Query 036165
Match_columns 566
No_of_seqs 660 out of 3058
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 10:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.1E-73 4.5E-78 610.7 56.3 492 73-566 182-705 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.5E-68 7.7E-73 570.3 57.8 490 73-566 81-603 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.4E-65 5.3E-70 537.5 61.1 486 76-562 368-892 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 1.7E-63 3.6E-68 521.8 48.0 448 111-566 85-542 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.7E-62 3.8E-67 516.0 55.0 467 75-548 403-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-61 3E-66 507.3 49.7 432 73-513 118-555 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.9E-31 1.9E-35 287.8 59.0 482 75-566 360-885 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-30 4.1E-35 285.3 59.2 480 77-566 328-818 (899)
9 PRK11447 cellulose synthase su 100.0 1.4E-22 3E-27 223.6 58.2 484 74-565 58-650 (1157)
10 PRK11447 cellulose synthase su 100.0 1E-22 2.2E-27 224.6 56.5 470 85-566 119-725 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 5.9E-23 1.3E-27 192.5 31.5 434 80-560 50-498 (966)
12 PRK09782 bacteriophage N4 rece 99.9 3.8E-20 8.2E-25 195.2 53.3 475 75-566 75-691 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.9E-21 6.3E-26 181.3 33.8 392 87-526 91-498 (966)
14 PRK09782 bacteriophage N4 rece 99.9 1.1E-18 2.3E-23 184.4 51.8 462 88-566 54-657 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.6E-19 1E-23 183.9 47.7 399 147-553 130-577 (615)
16 KOG2002 TPR-containing nuclear 99.9 3.4E-19 7.3E-24 176.2 41.7 463 92-564 250-762 (1018)
17 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.5E-24 179.1 34.6 298 151-487 42-354 (389)
18 PRK11788 tetratricopeptide rep 99.9 1.4E-19 3E-24 178.4 35.0 286 256-546 46-346 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-18 4.5E-23 179.0 45.2 379 182-566 130-556 (615)
20 PRK10049 pgaA outer membrane p 99.9 2.6E-18 5.6E-23 181.5 45.5 407 111-556 13-465 (765)
21 PRK15174 Vi polysaccharide exp 99.9 4.4E-18 9.6E-23 175.9 42.8 350 124-513 16-379 (656)
22 PRK15174 Vi polysaccharide exp 99.9 1.1E-17 2.4E-22 173.0 45.0 352 88-445 15-381 (656)
23 PRK10049 pgaA outer membrane p 99.9 5.3E-17 1.1E-21 171.6 48.5 426 73-527 10-469 (765)
24 PRK14574 hmsH outer membrane p 99.9 1.1E-16 2.4E-21 165.9 48.2 455 74-556 30-522 (822)
25 KOG2002 TPR-containing nuclear 99.8 8.9E-17 1.9E-21 159.4 40.4 420 142-566 268-730 (1018)
26 KOG2003 TPR repeat-containing 99.8 7.4E-18 1.6E-22 153.0 28.6 483 78-566 162-708 (840)
27 PRK14574 hmsH outer membrane p 99.8 4.4E-15 9.4E-20 154.1 51.1 428 74-526 64-525 (822)
28 KOG0495 HAT repeat protein [RN 99.8 1.9E-13 4.1E-18 130.2 48.1 464 89-566 387-865 (913)
29 KOG4422 Uncharacterized conser 99.8 2.3E-14 4.9E-19 129.8 39.3 413 80-513 118-588 (625)
30 KOG2076 RNA polymerase III tra 99.8 7E-14 1.5E-18 138.2 45.5 469 90-562 151-784 (895)
31 KOG4422 Uncharacterized conser 99.8 7.4E-15 1.6E-19 132.9 34.4 337 144-498 116-480 (625)
32 KOG0495 HAT repeat protein [RN 99.7 1E-12 2.2E-17 125.4 45.8 463 83-559 411-892 (913)
33 KOG1915 Cell cycle control pro 99.7 5.9E-13 1.3E-17 122.3 40.4 447 91-546 86-584 (677)
34 KOG1173 Anaphase-promoting com 99.7 4E-13 8.7E-18 126.3 36.4 479 76-563 14-534 (611)
35 KOG1915 Cell cycle control pro 99.7 2.3E-11 5E-16 112.0 42.5 440 112-561 72-549 (677)
36 KOG2076 RNA polymerase III tra 99.7 4E-12 8.6E-17 126.1 40.2 422 123-547 149-695 (895)
37 PF13429 TPR_15: Tetratricopep 99.7 6.9E-16 1.5E-20 144.0 12.6 256 285-546 13-276 (280)
38 PRK10747 putative protoheme IX 99.6 5.6E-13 1.2E-17 130.2 31.8 256 256-547 129-390 (398)
39 PRK10747 putative protoheme IX 99.6 1.8E-12 3.9E-17 126.6 34.9 232 326-566 129-375 (398)
40 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.8E-20 142.2 11.7 242 320-566 13-262 (280)
41 KOG2003 TPR repeat-containing 99.6 1.7E-12 3.8E-17 118.5 30.5 447 79-533 202-709 (840)
42 TIGR00540 hemY_coli hemY prote 99.6 1.4E-12 3E-17 128.2 31.5 222 322-546 160-398 (409)
43 KOG1155 Anaphase-promoting com 99.6 5.2E-11 1.1E-15 109.5 38.7 373 177-562 162-551 (559)
44 TIGR00540 hemY_coli hemY prote 99.6 5.1E-12 1.1E-16 124.2 35.2 288 224-513 94-397 (409)
45 KOG0547 Translocase of outer m 99.6 2E-12 4.3E-17 119.4 29.5 382 147-547 118-566 (606)
46 KOG1155 Anaphase-promoting com 99.6 6.5E-12 1.4E-16 115.4 31.5 344 210-564 160-519 (559)
47 KOG1126 DNA-binding cell divis 99.6 2.1E-13 4.6E-18 130.8 20.7 283 260-551 334-624 (638)
48 KOG1126 DNA-binding cell divis 99.5 1.6E-12 3.4E-17 125.0 22.5 190 314-511 420-616 (638)
49 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4.1E-15 104.3 33.9 281 258-546 97-389 (400)
50 COG3071 HemY Uncharacterized e 99.5 6.6E-11 1.4E-15 107.2 30.9 282 157-445 97-390 (400)
51 COG2956 Predicted N-acetylgluc 99.5 8.4E-11 1.8E-15 103.3 28.5 284 258-546 48-346 (389)
52 KOG0547 Translocase of outer m 99.5 6.6E-11 1.4E-15 109.6 29.3 217 290-513 336-564 (606)
53 COG2956 Predicted N-acetylgluc 99.5 9.6E-11 2.1E-15 102.9 28.2 289 157-479 48-347 (389)
54 KOG1173 Anaphase-promoting com 99.5 1.2E-10 2.6E-15 109.9 30.9 414 144-566 16-503 (611)
55 KOG4318 Bicoid mRNA stability 99.5 3.3E-10 7.2E-15 112.2 35.1 441 73-546 20-556 (1088)
56 KOG3785 Uncharacterized conser 99.5 1.3E-09 2.7E-14 97.1 33.9 442 85-550 29-493 (557)
57 KOG2376 Signal recognition par 99.5 7.6E-09 1.7E-13 98.5 39.9 446 80-564 14-504 (652)
58 KOG2047 mRNA splicing factor [ 99.5 1.3E-08 2.7E-13 97.8 41.5 426 81-513 105-613 (835)
59 KOG4162 Predicted calmodulin-b 99.5 1.6E-09 3.4E-14 106.2 35.5 435 108-553 318-789 (799)
60 KOG2047 mRNA splicing factor [ 99.4 3E-08 6.5E-13 95.4 43.0 482 23-533 100-709 (835)
61 KOG1174 Anaphase-promoting com 99.4 1.2E-08 2.7E-13 92.8 37.1 299 254-559 205-512 (564)
62 KOG1129 TPR repeat-containing 99.4 1.2E-11 2.6E-16 108.6 15.7 240 319-562 227-473 (478)
63 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.5E-15 106.0 22.1 199 348-549 29-234 (234)
64 TIGR02521 type_IV_pilW type IV 99.4 3.1E-10 6.6E-15 103.2 24.7 197 313-513 29-230 (234)
65 KOG1840 Kinesin light chain [C 99.4 6.2E-10 1.3E-14 108.4 26.4 235 281-545 200-477 (508)
66 PRK12370 invasion protein regu 99.4 2.6E-10 5.7E-15 116.5 24.6 242 295-548 276-536 (553)
67 KOG4318 Bicoid mRNA stability 99.4 2.4E-09 5.2E-14 106.3 29.8 268 100-400 12-286 (1088)
68 KOG4162 Predicted calmodulin-b 99.3 7.9E-08 1.7E-12 94.6 38.4 406 143-566 322-768 (799)
69 KOG3785 Uncharacterized conser 99.3 4.8E-08 1.1E-12 87.2 32.2 427 120-565 29-474 (557)
70 PF12569 NARP1: NMDA receptor- 99.3 3.3E-08 7.1E-13 97.7 33.9 286 152-445 12-334 (517)
71 PRK12370 invasion protein regu 99.3 6.1E-10 1.3E-14 113.8 22.4 234 314-554 255-512 (553)
72 PF13041 PPR_2: PPR repeat fam 99.3 1.6E-11 3.5E-16 80.1 6.5 50 243-292 1-50 (50)
73 KOG1129 TPR repeat-containing 99.3 4.9E-10 1.1E-14 98.6 17.2 227 249-513 227-456 (478)
74 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3.1E-16 80.4 6.0 50 142-191 1-50 (50)
75 KOG1840 Kinesin light chain [C 99.3 9.1E-09 2E-13 100.4 27.8 232 216-477 201-477 (508)
76 PRK11189 lipoprotein NlpI; Pro 99.2 8.4E-09 1.8E-13 96.5 26.1 226 329-561 40-280 (296)
77 COG3063 PilF Tfp pilus assembl 99.2 1.1E-08 2.4E-13 86.2 22.5 200 355-557 40-246 (250)
78 KOG1174 Anaphase-promoting com 99.2 3.5E-07 7.6E-12 83.6 32.2 284 276-565 190-484 (564)
79 PF12569 NARP1: NMDA receptor- 99.2 2.3E-07 5.1E-12 91.8 33.2 251 188-445 13-291 (517)
80 KOG1156 N-terminal acetyltrans 99.2 4.9E-06 1.1E-10 80.8 40.1 450 81-545 11-509 (700)
81 PF04733 Coatomer_E: Coatomer 99.1 3.8E-09 8.2E-14 97.2 18.1 226 319-554 39-272 (290)
82 COG3063 PilF Tfp pilus assembl 99.1 3.7E-08 8.1E-13 83.0 21.4 200 318-521 38-243 (250)
83 KOG0985 Vesicle coat protein c 99.1 1.1E-06 2.3E-11 89.1 34.6 429 82-564 842-1325(1666)
84 KOG1156 N-terminal acetyltrans 99.1 1.1E-06 2.4E-11 85.1 32.6 73 483-555 366-442 (700)
85 KOG0624 dsRNA-activated protei 99.1 5.6E-07 1.2E-11 80.3 28.1 312 217-556 41-379 (504)
86 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-08 3.1E-13 94.9 19.5 198 364-566 40-250 (296)
87 KOG3617 WD40 and TPR repeat-co 99.1 8E-07 1.7E-11 88.1 31.6 223 87-342 737-994 (1416)
88 KOG0985 Vesicle coat protein c 99.1 1.5E-05 3.3E-10 81.1 40.9 118 415-544 1103-1220(1666)
89 KOG4340 Uncharacterized conser 99.1 1.5E-07 3.3E-12 82.2 23.4 286 119-412 16-337 (459)
90 KOG0548 Molecular co-chaperone 99.1 7.7E-07 1.7E-11 84.4 29.9 398 151-564 9-472 (539)
91 KOG2376 Signal recognition par 99.0 1.1E-05 2.5E-10 77.5 36.0 417 74-513 42-518 (652)
92 cd05804 StaR_like StaR_like; a 99.0 4.7E-06 1E-10 81.1 33.0 191 355-547 119-336 (355)
93 KOG4340 Uncharacterized conser 99.0 2.3E-06 5.1E-11 75.0 26.2 310 147-475 13-335 (459)
94 PRK04841 transcriptional regul 98.9 0.00013 2.8E-09 80.7 46.4 328 223-551 383-764 (903)
95 KOG1127 TPR repeat-containing 98.9 3.7E-06 8.1E-11 85.4 30.4 120 356-476 856-993 (1238)
96 KOG3616 Selective LIM binding 98.9 2.1E-05 4.5E-10 77.5 34.0 345 118-512 562-934 (1636)
97 KOG3616 Selective LIM binding 98.9 9.2E-06 2E-10 79.9 31.5 360 127-541 545-931 (1636)
98 KOG3617 WD40 and TPR repeat-co 98.9 8.4E-06 1.8E-10 81.2 31.1 444 78-551 757-1363(1416)
99 PRK10370 formate-dependent nit 98.9 3.3E-07 7E-12 79.8 19.4 161 391-561 22-187 (198)
100 PRK04841 transcriptional regul 98.9 2.9E-05 6.3E-10 85.8 39.6 359 121-479 349-760 (903)
101 cd05804 StaR_like StaR_like; a 98.9 1.1E-05 2.3E-10 78.6 31.8 254 254-513 52-334 (355)
102 PF04733 Coatomer_E: Coatomer 98.9 2E-07 4.4E-12 85.9 17.9 120 218-343 39-159 (290)
103 KOG1127 TPR repeat-containing 98.9 2.4E-05 5.3E-10 79.7 32.9 461 84-565 465-980 (1238)
104 PRK15359 type III secretion sy 98.8 1E-07 2.2E-12 78.4 13.9 123 437-564 14-138 (144)
105 KOG0548 Molecular co-chaperone 98.8 1.5E-05 3.3E-10 75.9 28.9 400 88-513 12-453 (539)
106 KOG0624 dsRNA-activated protei 98.8 3.5E-05 7.6E-10 69.2 28.8 310 143-479 37-370 (504)
107 KOG1128 Uncharacterized conser 98.8 3.4E-07 7.3E-12 89.8 16.6 218 313-547 396-616 (777)
108 KOG1125 TPR repeat-containing 98.8 2E-07 4.4E-12 89.0 14.5 221 325-550 295-530 (579)
109 TIGR03302 OM_YfiO outer membra 98.8 8.9E-07 1.9E-11 80.4 18.4 60 491-550 171-235 (235)
110 PLN02789 farnesyltranstransfer 98.7 3.7E-06 8E-11 78.6 22.4 198 364-564 51-267 (320)
111 KOG1914 mRNA cleavage and poly 98.7 0.00034 7.4E-09 67.0 38.2 180 367-549 310-503 (656)
112 KOG1125 TPR repeat-containing 98.7 6E-07 1.3E-11 85.9 15.6 215 289-513 294-525 (579)
113 PLN02789 farnesyltranstransfer 98.6 5.1E-05 1.1E-09 71.1 26.7 225 327-556 49-311 (320)
114 KOG1128 Uncharacterized conser 98.6 1.5E-05 3.3E-10 78.7 22.8 210 284-513 402-614 (777)
115 KOG1070 rRNA processing protei 98.6 6.7E-06 1.5E-10 86.5 21.2 229 314-546 1457-1699(1710)
116 TIGR02552 LcrH_SycD type III s 98.6 1.6E-06 3.4E-11 71.0 13.9 117 438-556 5-123 (135)
117 COG5010 TadD Flp pilus assembl 98.6 1.8E-05 4E-10 68.7 20.5 157 354-513 70-229 (257)
118 KOG3081 Vesicle coat complex C 98.6 7E-05 1.5E-09 65.1 23.5 140 355-502 113-257 (299)
119 TIGR03302 OM_YfiO outer membra 98.6 5.3E-06 1.2E-10 75.3 17.5 165 384-566 32-217 (235)
120 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.4E-10 69.9 18.0 159 384-545 66-229 (257)
121 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.4E-12 54.9 4.4 33 481-513 2-34 (34)
122 PRK15179 Vi polysaccharide bio 98.5 2.3E-05 5E-10 81.0 23.1 131 416-548 86-218 (694)
123 KOG1070 rRNA processing protei 98.5 4.1E-05 8.9E-10 80.8 24.2 212 332-548 1442-1664(1710)
124 KOG1914 mRNA cleavage and poly 98.5 0.0011 2.5E-08 63.5 34.9 180 332-513 310-499 (656)
125 PRK15359 type III secretion sy 98.5 5.2E-06 1.1E-10 68.3 14.7 104 408-513 16-119 (144)
126 COG4783 Putative Zn-dependent 98.5 4.8E-05 1E-09 71.9 22.4 120 426-548 316-438 (484)
127 PF12854 PPR_1: PPR repeat 98.5 2.8E-07 6.1E-12 53.8 4.3 32 209-240 2-33 (34)
128 PRK14720 transcript cleavage f 98.5 2.3E-05 4.9E-10 81.9 20.8 215 314-564 30-269 (906)
129 KOG3060 Uncharacterized conser 98.4 2.1E-05 4.6E-10 67.6 16.6 191 361-553 23-226 (289)
130 KOG3060 Uncharacterized conser 98.4 7.4E-05 1.6E-09 64.4 19.5 199 327-529 24-233 (289)
131 PRK10370 formate-dependent nit 98.4 4.8E-05 1.1E-09 66.2 18.8 95 384-478 72-172 (198)
132 PRK14720 transcript cleavage f 98.4 0.00015 3.2E-09 76.0 24.9 233 142-427 29-268 (906)
133 PF09976 TPR_21: Tetratricopep 98.4 2.5E-05 5.4E-10 64.6 16.1 126 418-545 14-145 (145)
134 PRK15179 Vi polysaccharide bio 98.4 0.00017 3.6E-09 74.8 24.8 129 349-478 85-216 (694)
135 KOG3081 Vesicle coat complex C 98.3 0.00026 5.6E-09 61.7 20.6 155 391-551 114-275 (299)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.4E-05 5.2E-10 74.7 15.6 125 387-513 171-295 (395)
137 COG4783 Putative Zn-dependent 98.3 0.0002 4.4E-09 67.8 20.3 146 391-553 312-461 (484)
138 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.9E-05 6.2E-10 61.8 12.6 107 451-557 3-115 (119)
139 PF05843 Suf: Suppressor of fo 98.2 6.7E-05 1.4E-09 69.5 16.2 138 417-556 2-145 (280)
140 TIGR00756 PPR pentatricopeptid 98.2 3.5E-06 7.5E-11 50.1 4.5 35 145-179 1-35 (35)
141 PRK10153 DNA-binding transcrip 98.2 7.4E-05 1.6E-09 74.9 16.4 142 414-555 335-490 (517)
142 TIGR02552 LcrH_SycD type III s 98.2 6.2E-05 1.3E-09 61.5 13.2 93 419-513 20-112 (135)
143 PLN03088 SGT1, suppressor of 98.2 4.9E-05 1.1E-09 73.0 14.1 103 458-562 10-114 (356)
144 KOG0553 TPR repeat-containing 98.1 2.4E-05 5.2E-10 69.3 10.6 98 461-560 92-191 (304)
145 PF13812 PPR_3: Pentatricopept 98.1 5.3E-06 1.1E-10 48.9 4.3 33 145-177 2-34 (34)
146 PRK02603 photosystem I assembl 98.1 0.00014 3E-09 62.2 14.2 125 417-564 36-163 (172)
147 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.01 2.3E-07 55.9 31.9 415 134-559 30-543 (660)
148 TIGR00756 PPR pentatricopeptid 98.1 7.6E-06 1.7E-10 48.5 4.2 33 247-279 2-34 (35)
149 PF14559 TPR_19: Tetratricopep 98.0 1.2E-05 2.5E-10 56.6 5.7 65 497-561 2-68 (68)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00012 2.6E-09 70.0 14.2 121 147-272 172-295 (395)
151 PF13432 TPR_16: Tetratricopep 98.0 1.8E-05 3.9E-10 55.0 6.4 61 492-552 3-65 (65)
152 cd00189 TPR Tetratricopeptide 98.0 9.1E-05 2E-09 55.9 10.4 95 453-549 3-99 (100)
153 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 47.3 4.1 33 246-278 2-34 (34)
154 PF09976 TPR_21: Tetratricopep 98.0 0.00074 1.6E-08 55.7 16.0 113 328-441 24-143 (145)
155 KOG1258 mRNA processing protei 97.9 0.025 5.5E-07 55.7 32.5 402 143-565 44-488 (577)
156 KOG2053 Mitochondrial inherita 97.9 0.039 8.5E-07 56.8 40.8 216 125-345 21-256 (932)
157 KOG2053 Mitochondrial inherita 97.9 0.045 9.8E-07 56.3 43.2 194 80-275 43-256 (932)
158 PF12895 Apc3: Anaphase-promot 97.9 5.5E-05 1.2E-09 55.7 6.6 80 464-543 3-83 (84)
159 PF13414 TPR_11: TPR repeat; P 97.8 6.4E-05 1.4E-09 52.9 6.5 65 485-549 2-69 (69)
160 PF14938 SNAP: Soluble NSF att 97.8 0.0021 4.6E-08 59.8 18.4 147 390-548 99-267 (282)
161 PRK15363 pathogenicity island 97.8 0.00014 2.9E-09 59.0 8.8 98 449-548 34-133 (157)
162 COG3898 Uncharacterized membra 97.8 0.029 6.2E-07 52.1 25.1 223 327-562 132-372 (531)
163 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00085 1.8E-08 53.2 13.1 96 418-513 4-103 (119)
164 cd00189 TPR Tetratricopeptide 97.8 0.00036 7.8E-09 52.5 10.6 93 419-513 3-95 (100)
165 PRK15363 pathogenicity island 97.8 0.00098 2.1E-08 54.1 13.0 94 386-479 36-132 (157)
166 PF01535 PPR: PPR repeat; Int 97.7 4.1E-05 8.9E-10 43.8 3.5 31 145-175 1-31 (31)
167 PF13371 TPR_9: Tetratricopept 97.7 0.00016 3.4E-09 51.6 7.2 68 493-560 2-71 (73)
168 PF13281 DUF4071: Domain of un 97.7 0.0089 1.9E-07 56.5 20.4 174 385-561 141-348 (374)
169 KOG0553 TPR repeat-containing 97.7 0.00047 1E-08 61.4 11.0 92 395-489 91-185 (304)
170 PF13428 TPR_14: Tetratricopep 97.7 9.6E-05 2.1E-09 46.3 4.8 42 519-560 2-43 (44)
171 PF10037 MRP-S27: Mitochondria 97.7 0.00063 1.4E-08 65.5 12.2 118 210-327 62-185 (429)
172 PF12895 Apc3: Anaphase-promot 97.7 0.0001 2.2E-09 54.2 5.5 79 429-511 2-83 (84)
173 PF01535 PPR: PPR repeat; Int 97.7 6E-05 1.3E-09 43.1 3.3 29 247-275 2-30 (31)
174 COG4700 Uncharacterized protei 97.6 0.011 2.5E-07 48.8 16.6 95 419-513 92-187 (251)
175 KOG2041 WD40 repeat protein [G 97.6 0.095 2.1E-06 52.5 25.6 62 416-477 1019-1084(1189)
176 PF04840 Vps16_C: Vps16, C-ter 97.6 0.067 1.4E-06 50.3 28.2 104 392-511 184-287 (319)
177 PLN03088 SGT1, suppressor of 97.6 0.0015 3.2E-08 63.0 13.7 93 424-518 10-103 (356)
178 CHL00033 ycf3 photosystem I as 97.6 0.0012 2.6E-08 56.1 11.9 100 452-552 37-154 (168)
179 PRK10803 tol-pal system protei 97.6 0.0019 4E-08 58.8 13.4 102 452-556 145-255 (263)
180 PF14938 SNAP: Soluble NSF att 97.6 0.0017 3.6E-08 60.5 13.5 121 431-551 89-229 (282)
181 PF06239 ECSIT: Evolutionarily 97.6 0.0018 3.9E-08 55.2 12.0 113 234-365 34-153 (228)
182 PRK02603 photosystem I assembl 97.6 0.00065 1.4E-08 58.0 9.9 95 451-546 36-134 (172)
183 COG4235 Cytochrome c biogenesi 97.6 0.0052 1.1E-07 55.2 15.6 109 445-555 151-264 (287)
184 PF10037 MRP-S27: Mitochondria 97.5 0.0022 4.7E-08 61.9 14.0 117 246-362 67-185 (429)
185 PF08579 RPM2: Mitochondrial r 97.5 0.0011 2.5E-08 49.7 9.3 45 249-293 29-74 (120)
186 CHL00033 ycf3 photosystem I as 97.5 0.00062 1.3E-08 57.9 9.1 100 466-565 15-119 (168)
187 PF08579 RPM2: Mitochondrial r 97.5 0.0012 2.7E-08 49.5 9.2 80 147-226 28-116 (120)
188 COG4700 Uncharacterized protei 97.5 0.011 2.3E-07 48.9 15.2 119 446-566 85-207 (251)
189 PF07079 DUF1347: Protein of u 97.4 0.12 2.6E-06 49.2 35.3 415 123-544 16-521 (549)
190 KOG2041 WD40 repeat protein [G 97.4 0.17 3.8E-06 50.7 28.0 352 176-559 689-1101(1189)
191 PF05843 Suf: Suppressor of fo 97.4 0.0088 1.9E-07 55.4 15.9 130 317-448 3-139 (280)
192 KOG1130 Predicted G-alpha GTPa 97.4 0.0064 1.4E-07 56.5 14.1 146 418-563 197-366 (639)
193 PF13414 TPR_11: TPR repeat; P 97.4 0.00053 1.2E-08 48.1 5.6 50 517-566 2-51 (69)
194 PRK10866 outer membrane biogen 97.3 0.034 7.3E-07 50.2 17.7 53 457-509 182-235 (243)
195 KOG2280 Vacuolar assembly/sort 97.3 0.26 5.7E-06 50.0 29.9 335 172-541 425-793 (829)
196 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.4E-08 46.3 6.5 60 462-523 3-63 (68)
197 PRK10866 outer membrane biogen 97.3 0.069 1.5E-06 48.2 19.3 54 491-544 180-238 (243)
198 KOG0550 Molecular chaperone (D 97.2 0.11 2.3E-06 48.9 20.0 53 289-344 178-232 (486)
199 PF13525 YfiO: Outer membrane 97.2 0.029 6.3E-07 49.2 16.2 44 492-535 147-195 (203)
200 PF12688 TPR_5: Tetratrico pep 97.2 0.017 3.8E-07 45.2 12.9 101 323-423 9-113 (120)
201 PF13432 TPR_16: Tetratricopep 97.2 0.0019 4.2E-08 44.6 6.9 55 424-478 5-59 (65)
202 PRK10153 DNA-binding transcrip 97.2 0.011 2.5E-07 59.5 14.9 137 382-521 334-489 (517)
203 PF07079 DUF1347: Protein of u 97.2 0.23 5E-06 47.4 39.1 423 89-523 17-530 (549)
204 PF12688 TPR_5: Tetratrico pep 97.2 0.013 2.8E-07 45.9 12.0 105 150-254 7-115 (120)
205 PF06239 ECSIT: Evolutionarily 97.1 0.0039 8.4E-08 53.2 9.2 87 143-229 46-153 (228)
206 KOG2796 Uncharacterized conser 97.1 0.17 3.6E-06 44.6 22.5 135 419-554 180-322 (366)
207 KOG1538 Uncharacterized conser 97.1 0.26 5.7E-06 49.0 22.4 86 350-444 747-845 (1081)
208 KOG1538 Uncharacterized conser 97.1 0.047 1E-06 54.0 17.1 89 447-545 744-844 (1081)
209 PF13424 TPR_12: Tetratricopep 97.0 0.0012 2.6E-08 47.7 4.8 61 487-547 6-75 (78)
210 KOG0550 Molecular chaperone (D 97.0 0.024 5.2E-07 53.0 13.8 270 284-561 53-363 (486)
211 KOG1130 Predicted G-alpha GTPa 97.0 0.005 1.1E-07 57.2 9.4 278 152-445 25-344 (639)
212 COG4235 Cytochrome c biogenesi 97.0 0.037 8E-07 50.0 14.3 97 415-513 155-254 (287)
213 KOG2280 Vacuolar assembly/sort 97.0 0.55 1.2E-05 47.8 28.4 327 207-559 425-784 (829)
214 PF03704 BTAD: Bacterial trans 96.9 0.02 4.3E-07 47.3 12.0 72 418-489 64-139 (146)
215 KOG0543 FKBP-type peptidyl-pro 96.9 0.012 2.7E-07 55.0 11.5 125 422-548 214-356 (397)
216 KOG2796 Uncharacterized conser 96.9 0.25 5.5E-06 43.5 21.6 126 353-478 180-314 (366)
217 PRK10803 tol-pal system protei 96.9 0.017 3.8E-07 52.5 12.1 95 419-513 146-244 (263)
218 COG3898 Uncharacterized membra 96.9 0.41 8.8E-06 44.8 28.3 212 292-514 166-391 (531)
219 PF13525 YfiO: Outer membrane 96.7 0.21 4.5E-06 43.9 17.4 50 456-505 147-197 (203)
220 COG1729 Uncharacterized protei 96.7 0.022 4.8E-07 50.7 10.7 104 452-556 144-253 (262)
221 PRK15331 chaperone protein Sic 96.6 0.039 8.4E-07 45.2 10.8 87 428-516 49-135 (165)
222 PF13281 DUF4071: Domain of un 96.6 0.14 3E-06 48.7 15.7 76 114-189 142-227 (374)
223 PF13431 TPR_17: Tetratricopep 96.5 0.0029 6.3E-08 36.8 2.9 26 541-566 2-27 (34)
224 PF13371 TPR_9: Tetratricopept 96.5 0.02 4.3E-07 40.5 7.9 56 424-479 3-58 (73)
225 COG3118 Thioredoxin domain-con 96.4 0.29 6.2E-06 44.2 15.7 49 428-476 146-194 (304)
226 PF07719 TPR_2: Tetratricopept 96.4 0.012 2.5E-07 34.2 4.9 33 519-551 2-34 (34)
227 PF12921 ATP13: Mitochondrial 96.3 0.058 1.3E-06 42.7 10.1 49 446-494 48-96 (126)
228 PF04840 Vps16_C: Vps16, C-ter 96.3 0.95 2.1E-05 42.7 32.2 109 352-475 179-287 (319)
229 PF00515 TPR_1: Tetratricopept 96.3 0.011 2.3E-07 34.4 4.3 33 519-551 2-34 (34)
230 PRK15331 chaperone protein Sic 96.3 0.056 1.2E-06 44.3 9.8 98 455-555 42-141 (165)
231 COG1729 Uncharacterized protei 96.2 0.047 1E-06 48.6 9.8 95 418-513 144-242 (262)
232 PF13424 TPR_12: Tetratricopep 96.2 0.03 6.5E-07 40.2 7.4 23 489-511 49-71 (78)
233 PF03704 BTAD: Bacterial trans 96.2 0.23 4.9E-06 40.9 13.6 70 318-388 65-139 (146)
234 PF13512 TPR_18: Tetratricopep 96.1 0.45 9.7E-06 38.2 13.8 116 423-554 17-135 (142)
235 COG4105 ComL DNA uptake lipopr 96.1 0.99 2.1E-05 40.1 19.0 157 396-552 45-238 (254)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.026 5.7E-07 54.2 7.9 99 446-548 71-175 (453)
237 PF04184 ST7: ST7 protein; In 96.0 1.3 2.8E-05 43.3 18.8 101 455-555 264-383 (539)
238 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.6 3.5E-05 41.9 31.0 408 110-528 39-545 (660)
239 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.39 8.5E-06 46.5 15.1 61 384-444 74-140 (453)
240 smart00299 CLH Clathrin heavy 95.9 0.64 1.4E-05 37.9 14.7 86 81-170 10-95 (140)
241 KOG0543 FKBP-type peptidyl-pro 95.9 0.15 3.3E-06 48.0 11.8 121 390-513 213-353 (397)
242 PF09205 DUF1955: Domain of un 95.9 0.63 1.4E-05 36.4 13.1 84 398-483 69-152 (161)
243 PF04053 Coatomer_WDAD: Coatom 95.9 0.32 7E-06 48.1 14.8 158 151-340 268-427 (443)
244 KOG2114 Vacuolar assembly/sort 95.8 3 6.4E-05 43.5 29.0 215 77-306 282-516 (933)
245 PF13512 TPR_18: Tetratricopep 95.8 0.089 1.9E-06 42.1 8.6 57 496-552 20-81 (142)
246 smart00299 CLH Clathrin heavy 95.7 0.9 1.9E-05 37.0 15.4 82 186-271 14-95 (140)
247 COG0457 NrfG FOG: TPR repeat [ 95.7 1.4 3.1E-05 39.2 25.7 220 328-550 36-268 (291)
248 KOG1920 IkappaB kinase complex 95.7 3.5 7.7E-05 44.7 22.0 49 455-512 1004-1052(1265)
249 PF09205 DUF1955: Domain of un 95.7 0.63 1.4E-05 36.4 12.5 61 250-311 91-151 (161)
250 COG0457 NrfG FOG: TPR repeat [ 95.7 1.5 3.2E-05 39.1 28.9 217 293-513 36-263 (291)
251 PF12921 ATP13: Mitochondrial 95.7 0.2 4.2E-06 39.8 10.3 48 276-323 48-96 (126)
252 KOG3941 Intermediate in Toll s 95.6 0.11 2.3E-06 46.3 9.0 102 129-230 50-174 (406)
253 KOG1258 mRNA processing protei 95.5 3.1 6.8E-05 41.6 32.4 184 279-464 296-489 (577)
254 KOG1941 Acetylcholine receptor 95.4 1 2.2E-05 41.8 15.1 153 255-407 16-184 (518)
255 KOG3941 Intermediate in Toll s 95.4 0.16 3.5E-06 45.2 9.7 113 233-365 53-173 (406)
256 KOG4648 Uncharacterized conser 95.4 0.064 1.4E-06 48.9 7.4 100 459-561 106-208 (536)
257 KOG2114 Vacuolar assembly/sort 95.4 4.1 8.9E-05 42.5 21.0 152 75-243 361-519 (933)
258 PF04053 Coatomer_WDAD: Coatom 95.3 1.1 2.4E-05 44.3 16.2 105 392-513 325-429 (443)
259 KOG4555 TPR repeat-containing 95.1 0.25 5.4E-06 38.4 8.7 55 425-479 52-106 (175)
260 PF13181 TPR_8: Tetratricopept 95.1 0.048 1E-06 31.5 4.0 33 519-551 2-34 (34)
261 PRK11906 transcriptional regul 95.1 1.4 3.1E-05 42.8 15.8 109 431-543 319-432 (458)
262 KOG1585 Protein required for f 95.1 2.2 4.7E-05 37.6 17.4 145 385-542 91-251 (308)
263 KOG1941 Acetylcholine receptor 95.0 1.1 2.4E-05 41.7 13.9 127 420-546 126-274 (518)
264 PF10300 DUF3808: Protein of u 95.0 0.75 1.6E-05 46.2 14.5 83 431-513 248-332 (468)
265 COG2976 Uncharacterized protei 95.0 2 4.2E-05 36.5 14.3 114 434-551 70-192 (207)
266 PF10300 DUF3808: Protein of u 94.9 2.4 5.1E-05 42.7 17.7 159 318-478 191-375 (468)
267 KOG1586 Protein required for f 94.9 1.8 3.9E-05 37.7 14.1 17 325-341 24-40 (288)
268 PF08631 SPO22: Meiosis protei 94.8 3.3 7.2E-05 38.4 24.4 158 386-545 85-273 (278)
269 PRK11906 transcriptional regul 94.8 1.4 3E-05 42.9 14.8 127 432-560 274-414 (458)
270 PF02259 FAT: FAT domain; Int 94.8 4.2 9.1E-05 39.3 21.5 148 414-564 144-304 (352)
271 PF13176 TPR_7: Tetratricopept 94.7 0.065 1.4E-06 31.5 3.8 27 520-546 1-27 (36)
272 KOG1585 Protein required for f 94.7 2.8 6.1E-05 36.9 16.5 189 353-564 34-240 (308)
273 COG3118 Thioredoxin domain-con 94.5 3.7 8E-05 37.4 18.3 141 358-500 142-286 (304)
274 PF13428 TPR_14: Tetratricopep 94.4 0.17 3.8E-06 31.4 5.5 37 419-455 4-40 (44)
275 KOG1920 IkappaB kinase complex 94.3 9.8 0.00021 41.6 26.2 155 228-413 894-1054(1265)
276 COG4105 ComL DNA uptake lipopr 94.3 3.7 8.1E-05 36.6 18.5 56 423-478 174-232 (254)
277 PF14853 Fis1_TPR_C: Fis1 C-te 94.1 0.18 4E-06 32.6 5.1 40 522-561 5-44 (53)
278 KOG2396 HAT (Half-A-TPR) repea 94.1 6.6 0.00014 38.6 31.4 103 446-550 455-563 (568)
279 KOG1550 Extracellular protein 94.0 8.5 0.00018 39.8 20.6 276 261-550 228-541 (552)
280 KOG4555 TPR repeat-containing 93.9 0.96 2.1E-05 35.3 9.4 51 395-445 53-106 (175)
281 KOG0890 Protein kinase of the 93.9 17 0.00038 43.0 27.6 364 185-563 1389-1800(2382)
282 PF13174 TPR_6: Tetratricopept 93.9 0.13 2.8E-06 29.3 3.9 31 521-551 3-33 (33)
283 PRK09687 putative lyase; Provi 93.9 5.4 0.00012 36.9 26.9 236 111-360 35-277 (280)
284 PF07035 Mic1: Colon cancer-as 93.7 3.6 7.8E-05 34.3 16.3 130 300-440 14-144 (167)
285 KOG1464 COP9 signalosome, subu 93.7 5 0.00011 35.8 20.7 241 295-541 42-326 (440)
286 PF09613 HrpB1_HrpK: Bacterial 93.6 3.1 6.6E-05 34.3 12.4 53 427-479 21-73 (160)
287 PF00637 Clathrin: Region in C 93.5 0.012 2.5E-07 48.5 -1.5 129 83-229 12-140 (143)
288 PF04097 Nic96: Nup93/Nic96; 93.3 4.1 9E-05 42.6 16.2 47 144-192 112-158 (613)
289 PF08631 SPO22: Meiosis protei 92.9 7.8 0.00017 36.0 25.0 159 352-512 86-272 (278)
290 COG4649 Uncharacterized protei 92.9 1.9 4.2E-05 35.7 10.1 21 491-511 172-192 (221)
291 PF07035 Mic1: Colon cancer-as 92.8 4.9 0.00011 33.5 12.8 131 164-306 14-146 (167)
292 PF00637 Clathrin: Region in C 92.7 0.011 2.4E-07 48.6 -2.7 84 185-271 13-96 (143)
293 KOG4234 TPR repeat-containing 92.5 1.8 3.9E-05 36.7 9.8 88 423-513 102-195 (271)
294 KOG2063 Vacuolar assembly/sort 92.5 16 0.00035 39.3 18.9 115 247-361 506-637 (877)
295 PF09613 HrpB1_HrpK: Bacterial 92.2 1.2 2.6E-05 36.6 8.4 104 456-563 16-121 (160)
296 COG3629 DnrI DNA-binding trans 92.2 1.6 3.5E-05 39.8 10.1 80 416-495 153-236 (280)
297 PRK15180 Vi polysaccharide bio 92.0 1.3 2.8E-05 42.8 9.5 88 460-549 333-422 (831)
298 COG1747 Uncharacterized N-term 91.9 14 0.00031 36.5 24.3 159 313-478 64-233 (711)
299 KOG1464 COP9 signalosome, subu 91.7 9.5 0.00021 34.2 18.6 160 284-450 149-337 (440)
300 PF13374 TPR_10: Tetratricopep 91.5 0.5 1.1E-05 28.6 4.4 28 519-546 3-30 (42)
301 KOG2610 Uncharacterized conser 91.4 3.6 7.8E-05 38.0 11.1 155 396-552 114-283 (491)
302 PF13431 TPR_17: Tetratricopep 91.3 0.3 6.5E-06 28.2 3.0 24 446-469 9-32 (34)
303 COG2909 MalT ATP-dependent tra 91.3 23 0.00049 37.7 22.4 189 359-547 424-647 (894)
304 PF10602 RPN7: 26S proteasome 91.2 3.9 8.6E-05 34.8 11.0 94 418-513 38-140 (177)
305 PF13170 DUF4003: Protein of u 91.1 11 0.00025 35.1 14.7 47 162-208 80-132 (297)
306 KOG1586 Protein required for f 91.0 10 0.00023 33.3 13.0 16 361-376 25-40 (288)
307 PF13176 TPR_7: Tetratricopept 90.9 0.55 1.2E-05 27.5 3.9 26 146-171 1-26 (36)
308 KOG2066 Vacuolar assembly/sort 90.6 24 0.00052 36.9 26.9 34 498-534 673-706 (846)
309 KOG0276 Vesicle coat complex C 90.2 5.9 0.00013 39.7 12.1 152 226-413 598-749 (794)
310 PF10602 RPN7: 26S proteasome 90.1 5.9 0.00013 33.7 11.0 61 247-307 38-100 (177)
311 smart00028 TPR Tetratricopepti 90.0 0.58 1.3E-05 25.8 3.6 31 520-550 3-33 (34)
312 PF13170 DUF4003: Protein of u 90.0 17 0.00036 34.0 19.0 144 195-340 78-242 (297)
313 KOG4279 Serine/threonine prote 89.9 17 0.00036 37.7 15.2 39 524-562 372-410 (1226)
314 KOG0890 Protein kinase of the 89.6 54 0.0012 39.3 31.1 153 250-409 1388-1542(2382)
315 COG3629 DnrI DNA-binding trans 89.3 3.2 6.9E-05 37.9 9.2 76 214-289 153-236 (280)
316 COG4649 Uncharacterized protei 88.6 13 0.00029 31.0 15.4 127 418-546 61-195 (221)
317 PF04184 ST7: ST7 protein; In 88.3 28 0.00062 34.5 17.6 57 421-477 264-322 (539)
318 KOG0276 Vesicle coat complex C 88.3 6.2 0.00013 39.6 10.8 151 155-341 597-747 (794)
319 COG4785 NlpI Lipoprotein NlpI, 88.1 17 0.00036 31.6 14.5 176 363-547 78-266 (297)
320 COG4785 NlpI Lipoprotein NlpI, 88.1 17 0.00037 31.6 14.7 160 144-309 99-266 (297)
321 PRK11619 lytic murein transgly 87.4 42 0.00091 35.4 37.7 52 493-544 414-465 (644)
322 TIGR02561 HrpB1_HrpK type III 87.2 3.8 8.2E-05 33.2 7.3 94 452-549 9-108 (153)
323 KOG4507 Uncharacterized conser 87.0 1.9 4.1E-05 42.9 6.6 98 462-562 619-720 (886)
324 PF04190 DUF410: Protein of un 86.8 25 0.00054 32.2 16.2 83 383-479 88-170 (260)
325 PF06552 TOM20_plant: Plant sp 86.7 5.4 0.00012 33.5 8.1 26 534-559 96-121 (186)
326 KOG1550 Extracellular protein 86.7 43 0.00092 34.8 19.4 174 296-479 228-426 (552)
327 COG4455 ImpE Protein of avirul 86.4 22 0.00047 31.1 11.7 124 419-553 4-140 (273)
328 KOG4648 Uncharacterized conser 85.9 5.5 0.00012 36.9 8.5 91 392-485 104-197 (536)
329 KOG4570 Uncharacterized conser 85.8 8.1 0.00018 35.5 9.4 101 208-309 58-164 (418)
330 PRK09687 putative lyase; Provi 85.1 32 0.0007 31.9 27.8 23 455-478 240-262 (280)
331 PF13929 mRNA_stabil: mRNA sta 85.1 17 0.00038 33.2 11.2 112 432-543 144-263 (292)
332 COG2976 Uncharacterized protei 85.1 23 0.00051 30.3 14.2 89 357-445 96-188 (207)
333 COG2909 MalT ATP-dependent tra 85.1 59 0.0013 34.9 28.2 222 290-513 425-686 (894)
334 KOG2610 Uncharacterized conser 84.9 34 0.00074 32.0 21.5 152 325-477 113-274 (491)
335 COG1747 Uncharacterized N-term 84.9 44 0.00095 33.3 20.9 176 347-528 63-249 (711)
336 PF00515 TPR_1: Tetratricopept 84.9 3 6.6E-05 23.7 4.5 25 453-477 4-28 (34)
337 PRK10941 hypothetical protein; 84.2 11 0.00023 34.7 9.7 69 490-558 185-255 (269)
338 KOG4570 Uncharacterized conser 83.8 10 0.00022 34.9 9.0 101 108-209 59-165 (418)
339 PF02284 COX5A: Cytochrome c o 83.5 9 0.00019 28.7 7.1 59 434-494 28-87 (108)
340 PF07719 TPR_2: Tetratricopept 83.3 3.7 8E-05 23.2 4.4 24 454-477 5-28 (34)
341 PF13929 mRNA_stabil: mRNA sta 83.3 37 0.00081 31.2 13.6 113 158-270 142-263 (292)
342 PF07721 TPR_4: Tetratricopept 83.2 2.3 5E-05 22.6 3.2 20 491-510 6-25 (26)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 83.1 8.5 0.00018 28.5 6.8 58 434-493 25-83 (103)
344 KOG0403 Neoplastic transformat 82.8 49 0.0011 32.3 16.6 71 388-461 512-585 (645)
345 PRK12798 chemotaxis protein; R 82.7 49 0.0011 32.2 21.6 165 398-563 125-301 (421)
346 KOG3364 Membrane protein invol 82.5 23 0.0005 28.2 10.3 79 483-561 29-114 (149)
347 PF14863 Alkyl_sulf_dimr: Alky 82.5 7.7 0.00017 31.4 7.3 62 502-566 57-118 (141)
348 smart00386 HAT HAT (Half-A-TPR 81.8 3.9 8.4E-05 22.7 4.1 30 532-561 1-30 (33)
349 PF04910 Tcf25: Transcriptiona 81.6 53 0.0012 31.8 13.9 53 424-476 111-165 (360)
350 cd00923 Cyt_c_Oxidase_Va Cytoc 81.3 11 0.00023 27.9 6.8 46 161-206 24-69 (103)
351 PF13374 TPR_10: Tetratricopep 81.2 3.3 7.2E-05 24.8 3.9 28 145-172 3-30 (42)
352 PF10345 Cohesin_load: Cohesin 81.1 78 0.0017 33.4 36.1 49 326-374 372-428 (608)
353 PF06552 TOM20_plant: Plant sp 81.0 3.9 8.6E-05 34.3 5.2 33 533-565 50-82 (186)
354 PF02259 FAT: FAT domain; Int 80.7 55 0.0012 31.4 22.8 64 280-343 146-212 (352)
355 PF11207 DUF2989: Protein of u 80.5 15 0.00033 31.6 8.6 69 467-537 123-197 (203)
356 PF02284 COX5A: Cytochrome c o 80.5 15 0.00033 27.5 7.4 48 262-309 27-74 (108)
357 cd08819 CARD_MDA5_2 Caspase ac 80.1 12 0.00027 27.1 6.7 66 97-164 21-86 (88)
358 PF11207 DUF2989: Protein of u 80.1 28 0.00061 30.1 10.0 73 332-405 123-198 (203)
359 KOG4234 TPR repeat-containing 79.2 13 0.00029 31.8 7.7 86 394-479 104-197 (271)
360 PF04097 Nic96: Nup93/Nic96; 78.6 93 0.002 32.8 23.0 89 251-344 264-356 (613)
361 PF11846 DUF3366: Domain of un 78.5 9.4 0.0002 33.1 7.2 36 514-549 140-175 (193)
362 PF09670 Cas_Cas02710: CRISPR- 77.7 50 0.0011 32.3 12.5 51 428-478 143-197 (379)
363 TIGR02561 HrpB1_HrpK type III 77.6 37 0.00081 27.7 11.4 65 362-427 22-87 (153)
364 PF13762 MNE1: Mitochondrial s 77.6 32 0.0007 28.0 9.2 78 115-192 41-128 (145)
365 PF13762 MNE1: Mitochondrial s 77.4 37 0.00081 27.6 9.9 77 217-293 42-128 (145)
366 PF08424 NRDE-2: NRDE-2, neces 77.4 68 0.0015 30.5 15.8 114 433-548 48-184 (321)
367 COG4976 Predicted methyltransf 77.0 4.6 0.0001 35.2 4.5 58 495-552 4-63 (287)
368 PRK10941 hypothetical protein; 76.5 8.8 0.00019 35.2 6.6 46 521-566 184-229 (269)
369 COG3947 Response regulator con 76.1 65 0.0014 29.7 15.3 71 419-489 282-356 (361)
370 TIGR02508 type_III_yscG type I 75.7 31 0.00067 25.8 9.5 87 194-284 20-106 (115)
371 TIGR03504 FimV_Cterm FimV C-te 74.7 5.8 0.00013 24.5 3.4 24 150-173 5-28 (44)
372 PF13181 TPR_8: Tetratricopept 74.7 8.3 0.00018 21.7 4.1 26 453-478 4-29 (34)
373 PF13174 TPR_6: Tetratricopept 74.4 6.6 0.00014 21.9 3.6 22 457-478 7-28 (33)
374 PF04190 DUF410: Protein of un 74.4 70 0.0015 29.3 16.8 157 126-308 3-169 (260)
375 TIGR03504 FimV_Cterm FimV C-te 73.0 9 0.0002 23.7 3.9 24 321-344 5-28 (44)
376 KOG2471 TPR repeat-containing 73.0 1E+02 0.0023 30.6 16.0 105 426-531 250-382 (696)
377 COG3947 Response regulator con 72.5 80 0.0017 29.1 15.3 54 320-374 284-337 (361)
378 PF10579 Rapsyn_N: Rapsyn N-te 72.3 9.6 0.00021 27.0 4.4 47 462-508 18-65 (80)
379 KOG2396 HAT (Half-A-TPR) repea 71.9 1.1E+02 0.0024 30.5 32.1 65 143-208 104-169 (568)
380 PF07720 TPR_3: Tetratricopept 71.4 18 0.00039 21.2 4.8 32 520-551 3-36 (36)
381 KOG2066 Vacuolar assembly/sort 71.1 1.5E+02 0.0032 31.5 25.7 153 84-245 362-536 (846)
382 PF07163 Pex26: Pex26 protein; 70.1 63 0.0014 29.5 9.9 86 251-338 89-181 (309)
383 PF10579 Rapsyn_N: Rapsyn N-te 70.0 11 0.00024 26.7 4.2 46 428-473 18-66 (80)
384 COG5159 RPN6 26S proteasome re 69.2 93 0.002 28.5 22.5 51 251-301 9-66 (421)
385 cd00280 TRFH Telomeric Repeat 69.0 24 0.00052 29.8 6.7 27 494-520 119-145 (200)
386 PRK15180 Vi polysaccharide bio 68.6 1.3E+02 0.0028 29.9 27.6 123 84-209 295-421 (831)
387 PF07163 Pex26: Pex26 protein; 68.5 60 0.0013 29.7 9.5 12 397-408 170-181 (309)
388 COG4941 Predicted RNA polymera 68.5 98 0.0021 29.1 11.0 124 432-558 272-405 (415)
389 COG4455 ImpE Protein of avirul 67.8 35 0.00075 29.9 7.6 74 452-527 3-81 (273)
390 PF11846 DUF3366: Domain of un 67.4 24 0.00051 30.6 7.0 33 481-513 139-171 (193)
391 KOG2063 Vacuolar assembly/sort 66.6 2E+02 0.0044 31.5 18.0 112 115-227 506-639 (877)
392 PRK11619 lytic murein transgly 66.2 1.8E+02 0.004 30.8 34.8 329 180-546 35-374 (644)
393 TIGR02508 type_III_yscG type I 66.0 54 0.0012 24.6 9.4 61 392-454 46-106 (115)
394 COG0790 FOG: TPR repeat, SEL1 65.7 1.2E+02 0.0025 28.3 17.4 81 362-445 53-142 (292)
395 KOG3807 Predicted membrane pro 65.0 1.2E+02 0.0027 28.4 14.7 120 422-559 281-403 (556)
396 KOG1498 26S proteasome regulat 64.3 1.4E+02 0.0031 28.8 16.9 195 258-486 25-248 (439)
397 KOG2422 Uncharacterized conser 63.8 1.8E+02 0.0038 29.8 15.7 176 385-564 284-495 (665)
398 PRK13342 recombination factor 62.8 1.7E+02 0.0036 29.1 16.4 21 259-279 244-264 (413)
399 COG5108 RPO41 Mitochondrial DN 62.6 75 0.0016 32.8 9.9 75 250-327 33-115 (1117)
400 KOG2908 26S proteasome regulat 62.3 1.3E+02 0.0028 28.5 10.5 81 433-513 55-142 (380)
401 PF14669 Asp_Glu_race_2: Putat 62.2 1E+02 0.0022 26.5 13.8 55 285-339 137-205 (233)
402 cd08819 CARD_MDA5_2 Caspase ac 61.9 60 0.0013 23.7 7.2 65 198-264 21-85 (88)
403 PRK13800 putative oxidoreducta 61.9 2.7E+02 0.0058 31.2 29.5 154 383-546 726-880 (897)
404 PF12862 Apc5: Anaphase-promot 61.2 59 0.0013 24.1 7.2 18 528-545 51-68 (94)
405 KOG0686 COP9 signalosome, subu 60.5 1.7E+02 0.0037 28.5 14.7 57 216-272 152-214 (466)
406 KOG0545 Aryl-hydrocarbon recep 60.5 36 0.00079 30.3 6.5 103 453-555 181-301 (329)
407 PF00244 14-3-3: 14-3-3 protei 60.2 1.3E+02 0.0028 27.1 12.3 39 322-360 8-46 (236)
408 PF10366 Vps39_1: Vacuolar sor 59.5 62 0.0013 24.8 7.1 27 146-172 41-67 (108)
409 PF10366 Vps39_1: Vacuolar sor 59.4 79 0.0017 24.3 7.9 27 418-444 41-67 (108)
410 KOG4642 Chaperone-dependent E3 59.2 1.1E+02 0.0024 27.3 9.2 81 360-442 20-104 (284)
411 KOG2034 Vacuolar sorting prote 58.5 2.7E+02 0.0059 30.2 23.5 50 121-170 366-415 (911)
412 PF14561 TPR_20: Tetratricopep 58.4 72 0.0016 23.5 7.5 51 483-533 19-73 (90)
413 PF04034 DUF367: Domain of unk 56.2 82 0.0018 24.9 7.2 59 486-544 66-125 (127)
414 PF09477 Type_III_YscG: Bacter 54.6 95 0.0021 23.7 10.1 87 193-283 20-106 (116)
415 PF11848 DUF3368: Domain of un 54.3 52 0.0011 20.8 5.0 34 255-288 12-45 (48)
416 cd00280 TRFH Telomeric Repeat 54.3 85 0.0018 26.7 7.4 63 432-498 85-155 (200)
417 KOG0403 Neoplastic transformat 54.0 2.3E+02 0.005 28.0 16.5 75 419-498 512-586 (645)
418 KOG3824 Huntingtin interacting 53.9 25 0.00055 32.3 4.7 58 498-555 128-187 (472)
419 PF09477 Type_III_YscG: Bacter 53.3 1E+02 0.0022 23.6 9.5 84 366-452 22-105 (116)
420 KOG0545 Aryl-hydrocarbon recep 53.2 1.7E+02 0.0037 26.3 10.3 96 416-513 178-291 (329)
421 COG5159 RPN6 26S proteasome re 53.2 1.9E+02 0.0041 26.7 16.0 121 322-442 10-151 (421)
422 PF08424 NRDE-2: NRDE-2, neces 52.3 2.2E+02 0.0047 27.2 15.5 98 347-445 16-131 (321)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 52.0 1.2E+02 0.0026 24.1 8.9 43 468-511 81-124 (126)
424 KOG4567 GTPase-activating prot 51.9 1.9E+02 0.0041 27.0 9.7 71 199-270 263-343 (370)
425 PF14689 SPOB_a: Sensor_kinase 51.8 41 0.00088 22.7 4.5 23 320-342 28-50 (62)
426 KOG4077 Cytochrome c oxidase, 51.7 82 0.0018 24.8 6.4 43 164-206 69-111 (149)
427 PRK10564 maltose regulon perip 50.9 31 0.00068 31.8 4.9 38 247-284 259-296 (303)
428 PF14689 SPOB_a: Sensor_kinase 50.7 24 0.00053 23.8 3.3 22 491-512 28-49 (62)
429 KOG4507 Uncharacterized conser 50.6 50 0.0011 33.5 6.5 109 100-209 197-313 (886)
430 PRK10564 maltose regulon perip 49.9 27 0.0006 32.2 4.4 38 146-183 259-296 (303)
431 KOG2297 Predicted translation 49.7 2.2E+02 0.0048 26.5 13.4 71 212-293 163-236 (412)
432 PF12968 DUF3856: Domain of Un 49.6 1.3E+02 0.0027 23.7 9.9 60 487-546 56-128 (144)
433 PF11817 Foie-gras_1: Foie gra 49.5 64 0.0014 29.3 6.9 53 491-543 183-243 (247)
434 KOG3824 Huntingtin interacting 49.5 27 0.00059 32.1 4.2 36 528-563 126-161 (472)
435 COG5191 Uncharacterized conser 49.1 42 0.00091 31.0 5.3 66 446-513 103-169 (435)
436 KOG3807 Predicted membrane pro 48.5 1.5E+02 0.0034 27.7 8.8 61 385-445 275-340 (556)
437 PF11848 DUF3368: Domain of un 48.3 68 0.0015 20.2 5.2 31 327-357 14-44 (48)
438 KOG2297 Predicted translation 48.3 1.7E+02 0.0037 27.3 8.9 46 76-127 163-210 (412)
439 KOG0292 Vesicle coat complex C 48.1 2.5E+02 0.0055 30.4 11.2 132 394-548 652-783 (1202)
440 smart00638 LPD_N Lipoprotein N 47.3 3.6E+02 0.0078 28.3 22.9 64 213-278 309-373 (574)
441 PF01347 Vitellogenin_N: Lipop 47.2 3.7E+02 0.0081 28.4 17.5 263 197-460 322-617 (618)
442 PF11768 DUF3312: Protein of u 47.0 2.7E+02 0.0059 28.4 10.9 126 389-538 412-543 (545)
443 KOG0376 Serine-threonine phosp 46.7 35 0.00076 33.6 4.8 106 423-531 11-118 (476)
444 PF11663 Toxin_YhaV: Toxin wit 46.3 27 0.00059 27.8 3.3 34 154-189 105-138 (140)
445 PF14853 Fis1_TPR_C: Fis1 C-te 46.3 73 0.0016 20.7 4.8 20 494-513 9-28 (53)
446 KOG0991 Replication factor C, 46.2 2.2E+02 0.0048 25.5 13.3 120 388-512 133-264 (333)
447 KOG4642 Chaperone-dependent E3 46.0 2.2E+02 0.0049 25.5 9.5 119 395-513 20-144 (284)
448 COG2912 Uncharacterized conser 45.6 43 0.00092 30.5 4.9 67 491-557 186-254 (269)
449 PF04090 RNA_pol_I_TF: RNA pol 44.1 2.2E+02 0.0047 24.8 11.2 31 419-449 44-74 (199)
450 PRK02287 hypothetical protein; 44.0 1.6E+02 0.0035 24.7 7.6 59 487-545 108-167 (171)
451 PF11663 Toxin_YhaV: Toxin wit 43.7 27 0.00059 27.8 2.9 32 256-289 106-137 (140)
452 PF09986 DUF2225: Uncharacteri 43.6 2.3E+02 0.005 25.0 9.9 88 461-548 88-195 (214)
453 PF12862 Apc5: Anaphase-promot 42.9 1.4E+02 0.0029 22.1 7.5 19 459-477 50-68 (94)
454 COG0790 FOG: TPR repeat, SEL1 42.8 2.8E+02 0.0061 25.7 19.2 146 326-479 52-220 (292)
455 PHA02875 ankyrin repeat protei 42.4 3.5E+02 0.0076 26.7 14.6 137 154-302 9-154 (413)
456 cd08326 CARD_CASP9 Caspase act 42.0 91 0.002 22.6 5.3 63 97-163 18-80 (84)
457 KOG1498 26S proteasome regulat 41.8 3.4E+02 0.0073 26.4 15.9 97 420-516 135-242 (439)
458 smart00544 MA3 Domain in DAP-5 41.8 1.6E+02 0.0034 22.6 8.7 21 422-442 8-28 (113)
459 PF13934 ELYS: Nuclear pore co 41.1 2.6E+02 0.0057 24.9 12.9 70 456-529 114-183 (226)
460 PRK13800 putative oxidoreducta 40.9 5.7E+02 0.012 28.7 28.4 48 485-532 788-835 (897)
461 KOG0686 COP9 signalosome, subu 40.8 3.6E+02 0.0078 26.4 14.1 56 387-442 152-213 (466)
462 PF11838 ERAP1_C: ERAP1-like C 40.6 3.2E+02 0.007 25.8 19.5 80 195-274 146-230 (324)
463 PF11768 DUF3312: Protein of u 40.4 4.2E+02 0.0092 27.1 12.6 61 248-309 411-473 (545)
464 KOG4521 Nuclear pore complex, 40.3 4.8E+02 0.01 29.6 12.0 181 320-509 925-1125(1480)
465 KOG2471 TPR repeat-containing 40.0 4.1E+02 0.0088 26.8 14.5 105 459-563 249-380 (696)
466 KOG2659 LisH motif-containing 39.6 2.8E+02 0.006 24.7 8.7 92 419-511 29-128 (228)
467 KOG2581 26S proteasome regulat 39.5 3.8E+02 0.0082 26.3 12.2 64 487-551 210-280 (493)
468 COG5108 RPO41 Mitochondrial DN 38.7 2.1E+02 0.0045 29.9 8.7 46 184-229 33-80 (1117)
469 PF07064 RIC1: RIC1; InterPro 38.1 3.2E+02 0.0069 25.0 15.1 26 147-172 85-110 (258)
470 PF11817 Foie-gras_1: Foie gra 38.1 1.2E+02 0.0027 27.5 6.9 53 456-508 184-240 (247)
471 KOG0376 Serine-threonine phosp 37.6 69 0.0015 31.7 5.2 101 392-495 11-114 (476)
472 PHA02537 M terminase endonucle 37.4 3.1E+02 0.0066 24.6 10.1 22 530-551 190-211 (230)
473 PF04910 Tcf25: Transcriptiona 37.3 4E+02 0.0086 25.9 17.4 53 323-375 111-164 (360)
474 PF09454 Vps23_core: Vps23 cor 37.2 85 0.0018 21.4 4.2 49 242-291 5-53 (65)
475 PRK11639 zinc uptake transcrip 37.0 1.2E+02 0.0027 25.5 6.2 35 195-229 41-75 (169)
476 PF04090 RNA_pol_I_TF: RNA pol 37.0 98 0.0021 26.8 5.6 30 79-108 42-71 (199)
477 COG0735 Fur Fe2+/Zn2+ uptake r 36.9 1.3E+02 0.0029 24.6 6.2 45 185-229 26-70 (145)
478 PF07064 RIC1: RIC1; InterPro 36.6 3.4E+02 0.0073 24.9 15.7 63 491-553 184-255 (258)
479 PF14561 TPR_20: Tetratricopep 36.6 1.7E+02 0.0037 21.5 8.3 36 444-479 16-51 (90)
480 PF09986 DUF2225: Uncharacteri 35.9 3.1E+02 0.0067 24.2 9.0 65 453-517 121-196 (214)
481 COG0735 Fur Fe2+/Zn2+ uptake r 35.5 2.1E+02 0.0045 23.4 7.1 22 289-310 29-50 (145)
482 PRK14962 DNA polymerase III su 35.2 5E+02 0.011 26.4 14.0 24 156-179 255-278 (472)
483 cd08332 CARD_CASP2 Caspase act 35.0 1.8E+02 0.004 21.4 6.1 59 97-159 22-80 (90)
484 PF03745 DUF309: Domain of unk 34.4 94 0.002 21.0 4.1 35 154-188 9-43 (62)
485 PLN03192 Voltage-dependent pot 34.2 4.8E+02 0.01 28.9 11.9 17 286-302 625-641 (823)
486 PF07575 Nucleopor_Nup85: Nup8 34.1 81 0.0018 32.9 5.7 61 244-306 404-464 (566)
487 KOG1308 Hsp70-interacting prot 34.1 57 0.0012 30.7 3.9 88 397-485 126-216 (377)
488 PRK09462 fur ferric uptake reg 34.1 2.6E+02 0.0056 22.9 7.6 19 366-384 33-51 (148)
489 PF12583 TPPII_N: Tripeptidyl 33.3 2E+02 0.0043 22.9 6.1 34 528-561 86-119 (139)
490 PF08311 Mad3_BUB1_I: Mad3/BUB 32.9 2.5E+02 0.0054 22.3 9.8 42 434-475 81-124 (126)
491 PF14669 Asp_Glu_race_2: Putat 32.6 3.3E+02 0.0071 23.6 15.5 56 355-410 137-206 (233)
492 TIGR02710 CRISPR-associated pr 32.5 3.8E+02 0.0083 26.1 9.3 53 423-475 137-196 (380)
493 COG4259 Uncharacterized protei 32.2 2.2E+02 0.0048 21.4 5.8 35 524-558 78-112 (121)
494 PRK13342 recombination factor 31.7 5.3E+02 0.011 25.6 17.1 42 319-360 231-275 (413)
495 PRK11639 zinc uptake transcrip 31.6 2E+02 0.0043 24.2 6.6 34 296-329 41-74 (169)
496 PF10255 Paf67: RNA polymerase 31.5 1.2E+02 0.0025 29.9 5.7 57 216-272 124-191 (404)
497 KOG3364 Membrane protein invol 31.2 2.8E+02 0.0062 22.4 8.7 66 447-513 29-98 (149)
498 PHA02875 ankyrin repeat protei 30.9 5.3E+02 0.012 25.4 16.6 18 120-137 39-56 (413)
499 KOG4567 GTPase-activating prot 30.9 4.6E+02 0.0099 24.7 10.1 92 335-431 263-364 (370)
500 KOG1839 Uncharacterized protei 30.0 5.9E+02 0.013 29.2 11.1 154 187-340 940-1124(1236)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-73 Score=610.69 Aligned_cols=492 Identities=36% Similarity=0.612 Sum_probs=454.4
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
+..++..+|+.++++|+..+++..++++|..+++.|+.|++.++|.++.+|+++|++++|.++|++|+++|..+||++|.
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 34555566666666666666666666666666666667777788999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 233 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
|.++|++|.++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHH-------------------------------HHHHHCCCCCCHHHHHHHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTF-------------------------------KEMLSQGFCPTSATISSILPACA 361 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~-------------------------------~~m~~~~~~~~~~~~~~ll~~~~ 361 (566)
|+..+|+.||.+|++.|++++|.++| ++|.. ++.||..||..++.+|+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 86666666666666666555555554 55543 57899999999999999
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036165 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
+.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+|++||.+|+++|+.++|.++|++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHH
Q 036165 442 MEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520 (566)
Q Consensus 442 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 520 (566)
|.+. ..||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|..+||..+
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~ 659 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHH
Confidence 9998 899999999999999999999999999999996669999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
|.+|+.+|..+|+.+.++.+.+++++++|+++.+|+.|+++|+..|
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999876
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-68 Score=570.30 Aligned_cols=490 Identities=28% Similarity=0.520 Sum_probs=451.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
+.+++..+|..+++.|.+.+.+..+.+++..+++.+..++..++|.++.+|+++|+++.|.++|++|+++|+.+||.+|.
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
+|++.|++++|+++|++|...|+.||..||+.++.+|+..++++.+.+++..+.+.|+.||..+++.|+.+|++.|++++
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 233 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
|.++|++|.++|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999998888888888888888888877776
Q ss_pred C-------------------------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036165 313 P-------------------------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361 (566)
Q Consensus 313 ~-------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 361 (566)
| |..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 6 455666677777777888888888899999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036165 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
+.|+++.|.++++.+.+.|+.++..+++.|+++|+++|++++|.++|++|.++|..+|+.++.+|++.|+.++|..+|++
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 036165 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521 (566)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 521 (566)
|....+||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ +||..+|
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~ 557 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSW 557 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhH
Confidence 99879999999999999999999999999999999988 99888888888888888888888888888887 7888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh--hCCCCchHHHHHHHHHhhcC
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g 566 (566)
++++.+|.++|+.++|.++|++|.+ ..|+..+ +..+...|.+.|
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g 603 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcC
Confidence 8888888888888888888888876 4566655 444444555544
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-65 Score=537.51 Aligned_cols=486 Identities=17% Similarity=0.237 Sum_probs=454.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHH
Q 036165 76 LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154 (566)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 154 (566)
.+...|..++..+.+.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|..++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3456788899999999999999999999999985 578888899999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 234 (566)
++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCCChhhHHHHHHHHHHcCChhHHHHHHHHhhh--CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036165 235 KVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT--PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308 (566)
Q Consensus 235 ~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 308 (566)
++|++| ..||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999 458999999999999999999999999999976 68999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHH
Q 036165 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388 (566)
Q Consensus 309 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 388 (566)
.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhcc
Q 036165 389 SALVDMYAKCGFISEARTLFDKMS----ERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 389 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 463 (566)
+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+. ..||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999995 499999999999999999999999999999988 899999999999999999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cC-------------------CHHHHHHHHHhcC---CCCC
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AG-------------------RLAEAYEMIKTMS---TEPD 517 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~~~---~~p~ 517 (566)
|++++|.+++++|.+. |+.||..+|++++..+.+ ++ ..++|..+|++|. ..||
T Consensus 768 G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 768 DDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 9999999999999998 999999999999876432 22 2367999999998 5699
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hCCCCchHHHHHHHHH
Q 036165 518 LFVWGALLGACKNHGNIELAEIAAKHLSE-LEPESAANNMLLTDLY 562 (566)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~ 562 (566)
..||+.++.++.+.+..+.+..+++.+.. -.+.+...|..|.+-+
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 99999999888888999999888887653 2344455566665543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-63 Score=521.82 Aligned_cols=448 Identities=28% Similarity=0.438 Sum_probs=422.4
Q ss_pred CchHHHHHHHHHHhhcCChHHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHH
Q 036165 111 RLTQIATKLITFYTECQNIHHARMLFDEIPK-----TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185 (566)
Q Consensus 111 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 185 (566)
.+...++.++..|.+.|++++|.++|+.|.. +|..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 4556788888888888888888888887743 57788999999999999999999999999999999999999999
Q ss_pred HHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCChhhHHHHHHHHHHcCCh
Q 036165 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLA 261 (566)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~ 261 (566)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++| ..+|..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999885 478889999999999999999999999998 446888999999999999999
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 262 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .+|..+||.+|.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 458999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHH
Q 036165 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421 (566)
Q Consensus 342 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 421 (566)
.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+++|+++|++++|.++|++|.++|..+||+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036165 422 MIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 500 (566)
||.+|+++|+.++|.++|++|.+. ..||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 999999999999999999999998 9999999999999999999999999999999987799999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 501 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++++|.+++++|..+|+..+|++|+.+|..+|+.+.|..+++++++.+|+++..|..|+++|.+.|
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999876
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-62 Score=515.97 Aligned_cols=467 Identities=16% Similarity=0.246 Sum_probs=440.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC----CCcchHHHH
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK----TNIHRWIAL 150 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 150 (566)
+++.-.+..++..|.+.|.+++|..+++.|.. |+..+|+.++..|++.|+++.|.++|+.|.+ ||..+|+.+
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555677889999999999999999998864 8999999999999999999999999999975 789999999
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC------CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHH
Q 036165 231 EKAKKVFDEMV------EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304 (566)
Q Consensus 231 ~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 304 (566)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999993 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc
Q 036165 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384 (566)
Q Consensus 305 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 384 (566)
+|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHH
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSE----RNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTA 459 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 459 (566)
..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.+++++|.+. ..||..+|+.++..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999974 99999999999999999999999999999998 89999999999876
Q ss_pred Hhc----c-------------------CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 036165 460 CCH----V-------------------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--- 513 (566)
Q Consensus 460 ~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 513 (566)
|.+ . +..+.|..+|++|++. |+.||..+|+.++.++++.+..+.+..+++.|.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 542 1 1236799999999999 999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
..|+..+|++++.++.+. .++|..+++.|.+.+
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 447789999999998433 478999999999744
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-61 Score=507.32 Aligned_cols=432 Identities=26% Similarity=0.377 Sum_probs=418.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
++.++..+|+.++.+|++.++++.+.++|..+.+.|+.||+.++|.++.+|+++|++++|.++|++|++||..+||.+|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|..+.+.+++..+.+.|+.||..+++.|+++|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 233 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 5789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 393 DMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
.+|.+.|.+++|.++|+.|.+ |+..+|+.++.+|++.|++++|.+++++|. ..|+..+|++++.+|...|+++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcH
Confidence 999999999999999999963 889999999999999999999999998764 6899999999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 468 LGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|..+++++. +..|+ ..+|..|+++|++.|++++|.++++.|.
T Consensus 512 ~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 512 LGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999987 45564 6799999999999999999999999997
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.9e-31 Score=287.83 Aligned_cols=482 Identities=14% Similarity=0.049 Sum_probs=331.3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC-------------
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK------------- 141 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------- 141 (566)
+.++..+..+...+...|+++.|..+++.+.+... .+...+..+...+...|++++|.+.|+.+.+
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence 34455566666666666666666666666665432 2344444555555555555555555544332
Q ss_pred ------------------------CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhH
Q 036165 142 ------------------------TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197 (566)
Q Consensus 142 ------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 197 (566)
.+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 233445555555555555555555555555432 1233344445555555566666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhC
Q 036165 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274 (566)
Q Consensus 198 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 274 (566)
|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.. .+...+..++..+.+.|++++|..+++.+...
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 666666655543 33455555566666666666666666666522 23445556666667777777777777766543
Q ss_pred CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 036165 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354 (566)
Q Consensus 275 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 354 (566)
. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 2 4456667777777777777777777777776542 3345566677777777777777777777776643 34456677
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCh
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYC 432 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 432 (566)
.+...+...|+++.|..+++.+.+..+ .+...+..+...+.+.|++++|...|+++.. |+..++..++.++...|++
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 777777777777777777777776653 3566677778888888888888888887764 5556777778888888888
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
++|.+.++++.+..+.+...+..+...+...|++++|.+.|+++.+. .+.++..++.++..+.+.|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 88888888888877778888888888888899999999999988875 35567788888888988888 7798888887
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 513 S--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 513 ~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
. .+.++.++..+...+...|++++|...++++++.+|.++.++..++.+|.+.|
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 6 23456677788888999999999999999999999999999999999998776
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-30 Score=285.27 Aligned_cols=480 Identities=13% Similarity=0.045 Sum_probs=326.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHH
Q 036165 77 SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGA 153 (566)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 153 (566)
++..+..+...+.+.|+++.|...++.+.+.. +.++..+..+...+.+.|++++|.+.|+++.+ .+...|..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34445555566666677777777777666554 23455666667777777777777777766544 234456666666
Q ss_pred HHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 036165 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233 (566)
Q Consensus 154 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 233 (566)
+...|++++|++.|+++.+.+.. .......++..+.+.|++++|.++++.+.+. .+.+..++..+...+...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHH
Confidence 67777777777777776654322 2233344555666667777777777776654 245566777777777777888888
Q ss_pred HHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036165 234 KKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 234 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
.+.|+++.+ .+...+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++.+.+
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 877777632 344566667777777777777777777776543 3455667777777777777777777777776553
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHH
Q 036165 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390 (566)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (566)
+.+...+..++..+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++.+.+.... +...+..
T Consensus 564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 640 (899)
T TIGR02917 564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLL 640 (899)
T ss_pred -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 3345566677777777777777777777776543 455667777777777778888887777777765432 5566667
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
+..+|.+.|++++|..+|+++.+ .+..++..++..+...|++++|.++++.+.+..+.+...+..+...+...|+++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 77777777788887777777654 345667777777777777777777777777766666667777777777777777
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
+|.+.++.+... .|+..++..++.++.+.|++++|.+.++++. .+.+..++..+...|...|++++|...+++++
T Consensus 721 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 721 AAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 777777777654 3444666667777777777777777777665 23456666667777777777777777777777
Q ss_pred hhCCCCchHHHHHHHHHhhcC
Q 036165 546 ELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 546 ~~~p~~~~~~~~l~~~~~~~g 566 (566)
+.+|+++..+..++++|...|
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcC
Confidence 777777777777777766544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.4e-22 Score=223.59 Aligned_cols=484 Identities=12% Similarity=0.044 Sum_probs=232.3
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHH----------------HHHHHHHhhcCChHHHHHHhc
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA----------------TKLITFYTECQNIHHARMLFD 137 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~ 137 (566)
-|-+++.+......+...|+.++|.+.++++.+..+. ++... -.+...+...|++++|.+.|+
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455677777777777788888888888888777632 22221 222345677788888888777
Q ss_pred cCCCCCcchHH----HHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC-
Q 036165 138 EIPKTNIHRWI----ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT- 212 (566)
Q Consensus 138 ~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~- 212 (566)
...+.+..... .........|++++|++.|+++.+.. +-+...+..+...+...|+.++|.+.++++.+.....
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 76553222111 11111223477778888888877753 2244455666677777778888888887775532100
Q ss_pred ---------------chh---HHH----------------------------------HHHHHHHhcCCHHHHHHHHHhc
Q 036165 213 ---------------DAF---VVS----------------------------------SLIDMYSKCGSVEKAKKVFDEM 240 (566)
Q Consensus 213 ---------------~~~---~~~----------------------------------~l~~~~~~~g~~~~A~~~~~~~ 240 (566)
+.. .+. .....+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 000 0112233444555555555444
Q ss_pred CC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc-cHHHH------------HHHHHHHhcCCCHHHHHHHHH
Q 036165 241 VE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-NVVTW------------NTLISGFSKSGDQVMVSKLFQ 304 (566)
Q Consensus 241 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~------------~~ll~~~~~~~~~~~a~~~~~ 304 (566)
.. .+...+..+...+.+.|++++|+..|++..+..... ....+ ......+.+.|++++|...++
T Consensus 296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22 133444444455555555555555555444322110 00000 011223344455555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC--
Q 036165 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-- 382 (566)
Q Consensus 305 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 382 (566)
++.+.. +.+...+..+..++...|++++|++.|++.++.. +.+...+..+...+. .++.++|..+++.+......
T Consensus 376 ~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 376 QARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 544431 1223334444445555555555555555544432 122223333333332 23444444444433211000
Q ss_pred ------CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH
Q 036165 383 ------GDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF 453 (566)
Q Consensus 383 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 453 (566)
.....+..+...+...|++++|+..|++..+ | +...+..+...|.+.|++++|...++++.+..+.+...+
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV 532 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 0011223344555566677777776666653 3 344555566666677777777777777665544455555
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT---------EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 524 (566)
..+...+...|+.++|...++.+... ...++. ..+..+...+...|+.++|.++++.- ++++..+..+
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~L 609 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHH
Confidence 44555555666777777766654221 100000 00111222333334444444443311 1222333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 525 LGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
...+.+.|++++|+..++++++.+|+++.++..++.+|..+
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 44444444444444444444444444444444444444433
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1e-22 Score=224.60 Aligned_cols=470 Identities=10% Similarity=-0.021 Sum_probs=321.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchHH-HHHHHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCCh
Q 036165 85 IEIYIRDRALQSGKILHAQLIVSGLARLTQI-ATKLITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGYH 160 (566)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 160 (566)
...+...|++++|.+.++.+++... ++... ...+.......|+.++|++.++++.+ | +...+..+...+...|++
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 3456778888888888888877643 33222 11122222345788888888887765 2 455677888888888888
Q ss_pred HHHHHHHHHhHHCCC------------------C--------------CCcchH---------------------HHHHH
Q 036165 161 QEAVTVFHEMHIQGL------------------K--------------QNIFVI---------------------PSVLK 187 (566)
Q Consensus 161 ~~A~~~~~~m~~~g~------------------~--------------p~~~~~---------------------~~ll~ 187 (566)
++|++.++++.+... . |+.... .....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 888888887754310 0 111000 01123
Q ss_pred HHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---hhHH------------H
Q 036165 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--KDI---VAMN------------A 250 (566)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~ 250 (566)
.+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3456788899999999888864 44677888888899999999999999988743 221 1121 2
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHH---------
Q 036165 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV--------- 321 (566)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------- 321 (566)
....+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 2345677889999999999888753 3345667778888888899999999998887652 1223333333
Q ss_pred ---------------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 036165 322 ---------------------------------ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368 (566)
Q Consensus 322 ---------------------------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 368 (566)
...+...|++++|++.|++.++.. +-+...+..+...+...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 233445677777777777776643 2234455666667777777777
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Chh---------HHHHHHHHHHhcCChHHH
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER----NTV---------TWNSMIFGCANHGYCDEA 435 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~l~~~~~~~~~~~~A 435 (566)
|...++.+.+..+. +...+..+...+.+.|+.++|...++.+... +.. .+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777777664432 3444444455556677777777777766531 111 122344566777888888
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 036165 436 IELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-T 514 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 514 (566)
.++++ ..+.+...+..+...+.+.|++++|+..++++.+. -+.+...+..++.+|...|++++|.+.+++.. .
T Consensus 593 ~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88776 24556667788888999999999999999999875 24457788899999999999999999999877 2
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch------HHHHHHHHHhhcC
Q 036165 515 EP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA------NNMLLTDLYANAG 566 (566)
Q Consensus 515 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g 566 (566)
.| +...+..+..++...|++++|.+.++++++..|+++. .+..++.++..+|
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 33 5666777888899999999999999999988776553 5666788887665
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=5.9e-23 Score=192.53 Aligned_cols=434 Identities=15% Similarity=0.094 Sum_probs=290.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHh
Q 036165 80 AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYAR 156 (566)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 156 (566)
....+.+..-..|++.+|++-...+-+.+.. +....-.+-..+....+.+.....-....+ .-..+|..+.+.+-.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 4566666677788888888866666555432 222222233445555555544433322222 234578888888888
Q ss_pred cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHH
Q 036165 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF-VVSSLIDMYSKCGSVEKAKK 235 (566)
Q Consensus 157 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~ 235 (566)
.|++.+|+.+++.|.+... -....|..+..++...|+.+.|.+.+.+.++. .|+.. ..+.+.......|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 8888888888888887532 25667888888888888888888888888775 34433 33445555556677777777
Q ss_pred HHHhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 236 VFDEMVEKD---IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN-VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 236 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
.+-+..+.+ .+.|+.|.-.+-.+|+...|++-|++.... .|+ ...|..|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 766664332 245777777777777777777777766543 333 234555555555555555555555554433
Q ss_pred CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHH
Q 036165 312 EP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390 (566)
Q Consensus 312 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (566)
.| ....+..+...|-.+|..|.|+..|++.+ +..+. -+..|+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral-----------------------------------~~~P~-F~~Ay~N 325 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL-----------------------------------ELQPN-FPDAYNN 325 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHH-----------------------------------hcCCC-chHHHhH
Confidence 22 23344444444555555555555555544 43222 3556777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
|..++...|++.+|...+.+... | ...+.+.|...|...|.+++|..+|....+-.+.-...++.|...|.+.|+++
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 77777777888888887777664 3 34567777888888888888888888877765656667888888888888888
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 468 LGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+|+..++++. .+.|+ ...|+.+...|...|+.+.|.+.+.++. ..|. ....+.|...|..+|+..+|+..|+.+
T Consensus 406 ~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 406 DAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 8888888887 45666 4678888888888888888888888776 4454 456788888888888888888888888
Q ss_pred hhhCCCCchHHHHHHH
Q 036165 545 SELEPESAANNMLLTD 560 (566)
Q Consensus 545 ~~~~p~~~~~~~~l~~ 560 (566)
+++.||.|.++.+|.-
T Consensus 483 LklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLH 498 (966)
T ss_pred HccCCCCchhhhHHHH
Confidence 8888888888877754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=3.8e-20 Score=195.24 Aligned_cols=475 Identities=11% Similarity=-0.020 Sum_probs=269.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHH
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--T-NIHRWIALT 151 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 151 (566)
|-+++.+..+.+.+...|++++|+...+..++... .|...+..+ +..++.++|..+++++.+ | +...+..+.
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L----a~i~~~~kA~~~ye~l~~~~P~n~~~~~~la 149 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL----AAIPVEVKSVTTVEELLAQQKACDAVPTLRC 149 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH----HHhccChhHHHHHHHHHHhCCCChhHHHHHH
Confidence 34455566666666666666666666666666542 233333322 112566666666666543 2 233333333
Q ss_pred HH--------HHhcCChHHHHHHHHHhHHCCCCCCcchHHHH-HHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 036165 152 GA--------YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV-LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222 (566)
Q Consensus 152 ~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 222 (566)
.. |.+. ++|.+.++ .......|+..+.... .+.+...|+++.|.+++.++.+.+ +.+......|..
T Consensus 150 ~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ 224 (987)
T PRK09782 150 RSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFD 224 (987)
T ss_pred HHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 33 4433 33333333 2222233334444444 667777788888888888888776 334444555666
Q ss_pred HHHh-cCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCC-ccHHHHH----------------
Q 036165 223 MYSK-CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK-PNVVTWN---------------- 284 (566)
Q Consensus 223 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~---------------- 284 (566)
+|.. .++ +++..+++...+.+...+..++..|.+.|+.++|.++++++...... |...++.
T Consensus 225 ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred HHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 6666 355 77777766544557777788888888888888888888877432111 2222211
Q ss_pred --------------HHHHHHhcCCCHHHHH--------------------------------------------------
Q 036165 285 --------------TLISGFSKSGDQVMVS-------------------------------------------------- 300 (566)
Q Consensus 285 --------------~ll~~~~~~~~~~~a~-------------------------------------------------- 300 (566)
.++..+.+.++++.++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1122223333333222
Q ss_pred -------------HHHHHHHHc-C-CCCChhhHHHHHHHHHhcCC---hhHHHHH----------------------HHH
Q 036165 301 -------------KLFQLMRAK-G-VEPDVVSWTSVISGLVHNFC---NDEAFDT----------------------FKE 340 (566)
Q Consensus 301 -------------~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~ 340 (566)
++++..... + ...+.....-++..|.+.+. ..++..+ ++.
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 222222110 0 00011222233344443333 1122111 000
Q ss_pred HHHC-CC-CC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 036165 341 MLSQ-GF-CP--TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R 414 (566)
Q Consensus 341 m~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 414 (566)
.... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+.+.|++++|...|+++.. +
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p 540 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM 540 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 0000 01 11 23334444444443 56666666666665543 3333333344455677888888888876654 4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+...+..+..++.+.|+.++|...+++..+..+.+...+..+.......|++++|...+++..+. .|+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 44455566667777888888888888777655444444444444555668888888888888754 566777778888
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++.+.|++++|...+++.. ..| +...+..+..++...|++++|+..++++++.+|+++.++..++.+|..+|
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 8888888888888888776 334 46666777777888888888888888888888888888888888887765
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.9e-21 Score=181.33 Aligned_cols=392 Identities=18% Similarity=0.211 Sum_probs=298.0
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHH
Q 036165 87 IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEA 163 (566)
Q Consensus 87 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 163 (566)
++....+.+...+--...++.. +.-..+|..+...+-..|++++|..+++.+.+ ..+..|..+..++..+|+.+.|
T Consensus 91 i~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 91 IFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCccc
Confidence 3333444544444444444433 24557888899999999999999999998876 3567899999999999999999
Q ss_pred HHHHHHhHHCCCCCCcchHHH-HHHHHcccCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 164 VTVFHEMHIQGLKQNIFVIPS-VLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFVVSSLIDMYSKCGSVEKAKKVFDEMV 241 (566)
Q Consensus 164 ~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 241 (566)
.+.|.+..+ +.|+.....+ +...+-..|++.+|...+.+.++.. |. ...|+.|...+-.+|+...|+..|++..
T Consensus 170 ~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 170 VQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred HHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 999999988 4566554433 3333446799999999999998863 43 4578899999999999999999999996
Q ss_pred CCC---hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-hh
Q 036165 242 EKD---IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN-VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VV 316 (566)
Q Consensus 242 ~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 316 (566)
.-| ...|-.|...|...+.+++|+..|.+.... .|+ .+.+..+...|...|+++.|...+++.++. .|+ ..
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPD 321 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchH
Confidence 544 357999999999999999999999987764 454 567888888999999999999999999876 443 67
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.|+.|..++-..|+..+|...|.+.+.- .|+ .....+.|...|.
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~----------------------------------hadam~NLgni~~ 365 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRL--CPN----------------------------------HADAMNNLGNIYR 365 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHh--CCc----------------------------------cHHHHHHHHHHHH
Confidence 8999999999999999999999888754 222 3445566777777
Q ss_pred hcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 397 KCGFISEARTLFDKMSE--RN-TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
..|.+++|.++|....+ |. ....+.|...|.++|+.++|+..|++..+-.+.-...|+.+...|...|+.+.|++.+
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 77777777777776665 32 3456777777888888888888888777755555567888888888888888888888
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHH
Q 036165 474 NMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLG 526 (566)
Q Consensus 474 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~ 526 (566)
.+++. +.|. .+..+.|...|...|+..+|.+-+++.. .+|| +..+-.++-
T Consensus 446 ~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 446 TRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 87773 4554 3567778888888888888888887766 4554 344444443
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.1e-18 Score=184.39 Aligned_cols=462 Identities=11% Similarity=0.056 Sum_probs=325.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCc---chHHHHHHHHHhcCChHHHH
Q 036165 88 YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI---HRWIALTGAYARRGYHQEAV 164 (566)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~ 164 (566)
+...|++++|...++.+++..+. ++.++..+..+|...|+.++|+..+++..+.++ ..+..+ ..+ +++.+|.
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHH
Confidence 33459999999999999998754 488899999999999999999999998877433 333333 222 8999999
Q ss_pred HHHHHhHHCCCCCC-cchHHHHHHHH-----cccCChhHHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHH
Q 036165 165 TVFHEMHIQGLKQN-IFVIPSVLKAC-----GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL-IDMYSKCGSVEKAKKVF 237 (566)
Q Consensus 165 ~~~~~m~~~g~~p~-~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~ 237 (566)
.+++++... .|+ ...+..+.... ....+.+.|.+.++ .......|+..+.... ..+|.+.|++++|++.+
T Consensus 129 ~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999986 344 33444444430 12334466666666 4333334445555555 89999999999999999
Q ss_pred HhcCCC---ChhhHHHHHHHHHH-cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-
Q 036165 238 DEMVEK---DIVAMNAMVSGYVQ-RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE- 312 (566)
Q Consensus 238 ~~~~~~---~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 312 (566)
.++.+. +......|...|.. .++ +++..+++. .++-+......+...+.+.|+.++|.++++++...-..
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999654 34446667778887 366 778777553 33467788889999999999999999999987543111
Q ss_pred C-------------------------------------------------------------------------------
Q 036165 313 P------------------------------------------------------------------------------- 313 (566)
Q Consensus 313 ~------------------------------------------------------------------------------- 313 (566)
|
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 1
Q ss_pred --------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHccCc---hHHHHHH--
Q 036165 314 --------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-G-FCPTSATISSILPACASAAN---MRRGKEI-- 372 (566)
Q Consensus 314 --------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~ll~~~~~~~~---~~~a~~~-- 372 (566)
+......+.-.....|+.++|..+|+..... + -.++......++..+.+.+. ..++..+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 1111111111234556677777777776541 1 22333344466666666655 2222211
Q ss_pred --------------------HHHHHHh-CC-CC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHH
Q 036165 373 --------------------HGCAIVM-GV-EG--DLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGC 426 (566)
Q Consensus 373 --------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~ 426 (566)
....... +. ++ +...+..+..++.. ++.++|...+.+... |+......+...+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al 519 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQA 519 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 1111111 11 22 56677777777776 788889997776664 5544333344455
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 506 (566)
...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+. . +.+...+..+...+.+.|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 6899999999999997654 455556777788899999999999999999875 2 223333444444555679999999
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 507 EMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 507 ~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
..+++.. ..|+...|..+..++.+.|++++|+..++++++.+|+++.++..++.++...|
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999988 56888899999999999999999999999999999999999999999998775
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=4.6e-19 Score=183.89 Aligned_cols=399 Identities=10% Similarity=-0.001 Sum_probs=280.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 226 (566)
+......+.+.|++++|+..|++... ..|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44566677777888888888887766 35566677777777777788888888888877754 3345567777777888
Q ss_pred cCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHhhh---------------------------CCC
Q 036165 227 CGSVEKAKKVFDEMVEKD---IVAMNAMVSGYVQRGLATEALNLVEEIGT---------------------------PRV 276 (566)
Q Consensus 227 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------------------------~~~ 276 (566)
.|++++|...|..+...+ ......++..+........+...++.-.. ...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 888888777665542111 11111111111100000111111110000 000
Q ss_pred CccH-HHHHHHHHH---HhcCCCHHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036165 277 KPNV-VTWNTLISG---FSKSGDQVMVSKLFQLMRAKG-VEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350 (566)
Q Consensus 277 ~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 350 (566)
.+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+..|++.++.. +-..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0100 001111111 123467899999999988764 223 45678888888999999999999999998753 2335
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHH
Q 036165 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCA 427 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 427 (566)
..+..+...+...|++++|...++.+++..+. +..++..+...+...|++++|...|++..+ | +...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 57888888899999999999999999887543 678888999999999999999999998875 3 4667778888999
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHHHhc
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-E-------HYACMVDLLGRA 499 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~ 499 (566)
+.|++++|+..|++..+..+.+...++.+..++...|++++|++.|++..+. .|+. . .++.....+...
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999877778889999999999999999999999998864 3321 1 112222334457
Q ss_pred CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 500 GRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 500 g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
|++++|.+.+++.. ..| +...+..+...+.+.|++++|+..++++.++.+....
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999876 344 4557888999999999999999999999998876444
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.4e-19 Score=176.24 Aligned_cols=463 Identities=13% Similarity=0.100 Sum_probs=362.3
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCC------cchHHHHHHHHHhcCChHHHHH
Q 036165 92 RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN------IHRWIALTGAYARRGYHQEAVT 165 (566)
Q Consensus 92 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~ 165 (566)
..+..+..++...-... ..+|.+.+.|...|.-.|++..+..+.+.+...+ ..+|.-+.++|...|++++|..
T Consensus 250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34455666666665554 3688899999999999999999999988776532 3468889999999999999999
Q ss_pred HHHHhHHCCCCCCcc--hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC----CHHHHHHHHHh
Q 036165 166 VFHEMHIQGLKQNIF--VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG----SVEKAKKVFDE 239 (566)
Q Consensus 166 ~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 239 (566)
.|.+..+. .++.+ .+-.+.+.+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 99777664 44543 45567888999999999999999999874 666778888888887775 56777777777
Q ss_pred cCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHh----hhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---
Q 036165 240 MVEK---DIVAMNAMVSGYVQRGLATEALNLVEEI----GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK--- 309 (566)
Q Consensus 240 ~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 309 (566)
..++ |...|-.+...+....-+.. +..|... ...+..+.+...|.+.......|+++.|...|......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 7554 55677777766666554444 6666554 34565688899999999999999999999999988654
Q ss_pred CCCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 036165 310 GVEPD------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVE 382 (566)
Q Consensus 310 ~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 382 (566)
...++ +.+--.+...+-..++.+.|.+.|+...+. .|.... |..++......++..+|...++.+.... .
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 12222 223344667777788999999999999886 455443 4444444445678888999998888754 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHhhhc
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCAN------------HGYCDEAIELFNQMEER 445 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~ 445 (566)
.++..+..+.+.+.+...+..|.+-|..+.+ +|..+.-+|...|.+ .+..++|+++|.++.+.
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 3666777788899999999989887766653 465666666665542 34568899999999998
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCCHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS----TEPDLFVW 521 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~ 521 (566)
.|.|...=|.+.-+++..|++++|..+|.++.+. .. -...+|-.+.++|..+|++-.|.++|+... .+.++.+.
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA-TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHH-Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 8889999999999999999999999999999987 32 355679999999999999999999999876 34688899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..|.+++.+.|.+.+|...+..++...|.++.+..+++-+..+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.1e-19 Score=179.08 Aligned_cols=298 Identities=14% Similarity=0.078 Sum_probs=157.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhc
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD---AFVVSSLIDMYSKC 227 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~ 227 (566)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 444566777777777777777653 22344666666667777777777777777666432111 13455556666666
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccH----HHHHHHHHHHhcCCCHHHHH
Q 036165 228 GSVEKAKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV----VTWNTLISGFSKSGDQVMVS 300 (566)
Q Consensus 228 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~ 300 (566)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666666643 23445566666666666666666666665543322111 12233344444455555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 036165 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 380 (566)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++. +.+
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-----------------------------------~~~ 244 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVE-----------------------------------EQD 244 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------------------------HHC
Confidence 5555544431 1123344444444444455555555444444 332
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 036165 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLT 458 (566)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 458 (566)
......++..++.+|.+.|++++|...++++.+ |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~~l~~ 323 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRGFHRLLD 323 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHHHHHHHH
Confidence 222233444555555555555555555555443 44444455555556666666666666655543 344455555554
Q ss_pred HHhc---cCChHHHHHHHHHhHHhcCCCCChh
Q 036165 459 ACCH---VGLVELGQRLFNMMQEKYKIMPRTE 487 (566)
Q Consensus 459 ~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 487 (566)
.+.. .|+.+++..+++++.++ ++.|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 4432 33556666666666555 5555443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.4e-19 Score=178.41 Aligned_cols=286 Identities=14% Similarity=0.128 Sum_probs=186.6
Q ss_pred HHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChh
Q 036165 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCND 332 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 332 (566)
...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444555555555544432 12233444444445555555555555554444321111 123444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc----HhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD----LHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 333 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
+|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555431 23344555555555555555555555555555433221 123455677778888888888888
Q ss_pred HhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 036165 409 DKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD-HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484 (566)
Q Consensus 409 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 484 (566)
+++.+ | +...+..+...+.+.|++++|.++++++.+..+.+ ..+++.++.++...|++++|...++++.+. .|
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p 280 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YP 280 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC
Confidence 88764 3 35567778888999999999999999988763333 456788889999999999999999998865 56
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKN---HGNIELAEIAAKHLSE 546 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 546 (566)
+...+..++..+.+.|++++|..+++++. ..|+..+++.++..+.. .|+.+++..+++++++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 76777888999999999999999998876 55888888888877664 5588888888888875
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.1e-18 Score=179.02 Aligned_cols=379 Identities=13% Similarity=0.021 Sum_probs=280.2
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHc
Q 036165 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQR 258 (566)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 258 (566)
+......+.+.|+++.|...|++.++. .|+...|..+..+|.+.|++++|++.++...+. +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344566678899999999999999875 567888999999999999999999999998543 556888999999999
Q ss_pred CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------HH------------c--CC
Q 036165 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-------------RA------------K--GV 311 (566)
Q Consensus 259 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------------~~------------~--~~ 311 (566)
|++++|+..|......+-. +......++..+........+...++.- .. . ..
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999888766543211 1111111111111100001111111000 00 0 00
Q ss_pred CCC-hhhHHHHHHH---HHhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH
Q 036165 312 EPD-VVSWTSVISG---LVHNFCNDEAFDTFKEMLSQG-FCP-TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385 (566)
Q Consensus 312 ~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 385 (566)
.+. ...+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++..++..+. ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 000 0011111111 122467899999999998765 233 3456777788888999999999999999886543 46
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
..+..+...+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+..+.+...+..+..++.+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 6788899999999999999999998765 4567889999999999999999999999999877788889999999999
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH-HH-------HHHHHHHHHhcCC
Q 036165 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDL-FV-------WGALLGACKNHGN 533 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~-------~~~l~~~~~~~g~ 533 (566)
.|++++|+..++++... .+.++..++.+..++...|++++|.+.|++.. ..|+. .. ++..+..+...|+
T Consensus 446 ~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999999874 34457889999999999999999999999976 33321 11 1112223345699
Q ss_pred HHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 534 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+++|...++++++++|++...+..++.+|..+|
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999998876
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.6e-18 Score=181.50 Aligned_cols=407 Identities=9% Similarity=0.011 Sum_probs=251.7
Q ss_pred CchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHH
Q 036165 111 RLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187 (566)
Q Consensus 111 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 187 (566)
.++....-.+......|+.++|++++.+... .+...+..+...+...|++++|.++|++..+.. +.+......+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445555566666677777777777766543 233346666677777777777777777766542 223444555556
Q ss_pred HHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHH
Q 036165 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a 264 (566)
.+...|+.++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 6666777777777777776652 33444 66666666677777777777766633 2 334455556666666666667
Q ss_pred HHHHHHhhhCCCCccHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh---hHHH
Q 036165 265 LNLVEEIGTPRVKPNVV------TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN---DEAF 335 (566)
Q Consensus 265 ~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~ 335 (566)
+..++.... .|+.. ....++......+ ....+++ ++|+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~Al 216 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRAL 216 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHHH
Confidence 666665443 22210 0000111110000 0111122 5566
Q ss_pred HHHHHHHHC-CCCCCHH-HHH----HHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 336 DTFKEMLSQ-GFCPTSA-TIS----SILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 336 ~~~~~m~~~-~~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
+.++.+.+. ...|+.. .+. ..+.++...|++++|+..++.+.+.+.+ |+. ....+..+|...|++++|+..|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 666666543 1122211 111 1123334556667777777766665432 221 2222466777777777777777
Q ss_pred HhcCC--CC-----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC------------CC---HHHHHHHHHHHhccCCh
Q 036165 409 DKMSE--RN-----TVTWNSMIFGCANHGYCDEAIELFNQMEERKK------------LD---HLSFTAVLTACCHVGLV 466 (566)
Q Consensus 409 ~~~~~--~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------~~---~~~~~~l~~~~~~~g~~ 466 (566)
+++.+ |. ......+..++...|++++|.++++++.+..+ |+ ...+..+...+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 77654 21 12344555567777888888888777776532 22 12456677788899999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
++|+++++++... .+.+...+..++.++...|++++|++.++++. ..|+ ...+...+..+...|++++|+.+++++
T Consensus 376 ~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 376 PQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999874 45567788899999999999999999999987 4464 667777778889999999999999999
Q ss_pred hhhCCCCchHHH
Q 036165 545 SELEPESAANNM 556 (566)
Q Consensus 545 ~~~~p~~~~~~~ 556 (566)
++..|+++.+..
T Consensus 454 l~~~Pd~~~~~~ 465 (765)
T PRK10049 454 VAREPQDPGVQR 465 (765)
T ss_pred HHhCCCCHHHHH
Confidence 999999987654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=4.4e-18 Score=175.88 Aligned_cols=350 Identities=13% Similarity=0.014 Sum_probs=181.0
Q ss_pred hhcCChHHHHHHhccCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhH
Q 036165 124 TECQNIHHARMLFDEIPKT------NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197 (566)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 197 (566)
.+..+|+..--+|...++. +..-.-.++..+.++|++++|+.+++........ +......++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3456666666666655541 2223444566667777777777777777665333 23334444455556777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhC
Q 036165 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274 (566)
Q Consensus 198 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 274 (566)
|.+.++++.+.. +.+...+..+...+...|++++|...+++... .+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 777777777653 34455566666666777777777777766632 23445666666666666666666666665443
Q ss_pred CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 036165 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354 (566)
Q Consensus 275 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 354 (566)
... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|+..++++.+.. +.+...+.
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 211 12222222 2345566666666666665544222233333344455555666666666666655432 22233333
Q ss_pred HHHHHHHccCchHH----HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 036165 355 SILPACASAANMRR----GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430 (566)
Q Consensus 355 ~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (566)
.+...+...|++++ |...++.+.+..+. +.. .+..+...+...|
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~-------------------------------a~~~lg~~l~~~g 298 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVR-------------------------------IVTLYADALIRTG 298 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHH-------------------------------HHHHHHHHHHHCC
Confidence 44444444444442 34444444433221 333 4444444555555
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
++++|...+++..+..+.+...+..+..++...|++++|...++++... .|+. ..+..+..++...|++++|.+.|
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555544443334444444455555555555555555554432 2222 12222334445555555555555
Q ss_pred HhcC
Q 036165 510 KTMS 513 (566)
Q Consensus 510 ~~~~ 513 (566)
+++.
T Consensus 376 ~~al 379 (656)
T PRK15174 376 EHYI 379 (656)
T ss_pred HHHH
Confidence 5443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.1e-17 Score=172.96 Aligned_cols=352 Identities=8% Similarity=-0.042 Sum_probs=276.1
Q ss_pred HHhcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHH
Q 036165 88 YIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQE 162 (566)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 162 (566)
+.++.+|+.-.-++....++- -..+..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 345677877666665554431 111222234456778888999999999987754 345566677778888999999
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 036165 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV- 241 (566)
Q Consensus 163 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 241 (566)
|+..|+++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999863 2345677778888899999999999999999864 4567788889999999999999999998773
Q ss_pred -CC-ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 036165 242 -EK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319 (566)
Q Consensus 242 -~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 319 (566)
.| +...+..+ ..+...|++++|...++.+......++......+...+...|++++|...++.+.+.. +.+...+.
T Consensus 173 ~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 173 EVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred hCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 23 33344343 3588899999999999998776434455555666788899999999999999998764 34677888
Q ss_pred HHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 036165 320 SVISGLVHNFCNDE----AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395 (566)
Q Consensus 320 ~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (566)
.+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...++.+.+..+. +......+..+|
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 89999999999986 899999998763 445678889999999999999999999999987654 566777889999
Q ss_pred HhcCCHHHHHHHHHhcCC--CChhH-HHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 396 AKCGFISEARTLFDKMSE--RNTVT-WNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
.+.|++++|...|+++.+ |+... +..+..++...|+.++|...|++..+.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999998874 54433 344567788899999999999998876
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=5.3e-17 Score=171.62 Aligned_cols=426 Identities=10% Similarity=-0.015 Sum_probs=265.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIA 149 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 149 (566)
..+.++......+......|+.++|.+++....... +.+...+..+...+...|++++|..+|++..+ .+...+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 357778888999999999999999999999998733 34555688899999999999999999998543 45667888
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
++..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998862 33444 7788888899999999999999999975 4456666778888889999
Q ss_pred HHHHHHHHHhcCCCChh--------hHHHHHHHHH-----HcCCh---hHHHHHHHHhhhC-CCCccHH-HH----HHHH
Q 036165 230 VEKAKKVFDEMVEKDIV--------AMNAMVSGYV-----QRGLA---TEALNLVEEIGTP-RVKPNVV-TW----NTLI 287 (566)
Q Consensus 230 ~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~~~p~~~-~~----~~ll 287 (566)
.+.|++.++.... ++. ....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 9999999998865 221 1122222221 11223 6677777777643 1122211 11 1112
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcc
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAKGVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP---TSATISSILPACASA 363 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~ 363 (566)
.++...|++++|...|+.+.+.+.. |+. .-..+..+|...|++++|+..|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445567777777777777665422 221 11224556777777777777777766532111 122344445555666
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN---TVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
|++++|..+++.+.+..+. ....+.. ....|+ ...+..+...+...|+.++|++.++
T Consensus 324 g~~~eA~~~l~~~~~~~P~-~~~~~~~-------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPP-FLRLYGS-------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred ccHHHHHHHHHHHhhcCCc-eEeecCC-------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666554211 0000000 000011 1123334445555566666666666
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH
Q 036165 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDL 518 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 518 (566)
++....|.+...+..+...+...|++++|++.++++.+. .|+ ...+..++..+.+.|++++|..+++++. ..|+.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l---~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL---EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 665555555555666666666666666666666665543 233 3444455555556666666666666555 33444
Q ss_pred HHHHHHHHH
Q 036165 519 FVWGALLGA 527 (566)
Q Consensus 519 ~~~~~l~~~ 527 (566)
.....+-+.
T Consensus 461 ~~~~~~~~~ 469 (765)
T PRK10049 461 PGVQRLARA 469 (765)
T ss_pred HHHHHHHHH
Confidence 333333333
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.1e-16 Score=165.85 Aligned_cols=455 Identities=10% Similarity=0.038 Sum_probs=292.4
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCc-chHHHH--
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI-HRWIAL-- 150 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l-- 150 (566)
.|..+.+-..-.-...+.|++..|...+..+++......+.++ .++..+...|+.++|+..+++...++. ..+..+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 3444554444445566788888888888888877643223344 777777777888888888887776533 333333
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
...+...|++++|+++|+++.+.... +...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 44667778888888888888776322 3445555566667777777777777777664 34444444444444445555
Q ss_pred HHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036165 231 EKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307 (566)
Q Consensus 231 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (566)
.+|++.++++.+ | +...+..+..++.+.|-...|.++..+-... .+......+- .+.+.+..+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~--------~~~~a~~vr--- 251 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLE--------RDAAAEQVR--- 251 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHH--------HHHHHHHHh---
Confidence 557777777633 2 4455666666777777777776665542211 0111111100 011111111
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 036165 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTS-A----TISSILPACASAANMRRGKEIHGCAIVMGV 381 (566)
Q Consensus 308 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 381 (566)
.+..++..- -. +---.+.|+.-++.+... +-.|.. . ...-.+.++...+++.+++..++.+...+.
T Consensus 252 -~a~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 252 -MAVLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred -hcccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 111110000 00 000124556666665542 111321 1 222445567778888888888888887776
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-----
Q 036165 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSER---------NTVTWNSMIFGCANHGYCDEAIELFNQMEERKK----- 447 (566)
Q Consensus 382 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 447 (566)
+....+..++.++|...+++++|..+++.+... +......|.-+|...+++++|..+++++.+..+
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 656667778888888888888888888877531 222246677888888888888888888887422
Q ss_pred -------CCH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC
Q 036165 448 -------LDH---LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP 516 (566)
Q Consensus 448 -------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 516 (566)
||+ ..+..++..+...|++.+|++.++.+... -+-|......+.+.+...|.+.+|++.++.+. ..|
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 222 23555677788999999999999999764 46678888999999999999999999998766 344
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 517 -DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 517 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
+..+....+.++...|++++|..+.+.+++..|+++.+..
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 5667778888888999999999999999999999986543
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.9e-17 Score=159.38 Aligned_cols=420 Identities=14% Similarity=0.069 Sum_probs=302.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCC--CCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHH
Q 036165 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK--QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219 (566)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 219 (566)
.|++..+.|.+-|...|++..+..+...+...... .-...|-.+.+++-..|++++|...|.+..+....-....+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 35666777777777788888888888777664311 1233466677788888888888888888776542222334456
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcC----ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRG----LATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 292 (566)
+...+.+.|+++.+...|+.+.. | +..+...|...|+..+ ..+.|..++.+....- +.|...|..+...+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 78888888888888888888833 2 4456666666666664 4566666666655432 4456677666665554
Q ss_pred CCCHHHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHH
Q 036165 293 SGDQVMVSKLFQLM----RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ---GFCPTS------ATISSILPA 359 (566)
Q Consensus 293 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~ll~~ 359 (566)
. +...++.++..+ ...+..+.+...|.+...+...|++++|...|+..... ...+|. .+-..+...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4 444446666544 34555677888899999999999999999999888755 122333 233345555
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHH
Q 036165 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAI 436 (566)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 436 (566)
.-..++.+.|.+.+..+.+..+. -+..|.-++.+....+...+|...+..+.. .++..+..+...+.....+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 56677889999999998886432 334444444444455788889999988775 56677777888888888899999
Q ss_pred HHHHHhhhc--CCCCHHHHHHHHHHHhc------------cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 437 ELFNQMEER--KKLDHLSFTAVLTACCH------------VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 437 ~~~~~~~~~--~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
+-|+.+.+. ..+|..+..+|.+.|.. .+..+.|+++|.++... .+-|...-|.+.-+++..|++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCc
Confidence 988888776 55688887788776653 34567888888888763 345667778899999999999
Q ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCCCchHHHHHHHHHhhcC
Q 036165 503 AEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL--EPESAANNMLLTDLYANAG 566 (566)
Q Consensus 503 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 566 (566)
.+|..+|.++. ......+|..+..+|...|++-.|+++|+..++. .-+++++...|+.++.+.|
T Consensus 663 ~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 663 SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 99999999987 2345678999999999999999999999999973 3467899999999998765
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=7.4e-18 Score=153.01 Aligned_cols=483 Identities=13% Similarity=0.065 Sum_probs=303.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC----CCcc-hHH
Q 036165 78 PAAYSERIEIYIRDRALQSGKILHAQLIVS----GLARLTQIATKLITFYTECQNIHHARMLFDEIPK----TNIH-RWI 148 (566)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~ 148 (566)
...+...+.-.-..|+-+.+..-+++-.-. ++..+-.+...|.+-|.......+|...++-+.+ ||.- .--
T Consensus 162 ~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkm 241 (840)
T KOG2003|consen 162 CGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKM 241 (840)
T ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeee
Confidence 344555555555566666555555432211 2222333344445555555556666666665544 2221 112
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHCCCCCCcc----hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 036165 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF----VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMY 224 (566)
Q Consensus 149 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 224 (566)
.+.+.+.+..++.+|++.|+-....-...+.. ..+.+...+.+.|.++.|...|+...+. .|+..+--.|+-++
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICA 319 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhh
Confidence 23445556666666666666555432112222 2233333455666666666666666654 35555444455555
Q ss_pred HhcCCHHHHHHHHHhcCC----------------CChhhHH-----HHHHHHHHcCC--hhHHHHHHHHhhhCCCCccHH
Q 036165 225 SKCGSVEKAKKVFDEMVE----------------KDIVAMN-----AMVSGYVQRGL--ATEALNLVEEIGTPRVKPNVV 281 (566)
Q Consensus 225 ~~~g~~~~A~~~~~~~~~----------------~~~~~~~-----~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 281 (566)
..-|+.++..+.|.+|.. |+....| ..+.-.-+.++ .++++-.--++...-+.|+-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 556666666666666621 0111111 11122222111 111111111111111122210
Q ss_pred H---------------------HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHHHHH
Q 036165 282 T---------------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH--NFCNDEAFDTF 338 (566)
Q Consensus 282 ~---------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~ 338 (566)
. -..-...+.+.|+++.|.+++....+..-......-+.|-..+.- -.++..|..+-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 0 001122466788888888888887665433333333333322222 33566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 036165 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RN 415 (566)
Q Consensus 339 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 415 (566)
+..+... +-+....+.-.......|++++|.+.+++.+...-......|| +.-.+...|++++|...|-++.. .+
T Consensus 480 d~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 480 DIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 6655432 3344444444445567789999999999998876554444454 34456788999999999987764 67
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
+...-.+...|....+...|++++-+....++.|+....-|...|-+.|+-.+|.+.+-.--. -++-+.++...|..-
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHH
Confidence 777778888999999999999999999888999999999999999999999999988765543 466788999999999
Q ss_pred HHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGAC-KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
|....-+++|...|++.. .+|+..-|..++..| .+.|++++|..+|+...+..|++...+..|..+....|
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999999999876 789999999888654 68999999999999999999999999999998876554
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=4.4e-15 Score=154.10 Aligned_cols=428 Identities=9% Similarity=-0.011 Sum_probs=260.8
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCC---CcchHHHH
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT---NIHRWIAL 150 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 150 (566)
.|.++.....++..+...|+.+.|...++..+.. -.........+...|...|++++|..+|+++.+. |...+..+
T Consensus 64 ~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 64 GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3454333448888889999999999999999821 1122333334466888999999999999998762 45667788
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
+..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++++.. +.+...+..+.....+.|-.
T Consensus 143 a~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 143 IMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred HHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCc
Confidence 88999999999999999999875 5666666555444545566666999999999985 55777888899999999999
Q ss_pred HHHHHHHHhcCCC-ChhhHHH----HHHHHHHcC---------C---hhHHHHHHHHhhh-CCCCccH-----HHHHHHH
Q 036165 231 EKAKKVFDEMVEK-DIVAMNA----MVSGYVQRG---------L---ATEALNLVEEIGT-PRVKPNV-----VTWNTLI 287 (566)
Q Consensus 231 ~~A~~~~~~~~~~-~~~~~~~----li~~~~~~g---------~---~~~a~~~~~~m~~-~~~~p~~-----~~~~~ll 287 (566)
..|.++..+-+.- +...+.. .+.-.++.+ + .+.|+.-++.+.. .+-.|.. ....-.+
T Consensus 220 ~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl 299 (822)
T PRK14574 220 EPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRL 299 (822)
T ss_pred HHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 9999988876431 1111111 111111111 1 1223333333332 1111211 1112233
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHc
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-----FCPTSATISSILPACAS 362 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~ 362 (566)
-++...|+..++.+.++.+...+.+....+-..+.++|...+++++|+.+|+++.... ..++......|.-++..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 4445555555555555555555444333344555555555555555555555554322 01122223344444444
Q ss_pred cCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh-HHHHHHHHHHhcCChHHHHHHHHH
Q 036165 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV-TWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
.+++++|..+++.+.+..+ .-...+ . .. .+...||-. .+..++..+...|+..+|++.+++
T Consensus 380 ~e~~~~A~~~l~~~~~~~p-~~~~~~-------~---~~-------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTP-YQVGVY-------G---LP-------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred cccHHHHHHHHHHHHhcCC-cEEecc-------C---CC-------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444443211 000000 0 00 000112211 233456667788889999999998
Q ss_pred hhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH
Q 036165 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF 519 (566)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 519 (566)
+....|-|......+...+...|.+.+|++.++.+.. +.|+ ..+....+.++...|++++|..+.++.. ..|+..
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 8777888888888888888889999999988877664 3444 4566677788888889998888887766 345544
Q ss_pred HHHHHHH
Q 036165 520 VWGALLG 526 (566)
Q Consensus 520 ~~~~l~~ 526 (566)
....|-+
T Consensus 519 ~~~~l~r 525 (822)
T PRK14574 519 PSQELDR 525 (822)
T ss_pred hHHHHHH
Confidence 4444333
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=1.9e-13 Score=130.20 Aligned_cols=464 Identities=13% Similarity=0.063 Sum_probs=349.4
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 036165 89 IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVT 165 (566)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 165 (566)
...-..++|+.++.++++.- +.+.. |.-+|++...++.|.+++....+ .+...|.+-...=-.+|+.+....
T Consensus 387 VelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 33445666777777777763 22333 44566777778888888876654 477788887777778888888877
Q ss_pred HHHH----hHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 166 VFHE----MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT--DAFVVSSLIDMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 166 ~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (566)
++.+ +...|+..+..-|..=...|-..|..-.+..+..-.+..|+.. -..+|..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 7655 3456788888888888888888888888999988888888654 345788888889999999999999988
Q ss_pred cCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 036165 240 MVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV 316 (566)
Q Consensus 240 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 316 (566)
..+ .+...|...+..=-..|..++...+|++.... ++-....|......+-..|+...|..++....+.. +.+..
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnsee 619 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEE 619 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHH
Confidence 754 35566777777767788889999999888764 23334445555566677899999999999888763 33677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.|-+-+..-..+..+++|..+|.+.... .|+...|..-+..-.-.++.++|.++++..++.- +.-...|..+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHH
Confidence 8888888888999999999999988764 6777777777777777889999999998888753 334667888889999
Q ss_pred hcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 397 KCGFISEARTLFDKMSE--RN-TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
+.++++.|...|..-.+ |+ +..|-.+...--+.|+.-.|..++++..-..+.+...|...|+.-.+.|..+.|..+.
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999887775 54 4567777777778889999999999988888888899999999999999999999988
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
.++.+. ++.+...|.--|....+.++-....+.+++. +-|+.+..++...+....++++|..-|+++++.+|++..
T Consensus 777 akALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 777 AKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 888774 5555666766666666666655555555554 345566666666677777777777777777777777777
Q ss_pred HHHHHHHHHhhcC
Q 036165 554 NNMLLTDLYANAG 566 (566)
Q Consensus 554 ~~~~l~~~~~~~g 566 (566)
++..+-..+...|
T Consensus 853 ~wa~fykfel~hG 865 (913)
T KOG0495|consen 853 AWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHhC
Confidence 7666666555544
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.3e-14 Score=129.75 Aligned_cols=413 Identities=15% Similarity=0.197 Sum_probs=282.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC--h-------------------------HHH
Q 036165 80 AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN--I-------------------------HHA 132 (566)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~-------------------------~~A 132 (566)
+=+.+++. ..+|.+.++.-++++|.+.|.+.++.+...|++.-+-.+. + +-|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 33555554 4578899999999999999998888888777766433221 1 112
Q ss_pred HHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC
Q 036165 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 212 (566)
.-+|+ ....+..++..+|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-. ..+++..+|+...+.|
T Consensus 197 dL~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence 22222 233456789999999999999999999999999888899999999999875433 3388999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHH----Hhc----CCCChhhHHHHHHHHHHcCChhH-HHHHHHHh----hhCCCCc-
Q 036165 213 DAFVVSSLIDMYSKCGSVEKAKKVF----DEM----VEKDIVAMNAMVSGYVQRGLATE-ALNLVEEI----GTPRVKP- 278 (566)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m----~~~~~~p- 278 (566)
|..++|+++.+..+.|+++.|.+.+ .+| .+|...+|..+|..+++.++..+ +..++.++ ..+..+|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999999988766544 444 66888999999999999887744 44444443 3333333
Q ss_pred ---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 036165 279 ---NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG----VEPD---VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348 (566)
Q Consensus 279 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 348 (566)
|...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.|.-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 45677888899999999999999887765421 2222 2345567777888888999999999998887889
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHH
Q 036165 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV---TWNSMIFG 425 (566)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~ 425 (566)
+..+...++.+....+.++-..++|..++..|..........++..+++..- .|+.. -+.....-
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAK 499 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999988866555444444444443320 12111 11111111
Q ss_pred HHhcCChHHHH-HHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHHhcCC
Q 036165 426 CANHGYCDEAI-ELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA---CMVDLLGRAGR 501 (566)
Q Consensus 426 ~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~ 501 (566)
|+. ++.++. ..-.++.. ..-.....+.++-.+.+.|..++|.+++..+..+..-.|.....+ -+++.-.+.++
T Consensus 500 ~aa--d~~e~~e~~~~R~r~-~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~s 576 (625)
T KOG4422|consen 500 CAA--DIKEAYESQPIRQRA-QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNS 576 (625)
T ss_pred HHH--HHHHHHHhhHHHHHh-ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCC
Confidence 110 111111 11122222 233444555555666777777777777777755423334444444 34455556677
Q ss_pred HHHHHHHHHhcC
Q 036165 502 LAEAYEMIKTMS 513 (566)
Q Consensus 502 ~~~A~~~~~~~~ 513 (566)
...|..+++-|.
T Consensus 577 psqA~~~lQ~a~ 588 (625)
T KOG4422|consen 577 PSQAIEVLQLAS 588 (625)
T ss_pred HHHHHHHHHHHH
Confidence 777777777664
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=7e-14 Score=138.23 Aligned_cols=469 Identities=12% Similarity=0.113 Sum_probs=323.9
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhcc---CCCCCcchHHHHHHHHHhcCChHHHHHH
Q 036165 90 RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE---IPKTNIHRWIALTGAYARRGYHQEAVTV 166 (566)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~ 166 (566)
..|+.++|..++.++++..+ .++..|-.|...|-..|+.+++...+-. +...|..-|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34999999999999999874 5677899999999999999999887643 3345678899999999999999999999
Q ss_pred HHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 167 FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV----SSLIDMYSKCGSVEKAKKVFDEMVE 242 (566)
Q Consensus 167 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 242 (566)
|.+..+.. +++...+--=...|-+.|+...|.+.+.++.....+.|..-+ -..++.+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999874 334444445566678899999999999999887543333322 3356677778888999999988844
Q ss_pred --C---ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc---------------------------cHHHHHHHHHHH
Q 036165 243 --K---DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP---------------------------NVVTWNTLISGF 290 (566)
Q Consensus 243 --~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------------------------~~~~~~~ll~~~ 290 (566)
. +...++.++..+.+...++.+...+..+......+ +... ..++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 2 44578999999999999999999888876622222 2222 1233344
Q ss_pred hcCCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 036165 291 SKSGDQVMVSKLFQLMRAKG--VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368 (566)
Q Consensus 291 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 368 (566)
...+..+....+.....+.. ..-++..|.-+..+|...|++.+|+.+|..+......-+...|..+..++...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45555555666666666655 3335677888889999999999999999998877656667788888889999999999
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh------------HHHHHHHHHHhcCChHHHH
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV------------TWNSMIFGCANHGYCDEAI 436 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~A~ 436 (566)
|.+.++.++...+. +......|...+.+.|+.++|.+.+..+..||.. ........+.+.|+.++=+
T Consensus 468 A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999998886543 5667777888889999999999998887654411 1111122233334333322
Q ss_pred HHHHHhh----------------------------------------hcCC-----------C--------------CH-
Q 036165 437 ELFNQME----------------------------------------ERKK-----------L--------------DH- 450 (566)
Q Consensus 437 ~~~~~~~----------------------------------------~~~~-----------~--------------~~- 450 (566)
.+-..|. .... + +-
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 2111111 0000 0 00
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhcCCHHHHHHHHHhcCC------CCC-HH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE----HYACMVDLLGRAGRLAEAYEMIKTMST------EPD-LF 519 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~------~p~-~~ 519 (566)
..+.-++.++++.+++++|..+...+.+.+-+.-+.. .-...+.+....+++..|.+.++.|.. .|. ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1134556678888888888888887776543333333 223445666677888888777776651 121 22
Q ss_pred HHHHHHHH-----------------------------------HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 520 VWGALLGA-----------------------------------CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 520 ~~~~l~~~-----------------------------------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.|+...+. ....+.+.-|...+-++...+|++|.....||-.+
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 23311111 22335678888889899999999998888877654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=7.4e-15 Score=132.85 Aligned_cols=337 Identities=13% Similarity=0.100 Sum_probs=216.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHc--ccCChhHH-HHHHHHHHHcCCCCchhHHHHH
Q 036165 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG--HLSDIGTG-EKIHSLVLKHSFGTDAFVVSSL 220 (566)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 220 (566)
+.+=|.|+. ++.+|...++.-+|+.|.+.|++.+...-..+++..+ ...+..-+ .+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345555555 4568999999999999999998888776666665432 22222221 22333333333 2233333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHH
Q 036165 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300 (566)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 300 (566)
+.|++.+ ++-+...++..++..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+-+-. ...
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 2344433 5555556667778888888888888888888888877777777888888877664432 226
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH-HHHHHHH
Q 036165 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE----AFDTFKEMLSQGFCPTSATISSILPACASAANMRR-GKEIHGC 375 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~ 375 (566)
+++.+|....+.||..|+|+++++..+.|+++. |.+++.+|++.|+.|+..+|..++..+++.++..+ +..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 777788777788888888888888888887653 45677778888888888888888887777777644 2333333
Q ss_pred HH----HhCCCC----cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC---hhHHHHHHHHHHhcCChHHHH
Q 036165 376 AI----VMGVEG----DLHVRSALVDMYAKCGFISEARTLFDKMSE--------RN---TVTWNSMIFGCANHGYCDEAI 436 (566)
Q Consensus 376 ~~----~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~A~ 436 (566)
+. ...++| +...|...+..+.+..+.+-|.++..-... ++ ..-|..+....++....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222222 344555666666677777777776554442 11 123555666667777777778
Q ss_pred HHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 437 ELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 437 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
.+|+.|.-. .-|+..+...++++..-.|.++-.-++|..++.- |...+.....-+...+++
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhc
Confidence 888887777 6777777777778777777777777777777654 543333333333333333
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=1e-12 Score=125.37 Aligned_cols=463 Identities=12% Similarity=0.074 Sum_probs=379.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--------CCcchHHHHHHHH
Q 036165 83 ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--------TNIHRWIALTGAY 154 (566)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~ 154 (566)
.+.-++++...++.|+.++..+.+. ++.++.++-.-...--..|+.+...+++++-.. -|...|..=...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3445666677788899999988665 567888887777777788999988888875432 3555788888888
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCC--cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQN--IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
-..|..-.+..+.......|+.-. ..||..-...|.+.+.++-|..+|...++. ++.+..+|...+..--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 888999889999988888876533 348888888999999999999999999986 46677888888888888899999
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036165 233 AKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309 (566)
Q Consensus 233 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (566)
...+|.+... +....|-.....+-..|+...|..++....+.. +-+...+..-+.......+++.|..+|.+....
T Consensus 569 l~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 9999999843 456678888888888999999999999988764 336678888889999999999999999988764
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHH
Q 036165 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT-SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388 (566)
Q Consensus 310 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 388 (566)
.|+...|.--+..-.-.+..++|..++++.++. -|+ ...|..+.+.+-+.++.+.|+..|..-.+. ++..+..+
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 678888877777777789999999999998875 355 456777888899999999999888776554 33467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC
Q 036165 389 SALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL 465 (566)
Q Consensus 389 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (566)
..|...-.+.|.+-.|..++++..- .+...|-..|..-.+.|+.+.|..++.+..+.++.+...|..-|....+.++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 8899999999999999999998764 4678899999999999999999999999999888888899998888877777
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
-......+++. +-|+.+.-.+...+....+++.|.+.|++.. ..| ...+|.-+...+.++|.-+.-.+++++
T Consensus 803 kTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555554433 4477778888899999999999999999988 334 467788888889999999999999999
Q ss_pred HhhhCCCCchHHHHHH
Q 036165 544 LSELEPESAANNMLLT 559 (566)
Q Consensus 544 ~~~~~p~~~~~~~~l~ 559 (566)
....+|.....+...+
T Consensus 877 c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 877 CETAEPTHGELWQAVS 892 (913)
T ss_pred HhccCCCCCcHHHHHh
Confidence 9999998877665544
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.9e-13 Score=122.26 Aligned_cols=447 Identities=12% Similarity=0.099 Sum_probs=338.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--CCcc-hHHHHHHHHHhcCChHHHHHHH
Q 036165 91 DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--TNIH-RWIALTGAYARRGYHQEAVTVF 167 (566)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~ 167 (566)
++++..|+.++++++... ..+..++-..+.+-.++..++.|+.++++... |.+. .|...+..=-.-|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 567788999999999877 46777888889999999999999999998765 3332 3555555555679999999999
Q ss_pred HHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----
Q 036165 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---- 243 (566)
Q Consensus 168 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 243 (566)
++-.+ ..|+...|.+.|..-.+.+.++.|..+++..+-. .|++..|-.....-.++|....|..+|+...+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99877 5899999999999999999999999999998864 599999999999999999999999999988542
Q ss_pred --ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHH--------HHHHHHcCC
Q 036165 244 --DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKL--------FQLMRAKGV 311 (566)
Q Consensus 244 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~ 311 (566)
+...+.+....=.+++.++.|.-+|+-..+. ++-+ ...|......--+-|+.....+. ++.+++. -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-N 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-C
Confidence 2334555555556678888998888877654 2222 33444444443445655444333 2223332 2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHH---HH-H----HHHHccCchHHHHHHHHHHHHhCC
Q 036165 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA--TIS---SI-L----PACASAANMRRGKEIHGCAIVMGV 381 (566)
Q Consensus 312 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~---~l-l----~~~~~~~~~~~a~~~~~~~~~~~~ 381 (566)
+-|-.+|--.++.-...|+.+...++|+..+.. ++|-.. .+. -+ + -.-....+.+.+++++...++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 447778888888888899999999999999875 455331 111 11 1 1123567899999999999883 3
Q ss_pred CCcHhHHHHHHHHH----HhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHH
Q 036165 382 EGDLHVRSALVDMY----AKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455 (566)
Q Consensus 382 ~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 455 (566)
+....+|..+--+| .++.++..|.+++..... |...++..-|..-.+.++++.+..+|++..+-.|.|..+|..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 33455555544444 578899999999987764 888889988998899999999999999999988889999999
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHH-----
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACK----- 529 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~----- 529 (566)
....-...|+.+.|..+|..+++...+......|.+.|+.=...|.++.|..++++.+ ..+-..+|.+...--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 9998899999999999999998763344445677888888889999999999999988 3355557777664433
Q ss_pred hcC-----------CHHHHHHHHHHHhh
Q 036165 530 NHG-----------NIELAEIAAKHLSE 546 (566)
Q Consensus 530 ~~g-----------~~~~A~~~~~~~~~ 546 (566)
+.| ....|..+|+++..
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 334 56788888888874
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4e-13 Score=126.25 Aligned_cols=479 Identities=10% Similarity=-0.006 Sum_probs=327.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhc--cCCCCCcchHHHHHHH
Q 036165 76 LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--EIPKTNIHRWIALTGA 153 (566)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~ 153 (566)
.+.+-+..+++-+..+.++..|.-+-+.+...+. ||.-.--+.+.+.-.|+.+.|..+.. .+.+.|.........+
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 4456677788888888888888888888876664 44444447788888888888887764 4556788888888999
Q ss_pred HHhcCChHHHHHHHHH----hHHCC---------CCCCcch----HHHHHHH-------HcccCChhHHHHHHHHHHHcC
Q 036165 154 YARRGYHQEAVTVFHE----MHIQG---------LKQNIFV----IPSVLKA-------CGHLSDIGTGEKIHSLVLKHS 209 (566)
Q Consensus 154 ~~~~g~~~~A~~~~~~----m~~~g---------~~p~~~~----~~~ll~~-------~~~~~~~~~a~~~~~~~~~~g 209 (566)
+.+..++++|+.++.. +.... +.+|..- -+.-.+. +....+.++|...+.+.+..
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~- 170 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA- 170 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-
Confidence 9999999999999882 21100 1111111 1111111 22334455666666555433
Q ss_pred CCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcC-----CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHH
Q 036165 210 FGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMV-----EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283 (566)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 283 (566)
|...+..+...-... -..++-..+|+.+. ..++.....+.....-...-++....-.+-.-.+..-+....
T Consensus 171 ---D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 171 ---DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred ---chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 233222222111110 01112222222210 011111111111110000000000000000111233445555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 363 (566)
..-..-|...+++.+..++.+.+.+. .++....+-.-|.++...|+..+-..+=.+|.+. .+....+|-.+.--|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 56666777889999999999998876 3556667777788999999999988888888876 366678899999999999
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
|+.++|+..+.+....+.. -...|-.+...|.-.|.-++|+..+....+ .....+--+..-|.+.++.+.|.+.|.
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998765433 346788899999999999999998876554 222233335566888999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-CCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 036165 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY-KIM----PRTEHYACMVDLLGRAGRLAEAYEMIKTMS-- 513 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 513 (566)
+.....|.|+..++-+.-.....+.+.+|..+|+...... .+. -...+++.|+.+|.+.+++++|...+++..
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 9999889999999999988889999999999999887320 011 134568899999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.+.+..++.++.-.|...|+++.|+..|.+++.+.|+|...-..|+....
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999888888887654
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.3e-11 Score=111.99 Aligned_cols=440 Identities=11% Similarity=0.066 Sum_probs=326.1
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcc-hHHHHHH
Q 036165 112 LTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF-VIPSVLK 187 (566)
Q Consensus 112 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 187 (566)
+...+-...+.-...+++..|+.+|++... ++...|-.-+..=.++.....|..++++.... -|-+. .|-.-+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 444454455555566778889999998765 57778999999999999999999999999875 34332 2333444
Q ss_pred HHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhhHHHHHHHHHHcCChhHHH
Q 036165 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEAL 265 (566)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~ 265 (566)
.--..|++..|.++|+.-.+ ..|+...|.+.++.-.+...++.|..+++.. ..|++.+|-.....=.++|....|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 44567999999999999887 4899999999999999999999999999998 5789999999999999999999999
Q ss_pred HHHHHhhhC-CC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHH-----
Q 036165 266 NLVEEIGTP-RV-KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVISGLVHNFCNDEAFD----- 336 (566)
Q Consensus 266 ~~~~~m~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~----- 336 (566)
.+|....+. |- .-+...|.+...--.+...++.|.-++.-.++. ++.+ ...|.....---+-|+.....+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999987652 21 112333444444444567788999999888776 2222 3344444443344565544333
Q ss_pred ---HHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH------hHHHHHHH---HHHhcCCHHHH
Q 036165 337 ---TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL------HVRSALVD---MYAKCGFISEA 404 (566)
Q Consensus 337 ---~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~---~~~~~g~~~~A 404 (566)
-|+.+++.+ +.|..++-..+..-...|+.+...++++.++..-++.+. .+|.-+=- .-....+++.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 245555543 667778888888888899999999999999876443221 12211111 11346789999
Q ss_pred HHHHHhcCC--C-ChhHHHHH----HHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 405 RTLFDKMSE--R-NTVTWNSM----IFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 405 ~~~~~~~~~--~-~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
..+|+...+ | ...|+.-+ ..--.++.+...|.+++...+.. -|-..+|...|..-.+.+.++.+.+++++..
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-CPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999987775 2 33344443 33445688999999999988764 5667789999998899999999999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
+- + +.+..+|......=...|+.+.|..+|+-+..+|. ...|.+.|.--...|.++.|..+++++++..+...
T Consensus 465 e~-~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 465 EF-S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK- 541 (677)
T ss_pred hc-C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-
Confidence 64 2 34567888888888899999999999999886663 45688888888899999999999999999877655
Q ss_pred HHHHHHHH
Q 036165 554 NNMLLTDL 561 (566)
Q Consensus 554 ~~~~l~~~ 561 (566)
+++..+..
T Consensus 542 vWisFA~f 549 (677)
T KOG1915|consen 542 VWISFAKF 549 (677)
T ss_pred HHHhHHHH
Confidence 55555443
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=4e-12 Score=126.10 Aligned_cols=422 Identities=13% Similarity=0.074 Sum_probs=300.1
Q ss_pred HhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHH
Q 036165 123 YTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199 (566)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 199 (566)
....|++++|.+++.++.+ .+...|.+|...|-..|+.++++..+-..-..+ +-|...|..+.....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 3344999999999999876 356789999999999999999999876655443 346678889999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----h----hHHHHHHHHHHcCChhHHHHHHHHh
Q 036165 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI----V----AMNAMVSGYVQRGLATEALNLVEEI 271 (566)
Q Consensus 200 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~~m 271 (566)
-.+.++++.. +++...+-.-...|-+.|+...|.+-|.++.+-++ . .-...+..+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999986 55666655678889999999999999999854322 2 2223456677777779999988887
Q ss_pred hh-CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---------------------------ChhhHHHHHH
Q 036165 272 GT-PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP---------------------------DVVSWTSVIS 323 (566)
Q Consensus 272 ~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~li~ 323 (566)
.. .+-..+...++.++..+.+...++.+......+.....++ +...+ -++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 65 2234556678888889999999999988888776622222 22221 2233
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQGFCPT--SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
++.+....+....+.....+..+.|+ ...|.-+..++.+.|++..|..++..+......-+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44555555566666666666664443 4568899999999999999999999999876666788999999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---------CCCCHHHHHHHHHHHhccCChHHH
Q 036165 402 SEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEER---------KKLDHLSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 402 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a 469 (566)
++|...|+++.. | +...--.|...+.+.|+.++|.+.++.+... ..|+..........+...|+.++=
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999886 3 3445555667788999999999999986522 123333333344455566665553
Q ss_pred HHHHHHhHHhc--------------------------------------------------------------CCCCC--
Q 036165 470 QRLFNMMQEKY--------------------------------------------------------------KIMPR-- 485 (566)
Q Consensus 470 ~~~~~~~~~~~--------------------------------------------------------------~~~p~-- 485 (566)
..+-..|+..+ ++..+
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 33322222110 00000
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 486 TEHYACMVDLLGRAGRLAEAYEMIKTMST----EPDLF---VW-GALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
-..+.-++..+.+.|++++|+.++..+.. ..+.. .+ ...+.++...+++..|...++.++..
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 01223466778888888888888877761 12222 22 34445667888888888888888865
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=6.9e-16 Score=143.98 Aligned_cols=256 Identities=15% Similarity=0.129 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 363 (566)
.+...+.+.|++++|.++++...... ...+...|..+.......++++.|...++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45667777888888888886544433 233455555666666777888888888888876542 244445555555 577
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIEL 438 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~ 438 (566)
+++++|..+.....+.. +++..+..++..+.+.++++++..+++.+.. .+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766655433 3445556667777777777777777766431 3555666667777777777777777
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC
Q 036165 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEP 516 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p 516 (566)
+++..+..|.|......++..+...|+.+++.++++..... .+.|+..+..+..+|...|+.++|+.++++.. .+.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 77777766666777777777777777777777777777664 24555666777777777777777777777765 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 517 DLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
|+.+...+..++...|+.++|.++.+++++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 666667777777777777777777776654
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=5.6e-13 Score=130.18 Aligned_cols=256 Identities=12% Similarity=-0.000 Sum_probs=149.9
Q ss_pred HHcCChhHHHHHHHHhhhCCCCccHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036165 256 VQRGLATEALNLVEEIGTPRVKPNVVTWN--TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 333 (566)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+.++.+.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555432 23322111 12334444555555555555554442 2234444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413 (566)
Q Consensus 334 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 413 (566)
|.+++..+.+.+..++. ....+- ...+..++.......+.+...++++...+
T Consensus 206 a~~~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~ 257 (398)
T PRK10747 206 LLDILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSR 257 (398)
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 55555555544322111 110000 01222333333344455666666666653
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHH
Q 036165 414 ---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490 (566)
Q Consensus 414 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 490 (566)
.++.....+...+...|+.++|.+++++..+ .+++.... ++.+....++.+++.+..+...++ .+-|+..+.
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 4566677777788888888888888877776 34454322 233334557888888888887764 344556677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
.+...+.+.|++++|.+.|+++. ..|+..++..+...+.+.|+.++|.+.+++.+.+
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78888888888888888888877 5588888888888888888888888888888764
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.8e-12 Score=126.65 Aligned_cols=232 Identities=8% Similarity=0.038 Sum_probs=156.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 036165 326 VHNFCNDEAFDTFKEMLSQGFCPTSATIS--SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 403 (566)
...|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+..+. ++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555432 23322111 2233444555555555555555554432 45556666666666666666
Q ss_pred HHHHHHhcCCC---Ch--------hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 404 ARTLFDKMSER---NT--------VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 404 A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
|.+++..+.+. +. ..|..++.......+.+...++++.+.+..+.++.....+..++...|+.++|.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666665541 11 12333344444455667777888887766777888999999999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
+++..+. +|+.... ++.+....++.+++.+..++.. ..| |+..+..+...|.+.|++++|.+.|+++++..|+
T Consensus 286 L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 286 ILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9998864 5555322 3344456699999999999887 345 5666889999999999999999999999999998
Q ss_pred CchHHHHHHHHHhhcC
Q 036165 551 SAANNMLLTDLYANAG 566 (566)
Q Consensus 551 ~~~~~~~l~~~~~~~g 566 (566)
+.. +..|+.++.++|
T Consensus 361 ~~~-~~~La~~~~~~g 375 (398)
T PRK10747 361 AYD-YAWLADALDRLH 375 (398)
T ss_pred HHH-HHHHHHHHHHcC
Confidence 755 668999998876
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.3e-15 Score=142.18 Aligned_cols=242 Identities=19% Similarity=0.132 Sum_probs=92.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (566)
.+...+...|++++|++++++......+|+... +..+...+...++++.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 345666777777777777755444332333333 344445556677777777777777765544 45556666666 577
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036165 399 GFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 399 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
+++++|..++...-+ ++...+..++..+...++++++.++++++... .+.+...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765533 45555666677777777777777777776654 34566667777777777777777777777
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 475 MMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 475 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
++.+. .| |......++..+...|+.+++.++++... .+.|+..|..+..+|...|+.++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 77764 34 46667777777777777777666666554 23455667777777777777777777777777777777
Q ss_pred chHHHHHHHHHhhcC
Q 036165 552 AANNMLLTDLYANAG 566 (566)
Q Consensus 552 ~~~~~~l~~~~~~~g 566 (566)
+.....++.++...|
T Consensus 248 ~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 248 PLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHHHHT---
T ss_pred ccccccccccccccc
Confidence 777777777777655
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.7e-12 Score=118.51 Aligned_cols=447 Identities=12% Similarity=0.091 Sum_probs=315.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHH-HHHHHHHhhcCChHHHHHHhc----cCCCCC----cchHHH
Q 036165 79 AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFD----EIPKTN----IHRWIA 149 (566)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~----~~~~~~----~~~~~~ 149 (566)
..+..+.+.|.......+|...++.+++...-|+.-.. ..+-..+.+.+++..|++.+. +++.-+ +...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 44566667777788888999999999988766665443 334567888889999998874 444422 335666
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC------------chhHH
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT------------DAFVV 217 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~~~ 217 (566)
+.-.+++.|.++.|+..|+...+. .|+..+-..++-++...|+.++..+.|.+|+.....+ +....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 777789999999999999998875 6777766666666677899999999999998754332 22222
Q ss_pred HHHH-----HHHHhcC--CHHHHHHHHHhc----CCCChhh-------------HH--------HHHHHHHHcCChhHHH
Q 036165 218 SSLI-----DMYSKCG--SVEKAKKVFDEM----VEKDIVA-------------MN--------AMVSGYVQRGLATEAL 265 (566)
Q Consensus 218 ~~l~-----~~~~~~g--~~~~A~~~~~~~----~~~~~~~-------------~~--------~li~~~~~~g~~~~a~ 265 (566)
+.-+ .-.-+.+ +.+++.-.--++ ..++-.. +. .-...+.++|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2221 1122211 223332222222 2232110 11 1123578899999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 266 NLVEEIGTPRVKPNVVTWNTLISGFS--KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 266 ~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
++++-..+..-+.-...-+.|...+. -..++..|.+.-+...... .-+......-......+|++++|.+.|++.+.
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 99998876544433333333333322 2446777877777665431 11222222233344568999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH
Q 036165 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWN 420 (566)
Q Consensus 344 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 420 (566)
..- .-...+..+.-.+-..|++++|.+.|-++...-. .+..+..-+.+.|....+...|++++..... .|+....
T Consensus 519 nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ils 596 (840)
T KOG2003|consen 519 NDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILS 596 (840)
T ss_pred Cch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH
Confidence 531 1222333444566788999999998877654322 2677778889999999999999999987765 5677889
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHhc
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV-DLLGRA 499 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~ 499 (566)
.|...|-+.|+-..|.+.+-.--+-.+-|..+..-|..-|....-+++++.+|++.. -+.|+..-|..++ .++.|.
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhc
Confidence 999999999999999998877766688899999999999999999999999999986 5789999998877 566789
Q ss_pred CCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCC
Q 036165 500 GRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGN 533 (566)
Q Consensus 500 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 533 (566)
|++.+|.++++... .+.|...+.-|.+.|...|-
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999887 44678888888888887773
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.4e-12 Score=128.16 Aligned_cols=222 Identities=12% Similarity=-0.006 Sum_probs=129.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhH-------HHHHHHH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV-------RSALVDM 394 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~ 394 (566)
...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544432 22333444444445555555555555555544433222111 1111111
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH--HHHHHHHhccCChHHH
Q 036165 395 YAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF--TAVLTACCHVGLVELG 469 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a 469 (566)
-......+...+.++...+ .+...+..+...+...|+.++|.+++++..+..+.+.... ....-.....++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 1112223444445554443 3666777777788888888888888888877644443211 1111222345677788
Q ss_pred HHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHh--cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 470 QRLFNMMQEKYKIMPRT--EHYACMVDLLGRAGRLAEAYEMIKT--MS-TEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
.+.++...+. .+-|+ ....++...+.+.|++++|.+.|++ .. ..|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877764 22233 5566788888888888888888883 33 4688888888888888888888888888887
Q ss_pred hh
Q 036165 545 SE 546 (566)
Q Consensus 545 ~~ 546 (566)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 65
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.2e-11 Score=109.53 Aligned_cols=373 Identities=13% Similarity=0.057 Sum_probs=255.2
Q ss_pred CCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh-HHHHHHHH
Q 036165 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA-MNAMVSGY 255 (566)
Q Consensus 177 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~ 255 (566)
.|..-+-.....+-..|..+.|...+...+..- + ..|.+-+....-..+.+.+..+...+...+... ---+..++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P---~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-P---WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-C---cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 344333333344456677777777777766431 2 233333333333344444444444443322211 11233455
Q ss_pred HHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCCh
Q 036165 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP----DVVSWTSVISGLVHNFCN 331 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~ 331 (566)
-.....+++++-.......|.+-+...-+....+.....|++.|+.+|+++.+. .| |..+|+.++ |+++.+-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHH--HHHhhhH
Confidence 555677888887888777777666555555555666778999999999998876 33 567777766 3333322
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
. +.++-+-...--+--+.|...+...|+-.++.++|..+|+..++.++. ....++.+..-|....+...|+.-++..
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 222222221111334456677777888888899999999999987655 5678888899999999999999999987
Q ss_pred CC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhH
Q 036165 412 SE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488 (566)
Q Consensus 412 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 488 (566)
.+ .|-..|-.|..+|.-.+.+.=|+-.|++.....|.|...|.+|..+|.+.++.++|++.|++...- | +.+...
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~ 468 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSA 468 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHH
Confidence 76 577789999999999999999999999999888889999999999999999999999999999875 3 335678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC------CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKTMST------EPDLFVW---GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+..|.+.|.+.++.++|...|++... ..+..+. .-|..-+.+.+++++|.........-+|.-.....++-
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlR 548 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLR 548 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 88999999999999999888877651 1233232 22445577889999998888877766665555555554
Q ss_pred HHH
Q 036165 560 DLY 562 (566)
Q Consensus 560 ~~~ 562 (566)
.+.
T Consensus 549 eir 551 (559)
T KOG1155|consen 549 EIR 551 (559)
T ss_pred HHH
Confidence 443
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=5.1e-12 Score=124.18 Aligned_cols=288 Identities=12% Similarity=0.001 Sum_probs=214.1
Q ss_pred HHhcCCHHHHHHHHHhcCCC--C-hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHH
Q 036165 224 YSKCGSVEKAKKVFDEMVEK--D-IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300 (566)
Q Consensus 224 ~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 300 (566)
....|+++.|++.+.+..+. + ...+-....+..+.|+++.|.+.+.+..+....+....-......+...|+++.|.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 35679999999999888543 3 23344556778888999999999999876432222223334577888899999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccCchHHHHHHHHHHH
Q 036165 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC---ASAANMRRGKEIHGCAI 377 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~ 377 (566)
+.++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.++.+.......-..+. ...+..+.+.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998874 3366788899999999999999999999999987543332212111221 22233333344555555
Q ss_pred HhCCC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH---HHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 036165 378 VMGVE---GDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVT---WNSMIFGCANHGYCDEAIELFNQMEERKKLD 449 (566)
Q Consensus 378 ~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 449 (566)
+..+. .++..+..++..+...|+.++|.+++++..+ |+... ...........++.+.+.+.+++..+..+.|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 44332 3788889999999999999999999999886 44332 1222223344578889999999988876667
Q ss_pred H--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 450 H--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 450 ~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+ ....++...+.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 77889999999999999999999964443 557999999999999999999999999999754
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2e-12 Score=119.40 Aligned_cols=382 Identities=11% Similarity=0.022 Sum_probs=221.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC-cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHH
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQN-IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFVVSSLIDMY 224 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~ 224 (566)
+-...+-|.++|++++|++.|.+.++. .|| +.-|.....+|...|+|+++.+--.+.++. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 445677788999999999999999884 677 667778888889999999998888888775 344 34566666777
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHH---------hhhCC--CCccHHHHHHHHHHHhcC
Q 036165 225 SKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE---------IGTPR--VKPNVVTWNTLISGFSKS 293 (566)
Q Consensus 225 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------m~~~~--~~p~~~~~~~ll~~~~~~ 293 (566)
-..|++++|+.=.. -.++..++....-.--+.+++++ |.+.+ +-|......+....+-..
T Consensus 194 E~lg~~~eal~D~t---------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDVT---------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhhh---------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 77888887764221 12222222222211222222221 11111 234443333333222110
Q ss_pred --------C--------------------CHHHHHHHHHHHHHc-CCCC--C---------hhhHHHHHHHHHhcCChhH
Q 036165 294 --------G--------------------DQVMVSKLFQLMRAK-GVEP--D---------VVSWTSVISGLVHNFCNDE 333 (566)
Q Consensus 294 --------~--------------------~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~li~~~~~~g~~~~ 333 (566)
+ .+..+...+.+-... -..+ + ..+...-..-+.-.|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 0 122222222211100 0001 1 1111111122334566777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413 (566)
Q Consensus 334 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 413 (566)
|..-|+..++....++. .|..+...|....+.++....|+.+.+.++. ++.+|..-..++.-.+++++|..-|++...
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777665422222 2566666777777777777777777776544 556666666666666777777777777665
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-----
Q 036165 414 ---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----- 485 (566)
Q Consensus 414 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----- 485 (566)
.++..|-.+..+.-+.++++++...|++.++..|.-+..|+.....+...++++.|.+.|+..++. .|+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~ 499 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLII 499 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---cccccccc
Confidence 234445555555556667777777777777777777777777777777777777777777777643 333
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 486 ----TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 486 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
+.+--.++-.-.+ +++..|..+++++. ..| ....+..|...-.+.|+.++|+++|++...+
T Consensus 500 v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1111122222222 67777777777766 222 3445666777777777777777777776654
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.5e-12 Score=115.36 Aligned_cols=344 Identities=12% Similarity=0.044 Sum_probs=251.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHH--HHHH
Q 036165 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--NTLI 287 (566)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll 287 (566)
...|...+-.....+-+.|..+.|...|......-+..|.+.+...--..+.+.+..+.. |.+.|..-+ -.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHH
Confidence 345555555555667788999999999999876555555554443333333333332221 112111111 1244
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCc
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF--CPTSATISSILPACASAAN 365 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~ 365 (566)
.++-...+.+++..-.+.....|++.+...-+....+.-.+.++|+|+.+|+++.++.. --|..+|+.++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 56666678888888888888888877766666666777889999999999999988731 1245667766654333222
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 036165 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 442 (566)
+. ++.+-.-.--+--+.+...+.+-|.-.++.++|...|++..+ .....|+.|..-|....+...|.+.|+..
T Consensus 315 Ls----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 111111111122456777888999999999999999999886 34568999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHH
Q 036165 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFV 520 (566)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~ 520 (566)
.+..|.|...|-.|.++|.-.+...-|+-.|+++... -+-|+..|.+|+++|.+.++.++|.+-|.++.. ..+...
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999999999999999999863 344789999999999999999999999999873 345588
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-------hCCCCchHHHHHHHHHhh
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSE-------LEPESAANNMLLTDLYAN 564 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~ 564 (566)
+..|...|-+.++.++|.+.+++-++ ..|+-..+...|+..+.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987 345445555556655544
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.1e-13 Score=130.78 Aligned_cols=283 Identities=13% Similarity=0.070 Sum_probs=150.5
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG--VEPDVVSWTSVISGLVHNFCNDEAFDT 337 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 337 (566)
+..+|+..|..+.+. +.-+......+..+|...+++++|+++|+.+.+.. ..-+...|.+.+--+ .+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHHH
Confidence 456666666663332 23333455556666666666666666666665541 111444555444221 11 112222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 036165 338 F-KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416 (566)
Q Consensus 338 ~-~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 416 (566)
+ +.+.+. -+..+.+|..+...|.-+++.+.|++.|+.+++.+.. ....|+.+..-+.....+|.|...|+.....+.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 222222 2444556666666666666666666666666554322 445555555555556666666666666655444
Q ss_pred hHHH---HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 417 VTWN---SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 417 ~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
..|+ -+...|.++++.+.|+-.|+++.+-.|.+.+....+...+-+.|+.|+|+++++++... -+-|+..--.-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHH
Confidence 3333 34455666666666666666666555555555566666666666666666666666532 112233333344
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
..+...+++++|+..++++. .-| +..++..+...|.+.|+.+.|..-|--|.+++|.-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 44555566666666666655 223 34444555566666666666666666666666543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.6e-12 Score=124.98 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=92.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHH---
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS--- 389 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 389 (566)
.+.+|.++..+|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+.++.. ++..|+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHH
Confidence 3445555555555555555555555555432 22 3444555555555555555555555554432 222232
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCh
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLV 466 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (566)
-+...|.|.++++.|+-.|++..+ .+.+....+...+.+.|+.++|+.+++++....+.|+..-...+..+...+++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 234445555555555555555443 23334444444455555555555555555544444444444444445555555
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
++|...++++++. ++-+..++..++..|.+.|+.+.|+.-|--
T Consensus 574 ~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 574 VEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 5555555555532 222334444555555555555555444443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.9e-10 Score=104.30 Aligned_cols=281 Identities=13% Similarity=0.020 Sum_probs=167.9
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 036165 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337 (566)
Q Consensus 258 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 337 (566)
.|+|.+|++++.+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++-+..-.++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544433222 2233334444445555555555555554443333444444444555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL-------HVRSALVDMYAKCGFISEARTLFDK 410 (566)
Q Consensus 338 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 410 (566)
+.++.+.+ +-..........+|.+.|++.....++..+.+.+.-.+. .+++.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555443 233344455555555555555555555555555544332 2344444444444445555556666
Q ss_pred cCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 411 MSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 411 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
... .++..-.+++.-+.+.|+.++|.++.++..+. ..|+ ....-.+.+.++.+.-++..+.-....+. ++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DP 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--Ch
Confidence 553 34556666677777788888888887777776 4444 22222456677777777777777665333 44
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
..+.+|...|.+.+.|.+|.+.|+... ..|+..+|+.+..++.+.|+.++|.+..++.+-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 667788888888888888888888766 568888888888888888888888888888774
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=6.6e-11 Score=107.22 Aligned_cols=282 Identities=11% Similarity=0.080 Sum_probs=203.3
Q ss_pred cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036165 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236 (566)
Q Consensus 157 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 236 (566)
.|+|.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+++.++.+..-.++..+.-.........||++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999998877765443 3445666677778899999999999988874466677777888888999999999888
Q ss_pred HHhcC---CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccH-------HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 237 FDEMV---EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV-------VTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 237 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
++++. ..++........+|.+.|++.+...++..|.+.|+--++ .+|..++.-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 88773 457778888999999999999999999999988865544 45666776666666666666666665
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHh
Q 036165 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386 (566)
Q Consensus 307 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 386 (566)
... ...++..-..++.-+...|+.++|.++.++..+++..|+ -...-.+.+.++.+.-.+..++-.+..+. ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Chh
Confidence 433 344566666777778888888888888888887766655 22223345556666666665555544322 446
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
.+.+|...|.+.+.|.+|...|+...+ |+..+|+.+..++.+.|+..+|.+.+++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 677777777777777777777776554 67777777777777777777777777766544
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=8.4e-11 Score=103.30 Aligned_cols=284 Identities=12% Similarity=0.112 Sum_probs=202.6
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-C--hhhHHHHHHHHHhcCChhHH
Q 036165 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-D--VVSWTSVISGLVHNFCNDEA 334 (566)
Q Consensus 258 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~A 334 (566)
+++.++|.++|-+|.+.. +-+..+--+|.+.|-+.|..+.|..++..+.++.--+ + ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887632 3344555667788888888888888888877642111 1 22344566778888889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD----LHVRSALVDMYAKCGFISEARTLFDK 410 (566)
Q Consensus 335 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 410 (566)
+.+|..+.+.+ ..-......++..|-...++++|.++-.++.+.+..+. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998887754 34455677888888888999999988888888765543 34566777777778899999999988
Q ss_pred cCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 411 MSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 411 ~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
..+. .+..--.+...+...|+++.|.+.++.+.+.. .--+.+...|..+|.+.|+.++....+.++.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 8752 33344456678888999999999999988862 233456788888999999999999999988865 3444
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH-HhcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMI-KTMSTEPDLFVWGALLGACK---NHGNIELAEIAAKHLSE 546 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 546 (566)
..-..+.+.-....-.+.|...+ +....+|+...+..++..-. ..|...+..-+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44455555544444555555544 55557899999988887654 33446666667777663
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=6.6e-11 Score=109.57 Aligned_cols=217 Identities=12% Similarity=0.085 Sum_probs=172.2
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHH
Q 036165 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369 (566)
Q Consensus 290 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 369 (566)
+.-.|+.-.+..-|+..++....++ ..|--+...|....+.++....|....+-+ +-++.+|..-.+...-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 4456889999999999988743332 227677778999999999999999998765 55677888888888889999999
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 036165 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446 (566)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 446 (566)
..=|++.+...+. +...|.-+.-+..+.+++++++..|++..+ | -+..|+.....+..+++++.|.+.|+..++..
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999999887654 566677777777889999999999999886 4 35688888999999999999999999998863
Q ss_pred CC------CHHHH--HHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 447 KL------DHLSF--TAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 447 ~~------~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+. +..++ -.++-. .=.+++..|.+++.++.+. .|. ...|..|...-.+.|+.++|.++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL---DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc---CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 22222 122221 1248999999999999854 443 4578899999999999999999999865
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=9.6e-11 Score=102.95 Aligned_cols=289 Identities=14% Similarity=0.106 Sum_probs=159.5
Q ss_pred cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC-c--hhHHHHHHHHHHhcCCHHHH
Q 036165 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT-D--AFVVSSLIDMYSKCGSVEKA 233 (566)
Q Consensus 157 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~l~~~~~~~g~~~~A 233 (566)
++++++|.++|-+|.+.. +-+..+..++.+.+.+.|..|.|.++++-+.++.--+ + ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567888888888887742 2244455567777778888888888888877642111 1 12334456667777777777
Q ss_pred HHHHHhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036165 234 KKVFDEMVEKD---IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 234 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
+.+|..+.+.+ ......|+..|-+..+|++|++.-+++.+.+-.+...- |
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I----------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I----------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H-----------------------
Confidence 77777776532 23455566666667777777666666655433322110 0
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHH
Q 036165 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390 (566)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (566)
...|..+...+....+.+.|..++++..+.+ +.....-..+.......|+++.|.+.++.+.+.++.--+.+...
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1123333333444445555555555554432 11222222333445555555555555555555555545566666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc---cCC
Q 036165 391 LVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH---VGL 465 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~ 465 (566)
|..+|.+.|+.++....+.++.+ ++...-..+...-......+.|...+.+-.. .+|+...+..++..... .|.
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR-RKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh-hCCcHHHHHHHHHhhhccccccc
Confidence 77777777777777777766654 4444444444433344444445444433322 36666666666664432 233
Q ss_pred hHHHHHHHHHhHHh
Q 036165 466 VELGQRLFNMMQEK 479 (566)
Q Consensus 466 ~~~a~~~~~~~~~~ 479 (566)
..+-...+..|...
T Consensus 334 ~k~sL~~lr~mvge 347 (389)
T COG2956 334 AKESLDLLRDMVGE 347 (389)
T ss_pred hhhhHHHHHHHHHH
Confidence 44455555555543
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-10 Score=109.89 Aligned_cols=414 Identities=14% Similarity=0.020 Sum_probs=293.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 036165 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223 (566)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 223 (566)
..-+-.+.+-+..+.++..|+-+-++....+..|+ ..--+.+++.-.|+.+.|..++..-.- ...|.........+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHH
Confidence 34466677777788888888888888876654444 444566777777888888777665422 23567777778888
Q ss_pred HHhcCCHHHHHHHHHhcC---------CCC--------hhh----HHHHH-------HHHHHcCChhHHHHHHHHhhhCC
Q 036165 224 YSKCGSVEKAKKVFDEMV---------EKD--------IVA----MNAMV-------SGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 224 ~~~~g~~~~A~~~~~~~~---------~~~--------~~~----~~~li-------~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
+.+..++++|..++.... +++ ..- -+.-. ..|....+.++|...|.+.....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 899999999999998320 011 100 11111 23444556777888887766543
Q ss_pred CCccHHHHHHHHHHHhcCC------------------CHHHHHHHHHHHHH----------------cCCCCChhhHHHH
Q 036165 276 VKPNVVTWNTLISGFSKSG------------------DQVMVSKLFQLMRA----------------KGVEPDVVSWTSV 321 (566)
Q Consensus 276 ~~p~~~~~~~ll~~~~~~~------------------~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l 321 (566)
+.- ...+..++.+..-.. +.+....+++.... .+..-++......
T Consensus 172 ~~c-~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 172 AKC-FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred hhh-HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 221 122222222211111 11112222221100 0112244455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+...+-..+++.-+. .+.+|-++.--|...|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCc
Confidence 666777899999999999998764 556666666666888888887777777777776433 677888899999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 402 SEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.+|++.|.+... .-...|-.....|+-.|..++|...|...-+..+.....+.-+.--|...++++.|.+.|.++..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999997764 23468999999999999999999999999888766666677777778899999999999999985
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--------EP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 479 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
. .+.|+...+-+.-.....+.+.+|..+|+.... ++ =..+++.|.-+|++.+.+++|+..+++++.+.|
T Consensus 409 i--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 I--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred c--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 3 455677888888888888999999999988761 11 234678888999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhcC
Q 036165 550 ESAANNMLLTDLYANAG 566 (566)
Q Consensus 550 ~~~~~~~~l~~~~~~~g 566 (566)
.++.+|..+|-+|...|
T Consensus 487 k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLG 503 (611)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 99999999999998776
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=3.3e-10 Score=112.25 Aligned_cols=441 Identities=12% Similarity=0.046 Sum_probs=223.5
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
+..|+..+|..++..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|...+|+.|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 34566677888888888888888887 8888877777777788888888888888776655 677788888888
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVE 231 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~ 231 (566)
+|.+.||... ++..++ ....+...+...|.......++..+.- .+.-||.. .++....-.|-++
T Consensus 92 ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwa 156 (1088)
T KOG4318|consen 92 AYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWA 156 (1088)
T ss_pred HHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHH
Confidence 8888888655 222222 111222223333333333333322111 11112221 1223333344555
Q ss_pred HHHHHHHhcCCCChh-hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036165 232 KAKKVFDEMVEKDIV-AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 232 ~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
.+.+++..++.-... +....++-... .+.-..++++......-.|++.+|..++.+-...|+.+.|..++.+|.+.|
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 555555444221000 00001111111 111112222221111113555555555555555566666666666666655
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH----------------------
Q 036165 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR---------------------- 368 (566)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---------------------- 368 (566)
++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 55555555554433 55555555555555555666665555554444444222111
Q ss_pred --HHHHH------------HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CChhHHHHHHHHHH
Q 036165 369 --GKEIH------------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-------RNTVTWNSMIFGCA 427 (566)
Q Consensus 369 --a~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~ 427 (566)
+.+.+ ....-.|+.....+|... .-...+|+-++.+.+...+.. .++..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11111 111112333333333322 223336777777777666553 23334444433332
Q ss_pred hcC----------------------ChHHHHHHHHHhhhc-----------------CCC-------CHHHHHHHHHHHh
Q 036165 428 NHG----------------------YCDEAIELFNQMEER-----------------KKL-------DHLSFTAVLTACC 461 (566)
Q Consensus 428 ~~~----------------------~~~~A~~~~~~~~~~-----------------~~~-------~~~~~~~l~~~~~ 461 (566)
+.- ...+..+........ ..| -...-+.++.+|+
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 211 111111111111100 000 0011234444555
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-----PDLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~ 536 (566)
..-+..+++..-+..... -+. ..|..|++.+....+.++|..+.++...+ -|..-+..+.+...+.+....
T Consensus 471 se~n~lK~l~~~ekye~~-lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d 546 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-LFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD 546 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence 544445555444433332 221 56888889899999999999998887622 344556777788888888888
Q ss_pred HHHHHHHHhh
Q 036165 537 AEIAAKHLSE 546 (566)
Q Consensus 537 A~~~~~~~~~ 546 (566)
+..+++.+.+
T Consensus 547 l~tiL~e~ks 556 (1088)
T KOG4318|consen 547 LSTILYEDKS 556 (1088)
T ss_pred HHHHHhhhhH
Confidence 8888888776
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.3e-09 Score=97.10 Aligned_cols=442 Identities=12% Similarity=0.070 Sum_probs=273.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChH
Q 036165 85 IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQ 161 (566)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 161 (566)
+.-+...+++..|..+++.....+-+-...+..-+..-+-+.|++++|...+..+.+ ++...|-.|.-++.--|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 566667889999999988877554322222333344556688999999999886654 45566777777777778888
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241 (566)
Q Consensus 162 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 241 (566)
+|..+-.+..+ +......++...-+.++-++-..+++.+.. +..---+|.......-.+.+|.+++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887666422 233333444555566776666666665533 22333445566555667889999999886
Q ss_pred CCC--hhhHHH-HHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhH
Q 036165 242 EKD--IVAMNA-MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318 (566)
Q Consensus 242 ~~~--~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 318 (566)
..+ -...|. +.-+|.+..-++-+.++++-.... ++.+....|.......+.=+-..|.+-...+.+.+-.. |
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 543 334443 334667777788888877776543 22233344433333333222222332233332221110 1
Q ss_pred HHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHH--
Q 036165 319 TSVISGLVHN-----FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL-- 391 (566)
Q Consensus 319 ~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 391 (566)
-.+.-.++. ..-+.|++++-.+.+. -|. .-..++-.|.+.+++++|..+.+.+.- ..|...+...+
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 112222222 3446777777666543 232 233455667888888888877655321 11222222222
Q ss_pred ---HHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 392 ---VDMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 392 ---~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
..-........-|...|+-.-+ .++..-.++...+.-..++++.+..+..+..-...|...-..+..+.+..
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh
Confidence 2222223346667777765543 33444556667777777899999999888877555555555678899999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHY-ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELAEIAA 541 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~ 541 (566)
|.+.+|+++|-++... .++ |..+| ..|.++|.++|+++-|++++-++....+..+...+| +-|.+.+++--|.+.|
T Consensus 407 gny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred cChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999887643 333 44445 467799999999999999999887555555555554 6799999999999999
Q ss_pred HHHhhhCCC
Q 036165 542 KHLSELEPE 550 (566)
Q Consensus 542 ~~~~~~~p~ 550 (566)
+.+..++|.
T Consensus 485 d~lE~lDP~ 493 (557)
T KOG3785|consen 485 DELEILDPT 493 (557)
T ss_pred hHHHccCCC
Confidence 988877763
No 57
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.6e-09 Score=98.50 Aligned_cols=446 Identities=11% Similarity=0.074 Sum_probs=243.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcc-hH-HHHHHHHHhc
Q 036165 80 AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH-RW-IALTGAYARR 157 (566)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~li~~~~~~ 157 (566)
..-+-++.+...+++++|.+....++..+ +.+...+..=+-...+.+++++|.++.+.-...... ++ ..-..++.+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 34445677788899999999999998887 455666667777788889999999777654432111 11 2234445578
Q ss_pred CChHHHHHHHHHhHHCCCCCCc-chHHHHHHHHcccCChhHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHH
Q 036165 158 GYHQEAVTVFHEMHIQGLKQNI-FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT-DAFVVSSLIDMYSKCGSVEKAKK 235 (566)
Q Consensus 158 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~ 235 (566)
+..++|+..++- ..++. .+...=...+.+.|++++|..+|+.+.+.+.+. +...-..++.+-.. -.+.
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~- 162 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ- 162 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-
Confidence 899999998873 33333 355555666788899999999999998876332 22222222222111 1111
Q ss_pred HHHhcCCCChhhHHH---HHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 236 VFDEMVEKDIVAMNA---MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 236 ~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
+.+........+|.. ..-.++..|++.+|+++++....-+.. .+. .++.. -.++-.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~-eEeie~el------ 223 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN-EEEIEEEL------ 223 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc-hhhHHHHH------
Confidence 233343332333333 334566788899998888876321100 000 00000 00000000
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHccCchHH--------------HHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI---LPACASAANMRR--------------GKEIHGC 375 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~~~~~~--------------a~~~~~~ 375 (566)
+ ..-..|..++...|+.++|..+|...++.. ++|....... +.++....++-. +......
T Consensus 224 -~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~ 300 (652)
T KOG2376|consen 224 -N-PIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSK 300 (652)
T ss_pred -H-HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHH
Confidence 0 011122233444455555555555554443 2222111111 111111111110 1111111
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHhhhcCCCC-HH
Q 036165 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTWNSMIFGCA--NHGYCDEAIELFNQMEERKKLD-HL 451 (566)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~-~~ 451 (566)
+.... .-....-+.++.+|. +.-+.+.++-....... ...+.+++..+. +......+.+++...-+..+.+ ..
T Consensus 301 Ls~~q-k~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~ 377 (652)
T KOG2376|consen 301 LSKKQ-KQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV 377 (652)
T ss_pred HHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH
Confidence 11110 101222234444443 45566666666655421 233444443332 2234677777777776654444 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCCH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFN--------MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-----TEPDL 518 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~ 518 (566)
.....+......|+++.|.+++. .+.+. +..| .+...++..|.+.++-+.|..++.+.. ..+..
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 56666677788999999999988 44433 4334 445667777888877666666665544 11222
Q ss_pred HHH----HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 519 FVW----GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 519 ~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
... .-+...-.++|+-++|..+++++++.+|++..+...+...|+.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 233 3333344578999999999999999999999999988888865
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=1.3e-08 Score=97.85 Aligned_cols=426 Identities=15% Similarity=0.155 Sum_probs=235.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 036165 81 YSERIEIYIRDRALQSGKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159 (566)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 159 (566)
+..-++...+++++...+..|+..++. .++....+|...+.+....|-++-+.+++++..+-++..-+-.|..+++.++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 344445555677777777777777666 3444556677777777777777777777777776666667777777777888
Q ss_pred hHHHHHHHHHhHHCC------CCCCcchHHHHHHHHcccCCh---hHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcC
Q 036165 160 HQEAVTVFHEMHIQG------LKQNIFVIPSVLKACGHLSDI---GTGEKIHSLVLKHSFGTD--AFVVSSLIDMYSKCG 228 (566)
Q Consensus 160 ~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g 228 (566)
+++|.+.+....... .+.+...|.-+-...++..+. -...++++.++.. -+| ...|.+|.+.|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 888777777765431 122333344433333332221 1223333333322 133 346788888888888
Q ss_pred CHHHHHHHHHhcCCC--ChhhHHHHHHHHHH----------------cC------ChhHHHHHHHHhhhCCC--------
Q 036165 229 SVEKAKKVFDEMVEK--DIVAMNAMVSGYVQ----------------RG------LATEALNLVEEIGTPRV-------- 276 (566)
Q Consensus 229 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~----------------~g------~~~~a~~~~~~m~~~~~-------- 276 (566)
++++|..+|++.... .+.-+..+-++|++ .| +++-.+.-|+.+.+.+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 888888888887443 22222222222221 11 11222333333332210
Q ss_pred ---CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036165 277 ---KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347 (566)
Q Consensus 277 ---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 347 (566)
+-+..+|..-+. ...|+..+....+.+..+. +.| -...|..+.+.|-.+|+.+.|..+|++..+-..+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 112222222222 2235555666666666543 222 2346777788888888888888888887654322
Q ss_pred CC---HHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-----------CC------cHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 348 PT---SATISSILPACASAANMRRGKEIHGCAIVMGV-----------EG------DLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 348 ~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
-- ..+|......-.+..+++.|..+++.+....- ++ +..++..+++.-...|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 22333334444456667777776665542111 11 234555566666677778888888
Q ss_pred HHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHH-HHHHHHHHHhc---cCChHHHHHHHHHhHHh
Q 036165 408 FDKMSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHL-SFTAVLTACCH---VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 408 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 479 (566)
++++.+- ++...-.....+-.+.-++++.++|++-+.. ..|+.. .|+..+.-+.+ ...++.|..+|+++.+
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 8877752 2111111122233455577788888877777 334432 56655554432 3357788888888876
Q ss_pred cCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 480 YKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 480 ~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|.+|... .|-.....=.+.|....|+++++++.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5665532 22222223334577777777777765
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=1.6e-09 Score=106.23 Aligned_cols=435 Identities=15% Similarity=0.073 Sum_probs=263.0
Q ss_pred CCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcch-HH
Q 036165 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV-IP 183 (566)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~ 183 (566)
.+..++.+|..+.-+..++|+++.+-+.|++... .....|+.+...+...|.-..|+.+++.-......|+..+ +-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567888999999999999999999999987765 3456788888899999998999999888766543344443 33
Q ss_pred HHHHHHc-ccCChhHHHHHHHHHHHcC--C--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhcCCC---C
Q 036165 184 SVLKACG-HLSDIGTGEKIHSLVLKHS--F--GTDAFVVSSLIDMYSKC-----------GSVEKAKKVFDEMVEK---D 244 (566)
Q Consensus 184 ~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~---~ 244 (566)
..-..|. +.+..+++..+..++++.. . ......+-.+.-+|... ....++++.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333343 4466777777777766621 1 11222333333333321 1234555666665332 3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 324 (566)
+.+.-.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. ...|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhh
Confidence 33333344456666777777777777766654556666766666666777777777777665443 01111111122222
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CH
Q 036165 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG---FI 401 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 401 (566)
-..-++.++++.+..+++.- .-+...+...+. .|....-..-+..... .....+.++..+.......+ ..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhccc
Confidence 33356666666666555431 000000000000 1100000000000000 11112233333322222111 11
Q ss_pred HHHHHHHHhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036165 402 SEARTLFDKMSERN------TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 402 ~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
+.....+.....|+ ...|......+...++.++|...+.+.....+.....|......+...|..++|.+.|..
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111111111233 224556667788889999999888888887777888888888889999999999999998
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 476 MQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYE--MIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 476 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
... +.|+ +....++..++.+.|+..-|.. ++..+. ...+...|..+...+.+.|+.+.|..-|..+.++++.
T Consensus 710 Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 710 ALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 874 4555 5678899999999998777766 888876 3457889999999999999999999999999999887
Q ss_pred Cch
Q 036165 551 SAA 553 (566)
Q Consensus 551 ~~~ 553 (566)
+|.
T Consensus 787 ~PV 789 (799)
T KOG4162|consen 787 NPV 789 (799)
T ss_pred CCc
Confidence 764
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=3e-08 Score=95.37 Aligned_cols=482 Identities=13% Similarity=0.165 Sum_probs=280.1
Q ss_pred hhhhhHHHHHHhhhhhhhhhcccccchhhcccchhhhhhhhhhcccccccCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 036165 23 DFYSIRRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHA 102 (566)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 102 (566)
.++.++..|......|.+++...+.-+.+++.+ + ..-+...|...++.....+-++.+..+++
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL------------p-----vtqH~rIW~lyl~Fv~~~~lPets~rvyr 162 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRAL------------P-----VTQHDRIWDLYLKFVESHGLPETSIRVYR 162 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhC------------c-----hHhhccchHHHHHHHHhCCChHHHHHHHH
Confidence 456777788877777776666555433322222 1 11223345666666667777888888888
Q ss_pred HHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC----------CCcchHHHHHHHHHhcCChHHH---HHHHHH
Q 036165 103 QLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK----------TNIHRWIALTGAYARRGYHQEA---VTVFHE 169 (566)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A---~~~~~~ 169 (566)
+.++- +|...+..|..+++.+++++|.+.+..+.. .+-..|+.+-...+++-+.-.. ..+++.
T Consensus 163 RYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 163 RYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred HHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 88763 455577888888888998888888877654 1333566655555554333222 223333
Q ss_pred hHHCCCCCCc--chHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----------------C---
Q 036165 170 MHIQGLKQNI--FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC----------------G--- 228 (566)
Q Consensus 170 m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------------g--- 228 (566)
+.. .-+|. ..|.+|...|.+.|.++.|..++++.+..-. ...-++.+-+.|... |
T Consensus 239 gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 239 GIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred hcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh
Confidence 322 22332 3567777777777777777777777665421 222222222222211 1
Q ss_pred ---CHHHHHHHHHhcCCC---------------ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc------HHHHH
Q 036165 229 ---SVEKAKKVFDEMVEK---------------DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------VVTWN 284 (566)
Q Consensus 229 ---~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~ 284 (566)
+++-...-|+.+..+ ++..|..-+. +..|+..+-...+.+.... +.|. ...|.
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWV 391 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHH
Confidence 233333444444222 2233333222 2345666666667666532 2221 23467
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP------------- 348 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------------- 348 (566)
.+...|-..|+++.|..+|++..+-..+-- ..+|..-...-.+..+++.|+++++......-.|
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 778888899999999999998876543322 3455555555666778888888887765321111
Q ss_pred ----CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh-hHH
Q 036165 349 ----TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----RNT-VTW 419 (566)
Q Consensus 349 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~ 419 (566)
+...+...+..--..|-++....+++.+++..+- ++.+.......+-...-++++.+++++-.. |++ ..|
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 1123344444555677888888899999887665 555555555666677778999999988775 554 357
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHhhhcCCCCHHH--HHHHHHHHhccCChHHHHHHHHHhHHh---------------
Q 036165 420 NSMIFGCAN---HGYCDEAIELFNQMEERKKLDHLS--FTAVLTACCHVGLVELGQRLFNMMQEK--------------- 479 (566)
Q Consensus 420 ~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------- 479 (566)
+.-+.-+.+ ....+.|..+|++..+..+|...- |......--+-|....|+.+++++...
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 766655543 235889999999999876665432 322222233456666677776665432
Q ss_pred -----cCCCCChhHHHHH----------------HHHHHhcCCHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCC
Q 036165 480 -----YKIMPRTEHYACM----------------VDLLGRAGRLAEAYEMIKTMS--TEP--DLFVWGALLGACKNHGN 533 (566)
Q Consensus 480 -----~~~~p~~~~~~~l----------------~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~ 533 (566)
+|+.-+..+|.-- .+.=.+.|..+.|..++.-.. ..| +...|.+.=.--.++|+
T Consensus 631 kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 631 KAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 2333333333221 122234566666666665433 123 45556666666667776
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-08 Score=92.84 Aligned_cols=299 Identities=11% Similarity=-0.017 Sum_probs=212.2
Q ss_pred HHHHcCChhHHHHHHHHhhhC-CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCh
Q 036165 254 GYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCN 331 (566)
Q Consensus 254 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 331 (566)
+.+-.++...+...+-.+... -.+-|......+...+...|+.++|...|+..... .|+. .......-.+...|+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 334455555555554444332 23445666777777888888888888888776644 2221 1111222234566777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
+....+...+.... .-+...+..-+......++++.|..+-++.++.... +...+-.-..++...|+.++|.-.|+..
T Consensus 283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHH
Confidence 77777776665432 122222333333445567778888887777765543 5556666667888899999999999876
Q ss_pred CC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHH-HHHh-ccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 412 SE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL-TACC-HVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 412 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
.. -+..+|.-|+.+|...|.+.+|.-+-+......+.+..+...+. .+|. ....-++|.++++... .+.|+.
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y 437 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIY 437 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCcc
Confidence 64 46789999999999999999999988888877777888877774 4443 3334588899988877 456764
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 487 -EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 487 -~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
...+.+...+...|+.+++..++++.. ..||....+.|...+...+.+++|+..|..++.++|++.....-|-
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 455677889999999999999999987 5699999999999999999999999999999999999977665543
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.2e-11 Score=108.55 Aligned_cols=240 Identities=12% Similarity=0.030 Sum_probs=204.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (566)
+.+..+|.+.|.+.+|...|+.-++. .|-..||..+-++|.+..+.+.|..++.+-++.- +-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67888999999999999999988876 5777788889999999999999999998877753 33555566778888889
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036165 399 GFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
++.++|.++++...+ .++....++...|.-.++++-|+..|+++.+....++..|+.+.-+|...+++|-++..|.+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999998876 46667777788899999999999999999999888999999999999999999999999999
Q ss_pred hHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 476 MQEKYKIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 476 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
+... .-.|+ .++|-.+.....-.|++.-|.+.|+-... ......++.|.-.-.+.|+.++|..++..+-...|+.
T Consensus 384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9875 44444 47888999999999999999999998772 3456788999888899999999999999999999998
Q ss_pred chHHHHHHHHH
Q 036165 552 AANNMLLTDLY 562 (566)
Q Consensus 552 ~~~~~~l~~~~ 562 (566)
.+...+|+-+-
T Consensus 463 ~E~~~Nl~~~s 473 (478)
T KOG1129|consen 463 AEVTTNLQFMS 473 (478)
T ss_pred cccccceeEEe
Confidence 87776665443
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=1.2e-10 Score=105.99 Aligned_cols=199 Identities=15% Similarity=0.107 Sum_probs=158.9
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 036165 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIF 424 (566)
Q Consensus 348 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 424 (566)
.....+..+...+...|++++|...++.+.+..+. +...+..+...|...|++++|...+++..+ .+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34566778888889999999999999998876533 567778888899999999999999987764 34567777888
Q ss_pred HHHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 425 GCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 425 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
.+...|++++|.+.+++..+. .+.....+..+..++...|++++|...+++.... .+.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 888999999999999998875 2334556777888889999999999999998864 233466788888999999999
Q ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 503 AEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 503 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
++|...+++.. .+.+...+..+...+...|+.++|....+.+.+..|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999998876 234566777777888889999999998888776654
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=3.1e-10 Score=103.21 Aligned_cols=197 Identities=10% Similarity=0.047 Sum_probs=161.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 345677888889999999999999999988753 445667788888899999999999999999887644 556777888
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 393 DMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
..+...|++++|...+++..+ .....+..+...+...|++++|...+++..+..+.+...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 899999999999999998764 234466777888889999999999999988876667778888899999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998875 24456667778888889999999988877654
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=6.2e-10 Score=108.37 Aligned_cols=235 Identities=15% Similarity=0.127 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC-CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 036165 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAK-----GV-EPDVV-SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353 (566)
Q Consensus 281 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 353 (566)
.+...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++...-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~-------- 271 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR-------- 271 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--------
Confidence 45555667777777777777777665443 10 11111 12234445555556666665555554310
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-HHH
Q 036165 354 SSILPACASAANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSE----------RNTV-TWN 420 (566)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~ 420 (566)
+.. .|.. .-..+++.|..+|.+.|++++|...+++..+ +.+. .++
T Consensus 272 --------------------e~~--~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 272 --------------------EEV--FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred --------------------HHh--cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 000 1111 1133455555666666666666655554432 2222 355
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhc----CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhc----C-CCCC-h
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEER----KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKY----K-IMPR-T 486 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~ 486 (566)
.+...+...+++++|..++++..+. ..++ ..+++.|...+...|++++|.+++++++... | ..+. .
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 5666777888888888888876655 2222 2478999999999999999999999887652 1 1222 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS--------TEPD-LFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
..++.|...|.+.+++++|.++|.+.. ..|+ ..+|..|...|.+.|++++|+++.+.+.
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 567788888999999998888887765 1233 4678899999999999999999998887
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=2.6e-10 Score=116.51 Aligned_cols=242 Identities=10% Similarity=0.012 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036165 295 DQVMVSKLFQLMRAKGVEP-DVVSWTSVISGLVHN---------FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 364 (566)
++++|.+.+++..+. .| +...|..+..++... +++++|...+++..+.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 355666666666654 33 234454454444321 23566666666666543 334455555556666666
Q ss_pred chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHhcCChHHHHHHHHH
Q 036165 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTV-TWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
++++|...++++++.++. +...+..+...+...|++++|...+++..+ |+.. .+..++..+...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 666666666666665533 444555666666666666666666666554 3221 222333344455666666666666
Q ss_pred hhhcCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC----CC
Q 036165 442 MEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS----TE 515 (566)
Q Consensus 442 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 515 (566)
+.+..+| ++..+..+..++...|++++|...++++... .|+ ....+.+...|...| ++|...++++. ..
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 6554333 3344555566666666666666666665432 232 223344444555555 35555554443 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+....+ +...+.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222222 22334445555555444 5555544
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=2.4e-09 Score=106.33 Aligned_cols=268 Identities=15% Similarity=0.092 Sum_probs=193.4
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCC
Q 036165 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175 (566)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 175 (566)
++..+...|+.|+..+|..+|.-|+..|+++.|- +|.-|.-. +...++.++.+..++++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455667899999999999999999999999998 88877653 4557889998888888877665
Q ss_pred CCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHH
Q 036165 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAMNAMVS 253 (566)
Q Consensus 176 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~ 253 (566)
.|...||..++.+|...||+..-..+-+.+ ..+...+...|.-.....++..+. ......-...+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdL------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il 147 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDL------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL 147 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHH------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH
Confidence 678889999999999999976622222212 224445555666555555665541 112222234455
Q ss_pred HHHHcCChhHHHHHHHHhhhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 036165 254 GYVQRGLATEALNLVEEIGTPR-VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332 (566)
Q Consensus 254 ~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 332 (566)
-..-.|-++.+++++..+.... ..|-.+ +++-+..... ..+++........-.|++.+|.+++.+-..+|+.+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 5667788888888887765321 122222 3555444332 23333333332212689999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 036165 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400 (566)
Q Consensus 333 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 400 (566)
.|..++.+|.+.|++.+.+-|-.++-+ .++...+..++.-|...|+.|+..++...+....+.|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999999888777766 88889999999999999999999999888777777555
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=7.9e-08 Score=94.65 Aligned_cols=406 Identities=13% Similarity=-0.008 Sum_probs=239.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCc-hhHHHHHH
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFVVSSLI 221 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~ 221 (566)
+...|..+.-++...|+++.+.+.|++.... ..-....|..+-..+...|.-..|..+++........|+ ...+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4555667777888888888888888887654 333555677777777777777778888777665443343 33333333
Q ss_pred HHHH-hcCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHHc-----------CChhHHHHHHHHhhhCC-CCccH
Q 036165 222 DMYS-KCGSVEKAKKVFDEMVE--------KDIVAMNAMVSGYVQR-----------GLATEALNLVEEIGTPR-VKPNV 280 (566)
Q Consensus 222 ~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~-~~p~~ 280 (566)
..|. +.+.+++++.+-.+... -....|..+.-+|... ....++++.+++..+.+ -.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3333 33555555554444422 1233444444444332 12345666777765543 23444
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036165 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360 (566)
Q Consensus 281 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 360 (566)
..|.. --|+..++++.|.+..++..+.+-..+...|..+...+...+++.+|+.+.+...+.- .-|......-+..-
T Consensus 481 if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 481 IFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 43333 3455567788888888887777666677778877777888888888888777765431 11111111112222
Q ss_pred HccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHH
Q 036165 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE------RNTVTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 434 (566)
...++.+++......+... |... ......++-....+....+.- ..+.++..+.......+....
T Consensus 558 ~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 2244444444433333221 0000 000011112222233322221 122233333222221111100
Q ss_pred HHHHHHHhhhc-CC--CC------HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 435 AIELFNQMEER-KK--LD------HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 435 A~~~~~~~~~~-~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
-... +... .. |+ ...|......+.+.+..++|...+.++... .+.....|.-....+...|++++|
T Consensus 629 se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 629 SELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHH
Confidence 0000 2222 22 22 123556667788899999999888888753 445667788888899999999999
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 506 YEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEI--AAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 506 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+.|.... ..| ++....++...+.+.|+..-|.. ++..+++++|.++.++..||.++.++|
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 99998877 455 57788999999999999888888 999999999999999999999998887
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=4.8e-08 Score=87.24 Aligned_cols=427 Identities=11% Similarity=0.007 Sum_probs=256.0
Q ss_pred HHHHhhcCChHHHHHHhccCCCC---CcchHHH-HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh
Q 036165 120 ITFYTECQNIHHARMLFDEIPKT---NIHRWIA-LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195 (566)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 195 (566)
+.-+....++..|+.+++--..- ...+.+. +..++.+-|++++|+..+.-+.+. -.|+......+.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 33445567888888887643321 1112222 345667789999999999888775 355566666666666667888
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCC
Q 036165 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 196 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
.+|+.+-.+. +.++-....|.+...+.|+-++-..+-+.+.+.. .---+|.+.....-.+.+|++++.+....
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 8888776553 2334444556666777788777777666664432 22334555555566789999999988764
Q ss_pred CCccHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 036165 276 VKPNVVTWNTLI-SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354 (566)
Q Consensus 276 ~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 354 (566)
.|.-...|.-+ -+|.+..-++-+.++++-..+. ++.++..-|.......+.=.-..|..-.+.+.+.+-..-+..-.
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 34555555444 3455677778888888777665 33344555555544444333334444455554443211111111
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC----
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG---- 430 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---- 430 (566)
.+-.-+.--.+-+.|.+++--+.+. -+.....|+--|.+.+++.+|..+.++....++.-|-.-.-.++..|
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1111111223456677766655543 22334457777899999999999998887544444433333333333
Q ss_pred ---ChHHHHHHHHHhhhc-CC-CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 431 ---YCDEAIELFNQMEER-KK-LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 431 ---~~~~A~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
...-|.+.|+-.-++ .. ....--.++.+++.-..++++++.+++.+..- -...|.. --.+..+++..|.+.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~F-n~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDF-NLNLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchh-hhHHHHHHHHhcChHHH
Confidence 244455555555444 22 22223455666666677899999999988764 2222333 33578999999999999
Q ss_pred HHHHHhcCC--CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhhC-C-CCchHHHHHHHHHhhc
Q 036165 506 YEMIKTMST--EPDLFVWGALL-GACKNHGNIELAEIAAKHLSELE-P-ESAANNMLLTDLYANA 565 (566)
Q Consensus 506 ~~~~~~~~~--~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~ 565 (566)
.++|-++.. -.|..+|.+++ ++|.+.|+++.|..++ ++.+ | +.......+++.+.++
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHH
Confidence 999988762 24667776655 7788999999887665 4332 2 3344555556655443
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=3.3e-08 Score=97.75 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=171.4
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----
Q 036165 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---- 227 (566)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---- 227 (566)
..+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3455667777777777664332 33333444555566667777777777777777765 34444445555444222
Q ss_pred -CCHHHHHHHHHhcCCCC--hhhHHHHHHHHHHcCChh-HHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 036165 228 -GSVEKAKKVFDEMVEKD--IVAMNAMVSGYVQRGLAT-EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303 (566)
Q Consensus 228 -g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 303 (566)
.+.+...++++++.... ..+...+.-.+.....+. .+...+..+..+|+++ +|+.|-..|......+-..+++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 24556666666663321 111111111111111222 3344555666677654 3444545555444444455555
Q ss_pred HHHHHc----C----------CCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCch
Q 036165 304 QLMRAK----G----------VEPDVV--SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT-SATISSILPACASAANM 366 (566)
Q Consensus 304 ~~~~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 366 (566)
...... + -.|+.. ++.-+...|...|++++|++++++.+++ .|+ ...|..-...+-..|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 554321 1 123332 3355566777888888888888888876 455 45677777888888888
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------HH--HHHHHHHHhcCChHH
Q 036165 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV----------TW--NSMIFGCANHGYCDE 434 (566)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~~ 434 (566)
++|...++.+...... |..+-+..+..+.++|++++|..++....+++.. .| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888888876654 6677777788888888998888888777654311 22 234667888888888
Q ss_pred HHHHHHHhhhc
Q 036165 435 AIELFNQMEER 445 (566)
Q Consensus 435 A~~~~~~~~~~ 445 (566)
|++.|..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887777665
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=6.1e-10 Score=113.84 Aligned_cols=234 Identities=13% Similarity=0.044 Sum_probs=172.6
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc---------cCchHHHHHHHHHHHH
Q 036165 314 DVVSWTSVISGLVH-----NFCNDEAFDTFKEMLSQGFCPT-SATISSILPACAS---------AANMRRGKEIHGCAIV 378 (566)
Q Consensus 314 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 378 (566)
+...|...+++... .+..++|...|++..+. .|+ ...+..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455555554322 23467999999999875 454 4455555555442 2347899999999998
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHH
Q 036165 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455 (566)
Q Consensus 379 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 455 (566)
..+. +...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+..+.+...+..
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 7654 677888888999999999999999998875 4 45678888899999999999999999999875555555555
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH-HHHHHHHHHHhcC
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF-VWGALLGACKNHG 532 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~g 532 (566)
++..+...|++++|...++++... . +| ++..+..+..+|...|++++|...++++. ..|+.. .++.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 555677789999999999998765 2 34 45567788899999999999999999876 334433 3455556677777
Q ss_pred CHHHHHHHHHHHhh---hCCCCchH
Q 036165 533 NIELAEIAAKHLSE---LEPESAAN 554 (566)
Q Consensus 533 ~~~~A~~~~~~~~~---~~p~~~~~ 554 (566)
++|...++++++ ..|.++..
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH
Confidence 488888888775 34555544
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.6e-11 Score=80.13 Aligned_cols=50 Identities=40% Similarity=0.699 Sum_probs=40.7
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc
Q 036165 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292 (566)
Q Consensus 243 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 292 (566)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57778888888888888888888888888888888888888888887764
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=4.9e-10 Score=98.60 Aligned_cols=227 Identities=13% Similarity=0.090 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036165 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328 (566)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 328 (566)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+.+.|+.++.+-.+. ++.++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45556666666666666666655443 445555655666666666666666666655544 222333334445555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 329 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
++.++|.++|+...+.. +.+......+...|.-.++.+.|..++..+++.|+. ++..
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speL--------------------- 360 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPEL--------------------- 360 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHH---------------------
Confidence 66666666666655442 233333444444444455555555555555555544 4444
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 036165 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 485 (566)
|+.+.-+|...++++-++.-|++.... ..|+. ..|-.+.......||+..|.+.|+..... -.-.
T Consensus 361 ----------f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h 428 (478)
T KOG1129|consen 361 ----------FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQH 428 (478)
T ss_pred ----------HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--Ccch
Confidence 444444444444555555555554444 22322 23445555555555555555555555432 1223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 486 TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...++.|.-.-.+.|+.++|..+++.+.
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 3445555555555555555555555444
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.4e-11 Score=80.38 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=45.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcc
Q 036165 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191 (566)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 191 (566)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998864
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=9.1e-09 Score=100.38 Aligned_cols=232 Identities=21% Similarity=0.216 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-hHHHHHHHHHHcCChhHHHHHHHHhhh-----CC-CCc
Q 036165 216 VVSSLIDMYSKCGSVEKAKKVFDEMVE----------KDIV-AMNAMVSGYVQRGLATEALNLVEEIGT-----PR-VKP 278 (566)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p 278 (566)
+...+...|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++.. .| ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444466666666777776666665522 1222 234566778888888888888888753 11 112
Q ss_pred -cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCC-CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036165 279 -NVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-----GVE-PD-VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350 (566)
Q Consensus 279 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 350 (566)
-..+++.|..+|.+.|++++|...++...+. |.. |. ...++.++..+...+++++|..+++...+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i------ 354 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI------ 354 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH------
Confidence 2345666677777777777777666654331 100 01 112233333444444444444444433221
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----Chh
Q 036165 351 ATISSILPACASAANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSE-------R----NTV 417 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~ 417 (566)
+... .|.. .-..+++.|...|.+.|++++|.++++++.. . .-.
T Consensus 355 ----------------------~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 355 ----------------------YLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred ----------------------HHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 0000 0110 1234556666666666666666666655442 0 112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER---KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.++.|...|.+.+++.+|.++|.+...- ..|+ ..+|..|..+|...|+++.|+++.+.+.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555555555555555555543221 1111 1245555555555555555555555443
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=8.4e-09 Score=96.48 Aligned_cols=226 Identities=12% Similarity=0.005 Sum_probs=150.4
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 329 FCNDEAFDTFKEMLSQG-FCPT--SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 329 g~~~~A~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
+..+.++.-+.+++... ..|+ ...+......+...|+.+.|...+...++..+. +...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666676666432 1222 234666666777888888888888887776543 6778888888899999999999
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 036165 406 TLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482 (566)
Q Consensus 406 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 482 (566)
..|++..+ | +..+|..+..++...|++++|.+.|++..+..+.+.. .......+...+++++|...+++.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~--~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEK--L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence 98888765 4 4567777888888889999999999998876554442 122222344567889999999776543 3
Q ss_pred CCChhHHHHHHHHHHhcCCHHH--HHHHHHhcCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-CCch
Q 036165 483 MPRTEHYACMVDLLGRAGRLAE--AYEMIKTMST-E-----PDLFVWGALLGACKNHGNIELAEIAAKHLSELEP-ESAA 553 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 553 (566)
.|+...+ .++. ...|+..+ +.+.+.+... . .....|..+...+.+.|++++|+..|+++++.+| +.+.
T Consensus 196 ~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3333222 2332 33454433 3333332221 1 1345788889999999999999999999999986 5565
Q ss_pred HHHHHHHH
Q 036165 554 NNMLLTDL 561 (566)
Q Consensus 554 ~~~~l~~~ 561 (566)
+...+..+
T Consensus 273 ~~~~~~e~ 280 (296)
T PRK11189 273 HRYALLEL 280 (296)
T ss_pred HHHHHHHH
Confidence 55555444
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.1e-08 Score=86.17 Aligned_cols=200 Identities=14% Similarity=0.027 Sum_probs=134.4
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGY 431 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 431 (566)
.+.-.|...|+...|..-+++.++..+. +..++..+...|.+.|+.+.|.+.|++..+ .+-...|....-+|.+|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 3444555566666666666666555433 455666666777777777777777776553 344566666666777777
Q ss_pred hHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 432 CDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 432 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
+++|...|++.... ......+|..+.-+..+.|+.+.|...|++..+. .+-.+.....+.....+.|++..|..++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 77777777777765 3444567777777777788888888888877764 2223455666777777888888887777
Q ss_pred HhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 510 KTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 510 ~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
++.. ..++..+..--|+.-.+.||.+.+.+.=.++....|..+.+-..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 7765 33666777777777778888887777777777778877665443
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.5e-07 Score=83.63 Aligned_cols=284 Identities=10% Similarity=-0.031 Sum_probs=202.6
Q ss_pred CCccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-
Q 036165 276 VKPNVVTWNTLISGFS--KSGDQVMVSKLFQLMRA-KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA- 351 (566)
Q Consensus 276 ~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~- 351 (566)
++|...+...-+.+++ -.++...+...+-.+.. .-+.-|+.....+..++...|+.++|+..|++.... .|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 3444444444444433 34444444444444433 335667888899999999999999999999998754 34433
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 036165 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCAN 428 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 428 (566)
........+...|+.+....+...+....-. +...+..-+......++++.|..+-++..+ .++..+-.-...+.+
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 2333444556778888877776666543211 222333334445566789999999888775 445556555678889
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHhc-CCHHHHH
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV-DLLGRA-GRLAEAY 506 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~-g~~~~A~ 506 (566)
.+++++|.-.|+..+...|-+..+|..|+++|...|.+.+|...-+..... ++-+..+...+. ..+.-. .--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999998877788999999999999999999999888877764 445666665553 334332 3457899
Q ss_pred HHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 507 EMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 507 ~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
+++++.. .+|+ ....+.+...|...|..++++.++++.+...||+ ..+..|+.++..+
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 9999987 5676 4456777788999999999999999999999866 6799999998765
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=2.3e-07 Score=91.81 Aligned_cols=251 Identities=13% Similarity=0.082 Sum_probs=117.4
Q ss_pred HHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hh-hHHHHHHHHHHc-----C
Q 036165 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD--IV-AMNAMVSGYVQR-----G 259 (566)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~li~~~~~~-----g 259 (566)
.+...|++++|.+.++.-.+. +.............+.+.|+.++|..++..+.+.| -. -|..+..+..-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 344566666666666554333 33344455566666666666666666666664432 22 233333333222 1
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV-MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 338 (566)
+.+....+|+++... -|.......+.-.+.....+. .+...+..+...|+++ +|+.+-..|....+.+-...++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 345555566655443 233333322222222212222 2334444445555433 4444444444444444444444
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 036165 339 KEMLSQ----G----------FCPTS--ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402 (566)
Q Consensus 339 ~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 402 (566)
...... + -+|+. .++..+...|...|++++|.++.+..++..+. .+..|..-...|-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 443321 0 01222 12333444455555555555555555554322 2445555555555555555
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 403 EARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
+|.+.++.... .|...-+-.+..+.+.|+.++|.+++....+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 55555554443 23333444444555555555555555555443
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=4.9e-06 Score=80.78 Aligned_cols=450 Identities=13% Similarity=0.092 Sum_probs=279.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCC---CcchHHHHHHHHHhc
Q 036165 81 YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT---NIHRWIALTGAYARR 157 (566)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 157 (566)
|..+++.| ..+.+..+....+.+++. .+..+.+....--.+...|+-++|......-... +.+.|..+.-.+...
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44444444 445566666666666663 3333333333333345568888998888766654 456798888888888
Q ss_pred CChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237 (566)
Q Consensus 158 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 237 (566)
.++++|++.|+.....+ +-|...+.-+--.-++.|+++..........+.. +.....|..+..++.-.|+...|.+++
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988753 2244455544444567788888877777777653 334556777888888889999999998
Q ss_pred HhcCC-----CChhhHHHH------HHHHHHcCChhHHHHHHHHhhhCCCCccHHH-HHHHHHHHhcCCCHHHHHHHHHH
Q 036165 238 DEMVE-----KDIVAMNAM------VSGYVQRGLATEALNLVEEIGTPRVKPNVVT-WNTLISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 238 ~~~~~-----~~~~~~~~l------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~ 305 (566)
++..+ ++...+... .....+.|..++|++-+..-... ..|... -..-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 88732 333333322 23456678888888877664322 222222 23344567788999999999999
Q ss_pred HHHcCCCCChhhHHHHH-HHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHccCchHHHHHHHHHHHHhCCC
Q 036165 306 MRAKGVEPDVVSWTSVI-SGLVHNFCNDEAF-DTFKEMLSQGFCPTSATISSI-LPACASAANMRRGKEIHGCAIVMGVE 382 (566)
Q Consensus 306 ~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~ 382 (566)
++.. .||...|.... .++.+-.+..++. .+|....+. .|.......+ +.......-.+....++....+.|++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9887 56666665544 4443333334444 666665443 1211111111 11111222334445666777777766
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHH----HHhcC--------------CCChhHH--HHHHHHHHhcCChHHHHHHHHHh
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTL----FDKMS--------------ERNTVTW--NSMIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~--------------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~ 442 (566)
+ ++..+...|-.-...+-..++ ...+. .|....| -.++..+-..|+++.|..+++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 333333333322111111111 11111 1344444 44677788899999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-C----
Q 036165 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP-D---- 517 (566)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~---- 517 (566)
..+.|.-..-|..=.+.+.+.|++++|..++++..+. ..+|...-..-+.-..++.+.++|.++........ +
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 9876666667877788999999999999999999864 24565555466777889999999999987766222 1
Q ss_pred ----HHHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 036165 518 ----LFVWGALL--GACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 518 ----~~~~~~l~--~~~~~~g~~~~A~~~~~~~~ 545 (566)
...|-.+- .+|.+.|++..|.+-+..+.
T Consensus 476 L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 476 LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 22343333 55778888877776665554
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=3.8e-09 Score=97.23 Aligned_cols=226 Identities=14% Similarity=0.033 Sum_probs=133.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHh
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAK 397 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 397 (566)
..+.+++...|+++.++. ++.... .|.......+...+...++-+.+..-++........ .+..+......++..
T Consensus 39 ~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 334455555555543332 222222 444444444444333333333333333222222212 233333344456667
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH----hccCChHHHHHHH
Q 036165 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC----CHVGLVELGQRLF 473 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~ 473 (566)
.|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++ ...+.+.+|..+|
T Consensus 115 ~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD-~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 115 EGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID-ED-SILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp CCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CC-HHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc-HHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 78888888887765 456666677788888888888888888887642 22 3333333333 2234688888888
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhCCC
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNI-ELAEIAAKHLSELEPE 550 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~ 550 (566)
+++.++ ..+++.+.+.+..++...|++++|.+++++.. .+.++.++..++-+....|+. +.+.+.+.++...+|+
T Consensus 191 ~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 191 EELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 888763 56778888888888888899999988888876 224566777777777777776 6777888888888887
Q ss_pred CchH
Q 036165 551 SAAN 554 (566)
Q Consensus 551 ~~~~ 554 (566)
.+-.
T Consensus 269 h~~~ 272 (290)
T PF04733_consen 269 HPLV 272 (290)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 7543
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=3.7e-08 Score=83.04 Aligned_cols=200 Identities=12% Similarity=0.024 Sum_probs=164.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (566)
...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+++++..+. +..+.|...-.+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4456667888999999999999888874 455667888888888999999999999998887654 77888999999999
Q ss_pred cCCHHHHHHHHHhcCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 398 CGFISEARTLFDKMSE-RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.|++++|...|++... |+ ..+|..+.-+..+.|+.+.|.+.|++..+..+....+...+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 9999999999998875 32 457888888888999999999999999998888888999999999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHH
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVW 521 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 521 (566)
++..... + .++....-..|+.-.+.|+-+.|-+.=.... .-|....+
T Consensus 196 ~~~~~~~-~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 196 LERYQQR-G-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHhc-c-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999876 3 4888888888888889999888876655443 22444433
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.1e-06 Score=89.12 Aligned_cols=429 Identities=13% Similarity=0.109 Sum_probs=243.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChH
Q 036165 82 SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQ 161 (566)
Q Consensus 82 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 161 (566)
..+...+-+.+++..-...++..++.|. .++.++|+|...|...++-.+- .+.+ |..-=+..+.-|+..+++-
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLke----N~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKE----NPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hccc----CCcchhhHHhhhhcccCCc
Confidence 4556666778888888888999999886 6889999999999887653321 1111 1111112222233333322
Q ss_pred HHHHHHHHhHHC----CC----------------CCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCC--CchhHHHH
Q 036165 162 EAVTVFHEMHIQ----GL----------------KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG--TDAFVVSS 219 (566)
Q Consensus 162 ~A~~~~~~m~~~----g~----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~ 219 (566)
-|.-.|++=.-. ++ .-|...|..++.- .-.--++++++.++.+++ .|+.-.+.
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 221111110000 00 0122223322210 011122344444444432 23344445
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCChh-----hHHH---------------------------HHHHHHHcCChhHHHH
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMV-EKDIV-----AMNA---------------------------MVSGYVQRGLATEALN 266 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~---------------------------li~~~~~~g~~~~a~~ 266 (566)
-+.++...+-..+-.++++++. ++++. .-|. +......++-+++|+.
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHH
Confidence 5566666666666666666652 22111 1122 2233344455566666
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036165 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346 (566)
Q Consensus 267 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 346 (566)
+|++.. .+....+.|+.- -++++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+
T Consensus 1070 ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyik------ 1129 (1666)
T KOG0985|consen 1070 IFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIK------ 1129 (1666)
T ss_pred HHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHh------
Confidence 665532 233333333332 345555555554432 456788888888888998888887754
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 036165 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426 (566)
Q Consensus 347 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 426 (566)
.-|+..|..++..+.+.|.+++...++..+.+..-.|.+ -..|+-+|++.+++.+-++++. .||..-...+..-|
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRC 1204 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHH
Confidence 246677889999999999999999988888877665554 3568888999988887776543 36766667777777
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 506 (566)
...+.++.|.-+|..+ ..|..|...+...|++..|...-+++- +..+|.-+-.+|...+.+.-|.
T Consensus 1205 f~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred hhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhchhhhhHHH
Confidence 7777777776666543 346666666677777766665544332 4455665555555554443332
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
-.=-.+ ---..-...++..|...|-+++-+.+++..+.+.--.-..+.-|+-+|++
T Consensus 1270 iCGL~i--ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1270 ICGLNI--IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hcCceE--EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 110000 01223345566666666777777777777666665566666666666654
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=1.1e-06 Score=85.14 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=53.8
Q ss_pred CCChhHHH--HHHHHHHhcCCHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 483 MPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMST-EPDL-FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 483 ~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+|+...|. .++..|-+.|+++.|...++.+.. .|+. ..|..-.+.+...|+.++|...++++.+++-.|.-..
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 45555444 567888899999999999998873 3553 3455555778888999999999999998875554444
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=5.6e-07 Score=80.31 Aligned_cols=312 Identities=14% Similarity=0.079 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHH---HHHHHcCChhHHHHHHHHhhhCCCCccHHHH-HHHHHHHhc
Q 036165 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV---SGYVQRGLATEALNLVEEIGTPRVKPNVVTW-NTLISGFSK 292 (566)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~ 292 (566)
.--+...+...|++.+|+..|...++-|+..|.++. ..|...|+..-|+.-+.+..+. +||-..- ..-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 344667777888999999999999888888777664 4677888888888888877764 6664322 223455678
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 036165 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372 (566)
Q Consensus 293 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 372 (566)
.|.++.|..=|+.+++.. |+..+- ..++.+.-..++-. .....+..+...|+...++..
T Consensus 119 ~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHH
Confidence 899999999898888763 211110 00111100011111 112222333445555555555
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 036165 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449 (566)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 449 (566)
...+++..+ .+...+..-..+|...|++..|+.-++...+ .+..++--+-..+-..|+.+.++...++..+. .||
T Consensus 178 i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-dpd 255 (504)
T KOG0624|consen 178 ITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-DPD 255 (504)
T ss_pred HHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-Ccc
Confidence 555555432 2555555555666666666666554443332 34444444445555555555555555554442 222
Q ss_pred HH-H---HHHH---------HHHHhccCChHHHHHHHHHhHHhcCCCCC--h---hHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 450 HL-S---FTAV---------LTACCHVGLVELGQRLFNMMQEKYKIMPR--T---EHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 450 ~~-~---~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
.. . |..+ +......++|.++.+..+...+. .|. . ..+..+-.++...|++.+|++...+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 22 1 1111 11223455666666666666543 333 1 2233455667777788888888777
Q ss_pred cC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 512 MS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 512 ~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
+. ..|| +.++-.-..+|.-...++.|++-|+++.+.+|+|..+..
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 76 3443 666666667777777788888888888888877765543
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.4e-08 Score=94.94 Aligned_cols=198 Identities=17% Similarity=0.093 Sum_probs=143.0
Q ss_pred CchHHHHHHHHHHHHhC-CCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMG-VEG--DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIE 437 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 437 (566)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666532 122 245677888899999999999999998875 457789999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 517 (566)
.|++..+..+.+..++..+..++...|++++|.+.+++..+. .|+..........+...+++++|...+++....-+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999999877778889999999999999999999999999865 44433222222334567889999999976542212
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hhCCCCchHHHHHHHHHhhcC
Q 036165 518 LFVWGALLGACKNHGNIELAEIAAKHLS-------ELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g 566 (566)
...|. ........|+..++ ..++.+. ++.|+.+..|..||.+|.++|
T Consensus 197 ~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g 250 (296)
T PRK11189 197 KEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG 250 (296)
T ss_pred ccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 22232 12223345554333 2333333 566778889999999999876
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=8e-07 Score=88.10 Aligned_cols=223 Identities=8% Similarity=0.009 Sum_probs=141.5
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC-----------CCc-chHHHHHHHH
Q 036165 87 IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK-----------TNI-HRWIALTGAY 154 (566)
Q Consensus 87 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~ 154 (566)
.|..-|+.+.|-+-...+. +..+|..+.++|.+..+++-|.-.+..|.. .|. ..=....-..
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 3445566666666555442 345778888888888888877777776654 011 1111222234
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 234 (566)
..-|..++|..+|++.++. ..+=..|...|.+++|.++-+.=-+..+ ..+|-.....+-..+|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5667788888888887663 3333445567888888777654322211 223444555556667788888
Q ss_pred HHHHhcCC-----------------------CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHh
Q 036165 235 KVFDEMVE-----------------------KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291 (566)
Q Consensus 235 ~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 291 (566)
+.|++... +|...|.-....+-..|+.+.|+.+|...++ |-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 88876622 1444455555555667777888877776653 455667777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036165 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342 (566)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 342 (566)
-.|+.++|-++-++- -|....-.+.+-|-..|++.+|..+|-+..
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 778888887776653 255566677888888899989888887764
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.5e-05 Score=81.10 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
....|..+..+-.+.|...+|++-|-+. .|+..|..+++.+.+.|.|++..+++..+.++ .-+|..+ ..|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 3456888999988999999888776543 47788999999999999999999999988877 6666554 57889
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+|++.++..+-.+++. -|+......+..-|...|.++.|.-+|..+
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 9999999988777663 567777777777777777777776666543
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=1.5e-07 Score=82.15 Aligned_cols=286 Identities=10% Similarity=0.028 Sum_probs=159.0
Q ss_pred HHHHHhhcCChHHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHH-HHHHHcccCC
Q 036165 119 LITFYTECQNIHHARMLFDEIPKT---NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS-VLKACGHLSD 194 (566)
Q Consensus 119 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~ 194 (566)
.+..+.+..++++|++++..-.++ +....+.+..+|-...++..|.+.++++... .|...-|.. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 344444555666666665544432 3344566666777777777777777776653 333333321 1223345566
Q ss_pred hhHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcC-CCChhhHHHHHHHHHHcCChhHHHHHHHHh
Q 036165 195 IGTGEKIHSLVLKHSFGTDAF--VVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATEALNLVEEI 271 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 271 (566)
+..|.++...|... ++.. +...-.......+|+..+..++++.. +.+..+.+...-...+.|+++.|.+-|+..
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 66676666665432 1111 11111222345577777777777776 355555555555666777777777777776
Q ss_pred hhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-------------C---------------hhhHHHHHH
Q 036165 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-------------D---------------VVSWTSVIS 323 (566)
Q Consensus 272 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~li~ 323 (566)
.+-+---....|+..+ +..+.|+.+.|++...+++++|+.. | +..+|.-..
T Consensus 171 lqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred HhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 6533222344565444 3445677777777777777766443 1 122344444
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 402 (566)
.+.+.|+++.|.+-+-.|--. .-..|+.|+..+.-.= ..+++-....-+..+....+ ....+|..++-.||+..-++
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHh
Confidence 456677777777777666311 1234556655443221 22334444444444444433 34567777777888887777
Q ss_pred HHHHHHHhcC
Q 036165 403 EARTLFDKMS 412 (566)
Q Consensus 403 ~A~~~~~~~~ 412 (566)
.|-.++.+-.
T Consensus 328 lAADvLAEn~ 337 (459)
T KOG4340|consen 328 LAADVLAENA 337 (459)
T ss_pred HHHHHHhhCc
Confidence 7777776544
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.7e-07 Score=84.43 Aligned_cols=398 Identities=14% Similarity=0.064 Sum_probs=219.2
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCC
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFVVSSLIDMYSKCGS 229 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~ 229 (566)
..+....|+++.|+.+|.+...... +|...|+.=..++++.|++++|.+=-.+-++. .|+ ..-|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3556778999999999999988753 48888888888999999999888776666664 454 4568888888888999
Q ss_pred HHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChhHHH---HHHHHhhhC---CCCccHHHHHHHHHHHhcCC------
Q 036165 230 VEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEAL---NLVEEIGTP---RVKPNVVTWNTLISGFSKSG------ 294 (566)
Q Consensus 230 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~---~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~------ 294 (566)
+++|+..|.+-.+. |...++.+..++.......+.. .++..+... ........|..++..+-+.-
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988554 4456677776662111111111 111111110 00011122333433332210
Q ss_pred -CHHHHHHHHHHHHH--------cCC-------CC----------------------ChhhHHHHHHHHHhcCChhHHHH
Q 036165 295 -DQVMVSKLFQLMRA--------KGV-------EP----------------------DVVSWTSVISGLVHNFCNDEAFD 336 (566)
Q Consensus 295 -~~~~a~~~~~~~~~--------~~~-------~~----------------------~~~~~~~li~~~~~~g~~~~A~~ 336 (566)
+.+...+..-.+.. .|. .| -..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111111111110 011 01 01112333444444455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHH-------HHHHHHHHhcCCHHHHHHHHH
Q 036165 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR-------SALVDMYAKCGFISEARTLFD 409 (566)
Q Consensus 337 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~ 409 (566)
-+....+.. -+..-++....++...|.+......-...++.|-.. ..-+ ..+..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 555554432 222233344444455554444444433333333221 1111 112224444455555555555
Q ss_pred hcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 410 KMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 410 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
+... .+.... .+....+++.+..+...- ..|.. .-.-.-...+.+.|++..|+..+.+++.. .+-|.
T Consensus 323 kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~-~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da 392 (539)
T KOG0548|consen 323 KALTEHRTPDLL-------SKLKEAEKALKEAERKAY-INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDA 392 (539)
T ss_pred HHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchh
Confidence 4332 111111 111111222222111111 12221 11222356778899999999999999875 35677
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..|....-+|.+.|.+..|++-.+... ..| ....|.-=..++....++++|.+.|++.++.+|++..+...+...+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 889999999999999999988877766 233 344455445566667789999999999999999998888877776653
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.1e-05 Score=77.50 Aligned_cols=417 Identities=11% Similarity=0.028 Sum_probs=230.3
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHHh--hcCChHHHHHHhccCCCCCcchHHH
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK--LITFYT--ECQNIHHARMLFDEIPKTNIHRWIA 149 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~ 149 (566)
.|-+..++..-+-+.+..+.+++|..+.+.-.. ..+.+. +=.+|+ +.+..++|.+.++.....+..+...
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L 115 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLEL 115 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHH
Confidence 455566777777777788888888854433211 111122 345565 5689999999999666666656667
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCC-cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHh
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQN-IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT--DAFVVSSLIDMYSK 226 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~ 226 (566)
-...+-+.|++++|+++|+.+.+.+.+-. ...-..++.+-. .-.+. + +......| +...+-.....+..
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~---~q~v~~v~e~syel~yN~Ac~~i~ 187 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-L---LQSVPEVPEDSYELLYNTACILIE 187 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-H---HHhccCCCcchHHHHHHHHHHHHh
Confidence 77888999999999999999987653311 111112222111 11111 1 22222222 22222234556778
Q ss_pred cCCHHHHHHHHHhc--------CCCCh----------hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHH----HH
Q 036165 227 CGSVEKAKKVFDEM--------VEKDI----------VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT----WN 284 (566)
Q Consensus 227 ~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~ 284 (566)
.|++.+|+++++.. .+.|. ..--.+..++...|+..+|..++....... .+|... -|
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~N 266 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVN 266 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhc
Confidence 89999999999887 22111 112335556778899999999999988765 344422 23
Q ss_pred HHHHHHhcCCCH-H-HHHHHHHHHHHcCC----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036165 285 TLISGFSKSGDQ-V-MVSKLFQLMRAKGV----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352 (566)
Q Consensus 285 ~ll~~~~~~~~~-~-~a~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 352 (566)
.++. .....++ + .++..++....... .-.....|..+-.+ ..+..+.+.++....- +..|. ..
T Consensus 267 NLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l-~tnk~~q~r~~~a~lp--~~~p~-~~ 341 (652)
T KOG2376|consen 267 NLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL-FTNKMDQVRELSASLP--GMSPE-SL 341 (652)
T ss_pred chhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHhCC--ccCch-HH
Confidence 2322 2221111 1 11112221111000 00111111111111 1222233333322221 12222 33
Q ss_pred HHHHHHHHHc-c-CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH--------hcCC--CChhHHH
Q 036165 353 ISSILPACAS-A-ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD--------KMSE--RNTVTWN 420 (566)
Q Consensus 353 ~~~ll~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~ 420 (566)
+..++..+.+ . ....++.+++...-+....-...+.-..+......|+++.|.+++. .+.+ ..+.+..
T Consensus 342 ~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~ 421 (652)
T KOG2376|consen 342 FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG 421 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH
Confidence 3344433322 2 2356666666666655444445566677778888899999988888 3332 2334555
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhc---CCCCHHHHHH----HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTA----VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
.+...+.+.++.+.|..++.+.... ..+....... +...-.+.|+-++|..+++++.+. .++|..+...++
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV 499 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLV 499 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 5666677777766677777666554 1222233333 333334568888888888888863 467778888888
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+|++. +.+.|..+-+.+.
T Consensus 500 ~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 500 TAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHhc-CHHHHHHHhhcCC
Confidence 888775 6777777766654
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=4.7e-06 Score=81.07 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=99.8
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---Ch--hHHHHHHHHHH
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R---NT--VTWNSMIFGCA 427 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~l~~~~~ 427 (566)
.+...+...|++++|...++...+..+. +...+..+...|...|++++|...+++..+ | +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 4444555666666666666666655432 345556666667777777777777666553 1 11 13445566667
Q ss_pred hcCChHHHHHHHHHhhhcCC--CCHHHH-H--HHHHHHhccCChHHHHHHHHHhHHhc--CCC--CChhHHHHHHHHHHh
Q 036165 428 NHGYCDEAIELFNQMEERKK--LDHLSF-T--AVLTACCHVGLVELGQRLFNMMQEKY--KIM--PRTEHYACMVDLLGR 498 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~--~~~~~~-~--~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--p~~~~~~~l~~~~~~ 498 (566)
..|++++|..++++.....+ +..... + .++.-+...|..+.+.+. +.+.... ..+ .........+.++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 77777777777777643311 111111 1 222233333433322222 1111110 111 111222245666777
Q ss_pred cCCHHHHHHHHHhcCC--CC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 499 AGRLAEAYEMIKTMST--EP---D------LFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 499 ~g~~~~A~~~~~~~~~--~p---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
.|+.++|...++.+.. +. . ........-++...|+.++|.+.+..++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888776651 11 1 111222224466888888898888888764
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.3e-06 Score=74.97 Aligned_cols=310 Identities=10% Similarity=0.039 Sum_probs=197.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHH-HHHHHHH
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS-SLIDMYS 225 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~ 225 (566)
+++.+..+++..+++.|++++..-.+...+ +....+.+..+|....++..|...++++-.. .|...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 567788888999999999999888776322 5556677777788889999999999998764 34444333 2345667
Q ss_pred hcCCHHHHHHHHHhcCCCC-hhhHHHHHH--HHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHH
Q 036165 226 KCGSVEKAKKVFDEMVEKD-IVAMNAMVS--GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302 (566)
Q Consensus 226 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 302 (566)
+.+.+.+|+.+...|.+.+ ...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 7899999999999997742 222112222 3345788999999999876533 444555555566789999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCchHHHHHHHHHHHH
Q 036165 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI----SSILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
|....+-+--.....||.-+ +..+.|+++.|++...+.++.|++..+..- +..+. ....|+.. .+. .
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt~---~lh----~ 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNTL---VLH----Q 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccchH---HHH----H
Confidence 99987754333456676544 566789999999999999988754322110 00000 00001100 000 0
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH
Q 036165 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF 453 (566)
Q Consensus 379 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 453 (566)
. .-+..+|.-.-.+.+.|+.+.|.+.+..|.. -|++|...+.-.- ..+++.+..+-+.-+....|-...||
T Consensus 238 S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 238 S---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred H---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHH
Confidence 0 1123455555666777888888887777763 3555554432221 23444444444444554445566777
Q ss_pred HHHHHHHhccCChHHHHHHHHH
Q 036165 454 TAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
..++-.||+..-++.|..++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhh
Confidence 7777777777777777766654
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=0.00013 Score=80.65 Aligned_cols=328 Identities=10% Similarity=-0.043 Sum_probs=192.7
Q ss_pred HHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCChhHHHHHHHHhhhC--CC----Ccc--HHHHHHHHHHH
Q 036165 223 MYSKCGSVEKAKKVFDEMVE----KDIVAMNAMVSGYVQRGLATEALNLVEEIGTP--RV----KPN--VVTWNTLISGF 290 (566)
Q Consensus 223 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----~p~--~~~~~~ll~~~ 290 (566)
.....|+++.+...++.+.. .+..........+...|+++++...+...... .. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34445666666666666521 12223334444556778888888888776542 11 111 11222233445
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHH
Q 036165 291 SKSGDQVMVSKLFQLMRAKGVEPD----VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF---CP--TSATISSILPACA 361 (566)
Q Consensus 291 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~ll~~~~ 361 (566)
...|+++.|...++...+.-...+ ....+.+...+...|++++|...+++.....- .+ ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 578888888888888765311111 12345555667778888888888888764211 11 1233445566777
Q ss_pred ccCchHHHHHHHHHHHHh----CCC--C-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhHHHHHHHHH
Q 036165 362 SAANMRRGKEIHGCAIVM----GVE--G-DLHVRSALVDMYAKCGFISEARTLFDKMSE------R--NTVTWNSMIFGC 426 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~ 426 (566)
..|+++.|...+...... +.. + ....+..+...+...|++++|...+++... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 888888888887776552 211 1 122344556667777888888888776543 1 122344455566
Q ss_pred HhcCChHHHHHHHHHhhhc-CC-CCHHHHHH-----HHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHH
Q 036165 427 ANHGYCDEAIELFNQMEER-KK-LDHLSFTA-----VLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVDLL 496 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~ 496 (566)
...|+.++|.+.+++.... .. .....+.. .+..+...|+.+.|...+...... ..... ...+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 7788888888888887654 11 11111111 113334577888888887665432 11111 11134566778
Q ss_pred HhcCCHHHHHHHHHhcCC-------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 497 GRAGRLAEAYEMIKTMST-------EP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
...|++++|...+++... .. ...+...+..++.+.|+.++|...+.++++.....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 888888888888877651 11 12345566677888889999999999988887544
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=3.7e-06 Score=85.38 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=52.6
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc-----CC---CChhHHHHHHHHHH
Q 036165 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-----SE---RNTVTWNSMIFGCA 427 (566)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l~~~~~ 427 (566)
+...+....+++.|...+.......+. +...+--........|+.-++..+|..- .+ ++..-|-+...-..
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 333344555666666666665544322 2333322222333445555555555431 11 23223333333333
Q ss_pred hcCChHHHHHHHHH----------hhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 036165 428 NHGYCDEAIELFNQ----------MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476 (566)
Q Consensus 428 ~~~~~~~A~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 476 (566)
.+|+.++-+...++ .....+.+...|...+...-+.+.+..|.+...+.
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444433322222 22222334445655555555556555555555444
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=2.1e-05 Score=77.48 Aligned_cols=345 Identities=14% Similarity=0.100 Sum_probs=187.4
Q ss_pred HHHHHHhhcCChHHHHHHhccCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChh
Q 036165 118 KLITFYTECQNIHHARMLFDEIPKTNIH-RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196 (566)
Q Consensus 118 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 196 (566)
.-|.+|....+|++|..+-+-.-.|-.. .-.+.++++...|+-++|-++-+. +.. -.+.|+.|.+.|.+.
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dgd-~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DGD-GLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cCc-cHHHHHHHHHcCCch
Confidence 4577788888888888776654444221 223445555556666555543111 111 123455566666655
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---------------------------hHH
Q 036165 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV---------------------------AMN 249 (566)
Q Consensus 197 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~ 249 (566)
.|.+....-. .+..|..+...+..++.+..-+++|-.+|+++..++.. .-.
T Consensus 633 ~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee 710 (1636)
T KOG3616|consen 633 KAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEE 710 (1636)
T ss_pred HHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHH
Confidence 5443321110 12233444444444444444445555555544332211 011
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036165 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329 (566)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 329 (566)
.....+...|+++.|+.-|-+.. .....+.+.....++.+|..+++.+.... .-..-|..+..-|...|
T Consensus 711 ~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~ 779 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKG 779 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccch
Confidence 12222333344444443332221 11223444555666777777777666542 22334555666677777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409 (566)
Q Consensus 330 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 409 (566)
+++.|.++|-+. + .+.-.+..|.+.|+++.|.++-.+. .|+......|-+-..-+-+.|++.+|.+++-
T Consensus 780 dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 780 DFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred hHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 777777776543 1 2334455667777777766654443 2344455556566666667777777777777
Q ss_pred hcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHH
Q 036165 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489 (566)
Q Consensus 410 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 489 (566)
.+..|+.. |..|-+.|..++.+++.++-.- ..-..|...+..-+...|++..|+.-|-+..+ |
T Consensus 849 ti~~p~~a-----iqmydk~~~~ddmirlv~k~h~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~ 911 (1636)
T KOG3616|consen 849 TIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHG--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------F 911 (1636)
T ss_pred EccCchHH-----HHHHHhhCcchHHHHHHHHhCh--hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------H
Confidence 66666643 5667777777777666554321 11223566666777778888888877755532 5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 036165 490 ACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.+-+++|...+.|++|.++-+.-
T Consensus 912 kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhcc
Confidence 66677788888888888776643
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=9.2e-06 Score=79.86 Aligned_cols=360 Identities=18% Similarity=0.145 Sum_probs=206.6
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHH
Q 036165 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206 (566)
Q Consensus 127 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 206 (566)
.++.+|..+|-+-. .-...|..|..-.+|++|+.+-+- .|.+.-...-.+.++++...|+-+.|-++-
T Consensus 545 kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---- 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---- 612 (1636)
T ss_pred hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----
Confidence 35666666653211 112345555555666766665432 232222222234455555666655554431
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHH
Q 036165 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284 (566)
Q Consensus 207 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 284 (566)
..+... -+.|..|.+.|.+.+|......- ...|......+..++.+..-+++|-++|+++.. |+
T Consensus 613 ----~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~d----- 678 (1636)
T KOG3616|consen 613 ----ESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD----- 678 (1636)
T ss_pred ----cccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----
Confidence 112222 34678899999988877654322 234555555566666666666666666665542 11
Q ss_pred HHHHHHhcCCCHHHHHHHHHHH----------------HHcCC-CC------ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 285 TLISGFSKSGDQVMVSKLFQLM----------------RAKGV-EP------DVVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~----------------~~~~~-~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
..+..+-+..-+.+|.++-+-. ...|. .. .....-..+.+....+.+.+|+.+++.+
T Consensus 679 kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildni 758 (1636)
T KOG3616|consen 679 KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNI 758 (1636)
T ss_pred HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHh
Confidence 1111111111122222221111 00000 00 0011122344556678888899998888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHH
Q 036165 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN--TVTW 419 (566)
Q Consensus 342 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 419 (566)
..+. .-..-|..+...|++.|+++.|+++|-+. ..++..+.+|.+.|+|+.|.++-.+...|. +..|
T Consensus 759 qdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y 827 (1636)
T KOG3616|consen 759 QDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY 827 (1636)
T ss_pred hhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence 7653 22334667788899999999999888653 245678899999999999999988888764 3456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
-+-..-.-.+|++.+|.++|-.+. .|+. .|..|-+.|..+..+++.++--. ..-..|-..+..-|...
T Consensus 828 iakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAE 895 (1636)
T ss_pred HHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhc
Confidence 555666778899999988775442 3443 35667788888888777654321 11234566777888888
Q ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036165 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 500 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (566)
|++.+|..-|-+.. -|.+-.+.|..++-+++|.++.
T Consensus 896 g~lkaae~~flea~------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred cChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHH
Confidence 99998888877664 3444444555555555544433
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=8.4e-06 Score=81.16 Aligned_cols=444 Identities=12% Similarity=0.106 Sum_probs=216.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHH
Q 036165 78 PAAYSERIEIYIRDRALQSGKILHAQLIVSG--------LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149 (566)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 149 (566)
...|..+.+.|.+.++++-|+..+..|.... ...+...-....-.-...|.+++|..++.+-.+ |..
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DL 831 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDL 831 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHH
Confidence 3568899999999999888887777665331 111112222222333455777777777765543 334
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHH----------HHcC---------C
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV----------LKHS---------F 210 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~g---------~ 210 (566)
|=..|-.+|.+++|.++-+.=.+.-. ..||..-...+-..++.+.|.+.|++. ++.. -
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 44555566777777766544322111 123333333344445555555555442 1111 0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhhHHHHHHHHHHcCChhHHHH
Q 036165 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE------------------------KDIVAMNAMVSGYVQRGLATEALN 266 (566)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~~a~~ 266 (566)
..|...|.--....-..|+.+.|+.+|....+ .|......+.+.|-..|++.+|..
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 12334444455555567777777777776521 144455566666777777777777
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036165 267 LVEEIGTPRVKPNVVTWNTLISGFSKSG---------------DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331 (566)
Q Consensus 267 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 331 (566)
.|.+... |...|+.|-..+ +.-.|.+.|++.- . -+...+..|-+.|.+
T Consensus 989 FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 989 FFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcch
Confidence 6665532 222332222211 1222222332211 0 011122346667777
Q ss_pred hHHHHHHHH--------HHHCCC--CCCHHHHHHHHHHHHccCchHHHHHHHHHHHH----------hCC----------
Q 036165 332 DEAFDTFKE--------MLSQGF--CPTSATISSILPACASAANMRRGKEIHGCAIV----------MGV---------- 381 (566)
Q Consensus 332 ~~A~~~~~~--------m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~~---------- 381 (566)
.+|+++--+ ++...+ ..|+..++....-++...++++|..++-...+ .++
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhc
Confidence 766654211 122222 23455566666666666777766655433221 111
Q ss_pred ------CCc----HhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------------------------ChhHHHHHHHHHH
Q 036165 382 ------EGD----LHVRSALVDMYAKCGFISEARTLFDKMSER------------------------NTVTWNSMIFGCA 427 (566)
Q Consensus 382 ------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~~l~~~~~ 427 (566)
.|+ ..+...+.+.+.++|.+..|-+-|...-++ ... ..+|..-|.
T Consensus 1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkE-iYImAANyL 1210 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKE-IYIMAANYL 1210 (1416)
T ss_pred CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccce-eeeehhhhh
Confidence 111 234455666777777777776666543220 000 011222223
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh---c------------cCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC---H------------VGLVELGQRLFNMMQEKYKIMPRTEHYACM 492 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 492 (566)
+.=+|..--++++.+.... .-...+..|.+.|. . .|-.++|-+.+.++..+ . .....++.|
T Consensus 1211 QtlDWq~~pq~mK~I~tFY-TKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k-~--~~~t~l~~L 1286 (1416)
T KOG3617|consen 1211 QTLDWQDNPQTMKDIETFY-TKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQK-N--MSTTGLDAL 1286 (1416)
T ss_pred hhcccccChHHHhhhHhhh-hcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhh-c--chHHHHHHH
Confidence 3222322222222222210 01112222322221 1 23334444555555443 2 122223333
Q ss_pred HHHHHhc-----------CCHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 493 VDLLGRA-----------GRLAEAYEMIKTMSTEPD-------LFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 493 ~~~~~~~-----------g~~~~A~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
-.-.... .+..+...-.+.+..+|+ ...|..|+..+....++..|-+.++.+....|+-
T Consensus 1287 q~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1287 QEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNV 1363 (1416)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCcc
Confidence 2222211 133333444445554443 3467888899999999999999999999887753
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=3.3e-07 Score=79.76 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=124.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQ 470 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 470 (566)
-+..|.+.|+++.+....+.+..+.. .+...++.+++...+++..+..+.|...|..+...+...|++++|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45567888888877655544333210 1223566788888888888888889999999999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 471 RLFNMMQEKYKIMPRTEHYACMVDLL-GRAGR--LAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
..+++.... .+.+...+..+..++ .+.|+ .++|.+++++.. ..| +..++..+...+.+.|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999865 234677888888864 67777 599999999988 334 67888888899999999999999999999
Q ss_pred hhCCCCchHHHHHHHH
Q 036165 546 ELEPESAANNMLLTDL 561 (566)
Q Consensus 546 ~~~p~~~~~~~~l~~~ 561 (566)
+..|.+..-+..+..|
T Consensus 172 ~l~~~~~~r~~~i~~i 187 (198)
T PRK10370 172 DLNSPRVNRTQLVESI 187 (198)
T ss_pred hhCCCCccHHHHHHHH
Confidence 9888777666555443
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=2.9e-05 Score=85.75 Aligned_cols=359 Identities=10% Similarity=-0.025 Sum_probs=212.9
Q ss_pred HHHhhcCChHHHHHHhccCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHH
Q 036165 121 TFYTECQNIHHARMLFDEIPKTNIH--RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198 (566)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 198 (566)
..+...|++.+|............. ........+...|++..+...++.+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 3344445555554444433332111 11122234455677777777766653221111222223334445567888998
Q ss_pred HHHHHHHHHcCC------CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh----hhHHHHHHHHHHcCChh
Q 036165 199 EKIHSLVLKHSF------GTD--AFVVSSLIDMYSKCGSVEKAKKVFDEMVE----KDI----VAMNAMVSGYVQRGLAT 262 (566)
Q Consensus 199 ~~~~~~~~~~g~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~ 262 (566)
...++.....-- .+. ......+...+...|++++|...+++... .+. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 888887754311 111 12223344556678999999988887632 121 23455666777889999
Q ss_pred HHHHHHHHhhhC----CC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCC
Q 036165 263 EALNLVEEIGTP----RV-KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK----GVE--P-DVVSWTSVISGLVHNFC 330 (566)
Q Consensus 263 ~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~ 330 (566)
+|...+.+.... |- .....++..+...+...|+++.|...+++.... +.. + ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 999888887532 11 111234555667778899999999988876542 211 1 12234455566777899
Q ss_pred hhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC--cHh----HHHHHHHHHHhcCC
Q 036165 331 NDEAFDTFKEMLSQG--FCPT--SATISSILPACASAANMRRGKEIHGCAIVMGVEG--DLH----VRSALVDMYAKCGF 400 (566)
Q Consensus 331 ~~~A~~~~~~m~~~~--~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~----~~~~l~~~~~~~g~ 400 (566)
+++|...+++..... ..+. ...+..+.......|+.+.|...+.......... ... .....+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 999998888875431 1121 2334445567778899999988888775531111 110 01112244556788
Q ss_pred HHHHHHHHHhcCCCC---h----hHHHHHHHHHHhcCChHHHHHHHHHhhhc---C-CC--CHHHHHHHHHHHhccCChH
Q 036165 401 ISEARTLFDKMSERN---T----VTWNSMIFGCANHGYCDEAIELFNQMEER---K-KL--DHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 401 ~~~A~~~~~~~~~~~---~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~-~~--~~~~~~~l~~~~~~~g~~~ 467 (566)
.+.|...+.....+. . ..+..+..++...|++++|...+++.... . .+ ...+...+..++...|+.+
T Consensus 669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~ 748 (903)
T PRK04841 669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS 748 (903)
T ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence 999988887665421 1 11345566777889999999998887764 1 11 1235666777888999999
Q ss_pred HHHHHHHHhHHh
Q 036165 468 LGQRLFNMMQEK 479 (566)
Q Consensus 468 ~a~~~~~~~~~~ 479 (566)
+|...+.++.+.
T Consensus 749 ~A~~~L~~Al~l 760 (903)
T PRK04841 749 EAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHH
Confidence 999999888875
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=1.1e-05 Score=78.60 Aligned_cols=254 Identities=13% Similarity=0.031 Sum_probs=133.4
Q ss_pred HHHHcCChhHHHHHHHHhhhCCCCccHHHHHH---HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 036165 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNT---LISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSWTSVISGLVHNF 329 (566)
Q Consensus 254 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 329 (566)
.+...|++++|.+.+++..+.. +.+...+.. ........+..+.+.+.+.. ..+..|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 3445566666666666655432 222222221 11111123333444443333 1111222 223334445666677
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-Cc--HhHHHHHHHHHHhcCCHHHHHH
Q 036165 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GD--LHVRSALVDMYAKCGFISEART 406 (566)
Q Consensus 330 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~A~~ 406 (566)
++++|...+++..+.. +.+...+..+..++...|++++|...+....+.... ++ ...+..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777776653 333455566666677777777777777766654321 22 2234467778888888888888
Q ss_pred HHHhcCC--CChhHHH------HHHHHHHhcCChHHHHHHHHHhhhc---C-CC--CHHHHHHHHHHHhccCChHHHHHH
Q 036165 407 LFDKMSE--RNTVTWN------SMIFGCANHGYCDEAIELFNQMEER---K-KL--DHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 407 ~~~~~~~--~~~~~~~------~l~~~~~~~~~~~~A~~~~~~~~~~---~-~~--~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
++++... +....+. .++.-+...|....+.++ +.+... . +. ..........++...|+.++|..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8887653 2111111 112222333433322222 111111 1 11 112223566677889999999999
Q ss_pred HHHhHHhcCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 473 FNMMQEKYKIMP--------RTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 473 ~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
++.+... ...+ .....-....++.+.|++++|.+.+....
T Consensus 287 L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 287 LAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9988764 2110 11222233445678999999999988764
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2e-07 Score=85.90 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc-cHHHHHHHHHHHhcCCCH
Q 036165 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-NVVTWNTLISGFSKSGDQ 296 (566)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~ 296 (566)
..+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++....+..+ +..........+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3345555555555544433333333343344333333332233444444444433332222 222222222344555666
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
+.|+++++.. .+.......+.+|.+.++++.|.+.++.|.+
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666555431 2344455555666666666666666666654
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=2.4e-05 Score=79.73 Aligned_cols=461 Identities=13% Similarity=0.042 Sum_probs=271.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCCh
Q 036165 84 RIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYH 160 (566)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 160 (566)
.+..|.+.+ ...+...+-+.++.... -...|..|-..|....+...|.+.|+..-+ .+..++......|++..++
T Consensus 465 ~a~~~~rK~-~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 465 VALGCMRKN-SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHhhhh-HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 344444433 33444444444443321 224688888999888888899999987765 4677899999999999999
Q ss_pred HHHHHHHHHhHHCC-CCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 161 QEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 161 ~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (566)
+.|..+.-..-+.. ...-...|....-.+...++...+..-++...+.. +.|...|..+..+|.++|++..|.++|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 99998843332221 00011123334444667788889999998888764 55778899999999999999999999988
Q ss_pred cCCCChhh-HH--HHHHHHHHcCChhHHHHHHHHhhhC------CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Q 036165 240 MVEKDIVA-MN--AMVSGYVQRGLATEALNLVEEIGTP------RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA-- 308 (566)
Q Consensus 240 ~~~~~~~~-~~--~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 308 (566)
...-++.. |. -.....+..|++.+|+..+...... +..--..++..+...+.-.|=..++..+++..++
T Consensus 622 As~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 622 ASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred hHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 85443332 22 2233456789999999988876532 1111223333333333334444444444443332
Q ss_pred -----cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch---H---HHHHHHHHHH
Q 036165 309 -----KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM---R---RGKEIHGCAI 377 (566)
Q Consensus 309 -----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~ 377 (566)
.....+...|-.+ ..|...|-+.. .. .|+......+..-.-..+.. | .+.+.+-.-.
T Consensus 702 ~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred HHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 2112222222222 22333333332 11 23333222222212222222 1 1111111111
Q ss_pred HhCCCCcHhHHHHHHHHHHh----c----CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 036165 378 VMGVEGDLHVRSALVDMYAK----C----GFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446 (566)
Q Consensus 378 ~~~~~~~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 446 (566)
+. ..++..+..++..|.+ + .+...|+..+.+..+ .+...|+.|.-. ...|++.-|..-|-+-....
T Consensus 770 sl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 770 SL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred HH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 11 1123333333333332 1 223467777776554 677788877655 66677877777777766667
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCH
Q 036165 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-------TEPDL 518 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~ 518 (566)
+.+..+|..+.-.+.+..+++.|...|...+. +.| +...|-.........|+.-++..+|..-- .-|+.
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 77888999999999999999999999999885 344 45556555555667788888888876521 22555
Q ss_pred HHHHHHHHHHHhcCCHHHHHH----------HHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 519 FVWGALLGACKNHGNIELAEI----------AAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.-|......-...|+.++-+. .+++.++..|+...+|...+.....+
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL 980 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHL 980 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHH
Confidence 556555555556666555443 44555667898888888877766543
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=1e-07 Score=78.42 Aligned_cols=123 Identities=11% Similarity=-0.103 Sum_probs=101.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 036165 437 ELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--T 514 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 514 (566)
.++++..+. ++..+..+..++...|++++|...|+.+... -+.+...|..+..++.+.|++++|...|+++. .
T Consensus 14 ~~~~~al~~---~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV---DPETVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555443 3333556778889999999999999999864 34467888999999999999999999999987 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
+.+...+..+..++...|+.++|+..++++++..|+++..+...+++...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999998887643
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-05 Score=75.86 Aligned_cols=400 Identities=11% Similarity=0.028 Sum_probs=200.0
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHH
Q 036165 88 YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN---IHRWIALTGAYARRGYHQEAV 164 (566)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 164 (566)
....|+++.|...|...+....+ |-..|+.-...|+..|++++|.+=-.+-.+-+ ...|+-...++.--|++++|+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 33567888888888888777644 66777777778888888887776555444422 235777777777788888888
Q ss_pred HHHHHhHHCCCCC-CcchHHHHHHHHccc---CChhHHHHHHHHHHHcC---CCCchhHHHHHHHHH----------Hhc
Q 036165 165 TVFHEMHIQGLKQ-NIFVIPSVLKACGHL---SDIGTGEKIHSLVLKHS---FGTDAFVVSSLIDMY----------SKC 227 (566)
Q Consensus 165 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~----------~~~ 227 (566)
..|.+-.+. .| +...++.+..+.... ++.-..-.++..+.... .......|..++..+ ...
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 888777664 33 333444454444100 00000000111110000 000000111111111 000
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcC--------Chh----HHHHHHHHhhh-CCCCccHHHHHHHHHHHhcCC
Q 036165 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG--------LAT----EALNLVEEIGT-PRVKPNVVTWNTLISGFSKSG 294 (566)
Q Consensus 228 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~----~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~ 294 (566)
.++..+.-.+...... .+...| ... .......++.+ ...+--..-...+.++..+..
T Consensus 169 ~r~m~a~~~l~~~~~~----------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDEL----------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred HHHHHHHHHHhcCccc----------cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 0011111111110000 000000 000 00000000000 000001122455666666777
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CH----HHHHHHHHHHHccCchHH
Q 036165 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP--TS----ATISSILPACASAANMRR 368 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~----~~~~~ll~~~~~~~~~~~ 368 (566)
+++.+.+-+....+.. .+..-++....+|...|.+.+.........+.|... +. ..+..+..++.+.++++.
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 7777777777666653 455555666666777777666666665555544211 11 112223335555667777
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS--ERNT-VTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
+...+.+.+.....|+. ..+....+++........ .|.. .....-...+.+.|++..|+..|.+++..
T Consensus 317 ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 77777776554333222 122233444444333222 2222 11122255566777777777777777777
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|.|...|..-.-+|.+.|.+..|+.-.+...+. -++....|..=..++.-..++++|.+.|++..
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777776666653 12233445555556666667777777777766
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=3.5e-05 Score=69.18 Aligned_cols=310 Identities=12% Similarity=0.046 Sum_probs=187.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHH---HHHcccCChhHHHHHHHHHHHcCCCCchhH-HH
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL---KACGHLSDIGTGEKIHSLVLKHSFGTDAFV-VS 218 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~ 218 (566)
++.-..-+...+...|++..|+.-|....+. |+..|..+. ..|...|+-..|..=+..+++. .||-.. ..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444566778888888899998888887653 334444443 3466778777787777777764 565432 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHH
Q 036165 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298 (566)
Q Consensus 219 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 298 (566)
.-...+.++|.++.|..-|+.+.+.++.- +....++.+.-..++-.. ....+..+...|+...
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQN 173 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhh
Confidence 33456778888888888888875543210 001111111111111111 2223344556778888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 036165 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 299 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
|.+....+++. .+-|...|..-..+|...|++..|+.-++..-+.. .-+..++..+-..+...|+.+.+.....+.++
T Consensus 174 ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 88888877765 23466667777788888888888887777665432 33445555666677777887777777777766
Q ss_pred hCCCCcHhH----HHHH---------HHHHHhcCCHHHHHHHHHhcCC--CCh--h---HHHHHHHHHHhcCChHHHHHH
Q 036165 379 MGVEGDLHV----RSAL---------VDMYAKCGFISEARTLFDKMSE--RNT--V---TWNSMIFGCANHGYCDEAIEL 438 (566)
Q Consensus 379 ~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~--~~~--~---~~~~l~~~~~~~~~~~~A~~~ 438 (566)
.++ +... |..+ +......++|.++.+..++..+ |.. . .+..+-.++...+++.+|++.
T Consensus 252 ldp--dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 LDP--DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred cCc--chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 543 2211 1111 1222345666666666665554 221 1 233344455566777777777
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
..++.+..+.|..++.--..+|.-..+|+.|+.-|+.+.+.
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777766666777777777777777777777777777653
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=3.4e-07 Score=89.82 Aligned_cols=218 Identities=15% Similarity=0.110 Sum_probs=176.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
|-...-..+...+.+.|-...|..+|++.. .+..++.+|...|+..+|..+..+..+ -+|++..|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 333344566778888999999999998863 466788889999999999999888877 457888999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
+.....--+++|.++++....+- -..+.......++++++.+.|+.-.+..+....+|..+.-+..+.++++.|.+.
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA---~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARA---QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHH---HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 98888888999999988765431 122222233478999999999988887777888999999999999999999999
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 473 FNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 473 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
|..... ..|| ...||.+-.+|.+.|+-.+|...+.++. ...+...|...+-...+.|.+++|++++.+++++
T Consensus 542 F~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999885 3454 6889999999999999999999999887 3356677888888888999999999999999864
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2e-07 Score=89.01 Aligned_cols=221 Identities=16% Similarity=0.095 Sum_probs=145.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036165 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 404 (566)
+.+.|+..+|.-.|+..+++. +-+...|..|.......++-..|+..+.++++..+. +......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 567788888888888887764 445667777777777777777888888887776544 667777777778877877778
Q ss_pred HHHHHhcCCCC-hhHHHHHH--H-------HHHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 405 RTLFDKMSERN-TVTWNSMI--F-------GCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 405 ~~~~~~~~~~~-~~~~~~l~--~-------~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.+.++.-..-. ...|...- . .+..........++|-++... ..+|+.....|.-.|--.|+++.|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77776654311 11111100 0 011111233444555555444 236777777777777777777777777
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 473 FNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 473 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
|+.+.. +.| |..+||.|.-.++...+.++|...|++++ .+|+ +.++..|.-+|...|.+++|...|=.++.+.+
T Consensus 453 f~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 777774 344 45677777777777777777777777776 4565 55667777777777777777777777776655
Q ss_pred C
Q 036165 550 E 550 (566)
Q Consensus 550 ~ 550 (566)
.
T Consensus 530 k 530 (579)
T KOG1125|consen 530 K 530 (579)
T ss_pred c
Confidence 4
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=8.9e-07 Score=80.42 Aligned_cols=60 Identities=22% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMS-TEP----DLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
.+...|.+.|++++|...+++.. ..| ....+..+..++.+.|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677889999999999999876 223 3568889999999999999999999988877764
No 110
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=3.7e-06 Score=78.64 Aligned_cols=198 Identities=11% Similarity=0.074 Sum_probs=114.2
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh--HHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG-FISEARTLFDKMSE---RNTVTWNSMIFGCANHGYC--DEAIE 437 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~ 437 (566)
+..++|.....++++..+. +..+++.-..++.+.| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 3444444444444443322 2334443444444444 45666666665553 3344555444444444442 55666
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCH----HHHHHHHH
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA---GRL----AEAYEMIK 510 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 510 (566)
+++++.+..+-|..+|+....++...|+++++++.++++++. . +-+...|+....++.+. |.. +++.+...
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 777777666667777777777777777777777777777764 2 23455566555554443 222 34555554
Q ss_pred hcC-CC-CCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 511 TMS-TE-PDLFVWGALLGACKNH----GNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 511 ~~~-~~-p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
++. .. -|...|+.+...+... ++..+|...+.++.+.+|+++.++..|+++|..
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 444 23 3566677666666652 344567777777777777777777777777764
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.00034 Score=66.97 Aligned_cols=180 Identities=16% Similarity=0.128 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHH
Q 036165 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG---FISEARTLFDKMSE----RNTVTWNSMIFGCANHGYCDEAIELF 439 (566)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~ 439 (566)
+++..+++.....-...+..+|..+.+.-...- ..+.....+++... .-..+|...+..-.+....+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 444555555444322223444443333221111 24444445554443 23356888888888888899999999
Q ss_pred HHhhhc-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 036165 440 NQMEER-KKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-- 515 (566)
Q Consensus 440 ~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 515 (566)
.+..+. ..+ +....++++.-+| .++.+.|.++|+.-..++|- ++.--...++.+...++-..|..+|++....
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999988 444 5556777777555 57889999999988876443 4445567888899999999999999998733
Q ss_pred -C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 516 -P--DLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 516 -p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
| ....|..++.--..-|+...+.++-++.....|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 2 357899999999999999999999999887766
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=6e-07 Score=85.86 Aligned_cols=215 Identities=12% Similarity=0.078 Sum_probs=161.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 036165 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368 (566)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 368 (566)
-+.+.|++.+|.-.|+..++.. +-+...|.-|......+++-..|+.-+++.++.. +-+...+..|...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4567888999988898887762 3367888888888888888889999998888753 3445667788888889998888
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHH-----------HHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCCh
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVD-----------MYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYC 432 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 432 (566)
|...+..-+...++- ..+.. .+..........++|-.+.. .|......|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~y-----~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-----VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCccc-----hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 988888877765431 11111 11111223444455544431 5677788888888889999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
++|.+.|+......|.|...||-|.-.++...+.++|+..|.++++ +.|+. .+...|.-.|...|.+++|.+.|-+
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999887777888999999999999999999999999984 57774 4566778888999999999888866
Q ss_pred cC
Q 036165 512 MS 513 (566)
Q Consensus 512 ~~ 513 (566)
++
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 54
No 113
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=5.1e-05 Score=71.08 Aligned_cols=225 Identities=10% Similarity=0.044 Sum_probs=128.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH--H
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTS-ATISSILPACASAA-NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI--S 402 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 402 (566)
..++.++|+.++.++++. .|+. ..+..-..++...| +++++...++.+.+..++ +..+++....++.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 345556666666666553 2333 23333333344444 456666666666655443 444455444444444442 4
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc---CCh----HHHHHH
Q 036165 403 EARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV---GLV----ELGQRL 472 (566)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~ 472 (566)
++..+++++.+ .|..+|+...-++...|+++++++.++++++..+.|...|+....++.+. |.. ++....
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55666655553 45667777777777777777777777777777666666776666555443 222 345556
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcC--------------
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRA----GRLAEAYEMIKTMS-TE-PDLFVWGALLGACKNHG-------------- 532 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g-------------- 532 (566)
..+++.. .+-+...|+.+..++... ++..+|.+++.+.. .. .+......|+..|....
T Consensus 206 ~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 5555543 234556677777766662 34456777776654 22 34555666666665422
Q ss_pred ----CHHHHHHHHHHHhhhCCCCchHHH
Q 036165 533 ----NIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 533 ----~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
..++|..+++.+-+.+|--..++.
T Consensus 284 ~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 284 EELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred cccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 346788888887666665444443
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.5e-05 Score=78.66 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=171.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 363 (566)
..+...+.+.|-...|..++++.. .|...|.+|...|+.++|..+..+..++ +||+.-|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456667778888888988888754 5677899999999999999999988873 78999999998888888
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 8888888888765432 223333334457899999999987665 345688888888889999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
......+.+...||.+-.+|.+.|+-.+|...+++..+. . .-+..+|...+....+.|.+++|.+.+.++.
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 988877777789999999999999999999999999876 4 3455678888888999999999999998876
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=6.7e-06 Score=86.45 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=125.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHH
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTS---ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 389 (566)
+...|-..|.-....++.++|.++.++.+.. +++-.. ..|.+++..-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3455656666666666666666666666543 111111 223334443344455555566666665542 1234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhccC
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVG 464 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 464 (566)
.|...|.+.+..++|.++++.|.+ .....|...+..+.++++-+.|..++++..+..+. ......-.+..-.+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666666666666666666666664 24455666666666666666666666666655332 1223333444445666
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C----CCHHHHHHHHHHHHhcCCHHHHHH
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-E----PDLFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~----p~~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
+.+.+..+|+..... .+-..+.|+.+++.=.+.|+.+.++.+|+++.. . .-...|...+..--.+|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 666666666666653 233445566666666666666666666666551 1 123345555555555666555555
Q ss_pred HHHHHhh
Q 036165 540 AAKHLSE 546 (566)
Q Consensus 540 ~~~~~~~ 546 (566)
+=.++.+
T Consensus 1693 VKarA~E 1699 (1710)
T KOG1070|consen 1693 VKARAKE 1699 (1710)
T ss_pred HHHHHHH
Confidence 5555444
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=1.6e-06 Score=71.00 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=95.2
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TE 515 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 515 (566)
.++++.+..+.+......+...+...|++++|...++.+... .+.+...+..+..+|.+.|++++|...+++.. .+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555544445566778888889999999999999998875 24467888889999999999999999999876 34
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.+...+..+...+...|++++|...++++++..|++.....
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 46788888889999999999999999999999999887443
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.8e-05 Score=68.65 Aligned_cols=157 Identities=14% Similarity=0.058 Sum_probs=94.9
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcC
Q 036165 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHG 430 (566)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 430 (566)
..+-..+...|+-+....+........ ..+......++....+.|++.+|...|++... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 444444445555555444444433221 12444555566666667777777777766654 45666777777777777
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 510 (566)
+.++|..-|.+..+..+-++..++.+.-.+.-.|+++.|..++...... -.-|..+-..+..+....|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777776665556666666666666677777777777666643 22255556666666667777777766665
Q ss_pred hcC
Q 036165 511 TMS 513 (566)
Q Consensus 511 ~~~ 513 (566)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 443
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=7e-05 Score=65.06 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=66.0
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----c
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCAN----H 429 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~ 429 (566)
.-...|...+++++|.+...... +......=+..+.+..+.+-|...+++|.+ .+..+.+.|..++.+ .
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccc
Confidence 33344555555555555544311 222222223344444555555555555554 233344444444432 2
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
+...+|.-+|++|.+..+|+..+.+....++...|++++|..+++....+ ..-++.+...++.+-.-.|+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCC
Confidence 33555555555555555555555555555555555555555555555543 122344444444443444443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=5.3e-06 Score=75.31 Aligned_cols=165 Identities=11% Similarity=-0.006 Sum_probs=108.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHH---HHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RN-T---VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL---SFT 454 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 454 (566)
....+..++..+.+.|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+..+.+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455666777778888888888888887664 32 1 35566777788888888888888888776443332 455
Q ss_pred HHHHHHhcc--------CChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH
Q 036165 455 AVLTACCHV--------GLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525 (566)
Q Consensus 455 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 525 (566)
.+..++... |++++|.+.++.+... .|+. ..+..+.... ...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 555566544 6777888888887764 3332 2222221110 011000 01123566
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCC---chHHHHHHHHHhhcC
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPES---AANNMLLTDLYANAG 566 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g 566 (566)
..+.+.|++++|...++++++..|++ +.++..++.+|...|
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 77899999999999999999987765 478899999998765
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=1.1e-05 Score=69.93 Aligned_cols=159 Identities=15% Similarity=0.070 Sum_probs=133.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
|..+ ..+...+...|+-+....+...... .+.......+....+.|++.+|...+++.....++|..+|+.+.-+|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaal 144 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAAL 144 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHH
Confidence 4444 5677778888888888888877553 45556667889999999999999999999998999999999999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-CCHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-E-PDLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
.+.|+.++|..-|.+..+.. .-++..++.+.-.|.-.|+++.|..++..... . .|..+-..+.......|++++|+
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999998752 33456688898889999999999999998773 3 37888899999999999999999
Q ss_pred HHHHHHh
Q 036165 539 IAAKHLS 545 (566)
Q Consensus 539 ~~~~~~~ 545 (566)
.+..+-+
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 9887633
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.6e-07 Score=54.87 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=28.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|+.||..+|+.||++|++.|+.++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788888888888888888888888888888874
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=2.3e-05 Score=80.98 Aligned_cols=131 Identities=10% Similarity=0.027 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
+..+..|.....+.|..++|+.+++...+..|.+......++.++.+.+++++|...+++.... -+-+......+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHH
Confidence 4445555555555566666666666655555555555555555666666666666666555542 12233444455555
Q ss_pred HHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+.+.|++++|..+|+++. ..|+ ..++..+..++...|+.++|...|+++++..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 556666666666666555 2222 4555555555556666666666666665543
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=4.1e-05 Score=80.84 Aligned_cols=212 Identities=13% Similarity=0.138 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh-CCCC---cHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM-GVEG---DLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
+.|.++-+..+.. +.++..|...+......++.+.|+++.++++.. ++.- -..+|.++++.-..-|.-+...++
T Consensus 1442 esaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred cCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 3444444444332 445566778888888899999999998888763 1211 134677788887778888888899
Q ss_pred HHhcCC-CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 036165 408 FDKMSE-RN-TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 408 ~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 485 (566)
|++..+ .| ...|..|...|.+.+..++|.++++.|.+........|..++..+.+..+-+.|..+++++.+. -|.
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPK 1596 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cch
Confidence 988876 33 3467888888999999999999999999886667778999999999999889999999988864 333
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 486 ---TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 486 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
.....-.+..-.+.|+.+.+..+|+... .+.-...|+.+++.-.++|+.+.++.+|++++.+.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 3445556677778899999999998877 23356789999999999999999999999988644
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.52 E-value=0.0011 Score=63.52 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACA---SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
+++..+++...+.-...+..+|..+...-- ..+..+....+++.++..-..--.-+|..+++.-.+..-++.|+.+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455556665544322333333333332211 11235555566666655433223346667777777778888888888
Q ss_pred HhcCC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 036165 409 DKMSE----R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483 (566)
Q Consensus 409 ~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 483 (566)
.+..+ + .+...++++.-||. ++.+-|.++|+--.+....++.-....+.-+...++-..+..+|++.... ++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCC
Confidence 88775 2 55566777766654 56778888888777766666666677777777888888888888888877 666
Q ss_pred CCh--hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 484 PRT--EHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 484 p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|+. .+|..+++-=..-|++..+.++-+++.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 653 678888887778888888877766554
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.52 E-value=5.2e-06 Score=68.27 Aligned_cols=104 Identities=11% Similarity=-0.022 Sum_probs=71.2
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh
Q 036165 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487 (566)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 487 (566)
+++..+-++..+..+...+.+.|++++|...|+......+.+...+..+..++...|++++|...|+++... .+.++.
T Consensus 16 ~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~ 93 (144)
T PRK15359 16 LKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPE 93 (144)
T ss_pred HHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcH
Confidence 333333333334455666677777777777777777766667777777777777777777777777777753 334566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+..+..++.+.|++++|...|++..
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777777777777777765
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=4.8e-05 Score=71.92 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=68.8
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAE 504 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 504 (566)
+...|+.++|+..+..+....|.|+.........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHH
Confidence 334556666666666655555555555555555666666666666666666543 333 3444455566666666666
Q ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 505 AYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 505 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
|...+++.. .+-|+..|..|..+|...|+..+|.....+.....
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 666666554 22355556666666666666666666655555443
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.8e-07 Score=53.77 Aligned_cols=32 Identities=41% Similarity=0.639 Sum_probs=22.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240 (566)
Q Consensus 209 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 240 (566)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=2.3e-05 Score=81.86 Aligned_cols=215 Identities=11% Similarity=0.052 Sum_probs=148.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
+...+..|+..+...+++++|.++.+...+. .|+... |..+...+.+.++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5778899999999999999999999977664 455433 33334455666665554443 233
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQ 470 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 470 (566)
+......++.-...+...+.+ .+...+..+..+|-+.|+.++|..+|+++.+..+.|..+.|.+...+... ++++|+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 333333344333333333333 23346777788888888888888888888887777888888888888888 888888
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C---------------------CCCHHHHHHHHHHH
Q 036165 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-T---------------------EPDLFVWGALLGAC 528 (566)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---------------------~p~~~~~~~l~~~~ 528 (566)
+++.++... |...+++.++.++|.++. . ..-+.++.-+-..|
T Consensus 170 ~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 170 TYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 888887754 333344444444444443 1 12234455555777
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
...++++++..+++.+++.+|.|.-+..-|+..|.+
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 888899999999999999999999998888888764
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=2.1e-05 Score=67.63 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=146.4
Q ss_pred HccCchHHHHHHHHHHHH---hC-CCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHH-HHHHHhcCCh
Q 036165 361 ASAANMRRGKEIHGCAIV---MG-VEGDL-HVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSM-IFGCANHGYC 432 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~ 432 (566)
....+.++..+++..++. .| ..++. .++..++-+....|+.+.|..+++.+.+ |+..-...| ...+-..|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 345578888888887764 33 33443 4566677777888999999999988775 333222222 2234467999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
++|+++|+.+.+..+.|..++.-=+-..-..|+--+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999988888888887777777888888999999988884 7789999999999999999999999999998
Q ss_pred C-CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhCCCCch
Q 036165 513 S-TEP-DLFVWGALLGACKNHG---NIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 513 ~-~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~ 553 (566)
. ..| ++..+..+...+.-.| +.+.|.+.|.++++++|.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 7 455 5555667776654433 788999999999999995543
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=7.4e-05 Score=64.44 Aligned_cols=199 Identities=15% Similarity=0.054 Sum_probs=151.6
Q ss_pred hcCChhHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 036165 327 HNFCNDEAFDTFKEMLS---QG-FCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~---~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
...++++.++++.+++. .| ..++..+ +..++-+....|+.+.|...++.+.+.- +.+..+-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 45678999999999874 34 5566654 6677788889999999999999988764 33555544445556678999
Q ss_pred HHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 402 SEARTLFDKMSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 402 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
++|+++++.+.+. |.+++-.-+...-..|+.-+|++-+.+..+.+..|...|.-+...|...|++++|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999999863 4556666677777789888999999999999999999999999999999999999999999985
Q ss_pred hcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 036165 479 KYKIMPRTEHYACMVDLLGRAG---RLAEAYEMIKTMSTEPDLFVWGALLGACK 529 (566)
Q Consensus 479 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 529 (566)
. -|.++..+..+.+.+.-.| +.+-|.+.|.+.. +-++.-..++...|.
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al-kl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL-KLNPKNLRALFGIYL 233 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhChHhHHHHHHHHH
Confidence 3 2335556667777765555 5677899999887 323334444444443
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=4.8e-05 Score=66.22 Aligned_cols=95 Identities=7% Similarity=0.031 Sum_probs=40.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH-HhcCC--hHHHHHHHHHhhhcCCCCHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGC-ANHGY--CDEAIELFNQMEERKKLDHLSFTAVL 457 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~ 457 (566)
+...+..+...|...|++++|...|++..+ .+...+..+..++ ...|+ .++|.+++++..+..+.+...+..+.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 344444444444444444444444443332 2233333333332 23333 24444444444444444444444444
Q ss_pred HHHhccCChHHHHHHHHHhHH
Q 036165 458 TACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..+...|++++|+..|+++.+
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444443
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.41 E-value=0.00015 Score=76.01 Aligned_cols=233 Identities=11% Similarity=0.090 Sum_probs=156.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHH-HHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 036165 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIP-SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220 (566)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 220 (566)
.+...|..|+..+...|++++|.++.+...+. .|+...+- .+...+.+.++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 46668899999999999999999999977664 55544332 233345555555544444 23
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHH
Q 036165 221 IDMYSKCGSVEKAKKVFDEMVE--KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298 (566)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 298 (566)
+.......++.-+..+...+.+ .+..++..+..+|-+.|+.++|..+++++.+.. +-|....|.+...|+.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333333444333333333322 234477788889999999999999999998876 55778889999898888 9999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 036165 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 299 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
|.+++.+.... +...+++..+.+++.++.... |+. ++.-..+.+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHHHHh
Confidence 99998887765 777788899999999987753 322 2222223333333
Q ss_pred h-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 036165 379 M-GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCA 427 (566)
Q Consensus 379 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 427 (566)
. |...-..++..+-..|.+.++++++..+++.+.+ .|.....-++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2 3333455666777788888888888888888775 45556666666665
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=2.5e-05 Score=64.56 Aligned_cols=126 Identities=13% Similarity=0.079 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEHYACM 492 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 492 (566)
.|..++..+ ..++...+...++.+.+..+.+ ......+...+...|++++|...|+.+... ...|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 344555555 4778888888888888875544 234555667888899999999999999876 42222 1234457
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 493 VDLLGRAGRLAEAYEMIKTMSTE-PDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
..++...|++++|+..++..... .....+.....++.+.|+.++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78888999999999999876532 344556667788999999999999998764
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=0.00017 Score=74.77 Aligned_cols=129 Identities=8% Similarity=-0.044 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHH
Q 036165 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFG 425 (566)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 425 (566)
+...+..|.......|.+++|..+++.+.+..+. +......++..+.+.+++++|...+++... | +......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 3444444444445555555555555554444322 334444445555555555555555555443 2 22333444444
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
+.+.|++++|..+|+++....+.+..++..+..++...|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555543333344555555555555555555555555544
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00026 Score=61.69 Aligned_cols=155 Identities=17% Similarity=0.089 Sum_probs=75.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCh
Q 036165 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH----VGLV 466 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 466 (566)
-...|.+.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+ -.+..|.+.|..++.+ .+.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhccchhh
Confidence 3444555566666666555522 222222223334444555556655555554 2233444444444332 3345
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHG-NIELAEIAAKH 543 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 543 (566)
.+|.-+|++|.++ .+|++.+.+....++...|++++|..+++.... ..++.+...++-+-...| +.+...+.+.+
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 5566666666542 455555566556666666666666666665552 234444444443333333 33334444555
Q ss_pred HhhhCCCC
Q 036165 544 LSELEPES 551 (566)
Q Consensus 544 ~~~~~p~~ 551 (566)
.....|+.
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 54455544
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=2.4e-05 Score=74.72 Aligned_cols=125 Identities=15% Similarity=0.062 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCh
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLV 466 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (566)
....|+..+...++++.|+.+|+++.+.++.....++..+...++..+|.+++++.....+.+...+......|.+.+++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 44456667777889999999999998866666677888888888899999999999877777777888888889999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+.|.++.+++.+. .+-+..+|..|+.+|.+.|++++|+..++.++
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999864 23345699999999999999999999998776
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.0002 Score=67.85 Aligned_cols=146 Identities=16% Similarity=-0.010 Sum_probs=121.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
....+...|++++|+..++.+.. | |+..+......+...++.++|.+.++++....+........+..++.+.|++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 34445677899999999998774 4 56666677788999999999999999999976666778889999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
+|+.+++.... ..+-|+..|..|..+|...|+..+|....- .++...|+++.|+..+..+.+.
T Consensus 392 eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA---------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH---------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999886 456788999999999999999988876654 4478899999999999999875
Q ss_pred C-CCCch
Q 036165 548 E-PESAA 553 (566)
Q Consensus 548 ~-p~~~~ 553 (566)
. ++.++
T Consensus 455 ~~~~~~~ 461 (484)
T COG4783 455 VKLGFPD 461 (484)
T ss_pred ccCCcHH
Confidence 4 44433
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=2.9e-05 Score=61.83 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD----LFVWGAL 524 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l 524 (566)
.++..++..+...|++++|.+.++.+...+.-.+ ....+..++.++.+.|++++|...++++. ..|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566677778888899999999988886521111 13456678888999999999999998876 2343 4567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 525 LGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
..++.+.|+.++|...++++++..|+++.....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888899999999999999999999988765543
No 139
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.23 E-value=6.7e-05 Score=69.45 Aligned_cols=138 Identities=14% Similarity=0.206 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA-CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
.+|..++....+.+..+.|..+|++..+....+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 4678888888888889999999999986555556666666665 33467777799999999986 45677889999999
Q ss_pred HHhcCCHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 496 LGRAGRLAEAYEMIKTMSTE-PD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
+.+.|+.+.|..+|++.... |. ...|...+.--.+.|+.+.+..+.+++.+..|++.....
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999998832 33 358999999999999999999999999999998765444
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.5e-06 Score=50.07 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=31.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCc
Q 036165 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179 (566)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 179 (566)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988874
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.18 E-value=7.4e-05 Score=74.89 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=102.2
Q ss_pred CChhHHHHHHHHHHh--c---CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc--------CChHHHHHHHHHhHHhc
Q 036165 414 RNTVTWNSMIFGCAN--H---GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV--------GLVELGQRLFNMMQEKY 480 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~ 480 (566)
.+...|...+.+... . ++...|..+|++..+..|.+...|..+..++... ++...+.+..++.....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 566677777666443 2 2366888888888887666666666655544322 12334444444433321
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
..+.++..|..+.-.+...|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|.+++.|
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 234456778888777778899999999999988 668888899999999999999999999999999999988754
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=6.2e-05 Score=61.49 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
...+...+...|++++|...++++....+.+...+..+..++...|++++|..+++...+. .+.+...+..+..+|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 3444555556666666666666665555556666666666666666666666666666543 23345555566666666
Q ss_pred cCCHHHHHHHHHhcC
Q 036165 499 AGRLAEAYEMIKTMS 513 (566)
Q Consensus 499 ~g~~~~A~~~~~~~~ 513 (566)
.|++++|...+++..
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666666655
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.15 E-value=4.9e-05 Score=73.03 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=63.4
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHH
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TE-PDLFVWGALLGACKNHGNIE 535 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~ 535 (566)
..+...|++++|+..++++++. .+-+...|..+..+|.+.|++++|...++++. .. .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666666653 22344555666666666666666666666665 22 34555666666666777777
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 536 LAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 536 ~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
+|+..++++++++|+++.+...+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777777777766666665553
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=2.4e-05 Score=69.32 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=47.8
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
.+.++|.+|+..|.++++. .+-|+..|..-..+|.+.|.++.|.+-.+..+ ..| -..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3444555555555555432 12233334444455555555555555554444 122 2334555555555555555555
Q ss_pred HHHHHHhhhCCCCchHHHHHHH
Q 036165 539 IAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 539 ~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
+.|+++++++|++.++...|..
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHH
Confidence 5555555555555555555443
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.12 E-value=5.3e-06 Score=48.85 Aligned_cols=33 Identities=39% Similarity=0.551 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC
Q 036165 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177 (566)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 177 (566)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.08 E-value=0.00014 Score=62.17 Aligned_cols=125 Identities=11% Similarity=0.053 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhc-C-CCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEER-K-KLD-HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
..+..+...+...|++++|...|++..+. . +++ ...+..+..++.+.|++++|...++++.+. .+-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 34455555555566666666666665543 1 111 234555555556666666666666655543 112234444455
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
.+|...|+...+..-++... ..+++|.+.++++++.+|++ +..+...+..
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~ 163 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKT 163 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHh
Confidence 55555555444433222211 12677888888888888887 4445544443
No 147
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.08 E-value=0.01 Score=55.87 Aligned_cols=415 Identities=11% Similarity=0.057 Sum_probs=240.6
Q ss_pred HHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCC
Q 036165 134 MLFDEIPK--TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211 (566)
Q Consensus 134 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 211 (566)
++=+++.. .|+.+|..||.-+..+|.+++..+++++|..- .+--...|..-+++-...+++...+.+|.+.++..+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 55556654 37889999999999999999999999999653 222344666667766677899999999999988754
Q ss_pred CchhHHHHHHHHHHhcCC---------HHHHHHHHHhc--CC-CChhhHHHHHHHHH---HcCCh------hHHHHHHHH
Q 036165 212 TDAFVVSSLIDMYSKCGS---------VEKAKKVFDEM--VE-KDIVAMNAMVSGYV---QRGLA------TEALNLVEE 270 (566)
Q Consensus 212 ~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~--~~-~~~~~~~~li~~~~---~~g~~------~~a~~~~~~ 270 (566)
+...|...++...+.+. +-+|.++.-.. .+ .....|+..+..+- ..|.| +.....+.+
T Consensus 108 -~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 108 -NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred -cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 46667666665544431 22232222221 12 24445666655443 23444 445556666
Q ss_pred hhhCCCCccHHH------HHHHHHHH-h------cCCCHHHHHHHHHHHHH--cCCCC----Chhh-----------HHH
Q 036165 271 IGTPRVKPNVVT------WNTLISGF-S------KSGDQVMVSKLFQLMRA--KGVEP----DVVS-----------WTS 320 (566)
Q Consensus 271 m~~~~~~p~~~~------~~~ll~~~-~------~~~~~~~a~~~~~~~~~--~~~~~----~~~~-----------~~~ 320 (566)
|...-+.-=... |..=++.. + ..--+..|...++++.. .|... +..+ |-.
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 664321110111 11111111 0 01124456666666543 23222 1112 222
Q ss_pred HHHHHHhc-----CCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 036165 321 VISGLVHN-----FCN--DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393 (566)
Q Consensus 321 li~~~~~~-----g~~--~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 393 (566)
.|.--... |++ ...--++++.... +......|---...+...++-+.|.+..... .+..+.....+..
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg----~~~spsL~~~lse 341 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERG----IEMSPSLTMFLSE 341 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhc----ccCCCchheeHHH
Confidence 22211111 111 1112223332221 2233334443444445556666665544432 2222222222233
Q ss_pred HHHhcCCHHHHHHHHHhcC---------------------------------CCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 394 MYAKCGFISEARTLFDKMS---------------------------------ERNTVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
.|.-..+-++....|++.. ..-...|...+..-.+....+.|..+|-
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333333222211 0223457777887778888999999999
Q ss_pred Hhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC
Q 036165 441 QMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--EP 516 (566)
Q Consensus 441 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p 516 (566)
+..+. ..++...+++++.-++ .|+...|-.+|+.-... ++.+...-+-.+..+.+.++-+.|..+|++... ..
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~ 498 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK 498 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH
Confidence 99887 5677788899888654 68889999999987764 333333345667788899999999999997652 22
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 517 D--LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 517 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+ ...|..++.--..-|+...+..+-+++.+..|.....-+.++
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHH
Confidence 3 678999999999999999999999999999987755444443
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=7.6e-06 Score=48.54 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 279 (566)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888887777776
No 149
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.05 E-value=1.2e-05 Score=56.58 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=47.8
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
.+.|++++|.+.++++. .+.+...+..++.+|.+.|++++|...++++...+|+++.++..++.|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 45677888888887776 233677777777888888888888888888888888877777776654
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00012 Score=69.98 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 226 (566)
-..|+..+...++++.|+++|+++.+.. |+ ....+.+.+...++-.+|.+++.+.++.. +.+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666777888999999999988763 44 34456677767778888888888888653 4567777777888889
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 227 CGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 227 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
.++++.|+++.++..+ | +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999988844 3 45589999999999999999998888775
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.03 E-value=1.8e-05 Score=54.96 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
+...+.+.|++++|.+.|+++. ..| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4677889999999999999988 335 577888888999999999999999999999999885
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=9.1e-05 Score=55.89 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=59.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKN 530 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 530 (566)
+..+...+...|++++|...++.+.+. .+.+...+..+..++...|++++|.+.+++.. ...+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 344555556666777777777666543 12233555566666666777777777776654 22334566666677777
Q ss_pred cCCHHHHHHHHHHHhhhCC
Q 036165 531 HGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~p 549 (566)
.|++++|...++++++..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777776665
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.2e-05 Score=47.30 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc
Q 036165 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278 (566)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 278 (566)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00074 Score=55.73 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=53.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH--hHHHHHHHHHHhcCCHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPT---SATISSILPACASAANMRRGKEIHGCAIVMGVEGDL--HVRSALVDMYAKCGFIS 402 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 402 (566)
.++.+.+...++.+.+.. +.+ ......+...+...|++++|...|+.+......+.. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555432 111 111222334444555555555555555554422221 12233455555666666
Q ss_pred HHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036165 403 EARTLFDKMSER--NTVTWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 403 ~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
+|...++....+ ....+......|...|+.++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666554331 223344445555566666666665554
No 155
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.94 E-value=0.025 Score=55.65 Aligned_cols=402 Identities=11% Similarity=0.043 Sum_probs=217.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcc-hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF-VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 221 (566)
+-..|+.+|.--....+.+.+..++..+... .|-.. -|......-.+.|..+.+.++|++.+.. ++-+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666665544444556666666666643 33333 3344444446777888888888887763 666677776665
Q ss_pred HHHH-hcCCHHHHHHHHHhcCC------CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHh---
Q 036165 222 DMYS-KCGSVEKAKKVFDEMVE------KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--- 291 (566)
Q Consensus 222 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--- 291 (566)
..+. ..|+.+.....|+.... .+...|...|..-..++++.....++++.++. |. ..|+....-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHH
Confidence 5544 44677777777777633 24456777777777788888888888888752 21 11222211111
Q ss_pred cC------CCHHHHHHHHHHHHHc-CC---CCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036165 292 KS------GDQVMVSKLFQLMRAK-GV---EPDVVSWTSVISGLVH-NFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360 (566)
Q Consensus 292 ~~------~~~~~a~~~~~~~~~~-~~---~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 360 (566)
+. ...+.+.++-...... .. .+....+..-+.-... .+..+++...+.+.. ..--.++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~ 265 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVY 265 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHH
Confidence 11 1222222222221110 00 0000001100000000 000111111110000 0000111
Q ss_pred HccCchHHHHHHHHHHHHh---CCC----CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcC
Q 036165 361 ASAANMRRGKEIHGCAIVM---GVE----GDLHVRSALVDMYAKCGFISEARTLFDKMSER---NTVTWNSMIFGCANHG 430 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 430 (566)
.........+..++.-++. .++ ++...|...+.--.+.|+.+.+.-.|++..-| -...|--.+.-....|
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSG 345 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcC
Confidence 1111222222223332221 111 24567788888888899999999999887753 2234444444444558
Q ss_pred ChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHH--
Q 036165 431 YCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACMVDLLGRAGRLAEAY-- 506 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~-- 506 (566)
+.+-|..++....+- .+..+.+-..-...+-..|+++.|..+++.+.+. . |+.. .-..-+....+.|..+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 888888888777766 3333333333333455678999999999999886 3 5542 2223345567788888887
Q ss_pred -HHHHhcC-CCCCHHHHHHHH----H-HHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 507 -EMIKTMS-TEPDLFVWGALL----G-ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 507 -~~~~~~~-~~p~~~~~~~l~----~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.++.... .+-+......+. + .+.-.++.+.|..++.++.+..|++...+..+.++...+
T Consensus 423 ~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 423 NELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 4444433 222222222222 1 234557889999999999999999999999888876543
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.91 E-value=0.039 Score=56.78 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=117.6
Q ss_pred hcCChHHHHHHhccCCC--CCcchHHHHHHH--HHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHH
Q 036165 125 ECQNIHHARMLFDEIPK--TNIHRWIALTGA--YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200 (566)
Q Consensus 125 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 200 (566)
..+++..|.+..+++.+ ||. .|...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 34566666666666544 222 23333333 34677777887777776655444 66677777777777777888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcCCCChhhHHHHHHHHHHc-CCh---------hHHHH
Q 036165 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK----AKKVFDEMVEKDIVAMNAMVSGYVQR-GLA---------TEALN 266 (566)
Q Consensus 201 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~a~~ 266 (566)
+|++.... .|+......+..+|.|.+++.+ |.+++...++.--.-|+. ++...+. ... .-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHH
Confidence 88777765 3556666666666776665543 455555444433333433 3333322 111 22444
Q ss_pred HHHHhhhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036165 267 LVEEIGTPR-VKPNVVTWNTLISGFSKSGDQVMVSKLFQL-MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344 (566)
Q Consensus 267 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 344 (566)
.++.+.+.+ -.-+..-...-+..+...|.+++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555554433 111222222233344456667777777633 333322333444445556666667777777777777666
Q ss_pred C
Q 036165 345 G 345 (566)
Q Consensus 345 ~ 345 (566)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 4
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.045 Score=56.35 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=128.1
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--CCcchHHHHHHHHH
Q 036165 80 AYSERIEIYI--RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--TNIHRWIALTGAYA 155 (566)
Q Consensus 80 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 155 (566)
.|..+++++. +.|+.++|..+++.....+.. |..+...+...|...++.++|..++++... |+......+..+|+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayv 121 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 4566666655 578888899888877665544 778888999999999999999999999877 55555556667788
Q ss_pred hcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccC----------ChhHHHHHHHHHHHcC-CCCchhHHHHHHHHH
Q 036165 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS----------DIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMY 224 (566)
Q Consensus 156 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~ 224 (566)
+-+++.+-.+.--+|.+ ..+-+.+.|=++++...+.- -..-|.+..+.+++.+ .-.+..=...-....
T Consensus 122 R~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 87777654333333333 23445566656666543321 1234666666666654 112222223344556
Q ss_pred HhcCCHHHHHHHHHh-c----CCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCC
Q 036165 225 SKCGSVEKAKKVFDE-M----VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 225 ~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
...|++++|.+++.. . ...+...-+.-+..+...++|.+..++-.++...|
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 678899999999832 2 33344555666778888899999988888888775
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.86 E-value=5.5e-05 Score=55.68 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP-DLFVWGALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (566)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....| +......+..+|.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45555555555555441111123334445555566666666666655522122 22333333455556666666665555
Q ss_pred H
Q 036165 543 H 543 (566)
Q Consensus 543 ~ 543 (566)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.84 E-value=6.4e-05 Score=52.89 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCC
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG-NIELAEIAAKHLSELEP 549 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 549 (566)
++..|..+...+.+.|++++|+..|++.. .+.+...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888888888888999988888877 3345777888888888988 68999999999998887
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0021 Score=59.77 Aligned_cols=147 Identities=15% Similarity=0.192 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHhhhc-C-CCCH----HHHHHHHHHHhc
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH-GYCDEAIELFNQMEER-K-KLDH----LSFTAVLTACCH 462 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~-~-~~~~----~~~~~l~~~~~~ 462 (566)
..+..|.+.|++..|-+++ ..+...|... |++++|++.|++..+. . .... ..+..+...+.+
T Consensus 99 ~A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 3444555555555554443 3344555555 6777777777776655 1 1111 235556666777
Q ss_pred cCChHHHHHHHHHhHHhcCCCC-----Ch-hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC------CHHHHHHHHHHHH
Q 036165 463 VGLVELGQRLFNMMQEKYKIMP-----RT-EHYACMVDLLGRAGRLAEAYEMIKTMS-TEP------DLFVWGALLGACK 529 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p------~~~~~~~l~~~~~ 529 (566)
.|++++|.++|+++... -... +. ..+...+-++...|+...|.+.+++.. ..| .......|+.+|-
T Consensus 168 l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp TT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 77777777777776653 2211 11 122233445566677777777777654 212 1334455666664
Q ss_pred hc--CCHHHHHHHHHHHhhhC
Q 036165 530 NH--GNIELAEIAAKHLSELE 548 (566)
Q Consensus 530 ~~--g~~~~A~~~~~~~~~~~ 548 (566)
.. ..+++|..-|+.+.+++
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---
T ss_pred hCCHHHHHHHHHHHcccCccH
Confidence 32 24555555555555444
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.00014 Score=58.97 Aligned_cols=98 Identities=11% Similarity=-0.091 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLG 526 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 526 (566)
+....-.+..-+...|++++|+++|+-+..- -+-+..-|-.|.-++...|++++|...|..+. ...|+..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4445666777788999999999999998854 23356677889999999999999999999876 4457888899999
Q ss_pred HHHhcCCHHHHHHHHHHHhhhC
Q 036165 527 ACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
++...|+.+.|++.|+.++..-
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999744
No 162
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.029 Score=52.10 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=113.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTS--ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 404 (566)
-.|+++.|.+-|+.|... |.. ..+..+.-...+.|..+.|+.+-+.....-.. -.....+.+...+..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHH
Confidence 356677777777776542 221 12334444445666666666666665544322 234555666777777777777
Q ss_pred HHHHHhcCC-----CChhH--HHHHHHHHH---hcCChHHHHHHHHHhhhcCCCCHH-HHHHHHHHHhccCChHHHHHHH
Q 036165 405 RTLFDKMSE-----RNTVT--WNSMIFGCA---NHGYCDEAIELFNQMEERKKLDHL-SFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 405 ~~~~~~~~~-----~~~~~--~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
+++++.-.. +++.- -..|+.+-. -.-+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.++
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL-~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL-APDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCccchHHHHHHHHHHhccchhhhhhHH
Confidence 777764432 33221 111222111 122344454444444332 33322 3344455666777777777777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS----T-EPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+.+-+. .|.+.++...+ +.+.|+. +++-+++.. . +.+..+...+..+....|++..|...-+.+....
T Consensus 287 E~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 776643 44444443322 3344432 222222111 1 2344555556666666677776666666666666
Q ss_pred CCCchHHHHHHHHH
Q 036165 549 PESAANNMLLTDLY 562 (566)
Q Consensus 549 p~~~~~~~~l~~~~ 562 (566)
|.. .+|.+|++|-
T Consensus 360 pre-s~~lLlAdIe 372 (531)
T COG3898 360 PRE-SAYLLLADIE 372 (531)
T ss_pred chh-hHHHHHHHHH
Confidence 644 4455555554
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00085 Score=53.20 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMV 493 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 493 (566)
++..++..+...|++++|.+.|+++.+..+.+ ...+..+..++.+.|++++|...++.+...+.-.+ ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666667777777777777776653322 34556677777777777777777777765411111 134566666
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~ 513 (566)
.++.+.|++++|...++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 77777777777777777765
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00036 Score=52.50 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|.+.++..... .+.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 4445566666777777777777776665555566667777777777777777777777653 23334566677777777
Q ss_pred cCCHHHHHHHHHhcC
Q 036165 499 AGRLAEAYEMIKTMS 513 (566)
Q Consensus 499 ~g~~~~A~~~~~~~~ 513 (566)
.|++++|...+++..
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 777777777776654
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.78 E-value=0.00098 Score=54.08 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
...-.+...+...|++++|.++|+.... .+..-|..|..++...|++++|+..|.......+.|+.++-.+..++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3344455666677888888888876653 3455677777777778888888888888877767777788888888888
Q ss_pred cCChHHHHHHHHHhHHh
Q 036165 463 VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~ 479 (566)
.|+.+.|.+.|+.++..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888877765
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=4.1e-05 Score=43.80 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHCCC
Q 036165 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175 (566)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 175 (566)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877663
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.73 E-value=0.00016 Score=51.59 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=57.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 493 VDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
-..|.+.+++++|.++++++. .+.++..|.....++.+.|++++|.+.++++++..|+++........
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 356889999999999999987 33467778888899999999999999999999999999887766543
No 168
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.73 E-value=0.0089 Score=56.46 Aligned_cols=174 Identities=16% Similarity=0.077 Sum_probs=109.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C------hhHHHHHHHHHHh---cCChHHHHHHHHHhhhc-CCCCHHHH
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSER-N------TVTWNSMIFGCAN---HGYCDEAIELFNQMEER-KKLDHLSF 453 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~-~~~~~~~~ 453 (566)
..+...++-.|....+++..+++++.+... + ...-....-++.+ .|+.++|++++..+... ..+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445666677778888888888877752 1 1111122334445 67888888888885554 77777888
Q ss_pred HHHHHHHhc---------cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH----HHHHHH---HhcC----
Q 036165 454 TAVLTACCH---------VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA----EAYEMI---KTMS---- 513 (566)
Q Consensus 454 ~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~---- 513 (566)
..+.+.|.. ....++|+..|.+.- .+.|+...--.++..+...|... +..++- ....
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 877776532 223566777776654 34566544434444455555322 222222 1111
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 514 ---TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 514 ---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
...+-..+.+++.++.-.|+.++|.+.++++.+..|.....-.++.++
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 124555667888999999999999999999999998887766666554
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00047 Score=61.40 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=55.5
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 395 YAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
+.+.+++++|+..|.+..+ .|.+-|..-..+|.+.|.++.|++-.+..+...+.-..+|..|..+|...|++++|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3455666666666666554 3455555556666666666666666666655444444566666666666666666666
Q ss_pred HHHHhHHhcCCCCChhHH
Q 036165 472 LFNMMQEKYKIMPRTEHY 489 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~ 489 (566)
.|++.. .+.|+-.+|
T Consensus 171 aykKaL---eldP~Ne~~ 185 (304)
T KOG0553|consen 171 AYKKAL---ELDPDNESY 185 (304)
T ss_pred HHHhhh---ccCCCcHHH
Confidence 666665 345555544
No 170
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.69 E-value=9.6e-05 Score=46.30 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
.+|..+..+|...|++++|++.++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999998875
No 171
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.00063 Score=65.50 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHH
Q 036165 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK------DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283 (566)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 283 (566)
.+.+......+++.+....+++.+..++-+.... -..|..++|+.|.+.|..++++.+++.=...|+=||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455555666666666666666666666666321 1234456677777777777777776666666666777777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 327 (566)
+.||..+.+.|++..|.++...|...+...+..++..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 77777777777777777766666655555555555544444433
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=0.0001 Score=54.22 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=58.9
Q ss_pred cCChHHHHHHHHHhhhcCC--CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 036165 429 HGYCDEAIELFNQMEERKK--LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 505 (566)
.|+++.|+.+++++.+..+ ++...+..+..++.+.|++++|..+++. .+ ..+ +....-.++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5788999999999988743 2455566688899999999999999988 32 223 234445668899999999999
Q ss_pred HHHHHh
Q 036165 506 YEMIKT 511 (566)
Q Consensus 506 ~~~~~~ 511 (566)
.+++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998876
No 173
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6e-05 Score=43.10 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCC
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.011 Score=48.75 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
--.|..+....|+..+|...|++.... ...|......+.++....+++..|...++.+.+-..-.-++...-.+.+.|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 333444444444445555444444444 3444444444444444444544444444444432111111222333444444
Q ss_pred hcCCHHHHHHHHHhcC
Q 036165 498 RAGRLAEAYEMIKTMS 513 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~ 513 (566)
..|++++|...|+...
T Consensus 172 a~g~~a~Aesafe~a~ 187 (251)
T COG4700 172 AQGKYADAESAFEVAI 187 (251)
T ss_pred hcCCchhHHHHHHHHH
Confidence 4444444444444443
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.095 Score=52.48 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=36.2
Q ss_pred hhHHHHHHHH--HHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 416 TVTWNSMIFG--CANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 416 ~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
...|.-+|.+ ....|..+.|++.--.+.+- .-|....|..+.-+.+....+...-+.|-++.
T Consensus 1019 AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1019 AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3445444443 34467788887765555443 55666777777666666555555555554444
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.067 Score=50.27 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=54.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
+.-+...|+...|.++-.+..=|+..-|...+.+++..++|++-.++... +-.+.-|..++.+|.+.|...+|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 34444555556666655555545555566666666666666555543221 1233455555666666666665555
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
++.++. +..-+..|.++|++.+|.+.--+
T Consensus 259 yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 259 YIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 554421 12344555666666665554433
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.0015 Score=62.95 Aligned_cols=93 Identities=11% Similarity=-0.047 Sum_probs=63.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 503 (566)
..+...|++++|+..|+++.+..+.+...|..+..++...|++++|+..++++.+. -+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 44556677777777777777766666777777777777777777777777777754 1234556667777777777777
Q ss_pred HHHHHHHhcC-CCCCH
Q 036165 504 EAYEMIKTMS-TEPDL 518 (566)
Q Consensus 504 ~A~~~~~~~~-~~p~~ 518 (566)
+|...|+++. ..|+.
T Consensus 88 eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 88 TAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 7777777765 33443
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0012 Score=56.13 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGA 527 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 527 (566)
.+..++..+...|++++|...++++... ...+ ...++..+..+|...|++++|...++++. ..| ...++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 4455555566666666666666666543 1111 12356666666666677777766666655 222 23444444444
Q ss_pred HH-------hcCCHH-------HHHHHHHHHhhhCCCCc
Q 036165 528 CK-------NHGNIE-------LAEIAAKHLSELEPESA 552 (566)
Q Consensus 528 ~~-------~~g~~~-------~A~~~~~~~~~~~p~~~ 552 (566)
+. +.|+++ +|...++++++..|++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 44 666655 56666667777787553
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.58 E-value=0.0019 Score=58.76 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=77.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCC----HHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST-EPD----LFVWG 522 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~ 522 (566)
.|........+.|++++|...|+.+.+. .|+ +..+..++.+|...|++++|...|+++.. .|+ ...+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4555554446678899999999988876 233 24667788889999999999999988872 233 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.++..+...|+.++|...++++++..|++.....
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 6777888999999999999999999998875543
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.0017 Score=60.52 Aligned_cols=121 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHhhhc----CCCCH--HHHHHHHHHHhcc-CChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhc
Q 036165 431 YCDEAIELFNQMEER----KKLDH--LSFTAVLTACCHV-GLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRA 499 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~----~~~~~--~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 499 (566)
++++|.+.+++..+. ..++. ..+..+...|... |++++|++.|+++.+.+..... ..++..++..+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 555555555555543 12221 2455666678777 8999999999998765432222 24566788899999
Q ss_pred CCHHHHHHHHHhcCC---C-C----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 500 GRLAEAYEMIKTMST---E-P----DLF-VWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 500 g~~~~A~~~~~~~~~---~-p----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
|++++|.++|+++.. . + +.. .+...+-++...||...|.+.+++.....|.-
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999998751 1 1 121 22333445678899999999999999888743
No 181
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.57 E-value=0.0018 Score=55.18 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=73.6
Q ss_pred HHHHHhc--CCCChhhHHHHHHHHHHc-----CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 234 KKVFDEM--VEKDIVAMNAMVSGYVQR-----GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 234 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
...|+.. ..++-.+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 3455555 456777788888777753 6777788888889999999999999999888765 3221 01111111
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 036165 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365 (566)
Q Consensus 307 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 365 (566)
- . ---.+-+-|++++++|...|+.||..|+..++..+.+.+.
T Consensus 112 F--------------~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 F--------------M---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred h--------------c---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 0 0012335677777777777777777777777777766654
No 182
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.00065 Score=58.03 Aligned_cols=95 Identities=8% Similarity=-0.025 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLG 526 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 526 (566)
..+..+...+...|++++|...++++.+. ...+. ...+..+..++.+.|++++|...++++. ..| +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35666777777788888888888877754 22221 3466677777777788888877777766 233 4555666667
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 036165 527 ACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~ 546 (566)
.+...|+...+...++.++.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH
Confidence 77777777777766666554
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0052 Score=55.24 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=81.4
Q ss_pred cCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcC--CCCCHH
Q 036165 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG---RLAEAYEMIKTMS--TEPDLF 519 (566)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--~~p~~~ 519 (566)
..+.|...|..|..+|...|+++.|...|....+. .++++..+..+.+++.... ...++..+++++. .+.|+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 36777888888888888888888888888888764 3445666777777665443 3457788888887 334666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+..-|...+...|++.+|...|+.|++..|.+..-.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 677777888888999999999999988777665433
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.55 E-value=0.0022 Score=61.90 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhC--CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036165 246 VAMNAMVSGYVQRGLATEALNLVEEIGTP--RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323 (566)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 323 (566)
.....++..+....+.+++..++.+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|.||+
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 33444444444445555555555555432 1111223334555556665555666555555555566666666666666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 362 (566)
.+.+.|++..|.++...|..++...+..|+...+.+|.+
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666555555555544444554444444433
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0011 Score=49.71 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhCCC-CccHHHHHHHHHHHhcC
Q 036165 249 NAMVSGYVQRGLATEALNLVEEIGTPRV-KPNVVTWNTLISGFSKS 293 (566)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~ 293 (566)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R 74 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR 74 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Confidence 3445555566777777778887777777 77777787777776654
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.00062 Score=57.91 Aligned_cols=100 Identities=11% Similarity=-0.089 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 036165 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD----LFVWGALLGACKNHGNIELAEIA 540 (566)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 540 (566)
+..+...+..+....+..-....|..++..+...|++++|...+++.. ..|+ ..+|..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443221333335667888888999999999999999986 2222 35788899999999999999999
Q ss_pred HHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 541 AKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 541 ~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
++++++..|.....+..++.+|...
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999843
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.52 E-value=0.0012 Score=49.51 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCC-CCCcchHHHHHHHHcccC--------ChhHHHHHHHHHHHcCCCCchhHH
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLS--------DIGTGEKIHSLVLKHSFGTDAFVV 217 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 217 (566)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566777778999999999999999999 999999999999876543 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 036165 218 SSLIDMYSK 226 (566)
Q Consensus 218 ~~l~~~~~~ 226 (566)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.011 Score=48.89 Aligned_cols=119 Identities=10% Similarity=0.018 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC---CHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP---DLFVW 521 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 521 (566)
..|....-..|..+..+.|++.+|...|++...- -+.-|....-.+.++....+++.+|...+++.. ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4567777788899999999999999999999874 456678888899999999999999999999876 222 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
..+.+.+...|++++|+..|+.++...| .+......+.++.+||
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qg 207 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhc
Confidence 6777899999999999999999999888 4566778888888776
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.42 E-value=0.12 Score=49.18 Aligned_cols=415 Identities=11% Similarity=0.065 Sum_probs=211.1
Q ss_pred HhhcCChHHHHHHhccCCCC---Ccch------HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHH--Hcc
Q 036165 123 YTECQNIHHARMLFDEIPKT---NIHR------WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA--CGH 191 (566)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~---~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~ 191 (566)
+.+.+++.+|.++|.++-.. +... -+.++++|..+ +.+.-...+....+. .| ...|..+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 44678888888888877542 2122 23455666543 344444444444432 23 3334444443 346
Q ss_pred cCChhHHHHHHHHHHHc--CCC------------CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhhHH
Q 036165 192 LSDIGTGEKIHSLVLKH--SFG------------TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--------KDIVAMN 249 (566)
Q Consensus 192 ~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 249 (566)
.+++++|.+.+..-.+. +.. +|...-+..++++...|++.+++.+++++.+ -+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77788888877766554 211 1222235567777888888888888888732 3677787
Q ss_pred HHHHHHHHc--------CC-------hhHHHHHHHHhhhC------CCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 036165 250 AMVSGYVQR--------GL-------ATEALNLVEEIGTP------RVKPNVVTWNTLISGFSKSG--DQVMVSKLFQLM 306 (566)
Q Consensus 250 ~li~~~~~~--------g~-------~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~ 306 (566)
.++-.+.++ .. ++.+.-...+|... .+.|....+..++....-.. ...--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 755554432 11 22233333333321 23344444444444333221 222223333333
Q ss_pred HHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 036165 307 RAKGVEPDVV-SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP----TSATISSILPACASAANMRRGKEIHGCAIVMGV 381 (566)
Q Consensus 307 ~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 381 (566)
...-+.|+-. ....++..+.. +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+..+....+
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3333444322 12223333333 4555555554443322111 124577777788888888888888877765443
Q ss_pred CCcHh-----HHHHHHHHHHh----cCCHHHHHHHHHhcCCCChh---HHHHHHH---HHHhcCC-hHHHHHHHHHhhhc
Q 036165 382 EGDLH-----VRSALVDMYAK----CGFISEARTLFDKMSERNTV---TWNSMIF---GCANHGY-CDEAIELFNQMEER 445 (566)
Q Consensus 382 ~~~~~-----~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~l~~---~~~~~~~-~~~A~~~~~~~~~~ 445 (566)
..... .-..+.+..+. ..+...-..+|+.+...|+. ...-|+. -+-+.|. -++|+++++.+.+-
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 32211 00112222221 11222333444444433322 1222222 2334454 78888888888876
Q ss_pred CCCCHHHHHHHHH----HHhc---cCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHH--HHhcCCHHHHHHHHHhc
Q 036165 446 KKLDHLSFTAVLT----ACCH---VGLVELGQRLFNMMQEKYKIMPRT----EHYACMVDL--LGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 446 ~~~~~~~~~~l~~----~~~~---~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~ 512 (566)
.+-|...-|.+.. +|.. ...+..-..+-+-+.+. |+.|-. ..-|.|.++ +...|++.++.-.-.-.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5556554443332 2221 12233333333333444 776643 344555443 45678888775443322
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 513 S-TEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 513 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
. ..|++.+|.-++-+.....++++|...+..+
T Consensus 489 ~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 2 4688888888888888888888888777553
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.17 Score=50.69 Aligned_cols=352 Identities=15% Similarity=0.062 Sum_probs=171.3
Q ss_pred CCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHH----------HHHHhcCCHHHHHHHHHhcCCCCh
Q 036165 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI----------DMYSKCGSVEKAKKVFDEMVEKDI 245 (566)
Q Consensus 176 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~ 245 (566)
.|-+..|..+.......-.++.|+..|-+... -+-......|- ..-.-.|++++|++++-++-.+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 46666777776666666666666665544322 11111111111 111224788888888887766664
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhCCC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036165 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRV--KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323 (566)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 323 (566)
.|..+.+.|+|-...++++.=- .+. ..-...++.+...++....+++|.+.+..-... ...+.
T Consensus 766 -----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 3455566677776666665311 111 111345666666666666666666666543211 12344
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 403 (566)
++.+..++++-+.+.+. ++.+...+-.+...+.+.|.-++|.+.+-+ .+.+ .+.+..+...++|.+
T Consensus 831 cly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHH
Confidence 55555555444433333 344555566666777777776666554432 1211 223455566667777
Q ss_pred HHHHHHhcCCCChhHHHH--------------HHHHHHhcCChHHHHHHHHHhhhc----CCCCHHH-HHHHHHHH----
Q 036165 404 ARTLFDKMSERNTVTWNS--------------MIFGCANHGYCDEAIELFNQMEER----KKLDHLS-FTAVLTAC---- 460 (566)
Q Consensus 404 A~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~-~~~l~~~~---- 460 (566)
|.++-++..-|.+.+.-+ -|..+.+.|+.-+|.+++.+|-+. ..|-... -..++.++
T Consensus 897 avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 777766655444333211 133344556655666666666544 1222111 11111111
Q ss_pred -----------hccCChHHHHHHHHHhHHhc--CCC------CChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC
Q 036165 461 -----------CHVGLVELGQRLFNMMQEKY--KIM------PRTEHYACMVDLLGRAGRLAEAYEMIKTMS----TEPD 517 (566)
Q Consensus 461 -----------~~~g~~~~a~~~~~~~~~~~--~~~------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~ 517 (566)
...|..++|..+++...-.. .+. ....++-.|..-....|..+.|+..--... .-|.
T Consensus 977 h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP 1056 (1189)
T KOG2041|consen 977 HRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP 1056 (1189)
T ss_pred HHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH
Confidence 12344555554443321110 000 112334445555667788888876543333 2255
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 518 LFVWGALLGACKNH---GNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 518 ~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
...|..+.-+-+.. |--.+|.--++..-++......-|..|+
T Consensus 1057 ~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La 1101 (1189)
T KOG2041|consen 1057 AEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLA 1101 (1189)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 55665555443333 3334444444443334333333444443
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0088 Score=55.44 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA-CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (566)
+|..+++..-+.+..+.|..+|++.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45666666666666777777777776432 2233444433333 33345666677777777665 334677777888888
Q ss_pred HhcCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC
Q 036165 396 AKCGFISEARTLFDKMSE--R----NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 448 (566)
.+.|+.+.|+.+|++... + ....|...+.--.+.|+.+.+.++.+++.+..+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888888888888888775 2 2347777787777888888888888888776433
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.0064 Score=56.55 Aligned_cols=146 Identities=12% Similarity=0.025 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc----C--CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh---cCC-CCChh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER----K--KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK---YKI-MPRTE 487 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~ 487 (566)
.|..|...|--.|+++.|+...+.=... . ......+..+.+++.-.|+++.|.+.++..... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678888887765543322 1 112346888888888899999999888765432 021 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----hC-CC-Cch
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS--------TEPDLFVWGALLGACKNHGNIELAEIAAKHLSE----LE-PE-SAA 553 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-p~-~~~ 553 (566)
..-+|...|.-...+++|+.++.+-. .......+.+|..++...|..++|....+..++ .+ |. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 56678888888888899988887654 124567889999999999999999888887764 22 22 345
Q ss_pred HHHHHHHHHh
Q 036165 554 NNMLLTDLYA 563 (566)
Q Consensus 554 ~~~~l~~~~~ 563 (566)
...+|+++-.
T Consensus 357 ar~Nlsdl~~ 366 (639)
T KOG1130|consen 357 ARDNLSDLIL 366 (639)
T ss_pred hhhhhHHHHH
Confidence 5566665543
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.00053 Score=48.12 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+..+|..+...+...|++++|+..|+++++.+|+++.++..+|.+|..+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999998875
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.29 E-value=0.034 Score=50.23 Aligned_cols=53 Identities=11% Similarity=-0.014 Sum_probs=23.7
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 457 LTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 457 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
.+-|.+.|.+..|..-++.+.+.+.-.| ..+....++.+|...|..++|.++.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3344445555555555555554422111 1233334445555555555554443
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.26 Score=50.01 Aligned_cols=335 Identities=14% Similarity=0.044 Sum_probs=159.4
Q ss_pred HCCCCCCcchHHH-----HHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC-
Q 036165 172 IQGLKQNIFVIPS-----VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG---SVEKAKKVFDEMVE- 242 (566)
Q Consensus 172 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~- 242 (566)
..|++.+..-|.. +|.-+...+.+..|.++-..+...-..- ..++......+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666555543 4555566677778877776664321111 456666666666553 33445555555554
Q ss_pred -CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCC----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhh
Q 036165 243 -KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK----PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317 (566)
Q Consensus 243 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 317 (566)
....+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-++...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 45567778888788888888888877642222111 122234445555666677766666666554430 1111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH-----HHhCCCCcHhHHHHHH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA-----IVMGVEGDLHVRSALV 392 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~ 392 (566)
+... ..+...|..+|.+..++. |..+ +-..|....+....-.+.-+- ...+..|+ .....
T Consensus 581 l~~~------l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 581 LFMT------LRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred HHHH------HHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 1111 122334444444443321 0000 011111111111111111000 00111122 12233
Q ss_pred HHHHhcCCHHHHHH----------HHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHH
Q 036165 393 DMYAKCGFISEART----------LFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457 (566)
Q Consensus 393 ~~~~~~g~~~~A~~----------~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 457 (566)
+.+.+.....-..+ +.+.+.. -.-.+.+--+.-+...|+..+|.++-.+. ..||...|-.-+
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~wLk~ 722 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWWLKL 722 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHHHHH
Confidence 33333322111111 1111111 11123334444555666666666554443 356666666666
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (566)
.++...+++++-+++-+..+ .+.-|.-.+.++.+.|+.+||.+++-+....+ -...+|.+.|++.+|
T Consensus 723 ~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHH
Confidence 77777777766655554432 13335556677777777777777776654222 344556666666666
Q ss_pred HHHH
Q 036165 538 EIAA 541 (566)
Q Consensus 538 ~~~~ 541 (566)
.+..
T Consensus 790 ad~A 793 (829)
T KOG2280|consen 790 ADLA 793 (829)
T ss_pred HHHH
Confidence 5443
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.0011 Score=46.30 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=33.0
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGA 523 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ 523 (566)
..|++++|+++|+++... .+-+...+..++.+|.+.|++++|.++++++. ..|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456666666666666554 22245555566666666666666666666655 3355333333
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.25 E-value=0.069 Score=48.24 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMSTE-P----DLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
.+...|.+.|.+..|..-++.+..+ | .......+..+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5667788889998888888777622 2 3556677778899999999988877654
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.11 Score=48.88 Aligned_cols=53 Identities=15% Similarity=0.009 Sum_probs=29.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHHC
Q 036165 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS--GLVHNFCNDEAFDTFKEMLSQ 344 (566)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~ 344 (566)
++.-.|+.++|..+-..+++.. ....+...++ ++--.++.+.|...|++.+..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc
Confidence 3445677777777666665542 1122222332 233456677777777776654
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.21 E-value=0.029 Score=49.24 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=19.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMSTE-PD----LFVWGALLGACKNHGNIE 535 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~ 535 (566)
+.+.|.+.|.+..|..-++.+... |+ ...+..++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 344455555555555555554411 22 123344445555555554
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.20 E-value=0.017 Score=45.19 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=47.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhc
Q 036165 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTS--ATISSILPACASAANMRRGKEIHGCAIVMGVEG--DLHVRSALVDMYAKC 398 (566)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 398 (566)
.++-..|+.++|+.+|++....|...+. ..+..+.+.+...|++++|..+++......+.. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444555666666666666555543331 233344455555555555555555554432210 112222233455556
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHH
Q 036165 399 GFISEARTLFDKMSERNTVTWNSMI 423 (566)
Q Consensus 399 g~~~~A~~~~~~~~~~~~~~~~~l~ 423 (566)
|+.++|...+-....++...|.--|
T Consensus 89 gr~~eAl~~~l~~la~~~~~y~ra~ 113 (120)
T PF12688_consen 89 GRPKEALEWLLEALAETLPRYRRAI 113 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655443333333333333
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.19 E-value=0.0019 Score=44.58 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..+.+.|++++|.+.|+++.+..+.+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544444444555555555555555555555555543
No 202
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.18 E-value=0.011 Score=59.47 Aligned_cols=137 Identities=7% Similarity=-0.043 Sum_probs=84.1
Q ss_pred CCcHhHHHHHHHHHHhc-----CCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhc--------CChHHHHHHHHHhhhc
Q 036165 382 EGDLHVRSALVDMYAKC-----GFISEARTLFDKMSE--RN-TVTWNSMIFGCANH--------GYCDEAIELFNQMEER 445 (566)
Q Consensus 382 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~ 445 (566)
+.+...|..++.+.... ++.+.|..+|++..+ |+ ...|..+..++... ++...+.+..++....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 34455555555543321 225566666666654 33 22333332222211 1123344444443332
Q ss_pred --CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHH
Q 036165 446 --KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVW 521 (566)
Q Consensus 446 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 521 (566)
.+.+...|..+.-.....|++++|...++++.+. .|+...|..+..++...|+.++|.+.++++. ..|...+|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3445567777766667789999999999999865 5788888899999999999999999998876 55665554
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.18 E-value=0.23 Score=47.38 Aligned_cols=423 Identities=11% Similarity=0.090 Sum_probs=230.3
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchH------HHHHHHHHHhhcCChHHHHHHhccCCCCC-cchHHHHHHHH--HhcCC
Q 036165 89 IRDRALQSGKILHAQLIVSGLARLTQ------IATKLITFYTECQNIHHARMLFDEIPKTN-IHRWIALTGAY--ARRGY 159 (566)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~ 159 (566)
-+++++.++..+|.++.+..- .++. .-+.++++|-. .+++.....+....+.. -..|-.+..++ -+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 367899999999999877642 2222 23566666654 34444444444443321 23455555443 47889
Q ss_pred hHHHHHHHHHhHHC--CCCC------------CcchHHHHHHHHcccCChhHHHHHHHHHHHcC----CCCchhHHHHHH
Q 036165 160 HQEAVTVFHEMHIQ--GLKQ------------NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS----FGTDAFVVSSLI 221 (566)
Q Consensus 160 ~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l~ 221 (566)
+++|++.+..-.+. +..| |...=+..+..+...|++.+++.+++++...= ...+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99999998877665 2222 11122445667788999999999998887653 347888999877
Q ss_pred HHHHhcCCHH---------------HHHHHHHhcCCCChhh----------HHHHHHHHHH--cCChhHHHHHHHHhhhC
Q 036165 222 DMYSKCGSVE---------------KAKKVFDEMVEKDIVA----------MNAMVSGYVQ--RGLATEALNLVEEIGTP 274 (566)
Q Consensus 222 ~~~~~~g~~~---------------~A~~~~~~~~~~~~~~----------~~~li~~~~~--~g~~~~a~~~~~~m~~~ 274 (566)
-+++++=-++ .+.-...++...+... ...++....- ..+..--+++++.-...
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 6666542221 1111112221111111 1111111111 11222223333333334
Q ss_pred CCCccHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036165 275 RVKPNVV-TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349 (566)
Q Consensus 275 ~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 349 (566)
-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -..+|..++....+.++..+|-..+.-+..- .|+
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCc
Confidence 4455543 22333333333 5555555555443332222 3557888888899999999998888776543 343
Q ss_pred HHHHHH-------HHHHHH-ccCchHHH---HHHHHHHHHhCCCCcHhHHHHH---HHHHHhcCC-HHHHHHHHHhcCC-
Q 036165 350 SATISS-------ILPACA-SAANMRRG---KEIHGCAIVMGVEGDLHVRSAL---VDMYAKCGF-ISEARTLFDKMSE- 413 (566)
Q Consensus 350 ~~~~~~-------ll~~~~-~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~-~~~A~~~~~~~~~- 413 (566)
...-.. +-...+ ...++... ..+|+.+...++.. -.....| +.-+-+.|. -++|.++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 332211 112222 22222222 33444444444332 1122222 233445555 8888999888775
Q ss_pred --CChhHHHHHH----HHHHh---cCChHHHHHHHHHhhhc-CCC----CHHHHHHHHHH--HhccCChHHHHHHHHHhH
Q 036165 414 --RNTVTWNSMI----FGCAN---HGYCDEAIELFNQMEER-KKL----DHLSFTAVLTA--CCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 414 --~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~~~~~-~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 477 (566)
-|...-|.+. .+|.+ .....+-.++-.-+.+. .+| +...-|.|..| +...|++.++.-.-.-+.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3443333322 23332 12233333333333333 222 23344445443 456889988876555554
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 523 (566)
.+.|++.+|..++-++....++++|+.++...+ |+..++++
T Consensus 490 ---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 490 ---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred ---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 578999999999999999999999999999985 56666654
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.013 Score=45.89 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCC--cchHHHHHHHHcccCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQN--IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG--TDAFVVSSLIDMYS 225 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~ 225 (566)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|+.++|..+++........ .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44555666777777777777776664433 224445555566666777777776666654211 01222222333455
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHH
Q 036165 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254 (566)
Q Consensus 226 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 254 (566)
..|+.++|.+.+-....++...|.--|..
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665554433333333333333
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.13 E-value=0.0039 Score=53.21 Aligned_cols=87 Identities=9% Similarity=0.155 Sum_probs=58.8
Q ss_pred CcchHHHHHHHHHh-----cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHccc----------------CChhHHHHH
Q 036165 143 NIHRWIALTGAYAR-----RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL----------------SDIGTGEKI 201 (566)
Q Consensus 143 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~~~ 201 (566)
|-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+. .+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 355666666677777777777777777777776432 133567888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 202 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
+++|...|+-||..++..+++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888866554
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.17 Score=44.60 Aligned_cols=135 Identities=8% Similarity=0.000 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH-----H
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC-----M 492 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----l 492 (566)
-++++..+.-.|.+.-....+++.++. .+.++.....|++.-.+.||.+.|...|++..+. .-..+....+. .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence 344455555566666666666666665 3445566666666666777777777777655443 11222222222 2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 493 VDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
...|.-++++.+|...+.+.+. ..++...|.-.-+..-.|+..+|++.++.+.+..|.....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 2334445566666666666652 2233444443334444566667777777777666654433
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.11 E-value=0.26 Score=49.03 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH---------
Q 036165 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVT--------- 418 (566)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--------- 418 (566)
..++..+...+.+...+..|-++|..+-+. ..++++....++|.+|..+-++..+ +++..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 344555555556666777777777766432 3567788888999999998888876 33321
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHhhh
Q 036165 419 --WNSMIFGCANHGYCDEAIELFNQMEE 444 (566)
Q Consensus 419 --~~~l~~~~~~~~~~~~A~~~~~~~~~ 444 (566)
|...-.+|.+.|+..+|..+++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 22223455566666666666666544
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.047 Score=54.04 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH------
Q 036165 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF------ 519 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~------ 519 (566)
..+..+...+..-+.+...+.-|.++|..|-+ ...+++.+...++|.+|..+-++.+ ..||+.
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQW 813 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHH
Confidence 33445555555556666777788888887743 2457888889999999999988877 334421
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 520 -----VWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 520 -----~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
-+..--.+|.+.|+..+|.++++++-
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12233367889999999999998875
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0012 Score=47.70 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS-----TE---PD-LFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
.+++.+..+|.+.|++++|++.+++.. .. |+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345666666666677666666666554 11 22 445666777777777777777777777653
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.024 Score=53.04 Aligned_cols=270 Identities=15% Similarity=0.021 Sum_probs=172.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 363 (566)
.-....+.+..++..|+..+...++.... +..-|..-...+...|++++|.--.++-++.. .-........-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhh
Confidence 33456777777888888888888887433 46666666677778888888877766654431 11223455556666666
Q ss_pred CchHHHHHHHHHHHH---h-------------CCCCcHhHHHHH-HHHHHhcCCHHHHHHHHHhcCCCChh-HHHHHHH-
Q 036165 364 ANMRRGKEIHGCAIV---M-------------GVEGDLHVRSAL-VDMYAKCGFISEARTLFDKMSERNTV-TWNSMIF- 424 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~---~-------------~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~- 424 (566)
++..+|.+.++.-.. . .-+|.-..+..+ ..++.-.|+.++|..+--.+.+-+.. .+...++
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg 210 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcc
Confidence 777777766652210 0 001111222222 34556678888888877766653332 3333343
Q ss_pred -HHHhcCChHHHHHHHHHhhhcCCCCHHH---HHHH----------HHHHhccCChHHHHHHHHHhHHhcCCCCC-----
Q 036165 425 -GCANHGYCDEAIELFNQMEERKKLDHLS---FTAV----------LTACCHVGLVELGQRLFNMMQEKYKIMPR----- 485 (566)
Q Consensus 425 -~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----- 485 (566)
++-..++.+.|...|++.... .|+... -... ..-..+.|.+..|.+.+.+.+ ++.|+
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~l-dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~n 286 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRL-DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTN 286 (486)
T ss_pred cccccccchHHHHHHHhhhhcc-ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchh
Confidence 344577889999999988775 333322 2222 233457899999999999988 44554
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL---GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
...|.....+..+.|+.++|+.-.+... +-|..-..+++ .++...+++++|.+-++++.+..-+ .....+|...
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 4566677778889999999999999887 44444333333 4567889999999999999987654 4555555443
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.005 Score=57.24 Aligned_cols=278 Identities=14% Similarity=0.018 Sum_probs=131.3
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCCc----chHHHHHHHHcccCChhHHHHHHHHHH--H--cCCC-CchhHHHHHHH
Q 036165 152 GAYARRGYHQEAVTVFHEMHIQGLKQNI----FVIPSVLKACGHLSDIGTGEKIHSLVL--K--HSFG-TDAFVVSSLID 222 (566)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~l~~ 222 (566)
.-+++.|+.+..+.+|+...+.|.. |. ..|..+..+|.-.+++++|.+++..=+ . .|-. -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888887633 32 245555556666667777777654311 1 1100 01112223444
Q ss_pred HHHhcCCHHHHHHHHHhcC-------CC--ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcC
Q 036165 223 MYSKCGSVEKAKKVFDEMV-------EK--DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293 (566)
Q Consensus 223 ~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 293 (566)
.+--.|.+++|.-...+-. ++ ....+..+...|...|+.-.... -.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 4444556665554332211 00 11223334444444432110000 000000011000
Q ss_pred CCHHHHHHHHHHHHH----cCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHcc
Q 036165 294 GDQVMVSKLFQLMRA----KGV-EPDVVSWTSVISGLVHNFCNDEAFDTFKEML----SQGFCP-TSATISSILPACASA 363 (566)
Q Consensus 294 ~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~-~~~~~~~ll~~~~~~ 363 (566)
..++.|.++|.+-.+ .|- -.--..|..|...|.-.|+++.|+..-+.-+ +-|-+. ....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 011222222222111 110 0012234444444444556666655433322 112111 123445555666666
Q ss_pred CchHHHHHHHHHHH----HhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHHHHHhc
Q 036165 364 ANMRRGKEIHGCAI----VMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSE---------RNTVTWNSMIFGCANH 429 (566)
Q Consensus 364 ~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~ 429 (566)
|+++.|.+.++... +.|-. ......-+|.+.|.-..++++|+..+.+-.. ....++.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 66666666655432 22211 1234455677777777777888777765442 2345667778888888
Q ss_pred CChHHHHHHHHHhhhc
Q 036165 430 GYCDEAIELFNQMEER 445 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~ 445 (566)
|..++|+...+.-.+.
T Consensus 329 g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8888887776665543
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.037 Score=49.95 Aligned_cols=97 Identities=9% Similarity=0.016 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc---CChHHHHHHHHHhHHhcCCCCChhHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV---GLVELGQRLFNMMQEKYKIMPRTEHYAC 491 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 491 (566)
|...|-.|...|...|+...|...|.+..+..++|+..+..+..++... .+-.++..+|+++... -+-|+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHH
Confidence 4556666666666666666666666666666555665555555544322 2344556666666642 2234445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|...+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 5566666666666666666665
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.55 Score=47.83 Aligned_cols=327 Identities=12% Similarity=0.111 Sum_probs=186.8
Q ss_pred HcCCCCchhHH-----HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--hhHHHHHHHHhhhCCC
Q 036165 207 KHSFGTDAFVV-----SSLIDMYSKCGSVEKAKKVFDEMVEKD---IVAMNAMVSGYVQRGL--ATEALNLVEEIGTPRV 276 (566)
Q Consensus 207 ~~g~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 276 (566)
..|++.+..-| ..+++-+...+.+..|.++-.-+..|. ...|......+.+..+ -+++++-+++=.+...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 34555555444 346777888899999999999886664 5667777777777643 2344444443333222
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-C---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036165 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE-P---DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352 (566)
Q Consensus 277 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 352 (566)
-+..+|..+.+.....|+.+.|..+++.=...+.. | +..-+..-+.-....|+.+....++-++..+- +...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 34556778888888899999999887652222111 0 22233444555666777777777666665431 1111
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH--hc-----CCCChhHHHHHHHH
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD--KM-----SERNTVTWNSMIFG 425 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~l~~~ 425 (566)
+. ....+...|..++.+..+..-. ..+-+.|....+. .+...|. .. .++-..........
T Consensus 581 l~------~~l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 581 LF------MTLRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HH------HHHHhchhhhHHHHHHHHhhch------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 11 1122334455555555442211 1122223222222 2222221 10 01111122223333
Q ss_pred HHhcCC----------hHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 426 CANHGY----------CDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 426 ~~~~~~----------~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
+.+... ..+-+++.+.+... ..-...+.+--+.-+...|+-.+|.++-.+.+ -||-..|-.-+
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKL 722 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHH
Confidence 433322 22223334444443 22333456666677788899999988877664 46888888889
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
.++...+++++-+++-+... ++.-|.=...+|.+.|+.++|.+++-+.-.+. +-...|...+
T Consensus 723 ~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~-ekv~ay~~~~ 784 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ-EKVKAYLRVG 784 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH-HHHHHHHHhc
Confidence 99999999999999888765 24567778889999999999999987765433 3344444433
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.94 E-value=0.02 Score=47.30 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCChhHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE----KYKIMPRTEHY 489 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 489 (566)
....++..+...|++++|..+.+++....|.+...|..++.++...|+...|.++|+.+.. ..|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4455666677888888888888888888888888888888888888888888888877643 34888877653
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.012 Score=54.97 Aligned_cols=125 Identities=9% Similarity=-0.105 Sum_probs=71.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCC-----CC----------HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 422 MIFGCANHGYCDEAIELFNQMEERKK-----LD----------HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
-...|.+.|++..|...|++...... ++ ..+++.+.-++.+.+++..|++..++..+. -++|.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCch
Confidence 35678888999999999888776521 11 123555556666666666666666666653 23344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH-HHHHHHHHHHhcCCH-HHHHHHHHHHhhhC
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF-VWGALLGACKNHGNI-ELAEIAAKHLSELE 548 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 548 (566)
...-.=..+|...|+++.|+..|+++. ..|+.. +-+.|+..-.+..+. +...++|..|+..-
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444455566666666666666666665 344333 333333333333322 33355666666533
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.25 Score=43.55 Aligned_cols=126 Identities=12% Similarity=0.074 Sum_probs=71.3
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHH-----HH
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----RNTVTWNS-----MI 423 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-----l~ 423 (566)
...++..+...|.+.-....++..++...+.++.....|+.+-.+.|+.+.|...|++..+ -|....+. +.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444555555566666666666666665555666666677777777777777777765442 11111221 22
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..|.-.+++..|...+.++....+.|+...|.-.-+..-.|+..+|.+.++.|++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344455566666666666655555555555555555556666666666666664
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.017 Score=52.52 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVD 494 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 494 (566)
|...+..+.+.|++++|...|+.+.+..|.+ ...+..+..++...|++++|...|+.+.+.+...| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344566666666666666653333 23555666666666777777777766665422111 1334444555
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
++...|+.++|..+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666677777776666655
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.41 Score=44.85 Aligned_cols=212 Identities=13% Similarity=0.075 Sum_probs=112.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHH--HHHHHHH--HH-ccC
Q 036165 292 KSGDQVMVSKLFQLMRAKGVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSAT--ISSILPA--CA-SAA 364 (566)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~ll~~--~~-~~~ 364 (566)
+.|+.+.|...-+..-.. .| -...+...+...+..|+++.|+++++.-++.. +.++..- -..++.+ .. -..
T Consensus 166 r~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 445555555555444332 22 23345555666666666666666666554332 2222211 1111111 11 112
Q ss_pred chHHHHHHHHHHHHhCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036165 365 NMRRGKEIHGCAIVMGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
+...|+..-.+..+. .|+. ..-..-..++.+.|+..++-.+++.+=+ |....+. +..+.+.|+ .+..-+++
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHH
Confidence 233444444444332 2331 1223345677778888888777776654 3333222 222334443 34444444
Q ss_pred hhhc---CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhcCC
Q 036165 442 MEER---KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA-GRLAEAYEMIKTMST 514 (566)
Q Consensus 442 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 514 (566)
.... .+.+..+...+..+....|++..|..--+... ...|....|..|.+.-... |+-.++..++-+...
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4333 34455677777778888888888877766665 3467777777777765544 888888888877663
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.74 E-value=0.21 Score=43.89 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 505 (566)
+.+-|.+.|.+..|..-++.+++.+.-.+. ......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344555666666666666666554211111 12334555666666655533
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.022 Score=50.66 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----CHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKI-MPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-EP----DLFVWGALL 525 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~ 525 (566)
.|+.-+. +.+.|++.+|...|...++.|.- .-.+..+-.|.+++...|++++|..+|..+.. -| -+..+.-|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555554 34567788888888888875211 11134455688888888888888888877661 12 356777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.+..+.|+.++|...++++.+..|+.+.+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888888899999999998888888776543
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.62 E-value=0.039 Score=45.23 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=46.7
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 507 (566)
+.|++++|..+|+-+....+-|..-+..|..++-..+++++|+..|...... + .-|+...-....+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 4555555555555555444445555555555555566666666665555432 2 1233334445566666666666666
Q ss_pred HHHhcCCCC
Q 036165 508 MIKTMSTEP 516 (566)
Q Consensus 508 ~~~~~~~~p 516 (566)
.|+.+..+|
T Consensus 127 ~f~~a~~~~ 135 (165)
T PRK15331 127 CFELVNERT 135 (165)
T ss_pred HHHHHHhCc
Confidence 665555433
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.58 E-value=0.14 Score=48.70 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHhccCCCC-------CcchHHHHHHHHHh---cCChHHHHHHHHHhHHCCCCCCcchHH
Q 036165 114 QIATKLITFYTECQNIHHARMLFDEIPKT-------NIHRWIALTGAYAR---RGYHQEAVTVFHEMHIQGLKQNIFVIP 183 (566)
Q Consensus 114 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~ 183 (566)
.+...++-.|....+++...++++.+... ....-....-++.+ .|+.++|++++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33334555577778888888888877663 11222234455566 788888888888866666677777777
Q ss_pred HHHHHH
Q 036165 184 SVLKAC 189 (566)
Q Consensus 184 ~ll~~~ 189 (566)
.+.+.+
T Consensus 222 L~GRIy 227 (374)
T PF13281_consen 222 LLGRIY 227 (374)
T ss_pred HHHHHH
Confidence 777665
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.55 E-value=0.0029 Score=36.76 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=24.5
Q ss_pred HHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 541 AKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 541 ~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++++++++|+++.++..||.+|..+|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g 27 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG 27 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc
Confidence 78999999999999999999999887
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.52 E-value=0.02 Score=40.53 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=34.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
..|.+.+++++|.+.++++....|.+...+.....++...|++++|.+.++.+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666655555566666666666666666666666666643
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.29 Score=44.23 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 476 (566)
..|+..+|..+|+......+.+...-..++.++...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3444444444444444443333344444444444444444444444443
No 226
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.37 E-value=0.012 Score=34.18 Aligned_cols=33 Identities=30% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788899999999999999999999999986
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.34 E-value=0.058 Score=42.73 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
..|+..+..+++.+++..|++..|.++.+...+.|+++.+...|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5678888888888888888888888888888888888878888887774
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.34 E-value=0.95 Score=42.65 Aligned_cols=109 Identities=8% Similarity=0.074 Sum_probs=72.6
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 036165 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (566)
+.+..+.-+...|+...|.++-.+. .+ |+...|-..+.+|++.++|++-..+... +..+..|...+.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 3444455566667766666654443 23 5777777888888888888877776543 4566778888888888888
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036165 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
..+|..+..++. +..-+..|.+.|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888887777622 24445566777777777665433
No 229
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.27 E-value=0.011 Score=34.42 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
.+|..+..+|...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999999974
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=96.27 E-value=0.056 Score=44.33 Aligned_cols=98 Identities=8% Similarity=-0.034 Sum_probs=78.0
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 532 (566)
....-+...|++++|..+|.-+.-. + .-+..-|..|..++-..|++++|...|.... ...|+...-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3444567899999999999988764 2 3356678889999999999999999998755 3456666777889999999
Q ss_pred CHHHHHHHHHHHhhhCCCCchHH
Q 036165 533 NIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+.+.|+..|+.+++ .|.+....
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHHHH
Confidence 99999999999998 56665543
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=0.047 Score=48.65 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMV 493 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~ 493 (566)
.|+.-+..+ +.|++.+|...|...++..+.+ ...+--|..++...|++++|..+|..+.+.++-.|.. +.+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466555544 5566888888888888774433 3456677888888888888888888888765555543 6777788
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+..+.|+.++|..+|+++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 88888888888888888877
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.21 E-value=0.03 Score=40.25 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
+..+..+|...|++++|++.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444443
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.20 E-value=0.23 Score=40.95 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH-----HhCCCCcHhHH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI-----VMGVEGDLHVR 388 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 388 (566)
...++..+...|++++|...++.+.... +.+...+..++.++...|+...|..+++.+. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556666777777777777777653 4566677777777777777777777766653 24777766553
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.10 E-value=0.45 Score=38.21 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 423 IFGCANHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
.....+.|++++|.+.|+.+....+. ....-..++.++.+.|++++|...+++.++.+--.|+. -|...+.++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 33445677788888888887777333 34456677777888888888888888877653333332 244444444432
Q ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 500 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
...+.. +..+. ..=...+....|...|+++++..|++.-+
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 222211 11111 00111223458888888888888887543
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.05 E-value=0.99 Score=40.11 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=85.4
Q ss_pred HhcCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCHHHHHHHHHHHhc------
Q 036165 396 AKCGFISEARTLFDKMSE--R----NTVTWNSMIFGCANHGYCDEAIELFNQMEERKK-LDHLSFTAVLTACCH------ 462 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~------ 462 (566)
.+.|++++|.+.|+.+.. | ...+--.++.++-+.+++++|+...++.....+ ....-|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 345666666666666653 1 112233344455566666666666666666521 112223333333332
Q ss_pred -cCChHH---HHHHHHHhHHhc---CCCCChh------------HHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----CH
Q 036165 463 -VGLVEL---GQRLFNMMQEKY---KIMPRTE------------HYACMVDLLGRAGRLAEAYEMIKTMSTE-P----DL 518 (566)
Q Consensus 463 -~g~~~~---a~~~~~~~~~~~---~~~p~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p----~~ 518 (566)
..|... |..-|+.++.++ ...||.. .=..+.+.|.+.|.+..|..-+++|... | ..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 122222 333333333331 0111111 0124567788999999998888888732 2 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
..+-.+..+|...|-.++|...-+-+....|+++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4556666889999999999887766666666664
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.04 E-value=0.026 Score=54.17 Aligned_cols=99 Identities=9% Similarity=-0.050 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT----EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 521 (566)
.+.+...++.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|+.++|.+.++++.... ...|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~f 146 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLKF 146 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chhH
Confidence 3556678999999999999999999999998854 5664 358899999999999999999999987321 1122
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHhhhC
Q 036165 522 GALLG--ACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 522 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
..+.. .+....+.++..++++.+.+-+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 21111 1112223346666666666543
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.02 E-value=1.3 Score=43.31 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHH--HHHHHHHHHh
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFV--WGALLGACKN 530 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~--~~~l~~~~~~ 530 (566)
.+..++-+.|+.++|++.++++.+.+.......+...|+.++...+.+.++..++.+... -|...+ |+..+-.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 344455566666666666666654311111223445566666666666666666665541 133222 3332222222
Q ss_pred cCC---------------HHHHHHHHHHHhhhCCCCchHH
Q 036165 531 HGN---------------IELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 531 ~g~---------------~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
.|+ -..|.+++.++.+.||..|.+.
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 222 2347788999999999888764
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.98 E-value=1.6 Score=41.89 Aligned_cols=408 Identities=13% Similarity=0.109 Sum_probs=223.9
Q ss_pred CCchHHHHHHHHHHhhcCChHHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHH
Q 036165 110 ARLTQIATKLITFYTECQNIHHARMLFDEIPKTN---IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186 (566)
Q Consensus 110 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 186 (566)
+.|...|=.|++.|...|..++.+++++++..|- ..+|..-+++-...+++.....+|.+...... +...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 3577889999999999999999999999998864 45799999988888999999999999988644 455555555
Q ss_pred HHHcccCCh------hHHHHHHHHHHH-cCCCCc-hhHHHHHHHHH---HhcC------CHHHHHHHHHhcCCC---Ch-
Q 036165 187 KACGHLSDI------GTGEKIHSLVLK-HSFGTD-AFVVSSLIDMY---SKCG------SVEKAKKVFDEMVEK---DI- 245 (566)
Q Consensus 187 ~~~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~---~~~g------~~~~A~~~~~~~~~~---~~- 245 (566)
....+.+.. ..-.+.++..+. .++.|- ...|+..+... -..| ++|.....+.++... +.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 544333321 122334444443 344443 33455444332 2223 455566667666332 11
Q ss_pred hhHH------HHHHHHHH---cC----ChhHHHHHHHHhhh--CCCC----ccHHHHHHHHH-----------HHhcC--
Q 036165 246 VAMN------AMVSGYVQ---RG----LATEALNLVEEIGT--PRVK----PNVVTWNTLIS-----------GFSKS-- 293 (566)
Q Consensus 246 ~~~~------~li~~~~~---~g----~~~~a~~~~~~m~~--~~~~----p~~~~~~~ll~-----------~~~~~-- 293 (566)
..|+ .=+.-... .| -+-.|.+.+++... .|.. .+..+++.+-+ --...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 1121 11111110 01 13345555555432 2221 12233332111 10000
Q ss_pred ---CC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCchH
Q 036165 294 ---GD--QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP-ACASAANMR 367 (566)
Q Consensus 294 ---~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~ 367 (566)
|+ .+...-++++.... +.-....|----.-+...++-+.|+.+.+.-.. ..|+ ++..+. .+.-.++.+
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~lse~yel~nd~e 350 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMFLSEYYELVNDEE 350 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hheeHHHHHhhcccHH
Confidence 01 11111222222221 112333343333344455666666665544321 1222 111111 111111111
Q ss_pred HHHHHHHHH-----------------------------HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 036165 368 RGKEIHGCA-----------------------------IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----- 413 (566)
Q Consensus 368 ~a~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 413 (566)
.....|+.+ .-.....-..+|..+++...+..-++.|+.+|-+..+
T Consensus 351 ~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~ 430 (660)
T COG5107 351 AVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG 430 (660)
T ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC
Confidence 111111111 0000111244667788888888889999999988775
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHH
Q 036165 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEHYAC 491 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 491 (566)
+++..+++++.-++. |+...|..+|+--....+.+..-.+-.+.-+...++-+.|..+|+..+++ +..+ ..+|..
T Consensus 431 h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~k 507 (660)
T COG5107 431 HHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER--LEKTQLKRIYDK 507 (660)
T ss_pred cceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHH
Confidence 567788888887654 67888999998777666655555566677778888989999999977664 3333 467888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGAC 528 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 528 (566)
+++-=..-|++..+..+=+++. .-|...+......-|
T Consensus 508 mi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry 545 (660)
T COG5107 508 MIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHH
Confidence 8887788888888877766665 224443333333333
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.93 E-value=0.39 Score=46.47 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=34.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RNT----VTWNSMIFGCANHGYCDEAIELFNQMEE 444 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 444 (566)
+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666666666655443 332 2355555666666666666666665554
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.87 E-value=0.64 Score=37.91 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCCh
Q 036165 81 YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160 (566)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 160 (566)
...++..+...+.+......++.++..+. .++..++.++..|++.++ ......++. ..+......+++.|.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 45677777777888899999999888873 678889999999987643 444444442 23344455577777777777
Q ss_pred HHHHHHHHHh
Q 036165 161 QEAVTVFHEM 170 (566)
Q Consensus 161 ~~A~~~~~~m 170 (566)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 7777777665
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.15 Score=47.98 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC------------------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHH
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE------------------RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 451 (566)
.-.+.|.+.|++..|..-|++..+ .-..++..+..+|.+.+++..|++...+.....++|..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 346778999999999999887542 12235777888899999999999999999999999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCCHHH-HHHHHHhcC
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH-YACMVDLLGRAGRLAE-AYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~-A~~~~~~~~ 513 (566)
....-..++...|+++.|+..|+++++. .|+... -+-|+.+-.+.....+ ..++|..|.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999964 666544 4445555555444443 367777776
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.86 E-value=0.63 Score=36.41 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
+|++......+-.+. .+.......+.....+|+-+.-.+++..+.+...+++.....+..+|.+.|+..++.+++.++.
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 444444444443332 2233455567777888888888888888876677788888888888888888888888888888
Q ss_pred HhcCCC
Q 036165 478 EKYKIM 483 (566)
Q Consensus 478 ~~~~~~ 483 (566)
++ |++
T Consensus 148 ek-G~k 152 (161)
T PF09205_consen 148 EK-GLK 152 (161)
T ss_dssp HT-T-H
T ss_pred Hh-chH
Confidence 77 653
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.85 E-value=0.32 Score=48.05 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=105.3
Q ss_pred HHHHHhcCChHHHHHHHH--HhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 036165 151 TGAYARRGYHQEAVTVFH--EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 228 (566)
.....-.|+++++.++.+ ++.. .+ +..-.+.++..+-+.|..+.|.++-.. .. .-.+...+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcC
Confidence 344556788888777765 2221 12 244577888888888888888877432 21 2345567889
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036165 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308 (566)
Q Consensus 229 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 308 (566)
+++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+....
T Consensus 333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999998877765 566899999999999999999999998764 56677778888998888888877776
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 036165 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340 (566)
Q Consensus 309 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 340 (566)
.| -++....++.-.|+.++..+++.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64 255566667777888888877764
No 244
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=3 Score=43.47 Aligned_cols=215 Identities=11% Similarity=0.009 Sum_probs=131.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHH----hC------------CCCchHHHHHHHHHHhhcCChHHHHHHhccCC
Q 036165 77 SPAAYSERIEIYIRDRALQSGKILHAQLIV----SG------------LARLTQIATKLITFYTECQNIHHARMLFDEIP 140 (566)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 140 (566)
++...+.+++++...+++-.=.-+++.+.+ .+ ..........-+.++.+..-++.|..+-+.-.
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~ 361 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH 361 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 344556677777776665443333333322 22 11222334556777788888888888776543
Q ss_pred CCCc---chHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHH
Q 036165 141 KTNI---HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217 (566)
Q Consensus 141 ~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 217 (566)
-+.. ...-.-..-+.+.|++++|.+-|-+-... +.| ..++.-+........--.+++.+.+.|+. +...-
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dht 434 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHT 434 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhH
Confidence 3211 12333445566789999999888765432 222 24566666667777777888888888864 44555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChh-hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCH
Q 036165 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIV-AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296 (566)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 296 (566)
..|+.+|.+.++.++-.++.+...+.... -....+..+.+.+-.++|..+-..... .......+ +-..+++
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny 506 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNY 506 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCH
Confidence 67999999999999988888877622211 245566677777777777665444322 22333333 3345778
Q ss_pred HHHHHHHHHH
Q 036165 297 VMVSKLFQLM 306 (566)
Q Consensus 297 ~~a~~~~~~~ 306 (566)
++|.+.+..+
T Consensus 507 ~eAl~yi~sl 516 (933)
T KOG2114|consen 507 EEALRYISSL 516 (933)
T ss_pred HHHHHHHhcC
Confidence 8888877665
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.76 E-value=0.089 Score=42.12 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=30.5
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 496 LGRAGRLAEAYEMIKTMSTE-----PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
..+.|++++|.+.|+.+..+ -...+-..++.+|.+.|++++|...+++.++++|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34455555555555555411 1233445555566666666666666666666655443
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.72 E-value=0.9 Score=37.02 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHH
Q 036165 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265 (566)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (566)
+..+...+.......+++.+.+.+ ..+....+.++..|++.+ .++..+.++. ..+......+++.|.+.+-++++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHH
Confidence 333333344444444444444443 233444444444444432 2222333331 112222333444444445555555
Q ss_pred HHHHHh
Q 036165 266 NLVEEI 271 (566)
Q Consensus 266 ~~~~~m 271 (566)
-++.++
T Consensus 90 ~l~~k~ 95 (140)
T smart00299 90 ELYKKD 95 (140)
T ss_pred HHHHhh
Confidence 554443
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.71 E-value=1.4 Score=39.21 Aligned_cols=220 Identities=18% Similarity=0.073 Sum_probs=162.0
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHh-CCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAANMRRGKEIHGCAIVM-GVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
.+....+...+.......... ...........+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456667777777776553221 3567778888888999999998888887763 33345666777778888888899999
Q ss_pred HHHHhcCC--CCh-hHHHHHHH-HHHhcCChHHHHHHHHHhhhcCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 406 TLFDKMSE--RNT-VTWNSMIF-GCANHGYCDEAIELFNQMEERKKL----DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 406 ~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
..+..... ++. ........ .+...|+++.|...+++... ..| ....+......+...++++.+...+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 99988775 222 23333334 68899999999999999866 333 33445555555778899999999999998
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 478 EKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 478 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
.. .+. ....+..+...+...+++++|...+.... ..|+ ...+..+...+...|+.+++...+.+..+..|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 64 233 36778888899999999999999998877 3344 455666666666777899999999999998886
No 248
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.71 E-value=3.5 Score=44.73 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=23.0
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.|..-+...+++-+|-++..+...+ ..--+..|++...|++|.++....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 3444445555555555555444322 122334455555555555555443
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.70 E-value=0.63 Score=36.41 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=31.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
..+..+.++|+-+.-.+++.++...+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455556666666666666654322 45555555666666666666666666666655553
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.67 E-value=1.5 Score=39.10 Aligned_cols=217 Identities=16% Similarity=0.078 Sum_probs=156.1
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCchHHHH
Q 036165 293 SGDQVMVSKLFQLMRAKGVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGK 370 (566)
Q Consensus 293 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~ 370 (566)
.+....+...+......... .....+......+...+....+...+...... ........+..........+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554322 13567777888889999999999999888753 33455566777777888888899999
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHH-HHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 036165 371 EIHGCAIVMGVEGDLHVRSALVD-MYAKCGFISEARTLFDKMSERN------TVTWNSMIFGCANHGYCDEAIELFNQME 443 (566)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 443 (566)
..+.........+. ........ .+...|+++.|...+.+....+ ...+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 99998887654431 22222333 7889999999999998875421 2233333444667889999999999999
Q ss_pred hcCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 444 ERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 444 ~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...+. ....+..+...+...++++.+...+...... .|+ ...+..+...+...|..+++...+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 87666 5788888889999999999999999998864 343 4455555555667778999998888776
No 251
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.67 E-value=0.2 Score=39.76 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=24.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHH
Q 036165 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA-KGVEPDVVSWTSVIS 323 (566)
Q Consensus 276 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 323 (566)
..|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345555555555555555555555555555433 334444445554443
No 252
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.56 E-value=0.11 Score=46.26 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=78.4
Q ss_pred hHHHHHHhccCC--CCCcchHHHHHHHHHhc-----CChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccC--------
Q 036165 129 IHHARMLFDEIP--KTNIHRWIALTGAYARR-----GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS-------- 193 (566)
Q Consensus 129 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------- 193 (566)
+-..++.|+..+ ++|-.+|...+..+... +..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344566677666 46777888888777543 556777778889999999999999999999875432
Q ss_pred --------ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 194 --------DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 194 --------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
.-+-+.+++++|...|+.||..+-..|++++.+.+-.
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2245788899999999999999999999998877753
No 253
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.48 E-value=3.1 Score=41.64 Aligned_cols=184 Identities=12% Similarity=-0.018 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036165 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358 (566)
Q Consensus 279 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 358 (566)
+..+|..-+.--.+.|+.+.+.-+++...-. +..=...|--.++-....|+.+-|..++....+-.++-.+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4566777777777788888887777776432 111223343444444445777777777666555443333333322333
Q ss_pred HHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH---HHHHhcCC--CChhHHHHHHH-----HHHh
Q 036165 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR---TLFDKMSE--RNTVTWNSMIF-----GCAN 428 (566)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~l~~-----~~~~ 428 (566)
.+-..|+++.|..+++.+...- +.-..+-..-+....+.|+.+.+. .++....+ .+......+.- .+.-
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 3445678888888888887654 222333334456666777777777 44443332 22222222222 2233
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
.++.+.|..++.++.+..+++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 577888888888888888888888888888665544
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.44 E-value=1 Score=41.85 Aligned_cols=153 Identities=13% Similarity=0.038 Sum_probs=66.5
Q ss_pred HHHcCChhHHHHHHHHhhhC--CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCC---ChhhHHHHHHHHHh
Q 036165 255 YVQRGLATEALNLVEEIGTP--RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK--GVEP---DVVSWTSVISGLVH 327 (566)
Q Consensus 255 ~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~li~~~~~ 327 (566)
+..+.+.++|+..+.+-..+ ...--..+|..+..+.++.|.+++++..--..++. .... -...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777766665432 11112345555666666666666655433222211 0011 11223333333333
Q ss_pred cCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-----CCcHhHHHHHHHHHHhc
Q 036165 328 NFCNDEAFDTFKEMLSQ-GFCP---TSATISSILPACASAANMRRGKEIHGCAIVMGV-----EGDLHVRSALVDMYAKC 398 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 398 (566)
..++.+++.+-+.-... |..| .-....++..++...+.++++.+.|+.+.+.-. .....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33444444433332221 1111 112223344455555556666555555544211 11234455555555555
Q ss_pred CCHHHHHHH
Q 036165 399 GFISEARTL 407 (566)
Q Consensus 399 g~~~~A~~~ 407 (566)
.++++|.-+
T Consensus 176 ~D~~Kal~f 184 (518)
T KOG1941|consen 176 KDYEKALFF 184 (518)
T ss_pred HhhhHHhhh
Confidence 555555443
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.42 E-value=0.16 Score=45.17 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHHhcC--CCChhhHHHHHHHHHHc-----CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 036165 233 AKKVFDEMV--EKDIVAMNAMVSGYVQR-----GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 233 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 305 (566)
.++.|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|+.|++.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf---------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF---------- 122 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------
Confidence 345566664 56777888888777653 6677788888999999999999999999887755321
Q ss_pred HHHcCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 036165 306 MRAKGVEPDVVSWTSVISGLVHN-FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365 (566)
Q Consensus 306 ~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 365 (566)
.|....- ..+..- .+-+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 123 ------iP~nvfQ----~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 ------IPQNVFQ----KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------ccHHHHH----HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 111111 1224567888888888888888888888888877765
No 256
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.40 E-value=0.064 Score=48.90 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHH
Q 036165 459 ACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHGNIE 535 (566)
Q Consensus 459 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~ 535 (566)
-|.+.|.+++|+..+..... +.| ++.++..-..+|.+..++..|..-.+.+.. +.=...|..-+.+-...|+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45566666666666665552 233 555555555666666666655555544431 111222333333344556667
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 536 LAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 536 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+|.+-++.++++.|++......++.+
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 77777777777777766555444443
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=4.1 Score=42.49 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=96.7
Q ss_pred CCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCC---CcchH
Q 036165 75 HLSPAAYSERIEIYI----RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT---NIHRW 147 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 147 (566)
..++++...+...|+ ..|++++|..-+-+.+.. --.+ .++.-|-...++.+-...++.+.+. +...-
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht 434 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT 434 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhH
Confidence 455666666666665 478998887766555432 1111 2455565556666666666666553 44556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 036165 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227 (566)
Q Consensus 148 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 227 (566)
+.|+.+|.+.++.++-.+..+.-. .|.. ..-....+..|.+.+-.++|..+-.+... +..+...++ -..
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~ 503 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDL 503 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHh
Confidence 788999999999888877776654 3322 22355677777777778887766554432 333444333 456
Q ss_pred CCHHHHHHHHHhcCCC
Q 036165 228 GSVEKAKKVFDEMVEK 243 (566)
Q Consensus 228 g~~~~A~~~~~~~~~~ 243 (566)
|++++|.+.+..++-+
T Consensus 504 ~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 504 HNYEEALRYISSLPIS 519 (933)
T ss_pred cCHHHHHHHHhcCCHH
Confidence 8899999999988543
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.26 E-value=1.1 Score=44.32 Aligned_cols=105 Identities=13% Similarity=0.200 Sum_probs=69.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
.+...++|+++.|.++.++.. +...|..|......+|+++-|++.|++..+ |..|+-.|.-.|+.+...+
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHH
Confidence 344567788888887766553 566788888888888888888888887654 5566666777777777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+.+....+ |. ++.-..++.-.|+.++..+++.+..
T Consensus 395 l~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 77666654 32 4445555556677777777776554
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.12 E-value=0.25 Score=38.42 Aligned_cols=55 Identities=24% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 425 GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 425 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
+.+..|+.+.|++.|.+.....+.+...||.-..++--.|+.++|..-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3445566666666666665555555566666666666666666666666655554
No 260
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.12 E-value=0.048 Score=31.52 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
.+|..+...|...|++++|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 357788888999999999999999999998853
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=95.11 E-value=1.4 Score=42.81 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
...+|.++-++..+..+.|+.....+..+....++++.|...|++... +.|| ...|......+.-+|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 355677777778877888888888888888888889999999999885 4555 456666666677789999999999
Q ss_pred HhcC-CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 510 KTMS-TEPDL---FVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 510 ~~~~-~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
++.. ..|.. ....-.+..|+.++ .++|++++-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 8854 45542 33333444565554 6777777765
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=2.2 Score=37.57 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC---CH---HHHHHHHH
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL---DH---LSFTAVLT 458 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~---~~~~~l~~ 458 (566)
...++.-..+|..+|.++.|-..+++.-+ .....++++|+++|++....+.. +. ..+....+
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 34556666677777777766655554321 12334566666666665544111 11 12344445
Q ss_pred HHhccCChHHHHHHHHHhHHh---cCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhc---C---CCCCHHHHHHHHHHH
Q 036165 459 ACCHVGLVELGQRLFNMMQEK---YKIMPRT-EHYACMVDLLGRAGRLAEAYEMIKTM---S---TEPDLFVWGALLGAC 528 (566)
Q Consensus 459 ~~~~~g~~~~a~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---~---~~p~~~~~~~l~~~~ 528 (566)
.+.+...+++|-..+.+-... ..--++. ..|-..|-.|.-..++..|...++.- . ...+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 566667777766655443211 0111221 23445555666677888888888773 2 123567777888777
Q ss_pred HhcCCHHHHHHHHH
Q 036165 529 KNHGNIELAEIAAK 542 (566)
Q Consensus 529 ~~~g~~~~A~~~~~ 542 (566)
..||.+++..++.
T Consensus 239 -d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 -DEGDIEEIKKVLS 251 (308)
T ss_pred -ccCCHHHHHHHHc
Confidence 5677777766654
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.03 E-value=1.1 Score=41.69 Aligned_cols=127 Identities=17% Similarity=0.078 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHH---hcCCCCChhHHH
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEER--KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQE---KYKIMPRTEHYA 490 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~p~~~~~~ 490 (566)
.+|..++...+.++++++.|+...+- ...| ...+..|...+....|+++|.-+..++.+ .+++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 33555666666777777777776654 1112 23577777777777777777665544432 223332222232
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHhcC----CCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 491 -----CMVDLLGRAGRLAEAYEMIKTMS----TEPDLFV----WGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 491 -----~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.+.-+|...|.+-+|.+..++.. ...|..+ ...+.+.|...|+.|.|..-|+++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23345566677666666666543 2233333 34566777777888777777776653
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.01 E-value=0.75 Score=46.20 Aligned_cols=83 Identities=18% Similarity=-0.028 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-CC-CCChhHHHHHHHHHHhcCCHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY-KI-MPRTEHYACMVDLLGRAGRLAEAYEM 508 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 508 (566)
+.+.|.++++.+.+..|....-...-.+.+...|+.++|++.|+.+.... .. +.....+--++..+.-.++|++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34455555555554433333333333334445555555555555433210 00 01112223344445555555555555
Q ss_pred HHhcC
Q 036165 509 IKTMS 513 (566)
Q Consensus 509 ~~~~~ 513 (566)
|.++.
T Consensus 328 f~~L~ 332 (468)
T PF10300_consen 328 FLRLL 332 (468)
T ss_pred HHHHH
Confidence 55554
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=2 Score=36.47 Aligned_cols=114 Identities=8% Similarity=0.001 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhcCCCCH-HHH--HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHH
Q 036165 434 EAIELFNQMEERKKLDH-LSF--TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT----EHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 434 ~A~~~~~~~~~~~~~~~-~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 506 (566)
+.....+++....+.+. ..+ ..+...+...|++++|+.-++..... +-|. ..--.|.......|++|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444455554422222 222 23445778899999999999887743 2222 12234567788899999999
Q ss_pred HHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 507 EMIKTMSTEPDLFVW--GALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 507 ~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
..++... .++.... ..-..++...|+.++|...|+++++.++++
T Consensus 147 ~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9998775 3433332 233367899999999999999999987544
No 266
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.92 E-value=2.4 Score=42.72 Aligned_cols=159 Identities=12% Similarity=0.094 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCcHhH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTS-----ATISSILPACAS----AANMRRGKEIHGCAIVMGVEGDLHV 387 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 387 (566)
+..+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.+.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 3444555555677777777777665432 21111 122233333332 456778888888888764 34333
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHhcCC-----C--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 036165 388 RS-ALVDMYAKCGFISEARTLFDKMSE-----R--NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459 (566)
Q Consensus 388 ~~-~l~~~~~~~g~~~~A~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 459 (566)
|. .-.+.+...|++++|++.|++... + ....+--+.-.+.-..++++|.+.|..+.+...-...+|..+..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 33 445677788999999999997653 1 223344456667788999999999999998756566666665554
Q ss_pred H-hccCCh-------HHHHHHHHHhHH
Q 036165 460 C-CHVGLV-------ELGQRLFNMMQE 478 (566)
Q Consensus 460 ~-~~~g~~-------~~a~~~~~~~~~ 478 (566)
| ...|+. ++|.++|.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4 456766 777778777643
No 267
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=1.8 Score=37.73 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=11.8
Q ss_pred HHhcCChhHHHHHHHHH
Q 036165 325 LVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m 341 (566)
+.-.+++++|.++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 44456788888887765
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.83 E-value=3.3 Score=38.41 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHhcCCHHH---HHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 036165 386 HVRSALVDMYAKCGFISE---ARTLFDKMSE--RN-TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~---A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 459 (566)
.+...++.+|...+..+. |.++++.+.. |+ +..+..-+..+.+.++.+++.+.+.+|.....-....+..+++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 456677777877776544 4445544432 44 34444556666668888999999999988744334445554444
Q ss_pred H---hccCChHHHHHHHHHhHHhcCCCCChh-HHH-HHHH---HHHhcC------CHHHHHHHHHhcC----CCCCHHH-
Q 036165 460 C---CHVGLVELGQRLFNMMQEKYKIMPRTE-HYA-CMVD---LLGRAG------RLAEAYEMIKTMS----TEPDLFV- 520 (566)
Q Consensus 460 ~---~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~-~l~~---~~~~~g------~~~~A~~~~~~~~----~~p~~~~- 520 (566)
+ ... ....+...++.+... .+.|... ... .++. ...+.+ +.+...++++... .+.+..+
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4 333 234566666665554 4555543 111 1111 111211 1444444454322 2223222
Q ss_pred --HHHHH----HHHHhcCCHHHHHHHHHHHh
Q 036165 521 --WGALL----GACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 521 --~~~l~----~~~~~~g~~~~A~~~~~~~~ 545 (566)
..+++ ..+.+.++++.|...|+-++
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 23333 34668889999999998655
No 269
>PRK11906 transcriptional regulator; Provisional
Probab=94.81 E-value=1.4 Score=42.94 Aligned_cols=127 Identities=12% Similarity=0.104 Sum_probs=89.2
Q ss_pred hHHHHHHHHHhhhc--CCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 432 CDEAIELFNQMEER--KKL-DHLSFTAVLTACCH---------VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 432 ~~~A~~~~~~~~~~--~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
.+.|..+|.+.... ..| ....|..+..++.. ..+..+|.++.++..+. -+-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 45677777777733 222 34444444443321 23456677777777764 244677777778878888
Q ss_pred CCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 500 GRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 500 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
|+++.|...|+++. ..|| ..+|......+.-.|+.++|.+.++++++++|.-..+-++--+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 89999999999987 4565 5667777777889999999999999999999977655544333
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.77 E-value=4.2 Score=39.28 Aligned_cols=148 Identities=12% Similarity=-0.020 Sum_probs=76.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC-C---CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hh
Q 036165 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K---LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TE 487 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 487 (566)
....+|..+...+.+.|+++.|...+.++.... . ..+.....-++..-..|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777777888888888888877777642 1 13444555556666777888888877777662 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 488 HYACMVDLLGRAGRLAEAYEMI-KTMSTEPDLFVWGALLGACKNH------GNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
....+...+.. ..+.....- .....+.-..++..+..-+... ++.+++...|+.+.+..|+....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 000000000 0000000012233333333333 67788888888888888877777777776
Q ss_pred HHhh
Q 036165 561 LYAN 564 (566)
Q Consensus 561 ~~~~ 564 (566)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6543
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.71 E-value=0.065 Score=31.54 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 520 VWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888654
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=2.8 Score=36.90 Aligned_cols=189 Identities=14% Similarity=0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHhcC
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN--TVTWNSMIFGCANHG 430 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~ 430 (566)
|.....+|...++++++...+.+..+- .+.+...|. ..+.++.|.-+.+++.+-+ +..|+--...|.++|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 334445666777777777766655431 111111111 1123445555555555422 234556677888999
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC----CCChhHHHHHHHHHHhcCCHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI----MPRTEHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~ 506 (566)
.++.|-..+++.-+. .+..++++|++++++...-... ..-...+......|.+..++++|-
T Consensus 106 spdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred CcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 988888777776543 2334556666666665432111 112344566677888889998887
Q ss_pred HHHHhcC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh----hCCCCchHHHHHHHHHhh
Q 036165 507 EMIKTMS-------TEPDL-FVWGALLGACKNHGNIELAEIAAKHLSE----LEPESAANNMLLTDLYAN 564 (566)
Q Consensus 507 ~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~ 564 (566)
..+.+-. .-++. ..+.+.+-.+.-..|+..|++.++..-+ ..|++......|...|-.
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc
Confidence 7666543 11332 2344445555666689999999888554 456676667666666543
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=3.7 Score=37.41 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=77.9
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCChH
Q 036165 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER----NTVTWNSMIFGCANHGYCD 433 (566)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 433 (566)
......|++..+...++........ +....-.++++|...|+.+.|..++..+... .......-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777777765444 3455566788888888888888888887641 1111112233333433333
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036165 434 EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500 (566)
Q Consensus 434 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 500 (566)
+...+-.+.-. .+.|...-..+...+...|+.+.|.+.+-.+..+..-.-|...-..|++.+.--|
T Consensus 221 ~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333222222 3446666666666777777777777655544443111223334445555544444
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.44 E-value=0.17 Score=31.36 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 455 (566)
|..+...|...|++++|+++|+++.+..+.|...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3444455555555555555555555544444444433
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.33 E-value=9.8 Score=41.58 Aligned_cols=155 Identities=12% Similarity=0.017 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHH----HHHhcCCCHHHHHHHH
Q 036165 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI----SGFSKSGDQVMVSKLF 303 (566)
Q Consensus 228 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~ 303 (566)
+++++|+..+.++. ...|.-.+..-.++|-+++|+.++ .|+...+..+. ..+.....+++|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45666666665553 334444555555666677776654 45555554444 4445567777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 036165 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA--TISSILPACASAANMRRGKEIHGCAIVMGV 381 (566)
Q Consensus 304 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 381 (566)
+..-+. .--+.+|..+|++.+|+.+..++.. .-+.. +-..|..-+...++.-+|-++..+....
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-- 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-- 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--
Confidence 665322 2246778888999999888887732 12222 2256666777777777777766654432
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413 (566)
Q Consensus 382 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 413 (566)
..-.+..|++...+++|.++.....+
T Consensus 1029 ------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1029 ------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred ------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 12345567777788999888776664
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.29 E-value=3.7 Score=36.61 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=30.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 423 IFGCANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..-|.+.|.+..|..-+++|.+..+... ..+-.+..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3455666666666666666666522222 2344445566666666666655555443
No 277
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.07 E-value=0.18 Score=32.63 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
-.+.-++.+.|++++|.+..+.+++.+|+|..+..+...|
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3455678999999999999999999999998877665544
No 278
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.06 E-value=6.6 Score=38.56 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCCCHHHH-HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH--hcCCHHHHHHHHHhcC--CCCCHHH
Q 036165 446 KKLDHLSF-TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG--RAGRLAEAYEMIKTMS--TEPDLFV 520 (566)
Q Consensus 446 ~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~--~~p~~~~ 520 (566)
..++..|+ +.++.-+.+.|-+.+|..++..+... .+|+...|..++..=. ..-++..+...++.|. .-.|+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 34444332 34445555566666666666666542 3344555555543211 1122556666666665 2356666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-hCCC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSE-LEPE 550 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~ 550 (566)
|...+.--..+|..+.+-.++.++++ ++|.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 76666666677777777666666664 4443
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.04 E-value=8.5 Score=39.80 Aligned_cols=276 Identities=15% Similarity=0.077 Sum_probs=154.5
Q ss_pred hhHHHHHHHHhhhCCCCccHHHH-HHHHHH-HhcCCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcC--
Q 036165 261 ATEALNLVEEIGTPRVKPNVVTW-NTLISG-FSKSGDQVMVSKLFQLMRA-------KGVEPDVVSWTSVISGLVHNF-- 329 (566)
Q Consensus 261 ~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g-- 329 (566)
...+.+.++...+.|..-..... .....+ +....|.+.|...++.+.+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 46788888888776632222111 112222 4466789999999998866 44 4456677777777754
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH----hcCCH
Q 036165 330 ---CNDEAFDTFKEMLSQGFCPTSATISSILPACAS-AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA----KCGFI 401 (566)
Q Consensus 330 ---~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~ 401 (566)
+.+.|+.++.+.-+.| .|+.......+.-... ..+...|.+++..+.+.|..+ .+-.+..+|. -..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCH
Confidence 5567888888888877 5555554444433333 356778888888888887542 2222333332 23467
Q ss_pred HHHHHHHHhcCCCCh-hHHHHHHH--HHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH----Hhc----cCChHHHH
Q 036165 402 SEARTLFDKMSERNT-VTWNSMIF--GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA----CCH----VGLVELGQ 470 (566)
Q Consensus 402 ~~A~~~~~~~~~~~~-~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----~~~----~g~~~~a~ 470 (566)
+.|..++.+..+.+. .+...+.. .+.. +.++.+.-.+..+.+.......+-...+.- ... ..+.+.+.
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 888888887776542 22222222 2222 666667666666665533333322222211 111 12444555
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 036165 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRA----GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG----NIELAEIAAK 542 (566)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~ 542 (566)
..+.+.... | +......|.+.|... .+++.|...+.....++ ......+...+ .+| ....|.+.++
T Consensus 460 ~~~~~a~~~-g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~-e~g~g~~~~~~a~~~~~ 533 (552)
T KOG1550|consen 460 SLYSRAAAQ-G---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMH-EHGEGIKVLHLAKRYYD 533 (552)
T ss_pred HHHHHHHhc-c---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHH-hcCcCcchhHHHHHHHH
Confidence 555555443 2 445555666655443 24777777777766444 33333333332 222 2577777777
Q ss_pred HHhhhCCC
Q 036165 543 HLSELEPE 550 (566)
Q Consensus 543 ~~~~~~p~ 550 (566)
++.+.+.+
T Consensus 534 ~~~~~~~~ 541 (552)
T KOG1550|consen 534 QASEEDSR 541 (552)
T ss_pred HHHhcCch
Confidence 77765543
No 280
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.94 E-value=0.96 Score=35.35 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 395 YAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
+...|+++.|++.|.+... .....||.-..++.-+|+.++|++-+++..+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3444555555555544432 23444555555555555555555555554444
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=17 Score=42.99 Aligned_cols=364 Identities=11% Similarity=0.002 Sum_probs=186.7
Q ss_pred HHHHHcccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhhHHHHHHHHHHcCCh
Q 036165 185 VLKACGHLSDIGTGEKIHSLVLKHSF--GTDAFVVSSLIDMYSKCGSVEKAKKVFDE-MVEKDIVAMNAMVSGYVQRGLA 261 (566)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 261 (566)
+..+-.+.+.+..|...++.-..... ......+-.+...|...+++|....+... ...++ ...-|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 34444566777777777776311000 11223344445588888888887777663 33332 23345566778999
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChhHHHHHHHH
Q 036165 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS-VISGLVHNFCNDEAFDTFKE 340 (566)
Q Consensus 262 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~ 340 (566)
..|...|+.+.+.+ ++...+++-++......|.++......+-.... ..+....|+. =+.+-.+.+++|.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999988764 333667777777777777777766644444332 2223333333 2344467777777666554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCc---hHH--HHHHH-----HHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 341 MLSQGFCPTSATISSILPACASAAN---MRR--GKEIH-----GCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFD 409 (566)
Q Consensus 341 m~~~~~~~~~~~~~~ll~~~~~~~~---~~~--a~~~~-----~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 409 (566)
..++ -+-.+. .+.....+..+ +.. ..+.. ..+...+.. .-...|..++....-. +.+.-.+...
T Consensus 1543 -~~n~--e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1543 -DRNI--EYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK 1617 (2382)
T ss_pred -cccc--cchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 1111 111111 02222211111 111 11111 111111111 1123444454444332 2222222222
Q ss_pred hcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCC-----CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 410 KMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKL-----DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 410 ~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.... .+..-|..-+.--....+..+-+-.+++..-. ..| -..+|....+.+-+.|.++.|...+-.+.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 2221 11122332222211111222222222222211 122 23478899999999999999999887777
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCC--------HHHHHHHHHH--------H-HhcCC--HHH
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPD--------LFVWGALLGA--------C-KNHGN--IEL 536 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--------~~~~~~l~~~--------~-~~~g~--~~~ 536 (566)
+. + .| ..+--.+.-+...|+-..|+.++++.. ..|+ +..-+..+.. | ...|+ .+.
T Consensus 1698 e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ 1773 (2382)
T KOG0890|consen 1698 ES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKD 1773 (2382)
T ss_pred hc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHH
Confidence 64 3 33 345556678899999999999998765 1222 2333333322 1 22333 356
Q ss_pred HHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 537 AEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 537 A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.++.|.++.+..|....-|..||..|.
T Consensus 1774 ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1774 ILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred HHHHHHHHHHHcccccCceeeHHHHHH
Confidence 678888888999977777777775443
No 282
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.87 E-value=0.13 Score=29.28 Aligned_cols=31 Identities=19% Similarity=0.076 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
+..+..++.+.|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4556778888999999999999999999874
No 283
>PRK09687 putative lyase; Provisional
Probab=93.86 E-value=5.4 Score=36.94 Aligned_cols=236 Identities=11% Similarity=0.021 Sum_probs=122.6
Q ss_pred CchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCCh----HHHHHHHHHhHHCCCCCCcchHHHHH
Q 036165 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH----QEAVTVFHEMHIQGLKQNIFVIPSVL 186 (566)
Q Consensus 111 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll 186 (566)
++..+....+..+...|..+....+..-...+|...-...+.++.+-|+. .++..++..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 45555666666666666543333333333345555555666667776663 4567777666332 34545555555
Q ss_pred HHHcccCChhH--HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-ChhH
Q 036165 187 KACGHLSDIGT--GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG-LATE 263 (566)
Q Consensus 187 ~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 263 (566)
.+++..+.... ..+..+.+...-..++..+-...+.++.+.++.+....+..-+..+|...-...+.++.+.+ +...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 55544432110 11122222221123455666666777777776554444444445566666555566666543 2445
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 264 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
+...+..+.. .++...-...+.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|+..+..+.+
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 6665555553 34555555666677777764 3444444433332 1 233455666666664 56666666665
Q ss_pred CCCCCCHHHHHHHHHHH
Q 036165 344 QGFCPTSATISSILPAC 360 (566)
Q Consensus 344 ~~~~~~~~~~~~ll~~~ 360 (566)
. .||..+....+.+|
T Consensus 263 ~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 263 K--FDDNEIITKAIDKL 277 (280)
T ss_pred h--CCChhHHHHHHHHH
Confidence 3 23554444444433
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.69 E-value=3.6 Score=34.33 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 036165 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379 (566)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 379 (566)
.+.++.+.+.++.|+...+..+++.+.+.|++.. +.+++..++-+|+......+-.+.. ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3455556667788888888888888888887554 5555666777777666655433332 222233322222221
Q ss_pred -CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 380 -GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 380 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
+ ..+..+++.+...|++-+|.+..+....-+......++.+-.+.++...-..+|+
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1244566777777888888887777554333334445555555555444434433
No 285
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.65 E-value=5 Score=35.85 Aligned_cols=241 Identities=17% Similarity=0.168 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHccCch
Q 036165 295 DQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCNDEAFDTFKEMLS---QGF--CPTSATISSILPACASAANM 366 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~--~~~~~~~~~ll~~~~~~~~~ 366 (566)
++++|+.-|.++.+..-+.. -.....+|..+.+.|++++.++.|.+|+. ..+ .-+....+.++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555555544321111 12334456666777777777777776652 111 23344566666666666666
Q ss_pred HHHHHHHHHHHHh-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------C---ChhHHHHHHHHH
Q 036165 367 RRGKEIHGCAIVM-----GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE------------R---NTVTWNSMIFGC 426 (566)
Q Consensus 367 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~---~~~~~~~l~~~~ 426 (566)
+....+++.-++. +-..--.+-..|...|...|.+....+++.++.. . -...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555554433221 1111122334566777777777777777666542 0 123566667777
Q ss_pred HhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHH-----hccCChHHHHHHHHHhHHhc---CCCCCh--hHHHHHHH
Q 036165 427 ANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTAC-----CHVGLVELGQRLFNMMQEKY---KIMPRT--EHYACMVD 494 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~---~~~p~~--~~~~~l~~ 494 (566)
..+.+-..-..+|++.... ..|.+... .+|+-| .+.|.+++|..-|=++.+.+ |.+... .-|..|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 7777777777777776544 33444333 334433 45678887775444443332 222111 22445556
Q ss_pred HHHhcC----CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036165 495 LLGRAG----RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 495 ~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (566)
++.+.| +-.+|.. ....|.......++.+|... +..+-++++
T Consensus 281 MLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 666655 1222211 11246666777888887544 444433333
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.56 E-value=3.1 Score=34.27 Aligned_cols=53 Identities=15% Similarity=-0.049 Sum_probs=29.5
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
.+.++.+++..++..+.-..|.....-..-...+...|++.+|..+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 35566777777777666542222222222223345667777777777776543
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.50 E-value=0.012 Score=48.49 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=85.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHH
Q 036165 83 ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQE 162 (566)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 162 (566)
.+++.+...+.+....+.++.++..+...++...+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777888888999999999887777899999999999999988999999884433 333567788888888888
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 163 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
|.-++.++.... ..+..+...++++.|.+.... .++..+|..+++.+...+.
T Consensus 89 a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 888887764321 111112344455555433221 2346666666666655443
No 288
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.27 E-value=4.1 Score=42.61 Aligned_cols=47 Identities=30% Similarity=0.238 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHccc
Q 036165 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192 (566)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 192 (566)
...| .+|-.|.|.|++++|.++..+.... .......+...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3445 5677788999999999998665543 555667788888888665
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.92 E-value=7.8 Score=35.96 Aligned_cols=159 Identities=10% Similarity=-0.034 Sum_probs=82.5
Q ss_pred HHHHHHHHHHccCchHH---HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--ChhHHHHHHHH
Q 036165 352 TISSILPACASAANMRR---GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-R--NTVTWNSMIFG 425 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~l~~~ 425 (566)
++..++.++...+..+. |..+++.+...... .+.++..-++.+.+.++.+++.+++.+|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45556666666655443 44444455333222 344444455666667788888888877764 1 23345554444
Q ss_pred H---HhcCChHHHHHHHHHhhhc-CCCCHH--H---HHHHHHHHhccC------ChHHHHHHHHHhHHhcCCCCChhHHH
Q 036165 426 C---ANHGYCDEAIELFNQMEER-KKLDHL--S---FTAVLTACCHVG------LVELGQRLFNMMQEKYKIMPRTEHYA 490 (566)
Q Consensus 426 ~---~~~~~~~~A~~~~~~~~~~-~~~~~~--~---~~~l~~~~~~~g------~~~~a~~~~~~~~~~~~~~p~~~~~~ 490 (566)
+ ... ....|...+..+... ..|... . ....+-.....+ ..+...++++.+.+..+.+.+..+-.
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4 333 344555555555544 444332 1 111111122221 24555566665544435555555544
Q ss_pred HHH-------HHHHhcCCHHHHHHHHHhc
Q 036165 491 CMV-------DLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 491 ~l~-------~~~~~~g~~~~A~~~~~~~ 512 (566)
++. ..+.+.+++++|.++|+-.
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 433 3345778999999999743
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.88 E-value=1.9 Score=35.67 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=8.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 036165 491 CMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~ 511 (566)
.|.-+-.+.|++.+|.+.|..
T Consensus 172 ALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHhHHHHhccchHHHHHHHHH
Confidence 333333444444444444443
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.82 E-value=4.9 Score=33.55 Aligned_cols=131 Identities=8% Similarity=0.094 Sum_probs=61.5
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcC
Q 036165 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG--SVEKAKKVFDEMV 241 (566)
Q Consensus 164 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 241 (566)
.+.++.+.+.|++|+...+..++..+.+.|++....+ ++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3445555566677777777777777777776544333 333344444333332221111111 1222333333332
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 242 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
..+..+++.+...|++-+|+++.+...... .++ -..++.+..+.+|...-..+++-.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234455566666677777766666542211 111 123445555555544444444443
No 292
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.73 E-value=0.011 Score=48.59 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=52.7
Q ss_pred HHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHH
Q 036165 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 264 (566)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777666556677777888888887777777777663322 3334455555666666666
Q ss_pred HHHHHHh
Q 036165 265 LNLVEEI 271 (566)
Q Consensus 265 ~~~~~~m 271 (566)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6655554
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.52 E-value=1.8 Score=36.72 Aligned_cols=88 Identities=14% Similarity=0.017 Sum_probs=54.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCHH-----HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHH
Q 036165 423 IFGCANHGYCDEAIELFNQMEERKKLDHL-----SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLL 496 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 496 (566)
..-+...|++++|..-|....+.+++... .|..-..++.+.+.++.|+.-..+.++. .|+. .....-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 34566778888888888888777555332 3444445667777777777777666643 3321 2222234566
Q ss_pred HhcCCHHHHHHHHHhcC
Q 036165 497 GRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~ 513 (566)
.+..++++|+.-|+++.
T Consensus 179 ek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKIL 195 (271)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 67777777777777766
No 294
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=16 Score=39.33 Aligned_cols=115 Identities=11% Similarity=0.158 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCC---CCccHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCCCChhhHH--
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPR---VKPNVVTWNTLISGFSKSGDQ--VMVSKLFQLMRAKGVEPDVVSWT-- 319 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 319 (566)
-|..|+..|...|..++|+++|.+..... ..-....+-.++..+-+.+.. +...+.-+-..+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47888899999999999999998886532 011111222233333333332 33443333333221111111111
Q ss_pred ----------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036165 320 ----------SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361 (566)
Q Consensus 320 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 361 (566)
..+-.|......+-+..+++.+....-.++..-.+.++..|+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 112235555666666666666665544445555555555443
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.22 E-value=1.2 Score=36.56 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=68.6
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCC
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH-YACMVDLLGRAGRLAEAYEMIKTMSTE-PDLFVWGALLGACKNHGN 533 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~ 533 (566)
++..-...++.+++..++..+.- +.|.... -..-+..+.+.|++.+|..+++++... |....-.+|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 33445678899999999999984 4665432 233456688999999999999998743 555555677766655544
Q ss_pred HHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 534 IELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 534 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
-..=....+++++..| ++....++..++.
T Consensus 93 D~~Wr~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 93 DPSWRRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred ChHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 3444445556666555 5555555555444
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.21 E-value=1.6 Score=39.77 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCChhHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE----KYKIMPRTEHYAC 491 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 491 (566)
..++..++..+...|+.+.+...++++....+-+...|..++.+|...|+...|+..|+.+.+ ..|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566677777777777777777777777777777777777777777777777777776654 2377777776665
Q ss_pred HHHH
Q 036165 492 MVDL 495 (566)
Q Consensus 492 l~~~ 495 (566)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.04 E-value=1.3 Score=42.76 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=43.2
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-CCHHHHHHHHHHHHhcCCHHHH
Q 036165 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-E-PDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A 537 (566)
....|+++++.+.+...... +.....+..++++...+.|++++|...-+-|.. + .++.+...-.......|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 34556666665555554432 233344455555555556666666655555541 1 2222222222233444555666
Q ss_pred HHHHHHHhhhCC
Q 036165 538 EIAAKHLSELEP 549 (566)
Q Consensus 538 ~~~~~~~~~~~p 549 (566)
...|++++.++|
T Consensus 411 ~~~wk~~~~~~~ 422 (831)
T PRK15180 411 YHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccCC
Confidence 666666665554
No 298
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.88 E-value=14 Score=36.49 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=92.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
.|.....+++..+..+-++.-...+..+|+.-| .+...+..+++.|... ..+.-..+|+.+++..+. +...-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355666777777877777788888888887754 5566777777777776 556667777777777665 555555666
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---C---C---hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-C-CCCHHHHHHHHHHHh
Q 036165 393 DMYAKCGFISEARTLFDKMSE---R---N---TVTWNSMIFGCANHGYCDEAIELFNQMEER-K-KLDHLSFTAVLTACC 461 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~---~---~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~ 461 (566)
..|.+ ++...+...|.++.. | + ...|..+...- ..+.+..+.+..++... . ..-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66665 677777777766542 1 1 01233332211 22344444444444443 1 112223333334455
Q ss_pred ccCChHHHHHHHHHhHH
Q 036165 462 HVGLVELGQRLFNMMQE 478 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~ 478 (566)
...++++|+++++.+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 55566666666665554
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.70 E-value=9.5 Score=34.17 Aligned_cols=160 Identities=11% Similarity=0.098 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSA 351 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~ 351 (566)
..+...|...+++.+..++++++....... -...|..=|..|...++-..-..+|++.+... --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 345666666777777777777665432111 13456666777777777777777787765422 223333
Q ss_pred HHHHHHHHH-----HccCchHHHHHHHHH-HHH---hCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhcC------CC
Q 036165 352 TISSILPAC-----ASAANMRRGKEIHGC-AIV---MGVEGDL--HVRSALVDMYAKCGFISEARTLFDKMS------ER 414 (566)
Q Consensus 352 ~~~~ll~~~-----~~~~~~~~a~~~~~~-~~~---~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~ 414 (566)
. ..++.-| .+.|.+++|..-|-+ ... .|-+... --|..|.+++.+.|- .-|+.-. +|
T Consensus 229 I-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 I-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDP 302 (440)
T ss_pred H-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCH
Confidence 3 2333333 456777777643333 322 2322211 123445566655541 1111111 15
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 450 (566)
.+...+.|+.+|.. ++..+-+++++.-.+..-.|+
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~Dp 337 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDP 337 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccH
Confidence 56677777877744 455555555555444433343
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.46 E-value=0.5 Score=28.60 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777777764
No 301
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=3.6 Score=38.01 Aligned_cols=155 Identities=12% Similarity=-0.016 Sum_probs=111.4
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHH----HHHHHHhccCChHH
Q 036165 396 AKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT----AVLTACCHVGLVEL 468 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~ 468 (566)
.-.|+..+|-..++++.+ .|..++.-.=.+|...|+.+.-...++++...-.++...|. .+.-++...|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345777788778888775 46777888888999999999999999998877455553333 23335568999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---P---DLFVWGALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 469 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (566)
|++.-++..+. -+.|.-.-.++...+.-.|+++++.++..+-... . -...|....-.+...+.++.|.++|+
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988754 2334444556778888999999999999876521 1 12234444455667799999999998
Q ss_pred HHh--hhCCCCc
Q 036165 543 HLS--ELEPESA 552 (566)
Q Consensus 543 ~~~--~~~p~~~ 552 (566)
+=+ +.+.+|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 755 3555555
No 302
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.32 E-value=0.3 Score=28.23 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHHHHHhccCChHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a 469 (566)
.|.|...|+.+...+...|++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444444
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.32 E-value=23 Score=37.75 Aligned_cols=189 Identities=17% Similarity=0.064 Sum_probs=106.7
Q ss_pred HHHccCchHHHHHHHHHHHHhCCCCcHh-------HHHHHH-HHHHhcCCHHHHHHHHHhcCC--------CChhHHHHH
Q 036165 359 ACASAANMRRGKEIHGCAIVMGVEGDLH-------VRSALV-DMYAKCGFISEARTLFDKMSE--------RNTVTWNSM 422 (566)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 422 (566)
......++.+|..+..++...-..|+.. .++.+- ......|++++|.++.+.... ..+..+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456788889988888876643332211 222221 223456888998888776553 455667777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhc-CCCCHHH---HHHHH--HHHhccCC--hHHHHHHHHHhHHhcCCC-C----ChhHH
Q 036165 423 IFGCANHGYCDEAIELFNQMEER-KKLDHLS---FTAVL--TACCHVGL--VELGQRLFNMMQEKYKIM-P----RTEHY 489 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~---~~~l~--~~~~~~g~--~~~a~~~~~~~~~~~~~~-p----~~~~~ 489 (566)
..+..-.|++++|..+.++..+. ..-+... |..+. ..+...|. +++....+......+... | -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 88888899999999988887766 3333333 33332 24556673 344444555444331111 1 12334
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhcC-CCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 490 ACMVDLLGRA-GRLAEAYEMIKTMS-TEPDL-FV---WGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 490 ~~l~~~~~~~-g~~~~A~~~~~~~~-~~p~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
..+..++.+. +...+|..-++--. ..|.. .. +..|+......|+.++|...++++...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4455555541 12222322222221 12221 12 235667788999999999999998864
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.25 E-value=3.9 Score=34.80 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh------hH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT------EH 488 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 488 (566)
.+..+...|.+.|+.++|.+.|.++.+. ..+.. ..+..+++.....+++..+...+.++........|. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566666666666666666666655 22222 235566666666777777776666665431111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|..| .+...|++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345678888877776665
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.08 E-value=11 Score=35.10 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=24.6
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHcc--cC----ChhHHHHHHHHHHHc
Q 036165 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LS----DIGTGEKIHSLVLKH 208 (566)
Q Consensus 162 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 208 (566)
+.+++++.|.+.|..-+..+|.+....... .. ....+..+|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 445566666776666666665553333222 11 234455566666554
No 306
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.00 E-value=10 Score=33.29 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=8.7
Q ss_pred HccCchHHHHHHHHHH
Q 036165 361 ASAANMRRGKEIHGCA 376 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~ 376 (566)
.-.+.+++|.+++.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3444666666665543
No 307
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.87 E-value=0.55 Score=27.53 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhH
Q 036165 146 RWIALTGAYARRGYHQEAVTVFHEMH 171 (566)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~~~~~m~ 171 (566)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777888888888888887744
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.62 E-value=24 Score=36.88 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 036165 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 534 (566)
+.++.++|.++.++ ..|...|..|+..+...=.+
T Consensus 673 el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence 44455555555543 46888898888776655433
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=5.9 Score=39.74 Aligned_cols=152 Identities=16% Similarity=0.067 Sum_probs=103.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 036165 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 226 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 305 (566)
-.|+++.|..++..+++ ...+.++..+.++|-.++|+++ .+|... -.....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHh
Confidence 45778877776666652 3445666777778888887764 233221 12334567888988887766
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH
Q 036165 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385 (566)
Q Consensus 306 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 385 (566)
.. +..-|..|.++..+.|++..|.+.|..... +..|+-.+...|+-+....+-....+.|..
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--- 724 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN--- 724 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc---
Confidence 43 566799999999999999999999887654 456666777777776666666666665543
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE 413 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 413 (566)
|....+|...|+++++.+++.+-.+
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 3344566778888888888766543
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.06 E-value=5.9 Score=33.74 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKLFQLMR 307 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (566)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+++.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555554333322 2234445555555555555555555443
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.02 E-value=0.58 Score=25.81 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 520 VWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
.|..+...+...|++++|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5667777788888888888888888887775
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.98 E-value=17 Score=34.03 Aligned_cols=144 Identities=11% Similarity=0.144 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--c----CCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHHcCC-
Q 036165 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK--C----GSVEKAKKVFDEMVEK-------DIVAMNAMVSGYVQRGL- 260 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~- 260 (566)
++....+++.+.+.|+.-+..++-+..-.... . -...+|.++|+.|.+. +-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788889999988887766553333332 2 2367789999999542 33345555433 3333
Q ss_pred ---hhHHHHHHHHhhhCCCCccH--HHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036165 261 ---ATEALNLVEEIGTPRVKPNV--VTWNTLISGFSKSGD--QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333 (566)
Q Consensus 261 ---~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 333 (566)
.+.+..+|+.+.+.|...+. .....++..+....+ ...+.++++.+.+.|+++....|..+.-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 35566778888877766543 344445544443333 34788888999999999888887766543333333324
Q ss_pred HHHHHHH
Q 036165 334 AFDTFKE 340 (566)
Q Consensus 334 A~~~~~~ 340 (566)
....+.+
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 4333333
No 313
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.89 E-value=17 Score=37.75 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=30.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 524 LLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.+.+-.-.+++.+|.++.+.|.+++|...-....+.+|+
T Consensus 372 y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 372 YFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENIL 410 (1226)
T ss_pred hhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHH
Confidence 344556778999999999999999998877777666654
No 314
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.58 E-value=54 Score=39.31 Aligned_cols=153 Identities=11% Similarity=-0.017 Sum_probs=92.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhCCC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036165 250 AMVSGYVQRGLATEALNLVEEIGTPRV--KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327 (566)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 327 (566)
++..+-.+.+.+.+|+..++.-..... .....-|..+...|+..++++....+...... +. .....|.-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHHh
Confidence 455566778889999988888321111 12233445555689999999988777664111 11 23344555778
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
.|++..|...|+.+.+.+ ++...+++.++......+.++......+-......+-....++.=+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999998764 3346677777777777777776665444433322111122222233444566666666555
Q ss_pred HH
Q 036165 408 FD 409 (566)
Q Consensus 408 ~~ 409 (566)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.35 E-value=3.2 Score=37.94 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHhhh-----CCCCccHHHHHH
Q 036165 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNLVEEIGT-----PRVKPNVVTWNT 285 (566)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 285 (566)
..++..++..+...|+.+.+.+.++++... +...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345666788888888888888888888543 566788888888888888888888887754 566666665544
Q ss_pred HHHH
Q 036165 286 LISG 289 (566)
Q Consensus 286 ll~~ 289 (566)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 316
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.61 E-value=13 Score=31.00 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHH--
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLD--HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACM-- 492 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l-- 492 (566)
.|..-+. +.+.+..++|+.-|..+.+....+ ....-.........|+...|...|+++-.. .-.|-.. -...|
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHH
Confidence 4443333 345677888888888887762222 222333344567888999999999998765 2223221 11111
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 493 VDLLGRAGRLAEAYEMIKTMSTE--P-DLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
...+...|.+++.....+-+... | -...-.+|.-+-.+.|++.+|...|+.+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456789999988888776633 2 234456777788899999999999999886
No 317
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.31 E-value=28 Score=34.49 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.+..++-+.|+.++|++.+++|.+..+. +......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3455555677777777777777665333 33456677777777777777777777653
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=6.2 Score=39.61 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=96.3
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 234 (566)
.-.|+++.|..++.... ...-+.+...+.++|-.++|.++ .+|..- -.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHH
Confidence 44677777776655442 22334455555566666655544 222221 123345678888887
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 036165 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314 (566)
Q Consensus 235 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 314 (566)
++..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 658 ~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N 725 (794)
T KOG0276|consen 658 DLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N 725 (794)
T ss_pred HHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c
Confidence 776554 3566788899999999999999988887654 445666777778877666666666666532 2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 315 VVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
.-..+|...|+++++.+++..-
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHhc
Confidence 2234577788888888887654
No 319
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.13 E-value=17 Score=31.65 Aligned_cols=176 Identities=13% Similarity=-0.001 Sum_probs=83.5
Q ss_pred cCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh-HHHHHHH--HHHhcCChHHHHHHH
Q 036165 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV-TWNSMIF--GCANHGYCDEAIELF 439 (566)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~ 439 (566)
.|-...|+-=|.+.....+. -+.+||.+.--+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 34444444444444433222 3567777777777788888888888777763321 2222222 222356777777666
Q ss_pred HHhhhcCCCCHH--HHHHHHHHHhccCChHHHHH-HHHHhHHhcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhcCCC
Q 036165 440 NQMEERKKLDHL--SFTAVLTACCHVGLVELGQR-LFNMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEMIKTMSTE 515 (566)
Q Consensus 440 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 515 (566)
.+.-+..+.|+. .|..+.. ..-++.+|.. +.++.. |. |..-|.. ++..|.-.=..+.+.+-...-...
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~ 228 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KS--DKEQWGWNIVEFYLGKISEETLMERLKADATD 228 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccc
Confidence 666555443332 2333322 1223444443 333333 22 3233332 222222111122222222211100
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 516 ------PDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 516 ------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
-=..||--+..-+...|+.++|..+|+-++..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11345566666667777777777777766653
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.09 E-value=17 Score=31.63 Aligned_cols=160 Identities=12% Similarity=-0.016 Sum_probs=87.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCC-CCchhHHHHHHH
Q 036165 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF-GTDAFVVSSLID 222 (566)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~ 222 (566)
+..||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +--.|++..|.+=+...-+... .|-...|--
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY--- 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY--- 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHH---
Confidence 45789999889999999999999999988654433333333333 2356888888877776665431 121222222
Q ss_pred HHHhcCCHHHHHHH-HHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCC------CccHHHHHHHHHHHhcCCC
Q 036165 223 MYSKCGSVEKAKKV-FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV------KPNVVTWNTLISGFSKSGD 295 (566)
Q Consensus 223 ~~~~~g~~~~A~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~p~~~~~~~ll~~~~~~~~ 295 (566)
.--..-++.+|..- .++....|..-|...|-.+.-.+-.++ .+++++....- ..=..||--+...+...|+
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 22233455666543 344455555556555544443322222 12222222110 0112455556666666677
Q ss_pred HHHHHHHHHHHHHc
Q 036165 296 QVMVSKLFQLMRAK 309 (566)
Q Consensus 296 ~~~a~~~~~~~~~~ 309 (566)
.++|..+|+-.+..
T Consensus 253 ~~~A~~LfKLaian 266 (297)
T COG4785 253 LDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666665543
No 321
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.42 E-value=42 Score=35.45 Aligned_cols=52 Identities=13% Similarity=-0.154 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+..+...|...+|...+..+....+......+.....+.|.++.++....+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 4556677888888888877765566666666767677888888887766544
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.22 E-value=3.8 Score=33.17 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred HHHHHHH---HHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 036165 452 SFTAVLT---ACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACMVDLLGRAGRLAEAYEMIKTMSTEP-DLFVWGALLG 526 (566)
Q Consensus 452 ~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~ 526 (566)
..+.|+. .-...++.+++..+++.+.- +.|+.. .-..-+..+...|++++|.+++++....+ ...--..|..
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3444444 33468999999999999984 456542 22334566889999999999999998543 4333445554
Q ss_pred HHH-hcCCHHHHHHHHHHHhhhCC
Q 036165 527 ACK-NHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 527 ~~~-~~g~~~~A~~~~~~~~~~~p 549 (566)
.|. -.||.+ =...-..+++.++
T Consensus 86 ~CL~al~Dp~-Wr~~A~~~le~~~ 108 (153)
T TIGR02561 86 LCLNAKGDAE-WHVHADEVLARDA 108 (153)
T ss_pred HHHHhcCChH-HHHHHHHHHHhCC
Confidence 444 344432 2333344445443
No 323
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.00 E-value=1.9 Score=42.87 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=76.5
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 537 (566)
..|+...|.+.+..+... .|. ......|...+.+.|...+|-.++.+.. ..-.+.++..+.+++....+.++|
T Consensus 619 ~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 468888999888877643 332 2345567788888888889988887765 334567788899999999999999
Q ss_pred HHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 538 EIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 538 ~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
++.++++++..|+++..-..|-.|-
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999999998877766553
No 324
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.84 E-value=25 Score=32.22 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=48.6
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
.++.....+...|.+.|++.+|+..|-...+++...+..++......|...++--.+-+ .+--|..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R--------------aVL~yL~ 153 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR--------------AVLQYLC 153 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH--------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH--------------HHHHHHH
Confidence 46788889999999999999999888655444444443344433334443333222111 2223556
Q ss_pred cCChHHHHHHHHHhHHh
Q 036165 463 VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~ 479 (566)
.++...|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 77888888887777654
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.72 E-value=5.4 Score=33.52 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 534 IELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 534 ~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+++|...|+++.+.+|+|..+...|-
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 56677777777778888877665553
No 326
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.71 E-value=43 Score=34.78 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHH----H-HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcc
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVIS----G-LVHNFCNDEAFDTFKEMLS-------QGFCPTSATISSILPACASA 363 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~ 363 (566)
...+.++++...+.|.. .....+.. + +....+.+.|+..|+...+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 45677777777766522 22222222 2 3345677888888887766 44 222334444444443
Q ss_pred C-----chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc---CCHHHHHHHHHhcCC-CChhHHHHHHHHHH----hcC
Q 036165 364 A-----NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC---GFISEARTLFDKMSE-RNTVTWNSMIFGCA----NHG 430 (566)
Q Consensus 364 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~ 430 (566)
. +.+.|..++.+..+.|.+ +.... +..+|... .+...|.++|....+ ..+..+-.+..+|. ...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCC
Confidence 2 455566666666666543 32222 22222221 245566666665543 22222222222222 122
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
+.+.|..++++.-+...|...--...+..+.. ++++.+.-.+..+.+.
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 45566666666655543332222222333333 5555555554444443
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.36 E-value=22 Score=31.05 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVD 494 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 494 (566)
.+.-++.+.+.+...+++...++-.+..+.|..+-..++..++-.|++++|..-++-+-. +.|+ ...|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHHH
Confidence 344566777888889999888887777777888888899999999999999877776653 3443 455555554
Q ss_pred HHHhcCCHHHHH-HHHHhcCCCC-----CHHHHHHHH-HHHH--hcCCHHHHHHHHHHHhhhCCCCch
Q 036165 495 LLGRAGRLAEAY-EMIKTMSTEP-----DLFVWGALL-GACK--NHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 495 ~~~~~g~~~~A~-~~~~~~~~~p-----~~~~~~~l~-~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
+- .+. ++|.--. .| +...|...+ .+.. ..|.-+.+..+-+.+++..|..+.
T Consensus 81 ~e-------a~R~evfag~~-~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 81 CE-------AARNEVFAGGA-VPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH-------HHHHHHhccCC-CCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 32 222 2333222 11 234454444 3332 334556677777788887776543
No 328
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.95 E-value=5.5 Score=36.92 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVEL 468 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (566)
.+-|.++|.+++|+..|.+... | |.+++..-..+|.+...+..|+.-..........-...|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4557788888888888887664 5 777777777888888877777766665554433333345555555555666677
Q ss_pred HHHHHHHhHHhcCCCCC
Q 036165 469 GQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 469 a~~~~~~~~~~~~~~p~ 485 (566)
|.+-++.+.+ ++|+
T Consensus 184 AKkD~E~vL~---LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLA---LEPK 197 (536)
T ss_pred HHHhHHHHHh---hCcc
Confidence 7766666653 4555
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.83 E-value=8.1 Score=35.48 Aligned_cols=101 Identities=11% Similarity=0.153 Sum_probs=68.0
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh-----hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHH
Q 036165 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDI-----VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281 (566)
Q Consensus 208 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 281 (566)
.|.+.+..+...++..-....++++++..+-++.. ++. .+-.+.++ ++-.-+.++++.++..=..-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 34555666666677766667788888887777743 211 11112222 233345668888888777888888888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036165 282 TWNTLISGFSKSGDQVMVSKLFQLMRAK 309 (566)
Q Consensus 282 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (566)
+++.+|..+.+.+++..|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776544
No 330
>PRK09687 putative lyase; Provisional
Probab=85.13 E-value=32 Score=31.92 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=10.7
Q ss_pred HHHHHHhccCChHHHHHHHHHhHH
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..+.++...|+. +|...+..+.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444555542 44555554443
No 331
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.11 E-value=17 Score=33.20 Aligned_cols=112 Identities=10% Similarity=0.191 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhh--hcCCCCHHHHHHHHHHHhc-cC-ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036165 432 CDEAIELFNQME--ERKKLDHLSFTAVLTACCH-VG-LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507 (566)
Q Consensus 432 ~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 507 (566)
..+|+++|+... +..-.|......+++.... .+ ....--++.+-+...++-.++..+....++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 344555555221 1133455555555554443 11 2233334444444444556666677777777777777777777
Q ss_pred HHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 508 MIKTMST----EPDLFVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 508 ~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
+++.... ..|...|..++..-...||..-...+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 7776551 24666777777777777777666555544
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.09 E-value=23 Score=30.28 Aligned_cols=89 Identities=13% Similarity=0.000 Sum_probs=51.9
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCCh
Q 036165 357 LPACASAANMRRGKEIHGCAIVMGVEGD--LHVRSALVDMYAKCGFISEARTLFDKMSERNTVT--WNSMIFGCANHGYC 432 (566)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 432 (566)
...+...++++.|...++.........+ ..+--.|.......|.+++|...++....++-.. ...-...+...|+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 3455666777777766666554321111 1122235556667777777777777766654332 23334566777777
Q ss_pred HHHHHHHHHhhhc
Q 036165 433 DEAIELFNQMEER 445 (566)
Q Consensus 433 ~~A~~~~~~~~~~ 445 (566)
++|..-|++....
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 7777777776665
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.06 E-value=59 Score=34.86 Aligned_cols=222 Identities=12% Similarity=0.009 Sum_probs=121.6
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHH-HHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 036165 290 FSKSGDQVMVSKLFQLMRAKGVEPDV-------VSWTSVIS-GLVHNFCNDEAFDTFKEMLSQG----FCPTSATISSIL 357 (566)
Q Consensus 290 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~ll 357 (566)
.....++.+|..++.++...-..|+. ..|+.+-. .....|++++|+++.+...+.= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567889999998887654223221 13443332 2345788999999888877541 223344566667
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCCCcHhHHH---HH--HHHHHhcCC--HHHHHHHHHhcCC-----C-----ChhHHH
Q 036165 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRS---AL--VDMYAKCGF--ISEARTLFDKMSE-----R-----NTVTWN 420 (566)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~g~--~~~A~~~~~~~~~-----~-----~~~~~~ 420 (566)
.+..-.|+++.|..+.....+..-..+...+. .+ ...+...|+ ..+....|..... . -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77888899999998887776643223333332 22 233455663 3333333433321 1 223344
Q ss_pred HHHHHHHhc-CChHHHHHHHHHhhhcCCCCHH----HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHH
Q 036165 421 SMIFGCANH-GYCDEAIELFNQMEERKKLDHL----SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYAC 491 (566)
Q Consensus 421 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 491 (566)
.+..++.+. +...++..-++--.. ..|... .+..|+......|++++|...++++... ...+. ......
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~ 662 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHH
Confidence 444555442 122222222222222 222222 2336677888899999999999888765 33332 112222
Q ss_pred HHH--HHHhcCCHHHHHHHHHhcC
Q 036165 492 MVD--LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 492 l~~--~~~~~g~~~~A~~~~~~~~ 513 (566)
.+. .-...|+.++|.....+-.
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhcc
Confidence 222 2346788888887777643
No 334
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.89 E-value=34 Score=31.99 Aligned_cols=152 Identities=12% Similarity=0.013 Sum_probs=105.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCH
Q 036165 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM---GVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
...+|+..+|-..++++++. .+.|...+...=.+|...|+.+.....++++... +++....+...+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 44578888888888888875 4666677777777888888888888888877653 2222333344555566789999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCH---HHHHHHHHHHhccCChHHHHHHHH
Q 036165 402 SEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH---LSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
++|++.-++..+ .|..+-.+....+...|++.++.+...+-... ...+. ..|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999988776 34445566667777789999998887776554 21111 223334445566789999999987
Q ss_pred HhH
Q 036165 475 MMQ 477 (566)
Q Consensus 475 ~~~ 477 (566)
.=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 643
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.89 E-value=44 Score=33.28 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHH
Q 036165 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMI 423 (566)
Q Consensus 347 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 423 (566)
..|..-+.+++..+.......-.+.+-.++...|- +...+..++.+|... ..+.-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 45666677777777777777777777777777653 456677778888777 55666677776554 3444444444
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCC---CH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKL---DH---LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
.-|.+ ++.+.+...|.++.....| +. ..|.-+... -..+.+....+...+....|...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 7778888888888777333 11 134444432 145667777777777766565555556666667777
Q ss_pred hcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 036165 498 RAGRLAEAYEMIKTMST--EPDLFVWGALLGAC 528 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~ 528 (566)
...++++|.+++..+.. +.|......++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 78888888888887762 34454545555443
No 336
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.88 E-value=3 Score=23.70 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=11.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhH
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
|..+..++...|++++|+..|++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4444444444444444444444444
No 337
>PRK10941 hypothetical protein; Provisional
Probab=84.19 E-value=11 Score=34.66 Aligned_cols=69 Identities=12% Similarity=-0.006 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHH
Q 036165 490 ACMVDLLGRAGRLAEAYEMIKTMS-T-EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558 (566)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 558 (566)
+.+-.+|.+.++++.|+++.+.+. . +.++.-+..-.-.|.+.|.+..|..-++..++.-|++|.+-..-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 345566777788888888877776 2 33455666666667788888888888888888778777765543
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.82 E-value=10 Score=34.94 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=64.7
Q ss_pred CCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC-CCc-----chHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcch
Q 036165 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPK-TNI-----HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181 (566)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 181 (566)
|.+....+...++..-....+++++...+-++.. ++. .+-.+.++.+ -.-++++++.++..=.+.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 4334444444455555555677777776655543 211 1111223333 33467788888888888888888888
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHcC
Q 036165 182 IPSVLKACGHLSDIGTGEKIHSLVLKHS 209 (566)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g 209 (566)
++.+|+.+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888877776654
No 339
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.55 E-value=9 Score=28.67 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 434 EAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 434 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+..+-+..+... ..|++....+.+++|-+.+++..|.++++.++.+-| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 344445555554 667777777777777777777777777777776533 22335655543
No 340
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.28 E-value=3.7 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=10.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHhH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
..+..++...|++++|++.+++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444444444444444444444
No 341
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.27 E-value=37 Score=31.18 Aligned_cols=113 Identities=12% Similarity=0.166 Sum_probs=65.7
Q ss_pred CChHHHHHHHHHhHH-CCCCCCcchHHHHHHHHcc-cC-ChhHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHH
Q 036165 158 GYHQEAVTVFHEMHI-QGLKQNIFVIPSVLKACGH-LS-DIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVEKA 233 (566)
Q Consensus 158 g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~A 233 (566)
....+|+++|+.... ..+--|..+...+++.... .+ ....--++.+.+.. .|-.++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 334556666553221 1233455555555555433 11 23333344444432 23356666777778888888888888
Q ss_pred HHHHHhcCC-----CChhhHHHHHHHHHHcCChhHHHHHHHH
Q 036165 234 KKVFDEMVE-----KDIVAMNAMVSGYVQRGLATEALNLVEE 270 (566)
Q Consensus 234 ~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~ 270 (566)
.++++.... .|...|..+|....+.|+..-...++++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888777632 3667788888888888887666665554
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.21 E-value=2.3 Score=22.63 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 036165 491 CMVDLLGRAGRLAEAYEMIK 510 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~ 510 (566)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444455555555544443
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.08 E-value=8.5 Score=28.46 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 434 EAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 434 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
++.+-+..+... ..|++....+.+++|-+.+|+..|.++++.++.+.| .+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 444455555555 677777777777777777777777777777765422 2334555544
No 344
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=82.80 E-value=49 Score=32.26 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
...|+.-|...|++.+|.+.++++.-| ..+.+.+++.+.-+.|+....+.+++..... ...|-+.+-++|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s---glIT~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS---GLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CceeHHHhhhhhh
Confidence 455778888888888888888877654 3456777888888888777666666665443 3334444444443
No 345
>PRK12798 chemotaxis protein; Reviewed
Probab=82.71 E-value=49 Score=32.16 Aligned_cols=165 Identities=19% Similarity=0.205 Sum_probs=98.1
Q ss_pred cCCHHHHHHHHHhcCC----CChhHHHHHHHHH-HhcCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCChHHH
Q 036165 398 CGFISEARTLFDKMSE----RNTVTWNSMIFGC-ANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a 469 (566)
.|+.+++.+.+..+.. +....+-.|+.+- ....++.+|+++|+...-..|-+. ...---+-.....|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5788888888877764 3444565665543 345678888888887765433322 2333344456678888888
Q ss_pred HHHHHHhHHhcCCCCChhHHH-HHHHHHHhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 470 QRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAG---RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
..+-.+...+|...|=...|. .++.++.+.+ +.+.-..++..|...-....|..+.+.-.-.|+.+-|...-++++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 777777776654444332222 2333333333 334445555555422335677777788888888888888888888
Q ss_pred hhCCCCchHHHHHHHHHh
Q 036165 546 ELEPESAANNMLLTDLYA 563 (566)
Q Consensus 546 ~~~p~~~~~~~~l~~~~~ 563 (566)
.+.+ ....-...+.+|.
T Consensus 285 ~L~~-~~~~~~~ra~LY~ 301 (421)
T PRK12798 285 KLAD-PDSADAARARLYR 301 (421)
T ss_pred Hhcc-CCCcchHHHHHHH
Confidence 7653 2333444445543
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.55 E-value=23 Score=28.24 Aligned_cols=79 Identities=11% Similarity=-0.018 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHH---HHHHHHhcCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLAE---AYEMIKTMST--EP--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
.++..+--.+.+++.+..+.++ -..++++... .| ......-|.-++.+.|+++++.++.+..++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4555566667777777665443 4556665542 22 222334445667888888888888888888888888776
Q ss_pred HHHHHH
Q 036165 556 MLLTDL 561 (566)
Q Consensus 556 ~~l~~~ 561 (566)
.+=-.|
T Consensus 109 ~Lk~~i 114 (149)
T KOG3364|consen 109 ELKETI 114 (149)
T ss_pred HHHHHH
Confidence 654443
No 347
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.54 E-value=7.7 Score=31.43 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 502 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
-+.|.++.+-|. ...............|+++-|.++.+.++..+|+|..+....+++|.+.|
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 355666666664 44555556666788999999999999999999999999999999987653
No 348
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.75 E-value=3.9 Score=22.72 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 532 GNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 532 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
|+.+.|..+++++++..|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999888888888888777654
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.60 E-value=53 Score=31.80 Aligned_cols=53 Identities=9% Similarity=-0.037 Sum_probs=26.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCC-CHHHHHHHHHHH-hccCChHHHHHHHHHh
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTAC-CHVGLVELGQRLFNMM 476 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 476 (566)
..+.+.|-+..|.++.+-+....+. |+.....+|+.| .++++++..+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3444555555555555555554333 444444444433 2445555555555443
No 350
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.31 E-value=11 Score=27.95 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHH
Q 036165 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206 (566)
Q Consensus 161 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 206 (566)
-++.+-++.+......|++....+.+++|.+.+++..|.++++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555555566666666666666666666666666665544
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.19 E-value=3.3 Score=24.78 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHH
Q 036165 145 HRWIALTGAYARRGYHQEAVTVFHEMHI 172 (566)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 172 (566)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887754
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.12 E-value=78 Score=33.41 Aligned_cols=49 Identities=8% Similarity=-0.153 Sum_probs=26.3
Q ss_pred HhcCChhHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHHccCchHHHHHHHH
Q 036165 326 VHNFCNDEAFDTFKEMLSQGF-CPT-------SATISSILPACASAANMRRGKEIHG 374 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~~~-~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (566)
+-.+++..|...++.|.+..- .|+ ...+....-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 346778888888888765321 111 1112222223335566777777765
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.03 E-value=3.9 Score=34.28 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
-+++|+.-+++++.++|+...++..+|+.|..+
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 357788888888899999999999999998765
No 354
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.68 E-value=55 Score=31.43 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP---DVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 280 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
..++..+...+.+.|.++.|...+..+...+... ++...-.-+......|+..+|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555666666666666666666655432111 223333344455556666666666666555
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.51 E-value=15 Score=31.58 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHH
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS------TEPDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A 537 (566)
+.|.+.|-.+... +.--++.....|...|. ..+.++|..++.++. .++|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444433 22233444444443333 234444444444333 134445555555555555555444
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.50 E-value=15 Score=27.54 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036165 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309 (566)
Q Consensus 262 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (566)
-+..+-++.+....+.|++......+++|.+.+++..|.++++.++..
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355666777777778888888888888888888888888888887654
No 357
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=80.08 E-value=12 Score=27.06 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHH
Q 036165 97 GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAV 164 (566)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 164 (566)
+..+++.+++.|+ .+....+.+-..-...|+.+.|+++++.++ +....|..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5667777777774 344444444444446688889999999888 88888888998888887765554
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.06 E-value=28 Score=30.05 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM---GVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
+.|...|-++...+.--++.. ...+..|....+.+++..++....+. +-.+++.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~el-q~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAEL-QYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHH-HHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666655553333333 33333333355566666666655542 22456777777777777777777664
No 359
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.24 E-value=13 Score=31.76 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=54.9
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CC------hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC
Q 036165 394 MYAKCGFISEARTLFDKMSE--RN------TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL 465 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (566)
-+.+.|++++|..-|..... |. .+.|..-..++.+.+.++.|+.-..+.++..+........-..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 34566777777666665543 21 22344445566677777777777777766655555555555567777777
Q ss_pred hHHHHHHHHHhHHh
Q 036165 466 VELGQRLFNMMQEK 479 (566)
Q Consensus 466 ~~~a~~~~~~~~~~ 479 (566)
+++|++-++.+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888777754
No 360
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.62 E-value=93 Score=32.81 Aligned_cols=89 Identities=9% Similarity=0.038 Sum_probs=44.1
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHh--
Q 036165 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSVISGLVH-- 327 (566)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 327 (566)
....+.-.|.++.|++.+-+ ..+...+.+.+...+..+.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34566778999999998876 3344667777777666654433222211 2221110 11122557778888876
Q ss_pred -cCChhHHHHHHHHHHHC
Q 036165 328 -NFCNDEAFDTFKEMLSQ 344 (566)
Q Consensus 328 -~g~~~~A~~~~~~m~~~ 344 (566)
..++.+|+++|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 45778888888766543
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.46 E-value=9.4 Score=33.11 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
..|++.++..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 467888888888888888888888888888888877
No 362
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.66 E-value=50 Score=32.28 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=24.3
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHH--HHHHHHHHH--hccCChHHHHHHHHHhHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHL--SFTAVLTAC--CHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 478 (566)
..+++..|.++++.+....+++.. .+..+..+| -..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566666666665554232222 223333332 234455566666655544
No 363
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.61 E-value=37 Score=27.68 Aligned_cols=65 Identities=8% Similarity=0.031 Sum_probs=35.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHH
Q 036165 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTWNSMIFGCA 427 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~ 427 (566)
..++.+++..++..+.-..+. ....-..-.-.+...|++++|.++|+++.+.. ...|..-+.++|
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 355566666666655543322 12222223445667788888888888887633 224444444433
No 364
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.55 E-value=32 Score=27.97 Aligned_cols=78 Identities=8% Similarity=0.088 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHhccCCC---------CCcchHHHHHHHHHhcCC-hHHHHHHHHHhHHCCCCCCcchHHH
Q 036165 115 IATKLITFYTECQNIHHARMLFDEIPK---------TNIHRWIALTGAYARRGY-HQEAVTVFHEMHIQGLKQNIFVIPS 184 (566)
Q Consensus 115 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ 184 (566)
..|.++.-.+..+++.....+++.+.. .+..+|..++.+.+...- --.+..+|..|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356666666666666666666665532 345567777777755544 3356777777777777777777777
Q ss_pred HHHHHccc
Q 036165 185 VLKACGHL 192 (566)
Q Consensus 185 ll~~~~~~ 192 (566)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776543
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.40 E-value=37 Score=27.60 Aligned_cols=77 Identities=6% Similarity=0.140 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---------CCChhhHHHHHHHHHHcCC-hhHHHHHHHHhhhCCCCccHHHHHHH
Q 036165 217 VSSLIDMYSKCGSVEKAKKVFDEMV---------EKDIVAMNAMVSGYVQRGL-ATEALNLVEEIGTPRVKPNVVTWNTL 286 (566)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 286 (566)
.|.++.-....+.+...+.+++.+. ..+-.+|++++.+..+..- ---+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555555555555555555541 1233455566655544433 22344555555555556666666666
Q ss_pred HHHHhcC
Q 036165 287 ISGFSKS 293 (566)
Q Consensus 287 l~~~~~~ 293 (566)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6655543
No 366
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.38 E-value=68 Score=30.54 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---cCCHHHHHHHH
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR---AGRLAEAYEMI 509 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 509 (566)
+.-+.+++++.+..+.+......++..+.+..+.+...+-++++... .+-+...|...++.... .-.+++...+|
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 45566777777765666667777777777777777777778877764 22356667666655443 22355555555
Q ss_pred HhcC-------CC--------C--CHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 510 KTMS-------TE--------P--DLF---VWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 510 ~~~~-------~~--------p--~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
.+.. .. + +.. ++..+..-+..+|..+.|..+++.+++.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 4432 11 1 111 22223334568899999999999999865
No 367
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.03 E-value=4.6 Score=35.23 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=39.6
Q ss_pred HHHhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 495 LLGRAGRLAEAYEMIKTMS-T-EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
+..+.|+.+.|.+++.++. . ......|--+...-.+.|+.+.|.+.+++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455677777777777766 2 23455677777777777888888888888887777653
No 368
>PRK10941 hypothetical protein; Provisional
Probab=76.52 E-value=8.8 Score=35.17 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+.+-.+|.+.++++.|.+..+.++...|+++.-...-|-+|.+.|
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~ 229 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD 229 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4666688999999999999999999999999999999999998765
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.08 E-value=65 Score=29.65 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh----cCCCCChhHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK----YKIMPRTEHY 489 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~ 489 (566)
++.....|...|.+.+|.++.++.....+.+...+-.++..+...||--.+.+-++++.+. .|+..+..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444556777888888888888877777777777888888888888766666666555332 3555544433
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.72 E-value=31 Score=25.82 Aligned_cols=87 Identities=11% Similarity=0.110 Sum_probs=54.6
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhh
Q 036165 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273 (566)
Q Consensus 194 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 273 (566)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+.+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356666666666554321 22222233455677888888888888888888888876643 356666666676777766
Q ss_pred CCCCccHHHHH
Q 036165 274 PRVKPNVVTWN 284 (566)
Q Consensus 274 ~~~~p~~~~~~ 284 (566)
.| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 66 45554443
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.70 E-value=5.8 Score=24.53 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHC
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQ 173 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~ 173 (566)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556677777777777777776654
No 372
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.67 E-value=8.3 Score=21.72 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=13.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
|..+...+...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555443
No 373
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.45 E-value=6.6 Score=21.87 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=10.4
Q ss_pred HHHHhccCChHHHHHHHHHhHH
Q 036165 457 LTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 457 ~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..++.+.|++++|.+.|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444455555555544444
No 374
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.42 E-value=70 Score=29.30 Aligned_cols=157 Identities=12% Similarity=0.074 Sum_probs=73.9
Q ss_pred cCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh----HHCCCCCCcchHHHHHHHHcccCCh-hHHHH
Q 036165 126 CQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM----HIQGLKQNIFVIPSVLKACGHLSDI-GTGEK 200 (566)
Q Consensus 126 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~ 200 (566)
.+++++|.+++- .=...+.+.|+...|.++-.-| .+.+.++|......++..+...+.- .+-.+
T Consensus 3 ~kky~eAidLL~-----------~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLY-----------SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHH-----------HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 455666666543 2234455666666555544333 3345666666555555555433321 12233
Q ss_pred HHHHHHH---cCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCC
Q 036165 201 IHSLVLK---HSF--GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 201 ~~~~~~~---~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
+.+.+++ .|- .-++.....+...+.+.|++.+|+..|-.-..++...+-.++......|...++
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------- 140 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------- 140 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H-----------
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch-----------
Confidence 3333332 221 235667778888888888888888777655444443333333333333333322
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036165 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308 (566)
Q Consensus 276 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 308 (566)
+...-..++ -|...++...|...++...+
T Consensus 141 ---dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ---DLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ---HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 121122222 34456777777777766544
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.05 E-value=9 Score=23.69 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=12.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 036165 321 VISGLVHNFCNDEAFDTFKEMLSQ 344 (566)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~ 344 (566)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 376
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.00 E-value=1e+02 Score=30.63 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=67.9
Q ss_pred HHhcCChHHHHHHHHHhhhcCCC----C-----HHHHHHHHHHHhccCChHHHHHHHHHhHHh------cCCCCCh----
Q 036165 426 CANHGYCDEAIELFNQMEERKKL----D-----HLSFTAVLTACCHVGLVELGQRLFNMMQEK------YKIMPRT---- 486 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~p~~---- 486 (566)
+--.|++.+|.+++-..--...+ . -..+|.+.-.....|.+.-+..+|.++... .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44578888888877654332111 1 112466655566777777777777776641 2555542
Q ss_pred -------hHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhc
Q 036165 487 -------EHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNH 531 (566)
Q Consensus 487 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 531 (566)
.+|| ..-.|...|++-.|.+.|.+.. ...++..|..|..+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1233 2345778899999999988876 567889999999988743
No 377
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.51 E-value=80 Score=29.09 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=29.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (566)
...+.|..+|.+.+|.++-+..+.-+ +.+...+-.++..+...|+--.+..-++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 33455566666666666666655443 3444555555566666665444444333
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.30 E-value=9.6 Score=26.99 Aligned_cols=47 Identities=11% Similarity=0.052 Sum_probs=21.4
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEM 508 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 508 (566)
.....++|+..|..+.++..-.|+ -.++..++.+|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544111111 12344455555555555555443
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.92 E-value=1.1e+02 Score=30.53 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHH-HcccCChhHHHHHHHHHHHc
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA-CGHLSDIGTGEKIHSLVLKH 208 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~ 208 (566)
|+..|...+..+.+.+.+.+.-.+|.+|... .+-++..|.....- +-...+++.|+.++...++.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 5555666665555555566666666666554 12222233222221 11222355566665555554
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.43 E-value=18 Score=21.18 Aligned_cols=32 Identities=16% Similarity=-0.007 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHhhhCCCC
Q 036165 520 VWGALLGACKNHGNIELAEIA--AKHLSELEPES 551 (566)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p~~ 551 (566)
-|..+...+...|++++|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355666677788888888888 44665666543
No 381
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.09 E-value=1.5e+02 Score=31.53 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=90.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCCh
Q 036165 84 RIEIYIRDRALQSGKILHAQLIVSGLAR---LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160 (566)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 160 (566)
-++-+.+.+.+++|..+.+... |..+ ...+...+|..+.-.|++++|-...-.|-..+..-|.--+..+...++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 3444555666666666544332 2223 4467788888888899999999998888888888888888888877776
Q ss_pred HHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcC-------------------CCCchhHHHHHH
Q 036165 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS-------------------FGTDAFVVSSLI 221 (566)
Q Consensus 161 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-------------------~~~~~~~~~~l~ 221 (566)
.....+ +.......+...|..++..+.. .+.. ..++...+.. ..-+......|+
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 544333 2222223456677777777655 2211 1111111100 011222334466
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCh
Q 036165 222 DMYSKCGSVEKAKKVFDEMVEKDI 245 (566)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~~ 245 (566)
..|...+++++|..++-.+.++++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHccChHHHHHHHHhccChHH
Confidence 777777777777777766655543
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.13 E-value=63 Score=29.53 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=52.0
Q ss_pred HHHHHHHcCChhHHHHHHHHhhh--CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 036165 251 MVSGYVQRGLATEALNLVEEIGT--PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH- 327 (566)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 327 (566)
=|.+++..++|.+++...-+--+ ..++|. ....-|-.|.+.++...+.++-..-....-.-+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 36677778888887765544433 223333 3334445577788887777777766554323334446666655544
Q ss_pred ----cCChhHHHHHH
Q 036165 328 ----NFCNDEAFDTF 338 (566)
Q Consensus 328 ----~g~~~~A~~~~ 338 (566)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57778877766
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.99 E-value=11 Score=26.71 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=31.8
Q ss_pred hcCChHHHHHHHHHhhhcC--CCCH-HHHHHHHHHHhccCChHHHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERK--KLDH-LSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
..++.++|+..|+...+.. +++. .++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888887772 2222 25677778888888888777653
No 384
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.21 E-value=93 Score=28.51 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=32.9
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhCCCCccHHHH-------HHHHHHHhcCCCHHHHHH
Q 036165 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW-------NTLISGFSKSGDQVMVSK 301 (566)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~ll~~~~~~~~~~~a~~ 301 (566)
+.+-..+.+++++|+..+.++...|+..|..+. ..+...|.+.|+.....+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 445566778888888888888888877665443 344555555555544333
No 385
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.97 E-value=24 Score=29.82 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=13.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHH
Q 036165 494 DLLGRAGRLAEAYEMIKTMSTEPDLFV 520 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~p~~~~ 520 (566)
-.|.+.|.+++|.+++++....|+...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~ 145 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQK 145 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchh
Confidence 345555555555555555543444333
No 386
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.60 E-value=1.3e+02 Score=29.88 Aligned_cols=123 Identities=12% Similarity=0.036 Sum_probs=79.4
Q ss_pred HHHHHHhcCChHHHH-HHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCC
Q 036165 84 RIEIYIRDRALQSGK-ILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGY 159 (566)
Q Consensus 84 ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 159 (566)
-+.--...|++..|- +++.-+.+. +.+|.........+...|+++.+...+..... ....+-.++++...+-|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 343344556665554 444444333 33444444455667788999999988866554 455677788888889999
Q ss_pred hHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcC
Q 036165 160 HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209 (566)
Q Consensus 160 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 209 (566)
++.|..+-+-|....+. +...........-..|-++++...|.++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999888876554 33322222222335567888888888877654
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.54 E-value=60 Score=29.67 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHH
Q 036165 397 KCGFISEARTLF 408 (566)
Q Consensus 397 ~~g~~~~A~~~~ 408 (566)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346667766665
No 388
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.48 E-value=98 Score=29.14 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHh------ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 432 CDEAIELFNQMEERKKLDHLSFTAVLTACC------HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
++++..++.+...+..|.+......|.++- ..-+|.....+|+.+... .|++.+--.-.-+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehHHHHHHHhhhHHhH
Confidence 577888888888886788877777776553 233677777788877643 55553322222334444556777
Q ss_pred HHHHHhcCCCCCH---HHH-HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHH
Q 036165 506 YEMIKTMSTEPDL---FVW-GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558 (566)
Q Consensus 506 ~~~~~~~~~~p~~---~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 558 (566)
+.+++....+|.. ..| ..=...+.+.|+.++|...|++++.+.++...-....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8888877644322 223 3333557899999999999999999887776654443
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.83 E-value=35 Score=29.87 Aligned_cols=74 Identities=9% Similarity=0.044 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C----CCCHHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-T----EPDLFVWGALLG 526 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~~~~~~~l~~ 526 (566)
|.+..++.+.+.+...+++.....-++. -+.|...-..+++.|+-.|++++|..-++-.. . .+....|..+++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455667778888899999887766643 24456667788899999999999977766543 2 244566766665
Q ss_pred H
Q 036165 527 A 527 (566)
Q Consensus 527 ~ 527 (566)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.44 E-value=24 Score=30.61 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=19.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...|++.+|..++.++...|+.++|.++.+++.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666666666666666655554
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.58 E-value=2e+02 Score=31.45 Aligned_cols=112 Identities=11% Similarity=0.044 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHhccCCCCC--c-----chHHHHHHHHHhcCCh--HHHHHHHHHhHHCCCCCCc------
Q 036165 115 IATKLITFYTECQNIHHARMLFDEIPKTN--I-----HRWIALTGAYARRGYH--QEAVTVFHEMHIQGLKQNI------ 179 (566)
Q Consensus 115 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-----~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~------ 179 (566)
-|..|+..|...|..++|.+++......+ . ..+..++.-+.+.+.. +-.++.-.........-..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 35567777777777777777776554311 1 1233344444444433 3444443333332111000
Q ss_pred -------chHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 036165 180 -------FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227 (566)
Q Consensus 180 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 227 (566)
..-..++ .+......+.+..+++.++...-.++....+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl-~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVL-NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHH-HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 0111222 2345566777888888887766566777777777777653
No 392
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.23 E-value=1.8e+02 Score=30.82 Aligned_cols=329 Identities=10% Similarity=-0.032 Sum_probs=154.0
Q ss_pred chHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-hhhHHHHHHHHHH
Q 036165 180 FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KD-IVAMNAMVSGYVQ 257 (566)
Q Consensus 180 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~ 257 (566)
..|.....++ +.|++..+.++...+....+ .....|..+.. -......++...++++... |- ...-...+..+.+
T Consensus 35 ~~f~~A~~a~-~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~-~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~ 111 (644)
T PRK11619 35 QRYQQIKQAW-DNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQ-DLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELAR 111 (644)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHhccCCCc-HhHHHHHHHHh-ccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 3455555544 66777777777666532211 11112222221 1123356666666666643 21 2223344556667
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 036165 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337 (566)
Q Consensus 258 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 337 (566)
.+++...++.+.. .+.+...-.....+....|+.++|.+..+.+-..|. ..+...+.++..+.+.|.....
T Consensus 112 ~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~--- 182 (644)
T PRK11619 112 REDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPL--- 182 (644)
T ss_pred ccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHH---
Confidence 7777777763321 133444444566677777887777666655543332 2334444454444444433222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 036165 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD-LHVRSALVDMYAKCGFISEARTLFDKMSERNT 416 (566)
Q Consensus 338 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 416 (566)
..+.. +......|+...|..+...+ .++ ......++..+. +...+...+.... ++.
T Consensus 183 -------------d~w~R-~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~ 239 (644)
T PRK11619 183 -------------AYLER-IRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQN---DPNTVETFARTTG-PTD 239 (644)
T ss_pred -------------HHHHH-HHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CCh
Confidence 22211 22223344444444444433 111 112223333322 2333333332221 121
Q ss_pred hHHHHHHHHHH--hcCChHHHHHHHHHhhhcCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHH
Q 036165 417 VTWNSMIFGCA--NHGYCDEAIELFNQMEERKKLDH----LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490 (566)
Q Consensus 417 ~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 490 (566)
..-..++.++. ...+.+.|..++.+......-+. .....+.......+..+++...++..... ..+.....
T Consensus 240 ~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e 316 (644)
T PRK11619 240 FTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLE 316 (644)
T ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHH
Confidence 11111111221 23455777777777654422221 12333433333332245566666554322 22444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.-+..-.+.++++.+...+..|.. .-...-..=+.+++...|+.++|...|+++..
T Consensus 317 ~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 317 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555555677888888888877752 11222223344665667888888888887643
No 393
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.00 E-value=54 Score=24.61 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=36.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT 454 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 454 (566)
+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..+..|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASGDPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344556777777777777776677777665533 2455555555556566555555544443
No 394
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.67 E-value=1.2e+02 Score=28.32 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=36.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----cCCh
Q 036165 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK----CGFISEARTLFDKMSER-NTVTWNSMIFGCAN----HGYC 432 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~ 432 (566)
..+++..+...+......+.. .....+...|.. ..+..+|..+|+...+. .......|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 445556666666655543221 222233333332 23455566666544432 22233333333333 2245
Q ss_pred HHHHHHHHHhhhc
Q 036165 433 DEAIELFNQMEER 445 (566)
Q Consensus 433 ~~A~~~~~~~~~~ 445 (566)
.+|..+|++..+.
T Consensus 130 ~~A~~~~~~Aa~~ 142 (292)
T COG0790 130 VKALKYYEKAAKL 142 (292)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555554
No 395
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.04 E-value=1.2e+02 Score=28.36 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=65.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHh
Q 036165 422 MIFGCANHGYCDEAIELFNQMEERKKLDH--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGR 498 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 498 (566)
+..+-.+.|+..+|.+.|+.+.+..+... .....++.+|....-+.+...++.+.-+. ..+.+. ..|. .++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-slPkSA~icYT---aALL- 355 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SLPKSAAICYT---AALL- 355 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCcchHHHHHH---HHHH-
Confidence 33344457888888888887766533211 23456677777777777666666555432 222221 1122 1111
Q ss_pred cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 499 AGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 499 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
++..+-++. .||..+-..|-.+ -..|.+.+.++.+-+|..|.+..-+-
T Consensus 356 -----K~RAVa~kF--spd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 356 -----KTRAVSEKF--SPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred -----HHHHHHhhc--CchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 223333332 3554443332222 23578888899999999888765543
No 396
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=64.26 E-value=1.4e+02 Score=28.80 Aligned_cols=195 Identities=11% Similarity=0.067 Sum_probs=113.3
Q ss_pred cCChhHHHHHHHHhhh-----CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 036165 258 RGLATEALNLVEEIGT-----PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332 (566)
Q Consensus 258 ~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 332 (566)
.++.+.|++-+-...+ .+...+...+..++..|...++|+.--+.+..+ .-+.|+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~L------------------skkrgqlk 86 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLL------------------SKKRGQLK 86 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHH------------------HHHhhHHH
Confidence 5667777665544432 233445555666777777777776544433332 22344444
Q ss_pred HHHHHH--HHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC---cHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 333 EAFDTF--KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG---DLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 333 ~A~~~~--~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
.|.... +-|.-..-.||..|-..++..+... .+-.+-. -...-..|...+-.+|++++|..+
T Consensus 87 ~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~V-------------tegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~i 153 (439)
T KOG1498|consen 87 QAIQSMVQQAMTYIDGTPDLETKIKLIETLRTV-------------TEGKIYVEVERARLTKMLAKIKEEQGDIAEAADI 153 (439)
T ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHh-------------hcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444321 1122122245555555555443211 1100000 123345677888899999999999
Q ss_pred HHhcCCCChhHHHHH------------HHHHHhcCChHHHHHHHHHhhhc--CCCCHH-----HHHHHHHHHhccCChHH
Q 036165 408 FDKMSERNTVTWNSM------------IFGCANHGYCDEAIELFNQMEER--KKLDHL-----SFTAVLTACCHVGLVEL 468 (566)
Q Consensus 408 ~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-----~~~~l~~~~~~~g~~~~ 468 (566)
+.+.. +.||.++ +..|...+++-.|--+-+++... ..|+.. -|+.+++...+.+.|=.
T Consensus 154 l~el~---VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~ 230 (439)
T KOG1498|consen 154 LCELQ---VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLN 230 (439)
T ss_pred HHhcc---hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhh
Confidence 87764 3444433 45677788898888888888776 455543 48888888888888888
Q ss_pred HHHHHHHhHHhcCCCCCh
Q 036165 469 GQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 469 a~~~~~~~~~~~~~~p~~ 486 (566)
+-+.++.+.....+.-|+
T Consensus 231 v~~~Yraiy~t~~vk~d~ 248 (439)
T KOG1498|consen 231 VCRSYRAIYDTGNVKEDP 248 (439)
T ss_pred HHHHHHHHhcccccccCh
Confidence 888888776542333333
No 397
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.85 E-value=1.8e+02 Score=29.79 Aligned_cols=176 Identities=16% Similarity=0.115 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHh-------cCCC-----------------ChhHHHHH---HHHHHhcCChHHHHH
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDK-------MSER-----------------NTVTWNSM---IFGCANHGYCDEAIE 437 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-----------------~~~~~~~l---~~~~~~~~~~~~A~~ 437 (566)
+...-.+.+++..+|+.+.|..+.++ +..| |...|-++ +..+.+.|-+..|.+
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 44444556677778887666555443 3322 22223332 345566788888888
Q ss_pred HHHHhhhcCCC-CHHHHHHHHHHHh-ccCChHHHHHHHHHhHHhc--CCCCChhHHHHHHHHHHhcCC---HHHHHHHHH
Q 036165 438 LFNQMEERKKL-DHLSFTAVLTACC-HVGLVELGQRLFNMMQEKY--KIMPRTEHYACMVDLLGRAGR---LAEAYEMIK 510 (566)
Q Consensus 438 ~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~ 510 (566)
+.+-+.+..+. |+.....+|+.|+ +..+|...+++++...... ..-|+-..-.+|+..|.+... -+.|...+.
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~ 443 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALL 443 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 87777776433 6777777777653 6677787787777764331 223443333355556655544 345555665
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCCCchHHHHHHHHHhh
Q 036165 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLTDLYAN 564 (566)
Q Consensus 511 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~ 564 (566)
++. +--+.+.+-|+..+.-.. .|...--++.. ..-..+.++..+..+|+.
T Consensus 444 qAl-~~~P~vl~eLld~~~l~~---da~~~~~k~~~~~a~~~e~pal~~lv~lY~~ 495 (665)
T KOG2422|consen 444 QAL-KHHPLVLSELLDELLLGD---DALTKDLKFDGSSAENSELPALMLLVKLYAN 495 (665)
T ss_pred HHH-HhCcHHHHHHHHhccCCc---hhhhhhhcccccccccccchHHHHHHHHHHh
Confidence 554 111223344444432221 11111111111 112235668888888865
No 398
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.75 E-value=1.7e+02 Score=29.12 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=11.6
Q ss_pred CChhHHHHHHHHhhhCCCCcc
Q 036165 259 GLATEALNLVEEIGTPRVKPN 279 (566)
Q Consensus 259 g~~~~a~~~~~~m~~~~~~p~ 279 (566)
.+.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554444
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=62.55 E-value=75 Score=32.83 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=45.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhh--CCCCccHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHcCCCCChhhHHHH
Q 036165 250 AMVSGYVQRGLATEALNLVEEIGT--PRVKPNVVTWNTLISGFSKSGDQVM------VSKLFQLMRAKGVEPDVVSWTSV 321 (566)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 321 (566)
+|..+|..+|++..+.++++.... .|-+.=...+|..++...+.|.++. +.++++.. .+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 677788888888888888877754 2333334566777777777776542 22233222 244466667666
Q ss_pred HHHHHh
Q 036165 322 ISGLVH 327 (566)
Q Consensus 322 i~~~~~ 327 (566)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.30 E-value=1.3e+02 Score=28.46 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhc--CCCCHHH-HHHHHHHHhccCChHHHHHHHHHhHHhcC--CCCChhHHH--HHHHHHHhcCCHHHH
Q 036165 433 DEAIELFNQMEER--KKLDHLS-FTAVLTACCHVGLVELGQRLFNMMQEKYK--IMPRTEHYA--CMVDLLGRAGRLAEA 505 (566)
Q Consensus 433 ~~A~~~~~~~~~~--~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~--~l~~~~~~~g~~~~A 505 (566)
+.-.++|...... .+.|+.. ...++.+.-+.++.++|.++++++.++.. -.|+...|. ....++...|+.+++
T Consensus 55 ~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~ 134 (380)
T KOG2908|consen 55 DLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEI 134 (380)
T ss_pred hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHH
Confidence 3345566655554 3334432 33334444556677888888877766422 234444443 345566677777777
Q ss_pred HHHHHhcC
Q 036165 506 YEMIKTMS 513 (566)
Q Consensus 506 ~~~~~~~~ 513 (566)
.+.+++..
T Consensus 135 kk~ldd~~ 142 (380)
T KOG2908|consen 135 KKLLDDLK 142 (380)
T ss_pred HHHHHHHH
Confidence 77766544
No 401
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=62.24 E-value=1e+02 Score=26.45 Aligned_cols=55 Identities=9% Similarity=0.043 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCC--------------CChhhHHHHHHHHHhcCChhHHHHHHH
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKGVE--------------PDVVSWTSVISGLVHNFCNDEAFDTFK 339 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 339 (566)
+++..|-+.-++.++.++++.+.+..+. +--..-|.....+.+.|..|.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4555666677777777777776553221 122334455555666666666666665
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.93 E-value=60 Score=23.67 Aligned_cols=65 Identities=8% Similarity=0.064 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHH
Q 036165 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 198 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 264 (566)
+.++++.+.+.|+ .+......+-..-...|+.+.|.+++..+. +.+..|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555552 222222222222224466666666666666 6666666666666666654443
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.89 E-value=2.7e+02 Score=31.19 Aligned_cols=154 Identities=17% Similarity=0.035 Sum_probs=90.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH-HHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDE-AIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
++..+....+.++.+.+..+. +.....+++...-.....++...+..+. +...+..+. ..++...-...+.++.
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll--~D~d~~VR~aA~~aLg 800 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALT--GDPDPLVRAAALAALA 800 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHh--cCCCHHHHHHHHHHHH
Confidence 455555566666665554332 2333445666666666666666554332 233333333 3456777777777777
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (566)
..|..+.+...+..+.+ .++..+-...+.++.+.+. +++...+..+...|+..+-...+.++.+.+....+...+
T Consensus 801 ~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L 875 (897)
T PRK13800 801 ELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDAL 875 (897)
T ss_pred hcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 77776555444444443 2455555666777777765 456666666666778777777777777753344566666
Q ss_pred HHHhh
Q 036165 542 KHLSE 546 (566)
Q Consensus 542 ~~~~~ 546 (566)
..+++
T Consensus 876 ~~al~ 880 (897)
T PRK13800 876 TTALT 880 (897)
T ss_pred HHHHh
Confidence 66665
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.15 E-value=59 Score=24.08 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 036165 528 CKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~ 545 (566)
....|++++|...+++++
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 444455555555555554
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.50 E-value=1.7e+02 Score=28.47 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 216 VVSSLIDMYSKCGSVEKAKKVFDEMVE------KDIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
.+.-+.+.|..+|+++.|.+.+.+..+ ..+..|-.+|..-.-.|+|........+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 345556666666666666666666422 122344455555555566655555555544
No 406
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.46 E-value=36 Score=30.29 Aligned_cols=103 Identities=13% Similarity=-0.005 Sum_probs=72.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhc-----CCCCChh-----------HHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKY-----KIMPRTE-----------HYACMVDLLGRAGRLAEAYEMIKTMS--T 514 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 514 (566)
...=.+-+.+.|++.+|...+.+++... .-+|... .+..+-.++...|++-++++...++. .
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 3334456889999999999998765320 1233322 23344567778899999999888887 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+.++..|..-..+....-+.++|.+-+.++++++|.-..+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 34666777666777777789999999999999998654443
No 407
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.16 E-value=1.3e+02 Score=27.06 Aligned_cols=39 Identities=10% Similarity=-0.038 Sum_probs=18.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 360 (566)
+..+-+.|+++++...++++...+...+..-.+.+..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 344445555555555555555554444444444444443
No 408
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.47 E-value=62 Score=24.84 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHH
Q 036165 146 RWIALTGAYARRGYHQEAVTVFHEMHI 172 (566)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 172 (566)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999998876
No 409
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.43 E-value=79 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEE 444 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 444 (566)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466666667777777777777776665
No 410
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.17 E-value=1.1e+02 Score=27.31 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=31.9
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHhcCChHHH
Q 036165 360 CASAANMRRGKEIHGCAIVMGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMSE--RNTV-TWNSMIFGCANHGYCDEA 435 (566)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A 435 (566)
|.....++.|..-+.+.+.. .|+. ..|..-+.++.+..+++.+..--.+..+ ||.+ ....+.....+...+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 33334445555444443332 2222 2223333344444444444433333332 2222 122233333444445555
Q ss_pred HHHHHHh
Q 036165 436 IELFNQM 442 (566)
Q Consensus 436 ~~~~~~~ 442 (566)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555444
No 411
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.46 E-value=2.7e+02 Score=30.17 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=25.8
Q ss_pred HHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 036165 121 TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEM 170 (566)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 170 (566)
..|...|+++.|.+.-..-+..-...+-.=...+.+.+++..|.+++.++
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 44556666666665544331100011222234555666777777777766
No 412
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.40 E-value=72 Score=23.49 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=28.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCC
Q 036165 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE----PDLFVWGALLGACKNHGN 533 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~l~~~~~~~g~ 533 (566)
+.|...--.+...+...|++++|++.+-++... -+...-..++..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 335566667777778888888887777666521 123344455555544444
No 413
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=56.23 E-value=82 Score=24.88 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF-VWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
..+-.++.-++.-.|..++|.++++...=-+.-. .=..++..|.+..+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445566666666777777777766654222222 2234566666666666665555443
No 414
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.60 E-value=95 Score=23.72 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 193 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
...++|..+.+.+...+- ....+--.-+..+.+.|++++|+..=.....||...|-+|- -.+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 346777777777776653 22233333445567788888884444444556777776553 456777777777777776
Q ss_pred hCCCCccHHHH
Q 036165 273 TPRVKPNVVTW 283 (566)
Q Consensus 273 ~~~~~p~~~~~ 283 (566)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 4444444
No 415
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.31 E-value=52 Score=20.76 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=21.5
Q ss_pred HHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 036165 255 YVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288 (566)
Q Consensus 255 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 288 (566)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666667777777776776666666655543
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.27 E-value=85 Score=26.72 Aligned_cols=63 Identities=13% Similarity=0.291 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhhhcCCCC---HHHH-----HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 432 CDEAIELFNQMEERKKLD---HLSF-----TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~---~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
.+.|+.+|+.+.+..+++ .... ...+-.|.+.|.+++|.+++++..+. |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d----~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD----PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----CCchhHHHHHHHHHH
Confidence 678999999998874432 2222 33445799999999999999998753 454443433333333
No 417
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.01 E-value=2.3e+02 Score=27.99 Aligned_cols=75 Identities=11% Similarity=-0.028 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
...|+.-|...|+..+|.+..+++---.-.....+.+++.+.-+.|+-.....+++..-.. ...|-+.+-.+|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhhhhh
Confidence 3456777778888888887777664322223456777777777777766666666655544 23344455555543
No 418
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.93 E-value=25 Score=32.30 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 498 RAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+.|+.++|..+|+.+. ..| ++.....+......+++.-+|-+.|-+++.+.|.+..++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 3444444444444433 112 233333333333333444444455555554444444443
No 419
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.30 E-value=1e+02 Score=23.60 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
.++|..|.+.+...+. ....+-..-+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4455555555544433 122222333444556667776633333333366666654432 3556666666666655544
Q ss_pred CCCCHHH
Q 036165 446 KKLDHLS 452 (566)
Q Consensus 446 ~~~~~~~ 452 (566)
..|....
T Consensus 99 g~~~~q~ 105 (116)
T PF09477_consen 99 GSPELQA 105 (116)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 4443333
No 420
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.23 E-value=1.7e+02 Score=26.30 Aligned_cols=96 Identities=8% Similarity=-0.138 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-------CCCCHH-----------HHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEER-------KKLDHL-----------SFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
+.+...-.+-+.+.|++.+|..-|.+.... .+|... .+..+-.++...|++-++++...++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555566778899999999999886532 233222 24445567778899999999999888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.. .+-+...|-.-..+.+..=+.++|..-|.++.
T Consensus 258 ~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 258 RH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred hc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 64 34566677666677777778889988888776
No 421
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.17 E-value=1.9e+02 Score=26.69 Aligned_cols=121 Identities=12% Similarity=0.158 Sum_probs=62.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHccCchHHHHHHHHHH----HHhCCCCcHhHHHH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-------ISSILPACASAANMRRGKEIHGCA----IVMGVEGDLHVRSA 390 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ 390 (566)
.+-..+.+++++|+..+.+.+..|+..|..+ ...+...|.+.|+.....+..... ....-+....+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445566777788888888777776666543 445566666666655544433221 22222223444555
Q ss_pred HHHHHHhc-CCHHHHHHHHHhcCC----CCh-----hHHHHHHHHHHhcCChHHHHHHHHHh
Q 036165 391 LVDMYAKC-GFISEARTLFDKMSE----RNT-----VTWNSMIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 391 l~~~~~~~-g~~~~A~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~ 442 (566)
+++.+-.. ..++..+.+.....+ .+. ..-.-++..+.+.|.+.+|+.+...+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55555432 334555555544332 111 11123455566666666666654443
No 422
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=52.28 E-value=2.2e+02 Score=27.15 Aligned_cols=98 Identities=5% Similarity=-0.053 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHccCc------------hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 036165 347 CPTSATISSILPACASAAN------------MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE- 413 (566)
Q Consensus 347 ~~~~~~~~~ll~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 413 (566)
+-|..++..++..--..-. .+.-..+++++++.++ .+......++..+.+..+.++..+.++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666666653322211 2333455666665533 3455555566666666666666666665554
Q ss_pred -C-ChhHHHHHHHHHHh---cCChHHHHHHHHHhhhc
Q 036165 414 -R-NTVTWNSMIFGCAN---HGYCDEAIELFNQMEER 445 (566)
Q Consensus 414 -~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~ 445 (566)
| +...|...+..... .-.++....+|.+..+.
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 2 34445555443332 22355555555554443
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.95 E-value=1.2e+02 Score=24.08 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 468 LGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
.+.++|+.|..+ |+.-. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555555555554 44322 34455555555555555555555543
No 424
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.89 E-value=1.9e+02 Score=27.03 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHH----------HcCChhHHHHHH
Q 036165 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYV----------QRGLATEALNLV 268 (566)
Q Consensus 199 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~a~~~~ 268 (566)
.++++.+.+.++.|.-..+.-+.-.+...=.+.+++.+++.+.... .-|..|+..|| -.|++...++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4566677777777777776666666666667777777777774321 11333443333 357777777776
Q ss_pred HH
Q 036165 269 EE 270 (566)
Q Consensus 269 ~~ 270 (566)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 64
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.82 E-value=41 Score=22.67 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 036165 320 SVISGLVHNFCNDEAFDTFKEML 342 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~ 342 (566)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555543
No 426
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.68 E-value=82 Score=24.84 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=23.8
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHH
Q 036165 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206 (566)
Q Consensus 164 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 206 (566)
.+-++.+..-++.|++......+++|.+.+++..|.++++-+.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444555566666666666666666666666655544
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.93 E-value=31 Score=31.84 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHH
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 284 (566)
-|+..|....+.||+++|+.++++.+..|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36678888888888888888888888777655444543
No 428
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.71 E-value=24 Score=23.75 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.++.+|...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555555555443
No 429
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.64 E-value=50 Score=33.51 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCCc--hHHHHHHHHHHhh-cCChHHHHHHhccCCC----CC-cchHHHHHHHHHhcCChHHHHHHHHHhH
Q 036165 100 LHAQLIVSGLARL--TQIATKLITFYTE-CQNIHHARMLFDEIPK----TN-IHRWIALTGAYARRGYHQEAVTVFHEMH 171 (566)
Q Consensus 100 ~~~~~~~~~~~~~--~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 171 (566)
+...++..|.... ...+..+..+|.+ .|+..+|......... .+ -....++...+.+.|...+|--++....
T Consensus 197 ~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~ 276 (886)
T KOG4507|consen 197 DIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAAL 276 (886)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhc
Confidence 3444444444322 2333444455543 4666666555433221 11 1123445555666666666655554443
Q ss_pred HCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcC
Q 036165 172 IQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209 (566)
Q Consensus 172 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 209 (566)
....... ..+-.+-++++..+.+.....-|+...+.|
T Consensus 277 ~dA~~~t-~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 277 DDADFFT-SNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred cCCcccc-ccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 3211000 012233444444555555555555555443
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.88 E-value=27 Score=32.18 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHH
Q 036165 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIP 183 (566)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 183 (566)
-|+..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36788888888888888888888888887654333443
No 431
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.71 E-value=2.2e+02 Score=26.53 Aligned_cols=71 Identities=27% Similarity=0.378 Sum_probs=31.7
Q ss_pred CchhHHHHHH-HHHHhcCC-HHHHHHHHHhcC-CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 036165 212 TDAFVVSSLI-DMYSKCGS-VEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS 288 (566)
Q Consensus 212 ~~~~~~~~l~-~~~~~~g~-~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 288 (566)
|...+++.|. +.+.+.|- ..-|.++|.... ++| .+.+++.+-+.+.-+.-+++ .+|+..+-.....
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak 231 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAK 231 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHH
Confidence 3344444443 23334442 334556666552 233 34555555554444443333 2566555444444
Q ss_pred HHhcC
Q 036165 289 GFSKS 293 (566)
Q Consensus 289 ~~~~~ 293 (566)
.+...
T Consensus 232 ~Ft~a 236 (412)
T KOG2297|consen 232 YFTDA 236 (412)
T ss_pred HHhHh
Confidence 44433
No 432
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.59 E-value=1.3e+02 Score=23.65 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--------CC-CCHHHHHHHH----HHHHhcCCHHHHHHHHHHHhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS--------TE-PDLFVWGALL----GACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~-p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~ 546 (566)
..+..|..++...|++++++.--+..+ .. ..-..|-+.+ .++...|..++|...|+.+-+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344556667777777766544333222 22 2334443333 345677888888888877654
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.48 E-value=64 Score=29.30 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMST--------EPDLFVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
.+...|.+.|++++|.++|+.+.. .+...+...+..++.+.|+.+......-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455666777777777777766540 12233445555666666666666555433
No 434
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.46 E-value=27 Score=32.07 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
..+.|+.++|..+|+.++.+.|+++..+..+|.+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E 161 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE 161 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH
Confidence 458899999999999999999999999998887654
No 435
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.05 E-value=42 Score=31.04 Aligned_cols=66 Identities=8% Similarity=-0.096 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhcC
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...|+..|...+.-..+.|.+.+...++.++..+ .+.|++.|-. -..-|...++++.+..+|.+..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence 3445555555555555556666666666666553 2333333321 1122334455555555555544
No 436
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.50 E-value=1.5e+02 Score=27.74 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh---HHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSE--RNTV---TWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
..+-..+..+-.+.|+..+|.+.|+.+.+ |-.. ....++.++....-+.+...++.+--+.
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33344566666778888888888887765 2111 2234566666655555555555554444
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.29 E-value=68 Score=20.22 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=16.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 357 (566)
+.|-.+++...+++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4445555555555665555555555444443
No 438
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.29 E-value=1.7e+02 Score=27.25 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=21.0
Q ss_pred CChhhHHHHHHH-HHhcCC-hHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcC
Q 036165 76 LSPAAYSERIEI-YIRDRA-LQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127 (566)
Q Consensus 76 ~~~~~~~~ll~~-~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 127 (566)
+++..++.++.- +.+.|- ...+..+|...+... ..+.++..+.+-+
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~ 210 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGK 210 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcC
Confidence 444555555532 222332 234556666554432 2344555555433
No 439
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.12 E-value=2.5e+02 Score=30.43 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=88.5
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
....+|+++.|.+.-.++. +..+|..|+.....+|+.+-|+..|++... |.-|--.|.-.|+.++..++.
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHH
Confidence 4457899999988877764 555799999999999999999999887764 333444566778888877777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+.+..+ -|.. .....-.-.|+.++=.++++....-| ..|.+ ...+|.-++|.++.++.-...
T Consensus 722 ~iae~r----~D~~---~~~qnalYl~dv~ervkIl~n~g~~~--laylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 722 KIAEIR----NDAT---GQFQNALYLGDVKERVKILENGGQLP--LAYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHhh----hhhH---HHHHHHHHhccHHHHHHHHHhcCccc--HHHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 666543 2221 11111223578888888888776333 12211 246788888998888876533
No 440
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.34 E-value=3.6e+02 Score=28.26 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc
Q 036165 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD-IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278 (566)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 278 (566)
....+..|++.+ +.=+.+.-.++++++.. . ...+..++++....|-.....-+.+.+....+.+
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~ 373 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP 373 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH
Confidence 344555555544 34455666667776654 3 5677888888888887776666666666555443
No 441
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=47.19 E-value=3.7e+02 Score=28.42 Aligned_cols=263 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHc------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcCChhHHHHHH
Q 036165 197 TGEKIHSLVLKH------SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK--DIVAMNAMVSGYVQRGLATEALNLV 268 (566)
Q Consensus 197 ~a~~~~~~~~~~------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 268 (566)
.+.++.+.+.+. ....+....-..+--..+.=+.++-.++++++... ....++.+++++...|-...+.-+.
T Consensus 322 ~~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~ 401 (618)
T PF01347_consen 322 NLKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIK 401 (618)
T ss_dssp ---HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHhhhCCCCccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHHhc------------
Q 036165 269 EEIGTPRVKPNVVTWNTLISGFSK-SGDQVMVSKLFQLMRAKGVEPDVV-------SWTSVISGLVHN------------ 328 (566)
Q Consensus 269 ~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~------------ 328 (566)
+.+....+.+....-....-.... .-..+-...+++.+.......+.. ++..++.-++..
T Consensus 402 ~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~ 481 (618)
T PF01347_consen 402 DLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSR 481 (618)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------S
T ss_pred HHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccch
Q ss_pred CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH--hcCCHHHHH
Q 036165 329 FCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA--KCGFISEAR 405 (566)
Q Consensus 329 g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~ 405 (566)
...++....+.......... |.......+.++.+.|.. .....+..........+.......+.++. .....+++.
T Consensus 482 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~ 560 (618)
T PF01347_consen 482 CIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR 560 (618)
T ss_dssp S--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHH
Q 036165 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTAC 460 (566)
Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 460 (566)
.++-.+-.........-+.+|...=+..--..+++.+... ..|+....+.+.+.+
T Consensus 561 ~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 561 EILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
No 442
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.96 E-value=2.7e+02 Score=28.43 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH---HHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhc
Q 036165 389 SALVDMYAKCGFISEARTLFDKMSE--RNTVTWN---SMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCH 462 (566)
Q Consensus 389 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 462 (566)
..++.-|.+.+++++|..++..|.= -....|. .+.+.+.+..--.+.+..++.+... ..|....-.....
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~---- 487 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVL---- 487 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHH----
Confidence 3567788888888888888887761 1222333 2333444444344555555555544 2121111000000
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036165 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
++-+.+ ...-..+...+.|.+++++|..+--++. +...+.-+-......|+.+.|.
T Consensus 488 --------ey~d~V---------~~~aRRfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 488 --------EYRDPV---------SDLARRFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred --------HHHHHH---------HHHHHHHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 000000 0111223445567778888877766554 4445555555555666666554
No 443
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.69 E-value=35 Score=33.60 Aligned_cols=106 Identities=13% Similarity=0.029 Sum_probs=66.4
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCC
Q 036165 423 IFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGR 501 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 501 (566)
...+...+.++.|..++.++++..+.....|..=..++.+.+++..|..=+..+++. .|+. ..|-.=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHH
Confidence 344556677888888888888754444445555557788888888888777777654 3432 223233344455566
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc
Q 036165 502 LAEAYEMIKTMS-TEPDLFVWGALLGACKNH 531 (566)
Q Consensus 502 ~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~ 531 (566)
+.+|+..|+... ..|+..-....+.-|-+.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 777777777665 557766666666555443
No 444
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.29 E-value=27 Score=27.77 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 036165 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKAC 189 (566)
Q Consensus 154 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 189 (566)
....|.-..|..+|++|.+.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999988885 56666543
No 445
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.25 E-value=73 Score=20.66 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=9.0
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~ 513 (566)
-++.+.|++++|.+..+.+.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 34444455555554444444
No 446
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.17 E-value=2.2e+02 Score=25.49 Aligned_cols=120 Identities=10% Similarity=0.088 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCCh
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLV 466 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 466 (566)
...-++.|.+.-++.-|-...+++.+|-. +-.+ +--|.+..+.+---++.+-.... ++-+......++ +...||.
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEPIQ-SRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEPIQ-SRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhhHH-hhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 33445666666666666666655555422 1111 12233333222222222222222 333333344443 3456777
Q ss_pred HHHHHHHHHhHHhcCC-----------CCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 467 ELGQRLFNMMQEKYKI-----------MPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.+|...++.-...+|. .|.+.....++..+. .+++++|.+++.+.
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAEL 264 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 7777777665543332 344444444444433 35677777776664
No 447
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=2.2e+02 Score=25.54 Aligned_cols=119 Identities=3% Similarity=-0.132 Sum_probs=78.3
Q ss_pred HHhcCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 395 YAKCGFISEARTLFDKMSE--RNTV-TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
|....+++.|+..+.+... |++. -|..-+.++.+.++++.+..--.+..+..+........+..+......+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 4445678888888877664 6664 456667788888899988888777777544444456666777788888999999
Q ss_pred HHHHhHHhc---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 472 LFNMMQEKY---KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 472 ~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+.+..... .+.+....+..|..+=...=...+..++.++..
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 998874431 334445556666554333334445555555543
No 448
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.60 E-value=43 Score=30.49 Aligned_cols=67 Identities=13% Similarity=0.025 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMS-T-EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
.+=..|.++++++.|....++.. . .-|+.-+.--.-+|.+.|-...|..-++...+.-|+++..-..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 34457888999999999988876 3 4466677777778899999999999999988888888776543
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.11 E-value=2.2e+02 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLD 449 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 449 (566)
.+.++..+...|+++.|.+.|.-+.+..+.|
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VD 74 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVD 74 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCCCC
Confidence 4445555555555666655555555543333
No 450
>PRK02287 hypothetical protein; Provisional
Probab=43.97 E-value=1.6e+02 Score=24.74 Aligned_cols=59 Identities=15% Similarity=-0.002 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPD-LFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
.+..+++-++.-.|..++|.++++...=-++ ...=..++..|.+..+.++..++-++.+
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3445555666666666666666655431111 1122345566666666666555555444
No 451
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.71 E-value=27 Score=27.78 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred HHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 036165 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 289 (566)
-+.|.-..|..+|..|.+.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456677788888888888888875 5555544
No 452
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.63 E-value=2.3e+02 Score=25.02 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=47.0
Q ss_pred hccCChHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHH-------HHHHHHhcCC---CC----C-HHH
Q 036165 461 CHVGLVELGQRLFNMMQEKY---KIMPR--TEHYACMVDLLGRAGRLAE-------AYEMIKTMST---EP----D-LFV 520 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~---~p----~-~~~ 520 (566)
.....+++|++.+..+.-.. +.+|. ...+..+.+.|...|+.+. |.+.|++... .| + ...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 33445555555554433211 22333 2344556667777776443 4444444331 11 2 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
...+.....+.|+.++|.+.|.+++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3344456778899999999999888643
No 453
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.89 E-value=1.4e+02 Score=22.12 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=8.8
Q ss_pred HHhccCChHHHHHHHHHhH
Q 036165 459 ACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 459 ~~~~~g~~~~a~~~~~~~~ 477 (566)
.....|++++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3344455555554444443
No 454
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=42.81 E-value=2.8e+02 Score=25.73 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=83.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----
Q 036165 326 VHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA----SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK---- 397 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 397 (566)
...+++..+...+......+.. .....+...+. ...+...|..++....+.|.. .....|..+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 4567788899988888764422 33333333333 334678899999977776643 344446666665
Q ss_pred cCCHHHHHHHHHhcCCC-ChhH---HHHHHHHHHhcC-------ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----
Q 036165 398 CGFISEARTLFDKMSER-NTVT---WNSMIFGCANHG-------YCDEAIELFNQMEERKKLDHLSFTAVLTACCH---- 462 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~~-~~~~---~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 462 (566)
..+..+|...|++..+. +... ...+...|.... +...|...|.++..... ......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~--~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGN--PDAQLLLGRMYEKGLGV 203 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcC--HHHHHHHHHHHHcCCCC
Confidence 44889999999887753 3322 333444443321 22356666666665542 2233333333322
Q ss_pred cCChHHHHHHHHHhHHh
Q 036165 463 VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~ 479 (566)
..++++|...|....+.
T Consensus 204 ~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred CcCHHHHHHHHHHHHHC
Confidence 33666777777766665
No 455
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.41 E-value=3.5e+02 Score=26.73 Aligned_cols=137 Identities=15% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHhcCChHHHHHHHHHhHHCCCCCCcch--HHHHHHHHcccCChhHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCC
Q 036165 154 YARRGYHQEAVTVFHEMHIQGLKQNIFV--IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF--VVSSLIDMYSKCGS 229 (566)
Q Consensus 154 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~ 229 (566)
.++.|+.+-+ +.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3456666544 44445677666533 334555556667765 444555666554432 12234566677888
Q ss_pred HHHHHHHHHhcCCCChh---hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHH--HHHHHHHHhcCCCHHHHHHH
Q 036165 230 VEKAKKVFDEMVEKDIV---AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT--WNTLISGFSKSGDQVMVSKL 302 (566)
Q Consensus 230 ~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~ 302 (566)
.+.+..+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 88877777654221110 1122333444556653 3333444555544321 11233444456665544433
No 456
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=41.96 E-value=91 Score=22.62 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHH
Q 036165 97 GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA 163 (566)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 163 (566)
...++..+++.|+ .+... .-..-+...+.+.|.++++.++.++..+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~V-lt~~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGV-FTPDM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCC-CCHHH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4557777777764 22222 222334455688899999999999999999999988887765444
No 457
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=41.85 E-value=3.4e+02 Score=26.41 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhc--CCCCHH----HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-----hH
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEER--KKLDHL----SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-----EH 488 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~ 488 (566)
..|..-+-..|+..+|..++.+..-. +.-+.. ...--++.|...+||-.|.-+-+++..++=-.|+. .-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 34566777899999999998876533 111111 12223567888899999988888887764445654 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKTMSTEP 516 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p 516 (566)
|+.++......+.+=++-+.++..-..|
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhccc
Confidence 7888888888888888888888776333
No 458
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=41.81 E-value=1.6e+02 Score=22.58 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=10.9
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q 036165 422 MIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~ 442 (566)
++..|...++.++|..-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 444455555555555555544
No 459
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.11 E-value=2.6e+02 Score=24.93 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACK 529 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 529 (566)
++.++...|+.+.|..+++.+. ....+......++.. ..+|...||..+.+....+-....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 4445555566666666665542 111122222222233 455666666666665542222345555555554
No 460
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.88 E-value=5.7e+02 Score=28.71 Aligned_cols=48 Identities=10% Similarity=-0.035 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (566)
+...-...+.++.+.|..+.+...+..+...++..+-...+.++.+.+
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 444444455555555544333333333333444444444444444444
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.83 E-value=3.6e+02 Score=26.41 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE------RNTVTWNSMIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 442 (566)
.+.-+.+-|..+|+++.|.+.+.+..+ .-+..|..+|..-...|+|........+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 344556666666666666666666443 11223444444444455555544444433
No 462
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.59 E-value=3.2e+02 Score=25.77 Aligned_cols=80 Identities=6% Similarity=-0.038 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHcCC----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHHcCChhHHHHHHH
Q 036165 195 IGTGEKIHSLVLKHSF----GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDIVAMNAMVSGYVQRGLATEALNLVE 269 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 269 (566)
.+.|.+.+......+. ..++.....++....+.|+.+.-..+++.... .+......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4556666666665321 23444555555556666665554455444432 344455666666666666666666666
Q ss_pred HhhhC
Q 036165 270 EIGTP 274 (566)
Q Consensus 270 ~m~~~ 274 (566)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 65554
No 463
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.40 E-value=4.2e+02 Score=27.12 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (566)
...++.-|.+.+++++|..++..|.=.- .+. -.+.+.+.+.+.+..--++-+..++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3456677788888888888877774221 111 122344445555554344444455555443
No 464
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.26 E-value=4.8e+02 Score=29.57 Aligned_cols=181 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 399 (566)
.+..+|...|...+|+..|.+. ..|+.........+.........+..+...-.... -..-|..+++.+-+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a-~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t------~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSA-LSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELT------ALHYYLKVVRLLEEHN 997 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHH-hhccccHHHHHHHHHHhcCCCCchhcCCCCCchHH------HHHHHHHHHHHHHHhc
Q ss_pred CHHHHHHHHHhcCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCh------
Q 036165 400 FISEARTLFDKMSE-------RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLV------ 466 (566)
Q Consensus 400 ~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------ 466 (566)
..+.+..+-....+ .-..+++++.+-....|.+-+|.+.+-+-.. ...-......++-.++.+|.+
T Consensus 998 ~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd-serrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 998 HAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD-SERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred cHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhccchHHHhhC
Q ss_pred ------HHHHH-HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 467 ------ELGQR-LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 467 ------~~a~~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
++... +++..-.. ........|+.|-..+.+.+++.+|-.+.
T Consensus 1077 pfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred CccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHH
No 465
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.00 E-value=4.1e+02 Score=26.80 Aligned_cols=105 Identities=8% Similarity=-0.122 Sum_probs=69.2
Q ss_pred HHhccCChHHHHHHHHHhHH--hcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhcC----------CCCC----
Q 036165 459 ACCHVGLVELGQRLFNMMQE--KYKIMPRT-----EHYACMVDLLGRAGRLAEAYEMIKTMS----------TEPD---- 517 (566)
Q Consensus 459 ~~~~~g~~~~a~~~~~~~~~--~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~---- 517 (566)
-+.-.|++..|.+++...-- ..|...++ ..||.|.-.+.+.|.+.-+..+|.++. .+|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34567899999988765421 11222221 234667777777888777766666554 1221
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 518 ------LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 518 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
-.......-.|...|++-.|.+-|.++....-.+|-.+..|+..+-
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1222233445778999999999999999988889999999887653
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.57 E-value=2.8e+02 Score=24.71 Aligned_cols=92 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCHHHHH--HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKK--LDHLSFT--AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+|.|+--|.-...+.+|.+.|.+-....+ .+..++. .-|......|+.++|++......-. -+..|...+-.|..
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~ 107 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQ 107 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHH
Q ss_pred H----HHhcCCHHHHHHHHHh
Q 036165 495 L----LGRAGRLAEAYEMIKT 511 (566)
Q Consensus 495 ~----~~~~g~~~~A~~~~~~ 511 (566)
. +.|.|..++|+++.+.
T Consensus 108 q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 108 LHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
No 467
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=3.8e+02 Score=26.27 Aligned_cols=64 Identities=9% Similarity=-0.039 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH---HHH----HHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF---VWG----ALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
...|.|++.|...+.++.|..+..+.. -|+.. -|. -+...-.-.+++..|.+.+-+++...|.+
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 344566666666677777777766665 12111 111 11123344566777777777777666653
No 468
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.71 E-value=2.1e+02 Score=29.91 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHHHHcccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCC
Q 036165 184 SVLKACGHLSDIGTGEKIHSLVLKHSF--GTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 184 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~ 229 (566)
+++.+|...|++-.+.++++.++..+- +.-...+|..++-..+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 556666666666666666665554321 1112344555555555554
No 469
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=38.09 E-value=3.2e+02 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHH
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHI 172 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~ 172 (566)
.+.+++.+.+.|....|..+.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 44566666666666666666666543
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.08 E-value=1.2e+02 Score=27.45 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=24.9
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCC----CCChhHHHHHHHHHHhcCCHHHHHHH
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKI----MPRTEHYACMVDLLGRAGRLAEAYEM 508 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~ 508 (566)
+...|...|++++|.++|+.+...+.- .+...+...+..++.+.|+.++...+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344455555555555555555432211 11223334444555555555555444
No 471
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.59 E-value=69 Score=31.70 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=62.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CChhH-HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSE--RNTVT-WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVEL 468 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (566)
++.+.+.++++.|..++.++.+ ||-.. |..-..++.+.+++..|+.=+.++++..+.....|.-=..+|...+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3445566777888888877765 43333 33333667777777777777776666554444455555566677777777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 469 GQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 469 a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
|...|+... .+.|+..-....++-
T Consensus 91 A~~~l~~~~---~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 91 ALLDLEKVK---KLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHhh---hcCcCcHHHHHHHHH
Confidence 777777666 346665544444433
No 472
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.36 E-value=3.1e+02 Score=24.59 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.3
Q ss_pred hcCCHHHHHHHHHHHhhhCCCC
Q 036165 530 NHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
..++.+.|..+++++++++|+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4457889999999999999854
No 473
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.34 E-value=4e+02 Score=25.91 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=27.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCchHHHHHHHHH
Q 036165 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA-SAANMRRGKEIHGC 375 (566)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~ 375 (566)
..+.+.|.+..|+++.+-+.+-...-|+.....+|..|+ +.++++-..++.+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 345556666666666666665543334444444444443 34444444444443
No 474
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.22 E-value=85 Score=21.44 Aligned_cols=49 Identities=4% Similarity=-0.010 Sum_probs=31.6
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHh
Q 036165 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291 (566)
Q Consensus 242 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 291 (566)
.+....++.++...++..-.++++..+.+....|. .+..+|..-++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34555677777777777777888888888777774 45555655555444
No 475
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.01 E-value=1.2e+02 Score=25.50 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33444444444444433333333333444444443
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.99 E-value=98 Score=26.84 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 036165 79 AAYSERIEIYIRDRALQSGKILHAQLIVSG 108 (566)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 108 (566)
...+.+++.|.-.|+++.|.+.|..+++..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 457889999999999999999999999875
No 477
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.94 E-value=1.3e+02 Score=24.55 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=21.2
Q ss_pred HHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334444444445555555555555544444433334444554443
No 478
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=36.65 E-value=3.4e+02 Score=24.88 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHH---HhcCCC-C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 491 CMVDLLGRAGRLAEAYEMI---KTMSTE-P-----DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~---~~~~~~-p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
.|..-+.+.|+++.|-.++ +..... . +...-..++......|+++-+.++.+-+..++|++..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~~ 255 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEGNT 255 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccCc
Confidence 4566677788888875554 333311 1 2333445666777889999999999999998887643
No 479
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.62 E-value=1.7e+02 Score=21.50 Aligned_cols=36 Identities=14% Similarity=-0.064 Sum_probs=23.8
Q ss_pred hcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
...+.|...-..+...+...|++++|.+.+-.+...
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 335566677777777777788888887777776654
No 480
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.89 E-value=3.1e+02 Score=24.24 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=38.6
Q ss_pred HHHHHHHHhccCCh-------HHHHHHHHHhHHhcCCCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC
Q 036165 453 FTAVLTACCHVGLV-------ELGQRLFNMMQEKYKIMP---R-TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517 (566)
Q Consensus 453 ~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 517 (566)
+.-+...|-..|+- ..|.+.|.+..+....+. + ..+.-.++....+.|+.++|.+.|.++...++
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34444455555553 345555555554412211 1 23334566778899999999999999884443
No 481
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.50 E-value=2.1e+02 Score=23.42 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=9.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHcC
Q 036165 289 GFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
.+...++.-.|.++++.+.+.+
T Consensus 29 ~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 29 LLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHhcCCCCCHHHHHHHHHHhC
Confidence 3333333344444444444443
No 482
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.23 E-value=5e+02 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=13.6
Q ss_pred hcCChHHHHHHHHHhHHCCCCCCc
Q 036165 156 RRGYHQEAVTVFHEMHIQGLKQNI 179 (566)
Q Consensus 156 ~~g~~~~A~~~~~~m~~~g~~p~~ 179 (566)
+.++++.|+.++.+|...|..|..
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~ 278 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEV 278 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 345666666666666665554443
No 483
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.04 E-value=1.8e+02 Score=21.37 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 036165 97 GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159 (566)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 159 (566)
...++..+++.|+- +.... -...+...+.+.+.++++.+++++..+|..+..++...|.
T Consensus 22 ~~~v~~~L~~~gvl-t~~~~---~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDIL-TDSMA---ESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCC-CHHHH---HHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 44567777777642 22222 2233344567888899999888888899999888866554
No 484
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.42 E-value=94 Score=20.97 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=19.0
Q ss_pred HHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 036165 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA 188 (566)
Q Consensus 154 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 188 (566)
+...|++-+|-++++.+-.....+....+..+|..
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 34567777777777777654333333444444443
No 485
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=34.21 E-value=4.8e+02 Score=28.87 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=8.1
Q ss_pred HHHHHhcCCCHHHHHHH
Q 036165 286 LISGFSKSGDQVMVSKL 302 (566)
Q Consensus 286 ll~~~~~~~~~~~a~~~ 302 (566)
.+...+..|+.+-+..+
T Consensus 625 ~L~~Aa~~g~~~~v~~L 641 (823)
T PLN03192 625 LLCTAAKRNDLTAMKEL 641 (823)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 34444555555544433
No 486
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=34.14 E-value=81 Score=32.93 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=18.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
+...-..++..|.+.|-.+.+.++.+.+-.+- ....-|..-+.-+.+.|+...+..+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333444444455554444444444432221 11223344444444555544444444433
No 487
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.11 E-value=57 Score=30.74 Aligned_cols=88 Identities=13% Similarity=-0.071 Sum_probs=44.6
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 397 KCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
..|.+++|+..|....+ +....|.--.+++.+.+++..|++=+....+..+.....|-.-..+..-.|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 34556666666655554 223334444455556666666665555555432222223333333444456666666666
Q ss_pred HHhHHhcCCCCC
Q 036165 474 NMMQEKYKIMPR 485 (566)
Q Consensus 474 ~~~~~~~~~~p~ 485 (566)
....+. ++.+.
T Consensus 206 ~~a~kl-d~dE~ 216 (377)
T KOG1308|consen 206 ALACKL-DYDEA 216 (377)
T ss_pred HHHHhc-cccHH
Confidence 666554 44333
No 488
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.09 E-value=2.6e+02 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 036165 366 MRRGKEIHGCAIVMGVEGD 384 (566)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~ 384 (566)
.-.|.++++.+.+.++..+
T Consensus 33 h~sa~eI~~~l~~~~~~i~ 51 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIG 51 (148)
T ss_pred CCCHHHHHHHHHhhCCCCC
Confidence 3344444444444443333
No 489
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=33.29 E-value=2e+02 Score=22.92 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+...-+.+.|.++|+++++..|+...++..+..-
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~ 119 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQN 119 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHc
Confidence 3445577999999999999999999988877654
No 490
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.93 E-value=2.5e+02 Score=22.26 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036165 434 EAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 434 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
.+.++|+.|... +..-...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777777665 444555666667777777777777777654
No 491
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.59 E-value=3.3e+02 Score=23.55 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=36.7
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCC--------------CCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGV--------------EGDLHVRSALVDMYAKCGFISEARTLFDK 410 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 410 (566)
+++-.|.+..++.+++++++.+.+..+ .+.-.+.|.....+.+.|.++.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 445556666677777777776655322 12334566777778888888888888774
No 492
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.53 E-value=3.8e+02 Score=26.14 Aligned_cols=53 Identities=11% Similarity=-0.161 Sum_probs=35.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhhc-CCCCHHH----HHHHHHHHh--ccCChHHHHHHHHH
Q 036165 423 IFGCANHGYCDEAIELFNQMEER-KKLDHLS----FTAVLTACC--HVGLVELGQRLFNM 475 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~l~~~~~--~~g~~~~a~~~~~~ 475 (566)
+..+.+.+++..|.++|+++... .++.... |..+..+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556788999999999999987 4444433 333333443 35677888888875
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.24 E-value=2.2e+02 Score=21.42 Aligned_cols=35 Identities=29% Similarity=0.084 Sum_probs=22.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHH
Q 036165 524 LLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558 (566)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 558 (566)
|.-.|.+.|+.+.|.+-|+.=..+.|++..+...|
T Consensus 78 LGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 33446677777777777776666677666655544
No 494
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.66 E-value=5.3e+02 Score=25.63 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=24.1
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036165 319 TSVISGLVH---NFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360 (566)
Q Consensus 319 ~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 360 (566)
..+++++.+ .++++.|+..+..|++.|..|....-..+..++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444443 367777777777777777666544444444443
No 495
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.57 E-value=2e+02 Score=24.25 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 329 (566)
.-.|.++++.+.+.+...+..|-..-+..+...|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344444444444443333333333333344433
No 496
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.51 E-value=1.2e+02 Score=29.88 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 216 VVSSLIDMYSKCGSVEKAKKVFDEMVE-----------KDIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
+...|++.++-.||+..|+++++.+.- ..+.++-.+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888887721 134566677778888888888888887754
No 497
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.23 E-value=2.8e+02 Score=22.40 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 447 KLDHLSFTAVLTACCHVGL---VELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+...+-..+..++.++.+ ..+.+.+++.+.+. ..+. ..+..-.|.-++.|.|+++.++++++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555556666665543 44556666666642 2221 22333445566777777887777777665
No 498
>PHA02875 ankyrin repeat protein; Provisional
Probab=30.91 E-value=5.3e+02 Score=25.43 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=8.6
Q ss_pred HHHHhhcCChHHHHHHhc
Q 036165 120 ITFYTECQNIHHARMLFD 137 (566)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~ 137 (566)
+...+..|+.+-+.-+++
T Consensus 39 L~~A~~~~~~~~v~~Ll~ 56 (413)
T PHA02875 39 IKLAMKFRDSEAIKLLMK 56 (413)
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344445555554444444
No 499
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.87 E-value=4.6e+02 Score=24.66 Aligned_cols=92 Identities=7% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc----------CCHHHH
Q 036165 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC----------GFISEA 404 (566)
Q Consensus 335 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A 404 (566)
.++++.|.+.++.|.-..+.-+.-.+.+.=.+..+..+|+.+.. |..-|..|+..|+.. |++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCC
Q 036165 405 RTLFDKMSERNTVTWNSMIFGCANHGY 431 (566)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (566)
+++++.....|+...-.+...+.....
T Consensus 338 mkLLQ~yp~tdi~~~l~~A~~Lr~~k~ 364 (370)
T KOG4567|consen 338 MKLLQNYPTTDISKMLAVADSLRDKKH 364 (370)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhccc
No 500
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.97 E-value=5.9e+02 Score=29.24 Aligned_cols=154 Identities=10% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHcccCChhHHHH------HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc-----------CCCChhhHH
Q 036165 187 KACGHLSDIGTGEK------IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM-----------VEKDIVAMN 249 (566)
Q Consensus 187 ~~~~~~~~~~~a~~------~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------~~~~~~~~~ 249 (566)
..+...|.+.++.+ ++......-.++....|..|...+-+.|+.++|...-... ...+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhh-------CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-------Ch
Q 036165 250 AMVSGYVQRGLATEALNLVEEIGT-------PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-------DV 315 (566)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~ 315 (566)
.+.-.....++...|...+.+... ...+|...+++.+-..+...++.+.|.+..+.+.+..... +.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 036165 316 VSWTSVISGLVHNFCNDEAFDTFKE 340 (566)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~ 340 (566)
.++..+.+.+...+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
Done!