FCRTETVIGK 297

Query: 332 ---DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               EA   + E+ S+G  PT  T SS+L AC  A  +  GK+IHG  I    + D  + 
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEERKK 447
           SAL+D+Y   G + +    F    + + VTW +M+ GC  +   ++A+ LF++ +    K
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLK 417

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQ----EKYKIMPRTEHYACMVDLLGRAGRLA 503
            D  + ++V+ AC  + +   G+++         +++ +M  +      V +  R+G + 
Sbjct: 418 PDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNS-----CVHMYARSGDVD 472

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            A    + M +  D+  W A++     HG
Sbjct: 473 AATRRFQEMESH-DVVSWSAVISCHAQHG 500



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 167/368 (45%), Gaps = 28/368 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ GK +H Q+I         I + LI  Y     +      F   PK +I  W A+   
Sbjct: 335 LEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSG 394

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             +   H++A+++FHE    GLK ++F I SV+ AC  L+    GE+I     K  F   
Sbjct: 395 CVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRF 454

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + +S + MY++ G V+ A + F EM   D+V+ +A++S + Q G A +AL+  +E+  
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVIS--GLVHNFC 330
            +V PN +T+  +++  S  G      + ++ M +  G+ P +   T V+   G      
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLA 574

Query: 331 NDEAFDTFKEMLSQGFCPTSATI-SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
           + EAF      +S G       I  S+L +C    ++ RG+ +     +M +E       
Sbjct: 575 DAEAF------ISNGIFHADPVIWRSLLASCRIHRDLERGQLVAN--RIMELEPTSSASY 626

Query: 390 A-LVDMYAKCGFISEARTLFDKMSERNT-----VTW-------NSMIFGCANHGYCDEAI 436
             L +MY   G +S A    D M +R       ++W       +S + G  +H    E+ 
Sbjct: 627 VILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSH---PESS 683

Query: 437 ELFNQMEE 444
            ++ ++EE
Sbjct: 684 AIYTKLEE 691


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 163/520 (31%), Positives = 281/520 (54%), Gaps = 40/520 (7%)

Query: 78  PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
           PA  +ER E +        G  +H  ++  GL  +  +   L+  Y +  ++  +  +F+
Sbjct: 228 PACGTERDEGF--------GLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFN 279

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
            + + N   W +  G +A  G+H++ + +F  M    +      + S+L A   L     
Sbjct: 280 GMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHL 339

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G+++H   ++ +  +D F+ ++L+DMY+K G  EKA  +F+ +  +++V+ NAM++   Q
Sbjct: 340 GKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQ 399

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSGDQV--------MVSKLF- 303
            G   EA  LV E+      PN  T   L+   S     K G Q+        ++S LF 
Sbjct: 400 NGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFV 459

Query: 304 ------------QLMRAKGV----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
                       QL  A+ +    E D VS+ ++I G   + C  E+   F++M   G  
Sbjct: 460 SNALIDVYAKCGQLNLARYIFDRSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIE 519

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
             + +    L AC++ +  ++GKEIHG  +   ++    + ++L+D+Y K G +  A  +
Sbjct: 520 HDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKI 579

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLV 466
           F+++++++  +WN+MI G   HG  D A ELF+ M++   + DH+S+ AVL+ C H GLV
Sbjct: 580 FNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLV 639

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           + G++ F+ M  +  I P+  HYACMVDLLGRAG+L+E+ E+I+ M    +  VWGALLG
Sbjct: 640 DRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLG 698

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +C+ HG+IELA +AA+HL EL+PE++    LL ++Y+ +G
Sbjct: 699 SCRIHGDIELARLAAEHLFELKPENSGYYTLLRNMYSESG 738



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 233/479 (48%), Gaps = 46/479 (9%)

Query: 97  GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G  LHA  +  GL      A   L+TFY  C     AR +FDE+P  ++  W +L  A  
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
             G  ++A      M   G+  N+  + S+L ACG   D G G  +H LVLK    +   
Sbjct: 197 TNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVN 256

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           + ++L+DMY K G +E +  VF+ M EK+ V+ N+ +  +   G   + L +   +    
Sbjct: 257 LGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHD 316

Query: 276 VKPNVVTW-----------------------------------NTLISGFSKSGDQVMVS 300
           V P  VT                                    NTL+  ++K G     S
Sbjct: 317 VTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKAS 376

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            +F+ +  +    +VVSW ++I+ L  N    EAF    EM   G CP S T+ ++LPAC
Sbjct: 377 AIFENIEVR----NVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPAC 432

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +  A+++ GK+IH  +I   +  DL V +AL+D+YAKCG ++ AR +FD+ SE++ V++N
Sbjct: 433 SRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYN 491

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           ++I G +    C E++ LF QM     + D +SF   L+AC ++   + G+ +  ++ + 
Sbjct: 492 TLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVK- 550

Query: 480 YKIMPRTEHYA-CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            +++      A  ++D+  + G L  A ++   + T+ D+  W  ++     HG I++A
Sbjct: 551 -RLLDSHPFLANSLLDVYTKGGMLDTASKIFNRI-TQKDVASWNTMILGYGMHGQIDVA 607


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 153/488 (31%), Positives = 259/488 (53%), Gaps = 42/488 (8%)

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
           +  ++++  R ++  +   LH+Q+I +G  + + ++  L+  Y +C  I  A  LFDE+P
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGE 199
             +   W ++  A+ +    +  +++ + M    GL+ + FV   +++AC  L  +  G+
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           ++H+  +   F  D  V SSLIDMY+KCG  + A+ VFD ++ K                
Sbjct: 126 QVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFK---------------- 169

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
                              N V+W ++ISG+++SG +     LF     +    ++ SWT
Sbjct: 170 -------------------NSVSWTSMISGYARSGRKCEAMDLFLQAPVR----NLFSWT 206

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIV 378
           ++ISGL+ +     +F  F EM  +G        +SS++  CA+ A +  GK+IHG  I 
Sbjct: 207 ALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIA 266

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           +G E  L + +ALVDMYAKC  I  A+ +F +M  ++ ++W S+I G A HG  +EA+ L
Sbjct: 267 LGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTL 326

Query: 439 FNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           +++M   R K + ++F  +L AC H GLV  G+ LF  M   Y I P  +HY C++DLL 
Sbjct: 327 YDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLS 386

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557
           R+G L EA  ++  +  +PD   W +LL AC  H N+E+    A  + +L+PE  +  +L
Sbjct: 387 RSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYIL 446

Query: 558 LTDLYANA 565
           L+++YA A
Sbjct: 447 LSNVYAGA 454


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 266/507 (52%), Gaps = 51/507 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYARRG 158
           +H Q  +  + +   + ++ I+     ++  ++ ++F  I P  N + +  +  A     
Sbjct: 40  IHTQFTIHSIHKPNHLLSQSISL----KDFTYSTLIFSHITPHPNDYAFNIMLRA-TTTT 94

Query: 159 YHQEAVTV--FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           +H   +T+  +H+M    +  N F  P V  AC +L +I      H  V K     D   
Sbjct: 95  WHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHT 154

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVEEIG 272
           V+S++ MY +CG    A+KVFDE+ EKD+V+ N+++SGY + G A EA+     L EE G
Sbjct: 155 VNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESG 214

Query: 273 TPRVKPNVVT---------------W-----------------NTLISGFSKSGDQVMVS 300
               + ++V+               W                 + LIS +SK G+ V   
Sbjct: 215 FEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSR 274

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           ++F  M ++    D ++W + IS    N   DEA   F  M   G  P   T++++L AC
Sbjct: 275 RIFDGMPSR----DFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           AS   +  GK++   A   G++ D+ V +AL+DMYAKCG +  A+ +F+ M  +N  +WN
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWN 390

Query: 421 SMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           +MI   A+HG   EA+ LF +M +     + + ++F ++L+AC H GLV+ G RLF+MM 
Sbjct: 391 AMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMS 450

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + ++P+ EHY+CMVDLL RAG L EA+++I+ M  +PD    GAL  AC+   N+++ 
Sbjct: 451 TLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIG 510

Query: 538 EIAAKHLSELEPESAANNMLLTDLYAN 564
           E   + L EL+P ++ N ++ + +Y N
Sbjct: 511 ERVIQMLLELDPSNSGNYIISSKIYEN 537



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 185/420 (44%), Gaps = 68/420 (16%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           ++  ++ H ++   GL         ++T Y  C     AR +FDEI + ++  W +L   
Sbjct: 133 IRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSG 192

Query: 154 YARRGYHQEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YA+ G+ +EAV VF  +  + G + +   + SVL ACG L D+  G  +   V++     
Sbjct: 193 YAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV 252

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           ++++ S+LI MYSKCG +  ++++FD M  +D +  NA +S Y Q G+A EA++L   + 
Sbjct: 253 NSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK 312

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV----------------- 315
              V PN VT   ++S  +  G   +  ++ +    +G++ D+                 
Sbjct: 313 ENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLE 372

Query: 316 --------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC--PTSATISSILPA 359
                          SW ++IS L  +    EA   F+ M  +G    P   T  S+L A
Sbjct: 373 SAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSA 432

Query: 360 CASAANMRRGKEIHG-CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           C  A  +  G  +    + + G+   +   S +VD+ ++ G + EA  + +KM E     
Sbjct: 433 CVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPE----- 487

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
                                       K D+++  A+ +AC     V++G+R+  M+ E
Sbjct: 488 ----------------------------KPDNVTLGALHSACQRKKNVDIGERVIQMLLE 519



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +       GL     +AT LI  Y +C ++  A+ +F+++P+ N   W A+  
Sbjct: 335 ALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMIS 394

Query: 153 AYARRGYHQEAVTVFHEMHIQG--LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
           A A  G  +EA+++F  M  +G   + N     S+L AC H   +  G ++  + +   F
Sbjct: 395 ALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDM-MSTLF 453

Query: 211 GTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSG 254
           G    +   S ++D+ S+ G + +A  V ++M EK D V + A+ S 
Sbjct: 454 GLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSA 500


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 163/506 (32%), Positives = 259/506 (51%), Gaps = 37/506 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH+  + +GLA     AT L+  Y +C     A  LFD +P+ N   W AL   Y  
Sbjct: 120 GTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVE 179

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G    AV +F EM  +G   +     ++L      S      ++H  ++K+       V
Sbjct: 180 SGKVAPAVQLFVEMEREGFLPDEATFAALLTVVND-STCFLMHQLHGKIVKYGSALGLIV 238

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEI-GTP 274
           +++ I  YS+CG++  ++++FDE+ ++ D+++ NAM+  Y   G+  EA+     +    
Sbjct: 239 LNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRAS 298

Query: 275 RVKPNVVTWNTLISGFSKSGDQ--VMVSKLFQLMRAKGVE-------------------- 312
            V+P++ ++ ++IS  ++  D    ++  L      +GV                     
Sbjct: 299 GVQPDMYSFTSIISACAEHRDHGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMME 358

Query: 313 -----------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                       D VSW S+++G   +  + +A   F+ M S+         S+ L +C+
Sbjct: 359 DAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCS 418

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
             A +R G++IHG  I  G   +  V S+L+ MY+K G + +A   F++  + ++V WNS
Sbjct: 419 DLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNS 478

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+FG A HG       LFNQM E K  LDH++F  ++TAC H GLV+ G  + N M+ +Y
Sbjct: 479 MMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRY 538

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            I  R EHYAC +DL GRAG+L +A E+I +M  EPD  VW  LLGAC+ HGN+ELA   
Sbjct: 539 GIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDV 598

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
           A HL E EP   +  +LL+++Y+  G
Sbjct: 599 ASHLLEAEPRQHSTYVLLSNMYSGLG 624



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 192/415 (46%), Gaps = 43/415 (10%)

Query: 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           HA L+ SG+   T     L  +      +  AR LFDEIP+ +   W +L  A+   G H
Sbjct: 23  HATLLKSGVTSPTPWNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAH 82

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
             A  +   MH +GL  N F + S L++   +     G ++HSL +K     + F  ++L
Sbjct: 83  PAACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATAL 142

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           + MY+KCG    A ++FD M E++ V+ NA+V+GYV+ G    A+ L  E+      P+ 
Sbjct: 143 LHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDE 202

Query: 281 VTW----------------------------------NTLISGFSKSGDQVMVSKLFQLM 306
            T+                                  N  I+ +S+ G      ++F  +
Sbjct: 203 ATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEI 262

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAAN 365
              G   D++SW +++     +    EA   F  M+ + G  P   + +SI+ ACA   +
Sbjct: 263 ---GDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRD 319

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG---FISEARTLFDKMSERNTVTWNSM 422
              G  IHG     G EG  HV +AL+ MY +      + +A   FD +  ++TV+WNSM
Sbjct: 320 -HGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSM 378

Query: 423 IFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           + G + HG   +A+  F  M+ E    D  +F+A L +C  + L+ LG+++  ++
Sbjct: 379 LTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLV 433



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 190/431 (44%), Gaps = 45/431 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYARRG 158
           LH +++  G A    +    IT Y++C  + ++R +FDEI  ++++  W A+ GAYA  G
Sbjct: 223 LHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHG 282

Query: 159 YHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
              EA+  F  M    G++ +++   S++ AC    D G G  IH LV K+ F     V 
Sbjct: 283 MEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDHG-GTVIHGLVSKNGFEGVTHVC 341

Query: 218 SSLIDMYSKCGS---VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           ++LI MY++      +E A K FD ++ KD V+ N+M++GY Q GL+ +AL     + + 
Sbjct: 342 NALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSE 401

Query: 275 RVKPNVVTWNTLI---------------------SGFSKSGDQVMVSKLFQLMRAKGVEP 313
            +  +   ++  +                     SGF+   +  + S L  +    G+  
Sbjct: 402 NITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFAS--NNFVSSSLIFMYSKSGILD 459

Query: 314 DV------------VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           D             V W S++ G   +         F +ML         T   ++ AC+
Sbjct: 460 DAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACS 519

Query: 362 SAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTW 419
            A  +  G EI +      G+   +   +  +D+Y + G + +A+ L D M  E + + W
Sbjct: 520 HAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMVW 579

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
            +++  C  HG  + A ++ + + E +   H ++  VL +  + GL     R     + K
Sbjct: 580 MTLLGACRVHGNMELASDVASHLLEAEPRQHSTY--VLLSNMYSGLGMWSDRAIVQKEMK 637

Query: 480 YKIMPRTEHYA 490
            K + +   ++
Sbjct: 638 NKGLSKVPGWS 648



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)

Query: 283 WNTLISGFSKSGDQVMVSK-LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
           WN L++ +S S   +  ++ LF  +       D  SW S+++  V    +  A    + M
Sbjct: 37  WNQLLTAYSVSSPGLAAARRLFDEIP----RLDAASWNSLLAAHVSIGAHPAACRLLRAM 92

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             +G    +  + S L + A+      G ++H  A+  G+  ++   +AL+ MYAKCG  
Sbjct: 93  HERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRT 152

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTAC 460
            +A  LFD M ERNTV+WN+++ G    G    A++LF +ME    L D  +F A+LT  
Sbjct: 153 RDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLT-- 210

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV-----DLLGRAGRLAEAYEMIKTMSTE 515
                V      F M Q   KI+        +V         + G LA +  +   +   
Sbjct: 211 -----VVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDR 265

Query: 516 PDLFVWGALLGACKNHG 532
            DL  W A+LGA   HG
Sbjct: 266 SDLISWNAMLGAYATHG 282



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 121/261 (46%), Gaps = 17/261 (6%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H  +I SG A    +++ LI  Y++   +  A   F+E  K++   W ++   
Sbjct: 423 LRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFG 482

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFGT 212
           YA+ G  Q   ++F++M    +  +      ++ AC H   +  G +I +++  ++    
Sbjct: 483 YAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPL 542

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRG---LATE-ALNL 267
                +  ID+Y + G ++KAK++ D M  E D +    ++      G   LA++ A +L
Sbjct: 543 RMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHL 602

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV-ISGLV 326
           +E    PR     V  + + SG     D+ +V K    M+ KG+   V  W+ + +   V
Sbjct: 603 LE--AEPRQHSTYVLLSNMYSGLGMWSDRAIVQK---EMKNKGLS-KVPGWSWIEVKNEV 656

Query: 327 HNFCNDEA----FDTFKEMLS 343
           H+F  ++      D   EMLS
Sbjct: 657 HSFNAEDGSHPRMDEIYEMLS 677


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 173/524 (33%), Positives = 281/524 (53%), Gaps = 55/524 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  GK +HA  +  G    + I   L+  Y +   +  +++L       ++  W  +  
Sbjct: 217 GLMMGKQVHAYGLRKGELN-SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFG 211
           +  +     EA+    EM ++G++ + F I SVL AC HL  + TG+++H+  LK+ S  
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 335

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV--- 268
            ++FV S+L+DMY  C  V   ++VFD M ++ I   NAM++GY Q     EAL L    
Sbjct: 336 ENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGM 395

Query: 269 -EEIG-------TPRVKPNVV-------------------------TWNTLISGFSKSGD 295
            E  G          V P  V                           NTL+  +S+ G 
Sbjct: 396 EESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGK 455

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM------LSQG---- 345
             +  ++F  M  +    D+V+W ++I+G V +  +++A     +M      +S+G    
Sbjct: 456 IDIAMRIFGKMEDR----DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRV 511

Query: 346 -FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
              P S T+ +ILP+CA+ + + +GKEIH  AI   +  D+ V SALVDMYAKCG +  +
Sbjct: 512 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS 571

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHV 463
           R +FD++ ++N +TWN +I     HG   EAI+L   M  +  K + ++F +V  AC H 
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD-LFVWG 522
           G+V+ G R+F +M+  Y + P ++HYAC+VDLLGRAGR+ EAY+++  M  + +    W 
Sbjct: 632 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691

Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +LLGA + H N+E+ EIAA++L +LEP  A++ +LL ++Y++AG
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAG 735



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 197/416 (47%), Gaps = 39/416 (9%)

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           WI L  +  R    +EAV  + +M + G+K + +  P++LKA   L D+  G++IH+ V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 207 KHSFGTDAFVVS-SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           K  +G D+  V+ +L+++Y KCG      KVFD + E++ V+ N+++S          AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSK--------SGDQV-------------------- 297
                +    V+P+  T  ++++  S          G QV                    
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 298 MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           M  KL +L  +K +       D+V+W +V+S L  N    EA +  +EM+ +G  P   T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           ISS+LPAC+    +R GKE+H  A+  G ++ +  V SALVDMY  C  +   R +FD M
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELG 469
            +R    WN+MI G + + +  EA+ LF  MEE   L  +  +   V+ AC   G     
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           + +   + ++     R      M D+  R G++  A  +   M  + DL  W  ++
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 478



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 158/337 (46%), Gaps = 22/337 (6%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R  A    + +H  ++  GL R   +   L+  Y+    I  A  +F ++   ++  W 
Sbjct: 416 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWN 475

Query: 149 ALTGAYARRGYHQEAVTVFHEMH-----------IQGLKQNIFVIPSVLKACGHLSDIGT 197
            +   Y    +H++A+ + H+M               LK N   + ++L +C  LS +  
Sbjct: 476 TMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAK 535

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G++IH+  +K++  TD  V S+L+DMY+KCG ++ ++KVFD++ +K+++  N ++  Y  
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 595

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVV 316
            G   EA++L+  +    VKPN VT+ ++ +  S SG      ++F +M+   GVEP   
Sbjct: 596 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSD 655

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
            +  V+  L       EA+     M+ + F    A  SS+L A     N+  G+      
Sbjct: 656 HYACVVDLLGRAGRIKEAYQLMN-MMPRDFNKAGAW-SSLLGASRIHNNLEIGE------ 707

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
             +  +  + +   +   Y     I  +  L+DK +E
Sbjct: 708 --IAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 182/533 (34%), Positives = 274/533 (51%), Gaps = 65/533 (12%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K+LHAQ+I+ GL   T    KLI+F    +  ++ +A+ +FD+IP+ N   + +L   Y+
Sbjct: 5   KLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYS 64

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                 +AV +F  M   GL  N F +P VLKACG  S       +H L +K   G+  F
Sbjct: 65  NSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 124

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LI +Y  CG +  A+K+FD++ +K +V+ N+M+ GY   G   EA  L  ++    
Sbjct: 125 VQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWG 184

Query: 276 VKPNVVTWNTLISGFSKSGDQ--------------------------VMVSKLFQLMRAK 309
           ++P+  T+  L+S  S+S D                            M +K   L  A+
Sbjct: 185 MEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQ 244

Query: 310 GV-----EPDVVSWTSVISGLVHNFCND-------------------------------E 333
            +     E +VVSWTS+IS    +   +                               E
Sbjct: 245 AIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYRE 304

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A D F +M +    P  AT+ SIL AC+   ++  GK+IH   +       + + ++L+D
Sbjct: 305 ALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLID 364

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLS 452
           MYAKCG +  A  +F +M  +N V+WN +I   A HG   EAI+LF +M+    L D ++
Sbjct: 365 MYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEIT 424

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
            T +L+AC H GLV++G   F+ M   Y++    EHYACMVDLLGR G L EA E+I  M
Sbjct: 425 LTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRM 484

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             +PD+ VWGALLGAC+ HGN+E+ +   K L ELEP S    +L++++Y  A
Sbjct: 485 PMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEA 537



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 143/309 (46%), Gaps = 9/309 (2%)

Query: 70  ISRSFHLSPAAYSERIEIYIR----DRALQSGKILHAQLIVSGLARLTQIA-TKLITFYT 124
           + R  H        +I+I +R    D   + G +  AQ I         ++ T +I+ Y 
Sbjct: 207 LGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYA 266

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
           +  +I  AR +FD++P  N+  W ++   Y R G ++EA+ +F++M    +  +   + S
Sbjct: 267 QHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVS 326

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +L AC  L D+  G+KIH+ +L +       + +SLIDMY+KCG V  A  +F EM  K+
Sbjct: 327 ILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKN 386

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +V+ N ++      G   EA+ L EE+      P+ +T   L+S  S SG   M    F 
Sbjct: 387 LVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFD 446

Query: 305 LMRAKGVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
            M      P ++  +  ++  L       EA +    M  +   P      ++L AC   
Sbjct: 447 RMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMK---PDVVVWGALLGACRIH 503

Query: 364 ANMRRGKEI 372
            N+  GK+I
Sbjct: 504 GNVEIGKQI 512


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 173/524 (33%), Positives = 281/524 (53%), Gaps = 55/524 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  GK +HA  +  G    + I   L+  Y +   +  +++L       ++  W  +  
Sbjct: 217 GLMMGKQVHAYGLRKGELN-SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFG 211
           +  +     EA+    EM ++G++ + F I SVL AC HL  + TG+++H+  LK+ S  
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 335

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV--- 268
            ++FV S+L+DMY  C  V   ++VFD M ++ I   NAM++GY Q     EAL L    
Sbjct: 336 ENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGM 395

Query: 269 -EEIG-------TPRVKPNVV-------------------------TWNTLISGFSKSGD 295
            E  G          V P  V                           NTL+  +S+ G 
Sbjct: 396 EESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGK 455

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM------LSQG---- 345
             +  ++F  M  +    D+V+W ++I+G V +  +++A     +M      +S+G    
Sbjct: 456 IDIAMRIFGKMEDR----DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRV 511

Query: 346 -FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
              P S T+ +ILP+CA+ + + +GKEIH  AI   +  D+ V SALVDMYAKCG +  +
Sbjct: 512 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS 571

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHV 463
           R +FD++ ++N +TWN +I     HG   EAI+L   M  +  K + ++F +V  AC H 
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD-LFVWG 522
           G+V+ G R+F +M+  Y + P ++HYAC+VDLLGRAGR+ EAY+++  M  + +    W 
Sbjct: 632 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691

Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +LLGA + H N+E+ EIAA++L +LEP  A++ +LL ++Y++AG
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAG 735



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 197/416 (47%), Gaps = 39/416 (9%)

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           WI L  +  R    +EAV  + +M + G+K + +  P++LKA   L D+  G++IH+ V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 207 KHSFGTDAFVVS-SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265
           K  +G D+  V+ +L+++Y KCG      KVFD + E++ V+ N+++S          AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSK--------SGDQV-------------------- 297
                +    V+P+  T  ++++  S          G QV                    
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 298 MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
           M  KL +L  +K +       D+V+W +V+S L  N    EA +  +EM+ +G  P   T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
           ISS+LPAC+    +R GKE+H  A+  G ++ +  V SALVDMY  C  +   R +FD M
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELG 469
            +R    WN+MI G + + +  EA+ LF  MEE   L  +  +   V+ AC   G     
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           + +   + ++     R      M D+  R G++  A  +   M  + DL  W  ++
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 478



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 158/337 (46%), Gaps = 22/337 (6%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R  A    + +H  ++  GL R   +   L+  Y+    I  A  +F ++   ++  W 
Sbjct: 416 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWN 475

Query: 149 ALTGAYARRGYHQEAVTVFHEMH-----------IQGLKQNIFVIPSVLKACGHLSDIGT 197
            +   Y    +H++A+ + H+M               LK N   + ++L +C  LS +  
Sbjct: 476 TMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAK 535

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G++IH+  +K++  TD  V S+L+DMY+KCG ++ ++KVFD++ +K+++  N ++  Y  
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 595

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVV 316
            G   EA++L+  +    VKPN VT+ ++ +  S SG      ++F +M+   GVEP   
Sbjct: 596 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSD 655

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
            +  V+  L       EA+     M+ + F    A  SS+L A     N+  G+      
Sbjct: 656 HYACVVDLLGRAGRIKEAYQLMN-MMPRDFNKAGAW-SSLLGASRIHNNLEIGE------ 707

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
             +  +  + +   +   Y     I  +  L+DK +E
Sbjct: 708 --IAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742


>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 267/484 (55%), Gaps = 16/484 (3%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K LH  +I + + +     ++L+ F  Y++  N+++A+ +F++I + +++ W ++   Y+
Sbjct: 22  KRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYS 81

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
                 EA+T++ EM  +G   + F  P VLKAC  ++    G+ +H+ ++K  F  D +
Sbjct: 82  ISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVY 141

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             ++L+ MY+ CG +E A KVFD++ + ++VA  ++++G +     +EA+ + +++    
Sbjct: 142 AATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWS 201

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-------DVVSWTSVISGLVHN 328
           V PN +T   ++   ++S D      +       G++P       +V+  T+++      
Sbjct: 202 VAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKC 261

Query: 329 FCN-----DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
             N     +EA D F +M   GF P  AT   ++ ACA    +  G+ +H       +  
Sbjct: 262 AYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTD 321

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           D  + +ALVDMYAK G    A+ +F ++ +++   W S+I G A HG+ +EA+  F +M+
Sbjct: 322 DTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQ 381

Query: 444 ERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           E   L  D +++  VL+AC HVG VE G+  F  M+  + I P T+HY CMVDLL RAGR
Sbjct: 382 EDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGR 441

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L EA  +++ M  EP+  +W ALL  CK + NI++A+   + + ELE + +   +LL+++
Sbjct: 442 LGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNI 501

Query: 562 YANA 565
           YA A
Sbjct: 502 YAGA 505


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 241/440 (54%), Gaps = 56/440 (12%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           +AR LFD+IP  NI  W ++   YA+   ++E   +F EM                    
Sbjct: 3   YARQLFDQIPDPNIALWNSMFRGYAQSESYRE---IFCEM-------------------- 39

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
                              F  +    +S+I+ Y     +  A+++FD   E+D+V  N 
Sbjct: 40  -------------------FERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNI 80

Query: 251 MVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           MVSGY++ G   EA  L  E+      PN  V+ WNT++ G++ +G+   +  LF+ M  
Sbjct: 81  MVSGYIEGGDMVEARKLFHEM------PNRDVMFWNTVLKGYATNGNVEALEGLFEEMP- 133

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPACASAANMR 367
              E ++ SW ++I G  HN    E   +FK MLS+    P  AT+ ++L ACA    + 
Sbjct: 134 ---ERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALD 190

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
            GK +H  A   G++G+++V +AL+DMYAKCG I  A ++F  M  ++ ++WN++I G A
Sbjct: 191 LGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 250

Query: 428 NHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486
            H    +A+ LF QM+   +K D ++F  +L AC H+GLVE G   F  M + Y IMP+ 
Sbjct: 251 MHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQI 310

Query: 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           EHY CMVD+L RAGRL +A   ++ M  E D  +W  LLGAC+ + N+ELAE+A + L E
Sbjct: 311 EHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIE 370

Query: 547 LEPESAANNMLLTDLYANAG 566
           LEP++ AN ++L+++Y +AG
Sbjct: 371 LEPKNPANYVMLSNIYGDAG 390



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 146/379 (38%), Gaps = 75/379 (19%)

Query: 51  AGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLA 110
           A   +ING  + A   +    R F L+P        I +    ++ G ++ A+ +   + 
Sbjct: 46  AWTSMINGYILSA--DLVSARRLFDLAPERDVVLWNIMVSGY-IEGGDMVEARKLFHEMP 102

Query: 111 -RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHE 169
            R       ++  Y    N+     LF+E+P+ NI  W AL G YA  G   E +  F  
Sbjct: 103 NRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKR 162

Query: 170 MHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228
           M  +  +  N   + +VL AC  L  +  G+ +H          + +V ++L+DMY+KCG
Sbjct: 163 MLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCG 222

Query: 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288
            +E A  VF  M  KD+++ N ++ G        +ALNL                     
Sbjct: 223 IIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNL--------------------- 261

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348
                         FQ M+  G +PD +++  ++    H    ++ F  F+ M       
Sbjct: 262 -------------FFQ-MKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSM------- 300

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
             A    I+P            E +GC               +VDM A+ G + +A    
Sbjct: 301 --ADDYLIMPQI----------EHYGC---------------MVDMLARAGRLEQAMAFV 333

Query: 409 DKMS-ERNTVTWNSMIFGC 426
            KM  E + V W  ++  C
Sbjct: 334 RKMPVEADGVIWAGLLGAC 352


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 250/467 (53%), Gaps = 40/467 (8%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           +A+ +F  +       + +L  A +      EA+ ++H M   GLK +    P V+KAC 
Sbjct: 147 YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 206

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK--------------- 235
             S    G  +H+ V+K  F  D+++VSSLI +Y+    +  AK+               
Sbjct: 207 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 266

Query: 236 ----------------VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
                           VFD MV +D+++ N M++GY   G   EA  L +E+     + N
Sbjct: 267 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMP----ERN 322

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
           +V+WN++++GF K G+      LF  M  +    DVVSW S+++        +EA   F 
Sbjct: 323 LVSWNSMLAGFVKCGNVEDAFGLFSEMPCR----DVVSWNSMLACYAQCGKPNEALALFD 378

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           +M + G  PT AT+ S+L ACA    + +G  +H       +E +  V +ALVDMYAKCG
Sbjct: 379 QMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 438

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLT 458
            IS A  +F+ M  ++ + WN++I G A HG   EA +LF +M+E   + + ++F A+L+
Sbjct: 439 KISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 498

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           AC H G+V+ GQ+L + M   Y I P+ EHY C++DLL RAG L EA E+I TM  EP+ 
Sbjct: 499 ACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNP 558

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
              GALLG C+ HGN EL E+  K L  L+P  +   +LL+++YA A
Sbjct: 559 SALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAA 605



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 5/278 (1%)

Query: 97  GKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           GKI  A+ +   +     ++   ++  + +C N+  A  LF E+P  ++  W ++   YA
Sbjct: 306 GKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYA 365

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           + G   EA+ +F +M   G+K     + S+L AC HL  +  G  +H+ +  +    ++ 
Sbjct: 366 QCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI 425

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++L+DMY+KCG +  A +VF+ M  KD++A N +++G    G   EA  L +E+    
Sbjct: 426 VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAG 485

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEA 334
           V+PN +T+  ++S  S +G      KL   M +  G+EP V  +  VI  L      +EA
Sbjct: 486 VEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEA 545

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            +    M  +   P  + + ++L  C    N   G+ +
Sbjct: 546 MELIGTMPME---PNPSALGALLGGCRIHGNFELGEMV 580


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 164/508 (32%), Positives = 266/508 (52%), Gaps = 43/508 (8%)

Query: 98   KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
            +++HA LI S       + T  +  + +C ++ +A  +F+ +P+ +   W A+   + + 
Sbjct: 678  EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 737

Query: 158  GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
            G+  +A ++F EM +  +  +   + +++++      +   E +H++ ++        V 
Sbjct: 738  GHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVA 797

Query: 218  SSLIDMYSKCGSVEKAKKVFDEMVEKD--IVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
            ++ I  Y KCG ++ AK VF+ +   D  +V+ N+M   Y   G A +A  L   +    
Sbjct: 798  NTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREE 857

Query: 276  VKPNVVTW-----------------------------------NTLISGFSKSGDQVMVS 300
             KP++ T+                                   NT IS +SKS D     
Sbjct: 858  FKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSAR 917

Query: 301  KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
             LF +M ++      VSWT +ISG       DEA   F  M+  G  P   T+ S++  C
Sbjct: 918  LLFDIMTSRTC----VSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGC 973

Query: 361  ASAANMRRGKEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
                ++  GK I   A + G + D + + +AL+DMY+KCG I EAR +FD   E+  VTW
Sbjct: 974  GKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTW 1033

Query: 420  NSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
             +MI G A +G   EA++LF++M +   K +H++F AVL AC H G +E G   F++M++
Sbjct: 1034 TTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQ 1093

Query: 479  KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
             Y I P  +HY+CMVDLLGR G+L EA E+I+ MS +PD  +WGALL ACK H N+++AE
Sbjct: 1094 VYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAE 1153

Query: 539  IAAKHLSELEPESAANNMLLTDLYANAG 566
             AA+ L  LEP+ AA  + + ++YA AG
Sbjct: 1154 QAAESLFNLEPQMAAPYVEMANIYAAAG 1181



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 192/415 (46%), Gaps = 65/415 (15%)

Query: 162  EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221
            E++ +F EM   G + N F  P V KAC  L+D+G  E +H+ ++K  F +D FV ++ +
Sbjct: 641  ESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATV 700

Query: 222  DMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281
            DM+ KC SV+ A KVF+ M E+D    NAM+SG+ Q G   +A +L  E+    + P+ V
Sbjct: 701  DMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSV 760

Query: 282  T-----------------------------------WNTLISGFSKSGDQVMVSKLFQLM 306
            T                                    NT IS + K GD      +F+ +
Sbjct: 761  TVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAI 820

Query: 307  RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK---EMLSQGFCPTSATISSILPACASA 363
              +G +  VVSW S+           EAFD F     ML + F P  +T  ++  +C + 
Sbjct: 821  -DRG-DRTVVSWNSMFKAYS---VFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNP 875

Query: 364  ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
              + +G+ IH  AI +G + D+   +  + MY+K      AR LFD M+ R  V+W  MI
Sbjct: 876  ETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMI 935

Query: 424  FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
             G A  G  DEA+ LF+ M +  +K D ++  ++++ C   G +E G+           I
Sbjct: 936  SGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKW----------I 985

Query: 483  MPRTEHYAC----------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
              R + Y C          ++D+  + G + EA ++    + E  +  W  ++  
Sbjct: 986  DARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDN-TPEKTVVTWTTMIAG 1039



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 136/276 (49%), Gaps = 5/276 (1%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            L  G+++H+  I  G  +  +     I+ Y++ ++   AR+LFD +       W  +   
Sbjct: 878  LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 937

Query: 154  YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            YA +G   EA+ +FH M   G K ++  + S++  CG    + TG+ I +    +    D
Sbjct: 938  YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRD 997

Query: 214  AFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              ++ ++LIDMYSKCGS+ +A+ +FD   EK +V    M++GY   G+  EAL L  ++ 
Sbjct: 998  NVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMI 1057

Query: 273  TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR-AKGVEPDVVSWTSVISGLVHNFCN 331
                KPN +T+  ++   + SG      + F +M+    + P +  ++ ++  L      
Sbjct: 1058 DLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKL 1117

Query: 332  DEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
            +EA +  + M ++   P +    ++L AC    N++
Sbjct: 1118 EEALELIRNMSAK---PDAGIWGALLNACKIHRNVK 1150



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 294 GDQVMVSKLF---QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           G+QV  S      +L R  G+   V +W   I   V+     E+   F+EM   GF P +
Sbjct: 600 GEQVRKSMSLIHRRLYRISGLS-SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNN 658

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
            T   +  ACA  A++   + +H   I      D+ V +A VDM+ KC  +  A  +F++
Sbjct: 659 FTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFER 718

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
           M ER+  TWN+M+ G    G+ D+A  LF +M
Sbjct: 719 MPERDATTWNAMLSGFCQSGHTDKAFSLFREM 750


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 159/474 (33%), Positives = 259/474 (54%), Gaps = 18/474 (3%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           Q+G +  A+ +   +     ++   L++ Y +   +  A MLF       +  W  L G 
Sbjct: 169 QNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGG 228

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           + ++    EA   F  M+++    ++    +++        I    ++       S   D
Sbjct: 229 FVKKKKIVEARQFFDSMNVR----DVVSWNTIITGYAQSGKIDEARQL----FDESPVQD 280

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            F  ++++  Y +   VE+A+++FD+M E++ V+ NAM++GYVQ     E + + +E+  
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQ----GERMEMAKELFD 336

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                NV TWNT+I+G+++ G       LF  M  +    D VSW ++I+G   +  + E
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKR----DPVSWAAMIAGYSQSGHSFE 392

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   F +M  +G     ++ SS L  CA    +  GK++HG  +  G E    V +AL+ 
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLS 452
           MY KCG I EA  LF +M+ ++ V+WN+MI G + HG+ + A+  F  M+ E  K D  +
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512

Query: 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
             AVL+AC H GLV+ G++ F  M + Y +MP ++HYACMVDLLGRAG L +A+ ++K M
Sbjct: 513 MVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572

Query: 513 STEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             EPD  +WG LLGA + HGN ELAE AA  +  +EPE++   +LL++LYA++G
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSG 626



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 27/334 (8%)

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           I  Y + G   +A +VF  M     V+ N M+SGY++ G    A  L +E+     + ++
Sbjct: 71  ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM----PERDL 126

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           V+WN +I G+ ++ +     +LF++M     E DV SW +++SG   N C D+A   F  
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIM----PERDVCSWNTMLSGYAQNGCVDDARSVFDR 182

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG-DLHVRSALVDMYAKCG 399
           M  +     +A +S         A ++  K    C +    E   L   + L+  + K  
Sbjct: 183 MPEKNDVSWNALLS---------AYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK 233

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459
            I EAR  FD M+ R+ V+WN++I G A  G  DEA +LF   +E    D  ++TA+++ 
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF---DESPVQDVFTWTAMVSG 290

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
                +VE  + LF+ M E+ ++      +  M+    +  R+  A E+   M    ++ 
Sbjct: 291 YIQNRMVEEARELFDKMPERNEV-----SWNAMLAGYVQGERMEMAKELFDVMPCR-NVS 344

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
            W  ++      G I  A+     + + +P S A
Sbjct: 345 TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWA 378



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 153/320 (47%), Gaps = 35/320 (10%)

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR---GLATEALNLVEEIGTP 274
           + +I  Y + G  E A+K+FDEM E+D+V+ N M+ GYV+    G A E   ++ E    
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE---- 154

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
               +V +WNT++SG++++G       +F  M     E + VSW +++S  V N   +EA
Sbjct: 155 ---RDVCSWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEA 207

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
              FK   +      +  +   +         ++  E       M V  D+   + ++  
Sbjct: 208 CMLFKSRENWALVSWNCLLGGFVKK-------KKIVEARQFFDSMNVR-DVVSWNTIITG 259

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT 454
           YA+ G I EAR LFD+   ++  TW +M+ G   +   +EA ELF++M ER   + +S+ 
Sbjct: 260 YAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER---NEVSWN 316

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAEAYEMIKTM 512
           A+L      G V+ G+R+  M +E + +MP      +  M+    + G+++EA  +   M
Sbjct: 317 AML-----AGYVQ-GERM-EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 369

Query: 513 STEPDLFVWGALLGACKNHG 532
               D   W A++      G
Sbjct: 370 PKR-DPVSWAAMIAGYSQSG 388



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 7/252 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK LH +L+  G      +   L+  Y +C +I  A  LF E+   +I  W  +  
Sbjct: 424 ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIA 483

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            Y+R G+ + A+  F  M  +GLK +   + +VL AC H   +  G +  +++   +   
Sbjct: 484 GYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVM 543

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
            ++   + ++D+  + G +E A  +   M  E D      ++      G    A    ++
Sbjct: 544 PNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADK 603

Query: 271 IGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEP-DVVSWTSVISGLVHN 328
           I    ++P       L+S  ++ SG    V KL   MR KGV+     SW   I    H 
Sbjct: 604 IFA--MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE-IQNKTHT 660

Query: 329 FCNDEAFDTFKE 340
           F   + F   K+
Sbjct: 661 FSVGDEFHPEKD 672



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 19/227 (8%)

Query: 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK- 370
           + D+  W   IS  +     +EA   FK M        +  IS  L         R G+ 
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYL---------RNGEF 111

Query: 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430
           E+         E DL   + ++  Y +   + +AR LF+ M ER+  +WN+M+ G A +G
Sbjct: 112 ELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNG 171

Query: 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
             D+A  +F++M E+   + +S+ A+L+A      +E    LF   +E + ++     + 
Sbjct: 172 CVDDARSVFDRMPEK---NDVSWNALLSAYVQNSKMEEACMLFK-SRENWALVS----WN 223

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           C++    +  ++ EA +   +M+   D+  W  ++      G I+ A
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVR-DVVSWNTIITGYAQSGKIDEA 269


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 247/449 (55%), Gaps = 17/449 (3%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           ++  Y     I  AR LFD   + +   W AL   Y +R   +EA  +F++M     +++
Sbjct: 237 MLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMP----QRD 292

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
           +    +++       D+    ++  +        D F  ++++  Y++ G +E+AK+VFD
Sbjct: 293 VVSWNTMVSGYARRGDMAEARRLFDVAPIR----DVFTWTAIVSGYAQNGMLEEAKRVFD 348

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M +K+ V+ NAM++ YVQR +  EA  L + +       NV +WNT+++G++++G    
Sbjct: 349 AMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR----NVASWNTMLTGYAQAGMLDE 404

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              +F +M  K    D VSW ++++       ++E    FKEM   G     +  + +L 
Sbjct: 405 ARAIFGMMPQK----DAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLS 460

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
            CA  A +  G ++H   I  G      V +AL+ MY KCG + EA + F++M ER+ V+
Sbjct: 461 TCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVS 520

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G A HG+  EA+E+F+ M +   K D ++   VL AC H GLVE G   F  M 
Sbjct: 521 WNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 580

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + +  + EHY CM+DLLGRAGRL EA  ++K M  EPD  +WGALLGA + H N EL 
Sbjct: 581 RDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELG 640

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
             AA+ + ELEPE+A   +LL+++YA++G
Sbjct: 641 RNAAEKIFELEPENAGMYVLLSNIYASSG 669



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 120/536 (22%), Positives = 227/536 (42%), Gaps = 86/536 (16%)

Query: 52  GKPLINGIFIEAHYKMPIISRSFHLSPAAYS------ERIEIYIRDRA----LQSGKILH 101
           GKP    +    H +     RS    PA           +E+  R+RA    +++G++  
Sbjct: 69  GKP---PMLPSRHLRAAARQRSHRRPPAPADACITGKPDMEVIRRNRAITAHMRAGRVPD 125

Query: 102 AQLIVSGLARL-TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160
           A+ + + + R  T     ++  Y     +  A   F  IP+ +   +  L  A       
Sbjct: 126 AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSL 185

Query: 161 QEAVTVFHEMHIQ-GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV--LKHSFG----TD 213
            +   +F EM ++  +  N+ +               +    H LV   +H F      D
Sbjct: 186 ADVRALFDEMPVKDSVSYNVMI---------------SSHANHGLVSLARHYFDLAPEKD 230

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           A   + ++  Y + G +++A+++FD   E D ++ NA+++GYVQR    EA  +  ++  
Sbjct: 231 AVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM-- 288

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
              + +VV+WNT++SG+++ GD     +LF +   +    DV +WT+++SG   N   +E
Sbjct: 289 --PQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIR----DVFTWTAIVSGYAQNGMLEE 342

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
           A   F  M  +     + + ++++ A      M   KE+        V       + ++ 
Sbjct: 343 AKRVFDAMPDK----NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVAS----WNTMLT 394

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLS 452
            YA+ G + EAR +F  M +++ V+W +M+   +  G+ +E ++LF +M    + ++  +
Sbjct: 395 GYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSA 454

Query: 453 FTAVLTACCHVGLVELGQRLFNM-------------------------MQEKYKIMPRTE 487
           F  VL+ C  +  +E G +L +                          M+E +      E
Sbjct: 455 FACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEME 514

Query: 488 H-----YACMVDLLGRAGRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIE 535
                 +  M+    R G   EA E+  TM   ST+PD      +L AC + G +E
Sbjct: 515 ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVE 570



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 140/348 (40%), Gaps = 63/348 (18%)

Query: 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV 280
           I  + + G V  A+++F  M  +     N M++GY   G   +AL+    I  PR  P+ 
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSI--PR--PDS 169

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
            ++NTL+     S     V  LF  M  K    D VS+  +IS   ++            
Sbjct: 170 FSYNTLLHALGVSSSLADVRALFDEMPVK----DSVSYNVMISSHANH------------ 213

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
               G    +     + P                       E D    + ++  Y + G 
Sbjct: 214 ----GLVSLARHYFDLAP-----------------------EKDAVSWNGMLAAYVRNGR 246

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460
           I EAR LFD  +E + ++WN+++ G       +EA ++FN+M +R   D +S+  +++  
Sbjct: 247 IQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQR---DVVSWNTMVSGY 303

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
              G +   +RLF++   +         +  +V    + G L EA  +   M  + +   
Sbjct: 304 ARRGDMAEARRLFDVAPIRDVFT-----WTAIVSGYAQNGMLEEAKRVFDAM-PDKNAVS 357

Query: 521 WGALLGACKNHGNIELAEIAAKHLSELEP--ESAANNMLLTDLYANAG 566
           W A++ A      +E     AK L +  P    A+ N +LT  YA AG
Sbjct: 358 WNAMMAAYVQRRMME----EAKELFDAMPCRNVASWNTMLTG-YAQAG 400



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 130/344 (37%), Gaps = 80/344 (23%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T +++ Y +   +  A+ +FD +P  N   W A+  AY +R   +EA  +F  M      
Sbjct: 328 TAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAM------ 381

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
                       C +++   T                      ++  Y++ G +++A+ +
Sbjct: 382 -----------PCRNVASWNT----------------------MLTGYAQAGMLDEARAI 408

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------------- 283
           F  M +KD V+  AM++ Y Q G + E L L +E+G      N   +             
Sbjct: 409 FGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAAL 468

Query: 284 ----------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
                                 N L++ + K G        F+ M     E DVVSW ++
Sbjct: 469 ECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEME----ERDVVSWNTM 524

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG-KEIHGCAIVMG 380
           I+G   +    EA + F  M      P   T+  +L AC+ +  + +G    +      G
Sbjct: 525 IAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFG 584

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMI 423
           V       + ++D+  + G + EA  L   M  E ++  W +++
Sbjct: 585 VATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALL 628



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 7/241 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G  LH++LI +G      +   L+  Y +C ++  A   F+E+ + ++  W  +  
Sbjct: 467 ALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIA 526

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLKHSFG 211
            YAR G+ +EA+ VF  M     K +   +  VL AC H   +  G    +S+       
Sbjct: 527 GYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVA 586

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           T     + +ID+  + G +++A  +  +M  E D     A++        +    N  E+
Sbjct: 587 TKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEK 646

Query: 271 IGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEP-DVVSWTSVISGLVHN 328
           I    ++P       L+S  ++ SG    V K+  +M  +GV+     SW  V    VH 
Sbjct: 647 IFE--LEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEV-QNKVHT 703

Query: 329 F 329
           F
Sbjct: 704 F 704


>gi|356501914|ref|XP_003519768.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02750-like [Glycine max]
          Length = 627

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 260/477 (54%), Gaps = 43/477 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           +++H   +  G+     +AT L+T Y +C  +  A  +F+E+P  ++  + A      + 
Sbjct: 157 EMMHCCAVKLGVEFDAYVATSLVTAYCKCGEVVSASKVFEELPVKSVVSYNAFVSGLLQN 216

Query: 158 GYHQEAVTVFHEMHIQG-----LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           G  +  + VF EM ++G      K N   + SVL ACG L  I  G ++H +V+K   G 
Sbjct: 217 GVPRLVLDVFKEM-MRGEECVECKLNSVTLVSVLSACGSLQSIRFGRQVHGVVVKLEAGD 275

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              V+++L+DMYSKCG    A +VF                                  G
Sbjct: 276 GVMVMTALVDMYSKCGFWRSAFEVF---------------------------------TG 302

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + N++TWN++I+G   + +      +FQ + ++G++PD  +W S+ISG        
Sbjct: 303 VEGNRRNLITWNSMIAGMMLNKESERAVDMFQRLESEGLKPDSATWNSMISGFAQLGECG 362

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EAF  F +M S G  P    ++S+L ACA ++ ++ GKEIHG ++   +  D  + +ALV
Sbjct: 363 EAFKYFGQMQSVGVAPCLKIVTSLLSACADSSMLQHGKEIHGLSLRTDINRDDFLVTALV 422

Query: 393 DMYAKCGFISEARTLFDKMSER--NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLD 449
           DMY KCG  S AR +FD+   +  +   WN+MI G   +G  + A E+F++M EE  + +
Sbjct: 423 DMYMKCGLASWARGVFDQYDAKPDDPAFWNAMIGGYGRNGDYESAFEIFDEMLEEMVRPN 482

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
             +F +VL+AC H G V+ G   F MM+ +Y + P+ EH+ C+VDLLGR+GRL+EA +++
Sbjct: 483 SATFVSVLSACSHTGQVDRGLHFFRMMRIEYGLQPKPEHFGCIVDLLGRSGRLSEAQDLM 542

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + ++ EP   V+ +LLGAC+ + +  L E  AK L ++EPE+ A  ++L+++YA  G
Sbjct: 543 EELA-EPPASVFASLLGACRCYLDSNLGEEMAKKLLDVEPENPAPLVVLSNIYAGLG 598



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 211/475 (44%), Gaps = 85/475 (17%)

Query: 158 GYHQEAVTVFHEMH-IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
           G+++EA+++F  +H       + F  P++ KAC +L      + +H+ +LK  F +D + 
Sbjct: 15  GFYREALSLFSHLHSCSSHTLHSFTFPTLFKACTNLRSPSHTQTLHAHLLKTGFHSDPYA 74

Query: 217 VSSLIDMYSKCGS-VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
            S+L   Y+        A K FDEM + ++ ++NA +SG+ + G   EAL +    G   
Sbjct: 75  SSALTAAYAANPRHFLDALKAFDEMPQPNVASLNAALSGFSRNGRRGEALRVFRRAGLGP 134

Query: 276 VKPNVVT---------------------------------WNTLISGFSKSGDQVMVSKL 302
           ++PN VT                                   +L++ + K G+ V  SK+
Sbjct: 135 LRPNSVTIACMLGVPRVGANHVEMMHCCAVKLGVEFDAYVATSLVTAYCKCGEVVSASKV 194

Query: 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP----TSATISSILP 358
           F+ +  K     VVS+ + +SGL+ N       D FKEM+    C      S T+ S+L 
Sbjct: 195 FEELPVK----SVVSYNAFVSGLLQNGVPRLVLDVFKEMMRGEECVECKLNSVTLVSVLS 250

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF---------- 408
           AC S  ++R G+++HG  + +     + V +ALVDMY+KCGF   A  +F          
Sbjct: 251 ACGSLQSIRFGRQVHGVVVKLEAGDGVMVMTALVDMYSKCGFWRSAFEVFTGVEGNRRNL 310

Query: 409 ------------DKMSER---------------NTVTWNSMIFGCANHGYCDEAIELFNQ 441
                       +K SER               ++ TWNSMI G A  G C EA + F Q
Sbjct: 311 ITWNSMIAGMMLNKESERAVDMFQRLESEGLKPDSATWNSMISGFAQLGECGEAFKYFGQ 370

Query: 442 MEERKKLDHLSF-TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M+       L   T++L+AC    +++ G+ +   +  +  I         +VD+  + G
Sbjct: 371 MQSVGVAPCLKIVTSLLSACADSSMLQHGKEIHG-LSLRTDINRDDFLVTALVDMYMKCG 429

Query: 501 RLAEAYEMIKTMSTEP-DLFVWGALLGACKNHGNIELA-EIAAKHLSEL-EPESA 552
             + A  +      +P D   W A++G    +G+ E A EI  + L E+  P SA
Sbjct: 430 LASWARGVFDQYDAKPDDPAFWNAMIGGYGRNGDYESAFEIFDEMLEEMVRPNSA 484


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 172/524 (32%), Positives = 282/524 (53%), Gaps = 55/524 (10%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L  GK +HA  +  G    + I   L+  Y +   +  +++L       ++  W  +  
Sbjct: 130 GLMMGKQVHAYGLRKGELN-SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 188

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFG 211
           +  +     EA+    EM ++G++ + F I SVL AC HL  + TG+++H+  LK+ S  
Sbjct: 189 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 248

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL---V 268
            ++FV S+L+DMY  C  V   ++VFD M ++ I   NAM++GY Q     EAL L   +
Sbjct: 249 ENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGM 308

Query: 269 EE----IGTPRVKPNVV-----------------------------TWNTLISGFSKSGD 295
           EE    +        VV                               NTL+  +S+ G 
Sbjct: 309 EESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGK 368

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM------LSQG---- 345
             +  ++F  M  +    D+V+W ++I+G V +  +++A     +M      +S+G    
Sbjct: 369 IDIAMRIFGKMEDR----DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRV 424

Query: 346 -FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
              P S T+ +ILP+CA+ + + +GKEIH  AI   +  D+ V SALVDMYAKCG +  +
Sbjct: 425 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS 484

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHV 463
           R +FD++ ++N +TWN +I     HG   EAI+L   M  +  K + ++F +V  AC H 
Sbjct: 485 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 544

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD-LFVWG 522
           G+V+ G R+F +M+  Y + P ++HYAC+VDLLGRAGR+ EAY+++  M  + +    W 
Sbjct: 545 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 604

Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +LLGA + H N+E+ EIAA++L +LEP  A++ +LL ++Y++AG
Sbjct: 605 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAG 648



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 186/393 (47%), Gaps = 39/393 (9%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS-SLIDMYSKCG 228
           M + G+K + +  P++LKA   L D+  G++IH+ V K  +G D+  V+ +L+++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288
                 KVFD + E++ V+ N+++S          AL     +    V+P+  T  ++++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 289 GFSK--------SGDQV--------------------MVSKLFQLMRAKGV-----EPDV 315
             S          G QV                    M  KL +L  +K +       D+
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDL 180

Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
           V+W +V+S L  N    EA +  +EM+ +G  P   TISS+LPAC+    +R GKE+H  
Sbjct: 181 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 240

Query: 376 AIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
           A+  G ++ +  V SALVDMY  C  +   R +FD M +R    WN+MI G + + +  E
Sbjct: 241 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 300

Query: 435 AIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           A+ LF  MEE   L  +  +   V+ AC   G     + +   + ++     R      M
Sbjct: 301 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM 360

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
            D+  R G++  A  +   M  + DL  W  ++
Sbjct: 361 -DMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 391



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 158/337 (46%), Gaps = 22/337 (6%)

Query: 89  IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           +R  A    + +H  ++  GL R   +   L+  Y+    I  A  +F ++   ++  W 
Sbjct: 329 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWN 388

Query: 149 ALTGAYARRGYHQEAVTVFHEMH-----------IQGLKQNIFVIPSVLKACGHLSDIGT 197
            +   Y    +H++A+ + H+M               LK N   + ++L +C  LS +  
Sbjct: 389 TMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAK 448

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G++IH+  +K++  TD  V S+L+DMY+KCG ++ ++KVFD++ +K+++  N ++  Y  
Sbjct: 449 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 508

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVV 316
            G   EA++L+  +    VKPN VT+ ++ +  S SG      ++F +M+   GVEP   
Sbjct: 509 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSD 568

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
            +  V+  L       EA+     M+ + F    A  SS+L A     N+  G+      
Sbjct: 569 HYACVVDLLGRAGRIKEAYQLMN-MMPRDFNKAGAW-SSLLGASRIHNNLEIGE------ 620

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
             +  +  + +   +   Y     I  +  L+DK +E
Sbjct: 621 --IAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 655


>gi|413948598|gb|AFW81247.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 788

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 159/491 (32%), Positives = 250/491 (50%), Gaps = 39/491 (7%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           ++T L   Y +   +  A  + DE+P  N+  W  L  + AR G   +A+  F EM   G
Sbjct: 91  VSTALADAYAKAGRLDLALQVLDEMPSRNVVSWTTLVASLARAGRRHDALRRFAEMRASG 150

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +  +     + L AC     +  G ++H+L  K       FV ++L  +Y++CG V++A 
Sbjct: 151 VACDSHACSAALTACADAGLLPRGREVHALCAKLGLDAVPFVANALAALYARCGDVDRAL 210

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALN----LVEEIGTPRVKPNVVTWNTLISGF 290
                M   D+     +++ YVQ G   EA+     ++ +  +    PN  T++ +I+  
Sbjct: 211 AAVGRMGSHDVAVCTTLIASYVQTGRTEEAIEAFVRMLRDESSNSASPNEYTFSAVIAAC 270

Query: 291 SKS-----GDQV--------------MVSKLFQLMRAKG------------VEPDVVSWT 319
                   G+Q+              + + L +L   +G            V  DVVSW+
Sbjct: 271 PNMDRAYLGEQLHAQAARRGLSHARSVANSLVKLYSRRGHLSAADAIFRESVVKDVVSWS 330

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCP--TSATISSILPACASAANMRRGKEIHGCAI 377
           ++ISG       +E+F  F EM     CP     T++S+   CASAA++  G+++H  A+
Sbjct: 331 TIISGYTQEGLAEESFALFSEMRHHSSCPRPNEFTLASLFSVCASAASLDTGRQLHALAV 390

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
             G+E    VRSALV+MY K G +S+A  +F   ++ + ++W +MI G A HG+  EA E
Sbjct: 391 AAGLEHHAMVRSALVNMYGKGGSMSDANVVFSNRTKDDVISWTAMIVGHAEHGHSKEAFE 450

Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF +M     K DH++F  VLTAC H G +ELG R  N M + Y + P  EHY C+VDLL
Sbjct: 451 LFEEMCRIGLKPDHVTFIGVLTACSHAGELELGLRYLNAMNKSYGLEPEKEHYGCVVDLL 510

Query: 497 GRAGRLAEAYEMI-KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
            RAGR+ EA E+I +  + E D  VW +LL AC   G  E  +IAA+ + E EP  +  +
Sbjct: 511 ARAGRIHEAEELIGRIAAEERDGVVWTSLLRACAARGAEETGKIAAERMMEAEPWGSGAH 570

Query: 556 MLLTDLYANAG 566
           +++ +LYA+ G
Sbjct: 571 VVMANLYASKG 581



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 105/299 (35%), Gaps = 66/299 (22%)

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           V + TL+SG++ + D      LF   RA   +P   +   ++S ++    +  A      
Sbjct: 7   VAYATLLSGYAAAADFPGAMALFSRFRASSSQPHDAADPFILSPVLKACASAAASAGLLP 66

Query: 341 MLSQGFCPTS---ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
           +            A  SS LP+                         + V +AL D YAK
Sbjct: 67  LPHAAAAAALHAFAVRSSSLPS-------------------------VFVSTALADAYAK 101

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAV 456
            G +  A  + D+M  RN V+W +++   A  G   +A+  F +M       D  + +A 
Sbjct: 102 AGRLDLALQVLDEMPSRNVVSWTTLVASLARAGRRHDALRRFAEMRASGVACDSHACSAA 161

Query: 457 LTACCHVGLVELGQRLF---------------NMMQEKYKIMPRTEHYACMVDLLG---- 497
           LTAC   GL+  G+ +                N +   Y      +     V  +G    
Sbjct: 162 LTACADAGLLPRGREVHALCAKLGLDAVPFVANALAALYARCGDVDRALAAVGRMGSHDV 221

Query: 498 -----------RAGRLAEAYEMIKTM-------STEPDLFVWGALLGACKNHGNIELAE 538
                      + GR  EA E    M       S  P+ + + A++ AC N     L E
Sbjct: 222 AVCTTLIASYVQTGRTEEAIEAFVRMLRDESSNSASPNEYTFSAVIAACPNMDRAYLGE 280


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 272/521 (52%), Gaps = 57/521 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H   I +GL     ++T L+  Y +C  +  A  +F  +P  ++  W A+   YA 
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203

Query: 157 RGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK------- 207
            G +  AV     M +Q   L+ N   + ++L        +  G  +H+  ++       
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNR 263

Query: 208 --HSFGTDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
              S  TD  ++ ++L+DMY+KCGS+  A++VFD M  ++ V  +A++ G+V     T+A
Sbjct: 264 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 323

Query: 265 LNLVEE------------------------------------IGTPRVKPNVVTWNTLIS 288
             L +                                     +    V  ++   N+L+S
Sbjct: 324 FLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLS 383

Query: 289 GFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
            ++K+G  DQ +   LF  M  K    D VS+++++SG V N   +EAF  FK+M +   
Sbjct: 384 MYAKAGLIDQAIA--LFDEMAVK----DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 437

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P +AT+ S++PAC+  A ++ G+  HG  I+ G+  +  + +AL+DMYAKCG I  +R 
Sbjct: 438 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 497

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +F+ M  R+ V+WN+MI G   HG   EA  LF +M       D ++F  +L+AC H GL
Sbjct: 498 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 557

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           V  G+  F++M+  Y + PR EHY CMVDLL R G L EAYE I++M    D+ VW ALL
Sbjct: 558 VIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GAC+ + NI+L +  ++ + EL PE   N +LL+++Y+ AG
Sbjct: 618 GACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 658



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 210/452 (46%), Gaps = 57/452 (12%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEA--VTVFHEMHIQGLKQNIFVIPSVLKAC 189
           A  LFD+IP  ++  +  L  AY+       A  + ++  M    +  N +  P  LKAC
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
             L+D   G  IH   +      D FV ++L+DMY KC  +  A  +F  M  +D+VA N
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 250 AMVSGYVQRGLATEALN--LVEEIGTPRVKPN---------------------------- 279
           AM++GY   G+   A+   L  ++   R++PN                            
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255

Query: 280 -----------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
                            V+    L+  ++K G  +   ++F  M A+    + V+W+++I
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR----NEVTWSALI 311

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGV 381
            G V      +AF  FK ML+QG C  S T I+S L ACAS  ++R G+++H      GV
Sbjct: 312 GGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGV 371

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             DL   ++L+ MYAK G I +A  LFD+M+ ++TV++++++ G   +G  +EA  +F +
Sbjct: 372 HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKK 431

Query: 442 MEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M+    + D  +  +++ AC H+  ++ G+     +  +  +   T     ++D+  + G
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCG 490

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           R+  + ++   M +  D+  W  ++     HG
Sbjct: 491 RIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG 521



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 159/333 (47%), Gaps = 11/333 (3%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LSP + +  +        L+ G+ LHA L  SG+         L++ Y +   I  A  L
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FDE+   +   + AL   Y + G  +EA  VF +M    ++ +   + S++ AC HL+ +
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G   H  V+     ++  + ++LIDMY+KCG ++ +++VF+ M  +DIV+ N M++GY
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 517

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR-AKGVEPD 314
              GL  EA  L  E+      P+ VT+  L+S  S SG  +     F +MR   G+ P 
Sbjct: 518 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPR 577

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS---SILPACASAANMRRGKE 371
           +  +  ++  L      DEA++  + M      P  A +    ++L AC    N+  GK+
Sbjct: 578 MEHYICMVDLLSRGGFLDEAYEFIQSM------PLRADVRVWVALLGACRVYKNIDLGKK 631

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           +      +G EG  +    L ++Y+  G   EA
Sbjct: 632 VSRMIQELGPEGTGNF-VLLSNIYSAAGRFDEA 663


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 243/470 (51%), Gaps = 42/470 (8%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYT--ECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           +H QL+  G  R     + L+  Y   E  N+ + R++FD I   N   W  +  AY+  
Sbjct: 29  IHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNS 88

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
              + A+ ++H+M    +  N +  P +LKAC  LS     ++IH+ ++K  FG + +  
Sbjct: 89  NDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYAT 148

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           +SL+ +Y+  G+++ A  +F+++  +DIV                               
Sbjct: 149 NSLLRVYAISGNIQSAHVLFNQLPTRDIV------------------------------- 177

Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
               +WN +I G+ K G+  M  K+FQ M     E +V+SWT++I G V    + EA   
Sbjct: 178 ----SWNIMIDGYIKFGNLDMAYKIFQAMP----EKNVISWTTMIVGFVRIGMHKEALSL 229

Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            ++ML  G  P S T+S  L ACA    + +GK IH       ++ D  +   L DMY K
Sbjct: 230 LQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVK 289

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAV 456
           CG + +A  +F K+ ++    W ++I G A HG   EA++ F QM++     + ++FTA+
Sbjct: 290 CGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAI 349

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           LTAC H GL E G+ LF  M   Y I P  EHY CMVDL+GRAG L EA E I++M  +P
Sbjct: 350 LTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKP 409

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +  +WGALL AC+ H + EL +   K L EL+P+ +   + L  +YA AG
Sbjct: 410 NAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAG 459



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 144/313 (46%), Gaps = 12/313 (3%)

Query: 61  IEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLI 120
           I AH    II R F L   A +  + +Y     +QS  +L  QL    +         +I
Sbjct: 132 IHAH----IIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWN----IMI 183

Query: 121 TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF 180
             Y +  N+  A  +F  +P+ N+  W  +   + R G H+EA+++  +M + G+K +  
Sbjct: 184 DGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSI 243

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
            +   L AC  L  +  G+ IH+ + K+    D  +   L DMY KCG +EKA  VF ++
Sbjct: 244 TLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKL 303

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
            +K + A  A++ G    G   EAL+   ++    + PN +T+  +++  S +G      
Sbjct: 304 EKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGK 363

Query: 301 KLFQLMRA-KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            LF+ M +   ++P +  +  ++  +       EA +  + M  +   P +A   ++L A
Sbjct: 364 SLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVK---PNAAIWGALLNA 420

Query: 360 CASAANMRRGKEI 372
           C    +   GKEI
Sbjct: 421 CQLHKHFELGKEI 433



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 97/198 (48%), Gaps = 18/198 (9%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEA-- 404
           P +    ++L  C+   NM+   +IHG  +  G +   L V + LV  YA+   ++ A  
Sbjct: 8   PNTEQTQALLERCS---NMKELMQIHGQLLKKGTIRNQLTVSTLLVS-YARIELVNLAYT 63

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT--AVLTACCH 462
           R +FD +S  NTV WN+M+   +N    + A+ L++QM     + H S+T   +L AC  
Sbjct: 64  RVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQM-LHNSVPHNSYTFPFLLKACSA 122

Query: 463 VGLVELGQRLF-NMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           +   E  Q++  ++++  + +    E YA   ++ +   +G +  A+ +   + T  D+ 
Sbjct: 123 LSAFEETQQIHAHIIKRGFGL----EVYATNSLLRVYAISGNIQSAHVLFNQLPTR-DIV 177

Query: 520 VWGALLGACKNHGNIELA 537
            W  ++      GN+++A
Sbjct: 178 SWNIMIDGYIKFGNLDMA 195


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 216/355 (60%), Gaps = 9/355 (2%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D    +S+I    K G + +A K+FDEM  KD V+ N ++ GYV+ G   +A  L E + 
Sbjct: 11  DVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMP 70

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + NVV+W+T++SG+ K+GD  M   LF  M  K    ++VSWT ++SG        
Sbjct: 71  ----ERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVK----NLVSWTIIVSGYAVKGLAK 122

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +A  +F++M   G  P   T+ SIL +CA +  +  GK +H     +  +  ++V +ALV
Sbjct: 123 DAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALV 182

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
           DMYAKCG +  A ++F+ MS+++ V+WN M+ G A HG+ ++A++LF+ M +E  + D +
Sbjct: 183 DMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKV 242

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +  AVL AC H G V+ G R FN M+  Y I+P  EHY CMVDLLGR GRL EAY ++++
Sbjct: 243 TLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQS 302

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  EP++ +WG LLGAC+ H  + LAE     L +LEP    N  LL++++A+AG
Sbjct: 303 MPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAG 357



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 73/331 (22%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           + +++ Y +  ++  ARMLFD +P  N+  W  +   YA +G  ++A+  F +M   GLK
Sbjct: 78  STMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLK 137

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            +   + S+L +C     +G G+++H+ + +  +     V ++L+DMY+KCG V++A  V
Sbjct: 138 PDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSV 197

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F+ M +KD+V+ N M+ G    G   +AL                               
Sbjct: 198 FNGMSKKDLVSWNCMLQGLAMHGHGEKAL------------------------------- 226

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               +LF +MR +G  PD V+  +V+   VH    DE    F  M              I
Sbjct: 227 ----QLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERD---------YGI 273

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
           +P            E +GC               +VD+  + G + EA  L   M  E N
Sbjct: 274 VPHI----------EHYGC---------------MVDLLGRGGRLKEAYRLVQSMPVEPN 308

Query: 416 TVTWNSMIFGCANH---GYCDEAIELFNQME 443
            V W +++  C  H   G  +E ++   ++E
Sbjct: 309 VVIWGTLLGACRMHNAVGLAEEVLDCLFKLE 339



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 21/241 (8%)

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS--SILP 358
           +LF++M     E DVVSW S+I GL+      EA   F EM      P    +S  +IL 
Sbjct: 2   RLFKVMD----ERDVVSWNSMIRGLLKVGELSEACKLFDEM------PMKDAVSWNTILD 51

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
               A  M +   +         E ++   S +V  Y K G +  AR LFD+M  +N V+
Sbjct: 52  GYVKAGEMNKAFGLFESM----PERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVS 107

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W  ++ G A  G   +AI  F QMEE   K D  +  ++L +C   GL+ LG+R+   ++
Sbjct: 108 WTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIE 167

Query: 478 E-KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
             +YK      +   +VD+  + G++  A  +   MS + DL  W  +L     HG+ E 
Sbjct: 168 RIRYKCSVNVSN--ALVDMYAKCGQVDRALSVFNGMSKK-DLVSWNCMLQGLAMHGHGEK 224

Query: 537 A 537
           A
Sbjct: 225 A 225



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
           E D+   ++++    K G +SEA  LFD+M  ++ V+WN+++ G    G  ++A  LF  
Sbjct: 9   ERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFES 68

Query: 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK----YKIMPRTEHYACMVDLLG 497
           M ER   + +S++ +++  C  G +E+ + LF+ M  K    + I+     YA    + G
Sbjct: 69  MPER---NVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTII--VSGYA----VKG 119

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN-NM 556
            A     ++E ++    +PD     ++L +C   G + L +     +  +  + + N + 
Sbjct: 120 LAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSN 179

Query: 557 LLTDLYANAG 566
            L D+YA  G
Sbjct: 180 ALVDMYAKCG 189


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 271/521 (52%), Gaps = 57/521 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H   I +GL     ++T L+  Y +C  +  A  +F  +P  ++  W A+   YA 
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203

Query: 157 RGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK------- 207
            G +  AV     M +Q   L+ N   + ++L        +  G  +H+  ++       
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 263

Query: 208 --HSFGTDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
              S  TD  ++ ++L+DMY+KCGS+  A++VFD M  ++ V  +A++ G+V     T+A
Sbjct: 264 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 323

Query: 265 LNLVEE------------------------------------IGTPRVKPNVVTWNTLIS 288
             L +                                     +    V  ++   N+L+S
Sbjct: 324 FLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLS 383

Query: 289 GFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
            ++K+G  DQ +   LF  M  K    D VS+++++SG V N   +EAF  FK+M +   
Sbjct: 384 MYAKAGLIDQAIA--LFDEMAVK----DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 437

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P +AT+ S++PAC+  A ++ G+  HG  I+ G+  +  + +AL+DMYAKCG I  +R 
Sbjct: 438 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 497

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +F+ M  R+ V+WN+MI G   HG   EA  LF +M       D ++F  +L+AC H GL
Sbjct: 498 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 557

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           V  G+  F++M   Y + PR EHY CMVDLL R G L EAYE I++M    D+ VW ALL
Sbjct: 558 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GAC+ + NI+L +  ++ + EL PE   N +LL+++Y+ AG
Sbjct: 618 GACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 658



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 210/452 (46%), Gaps = 57/452 (12%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEA--VTVFHEMHIQGLKQNIFVIPSVLKAC 189
           A  LFD+IP  ++  +  L  AY+       A  + ++  M    +  N +  P  LKAC
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
             L+D   G  IH   +      D FV ++L+DMY KC  +  A  +F  M  +D+VA N
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 250 AMVSGYVQRGLATEALN--LVEEIGTPRVKPN---------------------------- 279
           AM++GY   G+   A+   L  ++   R++PN                            
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 280 -----------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322
                            V+    L+  ++K G  +   ++F  M A+    + V+W+++I
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR----NEVTWSALI 311

Query: 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGV 381
            G V      +AF  FK ML+QG C  S T I+S L ACAS  ++R G+++H      GV
Sbjct: 312 GGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGV 371

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             DL   ++L+ MYAK G I +A  LFD+M+ ++TV++++++ G   +G  +EA  +F +
Sbjct: 372 HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKK 431

Query: 442 MEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
           M+    + D  +  +++ AC H+  ++ G+     +  +  +   T     ++D+  + G
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCG 490

Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           R+  + ++   M +  D+  W  ++     HG
Sbjct: 491 RIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG 521



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 11/333 (3%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LSP + +  +        L+ G+ LHA L  SG+         L++ Y +   I  A  L
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FDE+   +   + AL   Y + G  +EA  VF +M    ++ +   + S++ AC HL+ +
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G   H  V+     ++  + ++LIDMY+KCG ++ +++VF+ M  +DIV+ N M++GY
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 517

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPD 314
              GL  EA  L  E+      P+ VT+  L+S  S SG  +     F +M    G+ P 
Sbjct: 518 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR 577

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS---SILPACASAANMRRGKE 371
           +  +  ++  L      DEA++  + M      P  A +    ++L AC    N+  GK+
Sbjct: 578 MEHYICMVDLLSRGGFLDEAYEFIQSM------PLRADVRVWVALLGACRVYKNIDLGKK 631

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           +      +G EG  +    L ++Y+  G   EA
Sbjct: 632 VSRMIQELGPEGTGNF-VLLSNIYSAAGRFDEA 663


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 180/517 (34%), Positives = 263/517 (50%), Gaps = 54/517 (10%)

Query: 92  RALQSGKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           ++L     LHA +   G L R T +ATKL   Y  C ++ +A+ +FD+I   N   W ++
Sbjct: 36  KSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSM 95

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              YA       A+ ++ +M   G K + F  P VLKACG L     G K+H+LV+    
Sbjct: 96  IRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGL 155

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             D +V +S++ MY K G VE A+ VFD M+ +D+ + N M+SG+V+ G   EA    E 
Sbjct: 156 EEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNG---EARGAFEV 212

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVS------------------------------ 300
            G  R    V    TL++  S  GD + +                               
Sbjct: 213 FGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDM 272

Query: 301 -----------KLFQLMRAKGVEPDVVSWTSVISGLVHNFCND--EAFDTFKEMLSQGFC 347
                      KLF+ +R K    DVVSW S+ISG  +  C D  +A + F  M+  G  
Sbjct: 273 YCNCESVSCARKLFEGLRVK----DVVSWNSLISG--YEKCGDAFQALELFGRMVVVGAV 326

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T+ S+L AC   + +R G  +    +  G   ++ V +AL+ MYA CG +  A  +
Sbjct: 327 PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRV 386

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLV 466
           FD+M E+N      M+ G   HG   EAI +F +M  +    D   FTAVL+AC H GLV
Sbjct: 387 FDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLV 446

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           + G+ +F  M   Y + PR  HY+C+VDLLGRAG L EAY +I+ M  +P+  VW ALL 
Sbjct: 447 DEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLS 506

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           AC+ H N++LA I+A+ L EL P+  +  + L+++YA
Sbjct: 507 ACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYA 543


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 158/493 (32%), Positives = 257/493 (52%), Gaps = 42/493 (8%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARM 134
           S +  ++ + +  R   ++  + +H Q++ +GL      A+KL+ F       ++ +AR 
Sbjct: 14  SESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYART 73

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +FD I + N   W  +   Y+     +EA+ ++H M    +  N +  P +LKAC  +S 
Sbjct: 74  VFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSA 133

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +   ++IH+ ++K  FG++ +  +SL+++YSK G ++ A+ +FD++ ++D          
Sbjct: 134 LEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD---------- 183

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
                                     V+WN++I G++K G+  M  ++F  M     E +
Sbjct: 184 -------------------------TVSWNSMIDGYTKCGEIEMAYEIFNHMP----ERN 214

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           ++SWTS+ISG V      EA + F  M + G    +  + S L ACA    + +GK IH 
Sbjct: 215 IISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHA 274

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
                 +E D  +   L+DMYAKCG + EA  +F KM E+    W +MI G A HG   E
Sbjct: 275 YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGRE 334

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A+E F +M+    + + ++FT +LTAC H GLV   + LF  M+  +   P  EHY CMV
Sbjct: 335 ALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMV 394

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           DLLGRAG L EA E+I+ M  +P+  +WGALL AC  HGN+EL +   K L +++P    
Sbjct: 395 DLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGG 454

Query: 554 NNMLLTDLYANAG 566
             + L  ++A AG
Sbjct: 455 RYIHLASIHAAAG 467



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 180/375 (48%), Gaps = 17/375 (4%)

Query: 86  EIYIRDRAL----QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIP 140
           EIY  +  L    +SG I  A+L+   + +   ++   +I  YT+C  I  A  +F+ +P
Sbjct: 152 EIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMP 211

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           + NI  W ++       G  +EA+ +FH M   G+K +   + S L+AC  L  +  G+ 
Sbjct: 212 ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKW 271

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IH+ + KH    D  +   LIDMY+KCG +E+A +VF +M EK +    AM+SGY   G 
Sbjct: 272 IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR 331

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWT 319
             EAL    ++ T  V+PN +T+  +++  S +G       LF+ M R  G +P +  + 
Sbjct: 332 GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYG 391

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
            ++  L       EA +  + M  +   P +A   ++L AC    N+  GK+I G  ++ 
Sbjct: 392 CMVDLLGRAGLLKEAEELIENMPVK---PNAAIWGALLNACHIHGNLELGKQI-GKILIQ 447

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC---ANHGYCDEAI 436
              G       L  ++A  G  ++A  +  +M E+      S + GC   + +G   E +
Sbjct: 448 VDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV----SKLPGCSVISVNGTAHEFL 503

Query: 437 ELFNQMEERKKLDHL 451
                  + K++DH+
Sbjct: 504 AGDESHPQIKEIDHM 518


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 182/582 (31%), Positives = 288/582 (49%), Gaps = 83/582 (14%)

Query: 64  HYKMPIISRSFHLSPAAYSER-----------IEIYIRDRALQSGKILHAQLIVSGLARL 112
           H K P+   SF   P   S             IE     +++   K + +Q+   GL   
Sbjct: 69  HSKSPVYIPSFFFKPPFSSSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGD 128

Query: 113 TQIATKLITFYTECQ--NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
                KL+ F  +    N+ +A  +F+ +   ++  +  +   YA+RG  ++ + +F ++
Sbjct: 129 RDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQL 188

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
              GL  + F  P VLKA G L D+  GEK+   ++K     D +V +SLIDMY +  +V
Sbjct: 189 REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNV 248

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTW------ 283
           E AKK+FDEM  +D V+ N M+SGYV+     +A+N   E+      KP+  T       
Sbjct: 249 ENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSA 308

Query: 284 ----------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGV---- 311
                                       N L+  ++K G   +   +F  M  K V    
Sbjct: 309 CTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWT 368

Query: 312 ---------------------EP--DVVSWTSVISGLV--HNFCNDEAFDTFKEMLSQGF 346
                                 P  DVV WT++I+G V  H+F  D+A   F+EM  Q  
Sbjct: 369 SMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHF--DDAVALFREMQIQKI 426

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P   T+ ++L  CA    + +GK IHG      +  D+ V +AL++MY+KCG + ++  
Sbjct: 427 KPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLE 486

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGL 465
           +F ++ +++T +W S+I G A +G   EA+ LF++ME    K D ++F  VL+AC H GL
Sbjct: 487 IFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGL 546

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV---WG 522
           VE G+R FN M++ ++I P+ EHY C++DLLGRAG L EA E+I+ +  E    V   +G
Sbjct: 547 VEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYG 606

Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
           ALL AC+ H N+++ E  AK L  +E   ++ + LL ++YA+
Sbjct: 607 ALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYAS 648



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 163/337 (48%), Gaps = 5/337 (1%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDE 138
            ++ RI+  + D   + G +  A+ I   ++    I  T +I+ Y  C ++  AR LFD+
Sbjct: 330 GFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 389

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
            P  ++  W A+   Y +  +  +AV +F EM IQ +K + F + ++L  C  L  +  G
Sbjct: 390 SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQG 449

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           + IH  + ++    D  V ++LI+MYSKCG V+K+ ++F E+ +KD  +  +++ G    
Sbjct: 450 KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMN 509

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVS 317
           G  +EAL L  E+     KP+ +T+  ++S  S  G      + F  M +   +EP V  
Sbjct: 510 GKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEH 569

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           +  VI  L      DEA +  +E+  +          ++L AC    N+  G+ +     
Sbjct: 570 YGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERL--AKK 627

Query: 378 VMGVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +  +E  D  + + L ++YA      +A+ +  KM E
Sbjct: 628 LENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKE 664


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/494 (31%), Positives = 263/494 (53%), Gaps = 40/494 (8%)

Query: 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF 167
           G+ +   + + +I+F  +   I  A+ +FD +P  ++  W ++ G Y + G    A  +F
Sbjct: 160 GMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLF 219

Query: 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227
            EMH  G+K +   + S+++ACG + ++  G+ +H  VL    G D  V++S +DMYSK 
Sbjct: 220 FEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKM 279

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE----------------- 270
           G +E A+ VF +M  +++V+ NAM+SG V+ GL  E+ +L                    
Sbjct: 280 GDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLL 339

Query: 271 --------IGTPRV---------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                   + T ++         + N++    ++  +SK G     + +F  M+ +    
Sbjct: 340 QGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDR---- 395

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           +V++WT+++ GL  N   ++A   F +M  +G    S T  S++ +CA   +++RG+ IH
Sbjct: 396 NVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIH 455

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYC 432
           G    +G   D+   +ALVDMYAKCG I+ A  +F   S  ++ V WNSMI G   HG+ 
Sbjct: 456 GHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHG 515

Query: 433 DEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            +A+ ++++M EE  K +  +F ++L+AC H  LVE G  LFN M+  + I P  +HYAC
Sbjct: 516 YQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYAC 575

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           +VDLL RAGR  EA  +I+ M  +P   V  ALL  C+ H NI L    +  L  L+  +
Sbjct: 576 LVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMN 635

Query: 552 AANNMLLTDLYANA 565
               ++L+++YA A
Sbjct: 636 PGIYIMLSNIYAEA 649



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 148/518 (28%), Positives = 259/518 (50%), Gaps = 57/518 (11%)

Query: 53  KPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
            PL +G F     ++P I  +F LS    S +  I++        K  HAQ+I + L+  
Sbjct: 17  NPLKDGQF----NQLPTIIHNF-LSLLRESSKNLIWV--------KSTHAQIITNSLSTD 63

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
             +ATKL+  Y++ +++  AR +FD+  +       A+   Y + G ++E + +F  M  
Sbjct: 64  QFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRS 123

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
           + L+ +       LKAC    D   G +I S  ++     + FV SS+I    K G + +
Sbjct: 124 RNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGE 183

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS---- 288
           A++VFD M  KD+V  N+++ GYVQ G    A  L  E+    +KP+ +T  +LI     
Sbjct: 184 AQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGG 243

Query: 289 ---------------GFSKSGDQV-------MVSKLFQLMRAKGV-----EPDVVSWTSV 321
                          G     D +       M SK+  +  A+ V       ++VSW ++
Sbjct: 244 IGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAM 303

Query: 322 ISGLVHNFCNDEAFDTFKEML--SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ISG V N    E+FD F  ++  S GF  T  TI S+L  C+  A++  GK +HGCAI  
Sbjct: 304 ISGCVRNGLVGESFDLFHRLVRSSGGFDLT--TIVSLLQGCSQTASLATGKILHGCAI-R 360

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
             E +L + +A+VD+Y+KCG + +A  +F++M +RN +TW +M+ G A +G+ ++A+ LF
Sbjct: 361 SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLF 420

Query: 440 NQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE---KYKIMPRTEHYACMVDL 495
            QM+E     + ++F +++ +C H+G ++ G+ +   +      + I+  T     +VD+
Sbjct: 421 AQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMT----ALVDM 476

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             + G++  A  +    S   D+ +W +++     HG+
Sbjct: 477 YAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGH 514



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 179/389 (46%), Gaps = 38/389 (9%)

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           +  H+ ++ +S  TD FV + L+  YS   S+E A+ VFD+  +   +  NAM+ GY+Q 
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP----- 313
           G   E L L   + +  ++ +  +    +   + S D  M  ++      KG+E      
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVG 168

Query: 314 --------------------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
                                     DVV W S+I G V   C D AF  F EM   G  
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P+  T++S++ AC    N++ GK +HG  + +G+  D+ V ++ VDMY+K G I  AR +
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLV 466
           F KM  RN V+WN+MI GC  +G   E+ +LF+++       D  +  ++L  C     +
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
             G+ L       ++          +VDL  + G L +A  +   M  + ++  W A+L 
Sbjct: 349 ATGKILHGCAIRSFE--SNLILSTAIVDLYSKCGSLKQATFVFNRMK-DRNVITWTAMLV 405

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANN 555
               +G+   AE A +  ++++ E  A N
Sbjct: 406 GLAQNGH---AEDALRLFAQMQEEGIAAN 431


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 271/521 (52%), Gaps = 57/521 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H   I +GL     ++T L+  Y +C  +  A  +F  +P  ++  W A+   YA 
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 157 RGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK------- 207
            G +  AV     M +Q   L+ N   + ++L        +  G  +H+  ++       
Sbjct: 89  HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148

Query: 208 --HSFGTDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
              S  TD  ++ ++L+DMY+KCGS+  A++VFD M  ++ V  +A++ G+V     T+A
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208

Query: 265 LNLVEE------------------------------------IGTPRVKPNVVTWNTLIS 288
             L +                                     +    V  ++   N+L+S
Sbjct: 209 FLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLS 268

Query: 289 GFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
            ++K+G  DQ +   LF  M  K    D VS+++++SG V N   +EAF  FK+M +   
Sbjct: 269 MYAKAGLIDQAIA--LFDEMAVK----DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 322

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P +AT+ S++PAC+  A ++ G+  HG  I+ G+  +  + +AL+DMYAKCG I  +R 
Sbjct: 323 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 382

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +F+ M  R+ V+WN+MI G   HG   EA  LF +M       D ++F  +L+AC H GL
Sbjct: 383 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           V  G+  F++M   Y + PR EHY CMVDLL R G L EAYE I++M    D+ VW ALL
Sbjct: 443 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GAC+ + NI+L +  ++ + EL PE   N +LL+++Y+ AG
Sbjct: 503 GACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 543



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 190/404 (47%), Gaps = 55/404 (13%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N +  P  LKAC  L+D   G  IH   +      D FV ++L+DMY KC  +  A  +F
Sbjct: 9   NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 68

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALN--LVEEIGTPRVKPN---------------- 279
             M  +D+VA NAM++GY   G+   A+   L  ++   R++PN                
Sbjct: 69  ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 128

Query: 280 -----------------------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
                                        V+    L+  ++K G  +   ++F  M A+ 
Sbjct: 129 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR- 187

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRG 369
              + V+W+++I G V      +AF  FK ML+QG C  S T I+S L ACAS  ++R G
Sbjct: 188 ---NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMG 244

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
           +++H      GV  DL   ++L+ MYAK G I +A  LFD+M+ ++TV++++++ G   +
Sbjct: 245 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 304

Query: 430 GYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G  +EA  +F +M+    + D  +  +++ AC H+  ++ G+     +  +  +   T  
Sbjct: 305 GRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSI 363

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              ++D+  + GR+  + ++   M +  D+  W  ++     HG
Sbjct: 364 CNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG 406



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 11/333 (3%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           LSP + +  +        L+ G+ LHA L  SG+         L++ Y +   I  A  L
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FDE+   +   + AL   Y + G  +EA  VF +M    ++ +   + S++ AC HL+ +
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 342

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G   H  V+     ++  + ++LIDMY+KCG ++ +++VF+ M  +DIV+ N M++GY
Sbjct: 343 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 402

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPD 314
              GL  EA  L  E+      P+ VT+  L+S  S SG  +     F +M    G+ P 
Sbjct: 403 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR 462

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS---SILPACASAANMRRGKE 371
           +  +  ++  L      DEA++  + M      P  A +    ++L AC    N+  GK+
Sbjct: 463 MEHYICMVDLLSRGGFLDEAYEFIQSM------PLRADVRVWVALLGACRVYKNIDLGKK 516

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
           +      +G EG  +    L ++Y+  G   EA
Sbjct: 517 VSRMIQELGPEGTGNF-VLLSNIYSAAGRFDEA 548



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 13/199 (6%)

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           ML     P + T    L AC++ A+   G+ IH  AI  G++ DL V +AL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE--LFNQME-ERKKLDHLSFTAVL 457
           + +A  +F  M  R+ V WN+M+ G A+HG    A+   L  QM+  R + +  +  A+L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 458 TACCHVGLVELGQR---------LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
                 G +  G           L      K K+         ++D+  + G L  A  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 509 IKTMSTEPDLFVWGALLGA 527
              M    ++  W AL+G 
Sbjct: 181 FDAMPARNEV-TWSALIGG 198


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 171/522 (32%), Positives = 277/522 (53%), Gaps = 60/522 (11%)

Query: 93  ALQSGKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFD----------EIPK 141
           +L + K++H+ L   G L        +LI  Y++  ++H AR LFD          + P 
Sbjct: 37  SLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPN 96

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT--GE 199
           + +     +  AYA  G   EA+ ++  M   G+  N F  P VLK C   S++G   GE
Sbjct: 97  SFLCN--TMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCA--SELGAVFGE 152

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
            +H  V++  FG+D FV ++L+DMY+KCG +  A +VFD M+ +D+V   AM++ Y Q  
Sbjct: 153 VVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAE 212

Query: 260 LATEALNL----------------------VEEIGTPRVK-------------PNVVTWN 284
              +AL L                      V ++G  R+               +V   N
Sbjct: 213 RPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGN 272

Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
           +++  ++K G+      +F  M     E + +SW S++SG   N    +A   F +M + 
Sbjct: 273 SIVGMYAKCGNVERARLVFDRME----ERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS 328

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
              P   T   ++ AC+   +   G+++H   I   ++ D  +R+A++DMY KCG +  A
Sbjct: 329 ECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTA 388

Query: 405 RTLFD--KMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACC 461
             +F+  ++ ER+  +WN +I G   HG+  EA+ELF++M+ E  + + ++FT++L+AC 
Sbjct: 389 VEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACS 448

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
           H GL++ G++ F  M  K  + P  +HYACMVD+LGRAG L EA+ +IK + + P   VW
Sbjct: 449 HAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVW 507

Query: 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           GALL AC+ HGN EL EIAA +L +LEPE     +L++++YA
Sbjct: 508 GALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYA 549


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 160/524 (30%), Positives = 267/524 (50%), Gaps = 40/524 (7%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L  A+++  +    +   +  G  +H  L+  G      + T L+T Y++C+ +  A  +
Sbjct: 254 LVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENV 313

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FD++       W A+  AY   G   + + ++ +M +  +  +     +VL +C  +   
Sbjct: 314 FDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSY 373

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
             G  IH+ ++K    ++  + S+L+ MYSKCG+ + A  +F+ +  +D+VA  +M+SG+
Sbjct: 374 DFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGF 433

Query: 256 VQRGLATEALNLVEEIGTPRVKP-----------------------------------NV 280
            Q     EAL     +     KP                                   +V
Sbjct: 434 CQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDV 493

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
              ++L+  +SK     M   +F  M  K    ++V+W S+IS    N   D +   F +
Sbjct: 494 FVASSLVDMYSKFNFPKMSGNVFSDMPLK----NLVAWNSIISCYCRNGLPDLSISLFSQ 549

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M   G  P S +I+S+L + +S A +R+GK +HG  I   +  DL + +AL+DMY KCGF
Sbjct: 550 MTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGF 609

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTA 459
           +  A+ +F  M + N VTWN MI GC +HG   +A+ LF++M       D ++F ++LT+
Sbjct: 610 LKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTS 669

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519
           C H G +E G +LF +M  ++ I PR EHY  +VDLLGRAGRL +AY  +K +  EPD  
Sbjct: 670 CNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRS 729

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           +W +LL +C+ H N+EL ++AA  L ++EP   +N + L +LY 
Sbjct: 730 IWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYG 773



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 234/520 (45%), Gaps = 47/520 (9%)

Query: 55  LINGIFIEAHYKMPIIS----RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLA 110
           ++NG F   H K  I      + F + P AYS  I +   D  L   K +H   +     
Sbjct: 127 IVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDGHLGYAKQIHGYSVRKVFY 186

Query: 111 RLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYARRGYHQEAVTVFHE 169
               + + LI  Y  C     A  LF E+  K N+  W  + G +   G  + ++ V+  
Sbjct: 187 GDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLL 246

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
              + +K       S L AC     +  G ++H  ++K  F  D +V +SL+ MYSKC  
Sbjct: 247 AKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKL 306

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP----------- 278
           VE A+ VFD++  K     NAM+S YV  G + + L + +++   ++ P           
Sbjct: 307 VEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSS 366

Query: 279 ------------------------NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
                                   NV   + L++ +SK G+    + +F  ++ +    D
Sbjct: 367 CCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGR----D 422

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           VV+W S+ISG   N    EA + +  M   G  P S  ++S++ AC    N+  G  IHG
Sbjct: 423 VVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHG 482

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
            AI  G+E D+ V S+LVDMY+K  F   +  +F  M  +N V WNS+I     +G  D 
Sbjct: 483 LAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDL 542

Query: 435 AIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           +I LF+QM +     D +S T+VL +   V ++  G+ +   +  + +I    +    ++
Sbjct: 543 SISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQ-RIPSDLQLENALI 601

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           D+  + G L  A  + + M  + +L  W  ++  C +HG+
Sbjct: 602 DMYIKCGFLKYAQHIFQNM-LQTNLVTWNIMIAGCGSHGD 640



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 196/401 (48%), Gaps = 46/401 (11%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVL-KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
           F  PS+LKACG LS++  G+ IHS ++ K  F +D ++ +SLI+ Y KCGS   A KVFD
Sbjct: 50  FTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFD 109

Query: 239 EMVE-----KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS----- 288
           ++ E     +D+   N++V+GY + G   E +     +    V+P+  +   L+      
Sbjct: 110 KLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDGH 169

Query: 289 -GFSKS-----------GDQVMVS----------------KLFQLMRAKGVEPDVVSWTS 320
            G++K            GD  + S                +LF+ +  KG   +VV+W  
Sbjct: 170 LGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKG---NVVAWNV 226

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +I G   N   + + + +    ++     SA+ +S L AC     +  G ++H   + +G
Sbjct: 227 MIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLG 286

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
            E D +V ++L+ MY+KC  + +A  +FD++S + T  WN+MI     +G   + ++++ 
Sbjct: 287 FENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYK 346

Query: 441 QMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           QM+  +   D L+ T VL++CC VG  + G RL +    K  I       + ++ +  + 
Sbjct: 347 QMKVLQIPPDSLTATNVLSSCCLVGSYDFG-RLIHAELVKRPIQSNVALQSALLTMYSKC 405

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELAEI 539
           G   +A  +  T+    D+  WG+++ G C+N   +E  E 
Sbjct: 406 GNSDDANSIFNTIKGR-DVVAWGSMISGFCQNRKYMEALEF 445



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 199/417 (47%), Gaps = 45/417 (10%)

Query: 94  LQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKT-----NIHRW 147
           LQ GK +H+ +I  G       I T LI FY +C +  +A  +FD++P++     ++  W
Sbjct: 65  LQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFW 124

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC-GHLSDIGTGEKIHSLVL 206
            ++   Y R G+ +E +  F  M + G++ + + +  +L A  GHL   G  ++IH   +
Sbjct: 125 NSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDGHL---GYAKQIHGYSV 181

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEAL 265
           +  F  D F+ S LI MY  CG    A ++F E+ +K ++VA N M+ G+ + GL   +L
Sbjct: 182 RKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSL 241

Query: 266 NLVEEIGTPRVKPNVVTWNTLISG-----FSKSGDQ---------------VMVSKLFQL 305
            +        VK    ++ + +S      F   G Q               V  S L   
Sbjct: 242 EVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMY 301

Query: 306 MRAKGVEP-----DVVS------WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
            + K VE      D VS      W ++IS  V N  + +    +K+M      P S T +
Sbjct: 302 SKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTAT 361

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           ++L +C    +   G+ IH   +   ++ ++ ++SAL+ MY+KCG   +A ++F+ +  R
Sbjct: 362 NVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGR 421

Query: 415 NTVTWNSMIFG-CANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELG 469
           + V W SMI G C N  Y  EA+E +N M    +K D     +V++AC  +  V LG
Sbjct: 422 DVVAWGSMISGFCQNRKYM-EALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLG 477



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 12/192 (6%)

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTL 407
           T  T  S+L AC   +N++ GK IH   I  G    D ++ ++L++ Y KCG    A  +
Sbjct: 48  TRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKV 107

Query: 408 FDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC- 460
           FDK+ E     ++   WNS++ G    G+  E I  F +M+    + D  S   +L A  
Sbjct: 108 FDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASD 167

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
            H+G  +  Q     +++ +   P  E  + ++ +    GR  +A+ + K +  + ++  
Sbjct: 168 GHLGYAK--QIHGYSVRKVFYGDPFLE--SGLIYMYFSCGRPLDAWRLFKELEDKGNVVA 223

Query: 521 WGALLGACKNHG 532
           W  ++G    +G
Sbjct: 224 WNVMIGGFGENG 235


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/475 (32%), Positives = 259/475 (54%), Gaps = 41/475 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATK-LITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ++ G +  A+LI   + +   +A+  +I    +   +  A  LF+E+ + ++  W AL  
Sbjct: 218 VKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALIS 277

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G ++EA+ +F EM+  G++ +  V+ SVL AC HLS + TG+ IH LV++    +
Sbjct: 278 GYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES 337

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
              + ++LI MYS  G +  A+K+F+                                 G
Sbjct: 338 YVNLQNALIHMYSGSGEIMDAQKLFN---------------------------------G 364

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
           +  +  + ++WN++ISG  K G       LF +M     E D+VSW++VISG   + C  
Sbjct: 365 SHNL--DQISWNSMISGCMKCGSVEKARALFDVMP----EKDIVSWSAVISGYAQHDCFS 418

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           E    F EM      P    + S++ AC   A + +GK +H      G++ ++ + + L+
Sbjct: 419 ETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLL 478

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
           DMY KCG +  A  +F+ M E+   +WN++I G A +G  + ++++F++M+    + + +
Sbjct: 479 DMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEI 538

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  VL AC H+GLV+ G+  F  M EK+ I P  +HY CMVDLLGRAG L EA ++I++
Sbjct: 539 TFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES 598

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M   PD+  WGALLGACK HG+ E+ E   + L EL+P+    ++LL++++A+ G
Sbjct: 599 MPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKG 653



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 248/479 (51%), Gaps = 53/479 (11%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQ--NIHHARMLFDEIPKTNIHRWIALTG 152
           Q  +IL +Q+I++G    T  A++L+ F T+     + ++  +FD I  +N   W  +  
Sbjct: 56  QFNRIL-SQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMR 114

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG-HLSDIGTGEKIHSLVLKHSFG 211
           AY +    ++A+ ++  M    +  + +  P V++AC   L + G G++IH  VLK  F 
Sbjct: 115 AYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFG-GKEIHDHVLKVGFD 173

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D +V ++LI+MY+ CG++  A+K+FDE    D V+ N++++GYV++G   EA  + +++
Sbjct: 174 SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQM 233

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
                + N+V  N++I    K G  +   KLF  M     E D+VSW+++ISG   N   
Sbjct: 234 P----QRNIVASNSMIVLLGKMGQVMEAWKLFNEMD----EKDMVSWSALISGYEQNGMY 285

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
           +EA   F EM + G       + S+L ACA  + ++ GK IHG  I MG+E  +++++AL
Sbjct: 286 EEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNAL 345

Query: 392 VDMYA-------------------------------KCGFISEARTLFDKMSERNTVTWN 420
           + MY+                               KCG + +AR LFD M E++ V+W+
Sbjct: 346 IHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWS 405

Query: 421 SMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE- 478
           ++I G A H    E + LF++M+  + + D     +V++AC H+  ++ G+ +   +++ 
Sbjct: 406 AVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN 465

Query: 479 --KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             K  ++  T     ++D+  + G +  A E+   M  E  +  W AL+     +G +E
Sbjct: 466 GLKVNVILGT----TLLDMYMKCGCVENALEVFNGME-EKGVSSWNALIIGLAVNGLVE 519



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 7/241 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +HA +  +GL     + T L+  Y +C  + +A  +F+ + +  +  W AL  
Sbjct: 451 ALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALII 510

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE-KIHSLVLKHSFG 211
             A  G  + ++ +F EM   G+  N      VL AC H+  +  G     S++ KH   
Sbjct: 511 GLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIE 570

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +      ++D+  + G + +A+K+ + M     VA    + G  ++   TE   + E +
Sbjct: 571 PNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE---MGERV 627

Query: 272 GTP--RVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
           G     ++P+   ++ L+S  F+  GD   V ++  +M+ +GV           +G+VH 
Sbjct: 628 GRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHE 687

Query: 329 F 329
           F
Sbjct: 688 F 688


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 268/536 (50%), Gaps = 64/536 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ-NIHHARMLFDEIPKTNIHRWIALTG 152
           +++ K LHA  IVSGL       +K++  Y   Q ++  A  +FD+I       W  L  
Sbjct: 1   MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 60

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A+     +A+  + +    G+  +    P +LKAC  ++ +  GE++H+ + K    +
Sbjct: 61  GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 120

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D FV +SLI +Y+ CG++  A+ VFDEMV KD+V+ N+++ GY Q     + L L + + 
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
              VK + VT                                    NTL+  F + G   
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240

Query: 298 MVSKLFQLMRAKGV---------------------------EPDVVSWTSVISGLVHNFC 330
              K+F  M+ + +                           + D++SW+S+ISG      
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 300

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             +A + F++M      P +  I+S++ +CA    +  GK +H       ++ D  + ++
Sbjct: 301 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENS 360

Query: 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLD 449
           L+DMY KCG   EA  +F +M E++T++WNS+I G AN+G+  E++ LF  M  E  + +
Sbjct: 361 LIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPN 420

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
            ++F  VL AC +  LVE G   F  M+  Y + P+ +HY C+VDLLGRAG+L +A   I
Sbjct: 421 GVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFI 480

Query: 510 KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             M  +PD  VW  LLG+C  HG++ +AEI  K L+ELEP ++ N  LL++ YA+A
Sbjct: 481 TEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASA 536



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 112/199 (56%), Gaps = 4/199 (2%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           ++ + R   LQS + +   + V  +  +      +I  Y + Q+I  AR +FD+IPK ++
Sbjct: 230 VDYFGRRGQLQSAEKVFFNMKVRNIVTMN----AMIAAYAKGQDIVSARKIFDQIPKKDL 285

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W ++   Y++  +  +A+ +F +M    +K +  VI SV+ +C HL  +  G+ +H  
Sbjct: 286 ISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEY 345

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V +++   D  + +SLIDMY KCGS ++A +VF EM EKD ++ N+++ G    G   E+
Sbjct: 346 VRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKES 405

Query: 265 LNLVEEIGTPRVKPNVVTW 283
           LNL + + T   +PN VT+
Sbjct: 406 LNLFQAMLTEGFRPNGVTF 424


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 271/521 (52%), Gaps = 57/521 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H   I +GL     ++T L+  Y +C  +  A  +F  +P  ++  W A+   YA 
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 157 RGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK------- 207
            G +  AV     M +Q   L+ N   + ++L        +  G  +H+  ++       
Sbjct: 89  HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148

Query: 208 --HSFGTDAFVV-SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
              S  TD  ++ ++L+DMY+KCGS+  A++VFD M  ++ V  +A++ G+V     T+A
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208

Query: 265 LNLVEE------------------------------------IGTPRVKPNVVTWNTLIS 288
             L +                                     +    V  ++   N+L+S
Sbjct: 209 FLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLS 268

Query: 289 GFSKSG--DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
            ++K+G  DQ +   LF  M  K    D VS+++++SG V N   +EAF  FK+M +   
Sbjct: 269 MYAKAGLIDQAIA--LFDEMAVK----DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 322

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P +AT+ S++PAC+  A ++ G+  HG  I+ G+  +  + +AL+DMYAKCG I  +R 
Sbjct: 323 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 382

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
           +F+ M  R+ V+WN+MI G   HG   EA  LF +M       D ++F  +L+AC H GL
Sbjct: 383 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           V  G+  F++M   Y + PR EHY CMVDLL R G L EAYE I++M    D+ VW ALL
Sbjct: 443 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           GAC+ + NI+L +  ++ + EL PE   N +LL+++Y+ AG
Sbjct: 503 GACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 543



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 190/404 (47%), Gaps = 55/404 (13%)

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           N +  P  LKAC  L+D   G  IH   +      D FV ++L+DMY KC  +  A  +F
Sbjct: 9   NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 68

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALN--LVEEIGTPRVKPN---------------- 279
             M  +D+VA NAM++GY   G+   A+   L  ++   R++PN                
Sbjct: 69  ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 128

Query: 280 -----------------------------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310
                                        V+    L+  ++K G  +   ++F  M A+ 
Sbjct: 129 LAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR- 187

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRG 369
              + V+W+++I G V      +AF  FK ML+QG C  S T I+S L ACAS  ++R G
Sbjct: 188 ---NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMG 244

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
           +++H      GV  DL   ++L+ MYAK G I +A  LFD+M+ ++TV++++++ G   +
Sbjct: 245 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 304

Query: 430 GYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G  +EA  +F +M+    + D  +  +++ AC H+  ++ G+     +  +  +   T  
Sbjct: 305 GRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSI 363

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              ++D+  + GR+  + ++   M +  D+  W  ++     HG
Sbjct: 364 CNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG 406



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 190/425 (44%), Gaps = 41/425 (9%)

Query: 4   RSCLFPIRDKPFQFT------LSMNDFYS-------IRRIYFALLSGTQLVLSCSKSASD 50
           R+CL P R+   + T       ++ D Y+        RR++ A+ +  ++  S       
Sbjct: 141 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS------- 193

Query: 51  AGKPLINGIFIEAH-------YKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQ 103
               LI G  + +        +K  +      LSP + +  +        L+ G+ LHA 
Sbjct: 194 ---ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 250

Query: 104 LIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA 163
           L  SG+         L++ Y +   I  A  LFDE+   +   + AL   Y + G  +EA
Sbjct: 251 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 310

Query: 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223
             VF +M    ++ +   + S++ AC HL+ +  G   H  V+     ++  + ++LIDM
Sbjct: 311 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDM 370

Query: 224 YSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
           Y+KCG ++ +++VF+ M  +DIV+ N M++GY   GL  EA  L  E+      P+ VT+
Sbjct: 371 YAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTF 430

Query: 284 NTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
             L+S  S SG  +     F +M    G+ P +  +  ++  L      DEA++  + M 
Sbjct: 431 ICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSM- 489

Query: 343 SQGFCPTSATIS---SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
                P  A +    ++L AC    N+  GK++      +G EG  +    L ++Y+  G
Sbjct: 490 -----PLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNF-VLLSNIYSAAG 543

Query: 400 FISEA 404
              EA
Sbjct: 544 RFDEA 548



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 13/199 (6%)

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           ML     P + T    L AC++ A+   G+ IH  AI  G++ DL V +AL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE--LFNQME-ERKKLDHLSFTAVL 457
           + +A  +F  M  R+ V WN+M+ G A+HG    A+   L  QM+  R + +  +  A+L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 458 TACCHVGLVELGQR---------LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
                 G +  G           L      K K+         ++D+  + G L  A  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 509 IKTMSTEPDLFVWGALLGA 527
              M    ++  W AL+G 
Sbjct: 181 FDAMPARNEV-TWSALIGG 198


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/504 (31%), Positives = 259/504 (51%), Gaps = 71/504 (14%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++  GL+    +A  ++  Y +C +   AR +F+ +   ++  W  +   Y  
Sbjct: 366 GRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTH 425

Query: 157 RGYHQEAVTVFHEMH----------IQGLKQN----------------------IFVIPS 184
           +G  + AV++F  M           I G  QN                       F + S
Sbjct: 426 QGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTS 485

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           VL AC +L  +  G+++HS +L+      + ++++LI  Y+K GSVE A+++ D+ V  D
Sbjct: 486 VLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVAD 545

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +                                 NV+++  L+ G+ K GD     ++F 
Sbjct: 546 L---------------------------------NVISFTALLEGYVKLGDTKQAREIFD 572

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           +M  +    DV++WT++I G   N  NDEA + F+ M+  G  P S T++++L ACAS A
Sbjct: 573 IMNNR----DVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLA 628

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTWNSMI 423
            +  GK+IH  AI    E  + V +A++ +YA+ G +  AR +FD++  R  T+TW SMI
Sbjct: 629 YLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMI 688

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
              A HG  ++A+ LF +M     K DH+++  VL+AC H G V+ G+R +  MQ ++ I
Sbjct: 689 VAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGI 748

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           +P+  HYACMVDL  RAG L EA+E I+ M   PD  VWG+LL AC+   N +LAE+AA 
Sbjct: 749 VPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAG 808

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L  ++P ++     L ++Y+  G
Sbjct: 809 KLLSIDPHNSGAYSALANVYSACG 832



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 214/433 (49%), Gaps = 29/433 (6%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L++ Y +   +  A ++F E+P  +   W  +     R G   +AV  F +M  +G   +
Sbjct: 287 LLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPS 346

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
            F + +VL +C  +   G G K+H  V+K    +   V +S++ MY KCG  E A+ VF+
Sbjct: 347 QFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFE 406

Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
            M  + + + N MVS Y  +G    A+++ E +    V+ ++V+WNT+I+G++++G   M
Sbjct: 407 RMQVRSVSSWNVMVSLYTHQGRMELAVSMFENM----VERSIVSWNTIIAGYNQNGLDGM 462

Query: 299 VSKLF-QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM----LSQGFCPTSATI 353
             K F +++ A  +EPD  + TSV+S       N       K+M    L  G   +S  +
Sbjct: 463 ALKFFSRMLSASSMEPDAFTVTSVLSACA----NLRMLKMGKQMHSYILRTGMPCSSQIM 518

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS--ALVDMYAKCGFISEARTLFDKM 411
           ++++   A + ++   + I   A+V     DL+V S  AL++ Y K G   +AR +FD M
Sbjct: 519 NALISTYAKSGSVETARRIMDQAVV----ADLNVISFTALLEGYVKLGDTKQAREIFDIM 574

Query: 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQ 470
           + R+ + W +MI G   +G  DEA+ELF  M     + +  +  AVL+AC  +  ++ G+
Sbjct: 575 NNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGK 634

Query: 471 RL----FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
           ++       +QE+   +        ++ +  R+G +  A  +   +    +   W +++ 
Sbjct: 635 QIHCKAIRSLQEQSVSVSNA-----IITVYARSGSVPLARRVFDQICWRKETITWTSMIV 689

Query: 527 ACKNHGNIELAEI 539
           A   HG  E A +
Sbjct: 690 AMAQHGLGEQAVV 702



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 149/346 (43%), Gaps = 68/346 (19%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +L+ C    +   G  IH+  +K       ++ ++L+  Y+  G                
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVG---------------- 258

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
                      V RG   EA  L ++I  P  + N  TWN+L+S ++KSG       +F 
Sbjct: 259 -----------VSRGCFREARCLFDDI--PYARRNAFTWNSLLSLYAKSGRLPDAHVVFA 305

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M  +    D VSWT +I GL  +    +A  TF +M+S+GF P+  T++++L +CA+  
Sbjct: 306 EMPDR----DAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAME 361

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
               G+++H   + +G+   + V ++++ MY KCG    AR +F++M  R+  +WN M+ 
Sbjct: 362 ACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVS 421

Query: 425 GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
              + G  + A+ +F  M ER     +S+  ++      GL  +  + F+          
Sbjct: 422 LYTHQGRMELAVSMFENMVERSI---VSWNTIIAGYNQNGLDGMALKFFS---------- 468

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
                                  M+   S EPD F   ++L AC N
Sbjct: 469 ----------------------RMLSASSMEPDAFTVTSVLSACAN 492



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 125/272 (45%), Gaps = 20/272 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           L  GK +H + I S   +   ++  +IT Y    ++  AR +FD+I  +     W ++  
Sbjct: 630 LDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIV 689

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH-SLVLKHSFG 211
           A A+ G  ++AV +F EM   G+K +      VL AC H   +  G++ +  +  +H   
Sbjct: 690 AMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIV 749

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                 + ++D++++ G + +A +    M V  D V   ++++    R  A  A     +
Sbjct: 750 PQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGK 809

Query: 271 IGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHN 328
           + +  + P N   ++ L + +S  G     +++++L + KGV+ +   SWT V  G VH 
Sbjct: 810 LLS--IDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHV-RGKVHV 866

Query: 329 FCNDE------------AFDTFKEMLSQGFCP 348
           F  D+            A + ++E+   GF P
Sbjct: 867 FGADDVLHPQRDSIYRKAAEMWEEIKKAGFVP 898


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 268/491 (54%), Gaps = 52/491 (10%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH------- 171
           +I+ YT    +  A  LFD + + N+  W A+   + + G  + A+  F  M        
Sbjct: 168 MISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASL 227

Query: 172 ---IQGLKQNIFVIPSV-LKACGHLSDIGTGEKIHSL-VLKHSFGTDAFV---------- 216
              + GL QN  +  +  +       D   G+ +H+  +L   +G +  V          
Sbjct: 228 SALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQI 287

Query: 217 -------------------VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
                               +S+I  Y K   +  A+ +FD+M E+D ++ N M+SGYV+
Sbjct: 288 PFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVR 347

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
                EA  L +E+  P    + +TWN++ISGF++ G+  +   LF  +  K    ++VS
Sbjct: 348 MSDMEEAWMLFQEMPNP----DTLTWNSMISGFAQKGNLELARALFATIPQK----NLVS 399

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           W S+I+G  +N     A + +++ML QG  P   T+SS+L  C+  A +  G +IH   I
Sbjct: 400 WNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQ-QI 458

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAI 436
              V  D+ + ++L+ MY++CG I EART+FD++  ++  ++WN+MI G A HG+  +A+
Sbjct: 459 TKTVIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADAL 518

Query: 437 ELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
           ELF  M+  K +  +++F +VL AC H G V+ G+  F  M  ++ I PR EH+A +VD+
Sbjct: 519 ELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDI 578

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           +GR G+L EA ++I +M  EPD  VWGALLGAC+ H N+ELA +AA+ L +LEPES+A  
Sbjct: 579 VGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPY 638

Query: 556 MLLTDLYANAG 566
           +LL ++YA+ G
Sbjct: 639 VLLHNMYADVG 649



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 200/470 (42%), Gaps = 80/470 (17%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
            K I+       I+ AR LFD +P+ NI  W ++   Y RR    +A  +F EM      
Sbjct: 71  NKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEM------ 124

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS--LIDMYSKCGS--VEK 232
                                               D  VVS   +I  Y  C    VE+
Sbjct: 125 -----------------------------------PDRDVVSWNLMISGYVSCQGRWVEE 149

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
            + +FDEM E+D V+ N M+SGY + G   EAL L + +     + NVV+WN +++GF +
Sbjct: 150 GRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQ----ERNVVSWNAMVTGFLQ 205

Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA----FDTFKEMLSQGFCP 348
           +GD     + F  M     E D  S +++++GL+ N   DEA      + ++   +G   
Sbjct: 206 NGDVERAIEFFMRM----PERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLV 261

Query: 349 TSATISSILPACASAANMRRGKEIH--------GCAIVMGVEGDLHVRSALVDMYAKCGF 400
            +  I  +L        + + +++         G       E ++   ++++  Y K   
Sbjct: 262 HAYNI--LLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARD 319

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460
           I  AR LFD+M ER+T++WN+MI G       +EA  LF +M      D L++ ++++  
Sbjct: 320 IFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM---PNPDTLTWNSMISGF 376

Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM---STEPD 517
              G +EL + LF  + +K  +      +  M+      G    A E+ + M     +PD
Sbjct: 377 AQKGNLELARALFATIPQKNLV-----SWNSMIAGYENNGDYKGATELYRQMLLQGEKPD 431

Query: 518 LFVWGALLGACKNHGNIELA-EIAAKHLSELEPESAANNMLLTDLYANAG 566
                ++L  C     + L  +I  +    + P+   NN L+T +Y+  G
Sbjct: 432 RHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLIT-MYSRCG 480



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 178/378 (47%), Gaps = 45/378 (11%)

Query: 74  FHLSPAAYSERIEIYIRDRALQSGKILHAQL----------IVSGLARLTQIA------- 116
           F  +  +++  I  Y++ R + S ++L  Q+          ++SG  R++ +        
Sbjct: 300 FERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQ 359

Query: 117 ----------TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTV 166
                       +I+ + +  N+  AR LF  IP+ N+  W ++   Y   G ++ A  +
Sbjct: 360 EMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATEL 419

Query: 167 FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
           + +M +QG K +   + SVL  C   + +  G +IH  + K +   D  + +SLI MYS+
Sbjct: 420 YRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITK-TVIPDIPINNSLITMYSR 478

Query: 227 CGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNT 285
           CG++ +A+ +FDE+ ++K++++ NAM+ GY   G A +AL L E +   +V+P  +T+ +
Sbjct: 479 CGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFIS 538

Query: 286 LI-----SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
           ++     +GF K G     S   +     G+EP +  + S++  +  +   +EA D    
Sbjct: 539 VLNACAHAGFVKEGRMHFKSMACEF----GIEPRIEHFASLVDIVGRHGQLEEAMDLINS 594

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV-DMYAKCG 399
           M    F P  A   ++L AC    N+   +       +M +E +      L+ +MYA  G
Sbjct: 595 M---PFEPDKAVWGALLGACRVHNNVELARV--AAEALMKLEPESSAPYVLLHNMYADVG 649

Query: 400 FISEARTLFDKMSERNTV 417
               A T    M ERN +
Sbjct: 650 QWDNA-TEMRMMMERNNI 666



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 169/374 (45%), Gaps = 60/374 (16%)

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALN 266
           K+S   D +  +  I    + G + +A+ +FD M +++IV  N+M++GYV+R    +A  
Sbjct: 60  KNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARK 119

Query: 267 LVEEIGTPRV-----------------------------KPNVVTWNTLISGFSKSGDQV 297
           L +E+    V                             + + V+WNT+ISG+++SG   
Sbjct: 120 LFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMD 179

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              +LF  M+    E +VVSW ++++G + N   + A + F  M  +     SA++S+++
Sbjct: 180 EALQLFDSMQ----ERNVVSWNAMVTGFLQNGDVERAIEFFMRMPER----DSASLSALV 231

Query: 358 PACASAANMRRGKEIHGCAIVMGVE-GDL-HVRSALVDMYAKCGFISEARTLFDKMS--- 412
                   +   K I   +     + GDL H  + L+  Y + G + +AR LFD++    
Sbjct: 232 AGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYD 291

Query: 413 ---------ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463
                    ERN V+WNSMI           A  LF+QM+ER   D +S+  +++    +
Sbjct: 292 GGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKER---DTISWNTMISGYVRM 348

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
             +E    LF  M       P T  +  M+    + G L  A  +  T+  + +L  W +
Sbjct: 349 SDMEEAWMLFQEMPN-----PDTLTWNSMISGFAQKGNLELARALFATI-PQKNLVSWNS 402

Query: 524 LLGACKNHGNIELA 537
           ++   +N+G+ + A
Sbjct: 403 MIAGYENNGDYKGA 416


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 223/374 (59%), Gaps = 12/374 (3%)

Query: 196 GTGEKIHSLVLKHSFGT-DAFVVSSLIDMYSK--CGSVEKAKKVFDEMVEKDIVAMNAMV 252
           G G  +H+  L+  F   D FV ++L++MY+K   G +  A+  FDE   +D+   N M+
Sbjct: 64  GLGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVML 123

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
           + YV RG   EA  + + +       ++V+WNT+I G++  GD  M  ++F   R +   
Sbjct: 124 AAYVARGEVAEARKVFDGMSGR----DLVSWNTMIHGYAVRGDVGMAREIFDGTRDR--- 176

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            D  SW+S+IS      C+ EA + ++EM   G  P   ++ S+L AC++   +  G E+
Sbjct: 177 -DAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H       VE D+ + +ALVDMYAKCG I  +  +F  M  ++ +TW+SMI G ANHG  
Sbjct: 236 HRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLG 295

Query: 433 DEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
            +A+ LF++M  +  + + ++F  VL AC HVGLV  G++ F+ M + + ++PR EHY C
Sbjct: 296 HDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGC 355

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           MVDLLGRAG + EA E+I++M+ +PD  +W  LLGAC+ H N+E+AE A   L  L+P +
Sbjct: 356 MVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLA 415

Query: 552 AANNMLLTDLYANA 565
             + +LL+++YA A
Sbjct: 416 DGHYVLLSNIYAQA 429



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 181/390 (46%), Gaps = 24/390 (6%)

Query: 76  LSPAAYSE--RIEIYIRDRALQS----GKILHAQLIVSGLARLTQIA-TKLITFYTECQN 128
           L+ AA+ E  R ++++ +  L +    G++  A+ +  G++    ++   +I  Y    +
Sbjct: 103 LARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGD 162

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           +  AR +FD     +   W ++  AYA+    +EA+ ++ EM + G+  +   + SVL A
Sbjct: 163 VGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSA 222

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
           C  +  +  G ++H  V  +    D  + ++L+DMY+KCG +E + KVF  M  KD++  
Sbjct: 223 CSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTW 282

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR- 307
           ++M+ G    GL  +AL+L  E+ +  ++PN +T+  ++   +  G      K F  M  
Sbjct: 283 SSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSD 342

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
             GV P +  +  ++  L      +EA +  + M    F P      ++L AC    N+ 
Sbjct: 343 VHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMT---FKPDPIIWRTLLGACRIHKNVE 399

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF---ISEARTL-----FDKMSERNTVTW 419
             +E      V+    D H    L ++YA+      ++E R         ++  R+++ W
Sbjct: 400 IAEEAMAKLKVLDPLADGHY-VLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEW 458

Query: 420 NSMIF----GCANHGYCDEAIELFNQMEER 445
            + +     G  +H   +E  ++  +M +R
Sbjct: 459 ENTVHEFVSGDRSHPRIEEIYKMLEEMMDR 488



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 163/365 (44%), Gaps = 24/365 (6%)

Query: 97  GKILHAQLIVSGLARLTQ-IATKLITFY--TECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           G  LHA+ + SG A     + T L+  Y  T    I  AR  FDE P+ ++     +  A
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAA 125

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y  RG   EA  VF  M      +++    +++       D+G   +I       +   D
Sbjct: 126 YVARGEVAEARKVFDGMS----GRDLVSWNTMIHGYAVRGDVGMAREI----FDGTRDRD 177

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           AF  SS+I  Y+K    ++A +++ EM    V  D ++M +++S     G       +  
Sbjct: 178 AFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHR 237

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            + + RV+ ++     L+  ++K GD     K+F  M  K    DV++W+S+I GL ++ 
Sbjct: 238 FVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVK----DVLTWSSMIIGLANHG 293

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE-IHGCAIVMGVEGDLHVR 388
              +A   F EM+SQG  P   T   +L AC     +  GK+     + V GV   +   
Sbjct: 294 LGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHY 353

Query: 389 SALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
             +VD+  + G + EA  L   M+ + + + W +++  C  H   + A E    M + K 
Sbjct: 354 GCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEE---AMAKLKV 410

Query: 448 LDHLS 452
           LD L+
Sbjct: 411 LDPLA 415


>gi|449462669|ref|XP_004149063.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial-like [Cucumis sativus]
          Length = 523

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 161/492 (32%), Positives = 257/492 (52%), Gaps = 45/492 (9%)

Query: 82  SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK 141
           S  ++ YI       G  +HA ++ +G    T I+ KL+  + +C+++  AR  FD +P+
Sbjct: 38  SSALQHYINSDDPSHGLKIHAHILKTGFIPNTNISIKLLILHLKCKSLKFARQAFDALPQ 97

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG----HLSDIGT 197
             +  +  + G Y + G   E++ +  E+   G K + F    +LKA             
Sbjct: 98  KTLSAYNYMIGGYMKMGEVPESLPLVRELICSGEKPDGFTFSMLLKASTLAREDFVPRSL 157

Query: 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257
           G  +H+ +LK +   D  + ++L+D Y K G V  A+ VFD M++K+++   +M+SGY+ 
Sbjct: 158 GRVVHAQILKSNVSPDDVLYTALVDSYIKNGDVYIARMVFDLMLKKNVICSTSMISGYMN 217

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
           RGL  +A    EEI    V+ ++V +N +I G+SK+ +    S  F +            
Sbjct: 218 RGLVKDA----EEIFRKTVEKDIVVFNAMIEGYSKTHEHAKKSLEFYI------------ 261

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
                                 +M    F P  +T SS++ AC+  A    G++I    +
Sbjct: 262 ----------------------DMQRLCFSPNISTFSSVIGACSVLAAFEAGQQIQCQLM 299

Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
                 D+ + SAL+DMY+KCG   +AR +FD+M ERN  +W SMI G   +GY  EA+E
Sbjct: 300 KTKFFTDIRMGSALIDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALE 359

Query: 438 LFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
           LF  M+E+ ++  + ++F + L+AC H GLVE G  +F  M+  Y + P+ EHYACMVDL
Sbjct: 360 LFCIMQEKHQIQPNFVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDL 419

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           LGRAG L +A+E    M   P+  VW ALL + K HGN+E+A +AA  L +L  +S    
Sbjct: 420 LGRAGSLLQAWEFAMQMPETPNSDVWAALLSSAKLHGNVEIACMAADELFKLNADSRPGA 479

Query: 556 ML-LTDLYANAG 566
            + L++ +A AG
Sbjct: 480 YVALSNTFAEAG 491



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           TS ++SS L    ++ +   G +IH   +  G   + ++   L+ ++ KC  +  AR  F
Sbjct: 33  TSTSLSSALQHYINSDDPSHGLKIHAHILKTGFIPNTNISIKLLILHLKCKSLKFARQAF 92

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTA 459
           D + ++    +N MI G    G   E++ L  ++    +K D  +F+ +L A
Sbjct: 93  DALPQKTLSAYNYMIGGYMKMGEVPESLPLVRELICSGEKPDGFTFSMLLKA 144


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 163/508 (32%), Positives = 265/508 (52%), Gaps = 38/508 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A+  G  +HA ++  G      +   LI+  ++   +  AR++FD +   +   W ++  
Sbjct: 218 AVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIA 277

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +   G   EA   F+ M + G K       SV+K+C  L ++G    +H   LK    T
Sbjct: 278 GHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLST 337

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +  V+++L+   +KC  ++ A  +F  M   + +V+  AM+SGY+Q G   +A+NL   +
Sbjct: 338 NQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLM 397

Query: 272 GTPRVKPNVVTWNT-------------------------------LISGFSKSGDQVMVS 300
               VKPN  T++T                               L+  F K G+     
Sbjct: 398 RREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAV 457

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           K+F+L+  K    DV++W+++++G       +EA   F ++  +G  P   T  SI+ AC
Sbjct: 458 KVFELIETK----DVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINAC 513

Query: 361 -ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            A  A++ +GK+ H  AI + +   L V S+LV +YAK G I  A  +F +  ER+ V+W
Sbjct: 514 TAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSW 573

Query: 420 NSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           NSMI G A HG   +A+E+F +M++R  ++D ++F  V++AC H GLV  GQ  FN+M  
Sbjct: 574 NSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMIN 633

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + I P  EHY+CM+DL  RAG L +A ++I  M   P   VW  +L A + H NIEL +
Sbjct: 634 DHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGK 693

Query: 539 IAAKHLSELEPESAANNMLLTDLYANAG 566
           +AA+ +  LEP+ +A  +LL+++YA AG
Sbjct: 694 LAAEKIISLEPQHSAAYVLLSNIYAAAG 721



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 223/480 (46%), Gaps = 50/480 (10%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H Q +  GL     +   L+  YT+  N+   R +FDE+   ++  W +L   Y+ 
Sbjct: 121 GEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSW 180

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
             ++ +   +F  M ++G + + + + +V+ A  +   +  G +IH+LV+K  F T+  V
Sbjct: 181 NRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLV 240

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SLI M SK G +  A+ VFD M  KD V+ N+M++G+V  G   EA      +     
Sbjct: 241 CNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGA 300

Query: 277 KPNVVTW---------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVE--- 312
           KP   T+                      TL SG S +   V+ + +  L + K ++   
Sbjct: 301 KPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLS-TNQNVLTALMVALTKCKEIDDAF 359

Query: 313 ---------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
                      VVSWT++ISG + N   D+A + F  M  +G  P   T S+IL    + 
Sbjct: 360 SLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL----TV 415

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
            +     EIH   I    E    V +AL+D + K G IS+A  +F+ +  ++ + W++M+
Sbjct: 416 QHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAML 475

Query: 424 FGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTAC-CHVGLVELGQRLFNMMQEKYK 481
            G A  G  +EA ++F+Q+  E  K +  +F +++ AC      VE G++        Y 
Sbjct: 476 AGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQF-----HAYA 530

Query: 482 IMPRTEHYAC----MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           I  R  +  C    +V L  + G +  A+E+ K    E DL  W +++     HG  + A
Sbjct: 531 IKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQAKKA 589



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 217/457 (47%), Gaps = 42/457 (9%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191
           A+ LFD+ P  ++ +   L   Y+R    QEA+ +F  ++  GL  + + +  VL  C  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
             +   GE++H   +K        V +SL+DMY+K G+V   ++VFDEM ++D+V+ N++
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG----------------- 294
           ++GY       +   L   +     +P+  T +T+I+  +  G                 
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 295 --DQVMVSKLFQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
             ++++ + L  ++   G+              D VSW S+I+G V N  + EAF+TF  
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNN 294

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M   G  PT AT +S++ +CAS   +   + +H   +  G+  + +V +AL+    KC  
Sbjct: 295 MQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKE 354

Query: 401 ISEARTLFDKM-SERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLT 458
           I +A +LF  M   ++ V+W +MI G   +G  D+A+ LF+ M  E  K +H +++ +LT
Sbjct: 355 IDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT 414

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
               V + E+   +     EK   +        ++D   + G +++A ++ + + T+ D+
Sbjct: 415 VQHAVFISEIHAEVIKTNYEKSSSVG-----TALLDAFVKIGNISDAVKVFELIETK-DV 468

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
             W A+L      G     E AAK   +L  E    N
Sbjct: 469 IAWSAMLAGYAQAGE---TEEAAKIFHQLTREGIKPN 502


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 237/449 (52%), Gaps = 42/449 (9%)

Query: 120 ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG--LKQ 177
           + F++   ++  AR LFDE P  ++  W  L G Y R G  +EA+ +F  +   G  ++ 
Sbjct: 163 VHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRP 222

Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
           +   +   +  C  + D+  G+++H  V          ++++++DMY KCGS+E AK VF
Sbjct: 223 DEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVF 282

Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
           + +  K                                    VV+W T+I G ++ G   
Sbjct: 283 ERIDNK-----------------------------------TVVSWTTMIVGHARLGMME 307

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
               LF  M     E DV  W ++++G V N    EA   F EM      P   T+ ++L
Sbjct: 308 DARMLFDEMP----ERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLL 363

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            AC+    +  G  +H       +   + + ++LVDMYAKCG I +A  +F ++ ++N +
Sbjct: 364 SACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNAL 423

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TW +MI G ANHG+ DEAIE F +M +   + D ++F  VL+ACCH GLV+ G++ F++M
Sbjct: 424 TWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLM 483

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            EKY +  + +HY+CM+DLLGRAG L EA +++ TM  +PD  VWGAL  AC+ HGNI L
Sbjct: 484 HEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITL 543

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANA 565
            E AA  L EL+P  +   +LL ++YA A
Sbjct: 544 GEKAAMKLVELDPSDSGIYVLLANMYAEA 572



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 128/315 (40%), Gaps = 70/315 (22%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T +I  +     +  ARMLFDE+P+ ++  W AL   Y +    +EA+ +FHEM    + 
Sbjct: 294 TTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVD 353

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            N   + ++L AC  L  +  G  +H  + +H       + +SL+DMY+KCG+++KA  +
Sbjct: 354 PNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICI 413

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F E+ +K+ +   AM+ G    G A EA+                               
Sbjct: 414 FKEIPDKNALTWTAMICGLANHGHADEAI------------------------------- 442

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               + FQ M   G++PD +++  V+S   H     E    F  M  +            
Sbjct: 443 ----EYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEK------------ 486

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERN 415
                   ++ R  + + C I               D+  + G + EA  L + M  + +
Sbjct: 487 -------YHLERKMKHYSCMI---------------DLLGRAGHLDEAEQLVNTMPMDPD 524

Query: 416 TVTWNSMIFGCANHG 430
            V W ++ F C  HG
Sbjct: 525 AVVWGALFFACRMHG 539



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 142/314 (45%), Gaps = 43/314 (13%)

Query: 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317
           R      L  V+++G      +V   N  +  +S SG  V+  +LF    A+    DVVS
Sbjct: 137 RPYGAAVLGHVQKLG---FSADVFVVNAGVHFWSVSGSMVLARRLFDESPAR----DVVS 189

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFC--PTSATISSILPACASAANMRRGKEIHGC 375
           W ++I G V +    EA + F  ++  G    P   T+   +  CA   ++  GK +H  
Sbjct: 190 WNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEF 249

Query: 376 AIVMGVEGDLHVRSALVDMYAKC-------------------------------GFISEA 404
               GV   + + +A++DMY KC                               G + +A
Sbjct: 250 VDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDA 309

Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHV 463
           R LFD+M ER+   WN+++ G   +    EAI LF++M+E K   + ++   +L+AC  +
Sbjct: 310 RMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQL 369

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
           G +E+G  + + + +++++         +VD+  + G + +A  + K +  + +   W A
Sbjct: 370 GALEMGMWVHHYI-DRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDK-NALTWTA 427

Query: 524 LLGACKNHGNIELA 537
           ++    NHG+ + A
Sbjct: 428 MICGLANHGHADEA 441



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P   T   +L ACA       G  + G    +G   D+ V +A V  ++  G +  AR L
Sbjct: 119 PDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRL 178

Query: 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVG 464
           FD+   R+ V+WN++I G    G   EA+ELF ++ E  K    D ++    ++ C  +G
Sbjct: 179 FDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMG 238

Query: 465 LVELGQRLFNMMQEK 479
            +ELG+RL   +  K
Sbjct: 239 DLELGKRLHEFVDSK 253


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 164/509 (32%), Positives = 258/509 (50%), Gaps = 46/509 (9%)

Query: 98  KILHAQLIVSGL--ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K +H  ++ S +   R     ++L+   T      +AR L  +I   +I  W +L G ++
Sbjct: 19  KQIHCLVLTSPIFYTRRDLFLSRLLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFS 78

Query: 156 RRGYHQEAVTV--FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            R      ++   + +M   G+  +    P +LKA   L D    +  H+ +LK  F +D
Sbjct: 79  GRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDANPFQ-FHAHILKFGFDSD 137

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV +SLI  YS CG  E   +VFD   +KD+V+  AM+ G+V+   + EA+    E+  
Sbjct: 138 LFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKR 197

Query: 274 P------------------------------------RVKPNVVTWNTLISGFSKSGDQV 297
                                                RV+ +V   ++L+  + K G   
Sbjct: 198 SGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYD 257

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
              K+F  M ++    +VV+WT++I+G V   C ++    F+EML     P   T+SS+L
Sbjct: 258 DAQKVFDEMPSR----NVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVL 313

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACA    + RG+ +H   I   +E +  V + L+D YAKCG + EA  +F+++ E+N  
Sbjct: 314 SACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVY 373

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
           TW +MI G A HGY   A++LF+ M       + ++F  VL+AC H GLVE G+RLF  M
Sbjct: 374 TWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSM 433

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
           +E++ + P+ +HYACMVDL GR G L EA  +I+ M  EP   VWGAL G+C  H + EL
Sbjct: 434 KERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYEL 493

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANA 565
            + AA  + +L+P  +    LL +LY+ +
Sbjct: 494 GKYAASRVIKLQPSHSGRYTLLANLYSES 522



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 135/276 (48%), Gaps = 5/276 (1%)

Query: 97  GKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G+ +H   + +G  R    I + L+  Y +C     A+ +FDE+P  N+  W AL   Y 
Sbjct: 223 GRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYV 282

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +    ++ + VF EM    +  N   + SVL AC H+  +  G ++H  V+K+S   +  
Sbjct: 283 QGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTT 342

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V ++LID Y+KCG +E+A  VF+ + EK++    AM++G+   G A  A++L   + +  
Sbjct: 343 VGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSH 402

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEA 334
           V PN VT+  ++S  +  G      +LF  M+ +  +EP    +  ++         +EA
Sbjct: 403 VSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEA 462

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
               + M  +   PT+A   ++  +C    +   GK
Sbjct: 463 KALIERMPME---PTNAVWGALFGSCLIHKDYELGK 495



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  G+ +H  +I + +   T + T LI FY +C  +  A ++F+ + + N++ W A+  
Sbjct: 321 ALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMIN 380

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +A  GY   AV +FH M    +  N      VL AC H   +  G ++  L +K  F  
Sbjct: 381 GFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLF-LSMKERFNL 439

Query: 213 D--AFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           +  A   + ++D++ + G +E+AK + + M
Sbjct: 440 EPKADHYACMVDLFGRKGLLEEAKALIERM 469


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 174/515 (33%), Positives = 267/515 (51%), Gaps = 47/515 (9%)

Query: 93  ALQSGKILH------AQLIVSGLARLTQIATKLIT-FYTECQNIHHARMLFDEIPKTNIH 145
           AL+S K LH      +QLIVSGL++    AT  I    +       A  LFD +   +  
Sbjct: 13  ALESWKNLHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVTFPRATFLFDHLHHPDAF 72

Query: 146 RWIALTGAYARRGYHQEAVTVFH-EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
               +  AYAR+     A+  ++ +M  + +  N +  P ++K C  +     G K H+ 
Sbjct: 73  HCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHAR 132

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           ++K  FG+D F  +SLI MYS  G +  A+ VFDE    D+V+ N+M+ GYV+ G    A
Sbjct: 133 IVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAA 192

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM------------------ 306
             +  E+       +V++WN LI+G+   GD    ++LF+ +                  
Sbjct: 193 RKVFNEMP----DRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARV 248

Query: 307 -----------RAKGVEPDVVSWTSVIS--GLVHNFCNDEAFDTFKEML-SQGFCPTSAT 352
                      R      +VVSW SV++    V N+   E    F +M+  +   P  AT
Sbjct: 249 GNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNY--GECLMLFGKMVEGREAVPNEAT 306

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           + S+L ACA+   +  G  +H       ++ D+ + + L+ MYAKCG +  A+ +FD+M 
Sbjct: 307 LVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMP 366

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQR 471
            R+ V+WNSMI G   HG  D+A+ELF +ME+  ++ +  +F +VL+AC H G+V  G  
Sbjct: 367 VRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWW 426

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
            F++MQ  YKI P+ EHY CMVDLL RAG +  + E+I+ +  +    +WGALL  C NH
Sbjct: 427 YFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNH 486

Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            + EL EI AK   ELEP+     +LL+++YA  G
Sbjct: 487 LDSELGEIVAKRFIELEPQDIGPYILLSNMYAAKG 521


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 256/453 (56%), Gaps = 20/453 (4%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T +++ Y   + I  A  LF+ +P  N+  W  +   Y +     +A+ VF  MH + + 
Sbjct: 42  TAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMV 101

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
               VI ++++ CG + +     +   +  +     D    ++++   ++ G V++A+KV
Sbjct: 102 SWNAVIAALVQ-CGRVEE--ARRRFDEMPKR-----DVISWTTMVMGLARSGRVDEARKV 153

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           FD M E+++V+ NAMV+GY +     EA +L E +  P  + N+ +WNT+I+GF ++G+ 
Sbjct: 154 FDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERM--P--ERNLSSWNTMITGFIQNGEL 209

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC-PTSATISS 355
               K+F  M     E +VVSWT++I+G V    ++ A   F EM+  G   P   T  +
Sbjct: 210 AWARKVFNEM----PEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVN 265

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK--MSE 413
           +L AC+  A +  G+++H        +    V SAL++MY+KCG +S AR +FD   +S+
Sbjct: 266 VLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQ 325

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRL 472
           R+ V WN MI   A+HG   EAIELF  M+    K + +S+  +L+AC H GLV+ G   
Sbjct: 326 RDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNY 385

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ +     I  R +H+AC+VDL GRAGRL EAY+ IK + T+    +WG LL  C  HG
Sbjct: 386 FDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHG 445

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           ++E+ ++AAK L + +PE+A   +LL+++YA+ 
Sbjct: 446 DLEIGQLAAKELEKEDPENAGTYLLLSNIYASG 478



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 149/321 (46%), Gaps = 56/321 (17%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           D    +++I  Y KCG +  A+++FD +   KD+V   AM+SGYV+     EA  L E  
Sbjct: 5   DVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFE-- 62

Query: 272 GTPRVKP--NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
               V P  NVV+WNT+I G+ K+ +     ++F+ M     E ++VSW +VI+ LV   
Sbjct: 63  ----VMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMH----ERNMVSWNAVIAALVQCG 114

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
             +EA   F EM      P    IS                      +VMG+        
Sbjct: 115 RVEEARRRFDEM------PKRDVIS-------------------WTTMVMGL-------- 141

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449
                 A+ G + EAR +FD+M ERN V+WN+M+ G A +   DEA +LF +M ER   +
Sbjct: 142 ------ARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPER---N 192

Query: 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
             S+  ++T     G +   +++FN M EK  ++  T      V        L    EMI
Sbjct: 193 LSSWNTMITGFIQNGELAWARKVFNEMPEK-NVVSWTTMITGYVQEGESESALKVFVEMI 251

Query: 510 KTMSTEPDLFVWGALLGACKN 530
           K     P+   +  +LGAC +
Sbjct: 252 KDGGARPNEGTFVNVLGACSD 272


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 175/528 (33%), Positives = 263/528 (49%), Gaps = 42/528 (7%)

Query: 78  PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ-IATKLITFYTECQNIHHARMLF 136
           P      +E  +  R+   G+ +HA ++ +    L   +   L+  Y++    + A+++ 
Sbjct: 7   PNLLGSFLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVL 66

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
                  +  W +L            A+  F  M  + +  N F  P V KA   L    
Sbjct: 67  SLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPV 126

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV 256
           TG+++H+L LK     D FV  S  DMYSK G   +A+ +FDEM  +++   NA +S  V
Sbjct: 127 TGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAV 186

Query: 257 QRGLATEALNLVEEI----GTP-------------------------------RVKPNVV 281
           Q G   +A+   ++     G P                               R + +V 
Sbjct: 187 QDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVS 246

Query: 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
            +N LI  + K GD  +VS      R      +VVSW S+++ LV N   + A   F + 
Sbjct: 247 VFNGLIDFYGKCGD--IVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQA 304

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
             +   PT   ISS+L ACA    +  G+ +H  A+   VE ++ V SALVD+Y KCG I
Sbjct: 305 RKE-VEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSI 363

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK---KLDHLSFTAVLT 458
             A  +F +M ERN VTWN+MI G A+ G  D A+ LF +M        L +++  +VL+
Sbjct: 364 EYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLS 423

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDL 518
           AC   G VE G ++F  M+ +Y I P  EHYAC+VDLLGR+G +  AYE IK M   P +
Sbjct: 424 ACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTI 483

Query: 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            VWGALLGACK HG  +L +IAA+ L EL+P+ + N+++ +++ A+AG
Sbjct: 484 SVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAG 531


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 250/439 (56%), Gaps = 17/439 (3%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I  AR LFD +P  N+  W A+  AY +     EAV +F E   +       +I   ++ 
Sbjct: 251 IVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRV 310

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
            G L +     ++++ +          ++S LI    + G +++A +VF ++ ++D +  
Sbjct: 311 -GKLDE---AREVYNQMPYKDVAAKTALMSGLI----QNGRIDEASQVFSQLNKRDAICW 362

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308
           N+M++GY Q G  +EALNL  ++       N V+WNT+ISG++++G+    +++F+ M  
Sbjct: 363 NSMIAGYCQSGRMSEALNLFRQMPVK----NAVSWNTMISGYAQAGEMDRATEIFEAMGV 418

Query: 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368
           +    +V+SW S+I+G + N    +A  +   M  +G  P  +T +  L +CA+ A ++ 
Sbjct: 419 R----NVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQV 474

Query: 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCAN 428
           GK++H   +  G   DL V +AL+ MYAKCG +  A  +F  +   + ++WNS+I G A 
Sbjct: 475 GKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYAL 534

Query: 429 HGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
           +GY +EA   F QM     + D ++F  +L+AC H GL   G  LF  M E + I P  E
Sbjct: 535 NGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAE 594

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
           HY+C+VDLLGR GRL EA+ +++ M  + +  +WG+LL AC+ H N+EL +IAA  L EL
Sbjct: 595 HYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLEL 654

Query: 548 EPESAANNMLLTDLYANAG 566
           EP +A+N + L++++A AG
Sbjct: 655 EPHNASNYITLSNMHAEAG 673



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 128/509 (25%), Positives = 208/509 (40%), Gaps = 71/509 (13%)

Query: 95  QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           + GKI  A+ + S +          ++T + +   +  AR LFD++ + N+  W  +   
Sbjct: 29  KQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAG 88

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           Y      +EA  +F  M  +       +I    +        G  EK   L        D
Sbjct: 89  YLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRK-------GMLEKARELFELVPDKLD 141

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
               +++I  Y+K G  + A+KVF++M  KD+V+ N+M++GY Q G    A+   E +  
Sbjct: 142 TACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAE 201

Query: 274 PRV---------------------------KPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
             V                            PN V+W T++ GF++ G  V   KLF  M
Sbjct: 202 RNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRM 261

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI-----LPACA 361
             K    +VVSW ++I+  V +   DEA   FKE   +     +  I+       L    
Sbjct: 262 PCK----NVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAR 317

Query: 362 SAANMRRGKEIHGCAIVMG-------------VEGDLHVRSA-----LVDMYAKCGFISE 403
              N    K++     +M              V   L+ R A     ++  Y + G +SE
Sbjct: 318 EVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSE 377

Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463
           A  LF +M  +N V+WN+MI G A  G  D A E+F  M  R   + +S+ +++T     
Sbjct: 378 ALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVR---NVISWNSLITGFLQN 434

Query: 464 GL-VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL---AEAYEMIKTMSTEPDLF 519
           GL ++  + L  M QE  K  P    +AC +        L    + +E+I       DLF
Sbjct: 435 GLYLDALKSLVLMGQEGKK--PDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLF 492

Query: 520 VWGALLGACKNHGNIELAEIAAKHLSELE 548
           V  AL+      G ++ AE   K +  ++
Sbjct: 493 VSNALIAMYAKCGGVQSAEKVFKDIEGVD 521



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 160/357 (44%), Gaps = 43/357 (12%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +Q+G+I  A  + S L +   I    +I  Y +   +  A  LF ++P  N   W  +  
Sbjct: 339 IQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMIS 398

Query: 153 AYARRGYHQEAVTVFHEMHIQ----------GLKQNIFVIPSV----------------- 185
            YA+ G    A  +F  M ++          G  QN   + ++                 
Sbjct: 399 GYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQST 458

Query: 186 ----LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
               L +C +L+ +  G+++H L+LK  +  D FV ++LI MY+KCG V+ A+KVF ++ 
Sbjct: 459 FACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIE 518

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
             D+++ N+++SGY   G A EA    E++ +    P+ VT+  ++S  S +G       
Sbjct: 519 GVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVD 578

Query: 302 LFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           LF+ M     +EP    ++ ++  L      +EAF+  + M  +     +    S+L AC
Sbjct: 579 LFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKA---NAGLWGSLLAAC 635

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRS---ALVDMYAKCGFISEARTLFDKMSER 414
               NM  GK     A +  +E + H  S    L +M+A+ G   +   L   M ER
Sbjct: 636 RVHKNMELGK----IAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRER 688



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 175/384 (45%), Gaps = 56/384 (14%)

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
           +N+F     +   G    I   +++ S V+  +  T     +S++ +++K G V  A+++
Sbjct: 15  KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHAT----YNSMVTVFAKNGRVSDARQL 70

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG------------------------ 272
           FD+M ++++V+ N M++GY+   +  EA  L + +                         
Sbjct: 71  FDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKAR 130

Query: 273 -----TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
                 P  K +   WN +I+G++K G      K+F+ M  K    D+VS+ S+++G   
Sbjct: 131 ELFELVPD-KLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVK----DLVSYNSMLAGYTQ 185

Query: 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387
           N     A   F+ M  +     +  ++  +  C   +     ++I     V  V      
Sbjct: 186 NGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWV------ 239

Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK 447
              ++  +A+ G I EAR LFD+M  +N V+WN+MI         DEA++LF +   +  
Sbjct: 240 --TMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYK-- 295

Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
            D +S+T ++     VG ++  + ++N M  K  +  +T   A M  L+ + GR+ EA +
Sbjct: 296 -DCVSWTTMINGYVRVGKLDEAREVYNQMPYK-DVAAKT---ALMSGLI-QNGRIDEASQ 349

Query: 508 MIKTMSTEPDLFVWGALL-GACKN 530
           +   ++ + D   W +++ G C++
Sbjct: 350 VFSQLN-KRDAICWNSMIAGYCQS 372



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 109/251 (43%), Gaps = 19/251 (7%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ GK LH  ++ SG      ++  LI  Y +C  +  A  +F +I   ++  W +L  
Sbjct: 471 ALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLIS 530

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA  GY  EA   F +M  +G   +      +L AC H      G  +   +++  F  
Sbjct: 531 GYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIE-GFAI 589

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM--NAMVSGYVQRGL---ATEAL 265
           +      S L+D+  + G +E+A  +   M  K    +  + + +  V + +      AL
Sbjct: 590 EPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAAL 649

Query: 266 NLVEEIGTPRVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAK--GVEPDVVSWTSVI 322
            L+E      ++P N   + TL +  +++G    V +L  LMR +  G  P   SW  V 
Sbjct: 650 RLLE------LEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPG-CSWIEV- 701

Query: 323 SGLVHNFCNDE 333
              + NF +D+
Sbjct: 702 QNQIQNFVSDD 712


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/473 (34%), Positives = 254/473 (53%), Gaps = 33/473 (6%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L++ Y +   I  AR +FD +P+ N+  W AL   Y   G    A ++F +M  +     
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSW 144

Query: 179 IFVIPSVLK------ACGHLSDIGTGEKIHSLVLKHSFGTDAFV---------------- 216
             ++   L+      AC     I   + I    + H    +  V                
Sbjct: 145 TVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVI 204

Query: 217 -VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
             ++++  Y +   V+ A+K+FD M EK  V+  +M+ GYVQ G   +A  L E +    
Sbjct: 205 TWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMP--- 261

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
           VKP V+  N +ISG  + G+     ++F  M+    E +  SW +VI     N    EA 
Sbjct: 262 VKP-VIACNAMISGLGQKGEIAKARRVFDSMK----ERNDASWQTVIKIHERNGFELEAL 316

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
           D F  M  QG  PT  T+ SIL  CAS A++  GK++H   +    + D++V S L+ MY
Sbjct: 317 DLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMY 376

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSF 453
            KCG + +++ +FD+   ++ + WNS+I G A+HG  +EA+++F +M      K + ++F
Sbjct: 377 IKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTF 436

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
            A L+AC + G+VE G +++  M+  + + P T HYACMVD+LGRAGR  EA EMI +M+
Sbjct: 437 VATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT 496

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            EPD  VWG+LLGAC+ H  +++AE  AK L E+EPE++   +LL+++YA+ G
Sbjct: 497 VEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQG 549



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 152/332 (45%), Gaps = 66/332 (19%)

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM---YSKCGSVEKAKKVFDEMVEKDIVA 247
           HLS IG   KIH    K     D+  +SS   M   Y        A+K+FDEM +++I++
Sbjct: 26  HLSRIG---KIHE-ARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIIS 81

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
            N +VSGY++ G   EA  + + +     + NVV+W  L+ G+  +G   +   LF  M 
Sbjct: 82  WNGLVSGYMKNGEIDEARKVFDLMP----ERNVVSWTALVKGYVHNGKVDVAESLFWKM- 136

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMR 367
               E + VSWT ++ G + +   D+A   ++                ++P      N+ 
Sbjct: 137 ---PEKNKVSWTVMLIGFLQDGRIDDACKLYE----------------MIP---DKDNIA 174

Query: 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427
           R   IHG                      K G + EAR +FD+MSER+ +TW +M+ G  
Sbjct: 175 RTSMIHG--------------------LCKEGRVDEAREIFDEMSERSVITWTTMVTGYG 214

Query: 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
            +   D+A ++F+ M E+ +   +S+T++L      G +E  + LF       ++MP   
Sbjct: 215 QNNRVDDARKIFDVMPEKTE---VSWTSMLMGYVQNGRIEDAEELF-------EVMPVKP 264

Query: 488 HYAC--MVDLLGRAGRLAEAYEMIKTMSTEPD 517
             AC  M+  LG+ G +A+A  +  +M    D
Sbjct: 265 VIACNAMISGLGQKGEIAKARRVFDSMKERND 296



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 112/269 (41%), Gaps = 56/269 (20%)

Query: 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
           T N  I+  S+ G      KLF    +K +     SW S+++G   N    +A   F EM
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSIS----SWNSMVAGYFANLMPRDARKLFDEM 74

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
                 P    IS                                  + LV  Y K G I
Sbjct: 75  ------PDRNIISW---------------------------------NGLVSGYMKNGEI 95

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461
            EAR +FD M ERN V+W +++ G  ++G  D A  LF +M E+ K   +S+T +L    
Sbjct: 96  DEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNK---VSWTVMLIGFL 152

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
             G ++   +L+ M+ +K  I  RT     M+  L + GR+ EA E+   MS E  +  W
Sbjct: 153 QDGRIDDACKLYEMIPDKDNI-ARTS----MIHGLCKEGRVDEAREIFDEMS-ERSVITW 206

Query: 522 GALLGACKNHGNIELAEIAAKHLSELEPE 550
             ++     +  ++     A+ + ++ PE
Sbjct: 207 TTMVTGYGQNNRVD----DARKIFDVMPE 231


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/522 (32%), Positives = 278/522 (53%), Gaps = 43/522 (8%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KT 142
           + I  + + L   + +HA++I+ G      + + L   Y +   +  A   F+ IP  K 
Sbjct: 11  LTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKR 70

Query: 143 NIHRWIALTGAYARRGY--HQEAVTVFHEM--HIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           N H W  +   Y++     + + + +++ M  H  G+    F +   +KAC  L  +  G
Sbjct: 71  NRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDS--FNLVFAIKACVGLGLLENG 128

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ- 257
             IH L +K+    D +V  SL++MY++ G++E A+KVFDE+  ++ V    ++ GY++ 
Sbjct: 129 ILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKY 188

Query: 258 ---------------RGLATEALNL---VEEIGTPRVKP--NVVTWNTLISGFSKSGDQV 297
                           GLA +AL L   V+  G          V   ++   F    D +
Sbjct: 189 SKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYL 248

Query: 298 MVSKLFQLMRAK-----------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
             S +   ++ +            V+ +VV WT++ISG        EAFD F++ML +  
Sbjct: 249 QASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESI 308

Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
            P   T+++IL +C+S  ++R GK +HG  I  G+E D    ++ +DMYA+CG I  ART
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMART 368

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGL 465
           +FD M ERN ++W+SMI     +G  +EA++ F++M+ +  + + ++F ++L+AC H G 
Sbjct: 369 VFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGN 428

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           V+ G + F  M   Y ++P  EHYACMVDLLGRAG + EA   I  M  +P    WGALL
Sbjct: 429 VKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALL 488

Query: 526 GACKNHGNIELA-EIAAKHLSELEPESAANNMLLTDLYANAG 566
            AC+ H  ++LA EIA K LS +EPE ++  +LL+++YA+AG
Sbjct: 489 SACRIHKEVDLAGEIAEKLLS-MEPEKSSVYVLLSNIYADAG 529


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/516 (30%), Positives = 270/516 (52%), Gaps = 47/516 (9%)

Query: 92  RALQSGKILHAQLIVSGLARLTQ-------IATKLITFYTECQNIHHARMLFDEIPKTNI 144
           R L+ GK++H      G A+          + + L+  Y++C  +  A  +F+E  + + 
Sbjct: 117 RMLELGKVIH------GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDT 170

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203
             W ++   Y +    +EA+ +F +M  +  +  +   + SV+ AC  L ++  G  +H 
Sbjct: 171 VLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHG 230

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
           LV++  F  D  +V+SL+++Y+K G  + A  +F +M EKD+++ + M++ Y     A E
Sbjct: 231 LVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANE 290

Query: 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE----------- 312
           ALNL  E+   R +PN VT  + +   + S +     K+ ++   KG E           
Sbjct: 291 ALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALID 350

Query: 313 --------------------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
                                DVVSW +++SG   N    ++   F+ MLS G  P +  
Sbjct: 351 MYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVA 410

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
           +  IL A +     ++   +HG  +  G   ++ V ++L+++Y+KCG + +A  LF  M 
Sbjct: 411 VVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI 470

Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQ 470
            R+ V W+SMI     HG   EA+E+F+QM +   +  ++++F ++L+AC H GLVE G 
Sbjct: 471 VRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGL 530

Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
           ++F+ M   Y++ P +EH+  MVDLLGR G+L +A ++I  M       VWGALLGAC+ 
Sbjct: 531 KIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRI 590

Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           H NIE+ E AAK+L  L+P  A   +LL+++YA  G
Sbjct: 591 HHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDG 626



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 213/401 (53%), Gaps = 40/401 (9%)

Query: 199  EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
            +K H+ +  +    D+ +++    MY     ++ A  VF+++        N M+ G+   
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 259  GLATEALNLVEEIGTPRVKPNVVTWN---------------------------------- 284
            G    +L L  ++    +KP+   +                                   
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 285  -TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
              L+  ++K GD      +F  M  +    D+VSWTS+ISG  HN  N E    F  M S
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVR----DLVSWTSMISGYAHNGYNSETLGFFDLMRS 912

Query: 344  QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
             G  P   +I S+L AC +   +R+G+  H   I  G E D+ V +A++DMY+KCG +  
Sbjct: 913  SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDL 972

Query: 404  ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCH 462
            AR LFD+ + ++ V W++MI     HG+  +AI+LF+QM +   +  H++FT VL+AC H
Sbjct: 973  ARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH 1032

Query: 463  VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
             GL+E G+  F +M E++ I  +  +YACMVDLLGRAG+L+EA ++I+ M  EPD  +WG
Sbjct: 1033 SGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWG 1092

Query: 523  ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
            +LLGAC+ H N++LAE  A HL  L+P  A  ++LL+++YA
Sbjct: 1093 SLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYA 1133



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 238/472 (50%), Gaps = 45/472 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LH+Q+  +G+   T  ATKL + Y +C ++  AR +FDE P  N+H W +   +Y R   
Sbjct: 23  LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ 82

Query: 160 HQEAVTVFHEM-HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-FGTDAFVV 217
            +E + +FH M    G   + F IP  LKAC  L  +  G+ IH    K+   G+D FV 
Sbjct: 83  WEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVG 142

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE------- 270
           S+L+++YSKCG + +A KVF+E    D V   +MV+GY Q     EAL L  +       
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCV 202

Query: 271 IGTPRVKPNVVTW-----------------------------NTLISGFSKSGDQVMVSK 301
           +  P    +VV+                              N+L++ ++K+G + + + 
Sbjct: 203 VLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAAN 262

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           LF  M     E DV+SW+++I+   +N   +EA + F EM+ + F P S T+ S L ACA
Sbjct: 263 LFSKMP----EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA 318

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
            + N+  GK+IH  A+  G E D  V +AL+DMY KC    EA  LF ++ +++ V+W +
Sbjct: 319 VSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVA 378

Query: 422 MIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           ++ G A +G   +++ +F N + +  + D ++   +L A   +G+ +    L   +  + 
Sbjct: 379 LLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVV-RS 437

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                    A +++L  + G L +A ++ K M    D+ +W +++ A   HG
Sbjct: 438 GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHG 488



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 192/429 (44%), Gaps = 56/429 (13%)

Query: 98   KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
            K  HA++   GL   ++I TK    Y     I  A ++F++IP      W  +   +A  
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 158  GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
            G    ++ ++ +M  +GLK + F  P  LK+C  LSD+  G+ IH  ++      D FV 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 218  SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
            ++L+DMY+KCG +E A+ VFD+M  +D+V+  +M+SGY   G  +E L   + + +  V 
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 278  PNVVT------------------W-----------------NTLISGFSKSGDQVMVSKL 302
            PN V+                  W                   ++  +SK G   +   L
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCL 976

Query: 303  FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
            F     K    D+V W+++I+    +    +A D F +M+  G  P+  T + +L AC+ 
Sbjct: 977  FDETAGK----DLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH 1032

Query: 363  AANMRRGK---EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
            +  +  GK   ++     V+  +  L   + +VD+  + G +SEA  L + M  E +   
Sbjct: 1033 SGLLEEGKMYFQLMTEEFVIARK--LSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASI 1090

Query: 419  WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVEL--GQRLFNMM 476
            W S++  C  H   D A          K  DHL     + A  HV L  +   +  +N +
Sbjct: 1091 WGSLLGACRIHNNLDLA---------EKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEV 1141

Query: 477  QEKYKIMPR 485
            ++  K+M R
Sbjct: 1142 EKVRKMMAR 1150



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 147/280 (52%), Gaps = 4/280 (1%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            LQ GK++H  L+  G +    +   L+  Y +C +I  AR++FD++   ++  W ++   
Sbjct: 834  LQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISG 893

Query: 154  YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            YA  GY+ E +  F  M   G+  N   I SVL ACG+L  +  GE  HS V++  F  D
Sbjct: 894  YAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFD 953

Query: 214  AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
              V ++++DMYSKCGS++ A+ +FDE   KD+V  +AM++ Y   G   +A++L +++  
Sbjct: 954  ILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK 1013

Query: 274  PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN-D 332
              V+P+ VT+  ++S  S SG        FQLM  + V    +S  + +  L+       
Sbjct: 1014 AGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLS 1073

Query: 333  EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            EA D  + M  +   P ++   S+L AC    N+   ++I
Sbjct: 1074 EAVDLIENMPVE---PDASIWGSLLGACRIHNNLDLAEKI 1110



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 182/387 (47%), Gaps = 40/387 (10%)

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
           V+  + +AC +   +    ++HS V K     D F  + L  +Y+KC S++ A+KVFDE 
Sbjct: 6   VLVDLFQACNNGRSV---SQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVE-EIGTPRVKPNVVT---------------WN 284
              ++   N+ +  Y +     E L L    I T    P+  T                 
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 285 TLISGFSKSGDQV------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVH 327
            +I GF+K  D++            + SK  Q+  A  V      PD V WTS+++G   
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 328 NFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
           N   +EA   F +M +         T+ S++ ACA   N++ G  +HG  I    +GDL 
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EER 445
           + ++L+++YAK G    A  LF KM E++ ++W++MI   AN+   +EA+ LF++M E+R
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + + ++  + L AC     +E G+++  +   K   +  +   A ++D+  +     EA
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTA-LIDMYMKCSCPDEA 361

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHG 532
            ++ + +  + D+  W ALL     +G
Sbjct: 362 VDLFQRLPKK-DVVSWVALLSGYAQNG 387



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 14/160 (8%)

Query: 93   ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            AL+ G+  H+ +I +G      +AT ++  Y++C ++  AR LFDE    ++  W A+  
Sbjct: 934  ALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIA 993

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            +Y   G+ ++A+ +F +M   G++ +      VL AC H   +  G+    L+      T
Sbjct: 994  SYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLM------T 1047

Query: 213  DAFVVSS-------LIDMYSKCGSVEKAKKVFDEM-VEKD 244
            + FV++        ++D+  + G + +A  + + M VE D
Sbjct: 1048 EEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPD 1087


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/521 (30%), Positives = 256/521 (49%), Gaps = 51/521 (9%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R+    +I+H  ++ +G      + + L+  Y +C N+  AR +FD + + N+  W  L 
Sbjct: 81  RSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLM 140

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             + +    + A+ VF EM   G   +++ + +VL AC  L  +  G++ H+ ++K+   
Sbjct: 141 VGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVD 200

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            DA V S+L  +YSKCG +E A K F  + EK++++  + VS     G   + L L  E+
Sbjct: 201 FDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEM 260

Query: 272 GTPRVKPNVVTW-----------------------------------NTLISGFSKSGDQ 296
               +KPN  T                                    N+L+  + KSG  
Sbjct: 261 IAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCI 320

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVH---------NFCN--DEAFDTFKEMLSQG 345
           V   +LF  M     +  +V+W ++I+G            + C+   EA   F ++   G
Sbjct: 321 VEAHRLFNRMD----DASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSG 376

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
             P   T+SS+L  C+    + +G++IH   I  G   D+ V ++L+ MY+KCG I  A 
Sbjct: 377 MKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERAS 436

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVG 464
             F +MS R  + W SMI G + HG   +A+ +F  M     + + ++F  VL+AC H G
Sbjct: 437 KAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAG 496

Query: 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524
           +V      F +MQ+KYKI P  +HY CMVD+  R GRL +A   IK M+ EP  F+W   
Sbjct: 497 MVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNF 556

Query: 525 LGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           +  CK+HGN+EL   AA+ L  L+P+     +LL ++Y +A
Sbjct: 557 IAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSA 597



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 187/396 (47%), Gaps = 46/396 (11%)

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F +P +L+ C         + +H  V+K     + FV+S L+++Y+KCG++E A++VFD 
Sbjct: 69  FYVP-LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDN 127

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-----KSG 294
           M+ +++VA   ++ G+VQ      A+++ +E+      P+V T + ++   S     K G
Sbjct: 128 MLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLG 187

Query: 295 DQV---------------------MVSKLFQLMRA-----KGVEPDVVSWTSVISGLVHN 328
           DQ                      + SK  +L  A     +  E +V+SWTS +S    N
Sbjct: 188 DQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADN 247

Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
               +    F EM++    P   T++S L  C    ++  G +++   I  G E +L VR
Sbjct: 248 GAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVR 307

Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA--------NHGYC---DEAIE 437
           ++L+ +Y K G I EA  LF++M + + VTWN+MI G A        N   C    EA++
Sbjct: 308 NSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALK 367

Query: 438 LFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
           LF+++     K D  + ++VL+ C  +  +E G+++ +    K   +        ++ + 
Sbjct: 368 LFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQI-HAQTIKTGFLSDVIVSTSLISMY 426

Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
            + G +  A +    MST   +  W +++     HG
Sbjct: 427 SKCGSIERASKAFLEMSTRT-MIAWTSMITGFSQHG 461



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 179/352 (50%), Gaps = 32/352 (9%)

Query: 34  LLSGTQLVLSCSKSASDAGKPLINGI--FIEAHYKMPIISRSFHLSPAAYSERIEIYIRD 91
           ++S T  V +C+    D G P + G+  F+E    + I    F L+ +A S+  EI    
Sbjct: 234 VISWTSAVSACA----DNGAP-VKGLRLFVEM-IAVDIKPNEFTLT-SALSQCCEIL--- 283

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
            +L+ G  +++  I  G     ++   L+  Y +   I  A  LF+ +   ++  W A+ 
Sbjct: 284 -SLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMI 342

Query: 152 GAYAR-------------RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
             +A+             RG   EA+ +F ++++ G+K ++F + SVL  C  +  I  G
Sbjct: 343 AGHAQMMELTKDNLSACHRG--SEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQG 400

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           E+IH+  +K  F +D  V +SLI MYSKCGS+E+A K F EM  + ++A  +M++G+ Q 
Sbjct: 401 EQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQH 460

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVS 317
           G++ +AL++ E++    V+PN VT+  ++S  S +G        F++M+ K  ++P +  
Sbjct: 461 GMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDH 520

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
           +  ++   V     ++A +  K+M    + P+    S+ +  C S  N+  G
Sbjct: 521 YECMVDMFVRLGRLEQALNFIKKM---NYEPSEFIWSNFIAGCKSHGNLELG 569



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 192/440 (43%), Gaps = 60/440 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++L+ G   HA +I   +     + + L + Y++C  +  A   F  I + N+  W +  
Sbjct: 182 QSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAV 241

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            A A  G   + + +F EM    +K N F + S L  C  +  +  G +++SL +K  + 
Sbjct: 242 SACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYE 301

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ-------------R 258
           ++  V +SL+ +Y K G + +A ++F+ M +  +V  NAM++G+ Q             R
Sbjct: 302 SNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHR 361

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNT--------------------------------- 285
           G  +EAL L  ++    +KP++ T ++                                 
Sbjct: 362 G--SEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVS 419

Query: 286 --LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
             LIS +SK G     SK F  M  +     +++WTS+I+G   +  + +A   F++M  
Sbjct: 420 TSLISMYSKCGSIERASKAFLEMSTR----TMIAWTSMITGFSQHGMSQQALHIFEDMSL 475

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG---VEGDLHVRSALVDMYAKCGF 400
            G  P + T   +L AC+ A  + +   ++   I+     ++  +     +VDM+ + G 
Sbjct: 476 AGVRPNAVTFVGVLSACSHAGMVSQA--LNYFEIMQKKYKIKPAMDHYECMVDMFVRLGR 533

Query: 401 ISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459
           + +A     KM+ E +   W++ I GC +HG  +       Q+   K  D  ++  +L  
Sbjct: 534 LEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNM 593

Query: 460 CCHVGLVELGQRLFNMMQEK 479
                  E   R+  MM+E+
Sbjct: 594 YLSAERFEDVSRVRKMMEEE 613


>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/477 (35%), Positives = 263/477 (55%), Gaps = 26/477 (5%)

Query: 107 SGLARLTQIATKLITFYT--ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAV 164
           SGL     + +K+I+F +     ++ +A+ +F++    N      +  AYA+  +  +A+
Sbjct: 138 SGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAMDNPFVCNTMIRAYAKSVFPIKAI 197

Query: 165 TVFHEMHIQGLKQNIFVIPSVLKACGHL-----SDIG--------TGEKIHSLVLKHSFG 211
            +++ MH + +K + F  P  LKAC  +      DI          G +IH  + +    
Sbjct: 198 YLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLD 257

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D F+ +SL+ +YS+CG ++ A+ VFDEM EK I + N M+S Y Q      A +L   I
Sbjct: 258 QDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSL---I 314

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
           G+   K NVV+WN LI+ + + G       +FQ M     E D VSW S+I+G V     
Sbjct: 315 GSMPGK-NVVSWNMLIARYIRLGKIEDAKVVFQEMP----ERDAVSWNSMIAGYVQIKDY 369

Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
             A   F+EM       T  T+ S+L ACA    +  G++IH        + + ++ +AL
Sbjct: 370 ARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNAL 429

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME---ERKKL 448
           VDMYAKCG ++ A  +F ++  ++   WN+MI   A HGYC+EA+ LF+ ME   +  + 
Sbjct: 430 VDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARP 489

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           + ++F  VL AC H GLV+ G+  FN M  +YKIMP  +HY CMVDLL R G L EA+ M
Sbjct: 490 NRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHM 549

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           IKTM  E +  +W  LLGAC+ H +++LAE + + L ++EP    + +LL+++YA A
Sbjct: 550 IKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEA 606



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 143/415 (34%), Gaps = 130/415 (31%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE------------------ 138
           G  +H +L   GL +   I   L+  Y++C  +  AR +FDE                  
Sbjct: 244 GAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQ 303

Query: 139 -------------IPKTNIHRWIALTGAYARRGYHQEAVTVFH----------------- 168
                        +P  N+  W  L   Y R G  ++A  VF                  
Sbjct: 304 INDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGY 363

Query: 169 --------------EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
                         EM I  ++     + SVL AC     +  G KIH  + +  +  + 
Sbjct: 364 VQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEG 423

Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           ++ ++L+DMY+KCG +  A +VF E+  K I   NAM+      G   EAL L   +   
Sbjct: 424 YLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTME-- 481

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
                                          M   G  P+ V++  V+    H    DE 
Sbjct: 482 -------------------------------MSVDGARPNRVTFIGVLIACSHKGLVDEG 510

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
              F  M+++           I+P                         D+     +VD+
Sbjct: 511 RTFFNRMVNE---------YKIMP-------------------------DIKHYGCMVDL 536

Query: 395 YAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448
            ++CG + EA  +   M  E N+V W +++  C  H + D A E F Q+ + + L
Sbjct: 537 LSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPL 591


>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
          Length = 677

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 172/541 (31%), Positives = 279/541 (51%), Gaps = 75/541 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ILH QLI +G       AT L   Y +   + +A  +F+E+P  N+         ++R
Sbjct: 112 GQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSR 171

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            GY +EA+  F ++ +   + N   I SVL AC  +   G   ++H L +K    +D +V
Sbjct: 172 NGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDG---QVHCLAIKLGVESDIYV 228

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++++ MYS CG +  AKKVFD++++K++V+ NA +SG +Q G      ++ +++     
Sbjct: 229 ATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSG 288

Query: 277 K-PNVVTWNTLISGFSK-----SGDQV---------------------MVSKLFQLMRAK 309
           + PN VT  +++S  SK      G Q+                     M SK      A 
Sbjct: 289 EVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAY 348

Query: 310 GV------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT----------- 352
           G+        ++V+W S+I+G++ N  +D A + F+++  +G  P SAT           
Sbjct: 349 GIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQ 408

Query: 353 ------------------------ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                                   I+S+L AC++ + ++ GKEIHG  I   ++ D  + 
Sbjct: 409 GQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFIS 468

Query: 389 SALVDMYAKCGFISEARTLF--DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           +AL+DMY KCG    AR +F   ++   +   WN+MI G   +G    A E+FNQM+E K
Sbjct: 469 TALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEK 528

Query: 447 -KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + +  +  ++L+ C H G ++ G +LF MM   Y + P +EH+ CMVDLLGR+GRL EA
Sbjct: 529 VQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEA 588

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            E+I  M  E  + V+ +LLGAC++H +  L E  AK LSELEP+     ++L+++YA  
Sbjct: 589 QELIHEM-PEASVSVFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQ 647

Query: 566 G 566
           G
Sbjct: 648 G 648



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 186/355 (52%), Gaps = 39/355 (10%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+++EA++++ ++H   + ++ F  P +LKA   L+    G+ +H+ ++K  F  D +  
Sbjct: 72  GFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAA 131

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L DMY K   +  A KVF+EM  +++ ++N  +SG+ + G   EAL   +++G    +
Sbjct: 132 TALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFR 191

Query: 278 PNVVTWNTLISG--------------------------------FSKSGDQVMVSKLFQL 305
           PN VT  +++                                  +S  G+ V+  K+F  
Sbjct: 192 PNSVTIASVLPACASVELDGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQ 251

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAA 364
           +    ++ +VVS+ + ISGL+ N      FD FK++L S G  P S T+ SIL AC+   
Sbjct: 252 I----LDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLL 307

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMI 423
            +R G++IHG  + + +  D  V +ALVDMY+KCG    A  +F ++S  RN VTWNSMI
Sbjct: 308 YIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMI 367

Query: 424 FGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
            G   +G  D A+ELF Q+E E  + D  ++  +++     G V    + F+ MQ
Sbjct: 368 AGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQ 422



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 12/227 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF--DEIPKTNIHRWIAL 150
           ALQSGK +H   I + +     I+T LI  Y +C + + AR +F   +I   +   W A+
Sbjct: 445 ALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAM 504

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              Y R G +Q A  +F++M  + ++ N   + S+L  C H  +I  G ++  + +   +
Sbjct: 505 ISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKM-MNRDY 563

Query: 211 GTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG---YVQRGLATEAL 265
           G +        ++D+  + G +++A+++  EM E  +    +++     +    L  E  
Sbjct: 564 GLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEEMA 623

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
             + E+      P V+  N     ++  G    V ++ ++M  +G++
Sbjct: 624 KKLSELEPQDPTPFVILSNI----YAVQGRWGDVERVREMMNDRGLK 666



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+ LV N    EA   + ++ S        T   +L A A   +  +G+ +H   I  G 
Sbjct: 65  IAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGF 124

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             D++  +AL DMY K   +S A  +F++M  RN  + N  I G + +GY  EA+  F Q
Sbjct: 125 HLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQ 184

Query: 442 MEERK-KLDHLSFTAVLTACCHVGL 465
           +     + + ++  +VL AC  V L
Sbjct: 185 VGLGNFRPNSVTIASVLPACASVEL 209


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 177/564 (31%), Positives = 273/564 (48%), Gaps = 92/564 (16%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH---RWIALT 151
           + G   H  +  +G      I   L+  Y+ C ++  A M+FDEI +  I     W ++ 
Sbjct: 172 RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIV 231

Query: 152 GAYARRGYHQEAVTVFHEMHI------QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            A+ +      A+ +F +M +         + +I  I ++L ACG L  +   +++H   
Sbjct: 232 SAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 291

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ-------- 257
           +++    D FV ++LID Y+KCG +E A KVF+ M  KD+V+ NAMV+GY Q        
Sbjct: 292 IRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAF 351

Query: 258 ---------------------------RGLATEALNLVEEIGTPRVKPNVVTWNTLISG- 289
                                      RG + EALNL  ++      PN VT  +++S  
Sbjct: 352 ELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSAC 411

Query: 290 ---------------------------FSKSGDQVMV--------SKLFQLMRAKGV--- 311
                                      F    + +MV        SK      A+ +   
Sbjct: 412 ASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 471

Query: 312 ----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ--GFCPTSATISSILPACASAAN 365
               E +VV+WT +I G      +++A   F EM+S+  G  P + TIS IL ACA  A 
Sbjct: 472 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAA 531

Query: 366 MRRGKEIHGCAIVMGV--EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           +R GK+IH   +           V + L+DMY+KCG +  AR +FD MS+++ ++W SM+
Sbjct: 532 IRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMM 591

Query: 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G   HG   EA+++F++M +   + D ++F  VL AC H G+V+ G   F+ M   Y +
Sbjct: 592 TGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGL 651

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            PR EHYAC +DLL R+GRL +A+  +K M  EP   VW ALL AC+ H N+ELAE A  
Sbjct: 652 TPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALN 711

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L E+  E+  +  L++++YA AG
Sbjct: 712 KLVEMNAENDGSYTLISNIYATAG 735



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 235/510 (46%), Gaps = 92/510 (18%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            + T ++  Y  C    +A ++ + +  +    W  L   + ++G    A+ V   M   
Sbjct: 90  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 149

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G + + F +P VLKACG L     G   H L+  + F ++ F+ ++L+ MYS+CGS+E+A
Sbjct: 150 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 234 KKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNLVEEI------------------- 271
             +FDE+ ++   D+++ N++VS +V+   A  AL+L  ++                   
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 272 ----------GTPRVK------------PNVVTWNTLISGFSKSG--------------- 294
                       P+ K            P+V   N LI  ++K G               
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 295 DQV----MVS------------KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           D V    MV+            +LF+ MR + +  DVV+WT+VI+G     C+ EA + F
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHG-----CAIVM-----GVEGDLHVR 388
           ++M+  G  P   TI S+L ACAS     +G EIH      C + +     G + DL V 
Sbjct: 390 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449

Query: 389 SALVDMYAKCGFISEARTLFDK--MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           +AL+DMY+KC     AR++FD   + ERN VTW  MI G A +G  ++A++LF +M    
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 447 ---KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAGRL 502
                +  + + +L AC H+  + +G+++   +   ++        A C++D+  + G +
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 569

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             A  +  +MS +     W +++     HG
Sbjct: 570 DTARHVFDSMS-QKSAISWTSMMTGYGMHG 598



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 177/417 (42%), Gaps = 61/417 (14%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIH----RWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           ++  Y++  N   A  LF  + K NI      W A+   Y++RG   EA+ +F +M   G
Sbjct: 337 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 396

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHS-------LVLKHSFG---TDAFVVSSLIDMY 224
              N   I SVL AC  L     G +IH+       L L + FG    D  V ++LIDMY
Sbjct: 397 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 456

Query: 225 SKCGSVEKAKKVFDE--MVEKDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPR-VKPNV 280
           SKC S + A+ +FD+  + E+++V    M+ G+ Q G + +AL L VE I  P  V PN 
Sbjct: 457 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 516

Query: 281 VT-------------------------------------WNTLISGFSKSGDQVMVSKLF 303
            T                                      N LI  +SK GD      +F
Sbjct: 517 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF 576

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             M  K      +SWTS+++G   +    EA D F +M   GF P   T   +L AC+  
Sbjct: 577 DSMSQKSA----ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 632

Query: 364 ANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA-RTLFDKMSERNTVTWNS 421
             + +G       +   G+       +  +D+ A+ G + +A RT+ D   E   V W +
Sbjct: 633 GMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVA 692

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           ++  C  H   + A    N++ E    +  S+T +       G  +   R+ ++M++
Sbjct: 693 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 749



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 14/276 (5%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDR--ALQSGKILHAQLIVSGLARLTQ--IATKLITFYT 124
           +IS  + ++P AY+    +       A++ GK +HA ++       +   +A  LI  Y+
Sbjct: 505 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYS 564

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
           +C ++  AR +FD + + +   W ++   Y   G   EA+ +F +M   G   +      
Sbjct: 565 KCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLV 624

Query: 185 VLKACGHLSDIGTG-EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VE 242
           VL AC H   +  G     S+   +     A   +  ID+ ++ G ++KA +   +M +E
Sbjct: 625 VLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPME 684

Query: 243 KDIVAMNAMVSG---YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
              V   A++S    +    LA  ALN + E+       N  ++  + + ++ +G    V
Sbjct: 685 PTAVVWVALLSACRVHSNVELAEHALNKLVEMNA----ENDGSYTLISNIYATAGRWKDV 740

Query: 300 SKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCNDEA 334
           +++  LM+  G++     SW     G    F  D +
Sbjct: 741 ARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRS 776


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 168/509 (33%), Positives = 266/509 (52%), Gaps = 71/509 (13%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD-------------- 137
           R +++GK +H+ ++  GL     ++  L+  Y +C +   A+ +FD              
Sbjct: 160 RCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219

Query: 138 -----------------EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL-KQNI 179
                            ++ + +I  W ++   + +RGY   A+ +F +M    L   + 
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDR 279

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           F + SVL AC +L  +  G++IHS ++   F     V+++LI MYS+CG           
Sbjct: 280 FTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG----------- 328

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
                              G+ T A  L+E+ GT  +K  +  +  L+ G+ K GD    
Sbjct: 329 -------------------GVET-ARRLIEQRGTKDLK--IEGFTALLDGYIKLGDMNQA 366

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
             +F  ++ +    DVV+WT++I G   +    EA + F+ M+  G  P S T++++L  
Sbjct: 367 KNIFVSLKDR----DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSV 422

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVT 418
            +S A++  GK+IHG A+  G    + V +AL+ MYAK G I+ A   FD +  ER+TV+
Sbjct: 423 ASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS 482

Query: 419 WNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           W SMI   A HG+ +EA+ELF  M  E  + DH+++  V +AC H GLV  G++ F+MM+
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +  KI+P   HYACMVDL GRAG L EA E I+ M  EPD+  WG+LL AC+ H NI+L 
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG 602

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           ++AA+ L  LEPE++     L +LY+  G
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACG 631



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 229/481 (47%), Gaps = 52/481 (10%)

Query: 96  SGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           + +++H ++I SGL     +   L+  Y++     HAR LFDE+P      W  +  AY+
Sbjct: 32  TAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYS 91

Query: 156 RRG--------------------------------YHQEAVTVFHEMHIQGLKQNIFVIP 183
           +RG                                YH+ A+ V  +M  +G++   F + 
Sbjct: 92  KRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHK-AIRVMGDMVKEGIEPTQFTLT 150

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           +VL +      + TG+K+HS ++K     +  V +SL++MY+KCG    AK VFD MV +
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR 210

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           DI + NAM++ ++Q G    A+   E++     + ++VTWN++ISGF++ G  +    +F
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMA----ERDIVTWNSMISGFNQRGYDLRALDIF 266

Query: 304 -QLMRAKGVEPDVVSWTSVISGL--VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA- 359
            +++R   + PD  +  SV+S    +   C  +   +   +++ GF  +   +++++   
Sbjct: 267 SKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS--HIVTTGFDISGIVLNALISMY 324

Query: 360 --CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             C      RR  E  G    + +EG     +AL+D Y K G +++A+ +F  + +R+ V
Sbjct: 325 SRCGGVETARRLIEQRGTKD-LKIEG----FTALLDGYIKLGDMNQAKNIFVSLKDRDVV 379

Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            W +MI G   HG   EAI LF  M    ++ +  +  A+L+    +  +  G+++    
Sbjct: 380 AWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSA 439

Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
            +  +I   +   A ++ +  +AG +  A      +  E D   W +++ A   HG+ E 
Sbjct: 440 VKSGEIYSVSVSNA-LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEE 498

Query: 537 A 537
           A
Sbjct: 499 A 499



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 173/383 (45%), Gaps = 12/383 (3%)

Query: 33  ALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDR 92
           +LLS  +  L+   SA    + L  G  I +H    I++  F +S    +  I +Y R  
Sbjct: 273 SLLSPDRFTLASVLSACANLEKLCIGKQIHSH----IVTTGFDISGIVLNALISMYSRCG 328

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            +++ + L  Q     L    +  T L+  Y +  +++ A+ +F  +   ++  W A+  
Sbjct: 329 GVETARRLIEQRGTKDLK--IEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIV 386

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G + EA+ +F  M   G + N + + ++L     L+ +  G++IH   +K     
Sbjct: 387 GYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIY 446

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
              V ++LI MY+K G++  A + FD +  E+D V+  +M+    Q G A EAL L E +
Sbjct: 447 SVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR-AKGVEPDVVSWTSVISGLVHNFC 330
               ++P+ +T+  + S  + +G      + F +M+    + P +  +  ++        
Sbjct: 507 LMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGL 566

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
             EA +  ++M  +   P   T  S+L AC    N+  GK      +++  E      SA
Sbjct: 567 LQEAQEFIEKMPIE---PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENS-GAYSA 622

Query: 391 LVDMYAKCGFISEARTLFDKMSE 413
           L ++Y+ CG   EA  +   M +
Sbjct: 623 LANLYSACGKWEEAAKIRKSMKD 645



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 11/125 (8%)

Query: 348 PTSATISSILPACAS----AANMRRGK----EIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
           P   ++S++L  C +    + N   G+     +H   I  G+   +++ + L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459
           +   AR LFD+M  R   +WN+++   +  G  D   E F+Q+ +R   D +S+T ++  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQR---DSVSWTTMIVG 120

Query: 460 CCHVG 464
             ++G
Sbjct: 121 YKNIG 125


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/487 (33%), Positives = 260/487 (53%), Gaps = 18/487 (3%)

Query: 94  LQSGKILHAQLIV---SGLARLTQIATKLITFYTECQNIHHARMLF-----DEIPKTNIH 145
           L S +  HA+L+V              KLI  Y  C  +  A  +      D   +T   
Sbjct: 28  LPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSALPLAHTVLESSSPDGRSRTTTV 87

Query: 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLK--QNIFVIPSVLKACGHLSDIGTGEKIHS 203
            +  L  A      H++A+ +F  M  +G     + +  P  LK+C    D+  G +IHS
Sbjct: 88  CFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHS 147

Query: 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE 263
            V K     + +V  S I MYS+CG  E A +VFD M  +D+V+ NAM++G+ + GL   
Sbjct: 148 AVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDR 207

Query: 264 ALNLVEE-IGTPRVKPNVVTWNTLIS--GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS 320
           A+ + ++ +      P+  T   ++   G +K  D   V ++F  M+ K    +++SW +
Sbjct: 208 AIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFK----ELISWNA 263

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380
           +++   +N  + +A + F  M      P S T++++LP C   +    GK IH       
Sbjct: 264 MLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKN 323

Query: 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440
           +  +L + +AL+DMYA CG + +AR +FD MS R+ ++W S+I     HG+  EA++LF 
Sbjct: 324 MCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFE 383

Query: 441 QM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +M  +  + D ++F AVL AC H GL+  G+  F+ M  +Y I+P+ EHY CMVDLLGRA
Sbjct: 384 KMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRA 443

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G + EAY+ I TM  EP+  VWGALL AC+ H N+++  +AA +L  L PE     +LL+
Sbjct: 444 GCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLS 503

Query: 560 DLYANAG 566
           ++YA AG
Sbjct: 504 NMYARAG 510



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A   GK +H  +    +     +   L+  Y  C  +  AR +FD +   ++  W ++  
Sbjct: 308 AFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIIS 367

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
           AY + G+ +EAV +F +M  QGL+ +     +VL AC H   +  G+    S+  ++   
Sbjct: 368 AYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHII 427

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA---LNLV 268
             A   + ++D+  + G + +A      M    ++  N  V G + +     +   + LV
Sbjct: 428 PKAEHYTCMVDLLGRAGCINEAYDFITTM----LIEPNERVWGALLQACRIHSNMDIGLV 483

Query: 269 EEIGTPRVKPNVVTWNTLISG-FSKSGDQVMVSKLFQLMRAKGVE 312
                  + P    +  L+S  ++++G    V+ +  +M  KG++
Sbjct: 484 AADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIK 528


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 250/472 (52%), Gaps = 42/472 (8%)

Query: 98  KILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           K  H+Q+I  GL+       ++I F   ++  ++++A  +FD+IP  + + +  +   Y 
Sbjct: 37  KQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYL 96

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           R    +  + ++  M  + +  N F  P +++AC     I  G++IH+ VLK  FG D F
Sbjct: 97  RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 156

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
            +++LI MY    S+E+A++VFD M ++D                               
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNMPQRD------------------------------- 185

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
               VV+W +LI+G+S+ G      ++F+LM     E + VSW ++I+  V +    EAF
Sbjct: 186 ----VVSWTSLITGYSQWGFVDKAREVFELM----PERNSVSWNAMIAAYVQSNRLHEAF 237

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
             F  M  +         +S+L AC     + +GK IHG     G+E D  + + ++DMY
Sbjct: 238 ALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMY 297

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFT 454
            KCG + +A  +F+++ ++   +WN MI G A HG  + AIELF +ME E    D ++F 
Sbjct: 298 CKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFV 357

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
            VL+AC H GLVE G+  F  M E   + P  EH+ CMVDLLGRAG L EA ++I  M  
Sbjct: 358 NVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPV 417

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            PD  V GAL+GAC+ HGN EL E   K + ELEP ++   +LL +LYA+AG
Sbjct: 418 NPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAG 469



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 35/314 (11%)

Query: 91  DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           D A++ GK +HA ++  G          LI  Y   Q++  AR +FD +P+ ++  W +L
Sbjct: 133 DYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSL 192

Query: 151 TGAYARRGY-------------------------------HQEAVTVFHEMHIQGLKQNI 179
              Y++ G+                                 EA  +F  M ++ +  + 
Sbjct: 193 ITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDK 252

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           FV  S+L AC  L  +  G+ IH  + K     D+ + +++IDMY KCG +EKA +VF+E
Sbjct: 253 FVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNE 312

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           + +K I + N M+ G    G    A+ L +E+    V P+ +T+  ++S  + SG     
Sbjct: 313 LPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEG 372

Query: 300 SKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
              FQ M    G++P +  +  ++  L      +EA     EM      P +  + +++ 
Sbjct: 373 KHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVN---PDAGVLGALVG 429

Query: 359 ACASAANMRRGKEI 372
           AC    N   G++I
Sbjct: 430 ACRIHGNTELGEQI 443



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H  +  SG+   +++AT +I  Y +C  +  A  +F+E+P+  I  W  + G
Sbjct: 267 ALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIG 326

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE---KIHSLVLKHS 209
             A  G  + A+ +F EM  + +  +     +VL AC H   +  G+   +  + VL   
Sbjct: 327 GLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLK 386

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLV 268
            G + F    ++D+  + G +E+A+K+ +EM V  D   + A+V      G  TE   L 
Sbjct: 387 PGMEHF--GCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHG-NTE---LG 440

Query: 269 EEIGTP--RVKP-NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
           E+IG     ++P N   +  L + ++ +G    V+K+ +LM  +GV+
Sbjct: 441 EQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVK 487


>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
           [Vitis vinifera]
 gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
          Length = 617

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 172/541 (31%), Positives = 279/541 (51%), Gaps = 75/541 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ILH QLI +G       AT L   Y +   + +A  +F+E+P  N+         ++R
Sbjct: 52  GQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSR 111

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            GY +EA+  F ++ +   + N   I SVL AC  +   G   ++H L +K    +D +V
Sbjct: 112 NGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDG---QVHCLAIKLGVESDIYV 168

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++++ MYS CG +  AKKVFD++++K++V+ NA +SG +Q G      ++ +++     
Sbjct: 169 ATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSG 228

Query: 277 K-PNVVTWNTLISGFSK-----SGDQV---------------------MVSKLFQLMRAK 309
           + PN VT  +++S  SK      G Q+                     M SK      A 
Sbjct: 229 EVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAY 288

Query: 310 GV------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT----------- 352
           G+        ++V+W S+I+G++ N  +D A + F+++  +G  P SAT           
Sbjct: 289 GIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQ 348

Query: 353 ------------------------ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
                                   I+S+L AC++ + ++ GKEIHG  I   ++ D  + 
Sbjct: 349 GQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFIS 408

Query: 389 SALVDMYAKCGFISEARTLF--DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           +AL+DMY KCG    AR +F   ++   +   WN+MI G   +G    A E+FNQM+E K
Sbjct: 409 TALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEK 468

Query: 447 -KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + +  +  ++L+ C H G ++ G +LF MM   Y + P +EH+ CMVDLLGR+GRL EA
Sbjct: 469 VQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEA 528

Query: 506 YEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
            E+I  M  E  + V+ +LLGAC++H +  L E  AK LSELEP+     ++L+++YA  
Sbjct: 529 QELIHEM-PEASVSVFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQ 587

Query: 566 G 566
           G
Sbjct: 588 G 588



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 186/355 (52%), Gaps = 39/355 (10%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G+++EA++++ ++H   + ++ F  P +LKA   L+    G+ +H+ ++K  F  D +  
Sbjct: 12  GFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAA 71

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK 277
           ++L DMY K   +  A KVF+EM  +++ ++N  +SG+ + G   EAL   +++G    +
Sbjct: 72  TALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFR 131

Query: 278 PNVVTWNTLISG--------------------------------FSKSGDQVMVSKLFQL 305
           PN VT  +++                                  +S  G+ V+  K+F  
Sbjct: 132 PNSVTIASVLPACASVELDGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQ 191

Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML-SQGFCPTSATISSILPACASAA 364
           +    ++ +VVS+ + ISGL+ N      FD FK++L S G  P S T+ SIL AC+   
Sbjct: 192 I----LDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLL 247

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMI 423
            +R G++IHG  + + +  D  V +ALVDMY+KCG    A  +F ++S  RN VTWNSMI
Sbjct: 248 YIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMI 307

Query: 424 FGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
            G   +G  D A+ELF Q+E E  + D  ++  +++     G V    + F+ MQ
Sbjct: 308 AGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQ 362



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 12/227 (5%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF--DEIPKTNIHRWIAL 150
           ALQSGK +H   I + +     I+T LI  Y +C + + AR +F   +I   +   W A+
Sbjct: 385 ALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAM 444

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              Y R G +Q A  +F++M  + ++ N   + S+L  C H  +I  G ++  + +   +
Sbjct: 445 ISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKM-MNRDY 503

Query: 211 GTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG---YVQRGLATEAL 265
           G +        ++D+  + G +++A+++  EM E  +    +++     +    L  E  
Sbjct: 504 GLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEEMA 563

Query: 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
             + E+      P V+  N     ++  G    V ++ ++M  +G++
Sbjct: 564 KKLSELEPQDPTPFVILSNI----YAVQGRWGDVERVREMMNDRGLK 606



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I+ LV N    EA   + ++ S        T   +L A A   +  +G+ +H   I  G 
Sbjct: 5   IAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGF 64

Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
             D++  +AL DMY K   +S A  +F++M  RN  + N  I G + +GY  EA+  F Q
Sbjct: 65  HLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQ 124

Query: 442 MEERK-KLDHLSFTAVLTACCHVGL 465
           +     + + ++  +VL AC  V L
Sbjct: 125 VGLGNFRPNSVTIASVLPACASVEL 149


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 268/536 (50%), Gaps = 64/536 (11%)

Query: 94   LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ-NIHHARMLFDEIPKTNIHRWIALTG 152
            +++ K LHA  IVSGL       +K++  Y   Q ++  A  +FD+I       W  L  
Sbjct: 466  MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 525

Query: 153  AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
              A+     +A+  + +    G+  +    P +LKAC  ++ +  GE++H+ + K    +
Sbjct: 526  GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 585

Query: 213  DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
            D FV +SLI +Y+ CG++  A+ VFDEMV KD+V+ N+++ GY Q     + L L + + 
Sbjct: 586  DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645

Query: 273  TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
               VK + VT                                    NTL+  F + G   
Sbjct: 646  NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705

Query: 298  MVSKLFQLMRAKGV---------------------------EPDVVSWTSVISGLVHNFC 330
               K+F  M+ + +                           + D++SW+S+ISG      
Sbjct: 706  SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765

Query: 331  NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
              +A + F++M      P +  I+S++ +CA    +  GK +H       ++ D  + ++
Sbjct: 766  FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENS 825

Query: 391  LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLD 449
            L+DMY KCG   EA  +F +M E++T++WNS+I G AN+G+  E++ LF  M  E  + +
Sbjct: 826  LIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPN 885

Query: 450  HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509
             ++F  VL AC +  LVE G   F  M+  Y + P+ +HY C+VDLLGRAG+L +A   I
Sbjct: 886  GVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFI 945

Query: 510  KTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
              M  +PD  VW  LLG+C  HG++ +AEI  K L+ELEP ++ N  LL++ YA+A
Sbjct: 946  TEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASA 1001



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 223/453 (49%), Gaps = 57/453 (12%)

Query: 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170
           +L QI ++LI           A  +FD  P      W AL  AY+   + Q+A+ +F   
Sbjct: 37  QLLQIHSQLI-----------AHQVFDRRPTP----WHALLKAYSHGPHPQDALQLFRHA 81

Query: 171 HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230
                  + +     LKAC  L       ++H LV++  F    +V ++L+++Y  CG +
Sbjct: 82  RWHA-ADDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCL 140

Query: 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGF 290
             ++  F+EM  K                                   N V+WN +I+GF
Sbjct: 141 ADSRMAFEEMPVK-----------------------------------NAVSWNVVITGF 165

Query: 291 SKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
           +  G+      LF+ M  +    +VVSW+ +I G        EA   F+ M+++G  P+ 
Sbjct: 166 AGWGEVEYARLLFERMPCR----NVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSE 221

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
            T+ +++PA ++   +  G+ +HG     G+  D+ V ++L+D+YAK G I  +  +FD+
Sbjct: 222 ITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDE 281

Query: 411 M-SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVEL 468
           M   RN V+W S+I G A HG   +A+ELF  M     + + ++F +VL AC H GLVE 
Sbjct: 282 MLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQ 341

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G   F  M  +Y I P  +H+ C++D+LGRAGRL EA ++I+    E +  VW  LLG C
Sbjct: 342 GVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCC 401

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
             +G +E+ E   K +  LE E   + ++L+++
Sbjct: 402 SKYGEVEMGERTMKKILALEREFGGDFVVLSNM 434



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 112/199 (56%), Gaps = 4/199 (2%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           ++ + R   LQS + +   + V  +  +      +I  Y + Q+I  AR +FD+IPK ++
Sbjct: 695 VDYFGRRGQLQSAEKVFFNMKVRNIVTMN----AMIAAYAKGQDIVSARKIFDQIPKKDL 750

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W ++   Y++  +  +A+ +F +M    +K +  VI SV+ +C HL  +  G+ +H  
Sbjct: 751 ISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEY 810

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V +++   D  + +SLIDMY KCGS ++A +VF EM EKD ++ N+++ G    G   E+
Sbjct: 811 VRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKES 870

Query: 265 LNLVEEIGTPRVKPNVVTW 283
           LNL + + T   +PN VT+
Sbjct: 871 LNLFQAMLTEGFRPNGVTF 889



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 164/354 (46%), Gaps = 16/354 (4%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN 128
           ++ + F      ++  + +YI    L   ++   ++ V        +    IT +     
Sbjct: 115 VVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVV----ITGFAGWGE 170

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           + +AR+LF+ +P  N+  W  +   Y R     EAV +F  M  +G+  +   + +V+ A
Sbjct: 171 VEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPA 230

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVA 247
             ++  I  GE +H    K     D  V +SLID+Y+K GS++ + +VFDEM++ +++V+
Sbjct: 231 LSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVS 290

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-LM 306
             +++SG+   GL+ +A+ L  ++    ++PN +T+ +++   S  G        F+ ++
Sbjct: 291 WTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMI 350

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI-SSILPACASAAN 365
               + PDV  +  +I  L       EA    ++   +     +AT+  ++L  C+    
Sbjct: 351 YEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVE----VNATVWRTLLGCCSKYGE 406

Query: 366 MRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
           +  G+      + +  E  GD  V   L +M  +    S+A  +   + +RN+V
Sbjct: 407 VEMGERTMKKILALEREFGGDFVV---LSNMLTELRRFSDAEIVRKLVDQRNSV 457


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 174/528 (32%), Positives = 264/528 (50%), Gaps = 42/528 (7%)

Query: 73  SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
           SF  + AA S       R     + + LH   + +G A  T +A+ L   Y +      A
Sbjct: 109 SFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDA 168

Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGH 191
           R +FD +P  +   W  L           EA+  F  M   G ++ +   + S L+A   
Sbjct: 169 RKVFDTVPSPDTILWNTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAE 224

Query: 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAM 251
            S +  G  +H   +K        VV+ L+ +YSKCG ++ A+ +FD M   D+VA NA+
Sbjct: 225 ASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNAL 284

Query: 252 VSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
           +SGY   G+   ++ L +E+     +PN  T   +I  +S  G +++   L   +    +
Sbjct: 285 ISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARL 344

Query: 312 EPDVV-------------------------------SWTSVISGLVHNFCNDEAFDTFKE 340
           + D +                               SW ++ISG   N   + A   F+ 
Sbjct: 345 DADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQL 404

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M      P   TISS L ACA    +  GK +H       +E +++V +AL+DMYAKCG 
Sbjct: 405 MQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGS 464

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS-FTAVLTA 459
           I+EAR++FD+M  +N V+WN+MI G   HG   EA++L+  M + + L   S F +V+ A
Sbjct: 465 IAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYA 524

Query: 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---P 516
           C H GLV+ GQ++F +M  +Y+I P  EH  CMVDLLGRAG+L EA E+I         P
Sbjct: 525 CSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGP 584

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
              VWGALLGAC  H N +LA++A++ L EL+ E+A   +LL++LY +
Sbjct: 585 G--VWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTS 630


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 228/399 (57%), Gaps = 42/399 (10%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M ++G   N      +  AC     +  G+ IH+  +K  F  D + +++L+DMY+K G 
Sbjct: 1   MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
           +  A++VFDEM  +DI                                    TWN+LI+G
Sbjct: 61  LMLARQVFDEMTVRDIP-----------------------------------TWNSLIAG 85

Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCP 348
           +S+SGD     +LF+LM ++     VVSWT++ISG   N    +A + F +M   +   P
Sbjct: 86  YSRSGDMEGALELFKLMPSR----SVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRP 141

Query: 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
              TI+S+  ACA    +  G+ I   A   G+  +L+V + L++MYA+CG I  AR +F
Sbjct: 142 NEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVF 201

Query: 409 DKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLV 466
           +++ +R N  +WNSM+ G A HG  +EA++L++QM  E  + D ++F  ++ AC H GLV
Sbjct: 202 NEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLV 261

Query: 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLG 526
             G +LF  M+  + I+P+ EHY CMVDLLGRAG L EAY+++K+M  +PD  +WG LLG
Sbjct: 262 AKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLG 321

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           AC  H N+E AEIAA+ L ++EP +  N ++L ++YA+A
Sbjct: 322 ACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASA 360



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 37/309 (11%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L  GK++H   I SG        T L+  Y +   +  AR +FDE+   +I  W +L  
Sbjct: 25  SLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVFDEMTVRDIPTWNSLIA 84

Query: 153 AYARRGYHQEAVTVFHEMH----------IQGLKQN--------IFV------------- 181
            Y+R G  + A+ +F  M           I G  QN        +F+             
Sbjct: 85  GYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEV 144

Query: 182 -IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
            I SV  AC  L  +  GE+I S    +    + +V ++L++MY++CG ++ A+ VF+E+
Sbjct: 145 TIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEI 204

Query: 241 VE-KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
            + +++ + N+M+ G    G + EAL L +++    ++P+ VT+  LI   +  G     
Sbjct: 205 GKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKG 264

Query: 300 SKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            +LFQ M     + P +  +  ++  L       EA+D  K M  +   P S    ++L 
Sbjct: 265 WQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMK---PDSVIWGTLLG 321

Query: 359 ACASAANMR 367
           AC+  +N+ 
Sbjct: 322 ACSFHSNVE 330


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 250/480 (52%), Gaps = 40/480 (8%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           ++  +  + ++ G+ +HA ++ +G A    ++  L+ FY  C  +   R +FDE+ +  +
Sbjct: 98  LKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGL 157

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W  +  AY    + ++A+ +F  M   GL  ++  I +V+ ACG L D+G  + +H  
Sbjct: 158 VLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCF 217

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           + K     DAFV S+LI  Y +CGS++ A + F E   K+IV  N M+   V+       
Sbjct: 218 IEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEH----NN 273

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
           L L +++       +VV+WN++I GF++ G        F  M   GV P+ +        
Sbjct: 274 LELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNAL-------- 325

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
                                      T+ S L ACAS   +  G  IH       +  D
Sbjct: 326 ---------------------------TLLSTLSACASHGALDTGAWIHAYVDKNDMNRD 358

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
             + S+L+DMY+KCG I +A  +F++ + R+  TW S++ G A HG  ++A+  F++M+E
Sbjct: 359 GSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKE 418

Query: 445 RK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
            + + D ++   VL+AC H GL++ G   F  M++ + ++P+ EHY CMVDLLGR G L 
Sbjct: 419 AQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLK 478

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           EAY++I  M  E +  +WGA L AC+ H N+EL E+AA+ L  L+P      ++L+++YA
Sbjct: 479 EAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVMLSNMYA 538



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 132/274 (48%), Gaps = 5/274 (1%)

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
           E  N+   + LF  +P  ++  W ++ G +AR G +QEA+T FHEM   G+  N   + S
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLS 329

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
            L AC     + TG  IH+ V K+    D  + SSLIDMYSKCG ++KA ++F+E   +D
Sbjct: 330 TLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRD 389

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           +    ++V G    G   +AL+   ++   +V+P+ VT   ++S  + +G        FQ
Sbjct: 390 LFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQ 449

Query: 305 LM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
            M +  G+ P V  +  ++  L    C  EA+D    M  +          + L AC   
Sbjct: 450 SMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEA---NEIIWGAFLSACRVH 506

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            N+  G E+    ++     D   R  L +MYA+
Sbjct: 507 NNVELG-EVAARRLLGLDPRDPWARVMLSNMYAE 539



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 156/365 (42%), Gaps = 42/365 (11%)

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           GL+ N      +LKA     ++  GE++H+ V++  F    FV  +L+  Y  CG V K 
Sbjct: 86  GLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKG 145

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293
           ++VFDEM +  +V    ++  YV      +AL L   +    + P++V  +T++S     
Sbjct: 146 RQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLL 205

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           GD  +   +   +   G+E D    +++IS        D A+  F+E   +         
Sbjct: 206 GDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNI----VVW 261

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           ++++       N+  GK+                                   LF  M +
Sbjct: 262 NTMIHQSVEHNNLELGKQ-----------------------------------LFQSMPD 286

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRL 472
           R+ V+WNSMI G A  G   EA+  F++ME      + L+  + L+AC   G ++ G  +
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              + +K  +       + ++D+  + G + +A ++ +  ST  DLF W +++     HG
Sbjct: 347 HAYV-DKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAMHG 404

Query: 533 NIELA 537
             E A
Sbjct: 405 RGEKA 409



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 5/228 (2%)

Query: 314 DVVSWTSVISGLVHN--FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371
           +V  W ++I   V N     D     + + L  G  P   T   +L A  S   ++ G+E
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112

Query: 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           +H   +  G      V  AL+  Y  CG + + R +FD+M +   V W  +I       +
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172

Query: 432 CDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
            ++A+ELF  M E     D ++ + V++AC  +G + + + +   + EK  I       +
Sbjct: 173 PEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFI-EKSGIEVDAFVSS 231

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            ++   G  G L  AY   +    + ++ VW  ++     H N+EL +
Sbjct: 232 TLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGK 278


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 266/501 (53%), Gaps = 41/501 (8%)

Query: 95  QSGKI-LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           Q+GK+ L  Q   S   R       ++  Y +  ++  A  LF++IP  N   W+ +   
Sbjct: 185 QNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCG 244

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
            A+ G   EA  +F  M      +N+    +++    ++ D+   E +   + K     D
Sbjct: 245 LAKYGKMAEARELFDRMP----SKNVVSWNAMIAT--YVQDLQVDEAVK--LFKKMPHKD 296

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
           +   +++I+ Y + G +++A++V+++M  KDI A  A++SG +Q G   EA  +   IG 
Sbjct: 297 SVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGA 356

Query: 274 P-------------------------RVKP--NVVTWNTLISGFSKSGDQVMVSKLFQLM 306
                                     R  P  N V+WNT+ISG++++G     +++FQ M
Sbjct: 357 HDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAM 416

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
           R    E ++VSW S+I+G + N    +A  +   M  +G  P  +T +  L ACA+ A +
Sbjct: 417 R----EKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAAL 472

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           + G ++H   +  G   DL V +AL+ MYAKCG +  A  +F  +   + ++WNS+I G 
Sbjct: 473 QVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGY 532

Query: 427 ANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
           A +GY ++A + F QM  ER   D ++F  +L+AC H GL   G  +F  M E + I P 
Sbjct: 533 ALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPL 592

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
            EHY+C+VDLLGR GRL EA+  ++ M  + +  +WG+LLGAC+ H N+EL   AA+ L 
Sbjct: 593 AEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLF 652

Query: 546 ELEPESAANNMLLTDLYANAG 566
           ELEP +A+N + L++++A AG
Sbjct: 653 ELEPHNASNYITLSNMHAEAG 673



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 186/413 (45%), Gaps = 46/413 (11%)

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM 134
           H +   Y+  I +  ++  ++  + L  Q+ +  L         +I  Y     +  A  
Sbjct: 45  HKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWN----TMIAGYLHNNMVEEASE 100

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK-ACGHLS 193
           LFD +P+ +   W  +   Y R+G  ++A  +              ++P  L  AC +  
Sbjct: 101 LFDVMPERDNFSWALMITCYTRKGKLEKARELLE------------LVPDKLDTACWNAM 148

Query: 194 DIGTGEKIHSLVLKHSF----GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
             G  +K      K  F      D    +S++  Y++ G +  A + F+ M E+++V+ N
Sbjct: 149 IAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWN 208

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
            MV+GYV+ G  + A  L E+I      PN V+W T++ G +K G      +LF  M +K
Sbjct: 209 LMVAGYVKSGDLSSAWQLFEKIPN----PNAVSWVTMLCGLAKYGKMAEARELFDRMPSK 264

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
               +VVSW ++I+  V +   DEA   FK+M  +     S + ++I+        +   
Sbjct: 265 ----NVVSWNAMIATYVQDLQVDEAVKLFKKMPHK----DSVSWTTIINGYIRVGKLDEA 316

Query: 370 KEIHG---CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
           ++++    C        D+  ++AL+    + G I EA  +F ++   + V WNSMI G 
Sbjct: 317 RQVYNQMPCK-------DITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGY 369

Query: 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           +  G  DEA+ LF QM  +   + +S+  +++     G ++    +F  M+EK
Sbjct: 370 SRSGRMDEALNLFRQMPIK---NSVSWNTMISGYAQAGQMDRATEIFQAMREK 419



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 180/420 (42%), Gaps = 96/420 (22%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           +I+   +   I  AR LFD++   N+  W  +   Y      +EA  +F           
Sbjct: 54  MISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFD---------- 103

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             V+P                             D F  + +I  Y++ G +EKA+++ +
Sbjct: 104 --VMPE---------------------------RDNFSWALMITCYTRKGKLEKARELLE 134

Query: 239 EMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
            + +K D    NAM++GY ++G   +A  + E++       ++V++N++++G++++G   
Sbjct: 135 LVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAK----DLVSYNSMLAGYTQNGKMH 190

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
           +  + F+ M     E +VVSW  +++G V +     A+  F+++      P    +S + 
Sbjct: 191 LALQFFESM----TERNVVSWNLMVAGYVKSGDLSSAWQLFEKI------PNPNAVSWVT 240

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
             C                                   AK G ++EAR LFD+M  +N V
Sbjct: 241 MLCG---------------------------------LAKYGKMAEARELFDRMPSKNVV 267

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           +WN+MI         DEA++LF +M  +   D +S+T ++     VG ++  ++++N M 
Sbjct: 268 SWNAMIATYVQDLQVDEAVKLFKKMPHK---DSVSWTTIINGYIRVGKLDEARQVYNQMP 324

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            K      T   A M  L+ + GR+ EA +M   +    D+  W +++      G ++ A
Sbjct: 325 CK----DITAQTALMSGLI-QNGRIDEADQMFSRIGAH-DVVCWNSMIAGYSRSGRMDEA 378



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 8/154 (5%)

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
           +L   ++++ + AK   I +AR LFD+MS RN V+WN+MI G  ++   +EA ELF+ M 
Sbjct: 47  NLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMP 106

Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
           ER   D+ S+  ++T     G +E  + L  ++ +K      T  +  M+    + G+  
Sbjct: 107 ER---DNFSWALMITCYTRKGKLEKARELLELVPDKLD----TACWNAMIAGYAKKGQFN 159

Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
           +A ++ + M  + DL  + ++L     +G + LA
Sbjct: 160 DAKKVFEQMPAK-DLVSYNSMLAGYTQNGKMHLA 192



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455
            K G + EA  +F  M+ +N VT+NSMI   A +    +A +LF+QM  R   + +S+  
Sbjct: 28  GKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLR---NLVSWNT 84

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE 515
           ++    H  +VE    LF++M E+         +A M+    R G+L +A E+++ +  +
Sbjct: 85  MIAGYLHNNMVEEASELFDVMPERDNF-----SWALMITCYTRKGKLEKARELLELVPDK 139

Query: 516 PDLFVWGALLGACKNHGNIELAE 538
            D   W A++      G    A+
Sbjct: 140 LDTACWNAMIAGYAKKGQFNDAK 162



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 98/246 (39%), Gaps = 6/246 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G  LH  ++ SG      +   LI  Y +C  +  A  +F +I   ++  W +L  
Sbjct: 471 ALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLIS 530

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YA  GY  +A   F +M  + +  +      +L AC H      G  I   +++  F  
Sbjct: 531 GYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIE-DFAI 589

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
           +      S L+D+  + G +E+A      M  K    +   + G  +     E      E
Sbjct: 590 EPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAE 649

Query: 271 IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK--GVEPDVVSWTSVISGLVHN 328
                   N   + TL +  +++G    V ++  LMR K  G +P   SW  V + + H 
Sbjct: 650 RLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPG-CSWIEVQNQIQHF 708

Query: 329 FCNDEA 334
             +D A
Sbjct: 709 LSHDPA 714


>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/439 (35%), Positives = 238/439 (54%), Gaps = 42/439 (9%)

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           N+ +AR LFD    +    +  L  AY       E++ +++ +   GL+ +      +  
Sbjct: 24  NLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFA 83

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           A    S       +HS   +  F +D+F  ++LI  Y+K G++  A++VFDEM ++D   
Sbjct: 84  ASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRD--- 140

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
                                           V  WN +I+G+ + GD     +LF  M 
Sbjct: 141 --------------------------------VPVWNAMITGYQRRGDMKAAMELFDSMP 168

Query: 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAANM 366
            K    +V SWT+VISG   N    EA   F  M   +   P   T+ S+LPACA+   +
Sbjct: 169 RK----NVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGEL 224

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-SERNTVTWNSMIFG 425
             G+ + G A   G   +++V +A ++MY+KCG I  A+ LF+++ ++RN  +WNSMI  
Sbjct: 225 EIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGS 284

Query: 426 CANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484
            A HG  DEA+ LF QM  E +K D ++F  +L AC H G+V  GQ LF  M+E +KI P
Sbjct: 285 LATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISP 344

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
           + EHY CM+DLLGR G+L EAY++IKTM  +PD  VWG LLGAC  HGN+E+AEIA++ L
Sbjct: 345 KLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEAL 404

Query: 545 SELEPESAANNMLLTDLYA 563
            +LEP +  N ++++++YA
Sbjct: 405 FKLEPTNPGNCVIMSNIYA 423



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 140/303 (46%), Gaps = 37/303 (12%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           ++LH+Q   SG    +   T LIT Y +   +  AR +FDE+ K ++  W A+   Y RR
Sbjct: 95  RLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRR 154

Query: 158 GYHQEAVTVFHEMH----------IQGLKQN--------IFV--------------IPSV 185
           G  + A+ +F  M           I G  QN        +F+              + SV
Sbjct: 155 GDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSV 214

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKD 244
           L AC +L ++  G ++     ++ F  + +V ++ I+MYSKCG ++ AK++F+E+  +++
Sbjct: 215 LPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRN 274

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
           + + N+M+      G   EAL L  ++     KP+ VT+  L+      G  V   +LF+
Sbjct: 275 LCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFK 334

Query: 305 LM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
            M     + P +  +  +I  L       EA+D  K M  +   P +    ++L AC+  
Sbjct: 335 SMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK---PDAVVWGTLLGACSFH 391

Query: 364 ANM 366
            N+
Sbjct: 392 GNV 394



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 40/218 (18%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTG 152
           L+ G+ L      +G      +    I  Y++C  I  A+ LF+E+  + N+  W ++ G
Sbjct: 224 LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIG 283

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFG 211
           + A  G H EA+T+F +M  +G K +      +L AC H   +  G+++  S+   H   
Sbjct: 284 SLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKIS 343

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
                   +ID+  + G +++A  +                                  I
Sbjct: 344 PKLEHYGCMIDLLGRVGKLQEAYDL----------------------------------I 369

Query: 272 GTPRVKPNVVTWNTLISGFSKSGD----QVMVSKLFQL 305
            T  +KP+ V W TL+   S  G+    ++    LF+L
Sbjct: 370 KTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKL 407


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 266/530 (50%), Gaps = 50/530 (9%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P  ++  +       AL  G+ +HAQ +  G      +   L+  Y +C  +  A+ +F
Sbjct: 200 NPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVF 259

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           + +   ++  W  L           EA+ +FHE      K       +V+K C +L  + 
Sbjct: 260 NWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGY 255
              ++HS VLKH F     V+++L D YSKCG +  A  +F      +++V+  A++SG 
Sbjct: 320 LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNT------------------------------ 285
           +Q G    A+ L   +   RV PN  T++                               
Sbjct: 380 IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGT 439

Query: 286 -LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT------F 338
            L++ +SK G       +F+++  K    DVV+W++++S      C+ +A D       F
Sbjct: 440 ALLASYSKFGSTEDALSIFKMIEQK----DVVAWSAMLS------CHAQAGDCEGATYLF 489

Query: 339 KEMLSQGFCPTSATISSILPACA-SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            +M  QG  P   TISS++ ACA  +A + +G++ H  +I       + V SALV MY++
Sbjct: 490 NKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSR 549

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAV 456
            G I  A+ +F++ ++R+ V+WNSMI G A HGY  +AIE F QME    ++D ++F AV
Sbjct: 550 KGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAV 609

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           +  C H GLV  GQ+ F+ M   +KI P  EHYACMVDL  RAG+L E   +I+ M    
Sbjct: 610 IMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPA 669

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              VW  LLGAC+ H N+EL + +A  L  LEP  ++  +LL+++YA AG
Sbjct: 670 GAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAG 719



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 215/479 (44%), Gaps = 43/479 (8%)

Query: 89  IRDRALQSGKILHAQLIVSGLAR-LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           + DR L  G+ LH   +  G  R      T L+  Y +C ++     +F+ +PK N+  W
Sbjct: 112 VPDRVL--GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            +L    A    H E + +F  M  +G+  N F   SVL A      +  G+++H+  +K
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK 229

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
               +  FV +SL++MY+KCG VE AK VF+ M  +D+V+ N +++G        EAL L
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQL 289

Query: 268 VEEIGTPRVKPNVVTWNTLIS---------------------GFSKSGDQVMV-----SK 301
             E      K    T+ T+I                      GF  +G+ +       SK
Sbjct: 290 FHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSK 349

Query: 302 LFQLMRAKGV------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             +L  A  +        +VVSWT++ISG + N     A   F  M      P   T S+
Sbjct: 350 CGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSA 409

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L A  S        +IH   I    +    V +AL+  Y+K G   +A ++F  + +++
Sbjct: 410 MLKASLSILP----PQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKD 465

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC-CHVGLVELGQRLF 473
            V W++M+   A  G C+ A  LFN+M  +  K +  + ++V+ AC C    V+ G R F
Sbjct: 466 VVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQG-RQF 524

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           + +  KY+        + +V +  R G +  A +++    T+ DL  W +++     HG
Sbjct: 525 HAISIKYRYHDAICVSSALVSMYSRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQHG 582



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 208/447 (46%), Gaps = 53/447 (11%)

Query: 132 ARMLFDEIPKTNIHRWIALTGA------YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           AR   DEIP+ +     A  GA      YARRG   E +  F      G+  +   +  V
Sbjct: 51  ARYPLDEIPRRD-----AAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCV 105

Query: 186 LKACGHLSDIGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           LKAC  + D   GE++H L +K  H  G +    +SL+DMY KCGSV +  +VF+ M +K
Sbjct: 106 LKACRSVPDRVLGEQLHCLCVKCGHDRG-EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKK 164

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------- 294
           ++V   ++++G     + +E + L   +    + PN  T+ +++S  +  G         
Sbjct: 165 NVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVH 224

Query: 295 ---------DQVMVSKLFQLMRAKG--VEP-----------DVVSWTSVISGLVHNFCND 332
                      V V      M AK   VE            D+VSW ++++GL  N C  
Sbjct: 225 AQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECEL 284

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F E  +     T +T ++++  CA+   +   +++H C +  G     +V +AL 
Sbjct: 285 EALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALA 344

Query: 393 DMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           D Y+KCG +++A  +F   +  RN V+W ++I GC  +G    A+ LF++M E+R   + 
Sbjct: 345 DAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNE 404

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +++A+L A   +   ++  ++   ++  Y+ +P       ++    + G   +A  + K
Sbjct: 405 FTYSAMLKASLSILPPQIHAQV---IKTNYQHIPFVG--TALLASYSKFGSTEDALSIFK 459

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELA 537
            M  + D+  W A+L      G+ E A
Sbjct: 460 -MIEQKDVVAWSAMLSCHAQAGDCEGA 485



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 170/389 (43%), Gaps = 39/389 (10%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           ++ + Y+  I++    + L   + LH+ ++  G      + T L   Y++C  +  A  +
Sbjct: 300 MTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNI 359

Query: 136 FDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           F     + N+  W A+     + G    AV +F  M    +  N F   ++LKA   LS 
Sbjct: 360 FSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA--SLSI 417

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +    +IH+ V+K ++    FV ++L+  YSK GS E A  +F  + +KD+VA +AM+S 
Sbjct: 418 L--PPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSC 475

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-------------------KSGD 295
           + Q G    A  L  ++    +KPN  T +++I   +                   +  D
Sbjct: 476 HAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHD 535

Query: 296 QVMVSKLF-------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
            + VS                Q++  +  + D+VSW S+ISG   +  + +A +TF++M 
Sbjct: 536 AICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQME 595

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFI 401
           + G      T  +++  C     +  G++     +    +   +   + +VD+Y++ G +
Sbjct: 596 ASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKL 655

Query: 402 SEARTLFDKMS-ERNTVTWNSMIFGCANH 429
            E  +L   M      + W +++  C  H
Sbjct: 656 DETMSLIRDMPFPAGAMVWRTLLGACRVH 684


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/397 (38%), Positives = 230/397 (57%), Gaps = 28/397 (7%)

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           ++ ++  + +VL AC  +     G+ +H + ++     D FV ++L+DMY+KCG V++A 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           KVFD + EKD+V+ NAMV+GY Q G   +AL L E++    ++ NVV+W+ +I+ F++ G
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSAT 352
                  +F+ M+                   H   ND A + F  M  Q     P   T
Sbjct: 129 LGCETLDVFREMQ-------------------HGEAND-ALELFSWMFKQDGLVKPNCFT 168

Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGD---LHVRSALVDMYAKCGFISEARTLFD 409
           IS  L ACA  A +R G++IH  A ++    D   L+V + L+DMYAK G I  AR +FD
Sbjct: 169 ISCALIACARLAALRLGRQIH--AYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFD 226

Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVEL 468
            + ++N V+W S++ G   HG   EA+E+F++M     + D ++   VL AC H G+++ 
Sbjct: 227 NLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQ 286

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G   FN M +++ ++P  EHYACMVDLLGRAGRL EA E+I+ M  EP   VW ALL  C
Sbjct: 287 GIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGC 346

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           + H N+EL E AAK L EL  E+  +  LL+++YANA
Sbjct: 347 RIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANA 383



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 131/275 (47%), Gaps = 26/275 (9%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIH----RWIALTGAYARRGYHQEAVTVFHEMH--- 171
           ++  Y++      A  LF+++ + NI      W A+  A+A+RG   E + VF EM    
Sbjct: 85  MVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGE 144

Query: 172 -------------IQGL-KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFV 216
                          GL K N F I   L AC  L+ +  G +IH+ +L++ F +   +V
Sbjct: 145 ANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYV 204

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            + LIDMY+K G ++ A+ VFD + +K+ V+  ++++GY   G   EAL + +E+    +
Sbjct: 205 ANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGL 264

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAF 335
           +P+ VT   ++   S SG      + F  M  + GV P    +  ++  L      +EA 
Sbjct: 265 QPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAM 324

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370
           +  + M  +   P+S    ++L  C   AN+  G+
Sbjct: 325 ELIEGMQME---PSSIVWVALLSGCRIHANVELGE 356



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 3/168 (1%)

Query: 90  RDRALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWI 148
           R  AL+ G+ +HA ++ +   +    +A  LI  Y +  +I  AR +FD + + N   W 
Sbjct: 178 RLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWT 237

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG-EKIHSLVLK 207
           +L   Y   G  +EA+ VF EM   GL+ +   +  VL AC H   I  G E  +S+  +
Sbjct: 238 SLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKE 297

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG 254
                     + ++D+  + G + +A ++ + M +E   +   A++SG
Sbjct: 298 FGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSG 345


>gi|356546597|ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial-like [Glycine max]
          Length = 525

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/494 (30%), Positives = 258/494 (52%), Gaps = 45/494 (9%)

Query: 60  FIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKL 119
            I  H   P  +  F     ++S  +++YI       G+ +H+ ++ SG    T I+ KL
Sbjct: 19  LISHHQPFPQ-NHDFIPPSTSFSNALQLYINSETPSHGQKIHSSILKSGFVPNTNISIKL 77

Query: 120 ITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
           +  Y +C  + +AR +FD++    +  +  +   Y ++   +E++ + H + + G K + 
Sbjct: 78  LILYLKCNCLRYARQVFDDLRDRTLSAYNYMISGYLKQDQVEESLGLVHRLLVSGEKPDG 137

Query: 180 FVIPSVLKACGHLSDIGT----GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKK 235
           F    +LKA     ++      G  +H+ +LK     D  + ++LID Y K G V  A+ 
Sbjct: 138 FTFSMILKASTSGCNVALLGDLGRMVHTQILKSDIERDEVLCTALIDSYVKNGRVAYART 197

Query: 236 VFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           VFD M EK++V   +++SGY+ +G   +A    E I    +  +VV +N +I G+SK+ +
Sbjct: 198 VFDVMSEKNVVCSTSLISGYMNQGSIEDA----ECIFLKTMDKDVVAFNAMIEGYSKTSE 253

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             M S                                   + + +M    F P  +T +S
Sbjct: 254 YAMRS----------------------------------LEVYIDMQRLNFRPNVSTFAS 279

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           ++ AC+  A    G+++    +      D+ + SAL+DMYAKCG + +AR +FD M ++N
Sbjct: 280 VIGACSMLAAFEIGQQVQSQLMKTPFYADIKLGSALIDMYAKCGRVVDARRVFDCMLKKN 339

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLF 473
             +W SMI G   +G+ DEA++LF +++    +  ++++F + L+AC H GLV+ G  +F
Sbjct: 340 VFSWTSMIDGYGKNGFPDEALQLFGKIQTEYGIVPNYVTFLSALSACAHAGLVDKGWEIF 399

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
             M+ +Y + P  EHYACMVDLLGRAG L +A+E +  M   P+L VW ALL +C+ HGN
Sbjct: 400 QSMENEYLVKPGMEHYACMVDLLGRAGMLNQAWEFVMRMPERPNLDVWAALLSSCRLHGN 459

Query: 534 IELAEIAAKHLSEL 547
           +E+A++AA  L +L
Sbjct: 460 LEMAKLAANELFKL 473


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 177/564 (31%), Positives = 273/564 (48%), Gaps = 92/564 (16%)

Query: 95  QSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH---RWIALT 151
           + G   H  +  +G      I   L+  Y+ C ++  A M+FDEI +  I     W ++ 
Sbjct: 179 RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIV 238

Query: 152 GAYARRGYHQEAVTVFHEMHI------QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV 205
            A+ +      A+ +F +M +         + +I  I ++L ACG L  +   +++H   
Sbjct: 239 SAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 298

Query: 206 LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ-------- 257
           +++    D FV ++LID Y+KCG +E A KVF+ M  KD+V+ NAMV+GY Q        
Sbjct: 299 IRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAF 358

Query: 258 ---------------------------RGLATEALNLVEEIGTPRVKPNVVTWNTLISG- 289
                                      RG + EALNL  ++      PN VT  +++S  
Sbjct: 359 ELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSAC 418

Query: 290 ---------------------------FSKSGDQVMV--------SKLFQLMRAKGV--- 311
                                      F    + +MV        SK      A+ +   
Sbjct: 419 ASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 478

Query: 312 ----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ--GFCPTSATISSILPACASAAN 365
               E +VV+WT +I G      +++A   F EM+S+  G  P + TIS IL ACA  A 
Sbjct: 479 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAA 538

Query: 366 MRRGKEIHGCAIVMGV--EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           +R GK+IH   +           V + L+DMY+KCG +  AR +FD MS+++ ++W SM+
Sbjct: 539 IRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMM 598

Query: 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G   HG   EA+++F++M +   + D ++F  VL AC H G+V+ G   F+ M   Y +
Sbjct: 599 TGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGL 658

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            PR EHYAC +DLL R+GRL +A+  +K M  EP   VW ALL AC+ H N+ELAE A  
Sbjct: 659 TPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALN 718

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            L E+  E+  +  L++++YA AG
Sbjct: 719 KLVEMNAENDGSYTLISNIYATAG 742



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 235/510 (46%), Gaps = 92/510 (18%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            + T ++  Y  C    +A ++ + +  +    W  L   + ++G    A+ V   M   
Sbjct: 97  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 156

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G + + F +P VLKACG L     G   H L+  + F ++ F+ ++L+ MYS+CGS+E+A
Sbjct: 157 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 234 KKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNLVEEI------------------- 271
             +FDE+ ++   D+++ N++VS +V+   A  AL+L  ++                   
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 272 ----------GTPRVK------------PNVVTWNTLISGFSKSG--------------- 294
                       P+ K            P+V   N LI  ++K G               
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 295 DQV----MVS------------KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
           D V    MV+            +LF+ MR + +  DVV+WT+VI+G     C+ EA + F
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHG-----CAIVM-----GVEGDLHVR 388
           ++M+  G  P   TI S+L ACAS     +G EIH      C + +     G + DL V 
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456

Query: 389 SALVDMYAKCGFISEARTLFDK--MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446
           +AL+DMY+KC     AR++FD   + ERN VTW  MI G A +G  ++A++LF +M    
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 447 ---KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAGRL 502
                +  + + +L AC H+  + +G+++   +   ++        A C++D+  + G +
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 576

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             A  +  +MS +     W +++     HG
Sbjct: 577 DTARHVFDSMS-QKSAISWTSMMTGYGMHG 605



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 177/417 (42%), Gaps = 61/417 (14%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIH----RWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           ++  Y++  N   A  LF  + K NI      W A+   Y++RG   EA+ +F +M   G
Sbjct: 344 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 403

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHS-------LVLKHSFG---TDAFVVSSLIDMY 224
              N   I SVL AC  L     G +IH+       L L + FG    D  V ++LIDMY
Sbjct: 404 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 463

Query: 225 SKCGSVEKAKKVFDE--MVEKDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPR-VKPNV 280
           SKC S + A+ +FD+  + E+++V    M+ G+ Q G + +AL L VE I  P  V PN 
Sbjct: 464 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 523

Query: 281 VTW-------------------------------------NTLISGFSKSGDQVMVSKLF 303
            T                                      N LI  +SK GD      +F
Sbjct: 524 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF 583

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
             M  K      +SWTS+++G   +    EA D F +M   GF P   T   +L AC+  
Sbjct: 584 DSMSQKSA----ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 639

Query: 364 ANMRRG-KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA-RTLFDKMSERNTVTWNS 421
             + +G       +   G+       +  +D+ A+ G + +A RT+ D   E   V W +
Sbjct: 640 GMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVA 699

Query: 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           ++  C  H   + A    N++ E    +  S+T +       G  +   R+ ++M++
Sbjct: 700 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 756



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 14/276 (5%)

Query: 69  IISRSFHLSPAAYSERIEIYIRDR--ALQSGKILHAQLIVSGLARLTQ--IATKLITFYT 124
           +IS  + ++P AY+    +       A++ GK +HA ++       +   +A  LI  Y+
Sbjct: 512 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYS 571

Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
           +C ++  AR +FD + + +   W ++   Y   G   EA+ +F +M   G   +      
Sbjct: 572 KCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLV 631

Query: 185 VLKACGHLSDIGTG-EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VE 242
           VL AC H   +  G     S+   +     A   +  ID+ ++ G ++KA +   +M +E
Sbjct: 632 VLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPME 691

Query: 243 KDIVAMNAMVSG---YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
              V   A++S    +    LA  ALN + E+       N  ++  + + ++ +G    V
Sbjct: 692 PTAVVWVALLSACRVHSNVELAEHALNKLVEMNA----ENDGSYTLISNIYATAGRWKDV 747

Query: 300 SKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCNDEA 334
           +++  LM+  G++     SW     G    F  D +
Sbjct: 748 ARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRS 783


>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
          Length = 594

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 247/453 (54%), Gaps = 40/453 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + T L+  Y  C  +  AR +FD +P  ++  W  +   Y +   ++EA+ +FH M    
Sbjct: 106 VGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSR 165

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +  +  +I +VL  C H  ++  G+ IHS +L      DA V  +L++MY+ C  +E A+
Sbjct: 166 VVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAE 225

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           K+++ + EK+IV             L+T                      T++ G++K+G
Sbjct: 226 KLYNRVSEKEIV-------------LST----------------------TMVYGYAKNG 250

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
              +   +F  M AK    DVVSW+++I+G   +    EA + F +M   G  P   T+ 
Sbjct: 251 KVEIAHSIFNGMPAK----DVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITML 306

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++ ACA+   + + + IH       +   L + +AL+DM++KCG ++ A  +F+ M ++
Sbjct: 307 SVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQK 366

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           N VTW S+I   A HG    A+ LF  M+ E  + + ++F  +L ACCH GLVE G+ LF
Sbjct: 367 NVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLF 426

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
            +M ++Y+I P  EHY CMVDLLGRA  L +A ++I++M   P++ +WG+LL AC+ HG+
Sbjct: 427 KIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGD 486

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +EL   AAK + EL+P      +LL+++YA  G
Sbjct: 487 LELGTFAAKKILELDPNHGGAQVLLSNIYAEYG 519



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 3/131 (2%)

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407
           P    + S+L A A A ++      HG A  +G E D  V +ALV  YA CG + +AR +
Sbjct: 67  PGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRV 126

Query: 408 FDKMSERNTVTWNSMI-FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGL 465
           FD M +R+ V W  M+   C    Y +EA+ LF+ M+  + + D +    VL+ C H   
Sbjct: 127 FDGMPDRDLVAWGVMLDCYCQARNY-EEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRN 185

Query: 466 VELGQRLFNMM 476
           +  G+ + + M
Sbjct: 186 LRFGKAIHSYM 196



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 43/208 (20%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+  + +H+ +    + ++  I   LI  +++C ++  A  +F+ +P+ N+  W ++  
Sbjct: 317 ALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIIT 376

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A A  G  + A+T+F  M  +G++ N      +L AC H                     
Sbjct: 377 ASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCH--------------------- 415

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMN----AMVSGYVQRGLATEALNL 267
                          G VE+ + +F  MV++  I  M+     MV    +  L  +A +L
Sbjct: 416 --------------AGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADL 461

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           ++ +    ++PNVV W +L++     GD
Sbjct: 462 IQSM---HLRPNVVIWGSLLAACRMHGD 486


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 156/459 (33%), Positives = 242/459 (52%), Gaps = 42/459 (9%)

Query: 109 LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFH 168
           +A+   +   L+ FY   +++ HAR LFDE+P  ++  W  L   YARRG   EA  VF 
Sbjct: 172 VAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFC 231

Query: 169 EMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227
            M + G L+ N   + +V+ A G +  +  G  ++  V     G    + ++LIDM+ K 
Sbjct: 232 RMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKF 291

Query: 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
           G    A++VFD M  KD                                   V +W T++
Sbjct: 292 GCAASAREVFDSMAVKD-----------------------------------VYSWTTMV 316

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347
           + ++K GD    ++LF  M  +    + VSW+ +I+        +EA   FK M+ +G  
Sbjct: 317 NAYAKCGDLESAARLFDDMPRR----NAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVE 372

Query: 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEG-DLHVRSALVDMYAKCGFISEART 406
           P +A + S+L ACA    +  G+ I+   ++ G     +++ +A +D+YAKCG    A  
Sbjct: 373 PINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASK 432

Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGL 465
           LF +M+ERN V+WNSMI   A HG  +E + LF Q++    + D ++F  +L+AC H GL
Sbjct: 433 LFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGL 492

Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
           V  G+R F  M+  Y I P++EHYACM+DLLG+ G L EA+E+ K M  E D   WGALL
Sbjct: 493 VSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALL 552

Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
            AC+ +GN+E+ E AA  L +L P  +   +L++ +YA+
Sbjct: 553 NACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYAS 591



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 137/310 (44%), Gaps = 36/310 (11%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G++++  +   G+ R   +   LI  + +      AR +FD +   +++ W  +  A
Sbjct: 259 LAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNA 318

Query: 154 YARRG--------------------------YHQ-----EAVTVFHEMHIQGLKQNIFVI 182
           YA+ G                          Y Q     EAV +F  M  +G++     +
Sbjct: 319 YAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGL 378

Query: 183 PSVLKACGHLSDIGTGEKIH-SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
            SVL AC  L  +  G  I+ + V+         + ++ ID+Y+KCG  + A K+F EM 
Sbjct: 379 VSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMA 438

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301
           E+++V+ N+M+  +   G + E L L E++    + P+ +T+  L+S  S SG      +
Sbjct: 439 ERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRR 498

Query: 302 LFQLMR-AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
            F+ M+   G+EP    +  +I  L      +EAF+  K M  +      A   ++L AC
Sbjct: 499 YFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPME---TDEAGWGALLNAC 555

Query: 361 ASAANMRRGK 370
               N+  G+
Sbjct: 556 RMYGNVEIGE 565


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 158/493 (32%), Positives = 256/493 (51%), Gaps = 42/493 (8%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNIHHARM 134
           S +  ++ + +  R   ++  + +H Q++ +GL      A+KL+ F       ++ +AR 
Sbjct: 14  SESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYART 73

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +FD I + N   W  +   Y+     +EA+ ++H M    +  N +  P +LKAC  +S 
Sbjct: 74  VFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSA 133

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
               ++IH+ ++K  FG++ +  +SL+++YSK G ++ A+ +FD++ ++D          
Sbjct: 134 SEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD---------- 183

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
                                     V+WN++I G++K G+  M  ++F  M     E +
Sbjct: 184 -------------------------TVSWNSMIDGYTKCGEIEMAYEIFNHMP----ERN 214

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374
           ++SWTS+ISG V      EA + F  M + G    +  + S L ACA    + +GK IH 
Sbjct: 215 IISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHA 274

Query: 375 CAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
                 +E D  +   L+DMYAKCG + EA  +F KM E+    W +MI G A HG   E
Sbjct: 275 YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGRE 334

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A+E F +M+    + + ++FT +LTAC H GLV   + LF  M+  +   P  EHY CMV
Sbjct: 335 ALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMV 394

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
           DLLGRAG L EA E+I+ M  +P+  +WGALL AC  HGN+EL +   K L +++P    
Sbjct: 395 DLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGG 454

Query: 554 NNMLLTDLYANAG 566
             + L  ++A AG
Sbjct: 455 RYIHLASIHAAAG 467



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 180/375 (48%), Gaps = 17/375 (4%)

Query: 86  EIYIRDRAL----QSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIP 140
           EIY  +  L    +SG I  A+L+   + +   ++   +I  YT+C  I  A  +F+ +P
Sbjct: 152 EIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMP 211

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           + NI  W ++       G  +EA+ +FH M   G+K +   + S L+AC  L  +  G+ 
Sbjct: 212 ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKW 271

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           IH+ + KH    D  +   LIDMY+KCG +E+A +VF +M EK +    AM+SGY   G 
Sbjct: 272 IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR 331

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWT 319
             EAL    ++ T  V+PN +T+  +++  S +G       LF+ M R  G +P +  + 
Sbjct: 332 GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYG 391

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
            ++  L       EA +  + M  +   P +A   ++L AC    N+  GK+I G  ++ 
Sbjct: 392 CMVDLLGRAGLLKEAEELIENMPVK---PNAAIWGALLNACHIHGNLELGKQI-GKILIQ 447

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC---ANHGYCDEAI 436
              G       L  ++A  G  ++A  +  +M E+      S + GC   + +G   E +
Sbjct: 448 VDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV----SKLPGCSVISVNGTAHEFL 503

Query: 437 ELFNQMEERKKLDHL 451
                  + K++DH+
Sbjct: 504 AGDESHPQIKEIDHM 518


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 164/444 (36%), Positives = 246/444 (55%), Gaps = 50/444 (11%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG--EKIHSLVLKHSFGTDAF 215
           G  ++A+  F  M     +++ F    ++KA   LS  G      +HS V+K     D F
Sbjct: 112 GAPRDALAAFSAMP----RRDSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTF 164

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV----AMNAMV------------------- 252
           V ++LID YSK G    A+KVFDEM E+D+V    AM AMV                   
Sbjct: 165 VGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKD 224

Query: 253 --------SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
                    GY + G    A  L + +     + NVV+W+T++SG+ K GD  M   +F 
Sbjct: 225 TVSWNTILDGYTKAGEVEAAFELFQRM----PERNVVSWSTMVSGYCKKGDLEMARVIFD 280

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M +K    ++V+WT ++S        DEA   F +M         A + SIL ACA + 
Sbjct: 281 KMPSK----NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESG 336

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMI 423
           ++  GK IH       +    HV +AL+DM+ KCG ++ A  +FD  + ++++V+WNS+I
Sbjct: 337 SLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSII 396

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G A HG+ D+A+ELF QM+++    D ++   VL+AC H+G V+ G+R F+ M+  Y I
Sbjct: 397 GGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGI 456

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           MP+ EHY CM+DLLGR G + EA ++IK+M  EP+  +WG+LL AC+ H N+E AEIA  
Sbjct: 457 MPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVN 516

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            LS+L+P +A N  +L+++YA AG
Sbjct: 517 ELSKLQPSNAGNYAVLSNIYAEAG 540



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 139/330 (42%), Gaps = 71/330 (21%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           + +++ Y +  ++  AR++FD++P  N+  W  +  A A++G   EA  +F +M    ++
Sbjct: 260 STMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVE 319

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            ++  + S+L AC     +  G++IH  V K + G    V ++LIDM+ KCG V +A  V
Sbjct: 320 LDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYV 379

Query: 237 FD-EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           FD E V+KD V+ N+++ G+   G   +AL                              
Sbjct: 380 FDTETVQKDSVSWNSIIGGFAMHGHGDKAL------------------------------ 409

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                +LF  M+ +G  PD V+  +V+S   H    DE    F  M              
Sbjct: 410 -----ELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERD---------YG 455

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           I+P            E +GC               ++D+  + G I EA  L   M  E 
Sbjct: 456 IMPQI----------EHYGC---------------MIDLLGRGGLIKEAVDLIKSMPWEP 490

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEE 444
           N V W S++  C  H   + A    N++ +
Sbjct: 491 NEVIWGSLLSACRLHKNVEYAEIAVNELSK 520


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 164/444 (36%), Positives = 246/444 (55%), Gaps = 50/444 (11%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG--EKIHSLVLKHSFGTDAF 215
           G  ++A+  F  M     +++ F    ++KA   LS  G      +HS V+K     D F
Sbjct: 419 GAPRDALAAFSAMP----RRDSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTF 471

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV----AMNAMV------------------- 252
           V ++LID YSK G    A+KVFDEM E+D+V    AM AMV                   
Sbjct: 472 VGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKD 531

Query: 253 --------SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
                    GY + G    A  L + +     + NVV+W+T++SG+ K GD  M   +F 
Sbjct: 532 TVSWNTILDGYTKAGEVEAAFELFQRM----PERNVVSWSTMVSGYCKKGDLEMARVIFD 587

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M +K    ++V+WT ++S        DEA   F +M         A + SIL ACA + 
Sbjct: 588 KMPSK----NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESG 643

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTVTWNSMI 423
           ++  GK IH       +    HV +AL+DM+ KCG ++ A  +FD  + ++++V+WNS+I
Sbjct: 644 SLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSII 703

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G A HG+ D+A+ELF QM+++    D ++   VL+AC H+G V+ G+R F+ M+  Y I
Sbjct: 704 GGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGI 763

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
           MP+ EHY CM+DLLGR G + EA ++IK+M  EP+  +WG+LL AC+ H N+E AEIA  
Sbjct: 764 MPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVN 823

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
            LS+L+P +A N  +L+++YA AG
Sbjct: 824 ELSKLQPSNAGNYAVLSNIYAEAG 847



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 71/328 (21%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           + +++ Y +  ++  AR++FD++P  N+  W  +  A A++G   EA  +F +M    ++
Sbjct: 567 STMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVE 626

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            ++  + S+L AC     +  G++IH  V K + G    V ++LIDM+ KCG V +A  V
Sbjct: 627 LDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYV 686

Query: 237 FD-EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295
           FD E V+KD V+ N+++ G+   G   +AL                              
Sbjct: 687 FDTETVQKDSVSWNSIIGGFAMHGHGDKAL------------------------------ 716

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                +LF  M+ +G  PD V+  +V+S   H    DE    F  M              
Sbjct: 717 -----ELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERD---------YG 762

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ER 414
           I+P            E +GC               ++D+  + G I EA  L   M  E 
Sbjct: 763 IMPQI----------EHYGC---------------MIDLLGRGGLIKEAVDLIKSMPWEP 797

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM 442
           N V W S++  C  H   + A    N++
Sbjct: 798 NEVIWGSLLSACRLHKNVEYAEIAVNEL 825


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 266/530 (50%), Gaps = 50/530 (9%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           +P  ++  +       AL  G+ +HAQ +  G      +   L+  Y +C  +  A+ +F
Sbjct: 200 NPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVF 259

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           + +   ++  W  L           EA+ +FHE      K       +V+K C +L  + 
Sbjct: 260 NWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGY 255
              ++HS VLKH F     V+++L D YSKCG +  A  +F      +++V+  A++SG 
Sbjct: 320 LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379

Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNT------------------------------ 285
           +Q G    A+ L   +   RV PN  T++                               
Sbjct: 380 IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGT 439

Query: 286 -LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT------F 338
            L++ +SK G       +F+++  K    DVV+W++++S      C+ +A D       F
Sbjct: 440 ALLASYSKFGSTEDALSIFKMIEQK----DVVAWSAMLS------CHAQAGDCEGATYLF 489

Query: 339 KEMLSQGFCPTSATISSILPACA-SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
            +M  QG  P   TISS++ ACA  +A + +G++ H  +I       + V SALV MY++
Sbjct: 490 NKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSR 549

Query: 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAV 456
            G I  A+ +F++ ++R+ V+WNSMI G A HGY  +AIE F QME    ++D ++F AV
Sbjct: 550 KGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAV 609

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           +  C H GLV  GQ+ F+ M   +KI P  EHYACMVDL  RAG+L E   +I+ M    
Sbjct: 610 IMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPA 669

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              VW  LLGAC+ H N+EL + +A  L  LEP  ++  +LL+++YA AG
Sbjct: 670 GAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAG 719



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 215/479 (44%), Gaps = 43/479 (8%)

Query: 89  IRDRALQSGKILHAQLIVSGLAR-LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           + DR L  G+ LH   +  G  R      T L+  Y +C ++     +F+ +PK N+  W
Sbjct: 112 VPDRVL--GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
            +L    A    H E + +F  M  +G+  N F   SVL A      +  G+++H+  +K
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK 229

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
               +  FV +SL++MY+KCG VE AK VF+ M  +D+V+ N +++G        EAL L
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQL 289

Query: 268 VEEIGTPRVKPNVVTWNTLIS---------------------GFSKSGDQVMV-----SK 301
             E      K    T+ T+I                      GF  +G+ +       SK
Sbjct: 290 FHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSK 349

Query: 302 LFQLMRAKGV------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
             +L  A  +        +VVSWT++ISG + N     A   F  M      P   T S+
Sbjct: 350 CGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSA 409

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
           +L A  S        +IH   I    +    V +AL+  Y+K G   +A ++F  + +++
Sbjct: 410 MLKASLSILP----PQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKD 465

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTAC-CHVGLVELGQRLF 473
            V W++M+   A  G C+ A  LFN+M  +  K +  + ++V+ AC C    V+ G R F
Sbjct: 466 VVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQG-RQF 524

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           + +  KY+        + +V +  R G +  A +++    T+ DL  W +++     HG
Sbjct: 525 HAISIKYRYHDAICVSSALVSMYSRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQHG 582



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 208/447 (46%), Gaps = 53/447 (11%)

Query: 132 ARMLFDEIPKTNIHRWIALTGA------YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           AR   DEIP+ +     A  GA      YARRG   E +  F      G+  +   +  V
Sbjct: 51  ARYPLDEIPRRD-----AAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCV 105

Query: 186 LKACGHLSDIGTGEKIHSLVLK--HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
           LKAC  + D   GE++H L +K  H  G +    +SL+DMY KCGSV +  +VF+ M +K
Sbjct: 106 LKACRSVPDRVLGEQLHCLCVKCGHDRG-EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKK 164

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------- 294
           ++V   ++++G     + +E + L   +    + PN  T+ +++S  +  G         
Sbjct: 165 NVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVH 224

Query: 295 ---------DQVMVSKLFQLMRAKG--VEP-----------DVVSWTSVISGLVHNFCND 332
                      V V      M AK   VE            D+VSW ++++GL  N C  
Sbjct: 225 AQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECEL 284

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           EA   F E  +     T +T ++++  CA+   +   +++H C +  G     +V +AL 
Sbjct: 285 EALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALA 344

Query: 393 DMYAKCGFISEARTLFDKMS-ERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           D Y+KCG +++A  +F   +  RN V+W ++I GC  +G    A+ LF++M E+R   + 
Sbjct: 345 DAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNE 404

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
            +++A+L A   +   ++  ++   ++  Y+ +P       ++    + G   +A  + K
Sbjct: 405 FTYSAMLKASLSILPPQIHAQV---IKTNYQHIPSVG--TALLASYSKFGSTEDALSIFK 459

Query: 511 TMSTEPDLFVWGALLGACKNHGNIELA 537
            M  + D+  W A+L      G+ E A
Sbjct: 460 -MIEQKDVVAWSAMLSCHAQAGDCEGA 485



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 169/389 (43%), Gaps = 39/389 (10%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           ++ + Y+  I++    + L   + LH+ ++  G      + T L   Y++C  +  A  +
Sbjct: 300 MTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNI 359

Query: 136 FDEIPKT-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           F     + N+  W A+     + G    AV +F  M    +  N F   ++LKA   LS 
Sbjct: 360 FSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA--SLSI 417

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +    +IH+ V+K ++     V ++L+  YSK GS E A  +F  + +KD+VA +AM+S 
Sbjct: 418 L--PPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSC 475

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS-------------------KSGD 295
           + Q G    A  L  ++    +KPN  T +++I   +                   +  D
Sbjct: 476 HAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHD 535

Query: 296 QVMVSKLF-------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
            + VS                Q++  +  + D+VSW S+ISG   +  + +A +TF++M 
Sbjct: 536 AICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQME 595

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSALVDMYAKCGFI 401
           + G      T  +++  C     +  G++     +    +   +   + +VD+Y++ G +
Sbjct: 596 ASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKL 655

Query: 402 SEARTLFDKMS-ERNTVTWNSMIFGCANH 429
            E  +L   M      + W +++  C  H
Sbjct: 656 DETMSLIRDMPFPAGAMVWRTLLGACRVH 684


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 163/509 (32%), Positives = 267/509 (52%), Gaps = 40/509 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L + + LHA  I +  +    + T ++  Y +  N+  AR  F  +P  N+    A+   
Sbjct: 268 LSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVG 327

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             R G   EA+ +F  M   G+  ++  +  V  AC  +     G ++H L +K  F  D
Sbjct: 328 LVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVD 387

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++++D+Y KC ++ +A  VF EM ++D V+ NA+++   Q     + +  + E+  
Sbjct: 388 VCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLR 447

Query: 274 PRVKPNVVTW-----------------------------------NTLISGFSKSGDQVM 298
             ++P+  T+                                   +T++  + K G    
Sbjct: 448 SGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITE 507

Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
             KL    R  G E  +VSW S+ISG      ++EA   F EML  G  P   T +++L 
Sbjct: 508 AQKLHD--RIGGQE--LVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLD 563

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
            CA+ A +  GK+IHG  I   + GD ++ S LVDMYAKCG + ++  +F+K  + + V+
Sbjct: 564 TCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVS 623

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+MI G A HG   EA+E+F +M+    + +H +F AVL AC HVGL++ G + F++M 
Sbjct: 624 WNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMT 683

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            +YK++P+ EH+ACMVD+LGR+    EA E I++M  E D  VW  LL  CK   ++E+A
Sbjct: 684 SRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVA 743

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
           E AA ++  L+P+ A+  +LL+++YA +G
Sbjct: 744 ETAASNVLRLDPDDASVYILLSNVYAGSG 772



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 224/472 (47%), Gaps = 34/472 (7%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L  G  +HA  + +GL    +  + L+  Y +C+++  A   F  + + N   W A    
Sbjct: 167 LALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAG 226

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             +   +   + +F +M   GL  +     S  ++C  +  + T  ++H+  +K+ F +D
Sbjct: 227 CVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSD 286

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             V ++++D+Y+K G++  A++ F  +   ++   NAM+ G V+ GL  EA+ L + +  
Sbjct: 287 RVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTR 346

Query: 274 PRVKPNVVTWNTLISGFS----------------KSGDQVMV----------SKLFQLMR 307
             V  +V++ + + S  +                KSG  V V           K   L+ 
Sbjct: 347 SGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVE 406

Query: 308 AKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
           A  V     + D VSW ++I+ L  N C ++      EML  G  P   T  S+L ACA 
Sbjct: 407 AYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAG 466

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
             ++  G  +HG AI  G+  D  V S +VDMY KCG I+EA+ L D++  +  V+WNS+
Sbjct: 467 LQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSI 526

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I G +     +EA   F++M +   K DH ++  VL  C ++  +ELG+++   +  K +
Sbjct: 527 ISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQII-KQE 585

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           ++      + +VD+  + G + ++  M +  + + D   W A++     HG 
Sbjct: 586 MLGDEYISSTLVDMYAKCGNMPDSLLMFEK-ARKLDFVSWNAMICGYALHGQ 636



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 135/578 (23%), Positives = 238/578 (41%), Gaps = 111/578 (19%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP------------ 140
           AL +G+  HA+++VSG    T ++  L+  Y  C    HA  +FD +P            
Sbjct: 34  ALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLT 93

Query: 141 -------------------KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
                                ++  W  L   Y + G  + +V +  EM  +G+  +   
Sbjct: 94  AYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTT 153

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
           +  +LK+CG L D+  G +IH+L +K    TD    S+L+DMY KC S++ A + F  M 
Sbjct: 154 LAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMG 213

Query: 242 EKDIVAMNAMVSGYVQRGLATEALNL---VEEIGTPRVKP-------------------- 278
           E++ V+  A ++G VQ    T  + L   ++ +G    +P                    
Sbjct: 214 ERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQ 273

Query: 279 -------NV-----VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                  NV     V    ++  ++K+G+ V   + F  +    VE    +  +++ GLV
Sbjct: 274 LHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVE----TCNAMMVGLV 329

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386
                 EA   F+ M   G      ++S +  ACA      +G ++H  A+  G + D+ 
Sbjct: 330 RTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVC 389

Query: 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC-ANHGYCDEAIELFNQMEER 445
           VR+A++D+Y KC  + EA  +F +M +R++V+WN++I     N  Y D    L   +   
Sbjct: 390 VRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSG 449

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505
            + D  ++ +VL AC  +  +E G  + +    K  +       + +VD+  + G + EA
Sbjct: 450 MEPDDFTYGSVLKACAGLQSLEYG-LVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEA 508

Query: 506 YEM----------------------------------IKTMSTEPDLFVWGALLGACKNH 531
            ++                                  +  M  +PD F +  +L  C N 
Sbjct: 509 QKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANL 568

Query: 532 GNIELAEIAAKHLSELEPESAANNML---LTDLYANAG 566
             IEL +    H   ++ E   +  +   L D+YA  G
Sbjct: 569 ATIELGK--QIHGQIIKQEMLGDEYISSTLVDMYAKCG 604



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 139/314 (44%), Gaps = 41/314 (13%)

Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
           S + TG+  H+ +L   F    FV + L+ MY++CG    A  VFD M  +D        
Sbjct: 33  SALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRD-------- 84

Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312
                                       V+WNT+++ +  +GD    + LF  M     +
Sbjct: 85  ---------------------------TVSWNTMLTAYVHAGDTDTAASLFGTMP----D 113

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           PDVVSW ++ISG   +     +     EM  +G      T++ +L +C    ++  G +I
Sbjct: 114 PDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQI 173

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H  A+  G+E D+   SALVDMY KC  + +A   F  M ERN+V+W + I GC  +   
Sbjct: 174 HALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQY 233

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
              +ELF QM+     +   ++ +   +C  +  +   ++L     +      R    A 
Sbjct: 234 TRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTA- 292

Query: 492 MVDLLGRAGRLAEA 505
           +VD+  +AG L +A
Sbjct: 293 IVDVYAKAGNLVDA 306



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           ++L+ G ++H + I SGL     +++ ++  Y +C  I  A+ L D I    +  W ++ 
Sbjct: 468 QSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSII 527

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             ++     +EA   F EM   G+K + F   +VL  C +L+ I  G++IH  ++K    
Sbjct: 528 SGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEML 587

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D ++ S+L+DMY+KCG++  +  +F++  + D V+ NAM+ GY   G   EAL + E +
Sbjct: 588 GDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERM 647

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
               V PN  T+  ++   S  G      + F LM ++
Sbjct: 648 QRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSR 685



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 345 GFCPTSATISSILPACASAAN--MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           GF  T AT S +   CASA    +  G+  H   +V G      V + L+ MYA+CG  +
Sbjct: 13  GFVAT-ATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTA 71

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462
            A  +FD M  R+TV+WN+M+    + G  D A  LF  M +    D +S+  +++  C 
Sbjct: 72  HAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDP---DVVSWNTLISGYCQ 128

Query: 463 VGLVELGQRLFNMMQEKYKIMPRT 486
            G+      L   M  +   + RT
Sbjct: 129 HGMFRNSVGLSMEMSRRGVALDRT 152


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 155/507 (30%), Positives = 268/507 (52%), Gaps = 33/507 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           +L+ G  +H Q++  G      + T LI  Y +C ++  A   F  +   ++  W A+  
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           A  +      A  ++  M + G+  N   + +V  A G    +  G+ I+SLV      +
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  V++S ++M+   G +  A+++F++MV++D+V  N +++ YVQ     EA+ L   + 
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQ 300

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV---------------- 316
              +K N +T+  +++ ++          + +L++  G + DVV                
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 317 ---------------SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
                          +WT +      N    EA   F+EM  +G  PTSAT+ ++L  CA
Sbjct: 361 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 420

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
             A +++G++IH   I  G   ++ V +AL++MY KCG ++EAR++F+KM++R+ + WNS
Sbjct: 421 HLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNS 480

Query: 422 MIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           M+   A HGY DE ++LFNQM+ + +K D +SF +VL+A  H G V  G + F  M + +
Sbjct: 481 MLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 540

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEI 539
            I P  E Y C+VDLLGRAGR+ EA +++  +S   PD  +W  LLGAC+ H   + A+ 
Sbjct: 541 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKA 600

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
           AA+ + E +P  +   ++L+++YA AG
Sbjct: 601 AAEQVLERDPSHSGAYVVLSNVYAAAG 627



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 223/477 (46%), Gaps = 42/477 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + +  G+ +H  +   G  +   +   LI  Y +C ++  A+ +F+ + + ++  W  + 
Sbjct: 19  KNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMI 78

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G Y ++G +  A+ +F++M  + +        ++L AC     +  G +IH  +L+  F 
Sbjct: 79  GIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFE 138

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D FV ++LI+MY+KCGSV  A   F  +  +D+V+  AM++  VQ      A  L   +
Sbjct: 139 GDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRM 198

Query: 272 GTPRVKPNVVTWNTLISGFS--------------------KSGDQVMVS----------- 300
               V PN +T  T+ + +                     +S  +VM S           
Sbjct: 199 QLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLL 258

Query: 301 ----KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               +LF+ M    V+ DVV+W  VI+  V N    EA   F  +   G      T   +
Sbjct: 259 GDARRLFEDM----VDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLM 314

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L    S  ++ +GK IH      G + D+ V +AL+ +Y +C    +A  +F  M  ++ 
Sbjct: 315 LNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDV 374

Query: 417 VTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
           +TW  M    A +G+  EA++LF +M+ E ++    +  AVL  C H+  ++ G+++ + 
Sbjct: 375 ITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSH 434

Query: 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           + E    M      A ++++ G+ G++AEA  + + M+   D+ VW ++LGA   HG
Sbjct: 435 IIENGFRMEMVVETA-LINMYGKCGKMAEARSVFEKMAKR-DILVWNSMLGAYAQHG 489



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 164/363 (45%), Gaps = 71/363 (19%)

Query: 85  IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI 144
           + +Y    +L  GK++H  +  +G  R   +AT L++ Y  C+    A  +F ++   ++
Sbjct: 315 LNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDV 374

Query: 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
             W  +  AYA+ G+ +EA+ +F EM ++G +     + +VL  C HL+ +  G +IHS 
Sbjct: 375 ITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSH 434

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           ++++ F  +  V ++LI+MY KCG + +A+ VF++M ++DI+  N+M+  Y Q G   E 
Sbjct: 435 IIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDET 494

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
           L L  ++     K + V++ +++S  S SG                         SV  G
Sbjct: 495 LQLFNQMQLDGEKADAVSFVSVLSALSHSG-------------------------SVTDG 529

Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
                     +  F  ML Q F        SI P            E++GC         
Sbjct: 530 ----------YQYFVAML-QDF--------SITPT----------PELYGC--------- 551

Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQM 442
                 +VD+  + G I EA  +  K+S    + + W +++  C  H   D+A     Q+
Sbjct: 552 ------VVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQV 605

Query: 443 EER 445
            ER
Sbjct: 606 LER 608



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 172/391 (43%), Gaps = 36/391 (9%)

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
            K +     ++L+ C    ++  G ++H  V    F  +  V   LI MY++CGSV +A+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS- 293
           +VF+ +  KD+ A   M+  Y Q+G    AL +  ++    V P  VT+  +++  + + 
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 294 ------------------GDQVMVSKLFQLMRAKGV------------EPDVVSWTSVIS 323
                             GD  + + L  +    G               DVVSWT++I+
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
             V +     A   ++ M   G  P   T+ ++  A      +  GK I+       +E 
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI-FGCANHGYCDEAIELFNQM 442
           D+ V ++ ++M+   G + +AR LF+ M +R+ VTWN +I F   N  +  EA+ LF ++
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENF-GEAVRLFGRL 299

Query: 443 EERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
           ++   K + ++F  +L     +  +  G+ +  +++E           A M  L GR   
Sbjct: 300 QQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALM-SLYGRCEA 358

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
             +A+++   M ++ D+  W  +  A   +G
Sbjct: 359 PGQAWKIFVDMGSK-DVITWTVMCVAYAQNG 388



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 127/277 (45%), Gaps = 18/277 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           ALQ G+ +H+ +I +G      + T LI  Y +C  +  AR +F+++ K +I  W ++ G
Sbjct: 424 ALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLG 483

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH-SFG 211
           AYA+ GY+ E + +F++M + G K +     SVL A  H   +  G +    +L+  S  
Sbjct: 484 AYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSIT 543

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM---VEKDIVAMNAMVSGYVQRGLATEALNLV 268
               +   ++D+  + G +++A  +  ++   +   I+ M  +  G  +    T+     
Sbjct: 544 PTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLL--GACRTHNKTDQAKAA 601

Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
            E    R   +   +  L + ++ +GD   V+++ +LMR++GV+ +    +  I   VH 
Sbjct: 602 AEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHE 661

Query: 329 FCNDE-----------AFDTFK-EMLSQGFCPTSATI 353
           F   +             D    EM + G+ P +  I
Sbjct: 662 FLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMI 698



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 9/196 (4%)

Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
           F P +A   ++L  C+SA N+  G+ +H      G E +  V   L+ MYA+CG + EA+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVG 464
            +F+ +  ++   W  MI      G  D A+ +F QM+E   +   +++ A+L AC    
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 465 LVELGQRLF-NMMQEKYK--IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
            ++ G  +   ++Q+ ++  +   T     ++++  + G +  A++  K +    D+  W
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGT----ALINMYNKCGSVRGAWDSFKRLE-HRDVVSW 175

Query: 522 GALLGACKNHGNIELA 537
            A++ AC  H    LA
Sbjct: 176 TAMIAACVQHDQFALA 191


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 235/427 (55%), Gaps = 39/427 (9%)

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           G++ + F  P ++KAC  L     G +IH  V+K  + +  F+ +SLI MY KC   E +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN-------------- 279
           ++VFDEM +K+ V+ +A++   +Q     E  +L  ++ +   +P+              
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSH 124

Query: 280 --------VVTWNTL----------ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321
                   VV  N L             F++ G   +  KLF  + +K    D+V+W + 
Sbjct: 125 EEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSK----DLVTWATT 180

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I   V      EA    K+M+ QG  P + T+  ++ AC++ A+ +    +HG  I  G 
Sbjct: 181 IEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHG-IITTGF 239

Query: 382 EGD--LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
             +  L V +AL+D+Y KCG ++ AR +FD M ERN +TW++MI G   HG+  EA+ LF
Sbjct: 240 FYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLF 299

Query: 440 NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499
           +QM+   K DH++F ++L+AC H GLV  G   FN M   + + PR EHYACMVD+LGRA
Sbjct: 300 DQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRA 359

Query: 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559
           G+L EA + I+ M   P+  VWGALLGAC+ H N++LAE+ A+ L +L+P +A   ++L 
Sbjct: 360 GKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILY 419

Query: 560 DLYANAG 566
           ++Y   G
Sbjct: 420 NIYTLTG 426



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 165/382 (43%), Gaps = 46/382 (12%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R  + G  +H  ++  G      I+  LIT Y +C     +R +FDE+P  N   W A+ 
Sbjct: 24  RHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAII 83

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           GA  +    +E  ++F +M  +G + +     ++L A   +      + ++ +V+++   
Sbjct: 84  GACLQDDRCKEGFSLFRQMLSEGSRPSR---GAILNAMACVRSHEEADDVYRVVVENGLD 140

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            D  V S+   M+++CG VE A+K+FD ++ KD+V     +  YV+  +  EAL L++++
Sbjct: 141 FDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQM 200

Query: 272 GTPRVKPNVVTW------------------------------------NTLISGFSKSGD 295
               + P+ +T                                       LI  + K G 
Sbjct: 201 MLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGS 260

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
                K+F  M+    E ++++W+++ISG   +    EA + F +M      P   T  S
Sbjct: 261 LTYARKVFDGMQ----ERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVS 315

Query: 356 ILPACASAANMRRGKE-IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           IL AC+ +  +  G E  +  A   GV       + +VD+  + G + EA    ++M  R
Sbjct: 316 ILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVR 375

Query: 415 -NTVTWNSMIFGCANHGYCDEA 435
            N   W +++  C  H   D A
Sbjct: 376 PNAAVWGALLGACRIHLNVDLA 397



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 101/264 (38%), Gaps = 43/264 (16%)

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           ML  G  P + T   I+ AC+   +   G  IH   +  G +  + + ++L+ MY KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM------------------ 442
              +R +FD+M ++N V+W+++I  C     C E   LF QM                  
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120

Query: 443 ---------------EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
                          E     D    +A        G VE+ ++LF+ +  K  +     
Sbjct: 121 VRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT---- 176

Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTE---PDLFVWGALLGACKNHGNIELAEIAAKHL 544
            +A  ++   +A    EA  ++K M  +   PD      ++ AC    + +LA I    +
Sbjct: 177 -WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGII 235

Query: 545 SE--LEPESAANNMLLTDLYANAG 566
           +      +  A    L DLY   G
Sbjct: 236 TTGFFYNQLLAVETALIDLYVKCG 259


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 152/431 (35%), Positives = 228/431 (52%), Gaps = 46/431 (10%)

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS------------ 229
           +P  LK+C  L     G  +H+L L+     D F  ++L+++Y K  +            
Sbjct: 61  LPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSA 120

Query: 230 --VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
             +E  +KVFDEM EKD+V+ N +V G  + G   EAL LV E+     KP+  T ++++
Sbjct: 121 VVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVL 180

Query: 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDV-------------------------------V 316
             F++  D     +L       G   DV                               +
Sbjct: 181 PIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAI 240

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
            W S+++G   N   DEA   F+ ML  G  P   T SS++PAC + A++  GK++H   
Sbjct: 241 LWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYV 300

Query: 377 IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAI 436
           I  G +G++ + S+L+DMY KCG +S AR +FD++   + V+W +MI G A HG   EA+
Sbjct: 301 IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL 360

Query: 437 ELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
            LF++ME    K +H++F AVLTAC H GLV+ G + FN M + Y I+P  EH+A + D 
Sbjct: 361 VLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADT 420

Query: 496 LGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555
           LGR G+L EAY  I  M  +P   VW  LL ACK H N  LAE  AK + +LEP S  ++
Sbjct: 421 LGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSH 480

Query: 556 MLLTDLYANAG 566
           ++L++ Y+++G
Sbjct: 481 IILSNTYSSSG 491



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 186/400 (46%), Gaps = 29/400 (7%)

Query: 26  SIRRIYFAL-----LSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAA 80
           S+R+++  +     +S   LVL C++S    G+ L  G+  E  ++      SF LS   
Sbjct: 125 SVRKVFDEMPEKDVVSWNTLVLGCAESGRH-GEAL--GLVREM-WRDGCKPDSFTLSSV- 179

Query: 81  YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP 140
               + I+     ++ G  LH     +G      + + LI  Y  C    ++  +FD +P
Sbjct: 180 ----LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLP 235

Query: 141 KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
             +   W ++    A+ G   EA+ +F  M   G+K       S++ ACG+L+ +  G++
Sbjct: 236 VRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQ 295

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
           +H+ V++  F  + F+ SSLIDMY KCG+V  A+++FD +   DIV+  AM+ G+   G 
Sbjct: 296 LHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGP 355

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWT 319
           A EAL L + +    +KPN +T+  +++  S +G      K F  M    G+ P +    
Sbjct: 356 AREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHA 415

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
           ++   L      +EA++    M  +   PT++  S++L AC    N    +E+       
Sbjct: 416 ALADTLGRPGKLEEAYNFISGMKIK---PTASVWSTLLRACKVHKNTVLAEEVAKKIF-- 470

Query: 380 GVEGDLHVRSA-----LVDMYAKCGFISEARTLFDKMSER 414
               DL  RS      L + Y+  G  +EA  L   M ++
Sbjct: 471 ----DLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKK 506



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 23/294 (7%)

Query: 78  PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
           P  +S  I       +L  GK LHA +I  G      I++ LI  Y +C N+  AR +FD
Sbjct: 274 PVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFD 333

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197
            I   +I  W A+   +A  G  +EA+ +F  M +  LK N     +VL AC H   +  
Sbjct: 334 RIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDK 393

Query: 198 GEKIHSLVLKHSFGTDAFVV--SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV--S 253
           G K  + +  H +G    +   ++L D   + G +E+A      M  K   ++ + +  +
Sbjct: 394 GWKYFNSMSDH-YGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRA 452

Query: 254 GYVQRG--LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
             V +   LA E    + ++    +  +++  NT    +S SG     + L + MR KG+
Sbjct: 453 CKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNT----YSSSGRWNEAAHLRKSMRKKGM 508

Query: 312 EPD-VVSWTSVISG----LVHNFCND------EAFDTFKE-MLSQGFCPTSATI 353
           + +   SW  V +     + H+  +       +A + F E M+ QG+ P +  +
Sbjct: 509 QKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDV 562



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 17/201 (8%)

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG------------ 399
           ++   L +CA+      G  +H  A+  G   D    +AL+++Y K              
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 400 --FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAV 456
              +   R +FD+M E++ V+WN+++ GCA  G   EA+ L  +M  +  K D  + ++V
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L        V  G  L      +          + ++D+     R   + ++   +    
Sbjct: 180 LPIFAEGADVRRGMELHG-FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR- 237

Query: 517 DLFVWGALLGACKNHGNIELA 537
           D  +W ++L  C  +G+++ A
Sbjct: 238 DAILWNSMLAGCAQNGSVDEA 258


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 162/506 (32%), Positives = 271/506 (53%), Gaps = 57/506 (11%)

Query: 76  LSPAAYSERIE--IYIRDRALQSGKIL---HAQLIVSGLARLTQIATKLITFYTECQNIH 130
           L+P++ + ++E  +    RA  S + L   HA  +   L++ + +AT+++        + 
Sbjct: 3   LAPSSATRQVEDAVMASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVA 62

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM-------HIQGLKQNIFVIP 183
           HA  +F ++ + N+H   A+  AYA+   H +A+TV+  M        I     + F  P
Sbjct: 63  HATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYP 122

Query: 184 SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK 243
            +LKACG L  +  G+++H  V++    ++A V +SLI+MY++ G +  A+KVFD M E+
Sbjct: 123 FLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQER 182

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           D                                   VV+WNT+IS  ++ G       +F
Sbjct: 183 D-----------------------------------VVSWNTVISAHARLGQMRKARAVF 207

Query: 304 QLMRAKGVEPD--VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
             M      PD  VVSWT+++SG         A + F+ M  +GF P   +I ++LPACA
Sbjct: 208 NSM------PDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACA 261

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
               +  G+ I+       +  + +V +ALV+MYAKCG I +A  LF+ M+E++ ++W++
Sbjct: 262 QLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWST 321

Query: 422 MIFGCANHGYCDEAIELFNQMEERK--KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           M+ G A HG   EA++LF +ME +   K + ++F  +L+AC H GL++ G   F+ M + 
Sbjct: 322 MVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDV 381

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           Y I P  EHY C+VDLL R+G++    ++I  M    D  +WG++L AC++HG+++ A +
Sbjct: 382 YGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVL 441

Query: 540 AAKHLSELEPESAANNMLLTDLYANA 565
           AA+ L  LEPE   N ++L ++YA A
Sbjct: 442 AAERLVALEPEDVGNLVMLANVYAAA 467


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 250/473 (52%), Gaps = 14/473 (2%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HAQ+I+  L+  + I T+LI+  +  ++I+H+  +F+     N+  + AL        +
Sbjct: 100 IHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSH 159

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
              A+  F  M   G+K +    P VLK+   L     G  IH ++L+     D+FV  S
Sbjct: 160 FFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVS 219

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEK-----DIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274
           L+DMY K   +  A KVFDE  E+       +  N ++ G  + G   +A+ L + +   
Sbjct: 220 LVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP-- 277

Query: 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA 334
             K   V+W+TLI GF+K+GD     +LF  M     E +VVSWT+++ G   N  +++A
Sbjct: 278 --KKENVSWSTLIDGFAKNGDMDRAMELFDQMP----EKNVVSWTTMVDGFSRNGDSEKA 331

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
              F +ML +G  P + TI S L ACA    +  G  IH      G+     + +ALVDM
Sbjct: 332 LSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDM 391

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSF 453
           YAKCG I  A  +F +  +++  TW  MI+G A HG+ ++AI  F QM     K D + F
Sbjct: 392 YAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVF 451

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
            A+LTAC H G V++G   F+ M+  Y I P  +HY  +VD+LGR+G+L EA   I+ M 
Sbjct: 452 LALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMP 511

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
             PD  +WGAL  AC+ H   ++A+ A   L +LEP    N + L++ YA  G
Sbjct: 512 MNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALG 564



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 168/364 (46%), Gaps = 10/364 (2%)

Query: 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
           +IH+ ++ H+  + + + + LI   S   S+  +  VF+    K++   NA++ G     
Sbjct: 99  QIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNS 158

Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
               A+     +    +KP+ +T+  ++   +      +   +  ++   G+E D     
Sbjct: 159 HFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRV 218

Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL-PACASAANMRRGKEIHGCAIV 378
           S++   V       AF  F E   +    +SA + ++L   C  A +M++  ++      
Sbjct: 219 SLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFK---A 275

Query: 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIEL 438
           M  + ++   S L+D +AK G +  A  LFD+M E+N V+W +M+ G + +G  ++A+ +
Sbjct: 276 MPKKENVS-WSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSM 334

Query: 439 FNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
           F++M EE  + +  +  + L+AC  +G +E G R+   +++    +      A +VD+  
Sbjct: 335 FSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTA-LVDMYA 393

Query: 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANN 555
           + G +  A E+    + +  +  W  ++     HG+ E A    K +  + ++P+     
Sbjct: 394 KCGNIESASEVFGE-TEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFL 452

Query: 556 MLLT 559
            LLT
Sbjct: 453 ALLT 456



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            L++G  +H  +  +GL     + T L+  Y +C NI  A  +F E  + +I  W  +  
Sbjct: 362 GLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIW 421

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHSFG 211
            +A  G+ ++A+  F +M   G+K +  V  ++L AC H   +  G     S+ L +   
Sbjct: 422 GWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIE 481

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMV---SGYVQRGLATEALNL 267
                 + ++DM  + G +++A +  + M +  D V   A+      + +  +A  ALN 
Sbjct: 482 PSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNK 541

Query: 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV-ISGLV 326
           + ++  P    N +    L + ++  G      ++  LM+ +GV  +   W+ + + G V
Sbjct: 542 LLKL-EPTHTGNYI---FLSNAYAALGQWEDAERVRVLMQNRGVHKN-SGWSCIEVEGQV 596

Query: 327 HNFCNDE 333
           H F + +
Sbjct: 597 HRFVSGD 603


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 156/449 (34%), Positives = 246/449 (54%), Gaps = 40/449 (8%)

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           + T L+  Y  C  +  AR +FD +   ++  W  +  +Y +   ++EA+  F +M   G
Sbjct: 107 VRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSG 166

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +  +  ++ +VL ACGH+  + TG+ IHS +L      +A + S+LI++Y+ C S+E A+
Sbjct: 167 VLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAE 226

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
           K+++ M  KD+V+  AMV GY        A N   EI                       
Sbjct: 227 KLYNGMPRKDLVSSTAMVFGY--------ARNRKFEIA---------------------- 256

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                  +F  M     E DVVSW+++ISG   +   +EA   F +M   G  P   T+ 
Sbjct: 257 -----RYIFDGMP----EKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTML 307

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S++ ACA+  ++ + K IH      G+   LH+ +AL+DM+AKCG I+ A  +F++M ++
Sbjct: 308 SVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQK 367

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
           N +TW SMI   A HG    A+ LF QM  E  + + ++F  +L ACCH GLV  G+ LF
Sbjct: 368 NVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLF 427

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + M ++Y I P+ EHY CMVDLLGRA  + EA  +I++M   P++ VWG+LL AC  HG+
Sbjct: 428 SSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGD 487

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLY 562
           ++L   AAK + +L+P     ++LL+ +Y
Sbjct: 488 LKLGAFAAKKILQLDPNHDGASVLLSKIY 516



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 35/310 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA------------------- 132
           R L++GK +H+ ++VS +     +++ LI  Y  C ++  A                   
Sbjct: 185 RHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMV 244

Query: 133 ------------RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF 180
                       R +FD +P+ ++  W A+   YA      EA+++F++M   G++ +  
Sbjct: 245 FGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEV 304

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
            + SV+ AC +L  +   + IH+ +  +       + ++LIDM++KCG +  A  +F+EM
Sbjct: 305 TMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEM 364

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300
            +K+++   +M++ +   G    AL L E++    V+PN VT+  L+     +G      
Sbjct: 365 PQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGR 424

Query: 301 KLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            LF  M +  G+EP    +  ++  L       EA +  + M  +   P      S+L A
Sbjct: 425 SLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLR---PNVPVWGSLLAA 481

Query: 360 CASAANMRRG 369
           C    +++ G
Sbjct: 482 CWMHGDLKLG 491



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
           C  A    RG   H  A  +G   D  VR+ALV  YA CG + +AR +FD M+ R+ V+W
Sbjct: 82  CVGAGAYVRGA--HALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSW 139

Query: 420 NSMIFG-CANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMM 476
             M+   C    Y  EA+  F +M+    L D L    VL+AC H+  +  G+ + + M
Sbjct: 140 GVMLDSYCQTRNY-KEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYM 197


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/506 (31%), Positives = 264/506 (52%), Gaps = 32/506 (6%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           A + G  LH   + S  A  + I T  +  Y +C+ +  A  +F+ +P      + A+  
Sbjct: 254 AFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIV 313

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            YAR+    +A+ +F  +    L  +   +   L AC  +     G ++H L +K   G 
Sbjct: 314 GYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGF 373

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  V ++++DMY KCG++ +A  +F+EM  +D V+ NA+++ + Q     + L+L   + 
Sbjct: 374 NICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 273 TPRVKPNVVTWNTLISG--------------------------FSKSGDQVMVSKLFQLM 306
              ++P+  T+ +++                            F  S    M  K   LM
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
            A+ +     E   VSW S+ISG      ++ A   F +ML  G  P + T +++L  CA
Sbjct: 494 EAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCA 553

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           + A +  GK+IH   + + +  D+++ S LVDMY+KCG + ++R +F+K  +R+ VTW++
Sbjct: 554 NMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSA 613

Query: 422 MIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           MI   A HG  ++AI LF +M+    K +H  F +VL AC H+G V+ G   F  M   Y
Sbjct: 614 MICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHY 673

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
            + P+ EHY+CMVDLLGR+G++ EA ++I++M  E D  +W  LL  CK  GN+E+AE A
Sbjct: 674 GLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKA 733

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
              L +L+P+ ++  +LL ++YA  G
Sbjct: 734 FNSLLQLDPQDSSAYVLLANVYAIVG 759



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 135/579 (23%), Positives = 243/579 (41%), Gaps = 111/579 (19%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA-----RM------------ 134
           +AL  GK +H Q+IV+G      +A  L+ FY +   +++A     RM            
Sbjct: 20  KALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLI 79

Query: 135 --------------LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF 180
                         LFD +P+ ++  W +L   Y   G +++++ +F  M    +  +  
Sbjct: 80  FGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYA 139

Query: 181 VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240
               +LKAC  + D G G ++H L ++  F  D    S+L+DMYSKC  ++ A +VF EM
Sbjct: 140 TFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREM 199

Query: 241 VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI---SGFS--KSGD 295
            E+++V  +A+++GYVQ     E L L +++    +  +  T+ ++    +G S  K G 
Sbjct: 200 PERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGT 259

Query: 296 QV---------------------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNF 329
           Q+                     M +K  ++  A  V      P   S+ ++I G     
Sbjct: 260 QLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQD 319

Query: 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389
              +A D F+ +          ++S  L AC+       G ++HG A+  G+  ++ V +
Sbjct: 320 QGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVAN 379

Query: 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKL 448
            ++DMY KCG + EA  +F++M  R+ V+WN++I     +    + + LF  M     + 
Sbjct: 380 TILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEP 439

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH------YACMVDLLGRAGRL 502
           D  ++ +V+ AC        GQ+  N   E +  + ++         + +VD+ G+ G L
Sbjct: 440 DDFTYGSVVKACA-------GQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGML 492

Query: 503 AEA----------------------------------YEMIKTMSTEPDLFVWGALLGAC 528
            EA                                  +  +  M   PD + +  +L  C
Sbjct: 493 MEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVC 552

Query: 529 KNHGNIELAEIAAKHLSELEPESAAN-NMLLTDLYANAG 566
            N   IEL +     + +L+  S       L D+Y+  G
Sbjct: 553 ANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCG 591



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 155/336 (46%), Gaps = 47/336 (13%)

Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
           +L+ C +L  +  G+++H+ ++   F    +V + L+  Y K   +  A KVFD M ++D
Sbjct: 12  ILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRD 71

Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
                                              V++WNTLI G++  G+      LF 
Sbjct: 72  -----------------------------------VISWNTLIFGYAGIGNMGFAQSLFD 96

Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
            M     E DVVSW S++S  +HN  N ++ + F  M S       AT + IL AC+   
Sbjct: 97  SMP----ERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIE 152

Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
           +   G ++H  AI MG E D+   SALVDMY+KC  + +A  +F +M ERN V W+++I 
Sbjct: 153 DYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIA 212

Query: 425 GCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK---Y 480
           G   +    E ++LF  M +    +   ++ +V  +C  +   +LG +L     +    Y
Sbjct: 213 GYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAY 272

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
             +  T      +D+  +  R+ +A+++  T+   P
Sbjct: 273 DSIIGT----ATLDMYAKCERMFDAWKVFNTLPNPP 304



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 183/408 (44%), Gaps = 45/408 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  LH   +  GL     +A  ++  Y +C  +  A ++F+E+ + +   W A+  A+ +
Sbjct: 359 GIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQ 418

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                + +++F  M    ++ + F   SV+KAC     +  G +IH  ++K   G D FV
Sbjct: 419 NEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFV 478

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+L+DMY KCG + +A+K+   + EK  V+ N+++SG+  +  +  A     ++    +
Sbjct: 479 GSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGI 538

Query: 277 KPNVVTW-----------------------------------NTLISGFSKSGDQVMVSK 301
            P+  T+                                   +TL+  +SK G+     +
Sbjct: 539 IPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNM----Q 594

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
             +LM  K  + D V+W+++I    ++   ++A + F+EM      P      S+L ACA
Sbjct: 595 DSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACA 654

Query: 362 SAANMRRGKEIHGCAIVM---GVEGDLHVRSALVDMYAKCGFISEARTLFDKMS-ERNTV 417
               + +G  +H    ++   G++  +   S +VD+  + G ++EA  L + M  E + V
Sbjct: 655 HMGYVDKG--LHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDV 712

Query: 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL 465
            W +++  C   G  + A + FN + +    D  ++  +      VG+
Sbjct: 713 IWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGM 760



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 149/313 (47%), Gaps = 5/313 (1%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL  G  +H ++I SG+     + + L+  Y +C  +  A  +   + +     W ++ 
Sbjct: 455 QALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSII 514

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             ++ +   + A   F +M   G+  + +   +VL  C +++ I  G++IH+ +LK    
Sbjct: 515 SGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLH 574

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +D ++ S+L+DMYSKCG+++ ++ +F++  ++D V  +AM+  Y   GL  +A+NL EE+
Sbjct: 575 SDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEM 634

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
               VKPN   + +++   +  G        FQ M +  G++P +  ++ ++  L  +  
Sbjct: 635 QLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQ 694

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390
            +EA    + M    F        ++L  C    N+   ++     + +  + D      
Sbjct: 695 VNEALKLIESM---PFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQ-DSSAYVL 750

Query: 391 LVDMYAKCGFISE 403
           L ++YA  G   E
Sbjct: 751 LANVYAIVGMWGE 763


>gi|347954486|gb|AEP33743.1| chlororespiratory reduction 21, partial [Lobularia maritima]
          Length = 734

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 153/464 (32%), Positives = 257/464 (55%), Gaps = 4/464 (0%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
            ++ GK  HA  IV+GL     + T L+ FY +   I +A M+FD +   ++  W  L  
Sbjct: 270 GIEEGKQSHAVAIVNGLEMDNILGTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLIS 329

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y ++G  + A+ +   M ++ LK +   + +++       D+  G+++    ++HSF +
Sbjct: 330 GYVQQGLVENAIDMCRLMRVENLKFDCVTLSTLMSVAARTRDLKLGKEVLCYCIRHSFES 389

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + S+ +DMY++CGSV  AKKVFD  V+KD++  NA+++ Y + G + EAL L  E+ 
Sbjct: 390 DIGLASTAVDMYAECGSVVDAKKVFDATVQKDLILWNALLAAYTESGHSGEALRLFYEMQ 449

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              V PNV+T N ++     +G      ++F  M++ G+ P+++SWT++++GLV N C++
Sbjct: 450 LQSVPPNVITRNLIMRSLLGNGQVSEAKEMFSQMQSSGIFPNLISWTTMMNGLVQNGCSE 509

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-MGVEGDLHVRSAL 391
           EA    ++ML  G  P + +I+  L ACA+ A++  G  IHG  I        + V ++L
Sbjct: 510 EAILFLRKMLESGARPNTVSIAIALSACANLASLHLGTSIHGYIIRNQQHSSSVLVDTSL 569

Query: 392 VDMYAKCGFISEARTLFDK--MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KL 448
           VDMYAKCG I++A  +F     SE     + +MI   A +G   EA+ L+  +EE   + 
Sbjct: 570 VDMYAKCGDINKAERVFGSKLYSEFELPLYGAMISAYALYGKLKEAVTLYRNLEEIGIEP 629

Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
           D  + T++L+AC + G  +    +F  M  K+ + P  EHY+ MV+LL  AG + +A  +
Sbjct: 630 DDKTITSLLSACKNAGDTKQAIEIFAGMVSKHGMKPCLEHYSLMVELLASAGEVEKALRL 689

Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552
           ++ M  +PD  V  +LL +C      EL E  +KHL   EPE +
Sbjct: 690 VEEMPYKPDARVIQSLLDSCNKQHKTELMEYISKHLVVFEPEKS 733



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 146/534 (27%), Positives = 260/534 (48%), Gaps = 40/534 (7%)

Query: 72  RSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNI 129
           R+  + P  + E ++  + DR L +GK +HA+++ +G   +R   I TKL+ FY +C ++
Sbjct: 45  RNLRIGPEIFGEILQGCVYDRDLSTGKQIHARVLKNGEFYSRNEYIETKLVVFYAKCDDL 104

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189
             +  LF  +   N+  W A+ G  +R G+ ++A+T F EM    +  + FV+P+V KAC
Sbjct: 105 EISESLFSRLRIRNVFSWAAIVGVRSRIGFSEDALTGFVEMLETEISPDNFVVPNVCKAC 164

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G L     G  +H  V+K       FV SSL DMY K G ++ A+KVFDE+ E+++VA N
Sbjct: 165 GVLRWSRFGRSVHGFVMKSRLHDCVFVASSLADMYGKRGFLDDARKVFDEIPERNVVAWN 224

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG--------------- 294
           AM+ GYVQ G+  EA+ L+ ++    ++P  VT +  +S  +  G               
Sbjct: 225 AMMVGYVQNGMNEEAIRLLSDMKEEGIEPTRVTVSMCLSASANIGGIEEGKQSHAVAIVN 284

Query: 295 ----DQVMVSKLF------------QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338
               D ++ + L             +++  + +  DVV+W  +ISG V     + A D  
Sbjct: 285 GLEMDNILGTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVENAIDMC 344

Query: 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           + M  +       T+S+++   A   +++ GKE+    I    E D+ + S  VDMYA+C
Sbjct: 345 RLMRVENLKFDCVTLSTLMSVAARTRDLKLGKEVLCYCIRHSFESDIGLASTAVDMYAEC 404

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVL 457
           G + +A+ +FD   +++ + WN+++      G+  EA+ LF +M+ +    + ++   ++
Sbjct: 405 GSVVDAKKVFDATVQKDLILWNALLAAYTESGHSGEALRLFYEMQLQSVPPNVITRNLIM 464

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM---ST 514
            +    G V   + +F+ MQ    I P    +  M++ L + G   EA   ++ M     
Sbjct: 465 RSLLGNGQVSEAKEMFSQMQSS-GIFPNLISWTTMMNGLVQNGCSEEAILFLRKMLESGA 523

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHL--SELEPESAANNMLLTDLYANAG 566
            P+       L AC N  ++ L      ++  ++    S   +  L D+YA  G
Sbjct: 524 RPNTVSIAIALSACANLASLHLGTSIHGYIIRNQQHSSSVLVDTSLVDMYAKCG 577



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/471 (22%), Positives = 226/471 (47%), Gaps = 12/471 (2%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H  ++ S L     +A+ L   Y +   +  AR +FDEIP+ N+  W A+   Y +
Sbjct: 173 GRSVHGFVMKSRLHDCVFVASSLADMYGKRGFLDDARKVFDEIPERNVVAWNAMMVGYVQ 232

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G ++EA+ +  +M  +G++     +   L A  ++  I  G++ H++ + +    D  +
Sbjct: 233 NGMNEEAIRLLSDMKEEGIEPTRVTVSMCLSASANIGGIEEGKQSHAVAIVNGLEMDNIL 292

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            +SL++ Y K G +E A+ VFD M+ KD+V  N ++SGYVQ+GL   A+++   +    +
Sbjct: 293 GTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVENAIDMCRLMRVENL 352

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
           K + VT +TL+S  +++ D  +  ++         E D+   ++ +          +A  
Sbjct: 353 KFDCVTLSTLMSVAARTRDLKLGKEVLCYCIRHSFESDIGLASTAVDMYAECGSVVDAKK 412

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F   + +     +A +++   +  S   +R   E+     +  V  ++  R+ ++    
Sbjct: 413 VFDATVQKDLILWNALLAAYTESGHSGEALRLFYEMQ----LQSVPPNVITRNLIMRSLL 468

Query: 397 KCGFISEARTLFDKMSER----NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
             G +SEA+ +F +M       N ++W +M+ G   +G  +EAI    +M E   + + +
Sbjct: 469 GNGQVSEAKEMFSQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMLESGARPNTV 528

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           S    L+AC ++  + LG  +   +    +          +VD+  + G + +A  +  +
Sbjct: 529 SIAIALSACANLASLHLGTSIHGYIIRNQQHSSSVLVDTSLVDMYAKCGDINKAERVFGS 588

Query: 512 -MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLT 559
            + +E +L ++GA++ A   +G ++ A    ++L E  +EP+      LL+
Sbjct: 589 KLYSEFELPLYGAMISAYALYGKLKEAVTLYRNLEEIGIEPDDKTITSLLS 639



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 206/449 (45%), Gaps = 38/449 (8%)

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS--F 210
           + ++ G   EA+ +  EM  + L+    +   +L+ C +  D+ TG++IH+ VLK+   +
Sbjct: 25  SLSKNGEINEALRLVTEMDFRNLRIGPEIFGEILQGCVYDRDLSTGKQIHARVLKNGEFY 84

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
             + ++ + L+  Y+KC  +E ++ +F  +  +++ +  A+V    + G + +AL    E
Sbjct: 85  SRNEYIETKLVVFYAKCDDLEISESLFSRLRIRNVFSWAAIVGVRSRIGFSEDALTGFVE 144

Query: 271 IGTPRVKPN------------VVTWNTL---ISGF---SKSGDQVMV-SKLFQLMRAKGV 311
           +    + P+            V+ W+     + GF   S+  D V V S L  +   +G 
Sbjct: 145 MLETEISPDNFVVPNVCKACGVLRWSRFGRSVHGFVMKSRLHDCVFVASSLADMYGKRGF 204

Query: 312 ------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
                       E +VV+W +++ G V N  N+EA     +M  +G  PT  T+S  L A
Sbjct: 205 LDDARKVFDEIPERNVVAWNAMMVGYVQNGMNEEAIRLLSDMKEEGIEPTRVTVSMCLSA 264

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTW 419
            A+   +  GK+ H  AIV G+E D  + ++L++ Y K G I  A  +FD+M  ++ VTW
Sbjct: 265 SANIGGIEEGKQSHAVAIVNGLEMDNILGTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTW 324

Query: 420 NSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           N +I G    G  + AI++   M  E  K D ++ + +++       ++LG+ +      
Sbjct: 325 NLLISGYVQQGLVENAIDMCRLMRVENLKFDCVTLSTLMSVAARTRDLKLGKEVLCYCI- 383

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC--KNHGNIEL 536
           ++         +  VD+    G + +A ++    + + DL +W ALL A     H    L
Sbjct: 384 RHSFESDIGLASTAVDMYAECGSVVDAKKVFDA-TVQKDLILWNALLAAYTESGHSGEAL 442

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANA 565
                  L  + P     N+++  L  N 
Sbjct: 443 RLFYEMQLQSVPPNVITRNLIMRSLLGNG 471



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 7/248 (2%)

Query: 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA 376
           S+   +S L  N   +EA     EM  +           IL  C    ++  GK+IH   
Sbjct: 18  SYFHRVSSLSKNGEINEALRLVTEMDFRNLRIGPEIFGEILQGCVYDRDLSTGKQIHARV 77

Query: 377 IVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE 434
           +  G     + ++ + LV  YAKC  +  + +LF ++  RN  +W +++   +  G+ ++
Sbjct: 78  LKNGEFYSRNEYIETKLVVFYAKCDDLEISESLFSRLRIRNVFSWAAIVGVRSRIGFSED 137

Query: 435 AIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           A+  F +M E +   D+     V  AC  +     G+ +   +  K ++       + + 
Sbjct: 138 ALTGFVEMLETEISPDNFVVPNVCKACGVLRWSRFGRSVHGFVM-KSRLHDCVFVASSLA 196

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHLSE-LEPES 551
           D+ G+ G L +A ++   +  E ++  W A++ G  +N  N E   + +    E +EP  
Sbjct: 197 DMYGKRGFLDDARKVFDEI-PERNVVAWNAMMVGYVQNGMNEEAIRLLSDMKEEGIEPTR 255

Query: 552 AANNMLLT 559
              +M L+
Sbjct: 256 VTVSMCLS 263


>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
          Length = 700

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 256/495 (51%), Gaps = 33/495 (6%)

Query: 105 IVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA 163
           I SG AR    +   L+  + +C  +  AR +F+ +   ++  W A+ G     G   E 
Sbjct: 180 IASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEV 239

Query: 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223
           V +F+ M  +G   +  +  +V+ ACG   ++  G  +H   +K     D +V ++L+DM
Sbjct: 240 VDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDM 299

Query: 224 YSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
           Y KCG VE A  +F     KD+V+ ++++ GY Q G+   +++L  E+ +  + PN  T 
Sbjct: 300 YCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTL 359

Query: 284 NTLISGFS-----KSGDQV--------------MVSKLFQLMRAKGV------------E 312
            +++   S     +SG ++              +VS L  L   +G+            +
Sbjct: 360 ASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLD 419

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            D+  W S+++G   N  +D AF   + +   G  P   T+ S+LP C     + +GKE+
Sbjct: 420 KDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKEL 479

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H   I   +     V +AL+DMY KCGF+  A+ +F  M+ERNTVT+N +I     H + 
Sbjct: 480 HAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHE 539

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           D+A+  F+ M+      D ++F A+L+ C H GL++ G  L++ M   Y I P  EHY+C
Sbjct: 540 DQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSC 599

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           +VDL  R G+L EA+  +  M+ EP++ V G LL AC+ H  +++AE+  K + E  P  
Sbjct: 600 IVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPND 659

Query: 552 AANNMLLTDLYANAG 566
              ++LL+++YA+AG
Sbjct: 660 PGYHILLSNIYADAG 674



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/521 (27%), Positives = 232/521 (44%), Gaps = 88/521 (16%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            Q  + LHA ++V G    T +  +L+  Y +  ++ HA  +FD +P+ N   W A+   
Sbjct: 64  FQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKG 123

Query: 154 YARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
               G   EA+ +F  M   G +  + F  P V+KAC  L  +  G K+  +V       
Sbjct: 124 LVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASG 183

Query: 213 DA----FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
           +A    FV  +L+DM++KCG +++A+ VF+ M  +D+ A  AM+ G V  G   E ++L 
Sbjct: 184 NARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLF 243

Query: 269 E---------------------------EIGTP----RVKP----NVVTWNTLISGFSKS 293
                                       ++GT      VK     ++   N L+  + K 
Sbjct: 244 NHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKC 303

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G   M   LF    +K    DVVSW+S+I G   N  ++ +   F EM+S G  P S+T+
Sbjct: 304 GCVEMADCLFWSTNSK----DVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTL 359

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +SILP  +    +R GKEIH  +I  G+E    V SAL+D+Y+K G I  A T+F    +
Sbjct: 360 ASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLD 419

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC------------ 460
           ++   WNSM+ G A +GY D A      +++   K DH++  +VL  C            
Sbjct: 420 KDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKEL 479

Query: 461 -----------------------CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
                                  C  G +E+ + +F +M E+      T  Y  ++   G
Sbjct: 480 HAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTER-----NTVTYNILISSFG 534

Query: 498 RAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           +     +A   ++++K     PD   + ALL  C + G I+
Sbjct: 535 KHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLID 575



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 192/411 (46%), Gaps = 58/411 (14%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L++C    D     ++H+ VL    G    +V+ L+  Y+K G V  A +VFD M  ++ 
Sbjct: 58  LQSC---PDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNS 114

Query: 246 VAMNAMVSGYVQRGLATEAL---------------------------------------N 266
            A NA++ G V  G  +EAL                                        
Sbjct: 115 FAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWE 174

Query: 267 LVE-EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
           +VE +I +   +PNV     L+  F+K G       +F+ M+ +    D+ +WT++I G 
Sbjct: 175 MVEADIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVR----DLAAWTAMIGGT 230

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           VH+    E  D F  M S+GF   S   ++++ AC  A  ++ G  +HGCA+  G  GD+
Sbjct: 231 VHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDI 290

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           +V +ALVDMY KCG +  A  LF   + ++ V+W+S+I G + +G  + ++ LF +M   
Sbjct: 291 YVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISL 350

Query: 446 KKLDHLSFTAVLTACCHV-GLVELGQRL--FNMMQEKYKIMPRTEH-YACMVDLLGRAGR 501
               + S  A +  C  V  L+  G+ +  F++       + R+E   + ++DL  + G 
Sbjct: 351 GINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHG----LERSEFVVSALIDLYSKQG- 405

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPE 550
           L    E I  ++ + DL +W +++     +G  + A  A + L +  L+P+
Sbjct: 406 LIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPD 456



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 184/430 (42%), Gaps = 47/430 (10%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   LQ G  LH   + SG +    ++  L+  Y +C  +  A  LF      ++  W +
Sbjct: 267 RAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSS 326

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   Y++ G H  +V++F EM   G+  N   + S+L     L  I +G++IH   ++H 
Sbjct: 327 LIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHG 386

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE---ALN 266
                FVVS+LID+YSK G +  A+ +F   ++KD+   N+MV+GY   G +     AL 
Sbjct: 387 LERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALR 446

Query: 267 LVEEIGTPRVKPNVVTW-----------------------------------NTLISGFS 291
           L++++G   +KP+ VT                                    N L+  + 
Sbjct: 447 LLQKVG---LKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYC 503

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           K G   +  ++FQLM     E + V++  +IS    +   D+A   F  M   G  P   
Sbjct: 504 KCGFLEVAKEVFQLM----TERNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKV 559

Query: 352 TISSILPACASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           T  ++L  C+ A  + +G  + H       +  +    S +VD+Y++CG + EA      
Sbjct: 560 TFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSN 619

Query: 411 MSERNTV-TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           M+E   +     ++  C  H   D A  +  ++ E+   D      +       G+    
Sbjct: 620 MAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPNDPGYHILLSNIYADAGMWSDV 679

Query: 470 QRLFNMMQEK 479
            R+  M+QE+
Sbjct: 680 TRIRTMIQER 689



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 149/330 (45%), Gaps = 15/330 (4%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + ++SGK +H   I  GL R   + + LI  Y++   I  A  +F      ++  W ++ 
Sbjct: 370 KLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMV 429

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA  GY   A      +   GLK +   + SVL  C     +  G+++H+ V+K+   
Sbjct: 430 AGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCIN 489

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +   V ++L+DMY KCG +E AK+VF  M E++ V  N ++S + +     +AL+  + +
Sbjct: 490 SVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLM 549

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL----MRAKGVEPDVVSWTSVISGLVH 327
               + P+ VT+  L+S  S +G   ++ K   L    +    + P+   ++ ++   ++
Sbjct: 550 KRDGIAPDKVTFVALLSCCSHAG---LIDKGLHLYHSMLHDYNISPEKEHYSCIVD--LY 604

Query: 328 NFCN--DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           + C   DEA+     M  +   P    +  +L AC    N     E+ G  I      D 
Sbjct: 605 SRCGKLDEAWCFMSNMAEE---PEIDVLGGLLAAC-RVHNRMDIAELVGKRIFEQNPNDP 660

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERN 415
                L ++YA  G  S+   +   + ERN
Sbjct: 661 GYHILLSNIYADAGMWSDVTRIRTMIQERN 690



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +S+L    S  + +  + +H   +V G      + + LV  YAK G ++ A  +FD M  
Sbjct: 52  ASLLLRLQSCPDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPR 111

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQR 471
           RN+  WN++I G  + G   EA+E+F  M  +    +D  ++  V+ AC  +G V  G++
Sbjct: 112 RNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRK 171

Query: 472 LFNMMQEKY---KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           ++ M++         P       +VD+  + G L EA  + ++M    DL  W A++G  
Sbjct: 172 VWEMVEADIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVR-DLAAWTAMIGGT 230

Query: 529 KNHGN 533
            + GN
Sbjct: 231 VHSGN 235


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 154/484 (31%), Positives = 253/484 (52%), Gaps = 13/484 (2%)

Query: 88  YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRW 147
           Y   RA + G+ +HA ++  G      +   LI  YT+C  +  A  +F+ +P   I  W
Sbjct: 260 YSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSW 319

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
             L   + + G   +AV V   M   G + N     ++L +C    D+ +   +   + +
Sbjct: 320 NILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISR 379

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL 267
            S  T   ++S          ++E  +++  + V+ D   +  ++S   + G+    L+ 
Sbjct: 380 PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGI----LDF 435

Query: 268 VEEIGTPRVK----PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323
             ++ +  V+     ++   + L+  +SK G   +   +F  M     E DVV W S+IS
Sbjct: 436 GRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM----TERDVVCWNSIIS 491

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG 383
           GL  +  N EAFD FK+M   G  PT ++ +S++ +C+  +++  G++IH   +  G + 
Sbjct: 492 GLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQ 551

Query: 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM- 442
           +++V SAL+DMYAKCG + +AR  FD M  +N V WN MI G A +G  D+A+ELF  M 
Sbjct: 552 NVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYML 611

Query: 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502
              +K D ++F AVLT C H GLV+     FN M+  Y I+P  EHY C++D LGRAGR 
Sbjct: 612 TTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRF 671

Query: 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562
            E   +I  M  + D  +W  LL AC  H N EL + AA+HL  ++P++ +  +LL+++Y
Sbjct: 672 VEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIY 731

Query: 563 ANAG 566
           A+ G
Sbjct: 732 ASLG 735



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 251/528 (47%), Gaps = 45/528 (8%)

Query: 40  LVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRA------ 93
           L  +C     DA + L+ G+          +  +   SP    E +E+Y R RA      
Sbjct: 81  LSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPT 140

Query: 94  ----------------LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
                           L  G+  H   +  GL     +   L+  YT+C ++  A  LF 
Sbjct: 141 HFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFY 200

Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LSDI 195
            + + N   + A+ G  A+ G   +A+ +F  M   G+  +   + SVL AC     +D 
Sbjct: 201 GMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDY 260

Query: 196 GT------GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
                   G+ IH+LV++  FG+D  V +SLIDMY+KC  +++A KVF+ +    IV+ N
Sbjct: 261 SVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWN 320

Query: 250 AMVSGYVQRG---LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
            +++G+ Q G    A E L+L++E G    +PN VT++ L++   K+ D      +F   
Sbjct: 321 ILITGFGQEGSCAKAVEVLSLMQEAG---FEPNEVTYSNLLASCIKARDVHSARAMFD-- 375

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
             K   P V +W +++SG      + +  + F+ M  Q   P   T++ IL +C+    +
Sbjct: 376 --KISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGIL 433

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
             G+++H  ++   +  D+ V S LVDMY+KCG I  AR++F+KM+ER+ V WNS+I G 
Sbjct: 434 DFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGL 493

Query: 427 ANHGYCDEAIELFNQMEERKKLD-HLSFTAVLTACCHVGLVELGQRLF-NMMQEKYKIMP 484
             H    EA + F QM E   +    S+ +++ +C  +  +  G+++   +M++ Y    
Sbjct: 494 TIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYD--Q 551

Query: 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
                + ++D+  + G + +A     TM  + ++  W  ++     +G
Sbjct: 552 NVYVGSALIDMYAKCGNMDDARLFFDTMMMK-NIVAWNEMIHGYAQNG 598



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 202/498 (40%), Gaps = 123/498 (24%)

Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA----------------LTGAYAR 156
           T +A +L+  Y+      HA + F  +P  N + + A                L G   R
Sbjct: 43  TFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPR 102

Query: 157 R----------------GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200
           R                G   EAV ++  M  +GL    F + SVL ACG L+ +G G +
Sbjct: 103 RNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRR 162

Query: 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260
            H + +K     + FV ++L+ MY+KCGSV  A ++F  M   + V+  AM+ G  Q G 
Sbjct: 163 CHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGS 222

Query: 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS-GDQVMVSKLFQL-------------- 305
             +AL L   +    V  + V+ ++++   +++      V++ F+L              
Sbjct: 223 IDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFG 282

Query: 306 -----------MRAKGVEPD-------------VVSWTSVISGLVHNFCNDEAFDTFKEM 341
                      M  K VE D             +VSW  +I+G        +A +    M
Sbjct: 283 SDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLM 342

Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
              GF P   T S++L +C  A      +++H                            
Sbjct: 343 QEAGFEPNEVTYSNLLASCIKA------RDVH---------------------------- 368

Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDE-----AIELFNQMEERK-KLDHLSFTA 455
             AR +FDK+S  +  TWN+++      GYC E      IELF +M+ +  + D  +   
Sbjct: 369 -SARAMFDKISRPSVTTWNTLL-----SGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAV 422

Query: 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMS 513
           +L++C  +G+++ G+++ +      + +   + +    +VD+  + G++  A  +   M 
Sbjct: 423 ILSSCSKLGILDFGRQVHS---ASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM- 478

Query: 514 TEPDLFVWGALLGACKNH 531
           TE D+  W +++     H
Sbjct: 479 TERDVVCWNSIISGLTIH 496



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 138/280 (49%), Gaps = 17/280 (6%)

Query: 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303
           D    N +V  Y + GL   AL     + +P    N  ++N  +S   ++GD      L 
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSP----NDYSYNAALSAACRAGDLDAARDLL 97

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCND-EAFDTFKEMLSQGFCPTSATISSILPACAS 362
             M  +    + VSW +VIS L  +  +  EA + +  M ++G  PT  T++S+L AC  
Sbjct: 98  GGMPRR----NAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGG 153

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
            A +  G+  HG A+ +G++ +  V +AL+ MY KCG + +A  LF  M+  N V++ +M
Sbjct: 154 LAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAM 213

Query: 423 IFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELG-QRLFNMMQEKY 480
           + G A  G  D+A+ LF +M      +D +S ++VL AC      +    R F + Q  +
Sbjct: 214 MGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIH 273

Query: 481 KIMPRT-----EHYA-CMVDLLGRAGRLAEAYEMIKTMST 514
            ++ R      +H    ++D+  +   + EA ++ +++ +
Sbjct: 274 ALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPS 313



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 79  AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE 138
           ++Y+  I    R  ++  G+ +HAQ++  G  +   + + LI  Y +C N+  AR+ FD 
Sbjct: 519 SSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDT 578

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
           +   NI  W  +   YA+ G   +AV +F  M     K +     +VL  C H   +   
Sbjct: 579 MMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 638

Query: 199 EKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
               +  +++S+G        + LID   + G   + + +  +M  KD
Sbjct: 639 MAFFN-SMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKD 685


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 250/468 (53%), Gaps = 49/468 (10%)

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206
           W ++   Y        + + F+ M    +  N  V PS+LKA   L        +H+  +
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 207 KHSFGTDAFVVSSLIDMYSKCGSVEKA---------------KKVFDEMVEKDIVAMNAM 251
           +    +D ++ ++LI+ Y+K  +  K                KKVFD M  +D+V+ N +
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 252 VSGYVQRGLATEALNLVEEIG-TPRVKPNVVTWNTLISGFSK------------------ 292
           ++G+ Q G+  EAL++V E+G   ++KP+  T ++++  F++                  
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNG 257

Query: 293 -SGDQVMVSKLFQL----------MRAKGVEP--DVVSWTSVISGLVHNFCNDEAFDTFK 339
             GD  + S L  +          +RA  + P  D +SW S+I+G V N   D     F+
Sbjct: 258 FDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFR 317

Query: 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399
            ML +   P + + SS++PACA    +  G+++HGC + +G + +  + S+LVDMYAKCG
Sbjct: 318 RMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCG 377

Query: 400 FISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLT 458
            I  AR +FD++ +R+ V W ++I GCA HG+  +A+ LF N +E+  +  +++F AVLT
Sbjct: 378 NIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLT 437

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM-STEPD 517
           AC H GLV+ G R FN M+  + I P  EHYA + DLLGRAGRL EAY+ I  M   +P 
Sbjct: 438 ACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPT 497

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
             VW  LL AC+ H ++ELAE     L  ++ E+    +L++++Y+ A
Sbjct: 498 GSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAA 545



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 150/307 (48%), Gaps = 5/307 (1%)

Query: 57  NGIFIEAHYKMPIISRSFHLSPAAY--SERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           NG+++EA   +  + ++  L P ++  S  + I+     +  GK +H   + +G      
Sbjct: 204 NGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVF 263

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I + LI  Y +C  +  +   F  +P+ +   W ++     + G     +  F  M  + 
Sbjct: 264 IGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKEN 323

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +K       SV+ AC HL+ +  G ++H  +++  F  + F+ SSL+DMY+KCG+++ A+
Sbjct: 324 VKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMAR 383

Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
            VFD + ++D+VA  A++ G    G A +A++L E +    V+P  V +  +++  S +G
Sbjct: 384 YVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAG 443

Query: 295 DQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
                 + F  M R  G+ P +  + +V   L      +EA+D    M  +G  PT +  
Sbjct: 444 LVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNM--RGVQPTGSVW 501

Query: 354 SSILPAC 360
           S +L AC
Sbjct: 502 SILLAAC 508


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 167/516 (32%), Positives = 269/516 (52%), Gaps = 49/516 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT-NIHRWIALT 151
           +L+ G  +H  ++ S L    +++  L+  Y +C ++ HA+ +F ++ +T N+  W  + 
Sbjct: 73  SLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMA 132

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           GA+A  G   EA+  F  M + G+K     + ++L AC   + +  G  IHS +    F 
Sbjct: 133 GAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFE 192

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--KDIVAMNAMVSGYVQRGLATEALNL-- 267
           ++  V ++++ MY +CG+VE+A+KVFD M E  +D+V+ N M+S YV      +A+ L  
Sbjct: 193 SELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQ 252

Query: 268 --------------------VEEIGTPRV----------KPNVVTWNTLISGFSKSGDQV 297
                                E++G  RV          + NV+  N L+S ++K G   
Sbjct: 253 RMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHT 312

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML-------SQGFCPTS 350
               +F  M  + +    +SWT++IS  V      EA   F++ML       SQ   P +
Sbjct: 313 EARAVFDKMEQRSI----ISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDA 368

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
               +IL ACA  + + +GK +   A   G+  D  V +A+V++Y KCG I EAR +FD 
Sbjct: 369 LAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDA 428

Query: 411 MSERNTVT-WNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVEL 468
           +  R  V  WN+MI   A  G   EA++LF +ME E  + D  SF ++L AC H GL + 
Sbjct: 429 VCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQ 488

Query: 469 GQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
           G+  F  M  +Y+ + RT +H+ C+ DLLGR GRL EA E ++ +  +PD   W +LL A
Sbjct: 489 GKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAA 548

Query: 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           C+NH +++ A+  A  L  LEP  A   + L+++YA
Sbjct: 549 CRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYA 584



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 208/459 (45%), Gaps = 56/459 (12%)

Query: 122 FYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181
            Y  C +   A+  FD + + N++ W  L  A+A  G  +E +     M   G++ +   
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241
             + L +CG    +  G +IH +V+      D  V ++L++MY KCGS+  AK+VF +M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 242 E-KDIVAMNAMVSGYVQRGLATEALN----------------------------LVEE-- 270
             +++++ + M   +   G   EAL                             LV++  
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 271 -----IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
                I     +  ++  N +++ + + G      K+F  M       DVVSW  ++S  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAM--DEALRDVVSWNIMLSTY 238

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           VHN    +A   ++ M  +   P   T  S+L AC+SA ++  G+ +H   +   +E ++
Sbjct: 239 VHNDRGKDAIQLYQRMQLR---PDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV 295

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE- 444
            V +ALV MYAKCG  +EAR +FDKM +R+ ++W ++I          EA  LF QM E 
Sbjct: 296 IVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 355

Query: 445 -------RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA---CMVD 494
                  R K D L+F  +L AC  V  +E G+    M+ E+      +   A    +V+
Sbjct: 356 EKNGSSQRVKPDALAFVTILNACADVSALEQGK----MVSEQAASCGLSSDKAVGTAVVN 411

Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           L G+ G + EA  +   + + PD+ +W A++      G 
Sbjct: 412 LYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQ 450



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLS 452
           MYA C    +A+  FD + +RN  +W  ++   A  G   E +    +M +   + D ++
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 453 FTAVLTACCHVGLVELGQRLFNM-MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           F   L +C     +  G R+  M +  + +I P+  +   ++++  + G L+ A  +   
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAK 118

Query: 512 MSTEPDLFVWGALLGACKNHGNI 534
           M    ++  W  + GA   HGN+
Sbjct: 119 MERTRNVISWSIMAGAHALHGNV 141


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 158/509 (31%), Positives = 261/509 (51%), Gaps = 73/509 (14%)

Query: 92  RALQSGKILHAQLIVSGLARL-TQIATKLITFYTECQN---------------------- 128
           ++L+ GK +H  L V+GL R  T +A  LI  Y++C +                      
Sbjct: 64  KSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGM 123

Query: 129 ---------IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179
                    I  AR LFD++P+ ++  W  +  AYA+ G+  +A+  + E+   G+  N 
Sbjct: 124 LSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNE 183

Query: 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
           +    +L  C  + ++   ++ H  VL   F ++  + SS++D Y+KC  +  A+++FDE
Sbjct: 184 YSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDE 243

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
           M+ +D++A                                   W T++SG+++ GD    
Sbjct: 244 MIIRDVLA-----------------------------------WTTMVSGYAQWGDVEAA 268

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359
            +LF LM     E + V+WTS+I+G   +    +A + F +M++    P   T SS L A
Sbjct: 269 RELFDLMP----EKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCA 324

Query: 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-NTVT 418
            AS A++  GK+IHG  I   +  +  V S+L+DMY+KCG +   R +FD M ++ + V 
Sbjct: 325 SASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVL 384

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN++I   A HG   EAI++F+ M     K D ++   +L AC H GLV+ G RL+  + 
Sbjct: 385 WNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESIT 444

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
             + ++P  EHYAC++DLLGRAG        ++ M  +P+  +W ALLG C+ HGNIE  
Sbjct: 445 SCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFG 504

Query: 538 EIAAKHLSELEPESAANNMLLTDLYANAG 566
              A+ + EL+P+S+A  +LL+ ++A  G
Sbjct: 505 REVAEKIIELDPQSSAAYVLLSSIHAAVG 533



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 151/327 (46%), Gaps = 38/327 (11%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE- 138
           +++  + I ++ + L+  K  H Q++V+G      I++ ++  Y +C  +  AR LFDE 
Sbjct: 185 SFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEM 244

Query: 139 ------------------------------IPKTNIHRWIALTGAYARRGYHQEAVTVFH 168
                                         +P+ N   W +L   YAR     +A+ +F 
Sbjct: 245 IIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFT 304

Query: 169 EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228
           +M    ++ + F   S L A   ++ +  G++IH  +++ +   +  VVSSLIDMYSKCG
Sbjct: 305 KMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCG 364

Query: 229 SVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI 287
            +E  + VFD M +K D+V  N ++S   Q G   EA+ + +++    +KP+ +T   L+
Sbjct: 365 CLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLL 424

Query: 288 SGFSKSGDQVMVSKLFQ-LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
           +  S SG      +L++ +    GV P+   +  +I  L         FDT    L +  
Sbjct: 425 NACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLL----GRAGHFDTLMNQLEKMP 480

Query: 347 C-PTSATISSILPACASAANMRRGKEI 372
           C P     +++L  C    N+  G+E+
Sbjct: 481 CKPNDEIWNALLGVCRMHGNIEFGREV 507



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 124/330 (37%), Gaps = 105/330 (31%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
           T +++ Y +  ++  AR LFD +P+ N   W +L   YAR     +A+ +F +M    ++
Sbjct: 253 TTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIR 312

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE----- 231
            + F   S L A   ++ +  G++IH  +++ +   +  VVSSLIDMYSKCG +E     
Sbjct: 313 PDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLV 372

Query: 232 ---------------------------KAKKVFDEMV----EKDIVAMNAMVSGYVQRGL 260
                                      +A ++FD+MV    + D + +  +++     GL
Sbjct: 373 FDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGL 432

Query: 261 ATEALNLVEEIGT-----PR----------------------------VKPNVVTWNTLI 287
             E L L E I +     P                              KPN   WN L+
Sbjct: 433 VQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALL 492

Query: 288 S-----GFSKSGDQV-----------------------------MVSKLFQLMRAKGVEP 313
                 G  + G +V                             +V  + QLM  + V  
Sbjct: 493 GVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRK 552

Query: 314 D-VVSWTSVISGLVHNFCNDEAFDTFKEML 342
           D  +SW   I   VH+F   +     KE++
Sbjct: 553 DRAISWIE-IENKVHSFTASDRLHPLKEVI 581


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 280/529 (52%), Gaps = 63/529 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH--RWIALTGAYARR 157
           +HA L   GLA     A  L+  Y +C + ++A  +FDE+P+ ++    W AL  AY+  
Sbjct: 74  VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSN 133

Query: 158 GYHQEAVTVFHEMH-IQGLKQ------NIFVIPSVLKAC--GHLSD-IGTGEKIHSLVLK 207
           G   EA   F  M  ++G         ++  + +++ AC  G  S+ +  G  +H LV+K
Sbjct: 134 GCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVK 193

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD--EMVEKDIVAMNAMVSGYVQRGLATEAL 265
           + FG    + +S++ MYS C  V  A +VF+   + ++D+V+ N+++SG+   G A  AL
Sbjct: 194 YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERAL 253

Query: 266 NLVEEI---GTPRVKPNVVTWNTLISGFSKSG-----------------------DQVMV 299
              E++   GT  V+PN VT   L+   ++ G                       D V++
Sbjct: 254 RTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVL 313

Query: 300 SKLFQLMRAK------------GVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG- 345
           + L   M A+            GVE  +VV W+++I+G     C +EA   F++ML +G 
Sbjct: 314 TALLD-MHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGN 372

Query: 346 -----FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
                  P + T+ S++ AC+     R    IH  A+  G++ D  + SAL+DM AKCG 
Sbjct: 373 MVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGD 432

Query: 401 ISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVL 457
           I   R +F +M E  R  V+W+SMI     HG    A+ELF++M     + + +++ +VL
Sbjct: 433 IEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVL 492

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           +AC H GLVE G+  FN M++ Y + P  +HYAC+VDLLGRAG L EA+ +I  M  + D
Sbjct: 493 SACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKAD 552

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L +WG+LL AC  HGN +L EI  K +  L+  S  +++LL ++Y +AG
Sbjct: 553 LALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAG 601



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 192/436 (44%), Gaps = 69/436 (15%)

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
           Q A+T F  M    +  N F  P++LKAC  L  +    ++H+ + +     D F  ++L
Sbjct: 34  QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAAL 93

Query: 221 IDMYSKCGSVEKAKKVFDEMVEK--DIVAMNAMVSGYVQRGLATEALNLVEEI------- 271
           +D Y KCG    A +VFDEM E   D+V+  A++S Y   G   EA      +       
Sbjct: 94  VDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWD 153

Query: 272 GTPRVKPNVVTWNTLIS------------------------GFSKS---GDQVM------ 298
           G+     +VV+   L+S                        GF  S   G+ ++      
Sbjct: 154 GSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSAC 213

Query: 299 --VSKLFQLMRAKGVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC---PTSAT 352
             V   +++     +E  DVVSW S+ISG   N   + A  TF++M+S+G     P   T
Sbjct: 214 KDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVT 273

Query: 353 ISSILPACASAANMRRGKEIH----GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           + ++L +CA    +     +H         + V  D+ V +AL+DM+A+CG ++ AR +F
Sbjct: 274 VIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIF 333

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-------KLDHLSFTAVLTACC 461
           D +  +N V W++MI G       +EA+ LF QM           K + ++  +V+ AC 
Sbjct: 334 DGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACS 393

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYA----CMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            +G      R  +M+  KY +    +  A     ++D+  + G +    ++   M     
Sbjct: 394 RLG----ASRSASMIH-KYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTR 448

Query: 518 LFV-WGALLGACKNHG 532
             V W +++GA   HG
Sbjct: 449 TVVSWSSMIGAEGIHG 464



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 178/393 (45%), Gaps = 58/393 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KTNIHRWIALT 151
           L+ G  +H  ++  G    T +   ++  Y+ C+++  A  +F+ IP  + ++  W +L 
Sbjct: 181 LRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLI 240

Query: 152 GAYARRGYHQEAVTVFHEMHIQG---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-K 207
             +   G  + A+  F +M  +G   ++ N   + ++LK+C  L  + T   +H  +  +
Sbjct: 241 SGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSR 300

Query: 208 HS---FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           HS      D  V+++L+DM+++CG++  A+++FD +  K++V  +AM++GY Q     EA
Sbjct: 301 HSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEA 360

Query: 265 LNLVEE-------IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--- 314
           L L  +       +G   VKPN VT  ++I+  S+ G     S + +   A G++ D   
Sbjct: 361 LRLFRQMLMEGNMVGV-EVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARI 419

Query: 315 ------------------------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
                                         VVSW+S+I     +     A + F EM + 
Sbjct: 420 ASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTG 479

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVM----GVEGDLHVRSALVDMYAKCGF 400
           G+ P   T  S+L AC+ A  + +GK    C   M    G+       + LVD+  + G 
Sbjct: 480 GYEPNEITYISVLSACSHAGLVEQGKS---CFNSMEKDYGMSPTGKHYACLVDLLGRAGH 536

Query: 401 ISEARTLFDKMS-ERNTVTWNSMIFGCANHGYC 432
           + EA  +   M  + +   W S++  C  HG C
Sbjct: 537 LDEAHNVILNMPIKADLALWGSLLAACHLHGNC 569



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 23/272 (8%)

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVIS-GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           M+ K  +         D   W S+I+     N     A   F  M +      + T  ++
Sbjct: 1   MIGKTRRWYHCSISHKDTFHWNSLIAKNATQN--PQTALTFFTRMQAHAVPSNNFTFPAL 58

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-- 414
           L ACA+   +    ++H     +G+  D    +ALVD Y KCG    A  +FD+M E   
Sbjct: 59  LKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSV 118

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQME--------ERKKLDHLSFTAVLTAC---CHV 463
           + V+W ++I   +++G  DEA + F +M         E   +D +S  A+++AC   C  
Sbjct: 119 DVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS 178

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP-DLFVWG 522
             +  G  +  ++  KY     T     MV +      +  A+ +   +  E  D+  W 
Sbjct: 179 NCLRRGSAVHGLVV-KYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWN 237

Query: 523 ALLGACKNHGNIELA-----EIAAKHLSELEP 549
           +L+     +G  E A     ++ ++  S +EP
Sbjct: 238 SLISGFTLNGEAERALRTFEDMVSEGTSAVEP 269



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT--NIHRWIAL 150
           A +S  ++H   + +GL +  +IA+ LI    +C +I H R +F E+ ++   +  W ++
Sbjct: 397 ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSM 456

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHS 209
            GA    G  + A+ +F EM   G + N     SVL AC H   +  G+   +S+   + 
Sbjct: 457 IGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYG 516

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
                   + L+D+  + G +++A  V   M  K  +A+
Sbjct: 517 MSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLAL 555


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 171/544 (31%), Positives = 276/544 (50%), Gaps = 80/544 (14%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLI-----TFYTECQNIHHARMLFDEIPKTNIHRW 147
           +++  K +HA +++ GL+ L  I  + I      +        H+ +   + P +    W
Sbjct: 16  SVKQAKQVHALILIHGLSHLEPILARQILLSASNYSATVAQYVHSVLHHSKSPDS--FSW 73

Query: 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207
                   + G  +EA  ++ +M   GL    F + S LKAC  ++    G  IH  V K
Sbjct: 74  ACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQK 133

Query: 208 HSF---GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
             F   G   +V ++L+D Y K G +E A+K+FDEM E+++V+ N+M++GY++ G    A
Sbjct: 134 FGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVA 193

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV------------- 311
             + +EI     + +V++WN++ISG++++GD      LFQ M  +               
Sbjct: 194 QRVFDEI----PQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEF 249

Query: 312 --------------EPDVVSWTSVISGLVHNFCND------------------------- 332
                         + + VSW ++ISG  ++ C D                         
Sbjct: 250 GDIDSARSFFDAMPQRNNVSWMTMISG--YSKCGDVDSACELFDQVGGKDLLLFNAMIAC 307

Query: 333 --------EAFDTFKEMLSQ--GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE 382
                   EA   F  ML+      P   T++S++ AC+   ++R G  I      +G+E
Sbjct: 308 YAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIE 367

Query: 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM 442
            D H+ +AL+D+YAKCG I +A  LF  + +++ V + +MI GC  +G   +AI+LF++M
Sbjct: 368 MDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEM 427

Query: 443 EERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501
            + +   + ++F  +LTA  H GLVE G   F  M+ KY ++P  +HY  MVDL GRAGR
Sbjct: 428 VDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMK-KYNLVPSVDHYGIMVDLFGRAGR 486

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561
           L EA E+IK+M  +P   VWGALL AC+ H N+E  EIAA+H  ELEP++     LL+++
Sbjct: 487 LQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNI 546

Query: 562 YANA 565
           YA+ 
Sbjct: 547 YASG 550


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 277/505 (54%), Gaps = 39/505 (7%)

Query: 74  FHLSPAAYSERIEI-YIRD-RALQSGKILHAQLIVSGLARLTQIATKLITF--YTECQNI 129
           F  + A+Y  R+++  I+  ++++  K +HA L+ +G      IAT+++     ++ ++I
Sbjct: 6   FQPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDI 65

Query: 130 HHARMLFDEIPKTNIHRWIALTGAYAR-RGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLK 187
            +A  +FD++P+ N   W  +  A A  +  H +A+ VF +M  +  ++ N F  PSVLK
Sbjct: 66  GYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLK 125

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC  ++ +  G+++H L+LK     D FVV++L+ MY  CGS+E A  +F   VE     
Sbjct: 126 ACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEG---- 181

Query: 248 MNAMVSGYVQRGLATEALNLV-EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
                          +  NLV +E G    + NVV  N ++ G+++ G+     +LF  M
Sbjct: 182 -------------VDDVRNLVRDERGR---EFNVVLCNVMVDGYARVGNLKAARELFDRM 225

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPACASAAN 365
             + V    VSW  +ISG   N    EA + F  M+  G   P   T+ S+LPA +    
Sbjct: 226 AQRSV----VSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGV 281

Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
           +  GK +H  A    +  D  + SALVDMYAKCG I +A  +F+++ + N +TWN++I G
Sbjct: 282 LELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGG 341

Query: 426 CANHGYCDEAIELFNQMEERKKL----DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
            A HG   +A ++FN +   +K       +++ A+L+AC H GLV+ G+  FN M     
Sbjct: 342 LAMHG---KANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVG 398

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           + P+ EHY CMVDLLGRAG L EA E+I  M  +PD  +W ALLGA K H NI++   AA
Sbjct: 399 LKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAA 458

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
           + L ++ P  +   + L+++YA++G
Sbjct: 459 EVLMQMAPHDSGAYVALSNMYASSG 483


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 155/496 (31%), Positives = 256/496 (51%), Gaps = 61/496 (12%)

Query: 131 HARMLFDEIPKTNIHR-----WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
           H + L  +I KT         WI +   YA  G  + ++  F+ +   G+  +  + PS+
Sbjct: 23  HVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSL 82

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK------------------- 226
           L+A          + +H+ V++  F  D +  ++L++MYSK                   
Sbjct: 83  LRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHN 142

Query: 227 ---CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
                 ++  +K+FD M  +D+V+ N +++G  Q G+  EALN+V+E+G   ++P+  T 
Sbjct: 143 NKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTL 202

Query: 284 NTLISGFSKSGD------------------QVMVSKLFQLMRAKGVE------------- 312
           ++++  F++  +                   V +      M AK  +             
Sbjct: 203 SSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSN 262

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            D +SW S+I+G V N   D+    F+ ML +   P   + SS++PACA    +  GK++
Sbjct: 263 RDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQL 322

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK--MSERNTVTWNSMIFGCANHG 430
           H   I +G + +  + S+L+DMYAKCG I  AR +F+K  M +R+ V+W ++I GCA HG
Sbjct: 323 HAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHG 382

Query: 431 YCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489
           +  +A+ LF +M  +  K  +++F AVLTAC H GLV+ G + FN MQ  + + P  EHY
Sbjct: 383 HALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHY 442

Query: 490 ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549
           A + DLLGRAGRL EAY+ I  M  EP   VW  LL AC+ H NIELAE     +  ++P
Sbjct: 443 AAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDP 502

Query: 550 ESAANNMLLTDLYANA 565
            +   +++++++Y+ A
Sbjct: 503 GNMGAHVIMSNIYSAA 518



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 39/351 (11%)

Query: 129 IHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188
           I   R LFD +P  ++  W  +    A+ G ++EA+ +  EM  + L+ + F + S+L  
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPI 208

Query: 189 CGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
               +++  G++IH   ++H F  D F+ SSLIDMY+KC  VE +   F  +  +D ++ 
Sbjct: 209 FTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISW 268

Query: 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG------------------- 289
           N++++G VQ G   + L     +   +VKP  V+++++I                     
Sbjct: 269 NSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIR 328

Query: 290 ----------------FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
                           ++K G+  M   +F   + +  + D+VSWT++I G   +    +
Sbjct: 329 LGFDDNKFIASSLLDMYAKCGNIKMARYIFN--KIEMCDRDMVSWTAIIMGCAMHGHALD 386

Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRG-KEIHGCAIVMGVEGDLHVRSALV 392
           A   F+EML  G  P      ++L AC+ A  +  G K  +      GV   L   +A+ 
Sbjct: 387 AVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVA 446

Query: 393 DMYAKCGFISEARTLFDKMSERNTVT-WNSMIFGCANHGYCDEAIELFNQM 442
           D+  + G + EA      M E  T + W++++  C  H   + A ++ N++
Sbjct: 447 DLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKI 497



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 192/409 (46%), Gaps = 26/409 (6%)

Query: 57  NGIFIEAHYKMPIISRSFHLSPAAY--SERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           NG++ EA   +  + +  +L P ++  S  + I+     +  GK +H   I  G  +   
Sbjct: 177 NGMYEEALNMVKEMGKE-NLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVF 235

Query: 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
           I + LI  Y +C  +  +   F  +   +   W ++     + G   + +  F  M  + 
Sbjct: 236 IGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEK 295

Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
           +K       SV+ AC HL+ +  G+++H+ +++  F  + F+ SSL+DMY+KCG+++ A+
Sbjct: 296 VKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMAR 355

Query: 235 KVFD--EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
            +F+  EM ++D+V+  A++ G    G A +A++L EE+    VKP  V +  +++  S 
Sbjct: 356 YIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSH 415

Query: 293 SGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           +G      K F  M R  GV P +  + +V   L      +EA+D    M   G  PT +
Sbjct: 416 AGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNM---GEEPTGS 472

Query: 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411
             S++L AC +  N+   +++    I++   G++     + ++Y+      +A  L  +M
Sbjct: 473 VWSTLLAACRAHKNIELAEKVVN-KILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRM 531

Query: 412 SERN-----TVTW-------NSMIFGCANHGYCDEAIELFN----QMEE 444
            +         +W       ++ + G  +H Y D+  E  N    QME+
Sbjct: 532 RKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEK 580


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 280/529 (52%), Gaps = 63/529 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH--RWIALTGAYARR 157
           +HA L   GLA     A  L+  Y +C + ++A  +FDE+P+ ++    W AL  AY+  
Sbjct: 74  VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSN 133

Query: 158 GYHQEAVTVFHEMH-IQGLKQ------NIFVIPSVLKAC--GHLSD-IGTGEKIHSLVLK 207
           G   EA   F  M  ++G         ++  + +++ AC  G  S+ +  G  +H LV+K
Sbjct: 134 GCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVK 193

Query: 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD--EMVEKDIVAMNAMVSGYVQRGLATEAL 265
           + FG    + +S++ MYS C  V  A +VF+   + ++D+V+ N+++SG+   G A  AL
Sbjct: 194 YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERAL 253

Query: 266 NLVEEI---GTPRVKPNVVTWNTLISGFSKSG-----------------------DQVMV 299
              E++   GT  V+PN VT   L+   ++ G                       D V++
Sbjct: 254 RTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVL 313

Query: 300 SKLFQLMRAK------------GVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG- 345
           + L   M A+            GVE  +VV W+++I+G     C +EA   F++ML +G 
Sbjct: 314 TALLD-MHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGN 372

Query: 346 -----FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
                  P + T+ S++ AC+     R    IH  A+  G++ D  + SAL+DM AKCG 
Sbjct: 373 MVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGD 432

Query: 401 ISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVL 457
           I   R +F +M E  R  V+W+SMI     HG    A+ELF++M     + + +++ +VL
Sbjct: 433 IEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVL 492

Query: 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517
           +AC H GLVE G+  FN M++ Y + P  +HYAC+VDLLGRAG L EA+ +I  M  + D
Sbjct: 493 SACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKAD 552

Query: 518 LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L +WG+LL AC  HGN +L EI  K +  L+  S  +++LL ++Y +AG
Sbjct: 553 LALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAG 601



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 192/436 (44%), Gaps = 69/436 (15%)

Query: 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220
           Q A+T F  M    +  N F  P++LKAC  L  +    ++H+ + +     D F  ++L
Sbjct: 34  QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAAL 93

Query: 221 IDMYSKCGSVEKAKKVFDEMVEK--DIVAMNAMVSGYVQRGLATEALNLVEEI------- 271
           +D Y KCG    A +VFDEM E   D+V+  A++S Y   G   EA      +       
Sbjct: 94  VDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWD 153

Query: 272 GTPRVKPNVVTWNTLIS------------------------GFSKS---GDQVM------ 298
           G+     +VV+   L+S                        GF  S   G+ ++      
Sbjct: 154 GSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSAC 213

Query: 299 --VSKLFQLMRAKGVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC---PTSAT 352
             V   +++     +E  DVVSW S+ISG   N   + A  TF++M+S+G     P   T
Sbjct: 214 KDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVT 273

Query: 353 ISSILPACASAANMRRGKEIH----GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408
           + ++L +CA    +     +H         + V  D+ V +AL+DM+A+CG ++ AR +F
Sbjct: 274 VIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIF 333

Query: 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-------KLDHLSFTAVLTACC 461
           D +  +N V W++MI G       +EA+ LF QM           K + ++  +V+ AC 
Sbjct: 334 DGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACS 393

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYA----CMVDLLGRAGRLAEAYEMIKTMSTEPD 517
            +G      R  +M+  KY +    +  A     ++D+  + G +    ++   M     
Sbjct: 394 RLG----ASRSASMIH-KYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTR 448

Query: 518 LFV-WGALLGACKNHG 532
             V W +++GA   HG
Sbjct: 449 TVVSWSSMIGAEGIHG 464



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 178/393 (45%), Gaps = 58/393 (14%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KTNIHRWIALT 151
           L+ G  +H  ++  G    T +   ++  Y+ C+++  A  +F+ IP  + ++  W +L 
Sbjct: 181 LRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLI 240

Query: 152 GAYARRGYHQEAVTVFHEMHIQG---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL-K 207
             +   G  + A+  F +M  +G   ++ N   + ++LK+C  L  + T   +H  +  +
Sbjct: 241 SGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSR 300

Query: 208 HS---FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           HS      D  V+++L+DM+++CG++  A+++FD +  K++V  +AM++GY Q     EA
Sbjct: 301 HSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEA 360

Query: 265 LNLVEE-------IGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--- 314
           L L  +       +G   VKPN VT  ++I+  S+ G     S + +   A G++ D   
Sbjct: 361 LRLFRQMLMEGNMVGV-EVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARI 419

Query: 315 ------------------------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
                                         VVSW+S+I     +     A + F EM + 
Sbjct: 420 ASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTG 479

Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVM----GVEGDLHVRSALVDMYAKCGF 400
           G+ P   T  S+L AC+ A  + +GK    C   M    G+       + LVD+  + G 
Sbjct: 480 GYEPNEITYISVLSACSHAGLVEQGKS---CFNSMEKDYGMSPTGKHYACLVDLLGRAGH 536

Query: 401 ISEARTLFDKMS-ERNTVTWNSMIFGCANHGYC 432
           + EA  +   M  + +   W S++  C  HG C
Sbjct: 537 LDEAHNVILNMPIKADLALWGSLLAACHLHGNC 569



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT--NIHRWIAL 150
           A +S  ++H   + +GL +  +IA+ LI    +C +I H R +F E+ ++   +  W ++
Sbjct: 397 ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSM 456

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK-IHSLVLKHS 209
            GA    G  + A+ +F EM   G + N     SVL AC H   +  G+   +S+   + 
Sbjct: 457 IGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYG 516

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAM 248
                   + L+D+  + G +++A  V   M  K  +A+
Sbjct: 517 MSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLAL 555



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 23/272 (8%)

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVIS-GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
           M+ K  +         D   W S+I+     N     A   F  M +      + T  ++
Sbjct: 1   MIGKTRRWYXCSISHKDTFHWNSLIAKNATQN--PQTALTFFTRMQAHAVPSNNFTFPAL 58

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-- 414
           L ACA+   +    ++H     +G+  D    +ALVD Y KCG    A  +FD+M E   
Sbjct: 59  LKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSV 118

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQME--------ERKKLDHLSFTAVLTAC---CHV 463
           + V+W ++I   +++G  DEA   F +M         E   +D +S  A+++AC   C  
Sbjct: 119 DVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS 178

Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP-DLFVWG 522
             +  G  +  ++  KY     T     MV +      +  A+ +   +  E  D+  W 
Sbjct: 179 NCLRRGSAVHGLVV-KYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWN 237

Query: 523 ALLGACKNHGNIELA-----EIAAKHLSELEP 549
           +L+     +G  E A     ++ ++  S +EP
Sbjct: 238 SLISGFXLNGEAERALRTFEDMVSEGTSAVEP 269


>gi|302791537|ref|XP_002977535.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
 gi|300154905|gb|EFJ21539.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
          Length = 545

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 265/483 (54%), Gaps = 14/483 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +G  +H+++  +GL     I+  L+  Y +C  +  A  +F  +P+ +   W  +   
Sbjct: 26  LAAGVGIHSRITEAGLQGDIVISNALVNMYGKCGALESACEIFHGVPRNDAISWNGMISL 85

Query: 154 YARRGY-HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           YA+ G+  +EA+ +F  MH +GL  N     ++L A      +  G KIH+ V++  +  
Sbjct: 86  YAQDGHSREEALELFRRMHGEGLTPNKVTFLAILSAVSGARGLEEGRKIHTQVVESGYSG 145

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNLVE 269
           +  V ++LIDMYSKCGS+E A+K F  M EK   D+V   AM++ Y   G   EA  L +
Sbjct: 146 ELSVGNALIDMYSKCGSLEDARKTFAGMDEKNKPDLVLWTAMIAAYAGHGDYKEAFELFQ 205

Query: 270 EIGTPRVKPN---VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           ++    +KP+   V   N ++  + K G+     K+F  M+    E D VSWT++I+   
Sbjct: 206 QMQDQGLKPDKSLVSIGNAIVHMYGKCGNVADARKMFDKMK----ERDTVSWTTMIAVYA 261

Query: 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDL 385
            +  + EA   FK ML +   P   T+ ++L AC++ + + +G+ ++   +  G  E DL
Sbjct: 262 EHGYDREALQIFKVMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDL 321

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EE 444
            + +A+  M+  CG + EAR +F+ ++ R+ V+WN +I   A HG  +E++ LF +M EE
Sbjct: 322 VLGNAVARMFGSCGSLREAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLFRRMLEE 381

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504
             K D ++F  VL+AC H GLV  G + F  M + Y+I     HY CMVDLLGRAGRLAE
Sbjct: 382 CVKPDEVTFVGVLSACSHGGLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGRAGRLAE 441

Query: 505 AYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
           A E++  +     +  +W +LL +CK H +++  + AAK L  + P   ++ + L  ++A
Sbjct: 442 AEELLSRLPCAATNDVMWTSLLSSCKLHSDLDRGKRAAKKLLAMVPGDPSHLLALATIHA 501

Query: 564 NAG 566
            +G
Sbjct: 502 ASG 504



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 178/403 (44%), Gaps = 71/403 (17%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M +QG+  +   + + L AC   S +  G  IHS + +     D  + ++L++MY KCG+
Sbjct: 1   MQLQGVAPDRVALIAALGACQDPSRLAAGVGIHSRITEAGLQGDIVISNALVNMYGKCGA 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA-TEALNLVEEIGTPRVKPNVVTW----- 283
           +E A ++F  +   D ++ N M+S Y Q G +  EAL L   +    + PN VT+     
Sbjct: 61  LESACEIFHGVPRNDAISWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVTFLAILS 120

Query: 284 ------------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
                                         N LI  +SK G      K F  M  K  +P
Sbjct: 121 AVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGMDEKN-KP 179

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
           D+V WT++I+    +    EAF+ F++M  QG  P  + +S                   
Sbjct: 180 DLVLWTAMIAAYAGHGDYKEAFELFQQMQDQGLKPDKSLVS------------------- 220

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
                        + +A+V MY KCG +++AR +FDKM ER+TV+W +MI   A HGY  
Sbjct: 221 -------------IGNAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVYAEHGYDR 267

Query: 434 EAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM 492
           EA+++F  M  E    D ++   VL AC +V  +  G+ ++    E             +
Sbjct: 268 EALQIFKVMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDLVLGNAV 327

Query: 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
             + G  G L EA E+ ++++   D+  W  L+ A   HG+ E
Sbjct: 328 ARMFGSCGSLREAREIFESLAAR-DVVSWNCLITAYAQHGSFE 369



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 172/385 (44%), Gaps = 80/385 (20%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF---DEIPKTNIHRWI 148
           R L+ G+ +H Q++ SG +    +   LI  Y++C ++  AR  F   DE  K ++  W 
Sbjct: 126 RGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGMDEKNKPDLVLWT 185

Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
           A+  AYA  G ++EA  +F +M  QGLK +                        SLV   
Sbjct: 186 AMIAAYAGHGDYKEAFELFQQMQDQGLKPD-----------------------KSLV--- 219

Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
           S G      ++++ MY KCG+V  A+K+FD+M E+D V+   M++ Y + G   EAL + 
Sbjct: 220 SIG------NAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVYAEHGYDREALQIF 273

Query: 269 EEIGTPRVKPNVVTW-NTL-----ISG----------FSKSG----DQVM---VSKLF-- 303
           + +    V P+ VT  N L     +SG          F +SG    D V+   V+++F  
Sbjct: 274 KVMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDLVLGNAVARMFGS 333

Query: 304 --QLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
              L  A+ +       DVVSW  +I+    +   +E+   F+ ML +   P   T   +
Sbjct: 334 CGSLREAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLFRRMLEECVKPDEVTFVGV 393

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRS------ALVDMYAKCGFISEARTLFDK 410
           L AC+       G    GC   + +  D  + +       +VD+  + G ++EA  L  +
Sbjct: 394 LSACSHG-----GLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGRAGRLAEAEELLSR 448

Query: 411 M--SERNTVTWNSMIFGCANHGYCD 433
           +  +  N V W S++  C  H   D
Sbjct: 449 LPCAATNDVMWTSLLSSCKLHSDLD 473



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 5/201 (2%)

Query: 341 MLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400
           M  QG  P    + + L AC   + +  G  IH      G++GD+ + +ALV+MY KCG 
Sbjct: 1   MQLQGVAPDRVALIAALGACQDPSRLAAGVGIHSRITEAGLQGDIVISNALVNMYGKCGA 60

Query: 401 ISEARTLFDKMSERNTVTWNSMIFGCANHGYC-DEAIELFNQME-ERKKLDHLSFTAVLT 458
           +  A  +F  +   + ++WN MI   A  G+  +EA+ELF +M  E    + ++F A+L+
Sbjct: 61  LESACEIFHGVPRNDAISWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVTFLAILS 120

Query: 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEP 516
           A      +E G+++   + E       +   A ++D+  + G L +A +    M    +P
Sbjct: 121 AVSGARGLEEGRKIHTQVVESGYSGELSVGNA-LIDMYSKCGSLEDARKTFAGMDEKNKP 179

Query: 517 DLFVWGALLGACKNHGNIELA 537
           DL +W A++ A   HG+ + A
Sbjct: 180 DLVLWTAMIAAYAGHGDYKEA 200


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 168/516 (32%), Positives = 257/516 (49%), Gaps = 50/516 (9%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTE--------CQNIHHARMLFDEIPK 141
           R   L+S K +HAQL+ S L     + TK   F+ +        C  +      F   P 
Sbjct: 93  RCNDLRSFKQIHAQLLRSTLVDNDLVVTKAANFFGKHVTDIRYPCNFLKQFDWSFSSFPC 152

Query: 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKI 201
             I         Y    +   A+ ++  +   G   +++ +P+VLK+C   S I   ++I
Sbjct: 153 NLI------ISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQI 206

Query: 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLA 261
           H+L +K     D FV +S + +YS CG    A KVFD M  +D+V+   ++SGY++ GL 
Sbjct: 207 HTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLF 266

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSK------------------SGDQVMVSKLF 303
            +A+ L   +    V PN  T+ +++    K                   G +++VS   
Sbjct: 267 NDAVALFLRM---DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTL 323

Query: 304 QLMRAKG-------------VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
             M  K               E D+VSWTS+ISGLV   C  E+ D F EML  GF P  
Sbjct: 324 MDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDG 383

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
             ++S+L ACAS   +  G+ +H       ++ D+H+ ++L+DMYAKCG I  A+ +F+ 
Sbjct: 384 VILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNL 443

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELG 469
           +  +N  TWN+ I G A +G+  EA++ F  + E   + + ++F AV +ACCH GLV+ G
Sbjct: 444 LPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEG 503

Query: 470 QRLFNMM-QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           +  F  M    Y + P  EHY CMVDLL RA  + EA E+I  M   PD+ + GALL A 
Sbjct: 504 RSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSAS 563

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564
             +GN+EL     K +   E + +   +LL++ YAN
Sbjct: 564 STYGNVELTPEMLKTVRNFECQESGVYVLLSNWYAN 599


>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
          Length = 679

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 270/475 (56%), Gaps = 10/475 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           L+ G++  A  +  G+A    I+ + ++    +   +  AR LF+ +P+ N+  W ++  
Sbjct: 178 LRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMIR 237

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y + G +++ + +F +M  +G++ N+  +  VL  C   S +  G ++H L+++  F  
Sbjct: 238 GYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAE 297

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F+  SLI MYS+ GS+  A+ +F  M +KDIV+ N++++GYVQ  +  +A  L + + 
Sbjct: 298 DIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQNDMIEDAHVLFKLMP 357

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + + ++W +++ GF+  G      +LF+ M  K    D ++W +V+S LV N    
Sbjct: 358 ----EKDAISWTSMVVGFANRGWMRESVELFEQMPVK----DEIAWAAVMSSLVANGNYV 409

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            A   F +M  +G  P +   S +L A AS A + +G + H  A+ MG   D  V ++LV
Sbjct: 410 SAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDSAVHASLV 469

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
            MYAKCG ++EA  +F  +S  + +  NSMI   A HG  ++A +LFN+M+ + ++ +H+
Sbjct: 470 TMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAFKLFNRMQYDGQRPNHV 529

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  +LTAC   GLV+ G   F  M+  Y I P  +HY CMVDLLGRAG L EA EM  +
Sbjct: 530 TFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGRAGFLNEALEMTNS 589

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  +     W ALL +   H N++LA++AA+ L E++P  A    +L++++++AG
Sbjct: 590 MPQKDYPDAWKALLSSSSLHSNLDLAKLAAQRLLEIDPYDATAYTVLSNMFSSAG 644



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 220/505 (43%), Gaps = 92/505 (18%)

Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
           L+T Y     I  A+ LFD +P  ++  W AL  AYA  G    A  VF +M ++     
Sbjct: 47  LLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAASW 106

Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
             ++   L+A       G     H+L  K     +A    ++I   ++ G + +A+ V+ 
Sbjct: 107 NALVSLYLRA-------GRPAAAHALFCKAP-AKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 239 EMVE--KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           EM    +D V  NAM+ GY++ G    AL + + +       +V++W+ ++ G  K G  
Sbjct: 159 EMPPRWRDPVGSNAMIWGYLRGGELGMALRVFDGMAA----RDVISWSAMVDGLCKYGTV 214

Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI 356
               +LF+ M     E +VVSWTS+I G V +    +    F +M  +G      T+S +
Sbjct: 215 SEARRLFEAM----PERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVV 270

Query: 357 LPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416
           L  CA A+ +  G ++H   I MG   D+ +  +L+ MY++ G +++AR+LF  M++++ 
Sbjct: 271 LDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDI 330

Query: 417 VTWN-------------------------------SMIFGCANHGYCDEAIELFNQMEER 445
           V+WN                               SM+ G AN G+  E++ELF QM  +
Sbjct: 331 VSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVK 390

Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC-------------- 491
              D +++ AV+++    G      R F  M ++    P T  ++C              
Sbjct: 391 ---DEIAWAAVMSSLVANGNYVSAVRWFCQMSQE-GCRPNTVAFSCLLSALASLAMLNQG 446

Query: 492 ---------------------MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
                                +V +  + GRLAEA+ +   +S  P L    +++ A   
Sbjct: 447 LQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCIS-HPSLIATNSMITAFAQ 505

Query: 531 HGNIELAEIAAKHLSELEPESAANN 555
           HG   LAE A K  + ++ +    N
Sbjct: 506 HG---LAEDAFKLFNRMQYDGQRPN 527



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 161/339 (47%), Gaps = 33/339 (9%)

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +++L+  Y + G ++ A+++FD M  +D+++  A+++ Y   G    A  + +++     
Sbjct: 44  LNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPL--- 100

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
             N  +WN L+S + ++G       LF     K    + VS+ ++I+GL       EA  
Sbjct: 101 -RNAASWNALVSLYLRAGRPAAAHALF----CKAPAKNAVSYGAIITGLARAGMLREAQA 155

Query: 337 TFKEMLSQGFCP--TSATISSILPACASAANMRRGKEIHGCAIVM--GVEG-DLHVRSAL 391
            + EM  +   P  ++A I   L          RG E+ G A+ +  G+   D+   SA+
Sbjct: 156 VYWEMPPRWRDPVGSNAMIWGYL----------RGGEL-GMALRVFDGMAARDVISWSAM 204

Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDH 450
           VD   K G +SEAR LF+ M ERN V+W SMI G   HG   + + LF  M  E  +++ 
Sbjct: 205 VDGLCKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNM 264

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY---ACMVDLLGRAGRLAEAYE 507
           ++ + VL  C    LV+ G ++  +M      M   E       ++ +  R G +A+A  
Sbjct: 265 ITLSVVLDGCAQASLVDEGSQVHCLMIR----MGFAEDIFLGDSLIIMYSRFGSMADARS 320

Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546
           +   M+ + D+  W +L+     +  IE A +  K + E
Sbjct: 321 LFSFMN-QKDIVSWNSLITGYVQNDMIEDAHVLFKLMPE 358


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 164/513 (31%), Positives = 273/513 (53%), Gaps = 42/513 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L++G+ +HA ++ +G  +    A  L+  Y++  +IH A ++F ++PKT++  W A  
Sbjct: 216 RDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFI 275

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK--ACGHLSDIGTGEKIHSLVLKHS 209
                 G+ Q A+ +  +M   GL  N+F + S+LK  A         G +IH  ++K  
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKAC 335

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVE 269
             +D ++  +L+DMY+K G ++ A+KVF+ +  KD++  NA++SG    G   E+L+L  
Sbjct: 336 ADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFC 395

Query: 270 EIGTPRVKPNVVTW-----------------------------------NTLISGFSKSG 294
            +       N  T                                    N LI  + K  
Sbjct: 396 RMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCN 455

Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
                +K+F+    +    +++++TS+I+ L      ++A   F EML +G  P    +S
Sbjct: 456 CLRYANKVFE----EHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLS 511

Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
           S+L ACAS +   +GK++H   I      D+   +ALV  YAKCG I +A   F  + ++
Sbjct: 512 SLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDK 571

Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
             V+W++MI G A HG+   A+++F +M +ER   +H++ T+VL AC H GLV+  +  F
Sbjct: 572 GVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYF 631

Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
           + M+E + I    EHY+CM+DLLGRAG+L +A E++ +M  E +  VWGALL A + H +
Sbjct: 632 SSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRD 691

Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            EL ++AA+ L  LEPE +  ++LL + YA+AG
Sbjct: 692 PELGKLAAEKLFVLEPEKSGTHVLLANTYASAG 724



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 150/540 (27%), Positives = 247/540 (45%), Gaps = 81/540 (15%)

Query: 77  SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLF 136
           SP + S  +  Y   ++L  G  +HA L+ SGL  L      L++FY++C+    AR +F
Sbjct: 3   SPESISPLLTRYAATQSLFLGAHIHAHLLKSGL--LHAFRNHLLSFYSKCRLPGSARRVF 60

Query: 137 DEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196
           DE P      W +L  AY+     +EA+  F  M  +G++ N F +P VLK      D G
Sbjct: 61  DETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCA---PDAG 117

Query: 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGY 255
            G ++H++ +      D FV ++L+ MY   G V++A++VFDE   +++ V+ N M+S +
Sbjct: 118 LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAF 177

Query: 256 VQRGLATEALNLVEEIGTPRVKPN-----------------------------------V 280
           V+    ++A+ L  E+    V+PN                                   V
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340
            T N L+  +SK GD  M + +F     K  + DVVSW + ISG V +  +  A +   +
Sbjct: 238 FTANALVDMYSKLGDIHMAALVF----GKVPKTDVVSWNAFISGCVLHGHDQHALELLLQ 293

Query: 341 MLSQGFCPTSATISSILP--ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398
           M S G  P   T+SSIL   A A A     G++IHG  I    + D ++  ALVDMYAK 
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKY 353

Query: 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVL 457
           G + +AR +F+ +  ++ + WN++I GC++ G   E++ LF +M +E   ++  +  AVL
Sbjct: 354 GLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVL 413

Query: 458 TACCHVGLVELGQRLFNMMQE-----------------------KYKIMPRTEH------ 488
            +   +  +    ++  + ++                       +Y      EH      
Sbjct: 414 KSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNII 473

Query: 489 -YACMVDLLGRAGRLAEAYEMIKTM---STEPDLFVWGALLGACKNHGNIELAEIAAKHL 544
            +  M+  L +     +A ++   M     EPD FV  +LL AC +    E  +    HL
Sbjct: 474 AFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 533


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 179/579 (30%), Positives = 289/579 (49%), Gaps = 76/579 (13%)

Query: 60  FIEAHYK-----MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQ 114
           FI  H+      +P++ R   L+  +    IE     +++   K + +Q+   GL     
Sbjct: 120 FISRHFSSSPHLVPVLLRISKLTKKSC---IECLRNCKSMDQLKQIQSQIFRIGLEGDRD 176

Query: 115 IATKLITFYTECQ--NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
              KL+ F  +    N+ +A  +F+ +   ++  +  +   YA+RG  ++ + +F ++  
Sbjct: 177 TINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLRE 236

Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            GL  + F  P VLKA G L D+  GEK+   ++K     D +V +SLIDMY +  +VE 
Sbjct: 237 DGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVEN 296

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTP-RVKPNVVTW-------- 283
           AKK+FDEM  +D V+ N M+SGYV+     +A+N   E+      KP+  T         
Sbjct: 297 AKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356

Query: 284 --------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGV------ 311
                                     N L+  ++K G   +   +F  M  K V      
Sbjct: 357 ALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSM 416

Query: 312 -------------------EP--DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
                               P  DVV WT++I+G V     D+A   F+EM  Q   P  
Sbjct: 417 ISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDK 476

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
            T+ ++L  CA    + +GK IHG      +  D+ V +AL++MY+KCG + ++  +F +
Sbjct: 477 FTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 536

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELG 469
           + +++T +W S+I G A +G   EA+ LF++ME    K D ++F  VL+AC H GLVE G
Sbjct: 537 LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEG 596

Query: 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV---WGALLG 526
           +R FN M++ ++I P+ EHY C++DLLGRAG L EA E+I+ +  E    V   +GALL 
Sbjct: 597 RRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLS 656

Query: 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           AC+ H N+++ E  AK L  +E   ++ + LL ++YA+ 
Sbjct: 657 ACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 695



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 163/337 (48%), Gaps = 5/337 (1%)

Query: 80  AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDE 138
            ++ RI+  + D   + G +  A+ I   ++    I  T +I+ Y  C ++  AR LFD+
Sbjct: 376 GFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 435

Query: 139 IPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198
            P  ++  W A+   Y +  +  +AV +F EM IQ +K + F + ++L  C  L  +  G
Sbjct: 436 SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG 495

Query: 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR 258
           + IH  + ++    D  V ++LI+MYSKCG V+K+ ++F E+ +KD  +  +++ G    
Sbjct: 496 KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMN 555

Query: 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVS 317
           G  +EAL L  E+     KP+ +T+  ++S  S  G      + F  M +   +EP V  
Sbjct: 556 GKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEH 615

Query: 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI 377
           +  VI  L      DEA +  +E+  +          ++L AC    N+  G+ +     
Sbjct: 616 YGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERL--AKK 673

Query: 378 VMGVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +  +E  D  + + L ++YA      +A+ +  KM E
Sbjct: 674 LENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKE 710


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 171/510 (33%), Positives = 261/510 (51%), Gaps = 49/510 (9%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTEC-QNIHHARMLFDEIPKTNIHRWIALTGAYA 155
           G   HA ++ SGL     +   L++ Y +   ++   R +FD +   +   W ++   Y 
Sbjct: 79  GLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYV 138

Query: 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
               H +A+ VF EM   GL+ N F + S +KAC  L ++  G   H +V+ H F  +  
Sbjct: 139 ASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHV 198

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV------- 268
           + S+L  MY        A++VFDEM E D++   A++S + +  L  EAL L        
Sbjct: 199 ISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGK 258

Query: 269 -------------------------EEIG----TPRVKPNVVTWNTLISGFSKSGDQVMV 299
                                    +EI     T  +  NVV  ++L+  + KSG     
Sbjct: 259 GLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREA 318

Query: 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILP 358
            ++F  M  K    ++VSW++++ G   N  +++A + F+EM  +  +C       ++L 
Sbjct: 319 RQVFNGMPRK----NIVSWSALLGGYCQNGEHEKAIEMFREMEEKDLYC-----FGTVLK 369

Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
           ACA  A +R GKEIHG  +  G  G++ V SAL+D+Y K G I  A  ++ KMS RN +T
Sbjct: 370 ACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMIT 429

Query: 419 WNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477
           WN+M+   A +G  +EA+  FN M ++  K D++SF AVLTAC H GLVE G+  F +M 
Sbjct: 430 WNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMA 489

Query: 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC-KNHGNIEL 536
           + Y I P TEHY+CM+DLLGRAG   EA  ++       D  +WG LLG C  N     +
Sbjct: 490 KSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRNDASLWGVLLGPCAANTDASSI 549

Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
           AE  AK + ELEP+   + +LL+++Y   G
Sbjct: 550 AERIAKRMMELEPKYHMSYVLLSNMYKAIG 579



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 199/417 (47%), Gaps = 46/417 (11%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G   +A+ + +  H   +     +  S+L+ C  +     G + H+ V+K    TD  V 
Sbjct: 39  GQLTDAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVG 98

Query: 218 SSLIDMYSKCG-SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
           +SL+ +Y K G  + + ++VFD M  KD ++  +M+SGYV      +AL +  E+ +  +
Sbjct: 99  NSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGL 158

Query: 277 KPNVVT------------------------------WNTLISG-----FSKSGDQVMVSK 301
           +PN  T                              WN +IS      +  + + V   +
Sbjct: 159 QPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARR 218

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSILPAC 360
           +F  M     EPDV+ WT+V+S    N   +EA   F  M   +G  P  +T  ++L AC
Sbjct: 219 VFDEM----PEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTAC 274

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
            +   +++GKEIHG  I  G+  ++ V S+L+DMY K G + EAR +F+ M  +N V+W+
Sbjct: 275 GNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWS 334

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
           +++ G   +G  ++AIE+F +MEE+   D   F  VL AC  +  V LG+ +      + 
Sbjct: 335 ALLGGYCQNGEHEKAIEMFREMEEK---DLYCFGTVLKACAGLAAVRLGKEIHGQYVRR- 390

Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
                    + ++DL G++G +  A  +   MS   ++  W A+L A   +G  E A
Sbjct: 391 GCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVR-NMITWNAMLSALAQNGRGEEA 446



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 143/267 (53%), Gaps = 9/267 (3%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L+ GK +H +LI +G+     + + L+  Y +  ++  AR +F+ +P+ NI  W AL 
Sbjct: 278 RRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALL 337

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
           G Y + G H++A+ +F EM     +++++   +VLKAC  L+ +  G++IH   ++    
Sbjct: 338 GGYCQNGEHEKAIEMFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCF 393

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
            +  V S+LID+Y K G ++ A +V+ +M  ++++  NAM+S   Q G   EA++   ++
Sbjct: 394 GNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDM 453

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFC 330
               +KP+ +++  +++    +G        F LM ++ G++P    ++ +I  L     
Sbjct: 454 VKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGL 513

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSIL 357
            +EA    + +L +  C   A++  +L
Sbjct: 514 FEEA----ENLLDRAECRNDASLWGVL 536


>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
          Length = 705

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 256/495 (51%), Gaps = 33/495 (6%)

Query: 105 IVSGLARLTQ-IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA 163
           I SG AR    +   L+  + +C  +  AR +F+ +   ++  W A+ G     G   E 
Sbjct: 185 IASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEV 244

Query: 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223
           V +F+ M  +G   +  +  +V+ ACG   ++  G  +H   +K     D +V ++L+DM
Sbjct: 245 VDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDM 304

Query: 224 YSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
           Y KCG VE A  +F     KD+V+ ++++ GY Q G+   +++L  E+ +  + PN  T 
Sbjct: 305 YCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTL 364

Query: 284 NTLISGFS-----KSGDQV--------------MVSKLFQLMRAKGV------------E 312
            +++   S     +SG ++              +VS L  L   +G+            +
Sbjct: 365 ASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLD 424

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
            D+  W S+++G   N  +D AF   + +   G  P   T+ S+LP C     + +GKE+
Sbjct: 425 KDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKEL 484

Query: 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           H   I   +     V +AL+DMY KCGF+  A+ +F  M+ERNTVT+N +I     H + 
Sbjct: 485 HAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHE 544

Query: 433 DEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491
           D+A+  F+ M+      D ++F A+L+ C H GL++ G  L++ M   Y I P  EHY+C
Sbjct: 545 DQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSC 604

Query: 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551
           +VDL  R G+L EA+  +  M+ EP++ V G LL AC+ H  +++AE+  K + E  P  
Sbjct: 605 IVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPND 664

Query: 552 AANNMLLTDLYANAG 566
              ++LL+++YA+AG
Sbjct: 665 PGYHILLSNIYADAG 679



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/521 (27%), Positives = 232/521 (44%), Gaps = 88/521 (16%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
            Q  + LHA ++V G    T +  +L+  Y +  ++ HA  +FD +P+ N   W A+   
Sbjct: 69  FQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKG 128

Query: 154 YARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
               G   EA+ +F  M   G +  + F  P V+KAC  L  +  G K+  +V       
Sbjct: 129 LVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVETDIASG 188

Query: 213 DA----FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV 268
           +A    FV  +L+DM++KCG +++A+ VF+ M  +D+ A  AM+ G V  G   E ++L 
Sbjct: 189 NARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLF 248

Query: 269 E---------------------------EIGTP----RVKP----NVVTWNTLISGFSKS 293
                                       ++GT      VK     ++   N L+  + K 
Sbjct: 249 NHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKC 308

Query: 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
           G   M   LF    +K    DVVSW+S+I G   N  ++ +   F EM+S G  P S+T+
Sbjct: 309 GCVEMADCLFWSTNSK----DVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTL 364

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +SILP  +    +R GKEIH  +I  G+E    V SAL+D+Y+K G I  A T+F    +
Sbjct: 365 ASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLD 424

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC------------ 460
           ++   WNSM+ G A +GY D A      +++   K DH++  +VL  C            
Sbjct: 425 KDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKEL 484

Query: 461 -----------------------CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497
                                  C  G +E+ + +F +M E+      T  Y  ++   G
Sbjct: 485 HAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTER-----NTVTYNILISSFG 539

Query: 498 RAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
           +     +A   ++++K     PD   + ALL  C + G I+
Sbjct: 540 KHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLID 580



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 192/411 (46%), Gaps = 58/411 (14%)

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L++C    D     ++H+ VL    G    +V+ L+  Y+K G V  A +VFD M  ++ 
Sbjct: 63  LQSC---PDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNS 119

Query: 246 VAMNAMVSGYVQRGLATEAL---------------------------------------N 266
            A NA++ G V  G  +EAL                                        
Sbjct: 120 FAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWE 179

Query: 267 LVE-EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325
           +VE +I +   +PNV     L+  F+K G       +F+ M+ +    D+ +WT++I G 
Sbjct: 180 MVETDIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVR----DLAAWTAMIGGT 235

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           VH+    E  D F  M S+GF   S   ++++ AC  A  ++ G  +HGCA+  G  GD+
Sbjct: 236 VHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDI 295

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445
           +V +ALVDMY KCG +  A  LF   + ++ V+W+S+I G + +G  + ++ LF +M   
Sbjct: 296 YVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISL 355

Query: 446 KKLDHLSFTAVLTACCHV-GLVELGQRL--FNMMQEKYKIMPRTEH-YACMVDLLGRAGR 501
               + S  A +  C  V  L+  G+ +  F++       + R+E   + ++DL  + G 
Sbjct: 356 GINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHG----LERSEFVVSALIDLYSKQG- 410

Query: 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPE 550
           L    E I  ++ + DL +W +++     +G  + A  A + L +  L+P+
Sbjct: 411 LIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPD 461



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 184/430 (42%), Gaps = 47/430 (10%)

Query: 90  RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149
           R   LQ G  LH   + SG +    ++  L+  Y +C  +  A  LF      ++  W +
Sbjct: 272 RAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSS 331

Query: 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209
           L   Y++ G H  +V++F EM   G+  N   + S+L     L  I +G++IH   ++H 
Sbjct: 332 LIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHG 391

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATE---ALN 266
                FVVS+LID+YSK G +  A+ +F   ++KD+   N+MV+GY   G +     AL 
Sbjct: 392 LERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALR 451

Query: 267 LVEEIGTPRVKPNVVTW-----------------------------------NTLISGFS 291
           L++++G   +KP+ VT                                    N L+  + 
Sbjct: 452 LLQKVG---LKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYC 508

Query: 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351
           K G   +  ++FQLM     E + V++  +IS    +   D+A   F  M   G  P   
Sbjct: 509 KCGFLEVAKEVFQLM----TERNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKV 564

Query: 352 TISSILPACASAANMRRGKEI-HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
           T  ++L  C+ A  + +G  + H       +  +    S +VD+Y++CG + EA      
Sbjct: 565 TFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSN 624

Query: 411 MSERNTV-TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469
           M+E   +     ++  C  H   D A  +  ++ E+   D      +       G+    
Sbjct: 625 MAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPNDPGYHILLSNIYADAGMWSDV 684

Query: 470 QRLFNMMQEK 479
            R+  M+QE+
Sbjct: 685 TRIRTMIQER 694



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 149/330 (45%), Gaps = 15/330 (4%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           + ++SGK +H   I  GL R   + + LI  Y++   I  A  +F      ++  W ++ 
Sbjct: 375 KLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMV 434

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
             YA  GY   A      +   GLK +   + SVL  C     +  G+++H+ V+K+   
Sbjct: 435 AGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCIN 494

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
           +   V ++L+DMY KCG +E AK+VF  M E++ V  N ++S + +     +AL+  + +
Sbjct: 495 SVCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLM 554

Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL----MRAKGVEPDVVSWTSVISGLVH 327
               + P+ VT+  L+S  S +G   ++ K   L    +    + P+   ++ ++   ++
Sbjct: 555 KRDGIAPDKVTFVALLSCCSHAG---LIDKGLHLYHSMLHDYNISPEKEHYSCIVD--LY 609

Query: 328 NFCN--DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           + C   DEA+     M  +   P    +  +L AC    N     E+ G  I      D 
Sbjct: 610 SRCGKLDEAWCFMSNMAEE---PEIDVLGGLLAAC-RVHNRMDIAELVGKRIFEQNPNDP 665

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERN 415
                L ++YA  G  S+   +   + ERN
Sbjct: 666 GYHILLSNIYADAGMWSDVTRIRTMIQERN 695



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           +S+L    S  + +  + +H   +V G      + + LV  YAK G ++ A  +FD M  
Sbjct: 57  ASLLLRLQSCPDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPR 116

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQR 471
           RN+  WN++I G  + G   EA+E+F  M  +    +D  ++  V+ AC  +G V  G++
Sbjct: 117 RNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRK 176

Query: 472 LFNMMQEKY---KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           ++ M++         P       +VD+  + G L EA  + ++M    DL  W A++G  
Sbjct: 177 VWEMVETDIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVR-DLAAWTAMIGGT 235

Query: 529 KNHGN 533
            + GN
Sbjct: 236 VHSGN 240


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 253/470 (53%), Gaps = 40/470 (8%)

Query: 98  KILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           K +H   +V GL ++   +   LI  Y +      AR LFDE+   N+  +  +   +A+
Sbjct: 82  KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAK 141

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G     + +FH+M   GL+ + F +  +L  CG L +   G+ +H+ + K    ++  +
Sbjct: 142 VGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLIL 201

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY KC  ++ A+KVFD  +EKD                                
Sbjct: 202 YNALLDMYVKCNELKLARKVFDGPMEKD-------------------------------- 229

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
               V+WNT+I+G++K G+  +   LF  +  +    D+VSW S+ISG   N        
Sbjct: 230 ---TVSWNTIIAGYAKVGELELACDLFNQIPTR----DIVSWNSLISGYAQNGDYVTVKC 282

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F  M ++   P   TI +++ A A    + +G+ IHG A+ M  + +    SAL+DMY 
Sbjct: 283 LFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYC 342

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAV 456
           KCG I  A  +F+++ E++  TW +MI G A HG+ ++A+ELF+ M+   K + ++F +V
Sbjct: 343 KCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSV 402

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L AC H GLV+ G ++F+ M+++Y I P  EHY C+VDLL R+GRL +A  +I+ M  EP
Sbjct: 403 LAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEP 462

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              +WGA+L AC+ H N+ELAE A   L +LEPE     +LL+++YA  G
Sbjct: 463 SRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCG 512



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P++  + ++I G    F N++AF  ++ ML  G  P   T   +L      A +   K+I
Sbjct: 30  PNLYIFNTMILGF--PFSNEKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEV---KQI 84

Query: 373 HGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           H  A+V G +  + ++R++L+  Y   G    AR LFD+MS+RN V++N+MI G A  G 
Sbjct: 85  HCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGN 144

Query: 432 CDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
               +ELF+ M     + D  +   +L  C  +G  +LG+ +   + EK         Y 
Sbjct: 145 ILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQI-EKSIGSSNLILYN 203

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            ++D+  +   L  A ++      E D   W  ++      G +ELA
Sbjct: 204 ALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKVGELELA 249


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 167/514 (32%), Positives = 275/514 (53%), Gaps = 43/514 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L +GK++H  ++V GL     +   LI  Y++C  + +AR+LFD   K +   W +L   
Sbjct: 176 LSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAG 235

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT----GEKIHSLVLKHS 209
           Y + G ++E +T+  +MH  GL  N + + S LKAC   S+       G  +H   +K  
Sbjct: 236 YVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACS--SNFNGCKMFGTMLHDHAIKLG 293

Query: 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR-----GLATEA 264
              D  V ++L+DMY+K GS++ A ++FD+MV+K++V  NAM++G +Q+       A +A
Sbjct: 294 LHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKA 353

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISG--------FSKS-----------GDQVMVSKLFQL 305
           LNL  E+ +  +KP++ T+++L+          F+K             D+ + S L  L
Sbjct: 354 LNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDL 413

Query: 306 MRAKGVEPD------------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
               G   D            +V  T++I G + N   + A   F E+L+    P     
Sbjct: 414 YSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIX 473

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
           S+I+ +CA+   +R G++I G A  +G+      +++ + MYAK G +  A   F +M  
Sbjct: 474 STIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMEN 533

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDHLSFTAVLTACCHVGLVELGQRL 472
            + V+W++MI   A HG+  EA+  F  M+    + +H +F  VL AC H GLVE G R 
Sbjct: 534 PDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRY 593

Query: 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           F+ M++ YK+    +H  C+VDLLGRAGRLA+A  +I  +  E +  +W ALL AC+ H 
Sbjct: 594 FDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHK 653

Query: 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           +   A+  A+ + ELEP ++A+ +LL ++Y +AG
Sbjct: 654 DTVTAQRVAQKVIELEPLASASYVLLYNIYMDAG 687



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/544 (23%), Positives = 243/544 (44%), Gaps = 80/544 (14%)

Query: 68  PIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
           P  S +F L    Y + ++   +   L  GK++H+ +I +       +   L+  Y +C 
Sbjct: 49  PAYSSTFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCG 108

Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187
           +   A  LFD++ K+NI  + +L   Y +     + + +F +    GLK + +     L 
Sbjct: 109 DTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALT 168

Query: 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA 247
           AC    ++  G+ IH L+L +  G+   + +SLIDMYSKCG V+ A+ +FD   + D V+
Sbjct: 169 ACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVS 228

Query: 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPN---------------------------- 279
            N++++GYVQ G   E L +++++    +  N                            
Sbjct: 229 WNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDH 288

Query: 280 ---------VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL----- 325
                    VV    L+  ++K+G      ++F  M    V+ +VV + ++++GL     
Sbjct: 289 AIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQM----VDKNVVMYNAMMAGLLQQET 344

Query: 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385
           + + C  +A + F EM S G  P+  T SS+L AC    + +  K++H      G+  D 
Sbjct: 345 IEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDE 404

Query: 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-MEE 444
           ++ S L+D+Y+  G + +A   F+ +     V   +MI G   +G  + A+ LF + +  
Sbjct: 405 YIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTY 464

Query: 445 RKKLDHLSFTAVLTACCHVGLVELGQRL-----------FNMMQEKYKIM---------- 483
            +K D    + ++++C ++G++  G+++           F + Q     M          
Sbjct: 465 EEKPDEFIXSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAA 524

Query: 484 ---------PRTEHYACMVDLLGRAGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNH 531
                    P    ++ M+    + G   EA   +E++K+   EP+ F +  +L AC + 
Sbjct: 525 NLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHR 584

Query: 532 GNIE 535
           G +E
Sbjct: 585 GLVE 588


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 161/504 (31%), Positives = 261/504 (51%), Gaps = 40/504 (7%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LHA ++ S           LI+ YT+   +  A  +F  I   ++  W ++   +++ GY
Sbjct: 221 LHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGY 280

Query: 160 HQEAVTVFHEMHIQGLKQ-NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS 218
             EA+  F EM  Q + Q N FV  S   AC  L +   G +IH L +K   G+D F   
Sbjct: 281 ELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGC 340

Query: 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
           SL DMY+KCG +E A+ VF  + + D+VA NA+++G+     A E+ +   ++    + P
Sbjct: 341 SLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVP 400

Query: 279 NVVT-----------------------------------WNTLISGFSKSGDQVMVSKLF 303
           N VT                                    N+L+S +SK  +   ++   
Sbjct: 401 NDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSN---LNDAL 457

Query: 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
           Q+    G + D+VSW ++++  +      E     K M +    P   T++++L +    
Sbjct: 458 QVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQI 517

Query: 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMI 423
           A+   G +IH   +  G+  D+ V +AL++MY KCG +  AR +FD +   + ++W+S+I
Sbjct: 518 ASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLI 577

Query: 424 FGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482
            G A  G   EA ELF  M     K + ++F  +LTAC H+G+VE G +L+  MQE Y+I
Sbjct: 578 VGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRI 637

Query: 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542
            P  EH +CMVDLL RAG L  A + IK M   PD+ VW  LL ACK HGN+E+ + AA+
Sbjct: 638 SPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAE 697

Query: 543 HLSELEPESAANNMLLTDLYANAG 566
           ++ +++P ++A  ++L +++A++G
Sbjct: 698 NVLKIDPSNSAAVVMLCNIHASSG 721



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 228/484 (47%), Gaps = 36/484 (7%)

Query: 76  LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
           L    Y+  I      R+L+ G+ +H  ++         +   +++ Y +C ++  AR +
Sbjct: 96  LKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNM 155

Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
           FD +P  N+  W ++   Y+R G    A+T++ +M   G   + F   S++K+C  L D 
Sbjct: 156 FDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDF 215

Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
               ++H+ VLK  FG D    ++LI MY+K   +  A  VF  ++ KD+++  +M++G+
Sbjct: 216 KLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGF 275

Query: 256 VQRGLATEALNLVEEIGTPRV-KPNVVTWNTLISGFSK-----SGDQV------------ 297
            Q G   EAL    E+ +  V +PN   + +  S  SK      G Q+            
Sbjct: 276 SQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSD 335

Query: 298 ---------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
                    M +K   L  A+ V     +PD+V+W ++I+G        E+   F +M  
Sbjct: 336 LFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRH 395

Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
            G  P   T+ S+L AC+    +  G ++H   + MG   D+ V ++L+ MY+KC  +++
Sbjct: 396 TGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLND 455

Query: 404 ARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACC 461
           A  +F+ +  + + V+WN+++  C       E + L   M   R K DH++ T VL +  
Sbjct: 456 ALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSG 515

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521
            +   E+G ++   + +    +  +   A ++++  + G L  A +M  ++   PD+  W
Sbjct: 516 QIASYEVGSQIHCFIMKSGLNLDISVSNA-LINMYTKCGSLECARKMFDSIGN-PDIISW 573

Query: 522 GALL 525
            +L+
Sbjct: 574 SSLI 577



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 209/451 (46%), Gaps = 49/451 (10%)

Query: 156 RRGYHQEAVT---VFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
           ++  H+EA+    +F +     LK   +    ++ AC  L  +  G KIH  +L  ++  
Sbjct: 74  KKNLHREALKAFDIFQKCSSSPLKSVTYT--HLINACSSLRSLEHGRKIHRHMLTCNYQP 131

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D  + + ++ MY KCGS+++A+ +FD M  K++V+  +M+SGY + G    A+ L  ++ 
Sbjct: 132 DMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQML 191

Query: 273 TPRVKPNVVTWNTLISGFSKSGD-----QV---------------------MVSKLFQLM 306
                P+  T+ +++   S   D     Q+                     M +K  Q+ 
Sbjct: 192 RSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMA 251

Query: 307 RAKGVEP-----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSILPAC 360
            A  V       D++SW S+I+G        EA   F+EMLSQ  + P      S   AC
Sbjct: 252 DAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSAC 311

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +       G++IHG  I  G+  DL    +L DMYAKCGF+  ART+F  + + + V WN
Sbjct: 312 SKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWN 371

Query: 421 SMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           ++I G A+     E+   F+QM     + + ++  ++L AC    ++  G ++ + +   
Sbjct: 372 AIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYI--- 428

Query: 480 YKIMPRTEHYAC--MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC--KNHGNIE 535
            K+    +   C  ++ +  +   L +A ++ + +  + D+  W  LL AC  +N     
Sbjct: 429 VKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEV 488

Query: 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           L        S ++P+    ++ LT++  ++G
Sbjct: 489 LRLTKLMFASRIKPD----HVTLTNVLVSSG 515



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 165/377 (43%), Gaps = 52/377 (13%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G+ +H   I  GL         L   Y +C  +  AR +F  I K ++  W A+   +A 
Sbjct: 320 GRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFAS 379

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +E+ + F +M   GL  N   + S+L AC     +  G ++HS ++K  F  D  V
Sbjct: 380 VSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV 439

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
            +SL+ MYSKC ++  A +VF+++  K DIV+ N +++  +Q+  A E L L + +   R
Sbjct: 440 CNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASR 499

Query: 276 VKPNVVTW-----------------------------------NTLISGFSKSGDQVMVS 300
           +KP+ VT                                    N LI+ ++K G      
Sbjct: 500 IKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECAR 559

Query: 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
           K+F  +      PD++SW+S+I G     C  EAF+ F+ M   G  P   T   IL AC
Sbjct: 560 KMFDSIG----NPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTAC 615

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVR------SALVDMYAKCGFISEARTLFDKMS-E 413
           +    +  G +++       ++ D  +       S +VD+ A+ G +  A     +M   
Sbjct: 616 SHIGMVEEGLKLY-----RTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFV 670

Query: 414 RNTVTWNSMIFGCANHG 430
            + V W +++  C  HG
Sbjct: 671 PDVVVWKTLLAACKVHG 687


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 163/518 (31%), Positives = 276/518 (53%), Gaps = 45/518 (8%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           +++GK +HA +++ GL     ++  + + Y  C  +  AR +FD   + +   W AL   
Sbjct: 118 VRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSG 177

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL------SDIGTG---EKIHSL 204
           Y R G  +E + VF  M   GL  N F + S++K C          D+G G   E +H  
Sbjct: 178 YVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGC 237

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR---GLA 261
           V+K     D F+ S++IDMY+K G++  A  +F  + + +++ +NAM++G+ +     +A
Sbjct: 238 VVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVA 297

Query: 262 TEALNLVEEIGTPRVKPNVVTWNTLIS--------GFSKS-----------GDQVMVSKL 302
            EAL L  E+ +  ++P+  ++++++         GF K            GD  + S L
Sbjct: 298 REALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSAL 357

Query: 303 FQLMRAKGV------------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350
             L    G             + DVV WTSVISG V N   +EA   F+E +  G  P  
Sbjct: 358 IDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDV 417

Query: 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410
             +SS++ ACAS A  R G++I   A+  G      + ++ + M A+ G +  A   F +
Sbjct: 418 FAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQE 477

Query: 411 MSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLDHLSFTAVLTACCHVGLVEL 468
           M  R+ V+W+++I   A+HG   +A+ +FN+M + K    + ++F ++LTAC H GLV+ 
Sbjct: 478 MESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDE 537

Query: 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGAC 528
           G R + +M ++Y + P  +H  C+VDLLGRAGRLA+A   I+  +   D  VW +LL +C
Sbjct: 538 GLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASC 597

Query: 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           + HG++E  ++ A  + +LEP S+A+ ++L ++Y +AG
Sbjct: 598 RIHGDMERGQLVADKIMDLEPTSSASYVILYNMYLDAG 635



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 207/454 (45%), Gaps = 62/454 (13%)

Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190
           HA  L DE+P+ N   +  +  AY+R G    ++  F          + F   + L AC 
Sbjct: 54  HAARLLDEMPRRNAVSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACS 113

Query: 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNA 250
              D+ TG+ +H++V+    G   F+ +S+  MY++CG + +A++VFD   E+D V+ NA
Sbjct: 114 RALDVRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNA 173

Query: 251 MVSGYVQRGLATEALNLVE-------------------------------EIGTPRV--- 276
           ++SGYV+ G   E L +                                 ++G  R+   
Sbjct: 174 LLSGYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEA 233

Query: 277 ----------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
                       ++   + +I  ++K G       LF+ +     +P+V+   ++I+G  
Sbjct: 234 VHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSV----PDPNVIVLNAMIAG-- 287

Query: 327 HNFCNDEAFDTFKEML-------SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379
             FC +EA D  +E L       S+G  P+  + SSIL AC  A     GK+IHG  +  
Sbjct: 288 --FCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKH 345

Query: 380 GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439
             +GD+++ SAL+D+Y+  G + +    F  + +++ V W S+I GC  +   +EA+ LF
Sbjct: 346 SFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLF 405

Query: 440 NQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498
            + +    + D  + ++V+ AC  + +   G+++   +  K      T      + +  R
Sbjct: 406 QESVRCGLRPDVFAMSSVMNACASLAVARTGEQI-QCLAVKSGFNRFTAMGNSFIHMCAR 464

Query: 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
           +G +  A    + M +  D+  W A++ +  +HG
Sbjct: 465 SGDVDAATRRFQEMESR-DVVSWSAVISSHAHHG 497



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 197/424 (46%), Gaps = 51/424 (12%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR-- 157
           +H  ++ +GL     +A+ +I  Y +   + +A  LF  +P  N+    A+   + R   
Sbjct: 234 VHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEA 293

Query: 158 -GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
               +EA+ ++ E+  +G++ + F   S+L+AC    + G G++IH  VLKHSF  D ++
Sbjct: 294 ADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYI 353

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            S+LID+YS  G +E   + F  + ++D+V   +++SG VQ  L  EAL L +E     +
Sbjct: 354 GSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGL 413

Query: 277 KPNVVTWNTLI---------------------SGF--------------SKSGDQVMVSK 301
           +P+V   ++++                     SGF              ++SGD    ++
Sbjct: 414 RPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATR 473

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA-TISSILPAC 360
            FQ M ++    DVVSW++VIS   H+ C  +A   F EML     P +  T  SIL AC
Sbjct: 474 RFQEMESR----DVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILTAC 529

Query: 361 ASAANMRRGKEIHGCAIVM----GVEGDLHVRSALVDMYAKCGFISEARTLF-DKMSERN 415
           +    +  G   +G   +M    G+   +   + +VD+  + G +++A     D     +
Sbjct: 530 SHGGLVDEGLRYYG---IMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDD 586

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475
            V W S++  C  HG  +    + +++ + +     S+  +       G +    +  ++
Sbjct: 587 AVVWRSLLASCRIHGDMERGQLVADKIMDLEPTSSASYVILYNMYLDAGELSSASKTRDL 646

Query: 476 MQEK 479
           M+E+
Sbjct: 647 MKER 650


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 160/512 (31%), Positives = 261/512 (50%), Gaps = 46/512 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           R L  GK++H  L    +     + + LI  YT+C  ++ A  +F E PK ++  W ++ 
Sbjct: 256 RKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSII 315

Query: 152 GAYARRGYHQEAVTVFHEMHI-QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
             Y + G  + A+  F  M + + +  +   + SV  AC  LS+   G  +H  V +   
Sbjct: 316 SGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGL 375

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
                + +SL+ +Y K GS++ A  +F EM +KDI++ + MV+ Y   G  T+ L+L  E
Sbjct: 376 DNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNE 435

Query: 271 IGTPRVKPNVVTWNTLIS------------------------GFSKSGDQVMVSKLFQLM 306
           +   R+KPN   W T++S                        GF     +  VS     M
Sbjct: 436 MLDKRIKPN---WVTVVSVLRACACISNLEEGMKIHELAVNYGFEM---ETTVSTALMDM 489

Query: 307 RAKGVEP-------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
             K   P             DV++W  + SG   N    E+   F+ MLS G  P +  +
Sbjct: 490 YMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIAL 549

Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413
             IL   +    +++   +H   I  G E +  + ++L+++YAKC  I +A  +F  M+ 
Sbjct: 550 VKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTY 609

Query: 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLDHLSFTAVLTACCHVGLVELGQR 471
           ++ VTW+S+I     HG  +EA++LF QM      K ++++F ++L+AC H GL++ G  
Sbjct: 610 KDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGIN 669

Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
           +F++M  KYK+ P +EHYA MVDLLGR G L  A ++I  M  +    +WGALLGAC+ H
Sbjct: 670 MFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIH 729

Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
            NI++ E+AAK+L  L+P  A   +LL+++Y+
Sbjct: 730 QNIKMGEVAAKNLFSLDPNHAGYYILLSNIYS 761



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 228/485 (47%), Gaps = 58/485 (11%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           LH+Q + +GL   + I TKL   Y    +IHHA  LF E P   ++ W AL  +Y   G 
Sbjct: 158 LHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGE 217

Query: 160 HQEAVTVFHEMH------IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
             E +++F +M+      I+    N + +   LK+C  L  +  G+ IH  + K     D
Sbjct: 218 WVETLSLFRQMNNVSSVSIEERPDN-YSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGD 276

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE-IG 272
            FV S+LID+Y+KCG +  A KVF E  + D+V   +++SGY Q G    AL      + 
Sbjct: 277 MFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVV 336

Query: 273 TPRVKPNVVTW-----------------------------------NTLISGFSKSGDQV 297
           + +V P+ VT                                    N+L+  + K+G   
Sbjct: 337 SEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIK 396

Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
             S LF+ M  K    D++SW+++++    N    +  D F EML +   P   T+ S+L
Sbjct: 397 NASNLFREMSDK----DIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVL 452

Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
            ACA  +N+  G +IH  A+  G E +  V +AL+DMY KC    +A  LF++M +++ +
Sbjct: 453 RACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVI 512

Query: 418 TWNSMIFGCANHGYCDEAIELF-NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            W  +  G A++G   E++ +F N +    + D ++   +LT    +G+++    L    
Sbjct: 513 AWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCL---- 568

Query: 477 QEKYKIMPRTEHY----ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              + I    E+     A ++++  +   + +A ++ K M T  D+  W +++ A   HG
Sbjct: 569 -HAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGM-TYKDVVTWSSIIAAYGFHG 626

Query: 533 NIELA 537
             E A
Sbjct: 627 QGEEA 631



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 187/404 (46%), Gaps = 47/404 (11%)

Query: 167 FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
           FHE  ++  ++N+ V   +L+ C     I    ++HS  LK     D+F+V+ L  +Y++
Sbjct: 131 FHEWLME--RRNLLV--KLLETCCSKLSIS---QLHSQCLKAGLVHDSFIVTKLNVLYAR 183

Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG-----TPRVKPN-- 279
             S+  A K+F E   + +   NA++  Y   G   E L+L  ++      +   +P+  
Sbjct: 184 YASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNY 243

Query: 280 -------------VVTWNTLISGFSK----SGDQVMVSKLFQLMRAKG------------ 310
                         +    +I GF K     GD  + S L  L    G            
Sbjct: 244 SVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEY 303

Query: 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEM-LSQGFCPTSATISSILPACASAANMRRG 369
            +PDVV WTS+ISG   +   + A   F  M +S+   P   T+ S+  ACA  +N + G
Sbjct: 304 PKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLG 363

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
           + +HG     G++  L + ++L+ +Y K G I  A  LF +MS+++ ++W++M+   A++
Sbjct: 364 RSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADN 423

Query: 430 GYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G   + ++LFN+M ++R K + ++  +VL AC  +  +E G ++   +   Y     T  
Sbjct: 424 GAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE-LAVNYGFEMETTV 482

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532
              ++D+  +     +A ++   M  + D+  W  L     ++G
Sbjct: 483 STALMDMYMKCFSPEKAVDLFNRMPKK-DVIAWAVLFSGYADNG 525


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 238/441 (53%), Gaps = 36/441 (8%)

Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           G  + A+  F  M   G++ + +  P+VLKACG       G  +H+  ++   G D F V
Sbjct: 92  GRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTV 151

Query: 218 SSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYV---QRGLATE--------- 263
           ++LI  Y +       +KVFDE   V +D+V+ N+MV+GYV   + GLA E         
Sbjct: 152 NALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQELFDEMPQRD 211

Query: 264 -----------------ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306
                             ++   E+     + ++V WN++I G+++ G       LF+ M
Sbjct: 212 AFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEM 271

Query: 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366
                E +V+SW+ VI G V      EA + F+ ML  G  P        + ACA    +
Sbjct: 272 ----PERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGAL 327

Query: 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426
            +G+ +H       V  D+ V++AL+DMY KCG +  A  +F+ M ER+ VTWN MI G 
Sbjct: 328 EQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGL 387

Query: 427 ANHGYCDEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485
             HGY  +A+ LF++ME ER  +D LS  A+LTAC H GLV  G  +F+ M++ + I P+
Sbjct: 388 GTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPK 447

Query: 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545
            EHY  +VDLLGRAGRL +A   I+TM  EP   +WG+LL AC++H  +ELAE++ + L+
Sbjct: 448 VEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLA 507

Query: 546 ELEPESAANNMLLTDLYANAG 566
            L  + +   +LL+++YA+ G
Sbjct: 508 NLGADDSGVYVLLSNIYADEG 528



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK 176
             +I  Y     +  AR LF+E+P+ N+  W  +   + R G  +EA+  F  M   G++
Sbjct: 249 NSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIR 308

Query: 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236
            +       + AC  L  +  G  +HS + K    +D  V ++LIDMY KCG ++ A  +
Sbjct: 309 PDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLI 368

Query: 237 FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296
           F+ M E+ +V  N M+ G    G   +A+ L   +   RV  + ++   +++  + +G  
Sbjct: 369 FESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLV 428

Query: 297 VMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
               ++F  M+   G++P V  + +++  L      D+A    + M  +   PT     S
Sbjct: 429 SEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPME---PTPELWGS 485

Query: 356 ILPACAS 362
           +L AC S
Sbjct: 486 LLAACRS 492



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 5/242 (2%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ G+ LH+ L    +     + T LI  Y +C  +  A ++F+ +P+ ++  W  +  
Sbjct: 326 ALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIV 385

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
                GY  +AV +FH M  + +  +   + ++L AC H   +  G +I    +K  FG 
Sbjct: 386 GLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHR-MKKDFGI 444

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL-VE 269
           D  V    +L+D+  + G +++A+   + M  +    +   +    +     E   L VE
Sbjct: 445 DPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVE 504

Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            +       + V +  L + ++  G    V ++ +LM  +G+  D+      + G +H F
Sbjct: 505 RLANLGADDSGV-YVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEF 563

Query: 330 CN 331
            N
Sbjct: 564 VN 565


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 158/470 (33%), Positives = 253/470 (53%), Gaps = 40/470 (8%)

Query: 98  KILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           K +H   +V GL ++   +   LI  Y +      AR LFDE+   N+  +  +   +A+
Sbjct: 147 KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAK 206

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
            G     + +FH+M   GL+ + F +  +L  CG L +   G+ +H+ + K    ++  +
Sbjct: 207 VGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLIL 266

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
            ++L+DMY KC  ++ A+KVFD  +EKD                                
Sbjct: 267 YNALLDMYVKCNELKLARKVFDGPMEKD-------------------------------- 294

Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFD 336
               V+WNT+I+G++K G+  +   LF  +  +    D+VSW S+ISG   N        
Sbjct: 295 ---TVSWNTIIAGYAKVGELELACDLFNQIPTR----DIVSWNSLISGYAQNGDYVTVKC 347

Query: 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396
            F  M ++   P   TI +++ A A    + +G+ IHG A+ M  + +    SAL+DMY 
Sbjct: 348 LFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYC 407

Query: 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAV 456
           KCG I  A  +F+++ E++  TW +MI G A HG+ ++A+ELF+ M+   K + ++F +V
Sbjct: 408 KCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSV 467

Query: 457 LTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP 516
           L AC H GLV+ G ++F+ M+++Y I P  EHY C+VDLL R+GRL +A  +I+ M  EP
Sbjct: 468 LAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEP 527

Query: 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
              +WGA+L AC+ H N+ELAE A   L +LEPE     +LL+++YA  G
Sbjct: 528 SRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCG 577



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           P++  + ++I G    F N++AF  ++ ML  G  P   T   +L      A +   K+I
Sbjct: 95  PNLYIFNTMILGF--PFSNEKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEV---KQI 149

Query: 373 HGCAIVMG-VEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431
           H  A+V G +  + ++R++L+  Y   G    AR LFD+MS+RN V++N+MI G A  G 
Sbjct: 150 HCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGN 209

Query: 432 CDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490
               +ELF+ M     + D  +   +L  C  +G  +LG+ +   + EK         Y 
Sbjct: 210 ILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQI-EKSIGSSNLILYN 268

Query: 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            ++D+  +   L  A ++      E D   W  ++      G +ELA
Sbjct: 269 ALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKVGELELA 314


>gi|414866221|tpg|DAA44778.1| TPA: hypothetical protein ZEAMMB73_421222 [Zea mays]
          Length = 595

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 243/472 (51%), Gaps = 44/472 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA  +  G      ++  LIT Y    +   AR +FDE+P+ ++  W +L  +YAR G+
Sbjct: 137 VHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDEMPRRDVVSWNSLISSYARAGW 196

Query: 160 HQEAVTVFHEMH----IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215
           +++ + +F E+       G++ N   + SVL AC  L  +  G ++H L  ++   +D  
Sbjct: 197 YRQCLELFQELASVHGAGGVRPNNVTVASVLHACAQLKAVDFGVRVHRLAAENGLDSDIA 256

Query: 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275
           V +S +  Y+KCG ++ A+++FD M +KD                               
Sbjct: 257 VWNSAVGFYAKCGRLKYARELFDGMAKKD------------------------------- 285

Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
                V+++T+I+G+   G   M  +LFQ    +G+      W +VI+GL+ +    +  
Sbjct: 286 ----AVSYSTMIAGYMNHGHVDMGLELFQRADVQGIS----IWNAVIAGLIQHGRQSDVL 337

Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
               EM+  G  P SAT+S ++P+    + +   K+ HG AI    +  + V +AL+D Y
Sbjct: 338 GLLNEMIGSGMLPNSATLSILIPSVHLFSTLLGVKQAHGYAIRNNYDQSIGVVTALIDAY 397

Query: 396 AKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFT 454
           +K GF+  +R +F    +R+ + W S+I   A HG   EA+ LFN+M     +LD ++FT
Sbjct: 398 SKAGFLDGSRRVFKLTDDRSEIVWTSIISAVAAHGEAAEALHLFNEMVNAGIRLDTIAFT 457

Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
           AVLTAC H G V   +++FN MQ  + I P  E YACMV    RAG L +A E++ +M  
Sbjct: 458 AVLTACAHTGKVADARKIFNSMQAMFGINPVMEQYACMVSAFSRAGMLNDALELVNSMPF 517

Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           EP+  VWG LL       N+EL       L ++EP++  N +++ +LY+NAG
Sbjct: 518 EPNAMVWGPLLNGAAEFCNVELGRFVFDQLFKIEPKNTGNYIVMANLYSNAG 569



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 131/312 (41%), Gaps = 37/312 (11%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +A+  G  +H     +GL     +    + FY +C  + +AR LFD + K +   +  + 
Sbjct: 234 KAVDFGVRVHRLAAENGLDSDIAVWNSAVGFYAKCGRLKYARELFDGMAKKDAVSYSTMI 293

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD--------IGTG----- 198
             Y   G+    + +F    +QG+     VI  +++  G  SD        IG+G     
Sbjct: 294 AGYMNHGHVDMGLELFQRADVQGISIWNAVIAGLIQH-GRQSDVLGLLNEMIGSGMLPNS 352

Query: 199 -------------------EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239
                              ++ H   +++++     VV++LID YSK G ++ +++VF  
Sbjct: 353 ATLSILIPSVHLFSTLLGVKQAHGYAIRNNYDQSIGVVTALIDAYSKAGFLDGSRRVFKL 412

Query: 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299
             ++  +   +++S     G A EAL+L  E+    ++ + + +  +++  + +G     
Sbjct: 413 TDDRSEIVWTSIISAVAAHGEAAEALHLFNEMVNAGIRLDTIAFTAVLTACAHTGKVADA 472

Query: 300 SKLFQLMRAK-GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
            K+F  M+A  G+ P +  +  ++S        ++A +    M    F P +     +L 
Sbjct: 473 RKIFNSMQAMFGINPVMEQYACMVSAFSRAGMLNDALELVNSM---PFEPNAMVWGPLLN 529

Query: 359 ACASAANMRRGK 370
             A   N+  G+
Sbjct: 530 GAAEFCNVELGR 541


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 175/565 (30%), Positives = 282/565 (49%), Gaps = 93/565 (16%)

Query: 92  RALQSGKILHAQLIVSG-LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIAL 150
           R+L++   +HA L++SG +A       KL+  Y++   + +A  LFDE P+ N   W AL
Sbjct: 14  RSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTAL 73

Query: 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
              +     ++ A   F +MH + +    F I SVLKA   L  I  G+ ++ L ++  +
Sbjct: 74  IHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGY 133

Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVS----------------- 253
             D  V + +I+++ +CG +  A+++FDEM E+D V+ N+M++                 
Sbjct: 134 EFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDR 193

Query: 254 --------------GYVQRGLATEAL-------------------------NLVEEIGTP 274
                         GYV+ G   EA                          NLV      
Sbjct: 194 MEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLF 253

Query: 275 RVKP--NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--------------------- 311
            + P  +V TWN +ISG  K+G+     + F  M+ + V                     
Sbjct: 254 ELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARS 313

Query: 312 ------EPDVVSWTSVISGLV---HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362
                 E ++V+W+++I G     H + + + + TFKE   QG  P       I+ AC+ 
Sbjct: 314 VFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKE---QGIKPDETFALGIISACSQ 370

Query: 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSM 422
                  + +    +   +  +L V ++L+DMYAKCG I  A  +F+ + +++   ++++
Sbjct: 371 LGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTV 430

Query: 423 IFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481
           I   ANHG  ++AI LF++M++   K D ++F  VLTAC H GLV  G+RLF  M ++Y 
Sbjct: 431 ITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYG 490

Query: 482 IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541
           I P  +HYACMVD+LGRAG L EA+ +I +M   P+  VWGALL AC+ H N++LAE AA
Sbjct: 491 IQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAAA 550

Query: 542 KHLSELEPESAANNMLLTDLYANAG 566
             L ++EP ++ N +LL ++YA+AG
Sbjct: 551 TELFQIEPNNSGNYVLLFNIYADAG 575



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
           Q+ T LI  Y +C NI  A  +F+ + + ++H +  +  A+A  G  ++A+++F EM   
Sbjct: 394 QVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKA 453

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKI-HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
            +K +      VL AC H   +G G ++   ++ ++         + ++D+  + G +E+
Sbjct: 454 NIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEE 513

Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATE-ALNLVEEIGTP--RVKPNVV-TWNTLIS 288
           A  +   M     VA NA V G +         + L E   T   +++PN    +  L +
Sbjct: 514 AHSLICSMP----VAPNATVWGALLSACRVHLNVQLAEAAATELFQIEPNNSGNYVLLFN 569

Query: 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
            ++ +G     SK+  ++R   V  +  S    +  ++H F
Sbjct: 570 IYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSVIHEF 610


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 252/475 (53%), Gaps = 47/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA ++   L++   + TK++       ++ +A +LF ++   NI  + A+   YA  
Sbjct: 27  KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHN 86

Query: 158 GYHQEAVTVFHEM---HIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDA 214
            +H  A++VF +M       +  + F  P V+K+C  +     G ++H LV K  FG D 
Sbjct: 87  RHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYK--FGADF 144

Query: 215 FVVS--SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
             ++  +LIDMY+K G +                               T A  + EE+ 
Sbjct: 145 HCITENALIDMYTKFGDL-------------------------------TNACKVFEEMS 173

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                 +V++WN+LI G+ K G      +LF  M  +     +VSWT++I+G     C  
Sbjct: 174 ----HRDVISWNSLIFGYVKLGQMNSARELFDDMPVR----TIVSWTTMITGYGRMGCYG 225

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +A D F+EM   G  P   +I ++LPACA    +  GK IH  A   G      + +AL+
Sbjct: 226 DALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALI 285

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHL 451
           +MYAKCG I EA  LFD++ E++ ++W++MI G ANHG   EAI+LF +M + R   + +
Sbjct: 286 EMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEI 345

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  VL AC H GL + G + F++M   Y I P  EHY C++DLLGR+G L +A + I  
Sbjct: 346 TFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISK 405

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  +PD  +W +LL +C+ H N+++A IA K L ELEPE + N +LL ++YA  G
Sbjct: 406 MPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHG 460



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 112/254 (44%), Gaps = 11/254 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H     +G  R T I   LI  Y +C  I  A  LFD++ + ++  W  + G
Sbjct: 258 ALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIG 317

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G   EA+ +F EM    +  N      VL AC H      G K    V+  S+  
Sbjct: 318 GLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFD-VMSASYHI 376

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSG-YVQRGL--ATEALN 266
           +  +     LID+  + G + +A     +M ++ D    N+++S   + R L  A  A+ 
Sbjct: 377 EPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVK 436

Query: 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
            + E+  P    N V    L + +++ G    VS + +L+R K ++    S +  ++ +V
Sbjct: 437 QLMEL-EPEESGNYV---LLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVV 492

Query: 327 HNFCNDEAFDTFKE 340
             F + +    F +
Sbjct: 493 QEFVSSDDSKPFSQ 506


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 230/437 (52%), Gaps = 42/437 (9%)

Query: 132 ARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG--LKQNIFVIPSVLKAC 189
           AR LFD  P  ++  W  L G Y RRG   EA+ +F  M  +   ++ +   + + +  C
Sbjct: 179 ARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGC 238

Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
           G + D+  G ++H  V          ++++L+DMY KCGS+E AK VF+ +  +      
Sbjct: 239 GQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHR------ 292

Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
                                         VV+W T+I GF+K G      K+F  M   
Sbjct: 293 -----------------------------TVVSWTTMIVGFAKFGLMDDARKVFDEMP-- 321

Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
             E DV  W ++++G V      EA   F EM      P   T+ ++L AC+    +  G
Sbjct: 322 --ERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMG 379

Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH 429
             +H       +   + + ++L+DMYAKCG I +A  +F ++ E+N +TW +MI G ANH
Sbjct: 380 MWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANH 439

Query: 430 GYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488
           G+ +EAIE F  M E  +K D ++F  VL+ACCH GLV+ G+  F++M+ KY +  + +H
Sbjct: 440 GHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKH 499

Query: 489 YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548
           Y+CM+DLLGRAG L EA +++ TM  EPD  VWGA+  AC+  GNI L E AA  L E++
Sbjct: 500 YSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEID 559

Query: 549 PESAANNMLLTDLYANA 565
           P  +   +LL ++YA A
Sbjct: 560 PSDSGIYVLLANMYAEA 576



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 150/323 (46%), Gaps = 6/323 (1%)

Query: 84  RIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKT 142
           R+   + D  ++ G +  A+ +   +   T ++ T +I  + +   +  AR +FDE+P+ 
Sbjct: 264 RLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPER 323

Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
           ++  W AL   Y +    +EA+++FHEM    +  +   + ++L AC  L  +  G  +H
Sbjct: 324 DVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVH 383

Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
             + KH       + +SLIDMY+KCG++EKA  +F E+ EK+ +   AM+ G    G A 
Sbjct: 384 RYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHAN 443

Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSV 321
           EA+     +     KP+ +T+  ++S    +G      + F LM  K  +E  +  ++ +
Sbjct: 444 EAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCM 503

Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
           I  L      DEA      M  +   P +    +I  AC    N+  G++     +V   
Sbjct: 504 IDLLGRAGHLDEAEQLVNTMPME---PDAVVWGAIFFACRMQGNISLGEKA-AMKLVEID 559

Query: 382 EGDLHVRSALVDMYAKCGFISEA 404
             D  +   L +MYA+     +A
Sbjct: 560 PSDSGIYVLLANMYAEANMRKKA 582


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 155/474 (32%), Positives = 242/474 (51%), Gaps = 51/474 (10%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159
           +HA L+  GL     +  KL   Y    ++HH+  LF   P  N+  W  +  A+A    
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101

Query: 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219
              A++ + +M    ++ N F + S+LKAC     +     +HS  +K    +  +V + 
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKAC----TLHPARAVHSHAIKFGLSSHLYVSTG 157

Query: 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279
           L+D Y++ G V  A+K+FD M E+ +V+  AM++ Y + G+  EA  L E +G       
Sbjct: 158 LVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMK----- 212

Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339
                                             DVV W  +I G   + C +EA   F+
Sbjct: 213 ----------------------------------DVVCWNVMIDGYAQHGCPNEALVFFR 238

Query: 340 EMLSQGFC-------PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +M+            P   T+ ++L +C     +  GK +H      G++ ++ V +ALV
Sbjct: 239 KMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALV 298

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHL 451
           DMY KCG + +AR +FD M  ++ V WNSMI G   HG+ DEA++LF++M     K   +
Sbjct: 299 DMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDI 358

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F AVLTAC H GLV  G  +F+ M++ Y + P+ EHY CMV+LLGRAGR+ EAY+++++
Sbjct: 359 TFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRS 418

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
           M  EPD  +WG LL AC+ H N+ L E  A+ L      S+   +LL+++YA A
Sbjct: 419 MEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAA 472



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 163/352 (46%), Gaps = 59/352 (16%)

Query: 74  FHLSPAAYSERIEIYIRDRA-----------LQSGKILHAQLIVSGLARLTQIATKLITF 122
           FH + + YS+ +   I+  A           L   + +H+  I  GL+    ++T L+  
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDA 161

Query: 123 YTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG-------- 174
           Y    ++  A+ LFD +P+ ++  + A+   YA+ G   EA  +F  M ++         
Sbjct: 162 YARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMI 221

Query: 175 ------------------------------LKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204
                                         ++ N   + +VL +CG +  +  G+ +HS 
Sbjct: 222 DGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSY 281

Query: 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264
           V  +    +  V ++L+DMY KCGS+E A+KVFD M  KD+VA N+M+ GY   G + EA
Sbjct: 282 VENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEA 341

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK---LFQLMR-AKGVEPDVVSWTS 320
           L L  E+    VKP+ +T+  +++  + +G   +VSK   +F  M+   G+EP V  +  
Sbjct: 342 LQLFHEMCCIGVKPSDITFVAVLTACAHAG---LVSKGWEVFDSMKDGYGMEPKVEHYGC 398

Query: 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
           +++ L       EA+D  + M  +   P      ++L AC   +N+  G+EI
Sbjct: 399 MVNLLGRAGRMQEAYDLVRSMEVE---PDPVLWGTLLWACRIHSNVSLGEEI 447



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 11/243 (4%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H+ +  +G+    ++ T L+  Y +C ++  AR +FD +   ++  W ++  
Sbjct: 271 ALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIM 330

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
            Y   G+  EA+ +FHEM   G+K +     +VL AC H   +  G ++    +K  +G 
Sbjct: 331 GYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFD-SMKDGYGM 389

Query: 213 DAFV--VSSLIDMYSKCGSVEKAKKVFDEM-VEKDIVAMNAMVSGYVQRGLATEALNLVE 269
           +  V     ++++  + G +++A  +   M VE D V    ++  +  R      ++L E
Sbjct: 390 EPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLL--WACR--IHSNVSLGE 445

Query: 270 EIGTPRVKPNVVTWNTLI---SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326
           EI    V   + +  T +   + ++ + + V V+K+  +M+  GVE +    +  +   V
Sbjct: 446 EIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRV 505

Query: 327 HNF 329
           H F
Sbjct: 506 HEF 508


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 157/511 (30%), Positives = 259/511 (50%), Gaps = 45/511 (8%)

Query: 92  RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
           +AL+ G+ LH  LI++G      + T L+  Y +C ++  A+ +F+ +   ++  W ++ 
Sbjct: 24  QALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSII 83

Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
            AYAR G  + AV ++  M  +G++ N+      L  C  ++ +  G  IH  +L     
Sbjct: 84  SAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVP 143

Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL---- 267
            D  +  SL++MY KC  + +A+KVF+ M  +++ +  AM+S YVQ G   EAL L    
Sbjct: 144 QDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRM 203

Query: 268 -------------------VEEIG-------------TPRVKPNVVTWNTLISGFSKSGD 295
                              VE +G             +     NVV  N L++ + K G 
Sbjct: 204 SKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGS 263

Query: 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355
            V   K+F  M A+    +V+SWTS+I+    +    EA + FK M  +   P+  + SS
Sbjct: 264 PVEARKVFDSMTAR----NVISWTSMIAAYAQHGNPQEALNLFKRMDVE---PSGVSFSS 316

Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
            L ACA    +  G+EIH   +V        + ++L+ MYA+CG + +AR +F++M  R+
Sbjct: 317 ALNACALLGALDEGREIHH-RVVEAHLASPQMETSLLSMYARCGSLDDARRVFNRMKTRD 375

Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
             + N+MI     HG   +A+ ++ +ME+     D ++F +VL AC H  LV   +  F 
Sbjct: 376 AFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQ 435

Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
            +   + ++P  EHY CMVD+LGR+GRL +A E+++TM  + D   W  LL  CK HG++
Sbjct: 436 SLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDL 495

Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
              E AA+ + EL P      + L+++YA A
Sbjct: 496 NRGERAARKVFELAPAETLPYVFLSNMYAAA 526



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 204/404 (50%), Gaps = 45/404 (11%)

Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
           M  +G+  + F++ S++ AC  L  +  G ++H  ++   F TD  + ++L+ MY+KCGS
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW------ 283
           ++ AK+VF+ M  KD+ A ++++S Y + G    A+ L   +    V+PNVVT+      
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 284 -----------------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314
                                        ++L++ + K  + V   K+F+ M+A+ V   
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVR-- 178

Query: 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLS-QGFCPTSATISSILPACASAANMRRGKEIH 373
             S+T++IS  V    + EA + F  M   +   P + T ++IL A     N+ +G+++H
Sbjct: 179 --SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVH 236

Query: 374 GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433
                 G + ++ V++ALV MY KCG   EAR +FD M+ RN ++W SMI   A HG   
Sbjct: 237 RHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQ 296

Query: 434 EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
           EA+ LF +M+   +   +SF++ L AC  +G ++ G+ + + + E +   P+ E    ++
Sbjct: 297 EALNLFKRMD--VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLL 352

Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
            +  R G L +A  +   M T  D F   A++ A   HG  + A
Sbjct: 353 SMYARCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQHGRKKQA 395



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 148/326 (45%), Gaps = 9/326 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +H  L   G      +   L+T Y +C +   AR +FD +   N+  W ++  A
Sbjct: 229 LEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAA 288

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G  QEA+ +F  M ++    +     S L AC  L  +  G +IH  V++    + 
Sbjct: 289 YAQHGNPQEALNLFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASP 345

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
             + +SL+ MY++CGS++ A++VF+ M  +D  + NAM++ + Q G   +AL +   +  
Sbjct: 346 Q-METSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQ 404

Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ-LMRAKGVEPDVVSWTSVISGLVHNFCND 332
             +  + +T+ +++   S +         FQ L+   GV P V  +  ++  L  +    
Sbjct: 405 EGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLG 464

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
           +A +  + M  Q     +    ++L  C    ++ RG+        +     L     L 
Sbjct: 465 DAEELVETMPYQ---TDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPY-VFLS 520

Query: 393 DMYAKCGFISEARTLFDKMSERNTVT 418
           +MYA      +AR +  +M ER   T
Sbjct: 521 NMYAAAKRFDDARRVRKEMEERGVTT 546



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 157/386 (40%), Gaps = 67/386 (17%)

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           D F+V+SL+   +K  ++E+ +++ + ++          ++G+                 
Sbjct: 9   DKFIVTSLVAACTKLQALEEGRRLHEHLI----------ITGF----------------- 41

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
               + ++     L+  ++K G      ++F+ M  K    D+ +W+S+IS        +
Sbjct: 42  ----RTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK----DLFAWSSIISAYARAGRGE 93

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            A   ++ M+++G  P   T +  L  CAS A +  G+ IH   +   V  D  ++ +L+
Sbjct: 94  MAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLL 153

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD--H 450
           +MY KC  + EAR +F+ M  RN  ++ +MI      G   EA+ELF++M + + ++   
Sbjct: 154 NMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNA 213

Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQ-------------------------EKYKIMPR 485
            +F  +L A   +G +E G+++   +                          E  K+   
Sbjct: 214 YTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDS 273

Query: 486 TE-----HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
                   +  M+    + G   EA  + K M  EP    + + L AC   G ++     
Sbjct: 274 MTARNVISWTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREI 333

Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
              + E    S      L  +YA  G
Sbjct: 334 HHRVVEAHLASPQMETSLLSMYARCG 359


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 248/475 (52%), Gaps = 45/475 (9%)

Query: 98  KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
           K +HA ++   L+  + + TK++          +A +LF  +   N   + A+  AY   
Sbjct: 5   KKIHAHVVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYKHN 64

Query: 158 GYHQEAVTVFHEM--HIQGLKQ---NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             +  A+TV  +M  H  G      + F  P V+K C  L     G+++H    K    +
Sbjct: 65  KVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKS 124

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
           +  + +SL++MY KC S++ A +VF+EM E+D                            
Sbjct: 125 NTVIENSLVEMYVKCDSLDDAHRVFEEMTERD---------------------------- 156

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
                   V+WNTLISG  + G       +F+ ++ K     + SWT+++SG     C+ 
Sbjct: 157 -------AVSWNTLISGHVRLGQMRRARAIFEELQDK----TIFSWTAIVSGYARIGCHA 205

Query: 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392
            A + F+ M          ++ S+LPACA    +  GK IH  A   G   D+ V +AL+
Sbjct: 206 VALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALI 265

Query: 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHL 451
           ++YAK G + E R LF KM+ER+ ++W++MI G ANHG   EAIELF +M++ K + + +
Sbjct: 266 EVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNII 325

Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
           +F  +L+AC H GL+  G   F  M+    I P  EHY C+V+LLG +GRL +A E+IK 
Sbjct: 326 TFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKK 385

Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
           M  +PD  +WG L  +C++HGN+E+  IA +HL ELEP+   N + L++LYA+ G
Sbjct: 386 MPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLELEPDDTGNYITLSNLYADLG 440



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 35/302 (11%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNI--------------------------- 129
           GK +H      G    T I   L+  Y +C ++                           
Sbjct: 110 GKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVR 169

Query: 130 ----HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185
                 AR +F+E+    I  W A+   YAR G H  A+  F  M +  ++ +   + SV
Sbjct: 170 LGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSV 229

Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
           L AC  L  +  G+ IH    K  F  D  V ++LI++Y+K GS+++ +++F +M E+D+
Sbjct: 230 LPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDV 289

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           ++ + M+ G    G A EA+ L +E+   +V+PN++T+  L+S  + +G        F+ 
Sbjct: 290 ISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFES 349

Query: 306 M-RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
           M R   +EP V  +  +++ L  +   D+A +  K+M  +   P S     +  +C S  
Sbjct: 350 MERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMK---PDSDIWGLLSSSCRSHG 406

Query: 365 NM 366
           N+
Sbjct: 407 NL 408



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 102/264 (38%), Gaps = 35/264 (13%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL+ GK +H     +G  R   +   LI  Y +  ++   R LF ++ + ++  W  +  
Sbjct: 238 ALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIV 297

Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212
             A  G  +EA+ +F EM    ++ NI     +L AC H   +  G              
Sbjct: 298 GLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEG-------------- 343

Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272
                          G  E  ++  D+ +E  +     +V+     G   +AL L++++ 
Sbjct: 344 --------------LGYFESMER--DDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMP 387

Query: 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332
              +KP+   W  L S     G+  +V+   + +    +EPD       +S L  +    
Sbjct: 388 ---MKPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLE--LEPDDTGNYITLSNLYADLGKW 442

Query: 333 EAFDTFKEMLSQGFCPTSATISSI 356
           +     ++++S  +   +   SSI
Sbjct: 443 DGVSRMRKLMSSKYMNKTPGCSSI 466


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/506 (31%), Positives = 266/506 (52%), Gaps = 47/506 (9%)

Query: 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI-PKTNIHRWIALTGAYARRG 158
           +H Q++V+  + +      L++     +N  ++ +LF  I P  N + +  +  A     
Sbjct: 43  VHTQMVVN--SSIHTPNNHLLSKAIHLKNFPYSSLLFSHIAPHPNDYAFNIMIRALTTTW 100

Query: 159 YHQE-AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217
           ++   A+++FH M    L  + F  P    +C +L+ +      HSL+ K +  +D    
Sbjct: 101 HNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTA 160

Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT-PRV 276
            SLI  Y++CG V  A+KVFDE+  +D V+ N+M++GY + G A EA+ +  E+G     
Sbjct: 161 HSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGF 220

Query: 277 KPNVVT------------------W-----------------NTLISGFSKSGDQVMVSK 301
           +P+ ++                  W                 + LIS ++K G+     +
Sbjct: 221 EPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARR 280

Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
           +F  M A+    DV++W +VISG   N   DEA   F  M          T++++L ACA
Sbjct: 281 IFDGMAAR----DVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACA 336

Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
           +   +  GK+I   A   G + D+ V +AL+DMYAK G +  A+ +F  M ++N  +WN+
Sbjct: 337 TIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNA 396

Query: 422 MIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478
           MI   A HG   EA+ LF  M +     + + ++F  +L+AC H GLV+ G RLF+MM  
Sbjct: 397 MISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMST 456

Query: 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538
            + ++P+ EHY+CMVDLL RAG L EA+++I+ M  +PD    GALLGAC++  N+++ E
Sbjct: 457 LFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGE 516

Query: 539 IAAKHLSELEPESAANNMLLTDLYAN 564
              + + E++P ++ N ++ + +YAN
Sbjct: 517 RVMRMILEVDPSNSGNYIISSKIYAN 542



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 145/282 (51%), Gaps = 6/282 (2%)

Query: 94  LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
           L+ G+ +   ++  G+   + I + LI+ Y +C  +  AR +FD +   ++  W A+   
Sbjct: 240 LELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISG 299

Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
           YA+ G   EA+ +FH M    +  N   + +VL AC  +  +  G++I     +  F  D
Sbjct: 300 YAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHD 359

Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
            FV ++LIDMY+K GS++ A++VF +M +K+  + NAM+S     G A EAL+L + +  
Sbjct: 360 IFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSD 419

Query: 274 P--RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEPDVVSWTSVISGLVHNFC 330
                +PN +T+  L+S    +G      +LF +M    G+ P +  ++ ++  L     
Sbjct: 420 EGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGH 479

Query: 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372
             EA+D  ++M  +   P   T+ ++L AC S  N+  G+ +
Sbjct: 480 LYEAWDLIRKMPEK---PDKVTLGALLGACRSKKNVDIGERV 518



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 26/274 (9%)

Query: 93  ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
           AL  GK +       G      +AT LI  Y +  ++ +A+ +F ++P+ N   W A+  
Sbjct: 340 ALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMIS 399

Query: 153 AYARRGYHQEAVTVFHEMHIQ--GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
           A A  G  +EA+++F  M  +  G + N      +L AC H   +  G ++  + +   F
Sbjct: 400 ALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDM-MSTLF 458

Query: 211 GTDAFV--VSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQR---GLATEA 264
           G    +   S ++D+ ++ G + +A  +  +M EK D V + A++     +    +    
Sbjct: 459 GLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERV 518

Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPDVVSWTSVIS 323
           + ++ E+  P    N +  + + +  +   D    +++  LMR KG+ +    SW  V +
Sbjct: 519 MRMILEV-DPSNSGNYIISSKIYANLNMWEDS---ARMRLLMRQKGITKTPGCSWIEVEN 574

Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
            L H F               G C  S  +S+I+
Sbjct: 575 HL-HEF-----------HAGDGLCLDSIDLSNII 596


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 240/473 (50%), Gaps = 53/473 (11%)

Query: 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF--VIPSVLKACGHLSDIGTGEKIHSL 204
           W     A A  G+  +AV++F  M      ++     +P+ LK+C  L     G  +H+L
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 205 VLKHSFGTDAFVVSSLIDMYSK--CG-----------------SVEKAKKVFDEMVEKDI 245
            ++     D F  ++L+++Y K  C                  + E  +KVFDEM+E+D+
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
           V+ N +V G  + G   EAL  V ++     +P+  T +T++  F++  D     ++   
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 306 MRAKGVEPDV-------------------------------VSWTSVISGLVHNFCNDEA 334
               G + DV                               + W S+++G   N   +EA
Sbjct: 196 AFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEA 255

Query: 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394
              F+ ML  G  P   T SS++P C + A++R GK++H   I  G E ++ + S+L+DM
Sbjct: 256 LGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDM 315

Query: 395 YAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDHLSF 453
           Y KCG IS A  +FDKMS  + V+W +MI G A HG   EA+ LF +ME    K +H++F
Sbjct: 316 YCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITF 375

Query: 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513
            AVLTAC H GLV+ G + F  M   Y I+P  EH+A + D LGRAG L EAY  I  M 
Sbjct: 376 LAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQ 435

Query: 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
            +P   VW  LL AC+ H N  LAE  AK + ELEP S  ++++L+++Y+ +G
Sbjct: 436 IKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASG 488



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 186/402 (46%), Gaps = 21/402 (5%)

Query: 20  SMNDFYSIRRIYFALL-----SGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSF 74
           S   F S+R+++  ++     S   LVL C++     G+      F+    +      SF
Sbjct: 116 SSTAFESVRKVFDEMIERDVVSWNTLVLGCAEE----GRHHEALGFVRKMCREGFRPDSF 171

Query: 75  HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARM 134
            LS       + I+     ++ G  +H     +G      + + LI  Y  C    ++  
Sbjct: 172 TLSTV-----LPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVK 226

Query: 135 LFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194
           +FD +P  +   W +L    A+ G  +EA+ +F  M   G++       S++  CG+L+ 
Sbjct: 227 VFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLAS 286

Query: 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254
           +  G+++H+ V+   F  + F+ SSLIDMY KCG +  A  +FD+M   D+V+  AM+ G
Sbjct: 287 LRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMG 346

Query: 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-GVEP 313
           Y   G A EAL L E +     KPN +T+  +++  S +G      K F+ M    G+ P
Sbjct: 347 YALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVP 406

Query: 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIH 373
            +  + ++   L      DEA++   +M  +   PT++  S++L AC    N    +E+ 
Sbjct: 407 TLEHFAALADTLGRAGELDEAYNFISKMQIK---PTASVWSTLLRACRVHKNTMLAEEV- 462

Query: 374 GCAIVMGVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSER 414
               +M +E   +     L +MY+  G  +EA  L + M ++
Sbjct: 463 -AKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKK 503


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 158/507 (31%), Positives = 261/507 (51%), Gaps = 37/507 (7%)

Query: 97  GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
           G  L +  + SGL      A+ L+  Y +C  +  AR +FD +P  N   W AL   YA 
Sbjct: 114 GAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAE 173

Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
                +A+ +F EM    L  +     ++L      S     +++H  + K+       V
Sbjct: 174 SRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVV 233

Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNL-VEEIGTPR 275
           +++ I  YS+CG+   ++++FD +  +D+++ N+M+  Y   G+  EA+   V  +    
Sbjct: 234 LNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESG 293

Query: 276 VKPNVVTWNTLISGFSKSG-DQVMVSKLFQLMRAKGVE---------------------- 312
           V+P++ ++ +++S  S+ G D      +  L+   G+E                      
Sbjct: 294 VQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMM 353

Query: 313 ------------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
                        D VSW S+++G  H+  + +A   F+ M ++        +S+ L +C
Sbjct: 354 EDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSC 413

Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
           +  A +R G+++H   I  G   +  V S+L+ MY+KCG + +AR  F++  + ++V WN
Sbjct: 414 SDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWN 473

Query: 421 SMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
           SM+FG A HG      +LF++M + K  LDH++F A+LTA  H GLV+ G  + N M+ +
Sbjct: 474 SMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETR 533

Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
           YKI  R EHYAC VDL GRAG+L +A E+I++M  +PD  VW  LLGAC+ HGN+ELA  
Sbjct: 534 YKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASD 593

Query: 540 AAKHLSELEPESAANNMLLTDLYANAG 566
            A HL   EP   +  +LL+ +Y+  G
Sbjct: 594 VASHLFVAEPRQHSTYVLLSSMYSGRG 620



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 199/405 (49%), Gaps = 50/405 (12%)

Query: 117 TKLITFYTEC---QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQ 173
            +L+T Y+       +  AR +FDEIP+ +   W +L  A+   G H++A  +  +MH +
Sbjct: 30  NQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHAR 89

Query: 174 GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233
           GL  + F + S L++         G ++ S  +K     + F  S+L+D+Y+KCG +  A
Sbjct: 90  GLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDA 149

Query: 234 KKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT----------- 282
           ++VFD M  ++ V+ NA+++GY +     +A+ L  E+    + P+  T           
Sbjct: 150 RRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGP 209

Query: 283 -W-----------------------NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318
            W                       N  I+ +S+ G      ++F  ++++    D++SW
Sbjct: 210 SWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSR----DLISW 265

Query: 319 TSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACAS-AANMRRGKEIHGCA 376
            S++    ++  +DEA   F  M+ + G  P   + +S++  C+    + R+G+ IH   
Sbjct: 266 NSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLV 325

Query: 377 IVMGVEGDLHVRSALVDMYAK----CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYC 432
           + +G+EG  HV +A++ MY +    C  + +A   FD +  ++ V+WNSM+ G ++HG  
Sbjct: 326 VKIGLEGVTHVCNAMIAMYTRFTENC-MMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLS 384

Query: 433 DEAIELFNQME-ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
            +A+  F  M  E    D  + +A L +C  + ++ LG+++ +++
Sbjct: 385 SDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLV 429



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 134/257 (52%), Gaps = 16/257 (6%)

Query: 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342
           WN L++ +S SG    ++   ++   +   PD VSW S+++  V    + +A+   K+M 
Sbjct: 29  WNQLLTAYSASGPGSGLAAARRVFD-EIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMH 87

Query: 343 SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402
           ++G   ++  + S L + A+A     G ++   A+  G+  ++   SAL+D+YAKCG +S
Sbjct: 88  ARGLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLS 147

Query: 403 EARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTACC 461
           +AR +FD M  RNTV+WN++I G A      +A+ELF +M+  + + D  +F A+L    
Sbjct: 148 DARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLAT-- 205

Query: 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL------LGRAGRLAEAYEMIKTMSTE 515
               VE G   +++MQ+ +  + +      +V L        + G  A++  +   + + 
Sbjct: 206 ----VE-GPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSR 260

Query: 516 PDLFVWGALLGACKNHG 532
            DL  W ++LGA   HG
Sbjct: 261 -DLISWNSMLGAYAYHG 276


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,258,395,823
Number of Sequences: 23463169
Number of extensions: 323041267
Number of successful extensions: 986289
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10950
Number of HSP's successfully gapped in prelim test: 1508
Number of HSP's that attempted gapping in prelim test: 767305
Number of HSP's gapped (non-prelim): 65554
length of query: 566
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 418
effective length of database: 8,886,646,355
effective search space: 3714618176390
effective search space used: 3714618176390
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)