Query 036165
Match_columns 566
No_of_seqs 660 out of 3058
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:10:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-41 5.3E-46 354.1 42.6 480 77-564 83-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.7E-40 2.3E-44 341.7 40.9 433 124-566 64-564 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5E-29 1.7E-33 244.9 44.5 373 151-566 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.5E-27 1.9E-31 230.3 44.0 353 119-477 5-366 (388)
5 4g26_A Pentatricopeptide repea 100.0 3E-29 1E-33 250.5 20.7 215 161-397 7-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.8E-28 9.5E-33 243.5 21.8 186 146-362 28-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.3E-25 7.9E-30 227.4 36.3 280 280-562 186-493 (514)
8 3fp2_A TPR repeat-containing p 99.9 2E-23 7E-28 214.2 37.4 433 114-559 26-503 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 2E-23 6.9E-28 209.2 36.5 307 248-562 29-373 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.7E-23 9.2E-28 212.0 35.3 431 79-518 7-482 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 2.8E-22 9.5E-27 200.9 37.5 346 178-552 25-415 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.3E-21 4.3E-26 200.8 37.3 424 78-513 25-489 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 8.3E-21 2.9E-25 183.8 36.9 312 246-564 4-352 (359)
14 3hym_B Cell division cycle pro 99.9 3.9E-20 1.3E-24 176.9 30.8 282 279-563 21-315 (330)
15 2xm6_A Protein corresponding t 99.9 2.5E-17 8.6E-22 166.5 45.4 348 142-513 37-430 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 3.4E-18 1.2E-22 165.4 36.3 327 179-530 3-352 (359)
17 1b89_A Protein (clathrin heavy 99.8 7.6E-20 2.6E-24 174.0 20.7 376 125-542 15-412 (449)
18 2ooe_A Cleavage stimulation fa 99.8 1.5E-17 5.2E-22 169.9 36.6 421 101-550 2-495 (530)
19 2xm6_A Protein corresponding t 99.8 1.1E-16 3.8E-21 161.8 42.0 348 112-479 38-432 (490)
20 3hym_B Cell division cycle pro 99.8 1.3E-17 4.4E-22 159.3 32.4 282 248-535 25-322 (330)
21 1xi4_A Clathrin heavy chain; a 99.8 1.2E-15 4E-20 161.7 49.2 420 75-542 982-1440(1630)
22 2ooe_A Cleavage stimulation fa 99.8 1.3E-16 4.3E-21 163.0 41.4 419 74-513 9-490 (530)
23 1fch_A Peroxisomal targeting s 99.8 2E-18 6.8E-23 167.8 24.8 248 315-566 64-344 (368)
24 1xi4_A Clathrin heavy chain; a 99.8 7E-16 2.4E-20 163.4 44.9 403 112-565 984-1414(1630)
25 1fch_A Peroxisomal targeting s 99.8 1.4E-18 4.7E-23 169.0 22.9 298 224-546 35-358 (368)
26 3mkr_A Coatomer subunit epsilo 99.8 3.2E-17 1.1E-21 152.9 27.7 231 319-557 38-274 (291)
27 4eqf_A PEX5-related protein; a 99.8 8.8E-18 3E-22 163.1 23.3 247 316-566 66-341 (365)
28 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.6E-22 161.8 23.6 264 244-543 64-352 (365)
29 4g1t_A Interferon-induced prot 99.8 1.2E-16 4.2E-21 160.8 30.4 387 143-560 50-472 (472)
30 1b89_A Protein (clathrin heavy 99.8 1.4E-18 4.7E-23 165.3 15.0 304 226-563 15-339 (449)
31 3cv0_A Peroxisome targeting si 99.8 6.7E-17 2.3E-21 154.1 24.9 243 320-566 26-300 (327)
32 3cv0_A Peroxisome targeting si 99.8 1.9E-16 6.4E-21 150.9 26.5 265 247-548 23-316 (327)
33 4g1t_A Interferon-induced prot 99.7 4E-15 1.4E-19 149.8 34.5 259 295-566 153-444 (472)
34 3mkr_A Coatomer subunit epsilo 99.7 2.4E-15 8.1E-20 140.2 30.1 247 224-513 9-262 (291)
35 3uq3_A Heat shock protein STI1 99.7 2.8E-16 9.6E-21 144.1 23.0 236 281-562 6-257 (258)
36 3u4t_A TPR repeat-containing p 99.7 1.8E-15 6.2E-20 140.1 23.1 248 282-564 5-267 (272)
37 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-17 7.4E-22 169.6 9.3 112 247-358 129-244 (1134)
38 2pl2_A Hypothetical conserved 99.7 4.9E-15 1.7E-19 131.8 21.1 180 384-566 4-199 (217)
39 2h6f_A Protein farnesyltransfe 99.7 1E-14 3.5E-19 140.5 24.1 245 316-564 98-365 (382)
40 2q7f_A YRRB protein; TPR, prot 99.7 3E-15 1E-19 136.0 18.4 204 359-565 32-240 (243)
41 3e4b_A ALGK; tetratricopeptide 99.7 5.8E-14 2E-18 139.6 29.0 249 83-345 8-281 (452)
42 2ho1_A Type 4 fimbrial biogene 99.6 5E-14 1.7E-18 128.7 25.0 173 384-558 70-249 (252)
43 3spa_A Mtrpol, DNA-directed RN 99.6 3E-16 1E-20 161.2 10.1 129 277-405 124-256 (1134)
44 3uq3_A Heat shock protein STI1 99.6 3.2E-14 1.1E-18 130.3 23.0 224 245-513 5-234 (258)
45 2vq2_A PILW, putative fimbrial 99.6 5.7E-14 1.9E-18 125.7 23.9 205 352-559 10-223 (225)
46 2pl2_A Hypothetical conserved 99.6 1.2E-14 4.1E-19 129.3 19.2 208 313-545 3-212 (217)
47 3u4t_A TPR repeat-containing p 99.6 2.4E-13 8.1E-18 125.7 28.5 246 245-527 3-264 (272)
48 4e6h_A MRNA 3'-END-processing 99.6 7.9E-12 2.7E-16 128.5 42.2 437 94-557 48-580 (679)
49 1ouv_A Conserved hypothetical 99.6 1.7E-13 5.8E-18 126.8 26.9 229 315-555 6-259 (273)
50 3e4b_A ALGK; tetratricopeptide 99.6 8.9E-14 3E-18 138.3 25.6 377 149-548 8-422 (452)
51 3sf4_A G-protein-signaling mod 99.6 1.2E-14 3.9E-19 143.1 18.8 290 245-565 9-360 (406)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.7E-13 6E-18 126.8 24.4 222 329-555 19-252 (275)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.2E-14 1.8E-18 130.3 19.6 240 294-541 19-269 (275)
54 3vtx_A MAMA; tetratricopeptide 99.6 1.9E-13 6.4E-18 118.2 19.2 168 384-553 4-176 (184)
55 4a1s_A PINS, partner of inscut 99.6 7.4E-14 2.5E-18 137.7 18.7 271 247-549 50-374 (411)
56 2h6f_A Protein farnesyltransfe 99.6 1.9E-13 6.7E-18 131.6 20.6 211 351-565 98-322 (382)
57 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-12 4.1E-17 119.4 25.1 195 315-513 37-236 (252)
58 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-13 9E-18 123.0 19.4 193 317-513 25-220 (243)
59 2vq2_A PILW, putative fimbrial 99.6 5.8E-13 2E-17 119.0 21.2 182 384-566 7-196 (225)
60 1ouv_A Conserved hypothetical 99.5 8.9E-12 3E-16 115.2 29.5 221 245-479 6-251 (273)
61 2ond_A Cleavage stimulation fa 99.5 2.3E-12 7.7E-17 121.4 25.6 184 367-552 81-275 (308)
62 3ro2_A PINS homolog, G-protein 99.5 1.5E-13 5.1E-18 131.1 17.7 272 248-550 8-335 (338)
63 3sf4_A G-protein-signaling mod 99.5 3.1E-13 1.1E-17 132.8 19.5 293 211-534 6-363 (406)
64 4a1s_A PINS, partner of inscut 99.5 5.1E-13 1.7E-17 131.7 18.8 269 214-513 48-370 (411)
65 3ulq_A Response regulator aspa 99.5 1.9E-12 6.5E-17 126.2 21.7 228 321-548 109-369 (383)
66 2ond_A Cleavage stimulation fa 99.5 6E-12 2.1E-16 118.5 23.9 251 297-560 33-305 (308)
67 3ro2_A PINS homolog, G-protein 99.5 6.7E-13 2.3E-17 126.5 17.5 268 215-513 6-330 (338)
68 4e6h_A MRNA 3'-END-processing 99.5 4.9E-10 1.7E-14 115.2 39.0 134 74-208 62-223 (679)
69 4i17_A Hypothetical protein; T 99.5 3.1E-12 1.1E-16 114.7 19.6 208 348-565 5-227 (228)
70 3vtx_A MAMA; tetratricopeptide 99.5 5.5E-12 1.9E-16 108.8 20.1 150 415-566 4-155 (184)
71 3as5_A MAMA; tetratricopeptide 99.5 5.7E-12 2E-16 108.6 19.9 169 385-555 8-181 (186)
72 4abn_A Tetratricopeptide repea 99.5 1.6E-12 5.4E-17 130.1 18.2 209 330-543 83-317 (474)
73 4abn_A Tetratricopeptide repea 99.5 4.1E-12 1.4E-16 127.1 20.4 211 296-512 84-318 (474)
74 3nf1_A KLC 1, kinesin light ch 99.4 3.3E-13 1.1E-17 127.3 11.2 243 279-550 26-310 (311)
75 3ulq_A Response regulator aspa 99.4 3.2E-11 1.1E-15 117.5 24.2 158 220-377 109-291 (383)
76 3q15_A PSP28, response regulat 99.4 9.2E-11 3.2E-15 114.0 24.4 162 386-547 183-365 (378)
77 3nf1_A KLC 1, kinesin light ch 99.4 4.2E-12 1.4E-16 119.6 13.4 59 214-272 27-96 (311)
78 4gyw_A UDP-N-acetylglucosamine 99.4 2.5E-11 8.5E-16 126.3 19.6 166 384-551 8-178 (723)
79 1qqe_A Vesicular transport pro 99.3 7.1E-11 2.4E-15 110.1 19.9 176 386-562 78-284 (292)
80 1hz4_A MALT regulatory protein 99.3 5.2E-10 1.8E-14 108.4 26.4 192 354-550 139-352 (373)
81 4ga2_A E3 SUMO-protein ligase 99.3 3.3E-12 1.1E-16 105.9 8.7 143 422-566 3-148 (150)
82 4gyw_A UDP-N-acetylglucosamine 99.3 3.3E-11 1.1E-15 125.4 17.2 162 349-513 8-172 (723)
83 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4.1E-15 100.2 18.0 148 417-566 9-158 (186)
84 4i17_A Hypothetical protein; T 99.3 8.3E-11 2.8E-15 105.3 17.4 148 416-565 7-166 (228)
85 1hz4_A MALT regulatory protein 99.3 6.5E-10 2.2E-14 107.7 25.0 260 289-549 23-324 (373)
86 3q15_A PSP28, response regulat 99.3 1.2E-09 4E-14 106.2 25.1 158 220-378 107-289 (378)
87 3qky_A Outer membrane assembly 99.2 4.3E-10 1.5E-14 103.0 18.7 179 384-564 14-244 (261)
88 2fo7_A Synthetic consensus TPR 99.2 7.3E-10 2.5E-14 89.5 17.5 132 418-551 3-136 (136)
89 3edt_B KLC 2, kinesin light ch 99.2 4.2E-10 1.4E-14 104.1 17.0 164 385-548 85-282 (283)
90 3mv2_B Coatomer subunit epsilo 99.2 3.4E-09 1.2E-13 96.7 21.5 182 369-557 85-292 (310)
91 3urz_A Uncharacterized protein 99.2 1.2E-09 4.1E-14 96.1 16.7 138 420-561 58-199 (208)
92 2pzi_A Probable serine/threoni 99.1 2.6E-10 8.8E-15 119.3 14.0 199 361-563 402-618 (681)
93 4gco_A Protein STI-1; structur 99.1 1.9E-09 6.5E-14 86.0 14.8 110 451-562 14-125 (126)
94 2vsy_A XCC0866; transferase, g 99.1 2E-09 6.8E-14 110.7 18.4 160 398-559 2-169 (568)
95 2pzi_A Probable serine/threoni 99.1 2.8E-09 9.7E-14 111.5 19.7 182 326-513 402-603 (681)
96 3edt_B KLC 2, kinesin light ch 99.1 7.6E-10 2.6E-14 102.3 13.6 130 282-411 45-195 (283)
97 2uy1_A Cleavage stimulation fa 99.1 1.4E-07 5E-12 94.0 30.4 374 125-546 6-412 (493)
98 1qqe_A Vesicular transport pro 99.1 1.3E-08 4.4E-13 94.7 20.9 201 295-513 32-267 (292)
99 3dra_A Protein farnesyltransfe 99.1 1.2E-07 4.1E-12 87.5 26.7 229 331-563 49-304 (306)
100 3mv2_B Coatomer subunit epsilo 99.1 1.9E-08 6.4E-13 91.8 20.1 160 404-566 85-269 (310)
101 3qou_A Protein YBBN; thioredox 99.1 4.5E-09 1.5E-13 97.5 16.5 161 383-545 115-282 (287)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.1E-08 3.7E-13 91.1 17.7 186 350-554 4-220 (225)
103 3qky_A Outer membrane assembly 99.0 8.4E-09 2.9E-13 94.3 17.3 152 414-565 13-198 (261)
104 3urz_A Uncharacterized protein 99.0 1.6E-08 5.6E-13 88.7 17.3 187 317-526 6-198 (208)
105 1na0_A Designed protein CTPR3; 99.0 1.4E-08 4.7E-13 80.6 15.2 115 450-566 9-125 (125)
106 2uy1_A Cleavage stimulation fa 99.0 4.6E-07 1.6E-11 90.4 29.1 122 386-513 287-411 (493)
107 2r5s_A Uncharacterized protein 99.0 1.5E-08 5.2E-13 86.3 15.5 156 388-546 9-172 (176)
108 3qou_A Protein YBBN; thioredox 99.0 3.4E-08 1.2E-12 91.5 19.0 165 347-512 114-281 (287)
109 2fo7_A Synthetic consensus TPR 99.0 1.8E-08 6.2E-13 81.1 14.8 124 388-513 4-130 (136)
110 2lni_A Stress-induced-phosphop 99.0 1.3E-08 4.5E-13 81.8 13.5 117 448-566 14-132 (133)
111 2ifu_A Gamma-SNAP; membrane fu 99.0 8E-09 2.7E-13 96.9 13.9 95 418-513 118-222 (307)
112 2vgx_A Chaperone SYCD; alterna 98.9 5.1E-09 1.7E-13 86.2 10.9 122 438-561 9-132 (148)
113 4ga2_A E3 SUMO-protein ligase 98.9 5.6E-09 1.9E-13 86.3 11.0 141 391-533 3-149 (150)
114 3rjv_A Putative SEL1 repeat pr 98.9 8.4E-08 2.9E-12 84.4 19.3 184 369-561 5-209 (212)
115 2r5s_A Uncharacterized protein 98.9 7E-09 2.4E-13 88.4 12.0 146 418-566 8-158 (176)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 7.7E-08 2.6E-12 90.2 19.6 200 327-553 3-229 (307)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 6.4E-08 2.2E-12 85.2 17.9 124 388-513 9-148 (213)
118 2e2e_A Formate-dependent nitri 98.9 1.9E-08 6.5E-13 85.8 13.3 133 427-561 21-158 (177)
119 2yhc_A BAMD, UPF0169 lipoprote 98.9 7.7E-08 2.6E-12 85.6 17.6 187 314-513 3-211 (225)
120 2vyi_A SGTA protein; chaperone 98.9 5.2E-08 1.8E-12 77.9 14.6 116 449-566 11-128 (131)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-07 4.4E-12 83.2 18.4 134 418-556 8-159 (213)
122 2vsy_A XCC0866; transferase, g 98.9 2.6E-08 8.9E-13 102.3 15.3 135 429-565 2-138 (568)
123 3gyz_A Chaperone protein IPGC; 98.9 1.1E-08 3.7E-13 84.2 9.6 102 449-552 35-138 (151)
124 2xcb_A PCRH, regulatory protei 98.9 2E-08 6.8E-13 82.1 11.2 122 439-562 7-130 (142)
125 3rjv_A Putative SEL1 repeat pr 98.8 5.1E-07 1.7E-11 79.3 20.5 170 299-479 5-197 (212)
126 3upv_A Heat shock protein STI1 98.8 7.2E-08 2.5E-12 76.8 13.1 113 450-564 4-124 (126)
127 2dba_A Smooth muscle cell asso 98.8 1.4E-07 4.8E-12 77.3 15.2 117 447-566 25-147 (148)
128 4f3v_A ESX-1 secretion system 98.8 1.1E-07 3.8E-12 85.6 15.3 194 362-560 18-249 (282)
129 1elw_A TPR1-domain of HOP; HOP 98.8 1.6E-07 5.4E-12 73.4 14.6 112 450-563 4-117 (118)
130 2qfc_A PLCR protein; TPR, HTH, 98.8 1.7E-07 5.9E-12 87.1 16.8 160 387-546 77-265 (293)
131 3u3w_A Transcriptional activat 98.8 9.5E-07 3.3E-11 82.1 21.8 157 390-546 80-265 (293)
132 3q7a_A Farnesyltransferase alp 98.8 8E-06 2.7E-10 76.1 27.2 231 328-562 67-347 (349)
133 1p5q_A FKBP52, FK506-binding p 98.7 8.1E-09 2.8E-13 98.0 6.3 146 399-546 127-293 (336)
134 3u3w_A Transcriptional activat 98.7 9.6E-07 3.3E-11 82.0 20.2 146 421-566 80-250 (293)
135 3sz7_A HSC70 cochaperone (SGT) 98.7 1.5E-07 5E-12 79.0 13.2 108 450-559 11-120 (164)
136 2fbn_A 70 kDa peptidylprolyl i 98.7 2E-08 6.8E-13 87.4 8.0 143 394-538 13-176 (198)
137 3dra_A Protein farnesyltransfe 98.7 2.6E-06 8.9E-11 78.5 22.4 200 364-566 47-272 (306)
138 1a17_A Serine/threonine protei 98.7 5.1E-07 1.7E-11 75.6 16.1 128 417-546 14-145 (166)
139 3gw4_A Uncharacterized protein 98.7 2.6E-07 9.1E-12 80.4 14.2 151 397-547 4-176 (203)
140 2c2l_A CHIP, carboxy terminus 98.7 7.1E-08 2.4E-12 89.0 10.3 192 349-548 3-200 (281)
141 3dss_A Geranylgeranyl transfer 98.7 9.3E-06 3.2E-10 75.3 24.3 230 327-562 41-319 (331)
142 4gco_A Protein STI-1; structur 98.7 6.4E-07 2.2E-11 71.1 14.4 94 418-513 15-108 (126)
143 2c2l_A CHIP, carboxy terminus 98.7 1.9E-07 6.6E-12 86.1 12.7 189 314-513 3-197 (281)
144 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.7E-12 77.0 10.8 103 415-519 35-138 (151)
145 2qfc_A PLCR protein; TPR, HTH, 98.7 6.9E-07 2.4E-11 83.0 16.2 149 418-566 77-250 (293)
146 3q49_B STIP1 homology and U bo 98.6 6.1E-07 2.1E-11 72.4 13.5 114 447-562 6-126 (137)
147 1na0_A Designed protein CTPR3; 98.6 1.6E-06 5.3E-11 68.3 15.4 112 417-530 10-123 (125)
148 1a17_A Serine/threonine protei 98.6 8.1E-07 2.8E-11 74.3 13.6 125 386-512 14-143 (166)
149 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.8E-11 69.9 13.7 115 417-533 13-129 (131)
150 4f3v_A ESX-1 secretion system 98.6 1.5E-06 5.2E-11 78.2 15.4 138 386-524 103-247 (282)
151 3gw4_A Uncharacterized protein 98.6 2E-06 6.9E-11 74.7 16.2 130 384-513 25-174 (203)
152 2lni_A Stress-induced-phosphop 98.6 1.2E-06 4.3E-11 70.0 13.7 115 416-532 16-132 (133)
153 1hxi_A PEX5, peroxisome target 98.6 5.5E-07 1.9E-11 70.9 10.9 99 453-553 20-120 (121)
154 4gcn_A Protein STI-1; structur 98.6 6.6E-07 2.3E-11 71.2 11.4 105 452-559 10-123 (127)
155 2kck_A TPR repeat; tetratricop 98.6 5.8E-07 2E-11 69.4 10.8 102 449-552 5-111 (112)
156 1p5q_A FKBP52, FK506-binding p 98.5 1.7E-06 6E-11 81.9 15.9 128 384-513 146-292 (336)
157 2xev_A YBGF; tetratricopeptide 98.5 2.6E-06 8.9E-11 67.8 14.5 106 454-561 6-119 (129)
158 1elr_A TPR2A-domain of HOP; HO 98.5 1E-06 3.4E-11 70.2 12.0 111 451-564 5-124 (131)
159 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 8.7E-08 3E-12 95.1 6.6 145 399-545 248-413 (457)
160 4gcn_A Protein STI-1; structur 98.5 1.7E-06 5.7E-11 68.8 12.8 108 417-524 9-122 (127)
161 2fbn_A 70 kDa peptidylprolyl i 98.5 2.4E-07 8.3E-12 80.5 8.4 114 451-564 39-168 (198)
162 3rkv_A Putative peptidylprolyl 98.5 6.7E-07 2.3E-11 74.7 10.7 111 453-563 14-143 (162)
163 2vgx_A Chaperone SYCD; alterna 98.5 6.8E-07 2.3E-11 73.3 10.0 91 388-478 24-117 (148)
164 1dce_A Protein (RAB geranylger 98.5 1.2E-05 4.1E-10 81.6 20.4 166 399-566 43-240 (567)
165 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.6E-11 74.1 11.5 114 364-478 24-143 (177)
166 3k9i_A BH0479 protein; putativ 98.5 3.1E-07 1.1E-11 71.9 6.9 99 462-561 2-104 (117)
167 1elw_A TPR1-domain of HOP; HOP 98.4 7.4E-06 2.5E-10 63.6 14.5 108 416-525 4-113 (118)
168 1na3_A Designed protein CTPR2; 98.4 1.7E-06 5.9E-11 63.8 9.9 82 485-566 8-91 (91)
169 3upv_A Heat shock protein STI1 98.4 6.7E-06 2.3E-10 65.1 14.0 95 417-513 5-99 (126)
170 4b4t_Q 26S proteasome regulato 98.4 0.00011 3.7E-09 72.3 25.7 161 318-478 58-244 (434)
171 2hr2_A Hypothetical protein; a 98.4 1.2E-06 4.2E-11 71.0 8.9 105 453-560 14-144 (159)
172 3q7a_A Farnesyltransferase alp 98.4 2.2E-05 7.7E-10 73.1 18.1 169 396-566 65-256 (349)
173 1elr_A TPR2A-domain of HOP; HO 98.3 3.2E-06 1.1E-10 67.2 10.6 112 417-528 5-122 (131)
174 3sz7_A HSC70 cochaperone (SGT) 98.3 7.1E-06 2.4E-10 68.5 13.2 92 387-478 13-107 (164)
175 2xcb_A PCRH, regulatory protei 98.3 1.2E-05 4E-10 65.3 13.9 95 417-513 19-113 (142)
176 3dss_A Geranylgeranyl transfer 98.3 9.8E-05 3.3E-09 68.5 21.4 191 366-559 46-279 (331)
177 1ihg_A Cyclophilin 40; ppiase 98.3 3.4E-06 1.2E-10 80.9 11.9 129 417-565 224-354 (370)
178 2if4_A ATFKBP42; FKBP-like, al 98.3 2.3E-06 7.8E-11 81.1 10.2 150 386-553 180-334 (338)
179 3q49_B STIP1 homology and U bo 98.3 2.1E-05 7.3E-10 63.1 14.4 97 415-513 8-104 (137)
180 3ro3_A PINS homolog, G-protein 98.3 4.8E-06 1.6E-10 69.0 10.6 131 418-548 11-159 (164)
181 1hxi_A PEX5, peroxisome target 98.3 3.8E-06 1.3E-10 66.0 9.3 79 488-566 19-99 (121)
182 2kck_A TPR repeat; tetratricop 98.3 9.4E-06 3.2E-10 62.3 11.6 96 416-513 6-104 (112)
183 1wao_1 Serine/threonine protei 98.3 1.5E-06 5E-11 86.6 8.2 115 426-542 16-134 (477)
184 4b4t_Q 26S proteasome regulato 98.2 2.9E-05 9.9E-10 76.4 17.1 191 323-513 12-243 (434)
185 2l6j_A TPR repeat-containing p 98.2 5E-06 1.7E-10 64.0 9.2 81 485-565 3-91 (111)
186 2dba_A Smooth muscle cell asso 98.2 2.8E-05 9.4E-10 63.3 13.9 97 415-513 27-126 (148)
187 2if4_A ATFKBP42; FKBP-like, al 98.2 4.8E-06 1.6E-10 78.9 10.2 128 417-563 180-309 (338)
188 1wao_1 Serine/threonine protei 98.2 9.4E-06 3.2E-10 80.8 12.1 105 455-561 11-117 (477)
189 2xev_A YBGF; tetratricopeptide 98.2 7.2E-05 2.5E-09 59.2 14.7 91 421-513 7-103 (129)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.4E-05 8.1E-10 77.5 13.7 128 384-513 267-413 (457)
191 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.4E-10 64.9 10.7 127 387-513 11-156 (164)
192 1zu2_A Mitochondrial import re 98.0 1.3E-05 4.3E-10 64.9 7.9 57 503-559 63-132 (158)
193 1klx_A Cysteine rich protein B 98.0 0.0001 3.4E-09 59.3 13.2 120 430-559 9-136 (138)
194 1ihg_A Cyclophilin 40; ppiase 98.0 3.6E-05 1.2E-09 73.7 12.3 138 385-539 223-362 (370)
195 3rkv_A Putative peptidylprolyl 98.0 5E-05 1.7E-09 63.1 11.4 66 450-517 63-129 (162)
196 2kat_A Uncharacterized protein 98.0 3.6E-05 1.2E-09 59.7 9.1 76 435-512 4-79 (115)
197 3ly7_A Transcriptional activat 97.9 0.00049 1.7E-08 64.0 17.1 141 414-554 192-346 (372)
198 3k9i_A BH0479 protein; putativ 97.9 4.2E-05 1.4E-09 59.5 8.2 60 419-478 30-89 (117)
199 3n71_A Histone lysine methyltr 97.9 6.2E-05 2.1E-09 74.4 11.2 121 426-546 319-463 (490)
200 2l6j_A TPR repeat-containing p 97.9 1.6E-05 5.5E-10 61.0 5.6 91 417-510 5-102 (111)
201 2hr2_A Hypothetical protein; a 97.8 0.00011 3.7E-09 59.6 9.1 60 418-477 59-129 (159)
202 1dce_A Protein (RAB geranylger 97.7 0.0013 4.3E-08 66.7 18.0 134 429-564 42-190 (567)
203 3ma5_A Tetratricopeptide repea 97.7 0.00012 4.1E-09 55.0 7.9 62 449-512 6-67 (100)
204 2kat_A Uncharacterized protein 97.7 0.00018 6.3E-09 55.5 9.2 93 468-562 3-99 (115)
205 2kc7_A BFR218_protein; tetratr 97.7 0.00023 7.8E-09 53.1 9.3 62 494-555 8-72 (99)
206 3n71_A Histone lysine methyltr 97.7 0.00013 4.3E-09 72.2 9.3 120 394-513 318-462 (490)
207 3qww_A SET and MYND domain-con 97.6 0.00034 1.2E-08 68.0 11.8 99 462-560 310-429 (433)
208 1na3_A Designed protein CTPR2; 97.6 0.00089 3.1E-08 48.7 10.7 60 419-478 12-71 (91)
209 3ma5_A Tetratricopeptide repea 97.6 0.00033 1.1E-08 52.5 8.3 65 415-479 6-70 (100)
210 3qwp_A SET and MYND domain-con 97.5 0.00099 3.4E-08 64.8 13.0 101 460-560 297-418 (429)
211 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00098 3.3E-08 50.3 9.8 75 485-559 4-87 (104)
212 1zu2_A Mitochondrial import re 97.4 0.00028 9.6E-09 57.1 6.8 91 428-521 14-127 (158)
213 3bee_A Putative YFRE protein; 97.4 0.0014 4.9E-08 48.0 10.0 71 483-553 3-78 (93)
214 1pc2_A Mitochondria fission pr 97.3 0.0016 5.4E-08 52.1 9.9 94 466-561 14-114 (152)
215 1klx_A Cysteine rich protein B 97.3 0.0053 1.8E-07 49.0 13.0 110 158-275 9-127 (138)
216 2kc7_A BFR218_protein; tetratr 97.2 0.00049 1.7E-08 51.3 5.8 85 458-552 8-95 (99)
217 3mkq_A Coatomer beta'-subunit; 96.9 0.024 8.1E-07 60.6 17.5 155 152-341 607-762 (814)
218 1nzn_A CGI-135 protein, fissio 96.9 0.018 6E-07 44.2 11.5 96 464-561 15-117 (126)
219 3mkq_A Coatomer beta'-subunit; 96.7 0.12 3.9E-06 55.2 21.2 131 354-513 633-763 (814)
220 3mkq_B Coatomer subunit alpha; 96.7 0.2 6.8E-06 41.0 17.0 129 393-544 13-141 (177)
221 3ly7_A Transcriptional activat 96.6 0.017 5.9E-07 53.8 11.7 74 446-522 273-347 (372)
222 3qww_A SET and MYND domain-con 96.6 0.0051 1.7E-07 59.7 8.6 85 429-513 311-409 (433)
223 3lvg_A Clathrin heavy chain 1; 96.5 0.0013 4.5E-08 62.5 3.2 145 112-267 53-221 (624)
224 3qwp_A SET and MYND domain-con 96.5 0.0089 3.1E-07 58.0 9.2 85 393-477 295-398 (429)
225 3lvg_A Clathrin heavy chain 1; 96.4 0.0036 1.2E-07 59.6 5.4 184 75-265 80-324 (624)
226 1wy6_A Hypothetical protein ST 96.4 0.2 6.9E-06 38.5 13.7 85 397-483 73-157 (172)
227 3mkq_B Coatomer subunit alpha; 96.2 0.11 3.9E-06 42.5 12.9 103 222-341 13-115 (177)
228 3bee_A Putative YFRE protein; 96.1 0.084 2.9E-06 38.4 10.4 63 416-478 6-71 (93)
229 1pc2_A Mitochondria fission pr 96.0 0.074 2.5E-06 42.4 10.3 84 432-517 14-103 (152)
230 3u64_A Protein TP_0956; tetrat 95.6 0.029 9.9E-07 50.0 7.4 59 452-513 201-267 (301)
231 1wy6_A Hypothetical protein ST 95.6 0.56 1.9E-05 36.1 15.2 62 249-311 95-156 (172)
232 3u64_A Protein TP_0956; tetrat 95.5 0.48 1.6E-05 42.3 14.8 84 465-551 178-273 (301)
233 4h7y_A Dual specificity protei 95.4 0.19 6.6E-06 39.5 10.4 97 414-512 11-120 (161)
234 2v5f_A Prolyl 4-hydroxylase su 95.3 0.15 5E-06 38.0 9.6 62 452-513 7-73 (104)
235 3ffl_A Anaphase-promoting comp 95.0 0.19 6.6E-06 40.4 9.6 132 421-563 25-166 (167)
236 2wpv_A GET4, UPF0363 protein Y 94.7 2.4 8.3E-05 38.5 21.4 83 383-479 132-217 (312)
237 4h7y_A Dual specificity protei 94.6 0.54 1.9E-05 37.0 11.0 109 447-557 10-133 (161)
238 4b4t_P 26S proteasome regulato 94.5 3.7 0.00013 39.8 20.9 95 419-513 140-245 (445)
239 1y8m_A FIS1; mitochondria, unk 94.3 0.84 2.9E-05 35.6 11.4 79 483-561 36-120 (144)
240 4b4t_P 26S proteasome regulato 94.3 2.4 8.2E-05 41.1 17.6 161 387-548 139-325 (445)
241 3o48_A Mitochondria fission 1 94.0 0.52 1.8E-05 36.2 9.5 79 483-561 37-121 (134)
242 1nzn_A CGI-135 protein, fissio 93.7 0.28 9.4E-06 37.6 7.6 86 430-517 15-106 (126)
243 3lpz_A GET4 (YOR164C homolog); 93.7 4.1 0.00014 37.3 21.8 126 339-478 83-215 (336)
244 3txn_A 26S proteasome regulato 93.4 4.1 0.00014 38.5 16.8 24 422-445 105-128 (394)
245 3ffl_A Anaphase-promoting comp 93.4 0.61 2.1E-05 37.5 9.3 128 386-527 21-164 (167)
246 4ady_A RPN2, 26S proteasome re 93.0 11 0.00036 40.0 34.6 270 253-528 382-671 (963)
247 4ady_A RPN2, 26S proteasome re 93.0 11 0.00037 40.0 30.1 117 427-545 535-656 (963)
248 1zbp_A Hypothetical protein VP 91.8 3 0.0001 36.6 12.4 124 424-553 5-135 (273)
249 3txn_A 26S proteasome regulato 91.1 10 0.00035 35.7 20.9 90 390-479 104-210 (394)
250 1qsa_A Protein (soluble lytic 90.8 15 0.00052 37.1 32.0 336 182-560 10-357 (618)
251 2wpv_A GET4, UPF0363 protein Y 90.2 11 0.00036 34.3 21.3 167 115-307 35-215 (312)
252 2ff4_A Probable regulatory pro 90.0 2.3 7.9E-05 40.4 11.2 73 419-491 174-250 (388)
253 4gns_B Protein CSD3, chitin bi 89.9 2.7 9.2E-05 43.5 12.1 49 516-565 611-659 (754)
254 3lpz_A GET4 (YOR164C homolog); 89.6 12 0.00041 34.2 22.5 132 115-257 37-179 (336)
255 4fhn_B Nucleoporin NUP120; pro 89.4 11 0.00037 41.7 17.4 185 355-547 817-1050(1139)
256 4gns_B Protein CSD3, chitin bi 89.4 2 7E-05 44.4 10.7 124 149-272 253-398 (754)
257 4fhn_B Nucleoporin NUP120; pro 88.7 18 0.00062 40.0 18.5 124 218-343 816-966 (1139)
258 2ff4_A Probable regulatory pro 86.5 16 0.00053 34.6 14.5 70 319-389 175-249 (388)
259 1v54_E Cytochrome C oxidase po 85.7 6.5 0.00022 28.4 8.2 61 432-494 26-87 (109)
260 3o48_A Mitochondria fission 1 85.4 3.8 0.00013 31.5 7.5 71 446-517 36-110 (134)
261 1v54_E Cytochrome C oxidase po 84.2 7.8 0.00027 28.0 8.1 62 260-322 25-86 (109)
262 1y8m_A FIS1; mitochondria, unk 82.8 15 0.00051 28.6 10.4 70 447-517 36-109 (144)
263 2uwj_G Type III export protein 81.7 12 0.00042 26.8 9.9 88 193-285 20-107 (115)
264 2p58_C Putative type III secre 81.1 13 0.00045 26.8 10.8 88 193-285 21-108 (116)
265 1wdy_A 2-5A-dependent ribonucl 80.5 15 0.00052 32.4 11.4 52 84-139 8-62 (285)
266 4b4t_R RPN7, 26S proteasome re 78.9 17 0.00059 34.9 11.6 93 387-479 133-237 (429)
267 2y69_E Cytochrome C oxidase su 78.8 14 0.00048 28.4 8.2 59 434-494 71-130 (152)
268 3ltm_A Alpha-REP4; protein eng 77.9 29 0.001 29.0 19.5 142 111-260 31-172 (211)
269 1zbp_A Hypothetical protein VP 77.6 8.4 0.00029 33.8 7.9 52 460-513 7-58 (273)
270 3ltj_A Alpharep-4; protein eng 77.5 29 0.001 28.7 20.2 141 112-260 27-167 (201)
271 2uwj_G Type III export protein 77.1 18 0.00061 26.0 9.2 87 365-455 21-107 (115)
272 2y69_E Cytochrome C oxidase su 76.9 16 0.00055 28.1 8.1 62 260-322 68-129 (152)
273 2p58_C Putative type III secre 76.3 19 0.00065 25.9 10.1 87 365-455 22-108 (116)
274 4b4t_R RPN7, 26S proteasome re 72.7 33 0.0011 32.8 11.7 58 249-306 135-194 (429)
275 1wdy_A 2-5A-dependent ribonucl 71.5 20 0.00067 31.6 9.4 115 118-240 7-128 (285)
276 3ltm_A Alpha-REP4; protein eng 70.9 45 0.0015 27.8 20.4 60 484-545 124-183 (211)
277 3bqo_A Telomeric repeat-bindin 70.6 21 0.00072 29.4 7.9 63 502-564 94-163 (211)
278 3ltj_A Alpharep-4; protein eng 68.9 48 0.0016 27.3 20.5 153 384-546 27-179 (201)
279 1k1a_A B-cell lymphoma 3-encod 67.8 40 0.0014 28.6 10.4 55 85-139 13-69 (241)
280 3esl_A Checkpoint serine/threo 64.6 61 0.0021 27.0 10.2 55 430-485 93-149 (202)
281 1k1a_A B-cell lymphoma 3-encod 62.2 54 0.0019 27.8 10.2 84 153-240 15-102 (241)
282 3kea_A K1L; tropism, ANK repea 59.6 50 0.0017 29.3 9.6 51 85-139 35-85 (285)
283 3bu8_A Telomeric repeat-bindin 53.3 19 0.00064 30.1 4.8 32 528-559 124-155 (235)
284 2d2s_A Exocyst complex compone 53.0 57 0.0019 28.1 8.2 23 150-172 24-46 (235)
285 3eu9_A Huntingtin-interacting 52.1 63 0.0022 27.2 8.8 16 122-137 48-63 (240)
286 3ygs_P Procaspase 9; apoptosis 51.2 32 0.0011 24.7 5.4 65 99-165 25-89 (97)
287 3eiq_C Programmed cell death p 50.7 1.5E+02 0.0053 27.3 14.0 58 388-445 220-282 (358)
288 3hra_A Ankyrin repeat family p 49.7 53 0.0018 26.9 7.6 17 123-139 12-28 (201)
289 1qsa_A Protein (soluble lytic 49.3 2.2E+02 0.0076 28.7 38.6 283 99-413 57-347 (618)
290 4b4t_S RPN3, 26S proteasome re 48.1 54 0.0018 32.1 7.9 25 452-476 233-257 (523)
291 3eu9_A Huntingtin-interacting 47.0 47 0.0016 28.0 7.1 203 124-343 17-235 (240)
292 2qx5_A Nucleoporin NIC96; mRNA 46.5 2.5E+02 0.0086 28.5 22.8 216 321-551 300-570 (661)
293 2wvi_A Mitotic checkpoint seri 46.3 1E+02 0.0034 24.7 8.0 50 435-485 79-130 (164)
294 4b4t_S RPN3, 26S proteasome re 46.1 1.1E+02 0.0037 29.9 9.7 25 146-170 233-257 (523)
295 1oyz_A Hypothetical protein YI 45.1 1.6E+02 0.0053 25.7 24.4 83 211-296 139-222 (280)
296 4g8k_A 2-5A-dependent ribonucl 44.9 94 0.0032 28.1 9.2 56 82-141 26-84 (337)
297 4a1g_A Mitotic checkpoint seri 44.8 1.1E+02 0.0039 24.0 9.3 50 434-484 83-134 (152)
298 2ion_A PDCD4, programmed cell 44.4 1.1E+02 0.0036 24.2 7.9 62 217-278 12-78 (152)
299 3t8k_A Uncharacterized protein 44.3 85 0.0029 25.6 7.9 25 255-279 45-69 (186)
300 1n11_A Ankyrin; clathrin, BAND 44.2 1.8E+02 0.0062 27.4 11.5 18 222-239 118-135 (437)
301 3jxi_A Vanilloid receptor-rela 44.0 17 0.00057 31.7 3.7 55 152-206 10-73 (260)
302 2cfu_A SDSA1; SDS-hydrolase, l 42.7 57 0.0019 33.3 7.7 62 502-566 436-497 (658)
303 2d2s_A Exocyst complex compone 42.3 1E+02 0.0035 26.5 8.1 29 484-512 89-117 (235)
304 2nsz_A Programmed cell death p 41.8 1.1E+02 0.0039 23.2 9.3 61 218-278 11-76 (129)
305 2p1h_A APAF-1, apoptotic prote 41.4 71 0.0024 22.5 6.0 63 97-163 24-86 (94)
306 1ug3_A EIF4GI, eukaryotic prot 41.3 2.1E+02 0.0072 26.1 11.0 23 219-241 16-38 (339)
307 4aez_C MAD3, mitotic spindle c 39.6 1.3E+02 0.0045 25.5 8.0 51 433-484 131-183 (223)
308 3b7b_A Euchromatic histone-lys 39.1 87 0.003 26.4 7.5 51 85-139 15-67 (237)
309 4gq2_M Nucleoporin NUP120; bet 37.5 3.4E+02 0.012 29.1 13.0 131 220-364 816-950 (950)
310 3ljn_A Hypothetical protein; a 37.4 54 0.0019 30.2 6.3 83 83-170 22-107 (364)
311 3hra_A Ankyrin repeat family p 36.6 1.2E+02 0.0042 24.5 7.9 79 154-239 12-94 (201)
312 3mv2_A Coatomer subunit alpha; 36.4 2.4E+02 0.0083 25.5 12.7 24 526-549 215-238 (325)
313 2nsz_A Programmed cell death p 34.8 1.3E+02 0.0045 22.8 6.9 27 388-414 10-36 (129)
314 1bpo_A Protein (clathrin); cla 34.4 3.2E+02 0.011 26.3 11.7 127 378-513 354-483 (494)
315 4gq2_M Nucleoporin NUP120; bet 34.0 3.1E+02 0.011 29.4 12.0 129 117-259 814-950 (950)
316 2rfa_A Transient receptor pote 33.9 1.7E+02 0.0057 24.4 8.5 24 288-311 159-182 (232)
317 3kea_A K1L; tropism, ANK repea 33.0 1.3E+02 0.0044 26.5 7.8 20 286-305 164-183 (285)
318 3esl_A Checkpoint serine/threo 32.7 2.2E+02 0.0074 23.7 10.8 69 146-215 82-151 (202)
319 2fe3_A Peroxide operon regulat 31.7 1.4E+02 0.0047 23.2 6.8 37 294-330 35-71 (145)
320 3bu8_A Telomeric repeat-bindin 30.2 2E+02 0.0068 24.2 7.3 19 495-513 123-141 (235)
321 2ion_A PDCD4, programmed cell 29.9 1.4E+02 0.0049 23.4 6.5 65 248-313 12-78 (152)
322 2ijq_A Hypothetical protein; s 29.3 1.6E+02 0.0053 23.5 6.5 52 156-207 44-103 (161)
323 2fu4_A Ferric uptake regulatio 28.8 1.4E+02 0.0046 20.2 6.9 61 168-229 6-67 (83)
324 3ljn_A Hypothetical protein; a 28.3 1.6E+02 0.0054 27.0 7.8 90 118-212 22-114 (364)
325 2fe3_A Peroxide operon regulat 28.1 1E+02 0.0035 24.0 5.4 38 192-229 34-71 (145)
326 2r9g_A AAA ATPase, central reg 27.5 2.6E+02 0.009 23.1 10.7 31 258-289 27-57 (204)
327 1bd8_A P19INK4D CDK4/6 inhibit 27.5 85 0.0029 24.2 5.1 19 221-239 105-123 (156)
328 4g8k_A 2-5A-dependent ribonucl 27.5 2.6E+02 0.0089 25.0 9.1 56 118-178 27-86 (337)
329 2zu6_B Programmed cell death p 26.2 3.6E+02 0.012 24.2 12.1 65 419-484 169-235 (307)
330 3aji_A 26S proteasome non-ATPa 26.2 2.3E+02 0.008 23.4 8.1 15 224-238 113-127 (231)
331 3ygs_P Procaspase 9; apoptosis 26.0 94 0.0032 22.2 4.4 37 228-264 51-87 (97)
332 3twr_A Tankyrase-2; ankyrin re 25.8 2.3E+02 0.0079 21.8 7.8 18 121-138 13-30 (165)
333 3eiq_C Programmed cell death p 25.7 4E+02 0.014 24.6 13.6 74 353-427 220-295 (358)
334 2zu6_B Programmed cell death p 25.2 3.7E+02 0.013 24.1 11.1 22 220-241 9-30 (307)
335 4fke_A Aminopeptidase N; zinc 25.0 6.5E+02 0.022 26.8 16.7 156 184-343 691-859 (909)
336 2xig_A Ferric uptake regulatio 24.1 2.1E+02 0.0071 22.3 6.6 36 295-330 41-76 (150)
337 2rfa_A Transient receptor pote 23.9 1.9E+02 0.0063 24.1 7.0 53 323-376 159-220 (232)
338 2xig_A Ferric uptake regulatio 23.8 1.3E+02 0.0043 23.6 5.2 59 170-229 18-76 (150)
339 2fu4_A Ferric uptake regulatio 23.5 1.7E+02 0.0059 19.6 6.8 23 332-354 34-56 (83)
340 3u7d_B Protein HEG homolog 1; 23.3 26 0.00089 17.2 0.6 11 4-14 3-13 (26)
341 1ug3_A EIF4GI, eukaryotic prot 23.1 4.3E+02 0.015 24.0 10.3 23 82-104 15-37 (339)
342 2p1h_A APAF-1, apoptotic prote 23.1 2E+02 0.0067 20.1 6.8 60 199-262 25-84 (94)
343 3b7b_A Euchromatic histone-lys 22.9 1.5E+02 0.0052 24.8 6.2 18 121-138 16-33 (237)
344 1bd8_A P19INK4D CDK4/6 inhibit 22.7 81 0.0028 24.3 4.0 19 221-239 72-90 (156)
345 3pvs_A Replication-associated 22.6 5.1E+02 0.017 24.7 13.7 38 327-364 267-304 (447)
346 3jxi_A Vanilloid receptor-rela 22.5 1.8E+02 0.0063 24.7 6.8 23 291-313 13-35 (260)
347 4ets_A Ferric uptake regulatio 22.4 2.3E+02 0.0078 22.5 6.6 54 307-361 25-80 (162)
348 1ya0_A SMG-7 transcript varian 22.3 1.7E+02 0.0058 28.6 6.8 48 519-566 153-200 (497)
349 2o03_A Probable zinc uptake re 21.7 1.8E+02 0.0063 21.9 5.7 44 321-364 16-59 (131)
350 1mzb_A Ferric uptake regulatio 21.5 2.7E+02 0.0092 21.1 6.7 60 168-228 7-67 (136)
351 3bge_A Predicted ATPase; struc 21.0 3.6E+02 0.012 22.3 9.6 37 251-287 10-49 (201)
352 1n11_A Ankyrin; clathrin, BAND 20.8 3.3E+02 0.011 25.5 8.8 167 84-263 17-194 (437)
353 4ets_A Ferric uptake regulatio 20.8 1.7E+02 0.0057 23.3 5.4 43 288-330 40-84 (162)
354 2w57_A Ferric uptake regulatio 20.8 3E+02 0.01 21.4 7.2 62 168-230 6-68 (150)
355 2w57_A Ferric uptake regulatio 20.7 2.8E+02 0.0097 21.5 6.7 35 365-399 32-66 (150)
356 2o03_A Probable zinc uptake re 20.6 1.2E+02 0.004 23.0 4.4 42 150-191 16-57 (131)
357 3eyy_A Putative iron uptake re 20.5 1.4E+02 0.0049 23.1 4.9 35 195-229 33-67 (145)
358 3ctd_A Putative ATPase, AAA fa 20.4 3.8E+02 0.013 22.4 10.5 46 247-292 34-82 (213)
359 2rg8_A Programmed cell death p 20.1 1E+02 0.0036 24.7 4.0 24 219-242 15-38 (165)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-41 Score=354.09 Aligned_cols=480 Identities=8% Similarity=-0.029 Sum_probs=413.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCC--CCCcchHHHHHHHH
Q 036165 77 SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KTNIHRWIALTGAY 154 (566)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 154 (566)
+...|..++..+.+.|++++|..+++.++... |+..++..++..|.+.|++++|..+|+.+. .++..+|+.++.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 45678999999999999999999999998654 677888999999999999999999999984 47888999999999
Q ss_pred HhcCChHHHHHHHHHhHHC---------------CCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQ---------------GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 219 (566)
.+.|++++|+++|+++... |.+++..+++.++.++.+.|++++|.++|+++.+.+ +.+...+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 9999999999999954322 223457889999999999999999999999999875 335556666
Q ss_pred HHHHHHhcCCHHHHHHH---HHhcCCC----ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc
Q 036165 220 LIDMYSKCGSVEKAKKV---FDEMVEK----DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~---~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 292 (566)
+...+...++.+.+... +..+... ...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++..+.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 66555444332222111 2222222 2345677788899999999999999999865 6899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 036165 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372 (566)
Q Consensus 293 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 372 (566)
.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998875 3478899999999999999999999999998653 56788999999999999999999999
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 036165 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449 (566)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 449 (566)
++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+..+.+
T Consensus 396 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 396 FSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999987543 688999999999999999999999998764 578899999999999999999999999999888889
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKY---KIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWG 522 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 522 (566)
..+|+.++.++.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++. .+.+..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999999999998652 45677 6899999999999999999999999987 345889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
.++.+|.+.|++++|.+.++++++.+|+++..+..|+++|..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.7e-40 Score=341.73 Aligned_cols=433 Identities=11% Similarity=-0.049 Sum_probs=340.9
Q ss_pred hhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHH
Q 036165 124 TECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203 (566)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 203 (566)
.+.|....+...++.++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.++...|++++|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3445555566666666666666677777777777777777777777664 34566666667777777777777777776
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------------ChhhHHHHHHHHHHcCChhHH
Q 036165 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-------------------DIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 204 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~a 264 (566)
++... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 66432 456666777777777777777777777754332 256677777777777777777
Q ss_pred HHHHHHhhhCCC-------------------------------------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036165 265 LNLVEEIGTPRV-------------------------------------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307 (566)
Q Consensus 265 ~~~~~~m~~~~~-------------------------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (566)
+++|++|.+.+. .+...+|+.++..|.+.|++++|.++|+++.
T Consensus 220 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 777777665431 1122234444667778899999999999988
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhH
Q 036165 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387 (566)
Q Consensus 308 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 387 (566)
+. .++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+... .+..+
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 375 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVT 375 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHH
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHH
Confidence 76 5799999999999999999999999999999865 44777899999999999999999999999997653 47889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
+..++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|..++.+|.+.|
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 99999999999999999999998764 567899999999999999999999999999888889999999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCC--HHHHHHHHHHHHhcCCHH
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-------TEPD--LFVWGALLGACKNHGNIE 535 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~g~~~ 535 (566)
++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|+++
T Consensus 456 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 999999999999976 34578899999999999999999999999985 2576 789999999999999999
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 536 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+|...++++++.+|+++..+..++++|...|
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999876
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5e-29 Score=244.87 Aligned_cols=373 Identities=11% Similarity=0.060 Sum_probs=257.3
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCC-cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQN-IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
...+.+.|++++|++.++++.+. .|+ ...+..+...+...|++++|...++..++.. +.+...+..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44556667777777776666554 233 3344444455556666666666666665543 3445556666666666666
Q ss_pred HHHHHHHHHhcC---CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 230 VEKAKKVFDEMV---EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 230 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
+++|.+.|+++. ..+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666665552 1233345555555555555555555555554432 112233334444444445555555555444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHh
Q 036165 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386 (566)
Q Consensus 307 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 386 (566)
.+. . +.+..++..+...+...|++++|...++++.+.++. +..
T Consensus 162 l~~-----------------------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T 1w3b_A 162 IET-----------------------------------Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp HHH-----------------------------------C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHh-----------------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHH
Confidence 433 1 222344444444555555555555555555544332 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
.+..+...+...|++++|...|++..+ .+..++..+..++...|++++|.+.|+++.+..+.+..++..+..++.+.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 667777778888888888888776653 35678888899999999999999999999987777888999999999999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-T-EPDLFVWGALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (566)
|++++|.+.++++.+. .+.+..++..++.++.+.|++++|.+.++++. . +.+..++..++.++.+.|++++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999975 45678899999999999999999999999987 2 345788999999999999999999999
Q ss_pred HHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 542 KHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 542 ~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+++++.+|+++..+..++.+|...|
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999998765
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.5e-27 Score=230.31 Aligned_cols=353 Identities=10% Similarity=0.004 Sum_probs=253.8
Q ss_pred HHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh
Q 036165 119 LITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195 (566)
Q Consensus 119 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 195 (566)
+...+.+.|++++|.+.++.+.+ | +...+..+...+...|++++|...++...+. .+.+..++..+...+...|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 34567789999999999987643 3 5567888888999999999999999998876 345778999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 196 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
++|.+.++++++.. +.+...+..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999874 44566899999999999999999999999843 3 45678888899999999999999999998
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036165 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352 (566)
Q Consensus 273 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 352 (566)
... +-+..++..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|+..+++..+.. +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 753 3457788999999999999999999999998763 3356778888888889999999999888887653 233455
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANH 429 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (566)
+..+..++...|++++|...++.+.+..+. +..++..+..+|.+.|++++|...|+++.+ .+..+|..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 566666666666666666666666554322 334444555555555555555555544432 2334444444444445
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
|++++|.+.++++.+..+.+..++..+..++.+.|++++|...++++.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555554444434444444444444444555555555444444
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3e-29 Score=250.48 Aligned_cols=215 Identities=11% Similarity=0.162 Sum_probs=136.5
Q ss_pred HHHHHHHHHhHHCCCCCCcc-hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 161 QEAVTVFHEMHIQGLKQNIF-VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 161 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (566)
..+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34555667777776655443 57788888888888888999999888888888888888888888876653211
Q ss_pred cCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 036165 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319 (566)
Q Consensus 240 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 319 (566)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1223345666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (566)
.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.|..|+..+|+.++..|..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.8e-28 Score=243.53 Aligned_cols=186 Identities=13% Similarity=0.176 Sum_probs=127.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCC---------hhHHHHHHHHHHHcCCCCchhH
Q 036165 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD---------IGTGEKIHSLVLKHSFGTDAFV 216 (566)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 216 (566)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 5788899999999999999999999999999999999999999987654 5678888888888888777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCH
Q 036165 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296 (566)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 296 (566)
|+.||++|++.|++++|. ++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 108 yn~lI~~~~~~g~~~~A~-------------------------------~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAF-------------------------------DMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHTCHHHHH-------------------------------HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCHHHHH-------------------------------HHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 766666665555555554 4555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036165 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362 (566)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 362 (566)
++|.++|++|.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..|++.++..|+.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555555555555555544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.3e-25 Score=227.37 Aligned_cols=280 Identities=11% Similarity=-0.050 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHhc---CCCHHHHHHHHHHHHH-----cCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 280 VVTWNTLISGFSK---SGDQVMVSKLFQLMRA-----KGVE--------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 280 ~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
...+......+.. .|++++|...++++.+ .... .+...+..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444443 8999999999999887 3112 2356788888999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH
Q 036165 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWN 420 (566)
Q Consensus 344 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 420 (566)
.. |+...+..+...+...|+++.|...++.+.+.... +...+..+...|...|++++|...|++..+ .+...+.
T Consensus 266 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 266 LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHH
Confidence 65 33778888999999999999999999999886543 667888999999999999999999998753 4567888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLL 496 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 496 (566)
.+...+...|++++|...++++.+..+.+..++..+..++...|++++|...++++.+...-.++ ...+..++.+|
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887778889999999999999999999999999875222222 33889999999
Q ss_pred Hh---cCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 497 GR---AGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 497 ~~---~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.+ .|++++|...++++. .+.+..++..+...|.+.|++++|...++++++.+|+++.....+....
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99 999999999999987 3456888999999999999999999999999999999999888776544
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2e-23 Score=214.21 Aligned_cols=433 Identities=11% Similarity=0.015 Sum_probs=292.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHc
Q 036165 114 QIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190 (566)
Q Consensus 114 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 190 (566)
..+..+...+.+.|++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 3445555555566666666666655433 244555566666666666666666666665542 223445555555555
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHHcCChhHH
Q 036165 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK------DIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a 264 (566)
..|++++|...++ .... .|+. ....+..+...+....|...++.+... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 6666666666654 2221 1111 111222333344445555555555332 111222333344444444444
Q ss_pred HHHHHHhhhCCCCccHH-HHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCCCC--------hhhHHHHHHHHHh
Q 036165 265 LNLVEEIGTPRVKPNVV-TWNTLISGFSKS--------GDQVMVSKLFQLMRAKGVEPD--------VVSWTSVISGLVH 327 (566)
Q Consensus 265 ~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~--------~~~~~~li~~~~~ 327 (566)
...+...... .+... ....+...+... |++++|..+++.+.+. .|+ ..++..+...+..
T Consensus 180 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 4433332221 22221 222233333222 4788999999998875 333 2356777788899
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
.|++++|...+++..+. .|+...+..+...+...|+++.|...+..+.+..+. +..++..+...|...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999986 456788889999999999999999999999987654 678899999999999999999999
Q ss_pred HHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 036165 408 FDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484 (566)
Q Consensus 408 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 484 (566)
|++..+ .+...|..+...+...|++++|...++++.+..+.+...+..+..++...|++++|...++++.+...-.+
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 998764 45678999999999999999999999999998888888999999999999999999999999886521111
Q ss_pred C----hhHHHHHHHHHHhc----------CCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 485 R----TEHYACMVDLLGRA----------GRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 485 ~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+ ...+..+..+|.+. |++++|...++++. .+.+..++..+...|.+.|++++|...++++++..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 12244556778888 99999999999987 34568889999999999999999999999999999
Q ss_pred CCCchHHHHHH
Q 036165 549 PESAANNMLLT 559 (566)
Q Consensus 549 p~~~~~~~~l~ 559 (566)
|+++.....+.
T Consensus 493 ~~~~~~~~~~~ 503 (537)
T 3fp2_A 493 RTMDEKLQATT 503 (537)
T ss_dssp --CHHHHHHHH
T ss_pred CCcHHHHHHHh
Confidence 99887755443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2e-23 Score=209.19 Aligned_cols=307 Identities=12% Similarity=0.020 Sum_probs=214.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 327 (566)
+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+...+..+..+|..
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 3444444444444444444444443321 2233444444444444444444444444444432 1233444444444555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHH------------HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTS----ATIS------------SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~----~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 391 (566)
.|++++|...|+++.+.. |+. ..+. .+...+...|++++|...++.+.+..+. +...+..+
T Consensus 107 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 183 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELR 183 (450)
T ss_dssp TTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 555555555555544331 221 2222 2234467778888888888888776543 67778888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHH------------
Q 036165 392 VDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAV------------ 456 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------ 456 (566)
+.+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|...|+++.+..+.+...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998888764 5677888899999999999999999999987766666666555
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHH
Q 036165 457 LTACCHVGLVELGQRLFNMMQEKYKIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACK 529 (566)
Q Consensus 457 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 529 (566)
+.++...|++++|...++++.+. .|+ ...+..++.++.+.|++++|...++++. .+.+..+|..++.+|.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 88999999999999999999975 344 4478889999999999999999999986 3457899999999999
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999553
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-23 Score=212.04 Aligned_cols=431 Identities=9% Similarity=-0.018 Sum_probs=316.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHH
Q 036165 79 AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYA 155 (566)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 155 (566)
+.+......+...|+++.|...++.+++.. |++.++..+...|.+.|++++|...|+++.+ .+..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456677788889999999999999999987 6888999999999999999999999987754 35678999999999
Q ss_pred hcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHH---HHHHHhcCCHHH
Q 036165 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL---IDMYSKCGSVEK 232 (566)
Q Consensus 156 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~g~~~~ 232 (566)
+.|++++|+..|+++...+. ++......++..+........+.+.+..+...+..|+......- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988753 34444445554444333333333333222222111111111000 011111111222
Q ss_pred HHHHHHhcC---------CC-ChhhHHHHHHHHHH---cCChhHHHHHHHHhhh-----CCC--------CccHHHHHHH
Q 036165 233 AKKVFDEMV---------EK-DIVAMNAMVSGYVQ---RGLATEALNLVEEIGT-----PRV--------KPNVVTWNTL 286 (566)
Q Consensus 233 A~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~--------~p~~~~~~~l 286 (566)
+...+.... .+ +...+......+.. .|++++|...|+++.. ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222222221 11 23445455555554 7899999999998876 311 2235677788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch
Q 036165 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366 (566)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 366 (566)
...+...|++++|...++.+.+.... ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 88899999999999999998887433 8888889999999999999999999998764 45667888888999999999
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 036165 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQME 443 (566)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 443 (566)
++|...++.+.+.... +...+..+...|.+.|++++|...++++.+ .+...+..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999887654 567888899999999999999999998764 456788889999999999999999999998
Q ss_pred hcCCCC------HHHHHHHHHHHhc---cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 036165 444 ERKKLD------HLSFTAVLTACCH---VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS- 513 (566)
Q Consensus 444 ~~~~~~------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 513 (566)
+..+.+ ...+..+..++.. .|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 763322 3489999999999 99999999999999875 24457788899999999999999999999887
Q ss_pred CCCCH
Q 036165 514 TEPDL 518 (566)
Q Consensus 514 ~~p~~ 518 (566)
..|+.
T Consensus 478 ~~~~~ 482 (514)
T 2gw1_A 478 LARTM 482 (514)
T ss_dssp HCSSH
T ss_pred hcccc
Confidence 34543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.8e-22 Score=200.90 Aligned_cols=346 Identities=9% Similarity=-0.037 Sum_probs=200.1
Q ss_pred CcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 036165 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSG 254 (566)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 254 (566)
+...+..+...+...|++++|..+++++++.. +.+..++..+..++...|++++|...|+++.+ .+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34455555566666666666666666666542 33455566666666666666666666665522 234555666666
Q ss_pred HHHcCChhHHHHHHHHhhhCCCCccH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036165 255 YVQRGLATEALNLVEEIGTPRVKPNV---VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331 (566)
Q Consensus 255 ~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 331 (566)
+.+.|++++|...|+++.... +.+. ..+..+...+.. ..+..+...+...|++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 666666666666666665432 1122 334333222000 0011112335555555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.... +..++..++.+|.+.|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555432 334445555555555555555555555555554322 4455555666666666666666666555
Q ss_pred CC--C-ChhHHHHH------------HHHHHhcCChHHHHHHHHHhhhcCCCC----HHHHHHHHHHHhccCChHHHHHH
Q 036165 412 SE--R-NTVTWNSM------------IFGCANHGYCDEAIELFNQMEERKKLD----HLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 412 ~~--~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.+ | +...+..+ ...+...|++++|...|+++.+..+.+ ...+..+..++.+.|++++|...
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 42 2 22223222 667777788888888888877754444 23677777788888888888888
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH------------HHhcC-----C
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGA------------CKNHG-----N 533 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~------------~~~~g-----~ 533 (566)
++++.+. .+.+...|..++.+|...|++++|...++++. ..| +...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 8887764 23356777788888888888888888888776 334 35555555532 33334 5
Q ss_pred HHHHHHHHHH-HhhhCCCCc
Q 036165 534 IELAEIAAKH-LSELEPESA 552 (566)
Q Consensus 534 ~~~A~~~~~~-~~~~~p~~~ 552 (566)
.+++.+.+++ +++..|++.
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 6777888886 667777653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.3e-21 Score=200.85 Aligned_cols=424 Identities=10% Similarity=0.025 Sum_probs=323.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHH
Q 036165 78 PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAY 154 (566)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 154 (566)
+..+......+...|+++.|...++.+++..+ .++..+..+...|.+.|++++|.+.|+++.+ .+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45677788899999999999999999999873 5778899999999999999999999998754 4677899999999
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF--GTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
...|++++|+..|+.+ .. .|+.. ...+..+...+....|...++.++.... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999744 22 22222 1123333444556788888888865410 1111112334555667778888
Q ss_pred HHHHHHhcCCCChh---hHHHHHHHHH--------HcCChhHHHHHHHHhhhCCCCcc------HHHHHHHHHHHhcCCC
Q 036165 233 AKKVFDEMVEKDIV---AMNAMVSGYV--------QRGLATEALNLVEEIGTPRVKPN------VVTWNTLISGFSKSGD 295 (566)
Q Consensus 233 A~~~~~~~~~~~~~---~~~~li~~~~--------~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~ 295 (566)
+...+......+.. ....+...+. ..|++++|..+++++.+...... ..++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 77777776554433 3333333222 22588999999999887532211 2356777788889999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (566)
+++|...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999887 4557888899999999999999999999998764 45677889999999999999999999999
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--C--
Q 036165 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK--L-- 448 (566)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-- 448 (566)
+.+..+. +...+..+..+|...|++++|...++++.+ .+...+..+...+...|++++|...|+++.+..+ +
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 9987654 567888899999999999999999998764 4567889999999999999999999999877621 1
Q ss_pred --CHHHHHHHHHHHhcc----------CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 449 --DHLSFTAVLTACCHV----------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 449 --~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
....+.....++... |++++|...++++.+. .+.+...+..+..+|.+.|++++|.+.++++.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 222345556677777 9999999999999976 24467889999999999999999999999987
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=8.3e-21 Score=183.78 Aligned_cols=312 Identities=12% Similarity=0.008 Sum_probs=231.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036165 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325 (566)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 325 (566)
..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344555555666666666666666655432 2334555556666666666666666666665542 22445566666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHccCchHHHHHHHHHHHHhCCCCcHhHHH
Q 036165 326 VHNFCNDEAFDTFKEMLSQGFCP----TSATISSI------------LPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 389 (566)
...|++++|...|++..+. .| +...+..+ ...+...|++++|...++.+.+..+. +...+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 6666666666666666554 23 22222222 46778888999999999888887543 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHH-----------
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA----------- 455 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------- 455 (566)
.+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..+..+.+...+..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 899999999999999999988765 467788889999999999999999999998876666665443
Q ss_pred -HHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 036165 456 -VLTACCHVGLVELGQRLFNMMQEKYKIMPRT----EHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGAC 528 (566)
Q Consensus 456 -l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 528 (566)
+...+...|++++|...++++.+. . +.+. ..+..+..+|.+.|++++|...++++. .+.+..+|..+...+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 366789999999999999999976 2 2223 235568899999999999999999987 344788999999999
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
...|++++|...++++++.+|+++.....|+.++..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999988754
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.9e-20 Score=176.89 Aligned_cols=282 Identities=13% Similarity=-0.004 Sum_probs=210.5
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036165 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358 (566)
Q Consensus 279 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 358 (566)
+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444555555666666666666666665542 2234455556666666677777777776666542 334555666666
Q ss_pred HHHccC-chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHH
Q 036165 359 ACASAA-NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 359 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 434 (566)
.+...| ++++|...++.+.+.... +...+..+..+|...|++++|...|++..+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 677777777766665432 456677788888888888888888877664 345667778888888999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHH
Q 036165 435 AIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK-------IMPRTEHYACMVDLLGRAGRLAEAYE 507 (566)
Q Consensus 435 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~ 507 (566)
|.+.++++.+..+.+...+..+...+...|++++|...++++.+... .+.....+..++.+|.+.|++++|..
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998887777888899999999999999999999998876521 13345688899999999999999999
Q ss_pred HHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 508 MIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 508 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.++++. .+.+..+|..+...+.+.|++++|...++++++.+|+++..+..++.+|.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 999876 34467788999999999999999999999999999999999999999884
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.5e-17 Score=166.46 Aligned_cols=348 Identities=13% Similarity=0.028 Sum_probs=182.9
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcc----cCChhHHHHHHHHHHHcCCCCc
Q 036165 142 TNIHRWIALTGAYAR----RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH----LSDIGTGEKIHSLVLKHSFGTD 213 (566)
Q Consensus 142 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 213 (566)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.+++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 456666666666666 667777777777766653 34455555555555 566677777776666654 3
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHH----cCChhHHHHHHHHhhhCCCCccHHHHH
Q 036165 214 AFVVSSLIDMYSK----CGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQ----RGLATEALNLVEEIGTPRVKPNVVTWN 284 (566)
Q Consensus 214 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 284 (566)
...+..|...|.. .+++++|.+.|++..+. +...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445556666655 56666666666665332 44455555555555 556666666666655543 344455
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036165 285 TLISGFSK----SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH----NFCNDEAFDTFKEMLSQGFCPTSATISSI 356 (566)
Q Consensus 285 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 356 (566)
.+...|.. .++.++|.+.+++..+.| +...+..+...|.. .+++++|...|++..+.| +......+
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 261 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 55555554 556666666666655543 34445555555554 555666666666555443 22333333
Q ss_pred HHHHHc----cCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-----CCHHHHHHHHHhcCC-CChhHHHHHHHHH
Q 036165 357 LPACAS----AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC-----GFISEARTLFDKMSE-RNTVTWNSMIFGC 426 (566)
Q Consensus 357 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 426 (566)
...+.. .++.++|...++...+.| +...+..+..+|... +++++|...|++..+ .+...+..+...|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 338 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY 338 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334433 455555555555554432 233444444444444 455555555554433 2333444444444
Q ss_pred HhcC---ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-
Q 036165 427 ANHG---YCDEAIELFNQMEERKKLDHLSFTAVLTACCH----VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR- 498 (566)
Q Consensus 427 ~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 498 (566)
...| +.++|.++|++..+. .+...+..+...+.. .+++++|...+++..+. + ++..+..|..+|.+
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred HhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcC
Confidence 4433 444555555554443 234444444444444 44555555555555443 2 23344444455544
Q ss_pred ---cCCHHHHHHHHHhcC
Q 036165 499 ---AGRLAEAYEMIKTMS 513 (566)
Q Consensus 499 ---~g~~~~A~~~~~~~~ 513 (566)
.+++++|...|++..
T Consensus 413 ~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp SSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 455555555555444
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3.4e-18 Score=165.36 Aligned_cols=327 Identities=6% Similarity=-0.076 Sum_probs=201.5
Q ss_pred cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 036165 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSGY 255 (566)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 255 (566)
...+..+...+...|++++|...++++++.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456667777788888888888888888764 45567778888888888888888888888732 3566788888888
Q ss_pred HHcCChhHHHHHHHHhhhCCCC--ccHHHHHHH------------HHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 036165 256 VQRGLATEALNLVEEIGTPRVK--PNVVTWNTL------------ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 321 (566)
...|++++|...+++..+.... .+...+..+ ...+...|++++|.+.++.+.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 8888888888888888764310 133333333 244444555555555555544431 2234444445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
..++...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...-
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~------ 232 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK------ 232 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH------
Confidence 555555555555555555554432 223334444444444444444444444444433221 111111000000
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHH----HHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL----SFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 402 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.......+...+...|++++|...++++.+..+.+.. .+..+..++...|++++|...++++.
T Consensus 233 -------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 233 -------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp -------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 0011123356677888888888888888876554543 35567778888899999999998888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKN 530 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~ 530 (566)
+. .+.+...+..++.+|.+.|++++|.+.++++. ..|+ ...+..+..+...
T Consensus 300 ~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 300 QM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred Hh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 75 23467788888888999999999999988877 3443 5556666555443
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=7.6e-20 Score=173.96 Aligned_cols=376 Identities=12% Similarity=0.107 Sum_probs=176.3
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHH
Q 036165 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204 (566)
Q Consensus 125 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 204 (566)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 667899999999999655 48999999999999999999999663 5777899999999999999999998887
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHH
Q 036165 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284 (566)
Q Consensus 205 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 284 (566)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 45577888899999999999998888764 67779999999999999999999999987 2588
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 364 (566)
.+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCC
Confidence 9999999999999999999987 37889999999999999999996655442 233344557888899999
Q ss_pred chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc--CCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhcCChHH
Q 036165 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC--GFISEARTLFDKMSE--------RNTVTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~ 434 (566)
.++++..+++..+... +.....|+-+..+|++- ++..+..+.|..-.. .+...|..+...|.+.++++.
T Consensus 222 ~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 222 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp CHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999999988655 44677788787777764 456666777664443 356689999999999999998
Q ss_pred HHHHHHHhhhc------------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 435 AIELFNQMEER------------KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 435 A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
|....-+-... ...|...|-..+..|. +....+..-+-..... .+. .+..+..+.+.|.+
T Consensus 301 A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~-~ld-----~~r~v~~~~~~~~l 372 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSP-RLD-----HTRAVNYFSKVKQL 372 (449)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGG-GCC-----HHHHHHHHHHTTCT
T ss_pred HHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh-ccC-----cHHHHHHHHHcCCc
Confidence 87643221110 1123334444444443 1112222222111111 111 13344555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 503 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (566)
.-+...++.+....+..+=.++-..|....|++.-..-++
T Consensus 373 ~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 373 PLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp TTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5555555555544455555666677778777766554443
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1.5e-17 Score=169.87 Aligned_cols=421 Identities=11% Similarity=0.079 Sum_probs=289.9
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC
Q 036165 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177 (566)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 177 (566)
++..++.. +.+...+..++.. .+.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44555554 3477788888884 778999999999998865 3 5567999999999999999999999999875 46
Q ss_pred CcchHHHHHHHH-cccCChhHHHH----HHHHHHHc-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHhcC
Q 036165 178 NIFVIPSVLKAC-GHLSDIGTGEK----IHSLVLKH-SFGT-DAFVVSSLIDMYSK---------CGSVEKAKKVFDEMV 241 (566)
Q Consensus 178 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 241 (566)
+...|...+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 776766666433 34567776665 67766553 5443 45677777776654 677888888888875
Q ss_pred C-CCh---hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH------HcC-
Q 036165 242 E-KDI---VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR------AKG- 310 (566)
Q Consensus 242 ~-~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~- 310 (566)
. |.. ..|..........|. ..+ ..++. .+.++++.|..++.... +..
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4 211 122222211100110 001 11110 12234555655555421 111
Q ss_pred --CCCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCc
Q 036165 311 --VEPD--------VVSWTSVISGLVHN----FCN----DEAFDTFKEMLSQGFCPTSATISSILPACAS-------AAN 365 (566)
Q Consensus 311 --~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~ 365 (566)
+.|+ ...|...+...... ++. .++..+|++.+... +.+...+......+.. .|+
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccc
Confidence 2332 23455444332222 222 36778888887752 4456677777776664 688
Q ss_pred hH-------HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h-hHHHHHHHHHHhcCChHH
Q 036165 366 MR-------RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RN-T-VTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 366 ~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~ 434 (566)
++ +|..+++..++.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|...+..+.+.|+.++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 76 8889998888632334688888999999999999999999998774 43 2 478888888889999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 435 AIELFNQMEERKKLDHLSFTAVLTA-CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 435 A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|.++|++..+..+.+...|...+.. +...|++++|..+|++..+. .+.++..|..++..+.+.|+.++|..+|+++.
T Consensus 375 A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 375 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 9999999988644444555443333 33589999999999999876 23467889999999999999999999999987
Q ss_pred C-CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 514 T-EP-D----LFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 514 ~-~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
. .| + ...|...+......|+.+.+..+.+++.+..|+
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2 22 2 448888898889999999999999999998885
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.1e-16 Score=161.76 Aligned_cols=348 Identities=12% Similarity=0.027 Sum_probs=161.4
Q ss_pred chHHHHHHHHHHhh----cCChHHHHHHhccCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHhHHCCCCCCcchH
Q 036165 112 LTQIATKLITFYTE----CQNIHHARMLFDEIPK-TNIHRWIALTGAYAR----RGYHQEAVTVFHEMHIQGLKQNIFVI 182 (566)
Q Consensus 112 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 182 (566)
++..+..+-..|.. .++++.|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 33444444444444 4555555555544332 234444455555554 455555555555554433 23333
Q ss_pred HHHHHHHcc----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHH
Q 036165 183 PSVLKACGH----LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK----CGSVEKAKKVFDEMVE-KDIVAMNAMVS 253 (566)
Q Consensus 183 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 253 (566)
..+...+.. .+++++|.+.+++..+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444433 445555555555555443 23344444444444 4455555555554422 23444444555
Q ss_pred HHHH----cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036165 254 GYVQ----RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK----SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325 (566)
Q Consensus 254 ~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 325 (566)
.|.. .++.++|+..|++..+.| +...+..+...+.. .+++++|..++++..+.| +...+..+...|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 5544 455555555555544432 23333344444443 445555555555544432 233444444444
Q ss_pred Hh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 326 VH----NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA-----ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 326 ~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.. .+++++|+..|++..+.| +...+..+...+... ++.++|...++...+.+ +...+..+..+|.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 44 455555555555554432 222333344444433 45555555555554443 2233444444444
Q ss_pred hcC---CHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cC
Q 036165 397 KCG---FISEARTLFDKMSE-RNTVTWNSMIFGCAN----HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH----VG 464 (566)
Q Consensus 397 ~~g---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 464 (566)
+.| +.++|...|++..+ .+...+..+...|.. .+++++|...|++..+. .+...+..+...+.. .+
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred hCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCC
Confidence 433 44555555544433 334444445555544 45555555555554443 133444444444444 45
Q ss_pred ChHHHHHHHHHhHHh
Q 036165 465 LVELGQRLFNMMQEK 479 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~ 479 (566)
++++|...|++..+.
T Consensus 418 d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 418 DYVQAWAWFDTASTN 432 (490)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC
Confidence 555555555555544
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.3e-17 Score=159.27 Aligned_cols=282 Identities=10% Similarity=-0.043 Sum_probs=173.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 327 (566)
+..++..+...|++++|+.+++++.... +.+...+..++..+...|++++|..+++++.+.. +.+...|..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3333444444444444444444443321 1122233333344444444444444444444331 1234444445555555
Q ss_pred cC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036165 328 NF-CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406 (566)
Q Consensus 328 ~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 406 (566)
.| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...|...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 55 5555555555554432 223444555555555555555555555555554433 34445557777777788888888
Q ss_pred HHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC---------CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036165 407 LFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK---------KLDHLSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 407 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
.+++..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++
T Consensus 181 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777654 345677778888888888888888888887652 4445788899999999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHH-HhcCCHH
Q 036165 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGAC-KNHGNIE 535 (566)
Q Consensus 475 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~-~~~g~~~ 535 (566)
++.+. . +.+...+..+..+|.+.|++++|.+.++++. ..| +...+..+..++ ...|+.+
T Consensus 261 ~a~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 261 QALVL-I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHH-S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhh-C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 98875 2 3456788889999999999999999999887 334 677777777777 4556543
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.2e-15 Score=161.72 Aligned_cols=420 Identities=10% Similarity=0.075 Sum_probs=288.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
..+|+......++|+..|.+.++.++++.++-.+ +..+....+.++....+. +.........+...-+ ..-+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~ 1057 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIAN 1057 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHH
Confidence 4667778888888888888889999888888442 124556677777666555 3444444444443222 344777
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 78888888999888888521 1122233332 667788888887754 346677788888888888888
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 233 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
|.+.|.+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 88888765 667778888888888888888888888766643 33222334788888888877544442 1 3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 45566777888888888888888888874 36888888888888888888888776 3567777788
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc--cCChHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH--VGLVELGQ 470 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~ 470 (566)
.++...|++..|...... ...+...+..++..|...|.+++|+.+++......+-....|.-+...+++ .++..++.
T Consensus 1258 ~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 888888888888887765 334555666788888888888888888887776544444456555555544 44555555
Q ss_pred HHHHHhHHhcCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHh-------------cC-CCCCHHHHHHHHHHHHh
Q 036165 471 RLFNMMQEKYKIMP------RTEHYACMVDLLGRAGRLAEAYEMIKT-------------MS-TEPDLFVWGALLGACKN 530 (566)
Q Consensus 471 ~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------~~-~~p~~~~~~~l~~~~~~ 530 (566)
+.|..-. .++| +...|.-++..|.+.|+++.|...+-+ .. ...++..|...+.-|..
T Consensus 1337 k~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1337 ELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 5554332 3333 456788888888888888888733221 11 22456666666666655
Q ss_pred cC---------------CHHHHHHHHH
Q 036165 531 HG---------------NIELAEIAAK 542 (566)
Q Consensus 531 ~g---------------~~~~A~~~~~ 542 (566)
.+ |++++.++++
T Consensus 1414 ~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1414 FKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 55 6677766666
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.3e-16 Score=163.01 Aligned_cols=419 Identities=13% Similarity=0.057 Sum_probs=290.6
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--CCcchHHHHH
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--TNIHRWIALT 151 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 151 (566)
.|.+...|..++.. ...|+++.|+.+++.+++.. +.+...+..++..+.+.|++++|+.+|++..+ |+...|...+
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 46677888888884 77899999999999999864 45778899999999999999999999998876 6666788777
Q ss_pred HHH-HhcCChHHHHH----HHHHhHHC-CCCC-CcchHHHHHHHHcc---------cCChhHHHHHHHHHHHcCCCCchh
Q 036165 152 GAY-ARRGYHQEAVT----VFHEMHIQ-GLKQ-NIFVIPSVLKACGH---------LSDIGTGEKIHSLVLKHSFGTDAF 215 (566)
Q Consensus 152 ~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~ 215 (566)
... ...|+++.|.+ +|++.... |..| +...|...+..... .|+++.|..+|++.++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 543 45688877765 77766543 5444 34566666665543 688999999999998832111123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHh------hhCC---CCcc-------
Q 036165 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI------GTPR---VKPN------- 279 (566)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~~---~~p~------- 279 (566)
.|..........|. ..+..++.. +.+++..|..++.++ .+.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 33333222111111 111111111 223455555555542 1111 2333
Q ss_pred -HHHHHHHHHHHhc----CCCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCChh-------HHHH
Q 036165 280 -VVTWNTLISGFSK----SGDQ----VMVSKLFQLMRAKGVEPDVVSWTSVISGLVH-------NFCND-------EAFD 336 (566)
Q Consensus 280 -~~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~ 336 (566)
...|...+..... .++. +.+..+|++.... .+.+...|...+..+.. .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 2344444332221 1232 3677788887765 24467788888877775 68877 8899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 036165 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R 414 (566)
Q Consensus 337 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 414 (566)
+|++..+.-.+.+...+..++..+.+.|++++|..+++.+++..+.....+|..++..+.+.|++++|..+|++..+ |
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 99988763234456778888888889999999999999998854331135788888888899999999999998875 2
Q ss_pred -ChhHHHHHHH-HHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHH
Q 036165 415 -NTVTWNSMIF-GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEHYA 490 (566)
Q Consensus 415 -~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 490 (566)
+...|...+. .+...|+.++|..+|++..+..+.+...|..++..+.+.|+.++|..+|+++.......|+ ...|.
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~ 467 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 467 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH
Confidence 2222322222 2336899999999999999887778889999999999999999999999999875223332 34788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
..+....+.|+.+.+..+.+++.
T Consensus 468 ~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 468 RFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888999999999998876
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2e-18 Score=167.82 Aligned_cols=248 Identities=10% Similarity=-0.081 Sum_probs=182.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 036165 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394 (566)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (566)
...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+..+. +...+..+..+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3445555556666666666666666665543 334455555556666666666666666666555432 45556666666
Q ss_pred HHhcCCHHHHHHHHHhcCC--CC-hhHHHH---------------HHHHHHhcCChHHHHHHHHHhhhcCCC--CHHHHH
Q 036165 395 YAKCGFISEARTLFDKMSE--RN-TVTWNS---------------MIFGCANHGYCDEAIELFNQMEERKKL--DHLSFT 454 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 454 (566)
|...|++++|...++++.+ |+ ...+.. .+..+...|++++|...|+++.+..+. +..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 6666666666666665543 11 111110 133333889999999999999987555 788999
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 532 (566)
.+..++...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++. .+.+..++..+..+|.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999875 24457889999999999999999999999987 3456888999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCC-----------chHHHHHHHHHhhcC
Q 036165 533 NIELAEIAAKHLSELEPES-----------AANNMLLTDLYANAG 566 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g 566 (566)
++++|...++++++..|++ +..+..++.+|...|
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 9999999999999999888 889999999998765
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=7e-16 Score=163.38 Aligned_cols=403 Identities=12% Similarity=0.101 Sum_probs=282.3
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHhccCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHH
Q 036165 112 LTQIATKLITFYTECQNIHHARMLFDEIPKT------NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185 (566)
Q Consensus 112 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 185 (566)
+|.--...++.|...|.+.+|.++++++.-. +...-+.++.+.++. +..+..+..++.... ...-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 3334445556666666666666666655421 123344455555554 444444444444311 12235
Q ss_pred HHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHH
Q 036165 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265 (566)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (566)
...+...|.+++|..+|++.. -.....+.++ -..|++++|.++.+++. +..+|..+..++.+.|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 556667788888888887752 1111222222 26678888888888763 4667888999999999999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036165 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345 (566)
Q Consensus 266 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 345 (566)
+.|.+. -|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+. +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 998663 467778889999999999999999998877764 34333445888899988887533332 2
Q ss_pred CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 036165 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425 (566)
Q Consensus 346 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 425 (566)
.++...+..+...|...|+++.|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFA 1259 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHH
Confidence 456667778889999999999999999885 36888999999999999999999887 456788888889
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc--CCH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRA--GRL 502 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g~~ 502 (566)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.... ..+ ....|.-|..+|.+. ++.
T Consensus 1260 cve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHH
Confidence 99999988888766542 34566777899999999999999999988874 333 345666666666654 466
Q ss_pred HHHHHHHHhcCC-C------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------hCCCCchHHHHHHHHHh
Q 036165 503 AEAYEMIKTMST-E------PDLFVWGALLGACKNHGNIELAEIAAKHLSE------------LEPESAANNMLLTDLYA 563 (566)
Q Consensus 503 ~~A~~~~~~~~~-~------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~ 563 (566)
.++.+.|..-.. + -+...|..+...|.+.|+++.|...+-.-.+ ..+.|+..|...++.|.
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH
Confidence 677777765442 2 2467799999999999999999844333222 25788898888888886
Q ss_pred hc
Q 036165 564 NA 565 (566)
Q Consensus 564 ~~ 565 (566)
..
T Consensus 1413 ~~ 1414 (1630)
T 1xi4_A 1413 EF 1414 (1630)
T ss_pred hh
Confidence 53
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.4e-18 Score=168.99 Aligned_cols=298 Identities=11% Similarity=0.032 Sum_probs=194.9
Q ss_pred HHhcCCHHHHHH-HHHhcCC---C----ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCC
Q 036165 224 YSKCGSVEKAKK-VFDEMVE---K----DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295 (566)
Q Consensus 224 ~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 295 (566)
+...|++++|.+ .|++... . +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444578888888 7776532 1 34567788888888888999988888888754 4466778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (566)
+++|...++++.+.. +.+..++..+..++...|++++|...++++.+... .+...+..+... .
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~-------~-------- 176 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEG-------A-------- 176 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHH-------h--------
Confidence 888888888887763 34677788888888888888888888888877541 111111110000 0
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH
Q 036165 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450 (566)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 450 (566)
+..........+...+ ..|++++|...|+++.+ | +..++..+...|...|++++|...|+++.+..+.+.
T Consensus 177 ----~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 177 ----GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ----hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 0000000111222223 66777777777776653 3 356677777777777888888888877777666667
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-C-----------
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-D----------- 517 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------- 517 (566)
.++..+..++...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++. ..| +
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 77777888888888888888888877764 23356677777888888888888888877765 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 518 LFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
..+|..+..+|...|+.++|..++++.++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 57788888888888888888887776554
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.2e-17 Score=152.90 Aligned_cols=231 Identities=10% Similarity=-0.017 Sum_probs=169.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHh
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG-DLHVRSALVDMYAK 397 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 397 (566)
..+.++|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+..+|.+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 3344555555555555554433 123444555555556666666666666666665554323 45666777788889
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH--HHHHHHHhccCChHHHHHHHHH
Q 036165 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF--TAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
.|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+..+.+.... ..++..+...|++++|..+|++
T Consensus 114 ~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 114 DQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp TTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999988 46677888888999999999999999999988643332221 2233444566899999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhhCCCCc
Q 036165 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIEL-AEIAAKHLSELEPESA 552 (566)
Q Consensus 476 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~ 552 (566)
+.+. .+.++..++.+..++.+.|++++|...++++. .+.++.++..++..+...|+.++ +.++++++++.+|+++
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9986 45678889999999999999999999999977 34478889999999999998865 6789999999999998
Q ss_pred hHHHH
Q 036165 553 ANNML 557 (566)
Q Consensus 553 ~~~~~ 557 (566)
.+...
T Consensus 270 ~~~d~ 274 (291)
T 3mkr_A 270 FIKEY 274 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=8.8e-18 Score=163.09 Aligned_cols=247 Identities=12% Similarity=-0.065 Sum_probs=173.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 036165 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395 (566)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (566)
..+..+...+.+.|++++|+..|+++++.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 335555555555566666666666555542 334455555555666666666666666665554432 455666666666
Q ss_pred HhcCCHHHHHHHHHhcCC--C-----------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHH
Q 036165 396 AKCGFISEARTLFDKMSE--R-----------NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTAC 460 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 460 (566)
.+.|++++|...|+++.+ | ....+..+...+...|++++|...++++.+..+. +..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 666677766666666553 1 1223445577888899999999999999888555 788999999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
...|++++|+..++++.+. .+.+..+|..++.+|.+.|++++|...++++. .+.+..+|..+..+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999875 34467889999999999999999999999887 3345888999999999999999999
Q ss_pred HHHHHHhhhCCC------------CchHHHHHHHHHhhcC
Q 036165 539 IAAKHLSELEPE------------SAANNMLLTDLYANAG 566 (566)
Q Consensus 539 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g 566 (566)
..+++++++.|+ +...+..|+.++...|
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 999999998877 3677888888877654
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.4e-17 Score=161.78 Aligned_cols=264 Identities=12% Similarity=-0.005 Sum_probs=153.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036165 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323 (566)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 323 (566)
+...|..+...+.+.|++++|...|+++.... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558888888888888888888888887653 3467778888888888888888888888887763 335778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQGFCPTS-----------ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
+|...|++++|...|+++.+.. |+. ..+..+...+...|++++|...++.+.+..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------- 210 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM--------- 210 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS---------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc---------
Confidence 8888888888888888887642 221 111223444455555555555555555443221
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.+..++..+...|...|++++|.+.|+++.+..+.+..++..+..++...|++++|+..
T Consensus 211 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 211 ---------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 02344444444455555555555555555444444445555555555555555555555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-------------CHHHHHHHHHHHHhcCCHHHHH
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-------------DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
++++.+. .+.+...+..+..+|.+.|++++|...++++. ..| +..+|..+..++...|+.+.+.
T Consensus 270 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 270 YTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 5555443 12224445555555555555555555555443 011 1345555556666666666555
Q ss_pred HHHHH
Q 036165 539 IAAKH 543 (566)
Q Consensus 539 ~~~~~ 543 (566)
...++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 55544
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.2e-16 Score=160.84 Aligned_cols=387 Identities=10% Similarity=-0.061 Sum_probs=225.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHC-----C---CCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcC-----
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-----G---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS----- 209 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 209 (566)
....||.+...+...|++++|++.|++..+. + .+....+|..+..++...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557899999999999999999999887542 1 12234577888888888899999988888876531
Q ss_pred -CC-CchhHHHHHHHHHHh--cCCHHHHHHHHHhcCC--C-ChhhHHHHHHH---HHHcCChhHHHHHHHHhhhCCCCcc
Q 036165 210 -FG-TDAFVVSSLIDMYSK--CGSVEKAKKVFDEMVE--K-DIVAMNAMVSG---YVQRGLATEALNLVEEIGTPRVKPN 279 (566)
Q Consensus 210 -~~-~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~ 279 (566)
.. ....++..+..++.. .+++++|.+.|++..+ | +...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 123455555544444 3468888888887732 3 44455544444 344577778888887776543 234
Q ss_pred HHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 036165 280 VVTWNTLISGFSK----SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355 (566)
Q Consensus 280 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 355 (566)
...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4455545444433 456677888887776652 3456677778888888888888888888877653 333444555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh
Q 036165 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYC 432 (566)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 432 (566)
+..++...+....+. ............+..++|...+++..+ .+...+..+...|...|++
T Consensus 287 lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 444443211110000 000011111112345677777776553 4566788899999999999
Q ss_pred HHHHHHHHHhhhcCCCCHH---HHHHHHH-HHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036165 433 DEAIELFNQMEERKKLDHL---SFTAVLT-ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~---~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 508 (566)
++|+..|++..+..+++.. .+..+.. .....|++++|+..+++..+. .|+....... .+.+.++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHH
Confidence 9999999998876333322 2333333 345789999999999998853 5554332222 2334445
Q ss_pred HHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 509 IKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 509 ~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
+++.. .+.+..+|..+..+|...|++++|++.|+++++.+|.+|.+..-+|+
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 55443 34567899999999999999999999999999999999988776653
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.4e-18 Score=165.34 Aligned_cols=304 Identities=14% Similarity=0.148 Sum_probs=112.3
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 036165 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 226 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 305 (566)
+.|++++|.++++++..+ .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445566666666666333 2566666666666666666666643 23555666666666666666666665555
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH
Q 036165 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385 (566)
Q Consensus 306 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 385 (566)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..+...|...|.++.|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 5443 3345556666666666666666665553 245556666666666666666666666644
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL 465 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (566)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGY 222 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHHHHHHHCCC
Confidence 24666777777777777777777766 366677777777777777777744333321 233334456666777777
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHhcCCHHH
Q 036165 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA--GRLAEAYEMIKTMSTEP-------DLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~ 536 (566)
+++|..+++..... . +-....|+-|.-+|.+- |+..+.++.|..-..-| +...|..+...|...++++.
T Consensus 223 ~eEai~lLe~aL~l-e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTS-T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 77777777766632 1 22344555555555543 34555555554333111 34556677777777777776
Q ss_pred HHHHHHHHhhh------------CCCCchHHHHHHHHHh
Q 036165 537 AEIAAKHLSEL------------EPESAANNMLLTDLYA 563 (566)
Q Consensus 537 A~~~~~~~~~~------------~p~~~~~~~~l~~~~~ 563 (566)
|...+-.-... ++.|...|....+.|.
T Consensus 301 A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 66654433322 4556666666666654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=6.7e-17 Score=154.06 Aligned_cols=243 Identities=11% Similarity=-0.077 Sum_probs=167.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 399 (566)
.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...|...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcC
Confidence 33344444444444444444444332 223333444444444444444444444444443221 3444445555555555
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHH-------------H-HH-HHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 400 FISEARTLFDKMSE--R-NTVTWNS-------------M-IF-GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 400 ~~~~A~~~~~~~~~--~-~~~~~~~-------------l-~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
++++|...++++.+ | +...+.. + .. .+...|++++|.+.++++.+..+.+...+..+...+.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55555555554432 1 1111211 1 22 3667889999999999999887778899999999999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
..|++++|.+.++++.+. .+.+...+..++.+|.+.|++++|...++++. .+.+..+|..+...+.+.|++++|..
T Consensus 184 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999875 24467889999999999999999999999987 34568889999999999999999999
Q ss_pred HHHHHhhhCCC------------CchHHHHHHHHHhhcC
Q 036165 540 AAKHLSELEPE------------SAANNMLLTDLYANAG 566 (566)
Q Consensus 540 ~~~~~~~~~p~------------~~~~~~~l~~~~~~~g 566 (566)
.++++++..|+ ++..+..++.+|...|
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999999 7899999999998876
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.9e-16 Score=150.95 Aligned_cols=265 Identities=10% Similarity=-0.012 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 326 (566)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555566666666666666655432 2244555556666666666666666666665542 234555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCchHHHHHHHHHHHHhCCCCcHhHHHHH
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSI--------------LP-ACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 391 (566)
..|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++.+.+...
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------- 169 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP---------- 169 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST----------
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC----------
Confidence 6666666666666666542 1111111111 11 13344444444444444444332
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
.+...+..+...+...|++++|.+.++++.+..+.+..++..+..++...|++++|..
T Consensus 170 ----------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 170 ----------------------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 2334445555555555555555555555555444455555556666666666666666
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-------------CHHHHHHHHHHHHhcCCHHHH
Q 036165 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-------------DLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~~~~~~~l~~~~~~~g~~~~A 537 (566)
.++++.+. .+.+...+..+..+|.+.|++++|.+.++++. ..| +..+|..+..++.+.|++++|
T Consensus 228 ~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 228 AYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 66665543 12234555556666666666666666665554 112 245566666666666666666
Q ss_pred HHHHHHHhhhC
Q 036165 538 EIAAKHLSELE 548 (566)
Q Consensus 538 ~~~~~~~~~~~ 548 (566)
...++++++..
T Consensus 306 ~~~~~~~l~~~ 316 (327)
T 3cv0_A 306 ELTYAQNVEPF 316 (327)
T ss_dssp HHHTTCCSHHH
T ss_pred HHHHHHHHHhc
Confidence 66666555443
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=4e-15 Score=149.77 Aligned_cols=259 Identities=10% Similarity=-0.043 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCchH
Q 036165 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISG---LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA----SAANMR 367 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~ 367 (566)
++++|.+.|++..+.. +-++..+..+..+ +...++.++|++.+++.++.. +.+...+..+...+. ..++.+
T Consensus 153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHH
Confidence 4555555555554431 1122233222222 223344455555555554432 222233333322222 223444
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHh----------------
Q 036165 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCAN---------------- 428 (566)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~---------------- 428 (566)
+|...++...+..+. +..++..+...|.+.|++++|...+++..+ | +..++..+..+|..
T Consensus 231 ~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~ 309 (472)
T 4g1t_A 231 EGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309 (472)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CH
T ss_pred HHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 555555555544322 344455555555555555555555555442 2 23334333333321
Q ss_pred ---cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh--hHHHHHHH-HHHhcCCH
Q 036165 429 ---HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT--EHYACMVD-LLGRAGRL 502 (566)
Q Consensus 429 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~ 502 (566)
.+..+.|...+++..+..+.+..++..+...+...|++++|+..|+++.+. ...+.. ..+..+.. .+...|++
T Consensus 310 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCH
Confidence 234577888888888877777888999999999999999999999999865 322221 12333333 24577999
Q ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 503 AEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 503 ~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++|...+++.. ..|+...+.. ..+.+..++++.++.+|+++.++..||.+|..+|
T Consensus 389 ~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 389 DKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999876 4565433222 2345677888889999999999999999998765
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.4e-15 Score=140.17 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 036165 224 YSKCGSVEKAKKVFDEMVEKDI----VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299 (566)
Q Consensus 224 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 299 (566)
....|++..|+..++.....++ .....+.++|...|++++|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4445666666666665544332 2233455666666666666654433 1244555666666666666666666
Q ss_pred HHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 036165 300 SKLFQLMRAKGVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
.+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|...++.+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666554333 344445555666666666666666654 23444444455555555555555555555544
Q ss_pred hCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHH
Q 036165 379 MGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457 (566)
Q Consensus 379 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 457 (566)
..+.... ......+..+. ..|++++|..+|+++.+..+.+...++.+.
T Consensus 159 ~~p~~~~~~l~~a~~~l~~-------------------------------~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAA-------------------------------GGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHH-------------------------------CTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHHHHh-------------------------------CchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4321100 00011122222 234455555555555544444444555555
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhcC
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE-AYEMIKTMS 513 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 513 (566)
.++.+.|++++|+..++++.+. .+-++.++..++.++...|+.++ +.++++++.
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555555555555554443 12234444455555555555443 334444443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.8e-16 Score=144.14 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=170.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036165 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360 (566)
Q Consensus 281 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 360 (566)
..+..+...+...|++++|...++++.+.. .+...|..+..++...|++++|+..+++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------- 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVE----------------- 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------
Confidence 344455555555555555555555555544 4455555555555555555555555555443
Q ss_pred HccCchHHHHHHHHHHHHhCCC--Cc----HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCh
Q 036165 361 ASAANMRRGKEIHGCAIVMGVE--GD----LHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYC 432 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 432 (566)
.... ++ ...+..+...|.+.|++++|...|++..+ |+. ..+...|++
T Consensus 67 ------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~ 121 (258)
T 3uq3_A 67 ------------------QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNA 121 (258)
T ss_dssp ------------------HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHH
T ss_pred ------------------hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHH
Confidence 2211 01 45666677777777777777777776654 332 345566778
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
++|...++++....+.+...+..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++
T Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888888766666778888999999999999999999999875 2446788889999999999999999999988
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC------CCCchHHHHHHHHH
Q 036165 513 S--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE------PESAANNMLLTDLY 562 (566)
Q Consensus 513 ~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 562 (566)
. .+.+..+|..+..++.+.|++++|...++++++.. |++......|..++
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 7 34568889999999999999999999999999988 99988888887653
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=1.8e-15 Score=140.07 Aligned_cols=248 Identities=11% Similarity=-0.062 Sum_probs=141.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 036165 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT--SATISSILPA 359 (566)
Q Consensus 282 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~ 359 (566)
.+......+...|++++|...++++.+.. +.+...+..+..++...|++++|+..+++..+.+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455666677777777777777776652 22444666677777777777777777777766321111 1224455555
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036165 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439 (566)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 439 (566)
+...|++++|...++.+.+..+. +.. .|..+...|...|++++|...|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLD-------------------------------MYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTH-------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHH-------------------------------HHHHHHHHHHHccCHHHHHHHH
Confidence 55555555555555555554322 333 4444444445555555555555
Q ss_pred HHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhcC---
Q 036165 440 NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR---LAEAYEMIKTMS--- 513 (566)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--- 513 (566)
++..+..+.+...+..+...+...+++++|.+.++++.+. .+.+...+..+..++...|+ +++|...++++.
T Consensus 132 ~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 132 EKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 5444443344444444442222333555555555555543 12223444445555555554 444555554443
Q ss_pred -CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 514 -TEPD------LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 514 -~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..|+ ..+|..+...|...|++++|...++++++.+|+++.+...++.+...
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 1122 24677788889999999999999999999999999999988877643
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=169.55 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhh---CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGT---PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 323 (566)
+||++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 555555555555555555555554432 34555555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036165 324 GLVHNFCN-DEAFDTFKEMLSQGFCPTSATISSILP 358 (566)
Q Consensus 324 ~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~ 358 (566)
++++.|+. ++|.++|++|.+.|+.||..+|+.++.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55555553 455555555555555555555555543
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=4.9e-15 Score=131.83 Aligned_cols=180 Identities=13% Similarity=0.012 Sum_probs=101.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
+...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+..|.+...+..+..++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 334445555555555566666555555443 23445555555555566666666666665555555555555555555
Q ss_pred hcc-----------CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 461 CHV-----------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 461 ~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
... |++++|+..++++.+. .+-+...+..+..+|...|++++|...++++. . .++..+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 555 6666666666666543 12234555555666666666666666665554 3 455556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+...|++++|+..++++++.+|+++..+..++.+|...|
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 666666666666666666666666666666666655443
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=1e-14 Score=140.49 Aligned_cols=245 Identities=8% Similarity=0.049 Sum_probs=190.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc-hHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 036165 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN-MRRGKEIHGCAIVMGVEGDLHVRSALVDM 394 (566)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (566)
..|..+..++...|++++|+..+++.++.. +-+...+..+..++...|+ +++|...++++++..+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345555666666677777777777766543 3345556666666777775 77777777777776544 67778888888
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-cCChHHH-
Q 036165 395 YAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH-VGLVELG- 469 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a- 469 (566)
+.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++..+.+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 8888899999888888774 5677888899999999999999999999998888888999999999988 5665777
Q ss_pred ----HHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcC--------C-
Q 036165 470 ----QRLFNMMQEKYKIMPRTEHYACMVDLLGRAG--RLAEAYEMIKTMSTE-PDLFVWGALLGACKNHG--------N- 533 (566)
Q Consensus 470 ----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g--------~- 533 (566)
+..+++++.. -+-+...|..+..+|.+.| ++++|.+.++++... .+...+..++.+|.+.| +
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4788888865 2335678888889898888 689999999887433 45677888888888764 2
Q ss_pred HHHHHHHHHHH-hhhCCCCchHHHHHHHHHhh
Q 036165 534 IELAEIAAKHL-SELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 534 ~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 564 (566)
.++|+.+++++ .+++|....+|..++..+..
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 58999999999 89999999999999988764
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=3e-15 Score=135.98 Aligned_cols=204 Identities=13% Similarity=0.019 Sum_probs=148.6
Q ss_pred HHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHH
Q 036165 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEA 435 (566)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 435 (566)
.+...|++++|...++.+.+... .+...+..+...|.+.|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ----------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHH
Confidence 33334444444444444333222 1345555666666666677777666665543 3556777778888888888899
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 036165 436 IELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-- 513 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 513 (566)
.+.++++.+..+.+...+..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888877778888888999999999999999999998875 24467788889999999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.+.+..+|..+..+|...|++++|...++++++.+|+++..+..++.+....
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 3456788999999999999999999999999999999999998887766543
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=5.8e-14 Score=139.64 Aligned_cols=249 Identities=10% Similarity=0.058 Sum_probs=145.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh---HHHHHHhccCCCCCcchHHHHHHHHHhcC-
Q 036165 83 ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI---HHARMLFDEIPKTNIHRWIALTGAYARRG- 158 (566)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g- 158 (566)
.+...+.+.|+++.|.++++.+.+.|. +..+..|-.+|...|+. ++|...|++..+.+...+..+...+...|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 345666778999999999999988873 33344455666667777 89999998887777777888887666655
Q ss_pred ----ChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh---hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---
Q 036165 159 ----YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI---GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG--- 228 (566)
Q Consensus 159 ----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--- 228 (566)
++++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+......| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 778999999999887643 2555555555544432 34555555555554 3445556777777776
Q ss_pred -CHHHHHHHHHhcCCCChhhHHHHHHHHHHcC---ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcC----CCHHHHH
Q 036165 229 -SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG---LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS----GDQVMVS 300 (566)
Q Consensus 229 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~ 300 (566)
+.+.+..+++.....++..+..|...|...| +.++|+..|++..+.| .++...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 3445555566666666677888888888888 7888888888877766 34444444555555544 5777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHHCC
Q 036165 301 KLFQLMRAKGVEPDVVSWTSVISG-L--VHNFCNDEAFDTFKEMLSQG 345 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~ 345 (566)
..|+... . -++..+..+... + ...+++++|+..|++..+.|
T Consensus 238 ~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 238 ALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 7777766 2 244555555554 2 34566667777766666554
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=5e-14 Score=128.67 Aligned_cols=173 Identities=13% Similarity=-0.004 Sum_probs=133.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhh--cCCCCHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEE--RKKLDHLSFTAVLT 458 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 458 (566)
+...+..+...|...|++++|...++++.+ .+...+..+...|...|++++|.+.++++.+ ..+.+...+..+..
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 344555556666666666666666665542 3455667777777778888888888888776 34445667888888
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHH
Q 036165 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 459 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 536 (566)
++...|++++|...++++.+. . +.+...+..++.+|.+.|++++|...++++. .+.+...+..+...+...|+.++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 888999999999999988875 2 3457788889999999999999999999876 23567778888899999999999
Q ss_pred HHHHHHHHhhhCCCCchHHHHH
Q 036165 537 AEIAAKHLSELEPESAANNMLL 558 (566)
Q Consensus 537 A~~~~~~~~~~~p~~~~~~~~l 558 (566)
|...++++++..|+++.....+
T Consensus 228 A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 228 AASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999998876654
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=161.24 Aligned_cols=129 Identities=8% Similarity=0.018 Sum_probs=116.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 036165 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMR---AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353 (566)
Q Consensus 277 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 353 (566)
..-..||+++|++|++.|++++|.++|++|. ..|+.||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4456799999999999999999999998875 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCch-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 354 SSILPACASAANM-RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 354 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH
Confidence 9999999999985 789999999999999999999999988776654333333
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.2e-14 Score=130.31 Aligned_cols=224 Identities=11% Similarity=0.004 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCC----hhhH
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--EPD----VVSW 318 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 318 (566)
...|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|.+.++.+.+... .++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4568889999999999999999999998876 7788899999999999999999999999876421 112 5778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (566)
..+..++...|++++|...|++..+. .|+. ..+...|++++|...++.+.+..+. +..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~------------ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAE------------ 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHH------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHH------------
Confidence 88888889999999999999888774 3442 2334445555555555555543211 233
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 399 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.+..+...+...|++++|...++++.+..+.+..++..+..++...|++++|...++++.+
T Consensus 141 -------------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 141 -------------------EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp -------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555554444555555555555555566666655555554
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 479 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
. .+.+...+..+..+|.+.|++++|...++++.
T Consensus 202 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 202 K--DPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 12234455555555556666666655555544
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=5.7e-14 Score=125.67 Aligned_cols=205 Identities=12% Similarity=0.009 Sum_probs=154.4
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 036165 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCAN 428 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 428 (566)
.+..+...+...|++++|...++.+.+.... +...+..+...|...|++++|...+++..+ .+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3444444555555555555555555544322 455666677777777777777777776553 355677778888888
Q ss_pred c-CChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 429 H-GYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 429 ~-~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
. |++++|...++++.+. .+.+...+..+..++...|++++|...++++.+. .+.+...+..++.+|.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 8888998888888873 3334677888889999999999999999998875 234577888999999999999999
Q ss_pred HHHHHhcC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 506 YEMIKTMS--TE-PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 506 ~~~~~~~~--~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
...++++. .+ .+...+..+...+...|+.++|...++.+.+..|+++.+...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 99999876 23 56777877778889999999999999999999999998877664
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=1.2e-14 Score=129.30 Aligned_cols=208 Identities=14% Similarity=0.026 Sum_probs=117.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
++...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|...++++++..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 345556666666666666666666666665542 233444445555555555555555555555544322 333444444
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.+|.+.+. . ... .+...|++++|+..|++..+..|.+...+..+..++...|++++|+..
T Consensus 81 ~~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 81 EAYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 44433300 0 000 001117777777777777776666777777777777788888888888
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
|+++.+. . .++..+..+..+|...|++++|...++++. .+.+...+..+...+...|++++|+..++++.
T Consensus 141 ~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 141 LKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8877776 4 566777777777888888888887777766 23456677777777777788888877777654
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=2.4e-13 Score=125.69 Aligned_cols=246 Identities=9% Similarity=-0.028 Sum_probs=167.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHH
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVI 322 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li 322 (566)
...+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+.+.+..++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456667788999999999999999998754 23455788889999999999999999999988432222 23488999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 036165 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402 (566)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 402 (566)
.++...|++++|+..|++..+.. +.+...+..+...+ ...|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~-----------------------------------~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF-----------------------------------YNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH-----------------------------------HHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH-----------------------------------HHccCHH
Confidence 99999999999999999998853 33344554444444 4455555
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHh
Q 036165 403 EARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL---VELGQRLFNMM 476 (566)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 476 (566)
+|...|++..+ .+...|..+...+...+++++|.+.|+++.+..+.+...+..+..++...|+ +++|...++++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 55555555543 2344455555233334477777777777777666666777777777777776 77777777777
Q ss_pred HHhcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 036165 477 QEKYKIMPRT------EHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGA 527 (566)
Q Consensus 477 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 527 (566)
.+...-.|+. ..|..+...|.+.|++++|.+.++++. ..| +...+..+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 6542222332 466677777888888888888887776 233 45445444433
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=7.9e-12 Score=128.48 Aligned_cols=437 Identities=10% Similarity=0.028 Sum_probs=290.4
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCC---hHHHHHHH
Q 036165 94 LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGY---HQEAVTVF 167 (566)
Q Consensus 94 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~ 167 (566)
..+....++..++... .|...|..++..+.+.+.++.++.+|+++.. | ....|...+..-.+.|+ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3444555666666653 6888999999999999999999999988765 3 45578888888888888 99999999
Q ss_pred HHhHHCC-CCCCcchHHHHHHHHcccCCh--------hHHHHHHHHHHH-cCC-CC-chhHHHHHHHHHHh---------
Q 036165 168 HEMHIQG-LKQNIFVIPSVLKACGHLSDI--------GTGEKIHSLVLK-HSF-GT-DAFVVSSLIDMYSK--------- 226 (566)
Q Consensus 168 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~~--------- 226 (566)
++..... ..|++..|..-+....+.++. +...++|+..+. .|. .+ +..+|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988763 137777777776655554443 334567777654 355 44 34677777765442
Q ss_pred cCCHHHHHHHHHhcCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHH
Q 036165 227 CGSVEKAKKVFDEMVEKD----IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302 (566)
Q Consensus 227 ~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 302 (566)
.++++.+..+|+....-. ..+|......--..+. ..+..++.+. ..+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHH
Confidence 335677777887775421 1223222111111011 1111111110 0122333444
Q ss_pred HHHHHH--cCCC---------------C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCH
Q 036165 303 FQLMRA--KGVE---------------P--D------VVSWTSVISGLVHNF-------CNDEAFDTFKEMLSQGFCPTS 350 (566)
Q Consensus 303 ~~~~~~--~~~~---------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~ 350 (566)
+.++.. .++. | + ...|...+.---..+ ..+.+..+|++.+.. ++-+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 433221 0110 1 0 123444443322222 123456778888765 35567
Q ss_pred HHHHHHHHHHHccCchHHHH-HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC-
Q 036165 351 ATISSILPACASAANMRRGK-EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-------------RN- 415 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~- 415 (566)
..+...+.-+...|+.+.|. .+++...... +.+...+..++....+.|+++.|..+|+++.+ |+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 77777777778888888896 9999998754 34677778888888999999999999987764 21
Q ss_pred -----------hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhcc-CChHHHHHHHHHhHHhcCC
Q 036165 416 -----------TVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV-GLVELGQRLFNMMQEKYKI 482 (566)
Q Consensus 416 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~ 482 (566)
...|...+....+.|+.+.|..+|.+..+. .......|...+..-.+. ++++.|.++|+...+. +
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~ 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--F 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--H
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--C
Confidence 235777788878889999999999999886 333445555444333344 4599999999999987 3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-EP----DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
+-+...|...++.....|+.+.|..+|+++.. .| ....|...+..-.+.|+.+.+..+.+++.+..|+++..-..
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 44666788889989999999999999999883 24 35678888888899999999999999999999998765443
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.7e-13 Score=126.84 Aligned_cols=229 Identities=10% Similarity=-0.042 Sum_probs=164.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCcHhHHHH
Q 036165 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS----AANMRRGKEIHGCAIVMGVEGDLHVRSA 390 (566)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (566)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 334444555555555666666666555552 233444455555555 666666666666665554 4556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 391 LVDMYAK----CGFISEARTLFDKMSE-RNTVTWNSMIFGCAN----HGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 391 l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
+..+|.. .+++++|+..|++..+ .+...+..+...|.. .+++++|...|++..+.. +...+..+...+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 6777777 7777777777776654 456677777777777 888888888888887753 5667777788887
Q ss_pred c----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 036165 462 H----VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRLAEAYEMIKTMSTEPDLFVWGALLGACKN--- 530 (566)
Q Consensus 462 ~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~--- 530 (566)
. .+++++|...+++..+. + +...+..+..+|.. .+++++|...+++.....+...+..+...|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 7 88999999999998875 3 45678888888988 99999999999988744557788888888988
Q ss_pred -cCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 531 -HGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 531 -~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
.+++++|...++++.+.+|++....
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999999998765544
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=8.9e-14 Score=138.29 Aligned_cols=377 Identities=8% Similarity=-0.015 Sum_probs=234.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh---hHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 036165 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI---GTGEKIHSLVLKHSFGTDAFVVSSLIDMYS 225 (566)
Q Consensus 149 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 225 (566)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|.+.+++..+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788899999999999988765 334444555556667777 8899998888754 4555566666555
Q ss_pred hcC-----CHHHHHHHHHhcCCC-ChhhHHHHHHHHHHcCChhH---HHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCH
Q 036165 226 KCG-----SVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATE---ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296 (566)
Q Consensus 226 ~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 296 (566)
..| ++++|...|++..++ +...+..|...|...+..++ +.+.+......|. ......+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 555 778888888887544 45577788888877665433 4444544444432 33455566666666655
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CchHHH
Q 036165 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF---CNDEAFDTFKEMLSQGFCPTSATISSILPACASA----ANMRRG 369 (566)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a 369 (566)
+.+........+.-...++..+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 444444333333222334557888888888888 8888999998888877 55555555666666544 688888
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHH-H--HhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcC-----ChHHHHHHHH
Q 036165 370 KEIHGCAIVMGVEGDLHVRSALVDM-Y--AKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHG-----YCDEAIELFN 440 (566)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~-----~~~~A~~~~~ 440 (566)
...++... .| ++..+..+..+ | ...+++++|...|++..+ .+...+..|...|. .| ++++|.++|+
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 88888877 33 45566666666 3 457888999888887765 45667777777776 44 8888888888
Q ss_pred HhhhcCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhc
Q 036165 441 QMEERKKLDHLSFTAVLTACCH----VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRLAEAYEMIKTM 512 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 512 (566)
+.. +.+...+..|...|.. ..++++|...|++..+. | ++.....|..+|.. ..++++|..++++.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 877 5566777777777765 34888888888888765 4 34456666776664 45788888888887
Q ss_pred CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhhC
Q 036165 513 STEPDLFVWGALLGAC--KNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 513 ~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 548 (566)
....+......+-... ...++.++|..+.++-.+..
T Consensus 385 ~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 385 KAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 7554444433333332 23345666777776665543
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.2e-14 Score=143.08 Aligned_cols=290 Identities=12% Similarity=0.022 Sum_probs=164.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc-c--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCC-Chh
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-N--VVTWNTLISGFSKSGDQVMVSKLFQLMRAK----GVEP-DVV 316 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 316 (566)
...+......+...|++++|...|++..+.+... . ...+..+...+...|++++|...+++..+. +..| ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3445556666677777777777777766542111 1 245556666666777777777776665432 1111 134
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (566)
++..+...+...|++++|...+++..+... .++.. ....++..+...|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHHHHHH
Confidence 555566666666666666666666543210 00100 0122333444444
Q ss_pred HhcCC--------------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-
Q 036165 396 AKCGF--------------------ISEARTLFDKMSE-----R----NTVTWNSMIFGCANHGYCDEAIELFNQMEER- 445 (566)
Q Consensus 396 ~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 445 (566)
...|+ +++|...+++..+ + ...++..+...|...|++++|...+++..+.
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444 4444444443321 1 1234556666666777777777777766654
Q ss_pred -CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 036165 446 -KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST-- 514 (566)
Q Consensus 446 -~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 514 (566)
..++ ..++..+..++...|++++|...++++.+...-.++ ..++..+...|...|++++|...++++..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 1122 125666777777777777777777776543111111 34566777777777777777777776651
Q ss_pred --CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC------CCCchHHHHHHHHHhhc
Q 036165 515 --EPD----LFVWGALLGACKNHGNIELAEIAAKHLSELE------PESAANNMLLTDLYANA 565 (566)
Q Consensus 515 --~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~ 565 (566)
.++ ..++..+...|...|++++|...++++++.. |.....+..++.+|...
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 122 4456677777777888888888888777642 33355666677766554
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=1.7e-13 Score=126.76 Aligned_cols=222 Identities=11% Similarity=-0.045 Sum_probs=136.6
Q ss_pred CChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 329 FCNDEAFDTFKEMLSQGFC---PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 329 g~~~~A~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+..+. +...+..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555555443210 12233444455555555555555555555554332 4556666666667777777777
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 036165 406 TLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482 (566)
Q Consensus 406 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 482 (566)
..|++..+ .+...+..+...|...|++++|...|+++.+..+.+.. ....+..+...|++++|...+++.... .
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~--~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-RSLWLYLAEQKLDEKQAKEVLKQHFEK--S 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 77666553 34566777777777777777777777777765444432 333333445667888888888777664 2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-PD-----LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+++...+ .++..+...++.++|.+.++++... |+ ..+|..+...|.+.|++++|...++++++.+|++...+
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 3333333 3666667777777888887776622 21 46677777888888888888888888888888775543
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=5.2e-14 Score=130.32 Aligned_cols=240 Identities=9% Similarity=-0.101 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH
Q 036165 294 GDQVMVSKLFQLMRAKGVE---PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370 (566)
Q Consensus 294 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 370 (566)
|++++|...++++.+.... .+...+..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4444444444444443110 123344444455555555555555555554432 223444555555555555555555
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC
Q 036165 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448 (566)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 448 (566)
..++.+++..+. +...+..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|...+++.....++
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 555555554322 345566666666666666666666666553 43333333444445567777777777777666555
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWG 522 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~ 522 (566)
+...+. ++..+...++.++|...++.+... .|+ ...+..++.+|.+.|++++|...++++. ..|+. +.
T Consensus 177 ~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 250 (275)
T 1xnf_A 177 EQWGWN-IVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FV 250 (275)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CH
T ss_pred chHHHH-HHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HH
Confidence 555444 555666677777777777766532 221 4667777788888888888888888776 33422 33
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 036165 523 ALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~ 541 (566)
....++...|++++|+..+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 3355666777777777665
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.9e-13 Score=118.19 Aligned_cols=168 Identities=13% Similarity=0.019 Sum_probs=147.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
+..+|..+...|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|...+++.....+.+...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 567788889999999999999999988764 45678888999999999999999999999888888888899999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
...++++.+...+.++... .+.+...+..+..+|.+.|++++|.+.|+++. .+.+..+|..+..+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999875 34467788899999999999999999999887 3457888999999999999999999
Q ss_pred HHHHHHhhhCCCCch
Q 036165 539 IAAKHLSELEPESAA 553 (566)
Q Consensus 539 ~~~~~~~~~~p~~~~ 553 (566)
..++++++.+|+++.
T Consensus 162 ~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 162 KYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHTTHHHHH
T ss_pred HHHHHHHhCCccCHH
Confidence 999999999998754
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=7.4e-14 Score=137.70 Aligned_cols=271 Identities=12% Similarity=-0.013 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC-CCChhh
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV----VTWNTLISGFSKSGDQVMVSKLFQLMRAK----GV-EPDVVS 317 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 317 (566)
.+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...+++..+. +. ......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445556666777777777777776654211 22 35566666666677777777776665432 11 112345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYA 396 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 396 (566)
+..+...|...|++++|...+++..+... +.+. .....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 55566666666666666666666543200 0000 011233444455555
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CC
Q 036165 397 KCGF-----------------ISEARTLFDKMSE-----R----NTVTWNSMIFGCANHGYCDEAIELFNQMEERK--KL 448 (566)
Q Consensus 397 ~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 448 (566)
..|+ +++|...+++..+ . ....+..+...|...|++++|...+++..+.. .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555444321 1 12356666677777777777777777776651 12
Q ss_pred C----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC
Q 036165 449 D----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP----RTEHYACMVDLLGRAGRLAEAYEMIKTMST----EP 516 (566)
Q Consensus 449 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p 516 (566)
+ ..++..+..++...|++++|...++++.+...-.. ...++..+..+|...|++++|...++++.. .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 12677777788888888888888877765411111 145667788888888888888888887651 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 517 D----LFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 517 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
+ ..++..+...|...|++++|...+++++++.+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 2 34677777888888888888888888887654
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.9e-13 Score=131.59 Aligned_cols=211 Identities=10% Similarity=0.066 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhHHHHHHHHH
Q 036165 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF-ISEARTLFDKMSE---RNTVTWNSMIFGC 426 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 426 (566)
..+..+...+...|++++|...++++++..+. +...++.+..++.+.|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45677778888999999999999999998755 78889999999999997 9999999998875 4678999999999
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHH
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR-AGRLAEA 505 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A 505 (566)
...|++++|+..|+++.+..+.+...|..+..++...|++++|+..++++++. -+-+...|+.+..+|.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999988889999999999999999999999999999986 23467889999999999 6665777
Q ss_pred -----HHHHHhcC--CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 506 -----YEMIKTMS--TEPDLFVWGALLGACKNHG--NIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 506 -----~~~~~~~~--~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
++.++++. .+.+...|..+...+...| ++++|...++++ +.+|+++.++..|+.+|.++
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 47788776 3346788999999998888 689999999998 99999999999999999864
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.2e-12 Score=119.39 Aligned_cols=195 Identities=7% Similarity=-0.030 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 036165 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394 (566)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (566)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4456666677777777777777777777653 345666777777777788888888888777776543 56677788888
Q ss_pred HHhcCCHHHHHHHHHhcCC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHH
Q 036165 395 YAKCGFISEARTLFDKMSE----R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 469 (566)
|...|++++|...++++.+ | +...+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888887765 2 3456777788888889999999999888887777788888888888999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...++++.+. .+.+...+..+...+.+.|++++|.+.++++.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 195 RQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999888763 34456777888888888999999998888876
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=2.6e-13 Score=122.99 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 34444444445555555555555554432 223444444455555555555555555555544322 4455555666666
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 397 KCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
..|++++|...++++.+ .+...+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666665442 344556666666666777777777777766665556666677777777777777777777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+++.+. .+.+...+..+..+|.+.|++++|...++++.
T Consensus 183 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 183 AAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 776654 23345566667777777777777777777665
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=5.8e-13 Score=119.02 Aligned_cols=182 Identities=13% Similarity=-0.004 Sum_probs=161.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+..+.+..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 567788899999999999999999998764 45778899999999999999999999999988788889999999999
Q ss_pred hcc-CChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHH
Q 036165 461 CHV-GLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 461 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 536 (566)
... |++++|...++++.+. +..|+ ...+..++.++.+.|++++|...++++. .+.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 999 9999999999999873 33443 5778899999999999999999999887 33458889999999999999999
Q ss_pred HHHHHHHHhhhCC-CCchHHHHHHHHHhhcC
Q 036165 537 AEIAAKHLSELEP-ESAANNMLLTDLYANAG 566 (566)
Q Consensus 537 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g 566 (566)
|...++++++..| +++..+..++.++...|
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999 99999988888877654
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=8.9e-12 Score=115.17 Aligned_cols=221 Identities=8% Similarity=-0.045 Sum_probs=126.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK----SGDQVMVSKLFQLMRAKGVEPDVVSWTS 320 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 320 (566)
..++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344555555555556666666666655542 233444455555555 566666666666655543 4555555
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 321 VISGLVH----NFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS----AANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 321 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5566666 666666666666665543 44455555555555 566666666666555543 334445555
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-
Q 036165 393 DMYAK----CGFISEARTLFDKMSE-RNTVTWNSMIFGCAN----HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH- 462 (566)
Q Consensus 393 ~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 462 (566)
..|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.. +...+..+...+..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 55555 5666666666665443 344455556666666 666666666666665542 24455556666666
Q ss_pred ---cCChHHHHHHHHHhHHh
Q 036165 463 ---VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 463 ---~g~~~~a~~~~~~~~~~ 479 (566)
.+++++|.+.+++..+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHc
Confidence 66666666666666654
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=2.3e-12 Score=121.44 Aligned_cols=184 Identities=11% Similarity=0.081 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh-HHHHHHHHHHhcCChHHHHHHHHHh
Q 036165 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RN-TV-TWNSMIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 442 (566)
++|..++++.++.-.+.+...+..++..+.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56666666666521122455666677777777777777777776654 32 32 6777777777777777777777777
Q ss_pred hhcCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-
Q 036165 443 EERKKLDHLSFTAVLTACC-HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST----EP- 516 (566)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p- 516 (566)
.+..+.+...|...+.... ..|++++|.++|+++.+. .+-+...|..++..+.+.|++++|..+|+++.. .|
T Consensus 161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 7665555555554433322 257777777777777764 233556677777777777777777777777662 22
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 517 -DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 517 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
....|..++..+.+.|+.++|..+++++++..|+++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 355677777777777777777777777777777654
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.5e-13 Score=131.08 Aligned_cols=272 Identities=12% Similarity=0.015 Sum_probs=166.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCC-ChhhHH
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPN---VVTWNTLISGFSKSGDQVMVSKLFQLMRAK----GVEP-DVVSWT 319 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 319 (566)
+......+...|++++|...|+++.+...... ...+..+...+...|++++|.+.+++..+. +..+ ....+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34445566667777777777777665421110 245556666666667777766666665432 1111 233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (566)
.+...+...|++++|...+++..+... .++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 555566666666666666665543210 01100 0122344445555555
Q ss_pred CC--------------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CC
Q 036165 399 GF--------------------ISEARTLFDKMSE-----R----NTVTWNSMIFGCANHGYCDEAIELFNQMEER--KK 447 (566)
Q Consensus 399 g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 447 (566)
|+ +++|...+++..+ + ....+..+...+...|++++|...+++..+. ..
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555544321 1 1235666777778888888888888877655 11
Q ss_pred CC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C
Q 036165 448 LD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST----E 515 (566)
Q Consensus 448 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 515 (566)
++ ..++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|...++++.. .
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 226778888888999999999988887654111112 45677888899999999999999887751 1
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 516 PD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 516 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
++ ..++..+...|.+.|++++|...+++++++.++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 22 446778889999999999999999999987764
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=3.1e-13 Score=132.83 Aligned_cols=293 Identities=11% Similarity=-0.041 Sum_probs=185.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhhHHHHHHHHHHcCChhHHHHHHHHhhh----CCCCcc
Q 036165 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-D----IVAMNAMVSGYVQRGLATEALNLVEEIGT----PRVKPN 279 (566)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~ 279 (566)
......+......+...|++++|...|++..+ + + ...|..+...+...|++++|...+++... .+-.|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556677788999999999999999998833 2 3 35688899999999999999999998754 222222
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------hhH
Q 036165 280 -VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPD----VVSWTSVISGLVHNFC--------------------NDE 333 (566)
Q Consensus 280 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~ 333 (566)
..++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 45778888999999999999999998765310 011 3467777788888888 777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMS 412 (566)
Q Consensus 334 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 412 (566)
|...+++..+.. .+.+.. ....++..+...|...|++++|...+++..
T Consensus 166 A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 166 AVDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777766654310 000000 012234444555555555555555555443
Q ss_pred C-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCC----HHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 413 E-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLD----HLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 413 ~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
+ ++ ..++..+...|...|++++|...+++..+.. .++ ..++..+...+...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2 11 2255556666666777777777766665541 111 3456666777777777777777777665
Q ss_pred HhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC----CHHHHHHHHHHHHhcCCH
Q 036165 478 EKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST----EP----DLFVWGALLGACKNHGNI 534 (566)
Q Consensus 478 ~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p----~~~~~~~l~~~~~~~g~~ 534 (566)
+...-..+ ..++..+..+|.+.|++++|...+++... .. ...++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 43111111 34566677777777777777777776541 11 134455566666666544
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=5.1e-13 Score=131.66 Aligned_cols=269 Identities=9% Similarity=-0.023 Sum_probs=181.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch----hhHHHHHHHHHHcCChhHHHHHHHHhhhC----CC-CccHH
Q 036165 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-DI----VAMNAMVSGYVQRGLATEALNLVEEIGTP----RV-KPNVV 281 (566)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~ 281 (566)
...+..+...+...|++++|...|++..+ + +. ..|..+...+...|++++|...+++..+. +- .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455678889999999999999999843 2 33 46888999999999999999999987642 21 22346
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----C-CCCChhhHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 036165 282 TWNTLISGFSKSGDQVMVSKLFQLMRAK----G-VEPDVVSWTSVISGLVHNFC-----------------NDEAFDTFK 339 (566)
Q Consensus 282 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 339 (566)
.+..+...+...|++++|...+++..+. + ......++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888899999999999999999987653 1 11124466677777777777 666666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 036165 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSE----- 413 (566)
Q Consensus 340 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 413 (566)
+..+.. . +.+. ......+..+...|...|++++|...+++..+
T Consensus 208 ~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 543210 0 0000 01223455566666666666666666665543
Q ss_pred CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 036165 414 RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483 (566)
Q Consensus 414 ~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 483 (566)
.+ ...+..+...|...|++++|...+++..+.. ..+ ..++..+..++...|++++|...++++.+...-.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 2256667777777788888877777776651 111 3467777778888888888888888776531111
Q ss_pred CC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 484 PR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 484 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+ ...+..+..+|.+.|++++|...++++.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 3466777888888888888888887765
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=1.9e-12 Score=126.23 Aligned_cols=228 Identities=9% Similarity=-0.029 Sum_probs=161.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC------CcHhHHH
Q 036165 321 VISGLVHNFCNDEAFDTFKEMLSQ----GFCP-TSATISSILPACASAANMRRGKEIHGCAIVMGVE------GDLHVRS 389 (566)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 389 (566)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+.+..+.-.. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455566666666666666542 1111 1234556666666666666666666666542111 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-----C-CCCHHHHH
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER-----K-KLDHLSFT 454 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~~ 454 (566)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|.+.+++..+. . +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888888888888877663 22 236778889999999999999999998873 2 33455788
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhc---CCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKY---KIMPRTEHYACMVDLLGRAGR---LAEAYEMIKTMSTEPD-LFVWGALLGA 527 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 527 (566)
.+..++...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999887541 111122335678889999999 8999999998864443 4467788899
Q ss_pred HHhcCCHHHHHHHHHHHhhhC
Q 036165 528 CKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~ 548 (566)
|...|++++|...++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999754
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=6e-12 Score=118.52 Aligned_cols=251 Identities=14% Similarity=0.032 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036165 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLV-------HNFCN-------DEAFDTFKEMLSQGFCPTSATISSILPACAS 362 (566)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 362 (566)
++|..+|+++.+. .+.++..|..++..+. ..|++ ++|..+|++.++.-.+-+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4566666666554 1335556666655554 34665 7777777777763112344466677777777
Q ss_pred cCchHHHHHHHHHHHHhCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH-hcCChHHHHH
Q 036165 363 AANMRRGKEIHGCAIVMGVEGDLH-VRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCA-NHGYCDEAIE 437 (566)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~-~~~~~~~A~~ 437 (566)
.|++++|..+|+.+++..+. +.. ++..++..+.+.|++++|..+|++..+ .+...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777764322 233 778888888888888888888888765 23334443333222 3699999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAEAYEMIKTMS-T 514 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 514 (566)
+|++..+..+.+...|..++..+.+.|++++|..+|+++.....++| ....|..++..+.+.|+.++|..+++++. .
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999888777888999999999999999999999999987522455 35688888999999999999999998876 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
.|+......+ ..+ .-..+++++.|+++..+..||.
T Consensus 271 ~p~~~~~~~~-~~~----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 271 FREEYEGKET-ALL----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp TTTTTSSCHH-HHH----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred cccccccchH-HHH----------HHHHHhcccCCCCHHHHHhcCC
Confidence 3432110000 011 1111556789999998887763
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=6.7e-13 Score=126.52 Aligned_cols=268 Identities=11% Similarity=-0.027 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhhHHHHHHHHHHcCChhHHHHHHHHhhhC----CCCc-cHHH
Q 036165 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-D----IVAMNAMVSGYVQRGLATEALNLVEEIGTP----RVKP-NVVT 282 (566)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~ 282 (566)
..+......+...|++++|...|++..+ + + ...+..+...+...|++++|...+++.... +..| ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455667888999999999999999832 2 3 356888999999999999999999987542 2222 2567
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------hhHHHHH
Q 036165 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPD----VVSWTSVISGLVHNFC--------------------NDEAFDT 337 (566)
Q Consensus 283 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 337 (566)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78888999999999999999998765311 112 3366777777888888 6666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 036165 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSE--- 413 (566)
Q Consensus 338 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 413 (566)
+++..+. .. ..+.. .....+..+...|...|++++|...+++..+
T Consensus 166 ~~~a~~~----------------------------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSL----------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHH----------------------------HH---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HH---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6655321 00 00000 1123455566666666676666666665542
Q ss_pred --CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 036165 414 --RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481 (566)
Q Consensus 414 --~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 481 (566)
++ ..++..+...+...|++++|...+++..+. ...+ ..++..+...+...|++++|...++++.+...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 11 225666777777888888888888877665 1122 34677778888888888888888887765311
Q ss_pred CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 482 IMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 482 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
-..+ ..++..+..+|.+.|++++|...++++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1111 3467778888888999999988888765
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=4.9e-10 Score=115.21 Aligned_cols=134 Identities=6% Similarity=-0.016 Sum_probs=100.2
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC---hHHHHHHhccCCC-----CCcc
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN---IHHARMLFDEIPK-----TNIH 145 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-----~~~~ 145 (566)
.|.+...|..+++.+...+.+..++.++++++..- +.....|...+..-.+.|+ ++.+..+|++... +++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 46788899999999999999999999999999874 5677889999999888888 9999999997754 5677
Q ss_pred hHHHHHHHHHhcCCh--------HHHHHHHHHhHH-CCC-CCCc-chHHHHHHHHc---------ccCChhHHHHHHHHH
Q 036165 146 RWIALTGAYARRGYH--------QEAVTVFHEMHI-QGL-KQNI-FVIPSVLKACG---------HLSDIGTGEKIHSLV 205 (566)
Q Consensus 146 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~ 205 (566)
.|...+....+.++. +...++|+.... .|. .|+. ..|...+.... ..++.+.+..+|+.+
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888888777666654 334477777654 365 5543 46666665432 234567889999998
Q ss_pred HHc
Q 036165 206 LKH 208 (566)
Q Consensus 206 ~~~ 208 (566)
+..
T Consensus 221 L~i 223 (679)
T 4e6h_A 221 LCQ 223 (679)
T ss_dssp TTS
T ss_pred HhC
Confidence 863
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=3.1e-12 Score=114.70 Aligned_cols=208 Identities=10% Similarity=0.002 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHH
Q 036165 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIF 424 (566)
Q Consensus 348 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 424 (566)
.|+..+......+...|++++|...++.+++....++...+..+..++.+.|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888899999999999999998887645666777788899999999999999987764 3 4567888888
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHH
Q 036165 425 GCANHGYCDEAIELFNQMEERKKLDH-------LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVD 494 (566)
Q Consensus 425 ~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 494 (566)
.|...|++++|...+++..+..+.+. ..|..+...+...|++++|++.++++.+ ..|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 89999999999999999888766666 5577888888889999999999998874 3554 466777777
Q ss_pred HHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 495 LLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
+|...|+. .++++. ...+...+.... ....+.+++|...++++++++|+++.....++.+....
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 77665543 233332 123344444333 34456789999999999999999999999999887654
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=5.5e-12 Score=108.85 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=137.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+...|..+...|...|++++|++.|++..+..|.+..++..+..++...|++++|...+..+... .+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56789999999999999999999999999988889999999999999999999999999999875 3445677888889
Q ss_pred HHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+...+++++|...+++.. .+.+...+..+...+.+.|++++|++.++++++.+|+++.++..+|.+|..+|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 9999999999999999877 44568889999999999999999999999999999999999999999999876
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=5.7e-12 Score=108.61 Aligned_cols=169 Identities=17% Similarity=0.043 Sum_probs=150.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+..+.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667788889999999999999999886 466788889999999999999999999999887778899999999999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
..|++++|.+.++++.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+..++..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999876 34567888999999999999999999999887 34567889999999999999999999
Q ss_pred HHHHHhhhCCCCchHH
Q 036165 540 AAKHLSELEPESAANN 555 (566)
Q Consensus 540 ~~~~~~~~~p~~~~~~ 555 (566)
.++++++..|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999887654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=1.6e-12 Score=130.14 Aligned_cols=209 Identities=11% Similarity=0.010 Sum_probs=131.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM-RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 330 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
..++++..+++.... .+.+...+..+...+...|++ ++|...++++++..+. +...+..+..+|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555666654433 234556666666777777777 7777777777666433 4566666677777777777777777
Q ss_pred HhcCC--CChhHHHHHHHHHHhc---------CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc--------CChHHH
Q 036165 409 DKMSE--RNTVTWNSMIFGCANH---------GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV--------GLVELG 469 (566)
Q Consensus 409 ~~~~~--~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a 469 (566)
++..+ |+...+..+...+... |++++|++.|++..+..+.+...|..+..++... |++++|
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 66554 5555666666666666 6666677776666666555666666666666666 666666
Q ss_pred HHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 470 QRLFNMMQEKYKIMP----RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
+..|+++.+. .| +...|..+..+|.+.|++++|.+.|+++. .+.+...+..+..++...|++++|.+.+.+
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666654 23 45566666666666666666666666655 223455566666666666666666655544
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=4.1e-12 Score=127.14 Aligned_cols=211 Identities=8% Similarity=-0.072 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN-DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (566)
++++...++..... .+.+...+..+..++...|++ ++|+..|++.++.. +.+...+..+..++...|++++|...++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666654443 233666777777778888888 88888888877653 3446677777788888888888888888
Q ss_pred HHHHhCCCCcHhHHHHHHHHHHhc---------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc--------CChHH
Q 036165 375 CAIVMGVEGDLHVRSALVDMYAKC---------GFISEARTLFDKMSE---RNTVTWNSMIFGCANH--------GYCDE 434 (566)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~--------~~~~~ 434 (566)
.+++.. |+...+..+..+|... |++++|+..|++..+ .+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 877764 3457777777777777 888888888877653 3566777777777777 77888
Q ss_pred HHHHHHHhhhcCC---CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 435 AIELFNQMEERKK---LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 435 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
|++.|++..+..+ .+...|..+..++...|++++|.+.|+++.+. .+.+...+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888877655 57777888888888888888888888887765 233455677777777888888888776665
Q ss_pred c
Q 036165 512 M 512 (566)
Q Consensus 512 ~ 512 (566)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 5
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=3.3e-13 Score=127.33 Aligned_cols=243 Identities=12% Similarity=0.073 Sum_probs=135.1
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 036165 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351 (566)
Q Consensus 279 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 351 (566)
+..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...+++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 3455666666777777777777777666542 122234455666666666666666666666655420
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhHH
Q 036165 352 TISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSE-----------RNTVTW 419 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~ 419 (566)
..... +. ......+..+...|...|++++|...+++..+ .....+
T Consensus 100 ----------------------~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 ----------------------EKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp ----------------------HHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ----------------------HHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00000 10 11233444455555555555555555544331 112345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhc--------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc------CCCCC
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEER--------KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY------KIMPR 485 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~ 485 (566)
..+...+...|++++|.+.++++.+. .+....++..+..++...|++++|...++++.+.. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 66666777777777777777776654 11123467777888888888888888888877531 01111
Q ss_pred -hhHH------HHHHHHHHhcCCHHHHHHHHHhcCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 486 -TEHY------ACMVDLLGRAGRLAEAYEMIKTMST-E-PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 486 -~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
...+ ..+...+...+.+.+|...+++... . .+..++..+..+|.+.|++++|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122 2223334445555666666666652 2 34567888999999999999999999999998775
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=3.2e-11 Score=117.50 Aligned_cols=158 Identities=10% Similarity=-0.028 Sum_probs=83.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCChhHHHHHHHHhhhC----CC-C-ccHHHHH
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMVE-----KD----IVAMNAMVSGYVQRGLATEALNLVEEIGTP----RV-K-PNVVTWN 284 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~-p~~~~~~ 284 (566)
....+...|++++|...|++... ++ ..++..+...+...|++++|+..+++..+. +- . ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44555666777777777766632 11 235666666666677777766666665431 10 1 1123555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHH
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKGVE-P----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ----GF-CPTSATIS 354 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~ 354 (566)
.+...|...|++++|.+.+++..+.... + ...++..+..+|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5666666666666666666665432100 1 1124555556666666666666666655541 11 22233444
Q ss_pred HHHHHHHccCchHHHHHHHHHHH
Q 036165 355 SILPACASAANMRRGKEIHGCAI 377 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~ 377 (566)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555554443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=9.2e-11 Score=113.96 Aligned_cols=162 Identities=9% Similarity=0.067 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhh-----cCCCCHH
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEE-----RKKLDHL 451 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~ 451 (566)
.+++.+..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+ ..+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 4455666666677777777666665543 11 23567778888888888888888888877 3333466
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCC-HHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVDLLGRAGR---LAEAYEMIKTMSTEPD-LFVWGAL 524 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l 524 (566)
++..+..++.+.|++++|...+++..+...-..+ ...+..+...|...|+ +++|...+++....|+ ...+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7888899999999999999999998875222122 2345666777778888 8889999988653333 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhh
Q 036165 525 LGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
...|...|++++|...++++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88899999999999999999864
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=4.2e-12 Score=119.65 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVE--------K---DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
..++..+...+...|++++|...|+++.+ . ...++..+...+...|++++|...+++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555666666666666666555422 1 12234445555555555555555555443
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=2.5e-11 Score=126.34 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=143.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
+...++.+..+|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|++.|++..+..+.+...|..+..++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 567888999999999999999999998774 45678889999999999999999999999888777888999999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
...|++++|++.|+++.+. -+-+...|..+..+|.+.|++++|.+.|+++. ..| +...|..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999999875 23356788999999999999999999999887 344 5788899999999999999999
Q ss_pred HHHHHHhhhCCCC
Q 036165 539 IAAKHLSELEPES 551 (566)
Q Consensus 539 ~~~~~~~~~~p~~ 551 (566)
+.+++++++.|+.
T Consensus 166 ~~~~kal~l~~~~ 178 (723)
T 4gyw_A 166 ERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhH
Confidence 9999999877654
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=7.1e-11 Score=110.12 Aligned_cols=176 Identities=8% Similarity=-0.016 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHhhhcCCC--C----
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANH-GYCDEAIELFNQMEERKKL--D---- 449 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~---- 449 (566)
.+++.+..+|.+.|++++|+..+++..+ .+ ..+++.+...|... |++++|+..|++..+..+. +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4555566666666666666666655442 11 34577778888885 8899998888888775221 1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC-CCh-----hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH---
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM-PRT-----EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF--- 519 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~--- 519 (566)
..++..+...+...|++++|+..++++.+. ... +.. ..|..++.++...|++++|...+++.. ..|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 346788888899999999999999998875 221 111 156777888889999999999999887 334321
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 520 ---VWGALLGACK--NHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 520 ---~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.+..++.++. ..+++++|+..|+++.+++|.+......+-..+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 2444555554 456788999999888888887766665554433
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=5.2e-10 Score=108.42 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=97.6
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCC----cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-hhHHH----
Q 036165 354 SSILPACASAANMRRGKEIHGCAIVMGVEG----DLHVRSALVDMYAKCGFISEARTLFDKMSE----RN-TVTWN---- 420 (566)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~---- 420 (566)
..+...+...|++++|...+....+..... ....+..+...+...|++++|...+++... ++ ...+.
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 334444455555555555555544432211 123444555566666666666666654431 11 11111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHhhhcCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCCCCh-hHHHH
Q 036165 421 -SMIFGCANHGYCDEAIELFNQMEERKKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKY---KIMPRT-EHYAC 491 (566)
Q Consensus 421 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~-~~~~~ 491 (566)
..+..+...|++++|...+++.....+.+ ...+..+...+...|++++|...++.+.... +..++. ..+..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 12233556677777777766665442111 2245566667777777777777777665431 111122 24556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
+..++...|+.++|...+++.... ..-......+...| +....+++.+.+..|-
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~~---~~~~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALKL---ANRTGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---HHHHCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---hccccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 667777888888888877766410 00001112233333 4555566666655553
No 81
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=3.3e-12 Score=105.89 Aligned_cols=143 Identities=9% Similarity=-0.049 Sum_probs=116.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036165 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 501 (566)
|...+...|++++|+..+++.....+.+...+..+...|.+.|++++|++.|+++.+. -+-++..|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3445556678888888888876654445556778888999999999999999999875 23467889999999999999
Q ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 502 LAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIA-AKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 502 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+++|...|+++. ..| ++.+|..+...|.+.|++++|.+. ++++++++|+++.++...+.++..+|
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 999999999887 334 688899999999999998776655 69999999999999999999999887
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=3.3e-11 Score=125.44 Aligned_cols=162 Identities=9% Similarity=0.038 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 036165 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFG 425 (566)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 425 (566)
+...++.+...+...|++++|...++++++..+. +...+..+..+|.+.|++++|+..|++..+ .+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456788888888888888888888888887544 567788888888888888888888887764 346678888888
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
|...|++++|++.|++..+..+.+...|+.+..++...|++++|++.|+++.+. -+-+...+..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888888877777788888888888888888888888888865 123467788888888888888888
Q ss_pred HHHHHhcC
Q 036165 506 YEMIKTMS 513 (566)
Q Consensus 506 ~~~~~~~~ 513 (566)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=1.2e-10 Score=100.16 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 456777888999999999999999998877778889999999999999999999999999876 344678889999999
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++..|+++..+..++.+|...|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 99999999999999887 44678889999999999999999999999999999999999999999998876
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=8.3e-11 Score=105.33 Aligned_cols=148 Identities=14% Similarity=0.061 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKK-LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+..+......+...|++++|...|++..+..+ ++...+..+..++...|++++|++.++++.+. .+.+...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34444455555555555555555555555533 45555555555555555555555555555542 1223344555555
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC--CchHHHHHHHHHh
Q 036165 495 LLGRAGRLAEAYEMIKTMS-TEP-DL-------FVWGALLGACKNHGNIELAEIAAKHLSELEPE--SAANNMLLTDLYA 563 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~-~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 563 (566)
+|.+.|++++|...+++.. ..| +. ..|..+...+...|++++|+..++++++.+|+ ++..+..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555555555555555554 122 23 33455555555666666666666666666666 5566666665555
Q ss_pred hc
Q 036165 564 NA 565 (566)
Q Consensus 564 ~~ 565 (566)
.+
T Consensus 165 ~~ 166 (228)
T 4i17_A 165 NN 166 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=6.5e-10 Score=107.74 Aligned_cols=260 Identities=10% Similarity=-0.029 Sum_probs=168.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 036165 289 GFSKSGDQVMVSKLFQLMRAKGVEPDV----VSWTSVISGLVHNFCNDEAFDTFKEMLSQGF-CPT----SATISSILPA 359 (566)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~ 359 (566)
.+...|++++|...+++........+. ..++.+...+...|++++|...+++..+... ..+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334455555555555555443211111 1334444555666666666666666543210 011 1224455566
Q ss_pred HHccCchHHHHHHHHHHHHh----CCC--C-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------ChhHHHHHHH
Q 036165 360 CASAANMRRGKEIHGCAIVM----GVE--G-DLHVRSALVDMYAKCGFISEARTLFDKMSE--R------NTVTWNSMIF 424 (566)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~l~~ 424 (566)
+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++..+ + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66777777777777666542 221 2 345566788899999999999999987653 1 1346777888
Q ss_pred HHHhcCChHHHHHHHHHhhhc-CCCC-HHHHH-----HHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHH
Q 036165 425 GCANHGYCDEAIELFNQMEER-KKLD-HLSFT-----AVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVD 494 (566)
Q Consensus 425 ~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 494 (566)
.+...|++++|...+++.... ..++ ...+. ..+..+...|++++|...+++.... ...+. ...+..+..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHH
Confidence 899999999999999998765 2222 12222 2334477899999999999988753 21111 224667889
Q ss_pred HHHhcCCHHHHHHHHHhcCC----CC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 495 LLGRAGRLAEAYEMIKTMST----EP---DL-FVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~----~p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
++...|++++|...+++... .+ +. .++..+..++...|+.++|...++++++..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999988751 11 22 3566677889999999999999999987543
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.2e-09 Score=106.15 Aligned_cols=158 Identities=5% Similarity=-0.079 Sum_probs=78.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCChhHHHHHHHHhhhC----C-CCc-cHHHHH
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMVE-----KD----IVAMNAMVSGYVQRGLATEALNLVEEIGTP----R-VKP-NVVTWN 284 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p-~~~~~~ 284 (566)
....+...|++++|...|++... ++ ..++..+...+...|++++|+..+++..+. + ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566666666666665522 11 234555666666666666666666554331 1 011 133455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAK----GVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLS-----QGFCPTSATIS 354 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 354 (566)
.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 5556666666666666666555432 1000 123445555555556666666666555544 21 11133344
Q ss_pred HHHHHHHccCchHHHHHHHHHHHH
Q 036165 355 SILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
.+...+...|++++|...+++..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=4.3e-10 Score=102.98 Aligned_cols=179 Identities=11% Similarity=-0.022 Sum_probs=126.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFT 454 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~ 454 (566)
+...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|...|+++.+..+.+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666677777777777777777664 32 4456667777777777888887777777763322 34566
Q ss_pred HHHHHHhc--------cCChHHHHHHHHHhHHhcCCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 036165 455 AVLTACCH--------VGLVELGQRLFNMMQEKYKIMPRTEHY-----------------ACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 455 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 509 (566)
.+..++.. .|++++|+..|+++.+.+ +.+.... ..+..+|.+.|++++|...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 66667776 778888888888777652 1122223 56688899999999999999
Q ss_pred HhcC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhhCCCCc---hHHHHHHHHHhh
Q 036165 510 KTMS-TEPD----LFVWGALLGACKNH----------GNIELAEIAAKHLSELEPESA---ANNMLLTDLYAN 564 (566)
Q Consensus 510 ~~~~-~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 564 (566)
+++. ..|+ ...+..+..+|... |++++|+..++++++..|+++ .+...+..++..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 9886 2343 45677788888766 899999999999999999996 445556665543
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=7.3e-10 Score=89.50 Aligned_cols=132 Identities=19% Similarity=0.188 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
.|..+...+...|++++|..+++++.+..+.+...+..+...+...|++++|...++++... . +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHH
Confidence 56777888889999999999999998877777888899999999999999999999999875 2 445677888999999
Q ss_pred hcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 498 RAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
+.|++++|.+.++++. .+.+..++..++..+.+.|++++|...++++++.+|++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999876 34567888899999999999999999999999998864
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=4.2e-10 Score=104.12 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=99.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--------
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSE-------R----NTVTWNSMIFGCANHGYCDEAIELFNQMEER-------- 445 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 445 (566)
..++..+...|...|++++|...+++..+ + ...++..+...|...|++++|...++++.+.
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455556666666666666665554432 1 1345666777777778888888777777664
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc------CCCC-ChhHHHHHHHHHHhcC------CHHHHHHHHHhc
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY------KIMP-RTEHYACMVDLLGRAG------RLAEAYEMIKTM 512 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~ 512 (566)
.+....++..+..++...|++++|...++++.+.. ...+ ....+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 12234567888888889999999999888887531 1122 2234444444444333 344455555554
Q ss_pred CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 513 ST-EP-DLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 513 ~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
.. .| ...++..+...|...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 42 22 35567888899999999999999999998753
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=3.4e-09 Score=96.69 Aligned_cols=182 Identities=11% Similarity=-0.012 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-----NTVTWNSMIFGCANHGYCDEAIELFNQME 443 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 443 (566)
+...++...+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555666655544 334455567888888899999999999887432 44567777888999999999999999987
Q ss_pred hcCCC-----CHHHHHHHHHH--Hhc--cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 444 ERKKL-----DHLSFTAVLTA--CCH--VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514 (566)
Q Consensus 444 ~~~~~-----~~~~~~~l~~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 514 (566)
+. .| +..+...++.+ ... .+++.+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+..
T Consensus 164 ~~-~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA-IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH-SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc-CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 34555555555 333 34899999999998754 45533334444588999999999999886552
Q ss_pred ------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 515 ------------EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 515 ------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
..++.++..++......|+ +|.++++++.+..|++|-....
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 2356666566666666787 8899999999999999876543
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.16 E-value=1.2e-09 Score=96.07 Aligned_cols=138 Identities=9% Similarity=-0.000 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
..+..+|...|++++|+..|++..+..|.+...+..+..++...|++++|+..|+++.+. -+.+...+..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 347888999999999999999999988888999999999999999999999999999976 234577888888888766
Q ss_pred CC--HHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 500 GR--LAEAYEMIKTMSTEPDLF--VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 500 g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
|. .+.+...+++.. .|++. .+.....++...|++++|+..++++++++|++. ....|..+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 54 455667777665 44443 445556677788999999999999999999754 44555554
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2.6e-10 Score=119.34 Aligned_cols=199 Identities=11% Similarity=-0.020 Sum_probs=157.5
Q ss_pred HccCchHHHHHHHHHHH--------HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 036165 361 ASAANMRRGKEIHGCAI--------VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANH 429 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (566)
...|++++|.+.++.+. +.. +.+...+..+..+|.+.|++++|+..|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999887 433 23567788888999999999999999998875 4667888889999999
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
|++++|.+.|++..+..+.+...+..+..++...|++++ ++.|+++.+. -+.+...|..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998877788899999999999999999 9999999875 2335678889999999999999999999
Q ss_pred HhcC-CCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 510 KTMS-TEPD-LFVWGALLGACKNHGN-----IELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 510 ~~~~-~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
+++. ..|+ ...|..+..++...|+ .++..++.+...+..++++.....-..++.
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~ 618 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLG 618 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 9987 4455 5667777777766665 455566666666677788777766665554
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.12 E-value=1.9e-09 Score=85.98 Aligned_cols=110 Identities=9% Similarity=-0.041 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGAC 528 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 528 (566)
..+......+.+.|++++|++.|+++.+. .+.+...|..+..+|.+.|++++|...++++. .+.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 46778888999999999999999999875 34467888999999999999999999999887 445688999999999
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
...|++++|+..++++++++|+++.++..|++++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999998865
No 94
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=2e-09 Score=110.66 Aligned_cols=160 Identities=7% Similarity=-0.043 Sum_probs=114.6
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036165 398 CGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
.|++++|...|++..+ .+...|..+...+...|++++|.+.|++..+..+.+...+..+..++...|++++|.+.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3677777777777664 3466777788888888888888888888888777777888888888888888888888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhCC
Q 036165 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNH---GNIELAEIAAKHLSELEP 549 (566)
Q Consensus 475 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p 549 (566)
++.+. .+.+...+..+..+|.+.|++++|.+.++++. ...+...+..+...+... |+.++|.+.++++++.+|
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 88875 23356778888888888888888888888876 334577788888888888 888888888888888888
Q ss_pred CCchHHHHHH
Q 036165 550 ESAANNMLLT 559 (566)
Q Consensus 550 ~~~~~~~~l~ 559 (566)
++...+..++
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8776665543
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=2.8e-09 Score=111.48 Aligned_cols=182 Identities=8% Similarity=-0.062 Sum_probs=141.7
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 036165 326 VHNFCNDEAFDTFKEML--------SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (566)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++.+.+.... +...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888899999998887 32 2445567778888888899999999999988887654 67788888888889
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036165 398 CGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
.|++++|+..|++..+ .+...|..+..++.+.|++++ ++.|++..+..+.+...|..+..++...|++++|++.|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988764 356778888888888999988 889998888777788888889999999999999999998
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhcC
Q 036165 475 MMQEKYKIMPR-TEHYACMVDLLGRAGR--------LAEAYEMIKTMS 513 (566)
Q Consensus 475 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 513 (566)
++.+ ..|+ ...+..+..++...|+ +++|.+.++.+.
T Consensus 559 ~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 559 EVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp TSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred hhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 8874 3554 4667777777766544 666666666664
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=7.6e-10 Score=102.35 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-C
Q 036165 282 TWNTLISGFSKSGDQVMVSKLFQLMRAK------GV-EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ------GF-C 347 (566)
Q Consensus 282 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~ 347 (566)
++..+...+...|++++|...++++.+. +- .....++..+..+|...|++++|...+++..+. .. +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444322 11 112334444444455555555555555444332 00 1
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHh------CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 348 PTSATISSILPACASAANMRRGKEIHGCAIVM------GVEG-DLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 348 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
.....+..+...+...|++++|...++++.+. +..| ...++..+..+|.+.|++++|...+++.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11223344444444444444444444444332 0011 2334444555555555555555555443
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=1.4e-07 Score=94.05 Aligned_cols=374 Identities=10% Similarity=-0.016 Sum_probs=219.3
Q ss_pred hcC-ChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCC-hhHHHHHH
Q 036165 125 ECQ-NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD-IGTGEKIH 202 (566)
Q Consensus 125 ~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 202 (566)
+.| +++.|+.+|+... ..+-. |+++.+..+|++.... .|+...|..-+....+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 3667777766542 22222 8899999999998874 5688888877777666553 45677788
Q ss_pred HHHHHc-CCC-CchhHHHHHHHHHH----hcCCHHHHHHHHHhcCC-C--Ch-hhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 203 SLVLKH-SFG-TDAFVVSSLIDMYS----KCGSVEKAKKVFDEMVE-K--DI-VAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 203 ~~~~~~-g~~-~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
+..+.. |.. .+..+|...+..+. ..|+++.+.++|+.... | +. ..|...... .+......+..++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 877764 433 35677777776654 24567788888888744 2 11 122222111 11111222222222211
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHHCC
Q 036165 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF--C-----NDEAFDTFKEMLSQG 345 (566)
Q Consensus 273 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~ 345 (566)
+.+..|..+++.+...--..+...|...+.--...+ - .+.+..+|++++..
T Consensus 151 ---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~- 208 (493)
T 2uy1_A 151 ---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS- 208 (493)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-
Confidence 123334444443332100012334544444322211 1 23466778887764
Q ss_pred CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHHhcC----------C-
Q 036165 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE-ARTLFDKMS----------E- 413 (566)
Q Consensus 346 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~----------~- 413 (566)
.+.+...+...+.-+...|+.+.|..+++..... +.+...+.. |....+.++ ...+.+... .
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 3455666777777777888888888888888887 223333322 222111111 112222111 0
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 036165 414 -RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH-VGLVELGQRLFNMMQEKYKIMPRTEHYAC 491 (566)
Q Consensus 414 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 491 (566)
.....|...+....+.++.+.|..+|++. ...+.+...|...+..-.. .++.+.|..+|+...+.++ -++..+..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHH
Confidence 11245666677776788899999999999 3322344555433332222 3369999999999998743 34556777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999999999984 3578899999888899999999999999885
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.3e-08 Score=94.71 Aligned_cols=201 Identities=12% Similarity=-0.009 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCchHHH
Q 036165 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ----GFCPT-SATISSILPACASAANMRRG 369 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a 369 (566)
++++|...++.. ...|...|++++|...|++..+. |-+++ ..++..+..++...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 34577788888888888877643 32222 45678888888888999999
Q ss_pred HHHHHHHHHhCCC---C--cHhHHHHHHHHHHhc-CCHHHHHHHHHhcCC--C---C----hhHHHHHHHHHHhcCChHH
Q 036165 370 KEIHGCAIVMGVE---G--DLHVRSALVDMYAKC-GFISEARTLFDKMSE--R---N----TVTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 370 ~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~ 434 (566)
...+++.++.... + ...+++.+..+|... |++++|+..|++..+ | + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887664211 1 145778889999996 999999999988764 1 1 3468888999999999999
Q ss_pred HHHHHHHhhhcCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh------HHHHHHHHHH--hc
Q 036165 435 AIELFNQMEERKKLDH-------LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE------HYACMVDLLG--RA 499 (566)
Q Consensus 435 A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~ 499 (566)
|+..|++..+..+.+. ..|..+..++...|++++|...+++..+ +.|+.. .+..++.+|. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999998732221 1577888899999999999999999874 344421 3445566664 45
Q ss_pred CCHHHHHHHHHhcC
Q 036165 500 GRLAEAYEMIKTMS 513 (566)
Q Consensus 500 g~~~~A~~~~~~~~ 513 (566)
+++++|...|+++.
T Consensus 254 ~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 254 EQLSEHCKEFDNFM 267 (292)
T ss_dssp TTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccCC
Confidence 78999999998886
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=1.2e-07 Score=87.50 Aligned_cols=229 Identities=6% Similarity=-0.011 Sum_probs=175.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--chHHHHHHHHHHHHhCCCCcHhHHHHHHHHH----Hhc---CCH
Q 036165 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAA--NMRRGKEIHGCAIVMGVEGDLHVRSALVDMY----AKC---GFI 401 (566)
Q Consensus 331 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 401 (566)
.++|+..++.++... +-+...++.--.++...+ +++++...++.++...++ +..+++.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356777777776642 223334555555666666 777777777777776554 444454433333 444 788
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC------hHHHH
Q 036165 402 SEARTLFDKMSE---RNTVTWNSMIFGCANHGYCD--EAIELFNQMEERKKLDHLSFTAVLTACCHVGL------VELGQ 470 (566)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~ 470 (566)
+++..+++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+..+-|...|+.-...+...|. +++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 999999988875 57778888777888888888 99999999999888899999988888888877 89999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE-AYEMIKTMST-----EPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+.++.++.. .+-|...|+.+...+.+.|+..+ +..+.+++.. ..++..+..++.+|.+.|+.++|.++++.+
T Consensus 207 ~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 207 NYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999875 34578889999999999888544 5667777652 347888999999999999999999999999
Q ss_pred hh-hCCCCchHHHHHHHHHh
Q 036165 545 SE-LEPESAANNMLLTDLYA 563 (566)
Q Consensus 545 ~~-~~p~~~~~~~~l~~~~~ 563 (566)
.+ .+|....++...++.+.
T Consensus 285 ~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp HHTTCGGGHHHHHHHHHTCC
T ss_pred HhccChHHHHHHHHHHhhcc
Confidence 96 89999998888776543
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=1.9e-08 Score=91.84 Aligned_cols=160 Identities=11% Similarity=-0.004 Sum_probs=124.9
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 404 ARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK--LDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 404 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
|+..|++..+ ++..++..+..++...|++++|++++.+.....+ .+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777776653 4556667788899999999999999999877643 5667889999999999999999999999986
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-
Q 036165 479 KYKIMP-----RTEHYACMVDL--LGRAG--RLAEAYEMIKTMSTE-PDLFVWGALLGACKNHGNIELAEIAAKHLSEL- 547 (566)
Q Consensus 479 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 547 (566)
. .| +..+...|+.+ ....| ++++|..+|+++..+ |+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5 56 24555556555 44444 999999999998744 65444455555899999999999999988876
Q ss_pred ---------CCCCchHHHHHHHHHhhcC
Q 036165 548 ---------EPESAANNMLLTDLYANAG 566 (566)
Q Consensus 548 ---------~p~~~~~~~~l~~~~~~~g 566 (566)
+|+++.++.+++.+....|
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 4889999978766665443
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=4.5e-09 Score=97.47 Aligned_cols=161 Identities=7% Similarity=-0.088 Sum_probs=94.4
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 459 (566)
.+...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...++++....+.+..........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3445555666666666777777766666553 2445566666666666777777666666655433222222222233
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHHHHHHhcCCHH
Q 036165 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD---LFVWGALLGACKNHGNIE 535 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~ 535 (566)
+...++.++|...+++.... .+.+...+..+..+|...|++++|.+.++++. ..|+ ...+..++..+...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 45556666666666666654 23345566666666666666666666666665 2232 445666666666666666
Q ss_pred HHHHHHHHHh
Q 036165 536 LAEIAAKHLS 545 (566)
Q Consensus 536 ~A~~~~~~~~ 545 (566)
+|...+++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666654
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1.1e-08 Score=91.15 Aligned_cols=186 Identities=12% Similarity=0.017 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh----HHHH
Q 036165 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEG--DLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTV----TWNS 421 (566)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~ 421 (566)
...+..+...+...|++++|...++.+++..+.. ....+..+..+|.+.|++++|+..|+++.+ |+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445555666777777777777777777654332 134566677777777777777777776653 3221 3333
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hH------------
Q 036165 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EH------------ 488 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~------------ 488 (566)
+..++...+.. .+ ..|..+.......|++++|...|+++.+. .|+. ..
T Consensus 84 ~g~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL-----------QGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh-----------hhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHH
Confidence 44444331100 00 00111111122344455555555555432 1221 11
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 489 -----YACMVDLLGRAGRLAEAYEMIKTMS-TEPD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 489 -----~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
...+...|.+.|++++|...|+++. ..|+ ...+..+..++.+.|+.++|...++.+....|++...
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1346678899999999999999987 3344 2568888899999999999999999999999987653
No 103
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=8.4e-09 Score=94.31 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHH
Q 036165 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHY 489 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 489 (566)
.+...+..+...+.+.|++++|...|+++.+..+.+ ...+..+..++...|++++|+..|+++.+.+.-.|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 456677778889999999999999999999886555 678899999999999999999999999986322222 4567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHhcC-CCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 036165 490 ACMVDLLGR--------AGRLAEAYEMIKTMS-TEPD-LFVW-----------------GALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 490 ~~l~~~~~~--------~g~~~~A~~~~~~~~-~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 542 (566)
..+..++.+ .|++++|...|+++. ..|+ ...+ ..+...|.+.|++++|+..++
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 788889998 999999999999987 2343 3333 556788999999999999999
Q ss_pred HHhhhCCCC---chHHHHHHHHHhhc
Q 036165 543 HLSELEPES---AANNMLLTDLYANA 565 (566)
Q Consensus 543 ~~~~~~p~~---~~~~~~l~~~~~~~ 565 (566)
++++..|++ +..+..++.+|...
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999984 55888999888754
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=1.6e-08 Score=88.72 Aligned_cols=187 Identities=9% Similarity=-0.031 Sum_probs=125.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.+......+...|++++|+..|++.++. .|+........ .... ...........+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~----~~~~--------------~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT----NVDK--------------NSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH----HSCT--------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh----hhcc--------------hhhhhHHHHHHHHHHHH
Confidence 3344455667778888888888877664 33322111000 0000 00012233344888899
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC--hHHHHH
Q 036165 397 KCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL--VELGQR 471 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~ 471 (566)
+.|++++|+..|++..+ .+...|..+..++...|++++|...|++..+..|.+..++..+..++...|+ .+.+..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998774 4677888999999999999999999999999888888899999988876654 344455
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHH
Q 036165 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLG 526 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~ 526 (566)
.++... ...|....+.....++...|++++|...|+++. ..|+......+..
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555543 223333344556677778899999999999987 5688765555443
No 105
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=1.4e-08 Score=80.56 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
...+..+...+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|...++++. .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456778888888899999999999988875 23456778888899999999999999998876 34567888999999
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+...|++++|...++++++..|+++..+..++.++..+|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998876
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=4.6e-07 Score=90.40 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHh-cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSERN--TVTWNSMIFGCAN-HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
.+|...+..+.+.++.+.|..+|++...|. ...|......-.. .++.+.|..+|+...+..+.++..+...+....+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456677777777888999999999884333 2333322222222 3369999999999988765556666777777788
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|+.+.|..+|+++. .....|...++.-.+.|+.+.+.++++++.
T Consensus 367 ~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 367 IGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 899999999998872 256778888887778899999988887765
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=1.5e-08 Score=86.29 Aligned_cols=156 Identities=10% Similarity=-0.049 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH-Hhcc
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA-CCHV 463 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 463 (566)
.......+.+.|++++|...|++..+ .+...+..+...+...|++++|...++++.+..+ +...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 44566677788888888888888775 4566777788888888888888888888776544 55443332222 1222
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD---LFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
+...+|+..++++.+. .+.+...+..+..++...|++++|...++++. ..|+ ...+..+...+...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2334567788887764 23346778888888888888888888888876 3443 4578888888888888888888
Q ss_pred HHHHHhh
Q 036165 540 AAKHLSE 546 (566)
Q Consensus 540 ~~~~~~~ 546 (566)
.|++++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=3.4e-08 Score=91.52 Aligned_cols=165 Identities=9% Similarity=-0.025 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHH-H
Q 036165 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSM-I 423 (566)
Q Consensus 347 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~ 423 (566)
+.+...+..+...+...|+++.|...++.+.+..+. +...+..+..+|.+.|++++|...++++.. |+....... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 344455666777777888888888888888776654 677888899999999999999999999885 654433332 2
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 503 (566)
..+...++.++|...+++.....+.+...+..+..++...|++++|...+.++.....-..+...+..++..|...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 34667788889999999999888889999999999999999999999999999986111122568899999999999999
Q ss_pred HHHHHHHhc
Q 036165 504 EAYEMIKTM 512 (566)
Q Consensus 504 ~A~~~~~~~ 512 (566)
+|...+++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999888764
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=1.8e-08 Score=81.09 Aligned_cols=124 Identities=20% Similarity=0.185 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
+..+...+...|++++|..+++++.+ .+...+..+...+...|++++|...++++.+..+.+...+..+...+...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 44455566666666666666665542 344556666666667777777777777776665556666777777777777
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
++++|.+.++++.+. .+.+...+..++.++.+.|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 777777777777654 23345666677777777777777777776654
No 110
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.95 E-value=1.3e-08 Score=81.81 Aligned_cols=117 Identities=7% Similarity=-0.080 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHH
Q 036165 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALL 525 (566)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 525 (566)
.+...+..+...+...|++++|...++++.+. .+.+...+..+..+|...|++++|...++++. .+.+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34557888888888899999999999888754 23367788888888999999999999998876 345678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.++.+.|++++|...++++++.+|++...+..++.++..+|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998765
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=8e-09 Score=96.93 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKK--LD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TE 487 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 487 (566)
++..+...|.. |++++|+..|++..+..+ .+ ..++..+..++...|++++|+..++++.+...-.++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44455555555 666666666666554411 11 235566666666666666666666666543110111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+..++.++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44455556666667777766666654
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.95 E-value=5.1e-09 Score=86.22 Aligned_cols=122 Identities=11% Similarity=-0.045 Sum_probs=93.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TE 515 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 515 (566)
.|+++....+.+...+..+...+...|++++|+..|+++... -+.+...|..+..+|.+.|++++|...|+++. .+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344444444445566777888888888999999888888865 23467778888888888999999998888876 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
.++..|..+..+|...|++++|...+++++++.|+++........+
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 4677888888889999999999999999999888887765544433
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=5.6e-09 Score=86.25 Aligned_cols=141 Identities=8% Similarity=-0.079 Sum_probs=92.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
|..++...|++++|+..++..... +...+..+...|.+.|++++|++.|++..+..+.+..+|..+..++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 344555667777777777766652 23455567777777888888888888777776677777888888888888888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM-IKTMS-TEP-DLFVWGALLGACKNHGN 533 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~-~~p-~~~~~~~l~~~~~~~g~ 533 (566)
+|+..|+++.+. .+-++..+..+..+|.+.|++++|.+. ++++. ..| ++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888777764 123456777777777777777665544 46554 233 45566655566655553
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=8.4e-08 Score=84.39 Aligned_cols=184 Identities=10% Similarity=-0.099 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHhh
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHG----YCDEAIELFNQME 443 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~ 443 (566)
|...+.+..+.| ++..+..+...|...+++++|+..|++..+ .+...+..|...|.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 556666677777777888888888877664 456667777777766 5 7888888888886
Q ss_pred hcCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC
Q 036165 444 ERKKLDHLSFTAVLTACCH----VGLVELGQRLFNMMQEKYKIM-PRTEHYACMVDLLGR----AGRLAEAYEMIKTMST 514 (566)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 514 (566)
+. .+...+..|...+.. .+++++|.+.|++..+. +.. ..+..+..|..+|.. .+++++|..+|++...
T Consensus 81 ~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 53 456677788888877 78899999999988754 321 026778888888888 7889999999998864
Q ss_pred C-CCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 515 E-PDLFVWGALLGACKNH-G-----NIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 515 ~-p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
. ++...+..|...|... | +.++|...++++.+.+ ++.....|..+
T Consensus 158 ~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 158 LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 3 5667788888887654 3 8999999999999886 44555555443
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=7e-09 Score=88.39 Aligned_cols=146 Identities=11% Similarity=0.069 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH-H
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL-L 496 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 496 (566)
.+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|+..++++... .|++..+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 45566778889999999999999999887888899999999999999999999999998765 3344433333222 2
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--chHHHHHHHHHhhcC
Q 036165 497 GRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPES--AANNMLLTDLYANAG 566 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g 566 (566)
.+.+...+|...+++.. ..| +...+..+..++...|++++|+..++++++.+|+. +..+..++.+|..+|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 23233445788888876 334 68899999999999999999999999999999875 569999999998766
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=7.7e-08 Score=90.15 Aligned_cols=200 Identities=10% Similarity=-0.002 Sum_probs=147.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 406 (566)
..|++++|.+++++..+.. +.. .+...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577888888888776531 111 011146677766665553 556778889988888
Q ss_pred HHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HHHHHHHHHHHhccCChHHHHH
Q 036165 407 LFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLD----HLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 407 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+. ...+ ..++..+..++.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876653 12 347888889999999999999999998765 2222 2468888889988 99999999
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 036165 472 LFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST----EPD----LFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 472 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
.+++..+.+.-..+ ..++..+..+|.+.|++++|...++++.. .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998764211111 46788899999999999999999998871 122 2356677777888899999999
Q ss_pred HHHHHhhhCCCCch
Q 036165 540 AAKHLSELEPESAA 553 (566)
Q Consensus 540 ~~~~~~~~~p~~~~ 553 (566)
.+++++ ..|+...
T Consensus 217 ~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 217 CVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHT-TSTTSTT
T ss_pred HHHHHh-CCCCCCC
Confidence 999999 9997654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=6.4e-08 Score=85.23 Aligned_cols=124 Identities=10% Similarity=-0.049 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
+..+...+...|++++|...|++...++...|..+...|...|++++|...|++..+..+.+...+..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 44567777888899999999988888888888888888888899999999998888877777888888888888889999
Q ss_pred HHHHHHHHhHHhcCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 468 LGQRLFNMMQEKYKIMPRT----------------EHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+|.+.++++.+. .+.+. ..+..+..+|.+.|++++|...++++.
T Consensus 89 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 89 LAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999888888864 11122 556666777777777777777777665
No 118
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=1.9e-08 Score=85.76 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=108.1
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH--H
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL-LGRAGRL--A 503 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 503 (566)
...|++++|...+++..+..+.+...+..+..++...|++++|...++++.+. .+.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 35678888999999988877778889999999999999999999999998875 23466778888888 7788998 9
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 504 EAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 504 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+|...++++. .+.+...+..+...+...|++++|...++++++..|+++.....+..+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999999887 334578888899999999999999999999999999988776655544
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=7.7e-08 Score=85.60 Aligned_cols=187 Identities=9% Similarity=-0.065 Sum_probs=119.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH--hHHH
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC-P-TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL--HVRS 389 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 389 (566)
+...+..+...+...|++++|+..|+++++.... | ....+..+..++...|++++|...++.+++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778899999999999999999875321 2 1356788889999999999999999999987654221 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH----------------
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF---------------- 453 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------------- 453 (566)
.+..++.+.|.. .+ ..|..+...+...|+.++|...|+++.+..|.+...+
T Consensus 83 ~~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 455555442210 00 0111222223334455555555555554433222221
Q ss_pred -HHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 454 -TAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 454 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
..+...+.+.|++++|+..|+++.+.+.-.| ....+..++.+|.+.|++++|.+.++.+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3456677888999999999999887621111 12567788899999999999999988766
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.88 E-value=5.2e-08 Score=77.87 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLG 526 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 526 (566)
+...+..+...+...|++++|...++++... .+.+...+..+..++...|++++|...+++.. .+.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3456777788888888999999988888875 23456778888888889999999999888876 3345778888899
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988765
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=1.3e-07 Score=83.23 Aligned_cols=134 Identities=9% Similarity=-0.042 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|+..++++.+. .+.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 45566778889999999999999874 568889999999999999999999999999976 2446788999999999
Q ss_pred hcCCHHHHHHHHHhcC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 498 RAGRLAEAYEMIKTMS-TEP-D----------------LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
+.|++++|...++++. ..| + ...+..+..++.+.|++++|...++++++..|++.....
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 159 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 159 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchH
Confidence 9999999999999886 222 2 378889999999999999999999999999997754433
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=2.6e-08 Score=102.29 Aligned_cols=135 Identities=16% Similarity=0.029 Sum_probs=105.8
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 508 (566)
.|++++|.+.+++..+..+.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998877778899999999999999999999999999864 234578899999999999999999999
Q ss_pred HHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 509 IKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 509 ~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
+++.. .+.+...|..+..++.+.|++++|.+.++++++.+|+++..+..++.+|..+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99987 3456889999999999999999999999999999999999999999999876
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=1.1e-08 Score=84.15 Aligned_cols=102 Identities=6% Similarity=-0.095 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLG 526 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 526 (566)
+...+..+...+...|++++|+..|+++... -+.++..|..+..+|.+.|++++|...|+++. .+.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3445666666777777777777777777754 23346667777777777777777777777765 2335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 527 ACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
+|.+.|++++|+..|++++++.|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 77777777777777777777777654
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=2e-08 Score=82.08 Aligned_cols=122 Identities=10% Similarity=-0.047 Sum_probs=90.3
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC
Q 036165 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEP 516 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p 516 (566)
|+++.+..+.+...+..+...+...|++++|+..|+++... .+.+...|..+..+|.+.|++++|...++++. .+.
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 33333333334456667777888888888888888888765 23466778888888888888888888888876 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
++..|..+..++...|++++|...++++++..|+++........+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 5677888888888999999999999999988888887766655543
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=5.1e-07 Score=79.33 Aligned_cols=170 Identities=11% Similarity=-0.028 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----chHHHHHHHH
Q 036165 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA----NMRRGKEIHG 374 (566)
Q Consensus 299 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~ 374 (566)
|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..+...+.. + ++++|...++
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554442 45555566666666666666666666666544 33444445555555 4 6666666666
Q ss_pred HHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHh----cCChHHHHHHHHH
Q 036165 375 CAIVMGVEGDLHVRSALVDMYAK----CGFISEARTLFDKMSERN-----TVTWNSMIFGCAN----HGYCDEAIELFNQ 441 (566)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~ 441 (566)
+..+.| ++..+..|..+|.. .+++++|...|++..+.+ ...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665544 44555666666665 677777777777776522 4667777777776 6677777777777
Q ss_pred hhhcCCCCHHHHHHHHHHHhcc-C-----ChHHHHHHHHHhHHh
Q 036165 442 MEERKKLDHLSFTAVLTACCHV-G-----LVELGQRLFNMMQEK 479 (566)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 479 (566)
..+. +.+...+..|...|... | ++++|...+++..+.
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 7665 34445666666666532 2 677777777777766
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=7.2e-08 Score=76.78 Aligned_cols=113 Identities=7% Similarity=-0.108 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...++++. .+.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345677778888889999999999888875 23457788888899999999999999998877 34467888999999
Q ss_pred HHhcCCHHHHHHHHHHHhhhC------CCCchHHHHHHHHHhh
Q 036165 528 CKNHGNIELAEIAAKHLSELE------PESAANNMLLTDLYAN 564 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 564 (566)
+...|++++|...++++++.+ |+++.....+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999888887654
No 127
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.4e-07 Score=77.31 Aligned_cols=117 Identities=9% Similarity=-0.058 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHH
Q 036165 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFV 520 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 520 (566)
+.+...+..+...+...|++++|...+++..+. .|+ ...+..+..+|...|++++|...+++.. .+.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 345667888888899999999999999998853 565 6778888999999999999999998876 3346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
|..+..++...|++++|...++++++.+|+++.....+..+....|
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 147 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999999999998876543
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=1.1e-07 Score=85.57 Aligned_cols=194 Identities=10% Similarity=-0.080 Sum_probs=130.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcHhHHHHH-------HHHHHhcCCHHHHHHHHHhcCC--C-------C----------
Q 036165 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSAL-------VDMYAKCGFISEARTLFDKMSE--R-------N---------- 415 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~---------- 415 (566)
..++.+.|.+.|..+.+..+. ....|..+ ...+.+.++..++...+++-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 356666677777776665543 34455544 3444444444455444444433 1 1
Q ss_pred -----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhH
Q 036165 416 -----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEH 488 (566)
Q Consensus 416 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 488 (566)
...+-.....+...|++++|.++|+.+.... |+......+...+.+.+++++|+..|+..... . .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHH
Confidence 1123345566778888999988888877643 33336666666888899999999999865432 1 111 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKTMSTE---P--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
+..+..++.+.|++++|++.|++.... | ....+.....++.+.|+.++|...|++++..+|+ +.+...|.+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 777888999999999999999988622 3 2346777788889999999999999999999998 777766654
No 129
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=1.6e-07 Score=73.42 Aligned_cols=112 Identities=12% Similarity=-0.040 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
...+..+...+...|++++|...++++... .+.+...+..+..++.+.|++++|...++++. .+.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 446677777888888888888888888865 23466778888888888899999988888876 33467788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
+...|++++|...++++++.+|+++..+..++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999998887753
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=1.7e-07 Score=87.14 Aligned_cols=160 Identities=11% Similarity=-0.063 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHhhhcCC----CC--HH
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE--R-NT------VTWNSMIFGCANHGYCDEAIELFNQMEERKK----LD--HL 451 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~ 451 (566)
.+...+..+...|++++|...+.+..+ + .. ..+..+...+...|++++|...+++..+... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566677788888888887765442 1 11 1233455566777888899888888776411 11 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-------CH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTMST-EP-------DL 518 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-------~~ 518 (566)
+++.+...|...|++++|...++++.+.....|+ ..++..++.+|.+.|++++|...+++... .+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888888899999999988888732111222 25778888888999999999888887651 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 036165 519 FVWGALLGACKNHGNIELA-EIAAKHLSE 546 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 546 (566)
.+|..+..+|.+.|++++| ...++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888888899999998 777888775
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=9.5e-07 Score=82.06 Aligned_cols=157 Identities=11% Similarity=-0.068 Sum_probs=119.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C---C----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HHHHH
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE--R---N----TVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLD----HLSFT 454 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~ 454 (566)
..+..+...|++++|...+++..+ + + ...+..+...+...+++++|+..++++.+. ..++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999988664 1 1 112334666677778999999999999885 2233 23689
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CCC-HHHH
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKY----KIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMST-------EPD-LFVW 521 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p~-~~~~ 521 (566)
.+..+|...|++++|...++++.+.. +..+. ..++..++.+|.+.|++++|...+++... .+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999988531 11111 24778899999999999999999988761 122 5678
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhh
Q 036165 522 GALLGACKNHG-NIELAEIAAKHLSE 546 (566)
Q Consensus 522 ~~l~~~~~~~g-~~~~A~~~~~~~~~ 546 (566)
..+..+|.+.| ++++|...++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999 56999999999986
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=8e-06 Score=76.12 Aligned_cols=231 Identities=8% Similarity=-0.023 Sum_probs=164.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-C-CHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA-NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC-G-FISEA 404 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A 404 (566)
.+..++|++++++++... +-+...++.--..+...| .++++...++.++...++ +..+++.-..++.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 344457777777777653 233344555555555566 477778888777776554 666676666666665 6 78899
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-------h
Q 036165 405 RTLFDKMSE---RNTVTWNSMIFGCANHGYCD--------EAIELFNQMEERKKLDHLSFTAVLTACCHVGL-------V 466 (566)
Q Consensus 405 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~ 466 (566)
+.+++++.+ .|..+|+--.-.+.+.|.++ ++++.++++.+..+-|...|+.....+.+.+. +
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 999998886 45667776655555555555 89999999999888899999999988888876 6
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhcCC--------CCCH
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL--------------------AEAYEMIKTMST--------EPDL 518 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~--------~p~~ 518 (566)
+++++.+++++.. .+-|...|+.+-..+.+.|+. .+..++..++.. .+++
T Consensus 225 ~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 225 QDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 8899999888875 345677888887777777654 445555555542 2577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh-hhCCCCchHHHHHHHHH
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLS-ELEPESAANNMLLTDLY 562 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~ 562 (566)
..+..++..|...|+.++|.++++.+. +.+|-...+....++.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 888899999999999999999999997 67888777776665544
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=8.1e-09 Score=98.04 Aligned_cols=146 Identities=8% Similarity=-0.081 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---------------HHHHHHHHHHH
Q 036165 399 GFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---------------HLSFTAVLTAC 460 (566)
Q Consensus 399 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~ 460 (566)
+++++|...++...+ | +...|..+...|.+.|++++|...|++..+..+.+ ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544444332 2 34567777888888888888888888888775544 46778888888
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH-
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELA- 537 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A- 537 (566)
.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++. .+.+...+..+..++.+.|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765 23456777788888888888888888888776 334566777777788888888777
Q ss_pred HHHHHHHhh
Q 036165 538 EIAAKHLSE 546 (566)
Q Consensus 538 ~~~~~~~~~ 546 (566)
...+++|++
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456777765
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=9.6e-07 Score=82.04 Aligned_cols=146 Identities=6% Similarity=-0.098 Sum_probs=114.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCHH------HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHL------SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYA 490 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 490 (566)
..+..+...|++++|..++++..+..+.+.. .+..+...+...|++++|+..++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999999886322222 3445777788889999999999999874122223 23689
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----C-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC------chHH
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMST----E-PD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPES------AANN 555 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~----~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 555 (566)
.++.+|...|++++|...++++.. . .+ ..++..+...|.+.|++++|...+++++++.++. ...+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999998761 1 12 3477889999999999999999999999765433 6789
Q ss_pred HHHHHHHhhcC
Q 036165 556 MLLTDLYANAG 566 (566)
Q Consensus 556 ~~l~~~~~~~g 566 (566)
..+|.+|..+|
T Consensus 240 ~~lg~~~~~~g 250 (293)
T 3u3w_A 240 YQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999998876
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.74 E-value=1.5e-07 Score=79.01 Aligned_cols=108 Identities=12% Similarity=-0.036 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
...+..+...+...|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|...++++. .+.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666667777777777777777777764 23356667777777777777777777777766 23456777777777
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
|...|++++|...++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 88888888888888888888887777544443
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=2e-08 Score=87.43 Aligned_cols=143 Identities=9% Similarity=-0.075 Sum_probs=65.6
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH----------------HHHH
Q 036165 394 MYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH----------------LSFT 454 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~ 454 (566)
.....|+++++.+.++...+ .....+..+...+...|++++|...|++..+..+.+. ..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 33444555555555543222 1233455566666677777777777777766533332 4444
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 532 (566)
.+..++...|++++|+..++++.+. .+.+...+..+..+|...|++++|...|++.. .+.+...+..+..++...|
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 5555555555555555555555443 12233444444555555555555555554443 1223344444444444444
Q ss_pred CHHHHH
Q 036165 533 NIELAE 538 (566)
Q Consensus 533 ~~~~A~ 538 (566)
+.+++.
T Consensus 171 ~~~~~~ 176 (198)
T 2fbn_A 171 EARKKD 176 (198)
T ss_dssp HHHC--
T ss_pred HHHHHH
Confidence 444443
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=2.6e-06 Score=78.55 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=163.4
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHH----Hhc---CC
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG--FISEARTLFDKMSE---RNTVTWNSMIFGC----ANH---GY 431 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 431 (566)
...++|....+.++...+. +..+++.-...+...| ++++++..++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3446888999999887655 6677888888888888 99999999998875 4556677655555 445 78
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC------HH
Q 036165 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE--LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR------LA 503 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~ 503 (566)
+++++++++++.+..+.|..+|+.-..++.+.|.++ ++++.++++.+. . +-|...|+.-..++.+.|+ ++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999999988889999999999999999988 999999999986 3 4477788887777777776 89
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhC---CCCchHHHHHHHHHhhcC
Q 036165 504 EAYEMIKTMS--TEPDLFVWGALLGACKNHGNIE-LAEIAAKHLSELE---PESAANNMLLTDLYANAG 566 (566)
Q Consensus 504 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g 566 (566)
++++.++++. ..-|...|+.+...+.+.|+.. ++....+++.+.+ |.++.+...++.+|.+.|
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 9999999887 4468889999999998888744 4666888877766 889999999999998765
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=5.1e-07 Score=75.58 Aligned_cols=128 Identities=11% Similarity=-0.046 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...+++..+. .+.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 456667777778888888888888888776677788888888888888888888888888765 234567788888888
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhh
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALL--GACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.+.|++++|...++++. .+.+...+..+. ..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888876 233455553333 336777888888888887764
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=2.6e-07 Score=80.39 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=82.8
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CC----CCHHHHHHHHHHHhccCChH
Q 036165 397 KCGFISEART---LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KK----LDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 397 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~ 467 (566)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. .. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333222123445555666666666666666666665553 11 12234566666666777777
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCH
Q 036165 468 LGQRLFNMMQEKYKIMP-R----TEHYACMVDLLGRAGRLAEAYEMIKTMS----TEPD----LFVWGALLGACKNHGNI 534 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~ 534 (566)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++.. ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77776666554311111 1 2345566666777777777777666654 1122 22345666667777777
Q ss_pred HHHHHHHHHHhhh
Q 036165 535 ELAEIAAKHLSEL 547 (566)
Q Consensus 535 ~~A~~~~~~~~~~ 547 (566)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777653
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=7.1e-08 Score=88.99 Aligned_cols=192 Identities=13% Similarity=0.015 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 036165 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFG 425 (566)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 425 (566)
+...+..+...+...|++++|...+..+++..+. +...+..+..+|.+.|++++|...+++..+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4567778888999999999999999999987644 678888999999999999999999998876 456788888999
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
|...|++++|...|++..+..+.+...+...+..... ...+. .+...... ..+.+......+...+ .|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKK-RWNSIEER-RIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHH-HHHHHHHT-CCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHH-HHHHHHHH-HHhhhHHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999887632222122222222211 11112 22223333 4555666555554433 6899999
Q ss_pred HHHHHhcC-CCCCHHH-HHHHHHHHHhc-CCHHHHHHHHHHHhhhC
Q 036165 506 YEMIKTMS-TEPDLFV-WGALLGACKNH-GNIELAEIAAKHLSELE 548 (566)
Q Consensus 506 ~~~~~~~~-~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 548 (566)
.+.++++. ..|+... ...+...+.+. +.+++|.++|+++.+..
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99998876 4465433 34444445444 66888999999887643
No 141
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=9.3e-06 Score=75.32 Aligned_cols=230 Identities=13% Similarity=0.043 Sum_probs=162.3
Q ss_pred hcCChh-HHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCc----------hHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 036165 327 HNFCND-EAFDTFKEMLSQGFCPTSAT-ISSILPACASAAN----------MRRGKEIHGCAIVMGVEGDLHVRSALVDM 394 (566)
Q Consensus 327 ~~g~~~-~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (566)
+.|.++ +|+..+..++.. .|+..| ++.--..+...+. ++++..+++.+....++ +..+++.-.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344443 677777777654 344333 3322222222222 56777788888876655 67777777777
Q ss_pred HHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc-----
Q 036165 395 YAKCG--FISEARTLFDKMSE---RNTVTWNSMIFGCANHGY-CDEAIELFNQMEERKKLDHLSFTAVLTACCHV----- 463 (566)
Q Consensus 395 ~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 463 (566)
+.+.| .++++..+++++.+ .|..+|+.-.-++...|. ++++++.+.++.+..+.|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 77777 48899999988875 677788877777778887 58999999999988888888888877766655
Q ss_pred ---------CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHHhcC-CCCCHHHHH
Q 036165 464 ---------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA-----------GRLAEAYEMIKTMS-TEPDLFVWG 522 (566)
Q Consensus 464 ---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~p~~~~~~ 522 (566)
+.++++++.++.+... .+-|...|+.+-..+.+. +.++++++.++++. ..||. .|.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHH
T ss_pred cccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chH
Confidence 4578899999988875 345677787766666655 46788999998887 45653 343
Q ss_pred HHHHH-----HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 523 ALLGA-----CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 523 ~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.+..+ ....|..+++...+.++.+++|.....|..+..-+
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 22222 22467889999999999999999999998886543
No 142
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=6.4e-07 Score=71.11 Aligned_cols=94 Identities=7% Similarity=-0.053 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
.+......|.+.|++++|++.|++..+..+.+...|..+..++...|++++|+..++++++. -+.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 45555666666777777777777766666666666777777777777777777777776654 1234556666677777
Q ss_pred hcCCHHHHHHHHHhcC
Q 036165 498 RAGRLAEAYEMIKTMS 513 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~ 513 (566)
..|++++|.+.|+++.
T Consensus 93 ~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQRAYEDAL 108 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777776665
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=1.9e-07 Score=86.09 Aligned_cols=189 Identities=9% Similarity=-0.023 Sum_probs=106.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 393 (566)
+...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|...++.+++..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556667777777777777777777777653 335666777777777777777777777777765433 5666677777
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHH
Q 036165 394 MYAKCGFISEARTLFDKMSE--RN-TVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a 469 (566)
+|...|++++|...|++..+ |+ ...+...+....+ ..++... ...... .+.+......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 77777777777777776653 11 1111111111111 1111111 112222 34444443333222 25677777
Q ss_pred HHHHHHhHHhcCCCCCh-hHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 036165 470 QRLFNMMQEKYKIMPRT-EHYACMVDLLGRA-GRLAEAYEMIKTMS 513 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 513 (566)
.+.++.+.+ ..|+. .....+...+.+. +.+++|.++|+++.
T Consensus 155 ~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 155 LEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777766653 24443 2333344444444 55677777777665
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1.7e-07 Score=76.97 Aligned_cols=103 Identities=11% Similarity=-0.085 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+...+..+...+.+.|++++|+..|+++.+..|.+...|..+..++...|++++|+..|+++.+. .+.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 34567777888889999999999999998888888889999999999999999999999999875 2335678888999
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCCCHH
Q 036165 495 LLGRAGRLAEAYEMIKTMS-TEPDLF 519 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~-~~p~~~ 519 (566)
+|.+.|++++|...|+++. ..|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999998877 446554
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=6.9e-07 Score=83.01 Aligned_cols=149 Identities=7% Similarity=-0.078 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDH------LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TE 487 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 487 (566)
.+...+..+...|++++|.+.+++..+..+... ..+..+...+...|++++|...++++.+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999998887643333 23445666778899999999999998854111112 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC------Cc
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS----TEPD-----LFVWGALLGACKNHGNIELAEIAAKHLSELEPE------SA 552 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 552 (566)
+++.++..|...|++++|...++++. ..|+ ..++..+...|...|++++|...++++++..++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78899999999999999999998876 1222 258889999999999999999999999976432 26
Q ss_pred hHHHHHHHHHhhcC
Q 036165 553 ANNMLLTDLYANAG 566 (566)
Q Consensus 553 ~~~~~l~~~~~~~g 566 (566)
..+..+|.+|...|
T Consensus 237 ~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 237 QLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 78899999998776
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=6.1e-07 Score=72.40 Aligned_cols=114 Identities=6% Similarity=-0.178 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHH
Q 036165 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGAL 524 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 524 (566)
+.+...+..+...+...|++++|...++++... .+.+...|..+..+|...|++++|...++++. .+.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 345667777777777778888888887777765 23346677777777888888888887777766 33456777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCC-----CchHHHHHHHHH
Q 036165 525 LGACKNHGNIELAEIAAKHLSELEPE-----SAANNMLLTDLY 562 (566)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 562 (566)
..++...|++++|...++++++..|+ +......+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887776 555555555443
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=1.6e-06 Score=68.35 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..|..+...+...|++++|.+.++++.+..+.+..++..+..++...|++++|..+++++.+. .+.+...+..+..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 445555666666666666666666666655555666666666666667777777777666654 233455666666667
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKN 530 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 530 (566)
.+.|++++|...++++. .+.+...+..+...+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 77777777777666654 22344445544444433
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=8.1e-07 Score=74.32 Aligned_cols=125 Identities=10% Similarity=0.014 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
..+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+..+.+...+..+..++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4455667777777888888887776653 3566777777888888888888888888887767777788888888888
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChhHHH--HHHHHHHhcCCHHHHHHHHHhc
Q 036165 463 VGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.|++++|...++++.+. . +.+...+. ..+..+.+.|++++|.+.+++.
T Consensus 94 ~~~~~~A~~~~~~a~~~-~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV-K-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888888888888765 1 22334443 3344467778888888877654
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=1.1e-06 Score=69.90 Aligned_cols=115 Identities=11% Similarity=-0.053 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+...|++++|...+++.....+.+...+..+..++...|++++|...++++.+. .+.+...+..+..+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 345555566666666666666666666655556666666666666677777777777666654 223455666666667
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCC
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGN 533 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 533 (566)
.+.|++++|...++++. .+.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 77777777777766655 22345556666666655554
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1.5e-06 Score=78.19 Aligned_cols=138 Identities=11% Similarity=0.012 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC--HHHHHHHHHHHh
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD--HLSFTAVLTACC 461 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~ 461 (566)
.+...+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+.......|. ...+..+..++.
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 4555677888899999999999998875 443355566668889999999999998655432221 236788888999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGAL 524 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 524 (566)
..|++++|+..|++.... ...|. .........++.+.|+.++|...|+++. ..|+...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999998753 32253 3466778888999999999999999987 45664444444
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=2e-06 Score=74.67 Aligned_cols=130 Identities=18% Similarity=0.082 Sum_probs=85.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCC--
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---------RNTVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLD-- 449 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-- 449 (566)
....+..+...|...|++++|...+++..+ ....++..+...+...|++++|...+++..+. .+.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 344555555556666666666655554432 12345666777777888888888888877665 2212
Q ss_pred --HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 450 --HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 450 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...+..+...+...|++++|...+++......-..+ ..++..+..++...|++++|.+.+++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 235777788888889999998888887643111112 2345778888899999999988887754
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=1.2e-06 Score=69.95 Aligned_cols=115 Identities=8% Similarity=-0.004 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
...|..+...+...|++++|...|++..+..+.+...+..+..++...|++++|.+.++++.+. .+.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 3455556666666666666666666666655555666666666666666666666666666654 12345566666666
Q ss_pred HHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHG 532 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g 532 (566)
|.+.|++++|.+.+++.. ..| +...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666667777666666654 222 3344555555554443
No 153
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=5.5e-07 Score=70.94 Aligned_cols=99 Identities=13% Similarity=0.019 Sum_probs=73.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKN 530 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 530 (566)
+..+...+...|++++|+..++++.+. .+.+...|..+..++.+.|++++|...++++. .+.+...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455666777888888888888888865 23366778888888888888888888888876 23467788888888889
Q ss_pred cCCHHHHHHHHHHHhhhCCCCch
Q 036165 531 HGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
.|++++|+..++++++.+|+++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999988887653
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.55 E-value=6.6e-07 Score=71.17 Aligned_cols=105 Identities=10% Similarity=-0.040 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC----C----HHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP----D----LFVWG 522 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~----~~~~~ 522 (566)
++..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|++.+++.. ..| + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3444555555555555555555555543 12234455555555555555555555555544 111 1 13456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
.+..++...|++++|++.++++++..|+ +.....|.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 6667777778888888888888777664 44444443
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=5.8e-07 Score=69.38 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC---CHHHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP---DLFVWGAL 524 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l 524 (566)
+...+..+...+...|++++|...++++.+. .+.+...+..+..++.+.|++++|...++++. ..| +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4455666777777888888888888887765 23356677778888888888888888888776 233 47778888
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhhCCCCc
Q 036165 525 LGACKNH-GNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 525 ~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 552 (566)
..++... |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 888888888888888888765
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=1.7e-06 Score=81.89 Aligned_cols=128 Identities=14% Similarity=0.039 Sum_probs=110.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RN----------------TVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
+...+..+...|.+.|++++|+..|++..+ |+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466788899999999999999999998774 43 478889999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHHhcC
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA-YEMIKTMS 513 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 513 (566)
.+.+...+..+..++...|++++|+..|+++.+. .+.+...+..+..++.+.|++++| ...+++|.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999875 234567888899999999999988 55666654
No 157
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=2.6e-06 Score=67.78 Aligned_cols=106 Identities=13% Similarity=-0.008 Sum_probs=78.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT---EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD----LFVWGALL 525 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~ 525 (566)
..+...+...|++++|...++.+.+. . +.+. ..+..+..+|.+.|++++|...++++. ..|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL-Y-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH-C-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34556677788888888888888765 1 2222 466777888888888888888888776 2333 56677888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
.++...|++++|...++++++..|+++........+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 888899999999999999999999888776655544
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.53 E-value=1e-06 Score=70.20 Aligned_cols=111 Identities=5% Similarity=-0.100 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCC----HHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-----EPD----LFVW 521 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~----~~~~ 521 (566)
..+..+...+...|++++|...++++... .+.+...+..+..+|...|++++|...++++.. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555666666677777777777766654 233455666666777777777777777766551 122 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..+..++...|++++|...++++++..| ++.....++.++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7777888888888888888888888877 56777777666543
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=8.7e-08 Score=95.08 Aligned_cols=145 Identities=5% Similarity=-0.073 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---------------HHHHHHHHHHH
Q 036165 399 GFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---------------HLSFTAVLTAC 460 (566)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~ 460 (566)
+++++|...|+...+ .....|..+...+.+.|++++|...|++..+..+.+ ...|..+..++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544443332 234467777788888888888888888888764434 46677777777
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++. ..| +...+..+..++.+.|+.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777764 23356667777777777777777777777766 233 4556666777777777776665
Q ss_pred H-HHHHHh
Q 036165 539 I-AAKHLS 545 (566)
Q Consensus 539 ~-~~~~~~ 545 (566)
+ .+++|+
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 3 345554
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.52 E-value=1.7e-06 Score=68.80 Aligned_cols=108 Identities=6% Similarity=-0.066 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC-CCCC----hhHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK-IMPR----TEHYAC 491 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~----~~~~~~ 491 (566)
..+..+...+.+.|++++|++.|++..+..|.+...|..+..++...|++++|++.++++++... ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888888888888888888887777788888888888888888888888888875411 1111 235677
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGAL 524 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 524 (566)
+..++...|++++|.+.|++.. ..|++.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 7888888889999988888876 45676655443
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=2.4e-07 Score=80.46 Aligned_cols=114 Identities=7% Similarity=-0.042 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--------------hhHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--------------TEHYACMVDLLGRAGRLAEAYEMIKTMS--T 514 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 514 (566)
..+..+...+...|++++|...|+++.+...-.|+ ...+..+..+|.+.|++++|...++++. .
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555666666666666666666543111110 1455556666666666666666666554 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
+.+...+..+..+|...|++++|...++++++.+|+++.++..++.++..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 33455566666666666666666666666666666666666666665543
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.51 E-value=6.7e-07 Score=74.74 Aligned_cols=111 Identities=14% Similarity=-0.041 Sum_probs=79.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhc------C----------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKY------K----------IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--T 514 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 514 (566)
+......+.+.|++++|+..|.+..... . .+.+...|..+..+|.+.|++++|...++++. .
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4444445555555555555555544320 0 11234578888889999999999999998877 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc-hHHHHHHHHHh
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA-ANNMLLTDLYA 563 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~ 563 (566)
+.+...|..+..+|...|++++|...++++++++|+++ .+...|..+..
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999998 66666666543
No 163
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=6.8e-07 Score=73.32 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
+..+...+.+.|++++|+..|++... .+...|..+..+|...|++++|+..|++..+..+.+...+..+..++...|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 33344444444444444444444331 233344444444444444444444444444443444444444444444444
Q ss_pred ChHHHHHHHHHhHH
Q 036165 465 LVELGQRLFNMMQE 478 (566)
Q Consensus 465 ~~~~a~~~~~~~~~ 478 (566)
++++|...|+++.+
T Consensus 104 ~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 104 ELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 164
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=1.2e-05 Score=81.57 Aligned_cols=166 Identities=7% Similarity=-0.066 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC-
Q 036165 399 GFISEARTLFDKMSE---RNTVTWNSMIFGCANHGY----------CDEAIELFNQMEERKKLDHLSFTAVLTACCHVG- 464 (566)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 464 (566)
...++|.+.++++.. .+...|+.-..++...|+ ++++++.++++.+..+.+..+|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345677888877764 345567766666666666 899999999999988889999999999999999
Q ss_pred -ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhc---------
Q 036165 465 -LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG-RLAEAYEMIKTMS-T-EPDLFVWGALLGACKNH--------- 531 (566)
Q Consensus 465 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~--------- 531 (566)
+++++.+.++++.+. .+-+...|+.-..++.+.| .++++++.++++. . .-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999986 2447788988888888999 8999999999988 2 34788898888777663
Q ss_pred -----CCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 532 -----GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 532 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+.++++.+.++++++.+|++..++..+.+++.+.|
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 56899999999999999999999999999997643
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.3e-06 Score=74.08 Aligned_cols=114 Identities=6% Similarity=-0.013 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH-HHhcCCh--HHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFG-CANHGYC--DEAIE 437 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~-~~~~~~~--~~A~~ 437 (566)
|++++|...++...+..+. +...+..+..+|...|++++|...|++..+ .+...+..+..+ +...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3344444444444433221 334444455555555555555555544432 233344444444 4445554 55555
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.++++.+..+.+...+..+..++...|++++|...++++.+
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555554444445555555555555555555555555554
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=3.1e-07 Score=71.95 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=71.7
Q ss_pred ccCChHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYK--IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 537 (566)
..|++++|+..|+++.+. + -+.+...+..+..+|.+.|++++|...++++. .+.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357788888888888753 2 12235677788888888888888888888876 334577788888888899999999
Q ss_pred HHHHHHHhhhCCCCchHHHHHHHH
Q 036165 538 EIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 538 ~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+..++++++..|+++........+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999998888887765544433
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=7.4e-06 Score=63.59 Aligned_cols=108 Identities=12% Similarity=0.015 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
...+..+...+...|++++|...|++.....+.+...+..+..++...|++++|...++++.+. .+.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 3456666777777888888888888877776667777888888888888888888888888765 23356677778888
Q ss_pred HHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHH
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEP-DLFVWGALL 525 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 525 (566)
+...|++++|.+.+++.. ..| +...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888888888888766 233 344444443
No 168
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.42 E-value=1.7e-06 Score=63.85 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
+...+..+...+.+.|++++|...+++.. .+.+...|..+..++.+.|++++|...++++++.+|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34667788888999999999999998876 3446788899999999999999999999999999999999999999999
Q ss_pred hhcC
Q 036165 563 ANAG 566 (566)
Q Consensus 563 ~~~g 566 (566)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8876
No 169
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=6.7e-06 Score=65.11 Aligned_cols=95 Identities=13% Similarity=-0.034 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..|..+...+...|++++|+..|++..+..+.+...|..+..++...|++++|+..++++.+. .+.+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 345666677777788888888888877776667777888888888888888888888887765 233466777777888
Q ss_pred HhcCCHHHHHHHHHhcC
Q 036165 497 GRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~ 513 (566)
...|++++|...++++.
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 88888888888877765
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=0.00011 Score=72.29 Aligned_cols=161 Identities=6% Similarity=-0.182 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHccCchHHHHHHHHHHHHh----CCCC-cHhH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTS----ATISSILPACASAANMRRGKEIHGCAIVM----GVEG-DLHV 387 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 387 (566)
+..+...|...|++++|.+.+.++.+.- ..++. .+.+.+...+...|+.+.+..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455666666666666666666654321 01111 11222233344556677777766665432 2221 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--------C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCC----HH
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE--------R-NTVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLD----HL 451 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~ 451 (566)
+..+...|...|++++|..++++... + ....+..++..|...|++++|..++++.... ...+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 66777888888888888877775542 1 1346777778888888888888888877654 2222 13
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666677788888888877776654
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=1.2e-06 Score=71.02 Aligned_cols=105 Identities=13% Similarity=-0.050 Sum_probs=77.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHhcC-C----
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-------------TEHYACMVDLLGRAGRLAEAYEMIKTMS-T---- 514 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---- 514 (566)
+......+.+.|++++|+..|+++.+. .|+ ...|..+..++.+.|++++|+..+++.+ .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 444555566666777777777666654 222 2277888888888888888888877766 4
Q ss_pred ---CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 515 ---EPD-LFVW----GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 515 ---~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
.|+ ...| .....++...|++++|+..|++++++.|++.....-+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 665 5567 888999999999999999999999999988776554443
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=2.2e-05 Score=73.12 Aligned_cols=169 Identities=11% Similarity=0.006 Sum_probs=124.3
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc-C-ChHHH
Q 036165 396 AKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHG-YCDEAIELFNQMEERKKLDHLSFTAVLTACCHV-G-LVELG 469 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a 469 (566)
.+.+..++|+.+++++.. .+...|+.-...+...| .++++++.++.+....+.+..+|+.-..++... + +++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 334455667777776664 34456666666666667 488888888888877777777888777777666 6 77888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH--------HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCC------
Q 036165 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA--------EAYEMIKTMS--TEPDLFVWGALLGACKNHGN------ 533 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~------ 533 (566)
+++++.+.+. .+-+...|+.-..++.+.|.++ ++++.++++. ..-|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 8888888753 3445667776666666666555 7888888776 34577888888777777775
Q ss_pred -HHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 534 -IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 534 -~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++++.+.++++++.+|+|.+++..+.+++.+.|
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 789999999999999999999999998887654
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=3.2e-06 Score=67.23 Aligned_cols=112 Identities=11% Similarity=-0.001 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC-CCC----hhHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI-MPR----TEHYAC 491 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~----~~~~~~ 491 (566)
..|..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...++++.....- .++ ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345666677777778888888887777766667777777777777888888888888777654111 111 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGAC 528 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 528 (566)
+..+|.+.|++++|.+.++++. ..|+...+..+....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7777888888888888887765 345655555554443
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=7.1e-06 Score=68.53 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
.+..+...+.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++..+..+.+...|..+..++...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444332 23334444444444555555555555554444444444445555555555
Q ss_pred CChHHHHHHHHHhHH
Q 036165 464 GLVELGQRLFNMMQE 478 (566)
Q Consensus 464 g~~~~a~~~~~~~~~ 478 (566)
|++++|...|+++.+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555554444
No 175
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=1.2e-05 Score=65.33 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+.+.|++++|...|++.....+.+...|..+..++...|++++|+..++++... .+.++..+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 344555666777777777777777777766667777777777777777777777777777765 233456667777777
Q ss_pred HhcCCHHHHHHHHHhcC
Q 036165 497 GRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~ 513 (566)
...|++++|...|+++.
T Consensus 97 ~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777777765
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=9.8e-05 Score=68.49 Aligned_cols=191 Identities=10% Similarity=0.063 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhHHHHHHHHHHhcC--
Q 036165 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF----------ISEARTLFDKMSE---RNTVTWNSMIFGCANHG-- 430 (566)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-- 430 (566)
.++|....+.++...+. +..+++.--..+...+. ++++..+++.+.. .+..+|+.-.-.+...+
T Consensus 46 s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 46 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp SHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 34678888888776544 44455543333333222 5778888887764 56778888777777777
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----------
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL-VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA---------- 499 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------- 499 (566)
.+++++..+.++.+..+-|..+|+.-..++...|. ++++++.++.+.+. . +-|...|+....++.+.
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 48999999999999988899999998888888898 59999999999986 3 45677888777666655
Q ss_pred ----CCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 500 ----GRLAEAYEMIKTMS--TEPDLFVWGALLGACKNH-----------GNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 500 ----g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+.++++++.++++. .+-|...|+-+-..+.+. +..+++++.++++++.+|++.=.+..++
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 45889999999887 445788887776666655 4689999999999999999854444443
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.32 E-value=3.4e-06 Score=80.86 Aligned_cols=129 Identities=9% Similarity=-0.076 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+.+.|++++|++.|++..+..+... ..... +...+. .+.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~-------~~~~~~--~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAED-------ADGAKL--QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCH-------HHHGGG--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccCh-------HHHHHH--HHHHHHHHHHHHHHH
Confidence 4466666667777777777777776665210000 00000 000000 012346677788888
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 497 GRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.+.|++++|.+.++++. ..| +...|..+..+|...|++++|+..++++++++|+++.++..++.++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888876 233 5777888888888888888888888888888888888888888877653
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=2.3e-06 Score=81.12 Aligned_cols=150 Identities=9% Similarity=-0.003 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
..+..+...+.+.|++++|...|++..+ |+... +...++.+++...+. ...|..+..++.+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHHHc
Confidence 3455566666666777777776665543 22111 112222222222111 13788899999999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCCHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGA-CKNHGNIELAEIA 540 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~g~~~~A~~~ 540 (566)
|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++. ..| +...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 23467889999999999999999999999987 345 44555555555 3455678889999
Q ss_pred HHHHhhhCCCCch
Q 036165 541 AKHLSELEPESAA 553 (566)
Q Consensus 541 ~~~~~~~~p~~~~ 553 (566)
|+++++..|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999998764
No 179
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=2.1e-05 Score=63.10 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=66.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+...|..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...++++.+. . +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHHH
Confidence 45566666667777777777777777776666666667777777777777777777777777654 1 234566667777
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
+|...|++++|...++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 7777777777777776655
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.28 E-value=4.8e-06 Score=69.04 Aligned_cols=131 Identities=12% Similarity=0.008 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER--KKLDH----LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TE 487 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 487 (566)
++..+...+...|++++|...+++..+. ..++. .++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555666666666666665544 11111 25666666777777777777777766543111111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMST----EPD----LFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
.+..+..++...|++++|.+.+++... ..+ ..++..+...+...|++++|...++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566677777777888888777776551 111 3456677778888888999988888888654
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=3.8e-06 Score=66.03 Aligned_cols=79 Identities=20% Similarity=0.083 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.+..+...+.+.|++++|...++++. .+.+...|..+..++...|++++|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45667888999999999999999987 3447889999999999999999999999999999999999999999999876
Q ss_pred C
Q 036165 566 G 566 (566)
Q Consensus 566 g 566 (566)
|
T Consensus 99 g 99 (121)
T 1hxi_A 99 H 99 (121)
T ss_dssp H
T ss_pred C
Confidence 4
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=9.4e-06 Score=62.32 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC--ChhHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYACMV 493 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~ 493 (566)
...|..+...+...|++++|...+++..+..+.+...+..+..++...|++++|.+.++++.+. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHH
Confidence 4456666777777788888888888777766667777777777788888888888888877764 222 466777777
Q ss_pred HHHHhc-CCHHHHHHHHHhcC
Q 036165 494 DLLGRA-GRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~-g~~~~A~~~~~~~~ 513 (566)
.++.+. |++++|.+.++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 788888 88888888887766
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.26 E-value=1.5e-06 Score=86.60 Aligned_cols=115 Identities=12% Similarity=-0.019 Sum_probs=59.1
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
+.+.|++++|.+.|++..+..+.+...+..+..++.+.|++++|++.++++.+. .+.+...+..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555666666666555554445555666666666666666666666665543 122345555556666666666666
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 036165 506 YEMIKTMS-TEP-DLFVWGALLGA--CKNHGNIELAEIAAK 542 (566)
Q Consensus 506 ~~~~~~~~-~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 542 (566)
.+.++++. ..| +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66665554 112 23333333333 555566666666665
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.9e-05 Score=76.43 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=133.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcH
Q 036165 323 SGLVHNFCNDEAFDTFKEMLSQGFCPT----------------SATISSILPACASAANMRRGKEIHGCAIVMGVE-GDL 385 (566)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 385 (566)
..+.+.|++++|++.|.++++...... ...+..+...|...|++++|.+.+..+.+.-.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777777665421111 123677889999999999999999887663211 121
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCC---
Q 036165 386 ----HVRSALVDMYAKCGFISEARTLFDKMSE--------R-NTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKL--- 448 (566)
Q Consensus 386 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--- 448 (566)
.+.+.+...+...|++++|..+++.... + -..++..+...|...|++++|..+++++... ...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2334445555667899999998876653 1 1346778899999999999999999998765 222
Q ss_pred --CHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-CCC-C-C--hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 449 --DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY-KIM-P-R--TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 449 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...++..++..|...|++++|..++++..... .+. | . ...+..++..+...|++++|...+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 13478888999999999999999998876531 111 1 1 2456777788889999999988776553
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=5e-06 Score=63.99 Aligned_cols=81 Identities=11% Similarity=-0.041 Sum_probs=55.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC------chHHH
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES------AANNM 556 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 556 (566)
+...+..+...+.+.|++++|.+.+++.. .+.+...|..+..++.+.|++++|+..++++++.+|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34456666677777777777777777665 23456667777777777777777777777777777777 66666
Q ss_pred HHHHHHhhc
Q 036165 557 LLTDLYANA 565 (566)
Q Consensus 557 ~l~~~~~~~ 565 (566)
.++.++...
T Consensus 83 ~~~~~~~~~ 91 (111)
T 2l6j_A 83 RLELAQGAV 91 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 186
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=2.8e-05 Score=63.28 Aligned_cols=97 Identities=10% Similarity=-0.051 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 491 (566)
+...+..+...+...|++++|...|++..+..+.+ ...+..+..++...|++++|+..++++.+. .+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 34445555555666666666666666655543322 445555666666666666666666666543 1223455556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+..+|...|++++|...+++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666666554
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=4.8e-06 Score=78.88 Aligned_cols=128 Identities=13% Similarity=-0.044 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+.+.|++++|...|++.....+.+ . .+...|+++++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~-~-------~~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD-F-------MFQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH-H-------HHTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-h-------hhhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 345555666666677777777777666543221 1 1222333333322111 13688899999
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.+.|++++|...++++. .+.+...|..+..+|...|++++|+..++++++++|+++.++..|+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999987 34578899999999999999999999999999999999999999988754
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.19 E-value=9.4e-06 Score=80.79 Aligned_cols=105 Identities=9% Similarity=-0.041 Sum_probs=92.5
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TE-PDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g 532 (566)
.+...+...|++++|++.++++.+. .+.+...|..+..+|.+.|++++|.+.++++. .. .+...|..+..+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3344567889999999999999976 23457889999999999999999999999987 33 46788999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 533 NIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
++++|++.++++++.+|+++..+..++.+
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999887
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=7.2e-05 Score=59.15 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=60.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVD 494 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 494 (566)
.+...+...|++++|...|+++.+..+.+. ..+..+..++...|++++|...++++.+. . +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-Y-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-C-CCCcccHHHHHHHHH
Confidence 345566667777777777777766544444 46666777777777777777777777664 1 122 455666777
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
+|.+.|++++|...++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777665
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=2.4e-05 Score=77.52 Aligned_cols=128 Identities=11% Similarity=-0.001 Sum_probs=107.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RN----------------TVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
....+..+...|.+.|++++|+..|++..+ |+ ...|..+..+|.+.|++++|+..++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456778889999999999999999998774 33 478889999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHHhcC
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY-EMIKTMS 513 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 513 (566)
.+.+...|..+..++...|++++|+..|+++.+. .+-+...+..+..++.+.|+.++|. ..+++|.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999864 2335678888999999999998875 4566665
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=2.2e-05 Score=64.94 Aligned_cols=127 Identities=9% Similarity=-0.041 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HH
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLD----HL 451 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~ 451 (566)
++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|.+.+++..+. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555555666666666666655442 11 135666667777777777777777776654 1122 33
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+..+..++...|++++|.+.+++..+...-..+ ...+..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5667777788888888888888777643111111 3456677788888888888888887654
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.05 E-value=1.3e-05 Score=64.94 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=38.9
Q ss_pred HHHHHHHHhcC-CC-CCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 503 AEAYEMIKTMS-TE-PDLFVWGALLGACKNH-----------GNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 503 ~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
++|+..|+++. .. .+..+|..+..+|... |++++|++.|+++++++|++..+...+.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45666665554 22 3455566666666554 5899999999999999999877665543
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=0.0001 Score=59.30 Aligned_cols=120 Identities=12% Similarity=-0.089 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRLAEA 505 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 505 (566)
+++++|.+.|++..+...++.. +...|...+.+++|.+.|++..+. | ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4678899999998887655554 777777888889999999999876 4 66778888888888 8899999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 506 YEMIKTMSTEPDLFVWGALLGACKN----HGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
.++|++.....++..+..|...|.. .++.++|...++++.+.+ ++.....|+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999998866788899999999988 889999999999999886 555555544
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=3.6e-05 Score=73.73 Aligned_cols=138 Identities=8% Similarity=-0.132 Sum_probs=78.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
...+..+...+.+.|++++|+..|++..+-... ...... .++.....+.+...|..+..++.+.|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--------~~~~~~-------~~~~~~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------SRAAAE-------DADGAKLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HHHHSC-------HHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--------CccccC-------hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455778899999999999999999876530000 000000 11111111223445666666666666
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TE-PDLFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
++++|+..++++.+. .+.+...+..+..+|.+.|++++|.+.++++. .. .+...+..+..++.+.++.+++.+
T Consensus 288 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 288 DWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666643 12234556666666666666666666666655 22 345555555555555555555543
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.01 E-value=5e-05 Score=63.09 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD 517 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 517 (566)
...|..+..++.+.|++++|+..++++.+. -+.+...|..+..+|...|++++|...|++.. ..|+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 356777777777778888888877777764 23346677777777778888888877777766 3343
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.97 E-value=3.6e-05 Score=59.66 Aligned_cols=76 Identities=9% Similarity=-0.050 Sum_probs=37.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 435 AIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 435 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
|+..|++..+..+.+...+..+..++...|++++|+..++++.+. .+.+...|..+..+|.+.|++++|...|+++
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555554444444555555555555555555555555555543 1223344445555555555555555555444
No 197
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.92 E-value=0.00049 Score=64.02 Aligned_cols=141 Identities=13% Similarity=-0.008 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHH--hcC---ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc---cC-----ChHHHHHHHHHhHHhc
Q 036165 414 RNTVTWNSMIFGCA--NHG---YCDEAIELFNQMEERKKLDHLSFTAVLTACCH---VG-----LVELGQRLFNMMQEKY 480 (566)
Q Consensus 414 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-----~~~~a~~~~~~~~~~~ 480 (566)
.+...|...+.+.. ..+ ...+|..+|++..+..|.....|..+..++.. .+ ........++......
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 45566666665543 233 35778889999888777666666655555431 11 1111111222221111
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
..+.++.+|..+...+...|++++|...++++. ..|+...|..+...+.-.|++++|.+.+++++.++|..+++
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 235677888888888888899999999999988 56888888888888999999999999999999999988653
No 198
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.89 E-value=4.2e-05 Score=59.49 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
+..+..+|...|++++|+..|++..+..+.+...+..+..++...|++++|+..+++..+
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444444333444444444444444444444444444443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=6.2e-05 Score=74.40 Aligned_cols=121 Identities=12% Similarity=-0.013 Sum_probs=68.8
Q ss_pred HHhcCChHHHHHHHHHhhhc----CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHh----cC-CCCC-hhHHHH
Q 036165 426 CANHGYCDEAIELFNQMEER----KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEK----YK-IMPR-TEHYAC 491 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~p~-~~~~~~ 491 (566)
+..+|++++|+.++++..+. ..++ ..+++.|..+|...|++++|+.+++++.+. +| ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455666666555555433 1121 125666666677777777776666665432 11 1122 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS---------TEPDLFV-WGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
|...|...|++++|..+++++. ..|+... ...+..++...|.+++|+.+++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766654 1233322 33444556677777777777777765
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.88 E-value=1.6e-05 Score=61.05 Aligned_cols=91 Identities=9% Similarity=0.046 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-------hhHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-------TEHY 489 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~ 489 (566)
..|..+...+...|++++|.+.|++..+..+.+...+..+..++...|++++|++.++++.+. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHHHH
Confidence 345555666666666666666666666655556666666666666666666666666666532 333 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 036165 490 ACMVDLLGRAGRLAEAYEMIK 510 (566)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~ 510 (566)
..+..++...|++++|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 444444555554444444433
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.79 E-value=0.00011 Score=59.63 Aligned_cols=60 Identities=12% Similarity=-0.032 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc-------CCCCHHHH----HHHHHHHhccCChHHHHHHHHHhH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER-------KKLDHLSF----TAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.|..+..++...|++++|+..+++..+. .+.+...| .....++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444445555554444444443 33333344 444444444444444444444443
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0013 Score=66.70 Aligned_cols=134 Identities=10% Similarity=-0.014 Sum_probs=117.7
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL----------VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
....++|++.++++....+.+...|+.-..++...|+ ++++.+.++.+.+. .+-+..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3446788999999999888888889988888888877 99999999999986 34567889998999999
Q ss_pred cC--CHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 499 AG--RLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG-NIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 499 ~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
.| +++++++.++++. ...+..+|+.-...+.+.| .++++.+.++++++.+|.|..++...+.++..
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 99 7799999999998 4568899999888889999 89999999999999999999999999998865
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=0.00012 Score=55.00 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
+...+..+..++...|++++|+..|+++.+. . +.+...|..+..+|.+.|++++|.+.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET-D-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555555555555543 1 123344555555555555555555555543
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.00018 Score=55.51 Aligned_cols=93 Identities=9% Similarity=-0.057 Sum_probs=62.5
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
.++..++++.+. .+.+...+..+..+|.+.|++++|...++++. .+.+...|..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456667766643 23356677777788888888888888887766 33456677777778888888888888888888
Q ss_pred hhCCC--CchHHHHHHHHH
Q 036165 546 ELEPE--SAANNMLLTDLY 562 (566)
Q Consensus 546 ~~~p~--~~~~~~~l~~~~ 562 (566)
+..|+ +......+...+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHH
Confidence 77663 333344444433
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.69 E-value=0.00023 Score=53.14 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 494 DLLGRAGRLAEAYEMIKTMS--TEPDLF-VWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~--~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
..+.+.|++++|...++++. .+.+.. .|..+..+|...|++++|+..++++++.+|+++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34445555555555555544 122334 455555555555555555555555555555555544
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00013 Score=72.21 Aligned_cols=120 Identities=13% Similarity=0.024 Sum_probs=85.4
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCCH----HHHH
Q 036165 394 MYAKCGFISEARTLFDKMSE-------RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER----KKLDH----LSFT 454 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~----~~~~ 454 (566)
.+...|++++|+.++++..+ ++ ..+++.|..+|...|++++|+.++++..+. ..++. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566777777776665442 22 346777888888888888888888876543 33332 3688
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKY--KIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|...|...|++++|+.+++++.+.. -+.|+ ..+.+.+..++...|++++|..++.++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988876421 12222 3455677788889999999999998875
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.64 E-value=0.00034 Score=67.96 Aligned_cols=99 Identities=11% Similarity=-0.040 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HHHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKY--KIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS---------TEPD-LFVWGALL 525 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~ 525 (566)
..|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|..+++++. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777665431 12222 3567778888888888888888777665 2344 34578888
Q ss_pred HHHHhcCCHHHHHHHHHHHhh-----hCCCCchHHHHHHH
Q 036165 526 GACKNHGNIELAEIAAKHLSE-----LEPESAANNMLLTD 560 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~ 560 (566)
..|...|++++|+.+++++++ .+|++|.+-....+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~ 429 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 999999999999999999985 67888877665544
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.56 E-value=0.00089 Score=48.70 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...++++.+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444555555555555555444444444455555555555555555555555544
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.55 E-value=0.00033 Score=52.50 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
+...+..+...|...|++++|+..|++..+..+.+...|..+..++...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567777777777888888888888877776667777788888888888888888888777654
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.50 E-value=0.00099 Score=64.79 Aligned_cols=101 Identities=12% Similarity=-0.077 Sum_probs=67.0
Q ss_pred HhccCChHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HHHHHH
Q 036165 460 CCHVGLVELGQRLFNMMQEKY--KIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS---------TEPD-LFVWGA 523 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ 523 (566)
+...|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++. ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445567777777776665431 11222 3456677777777777777777776654 1233 345778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh-----hCCCCchHHHHHHH
Q 036165 524 LLGACKNHGNIELAEIAAKHLSE-----LEPESAANNMLLTD 560 (566)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~ 560 (566)
|...|...|++++|+.+++++++ .+|++|.+...+.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 88888888999999988888885 57888776665443
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.45 E-value=0.00098 Score=50.26 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMST---------EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+..-+..++..+.+.|+++.|..+++.+.. .+...++..+..++.+.|++++|...++++++..|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 444555677777777777777777776551 13466788888999999999999999999999999998887
Q ss_pred HHHH
Q 036165 556 MLLT 559 (566)
Q Consensus 556 ~~l~ 559 (566)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7665
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.44 E-value=0.00028 Score=57.06 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=65.5
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCh----------HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLV----------ELGQRLFNMMQEKYKIMP-RTEHYACMVDLL 496 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 496 (566)
+.+.+++|.+.+++..+..+.+...|..+..++...+++ ++|+..|+++++. .| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHHH
Confidence 445677788888877777777777777777777776654 5888888888764 34 456778888888
Q ss_pred HhcC-----------CHHHHHHHHHhcC-CCCCHHHH
Q 036165 497 GRAG-----------RLAEAYEMIKTMS-TEPDLFVW 521 (566)
Q Consensus 497 ~~~g-----------~~~~A~~~~~~~~-~~p~~~~~ 521 (566)
...| ++++|.+.|+++. ..|+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 7764 7888888888877 55664433
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.42 E-value=0.0014 Score=48.01 Aligned_cols=71 Identities=7% Similarity=-0.133 Sum_probs=55.4
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 483 MPRTEHYACMVDLLGRAGR---LAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
+.++..+..+..++...++ .++|..++++.. .+.++..+..+...+.+.|++++|+..|+++++.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4567777778877765544 688888888877 4456777888888888999999999999999998888544
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.34 E-value=0.0016 Score=52.07 Aligned_cols=94 Identities=11% Similarity=-0.060 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcC-CC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 036165 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG---RLAEAYEMIKTMS-TE-P--DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
...+.+-|.+.... + .++..+...+..++.+.+ +.+++..++++.. .. | ....+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555555543 3 367777777777888777 5557777777765 22 4 3455667777889999999999
Q ss_pred HHHHHHhhhCCCCchHHHHHHHH
Q 036165 539 IAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 539 ~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+.++++++.+|+|..+.....-+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999998877665433
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0053 Score=48.99 Aligned_cols=110 Identities=9% Similarity=-0.059 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHH
Q 036165 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK----CGSVEKA 233 (566)
Q Consensus 158 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 233 (566)
+++++|++.|++..+.| .|+ .. +...+...+..+.|.+.+++..+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566677777666665 122 22 4445555555666666666666654 34455555555555 5566666
Q ss_pred HHHHHhcCC-CChhhHHHHHHHHHH----cCChhHHHHHHHHhhhCC
Q 036165 234 KKVFDEMVE-KDIVAMNAMVSGYVQ----RGLATEALNLVEEIGTPR 275 (566)
Q Consensus 234 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 275 (566)
.+.|++..+ .+...+..|...|.. .++.++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666655532 344455555555555 455555555555554443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.22 E-value=0.00049 Score=51.25 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=40.6
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCH
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNI 534 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~ 534 (566)
..+...|++++|...++++.+. .+.+.. .+..+..+|.+.|++++|.+.|+++. ..|+ ...+.. +.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 3444555555555555555543 122334 45555555555555555555555544 2222 222211 344
Q ss_pred HHHHHHHHHHhhhCCCCc
Q 036165 535 ELAEIAAKHLSELEPESA 552 (566)
Q Consensus 535 ~~A~~~~~~~~~~~p~~~ 552 (566)
.++...++++.+.+|+++
T Consensus 78 ~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 78 MDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHhccCcccc
Confidence 555555555555555443
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.024 Score=60.60 Aligned_cols=155 Identities=12% Similarity=0.045 Sum_probs=94.1
Q ss_pred HHHHhcCChHHHHH-HHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 152 GAYARRGYHQEAVT-VFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 152 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
......+++++|.+ ++..+ + +......++..+.+.|..+.|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 34455677777766 44221 1 012235666666677777777665421 11 113345667888
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036165 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 231 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....|
T Consensus 669 ~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888887766 3567888888888888888888888888754 4445555555677776665555544433
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
-++....+|.+.|++++|++++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233344455566666666665543
No 218
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.90 E-value=0.018 Score=44.21 Aligned_cols=96 Identities=10% Similarity=-0.090 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhcCCC--C--CHHHHHHHHHHHHhcCCHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE---AYEMIKTMSTE--P--DLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~ 536 (566)
.....+.+-+...... |. ++..+-..+..++.+..+..+ +..+++..... | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445555556655554 43 677777788888888887766 78888877633 3 23344566678999999999
Q ss_pred HHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 537 AEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 537 A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
|.+.++.+++.+|+|..+..+..-|
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998887765544
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.74 E-value=0.12 Score=55.21 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=76.2
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChH
Q 036165 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433 (566)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 433 (566)
..++..+.+.|..+.|.++.+. .. .-.......|++++|.++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 4555555566666665544321 11 1123445678888888887666 35567888888888888888
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 434 EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 434 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|++.|.++.. |..+...+...|+.+...++.+.+... |. ++.-..+|.+.|++++|.+++.++.
T Consensus 699 ~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 699 LAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETT-GK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHc-Cc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 88888887754 334444444455655555554444433 21 2333344555566666666655543
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.2 Score=41.05 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=89.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
+...+.|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... +..+.-.|...|+.+...++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 4456788888888887776 4677899999988899999999988888764 44455556667777777666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
-+....+ |- ++.-...+.-.|+++++.+++.+...-|.. .......|-.+.|.++.+.+
T Consensus 83 a~iA~~~-g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-ED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-cc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6665544 31 455566677889999999998877522211 11123467778888887665
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.64 E-value=0.017 Score=53.75 Aligned_cols=74 Identities=11% Similarity=-0.029 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWG 522 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~ 522 (566)
.+.+..+|..+...+...|++++|...++++... . |+...|..+...+.-.|++++|.+.++++. ..|...+|.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 4667888888887777789999999999999977 3 777777788888999999999999998876 567776654
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.63 E-value=0.0051 Score=59.68 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=63.1
Q ss_pred cCChHHHHHHHHHhhhc----CCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHh----cC-CCCC-hhHHHHHHH
Q 036165 429 HGYCDEAIELFNQMEER----KKLDH----LSFTAVLTACCHVGLVELGQRLFNMMQEK----YK-IMPR-TEHYACMVD 494 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~----~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~p~-~~~~~~l~~ 494 (566)
.|++++|+.++++..+. ..|+. .+++.|..+|...|++++|+.+++++.+. +| ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776553 22322 46888889999999999999988887643 12 1233 367889999
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
.|...|++++|..+++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999998875
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.49 E-value=0.0013 Score=62.51 Aligned_cols=145 Identities=10% Similarity=0.058 Sum_probs=97.0
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcc
Q 036165 112 LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191 (566)
Q Consensus 112 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 191 (566)
.+.+|..|..+....+++.+|++.|-+. .|+..|..+|....+.|.+++-+..+.-.++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4556677777777777777776555332 466667788888888888888888776555543333 333567777888
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------------------------CCChhh
Q 036165 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV------------------------EKDIVA 247 (566)
Q Consensus 192 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~ 247 (566)
.+++.+-++++ -.|+..-...+.+-|...|.++.|.-+|..+. ..++.|
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 87766544433 24666566667777888888888877777661 126678
Q ss_pred HHHHHHHHHHcCChhHHHHH
Q 036165 248 MNAMVSGYVQRGLATEALNL 267 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~ 267 (566)
|..+-.+|...+.+.-|.-.
T Consensus 202 WKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHH
T ss_pred HHHHHHHHhCchHHHHHHHh
Confidence 88888888888777665443
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.47 E-value=0.0089 Score=58.04 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=48.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCCH----HHH
Q 036165 393 DMYAKCGFISEARTLFDKMSE-------RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER----KKLDH----LSF 453 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~----~~~ 453 (566)
..+.+.|++++|+.++++..+ ++ ..+++.+..+|...|++++|+.+++++... ..++. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334456677777666655432 11 235666666666667777766666665432 22221 246
Q ss_pred HHHHHHHhccCChHHHHHHHHHhH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
+.|...|...|++++|+.+++++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666666666666666554
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.38 E-value=0.0036 Score=59.64 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=104.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHH
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 154 (566)
.-+|..|..++..+.+.|.+++-...+.-..+. ..++.+=+.|+-+|++.++..+..+++.. ||..-...+..-|
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHH
Confidence 355678999999999999999888877766554 35566667899999998886654433221 3333333444444
Q ss_pred HhcCChHHHHHHHHHhHHCC--------------------CCCCcchHHHHHHHH-------------------------
Q 036165 155 ARRGYHQEAVTVFHEMHIQG--------------------LKQNIFVIPSVLKAC------------------------- 189 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~------------------------- 189 (566)
...|.++.|.-+|..+.... ---+..||..+-.+|
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~e 234 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEE 234 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSG
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHH
Confidence 44444444444443321100 011333444444444
Q ss_pred -----cccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhhHHHHHH
Q 036165 190 -----GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-----------DIVAMNAMVS 253 (566)
Q Consensus 190 -----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~ 253 (566)
-..|.+++-..+++.-+.. -.....+++-|.-.|++- ++++..+.++..-.+ ....|..++-
T Consensus 235 lv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elvf 312 (624)
T 3lvg_A 235 LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 312 (624)
T ss_dssp GGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544321 123455667666666664 455555555544221 3345777777
Q ss_pred HHHHcCChhHHH
Q 036165 254 GYVQRGLATEAL 265 (566)
Q Consensus 254 ~~~~~g~~~~a~ 265 (566)
.|++-.+++.|.
T Consensus 313 LY~~ydE~DnA~ 324 (624)
T 3lvg_A 313 LYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHTCHHHHH
T ss_pred HHhcchhHHHHH
Confidence 777777777654
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.37 E-value=0.2 Score=38.47 Aligned_cols=85 Identities=14% Similarity=-0.006 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 036165 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 476 (566)
.+|++......+-.+.. +.......+..+..+|.-++-.+++..+....+|++.....+..+|.+.|+..++.+++.++
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 45666666666655543 33445666778888888888888888876667788888888888999999999999988888
Q ss_pred HHhcCCC
Q 036165 477 QEKYKIM 483 (566)
Q Consensus 477 ~~~~~~~ 483 (566)
.++ |++
T Consensus 152 C~k-G~k 157 (172)
T 1wy6_A 152 CKK-GEK 157 (172)
T ss_dssp HHT-TCH
T ss_pred HHh-hhH
Confidence 887 753
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.11 Score=42.47 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=71.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 036165 222 DMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301 (566)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 301 (566)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888887766 4567788888888888888888888887754 4455556666777777666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
+-+.....| -++....++.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 655555443 2455556667778888888877543
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.05 E-value=0.084 Score=38.37 Aligned_cols=63 Identities=6% Similarity=-0.037 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhcCC---hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 416 TVTWNSMIFGCANHGY---CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
...+..+..++...++ .++|..++++..+..+.+......+...+...|++++|+..|+++.+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444433322 46666666666665555566666666666666666666666666654
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.95 E-value=0.074 Score=42.43 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHH
Q 036165 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVG---LVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 506 (566)
...+.+-|.+..+..+++..+...+..++++++ +.++++.+++...+. . .| ..+.+-.|.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445666677666666788889999999999988 677999999999886 3 24 3566667888899999999999
Q ss_pred HHHHhcC-CCCC
Q 036165 507 EMIKTMS-TEPD 517 (566)
Q Consensus 507 ~~~~~~~-~~p~ 517 (566)
+.++.+. .+|+
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 9999987 5564
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.62 E-value=0.029 Score=50.02 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=28.7
Q ss_pred HHHHHHHHHhc-----cCChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 036165 452 SFTAVLTACCH-----VGLVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRA-GRLAEAYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 513 (566)
.|..+...|.. -|+.++|.+.|++..+. .| +..++..+.+.+++. |+.++|.+.++++.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45555555544 25555555555555543 23 234444445555442 55555555555544
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.60 E-value=0.56 Score=36.08 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
+..+..+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344455555555555555555332 2244555555555555555555555555555555543
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.54 E-value=0.48 Score=42.33 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHh-cC
Q 036165 465 LVELGQRLFNMMQEKYKIMPR---TEHYACMVDLLGRA-----GRLAEAYEMIKTMS-TEP--DLFVWGALLGACKN-HG 532 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p--~~~~~~~l~~~~~~-~g 532 (566)
....|...++++.+. .|+ ...|..|+..|.+. |+.++|.+.|++.. ..| +..++..+...+++ .|
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 346677777777754 666 46789999999994 99999999999988 556 37888888888877 49
Q ss_pred CHHHHHHHHHHHhhhCCCC
Q 036165 533 NIELAEIAAKHLSELEPES 551 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~ 551 (566)
+.++|.+.+++++...|..
T Consensus 255 d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHcCCCCC
Confidence 9999999999999988764
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.42 E-value=0.19 Score=39.50 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHHHhcCCh------HHHHHHHHHhhhcCCCCHHH-HHHHHH------HHhccCChHHHHHHHHHhHHhc
Q 036165 414 RNTVTWNSMIFGCANHGYC------DEAIELFNQMEERKKLDHLS-FTAVLT------ACCHVGLVELGQRLFNMMQEKY 480 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~a~~~~~~~~~~~ 480 (566)
.|..+|-..+....+.|++ ++..++|++.....+|+... |...+. .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 3455555555555555665 55566666666555554210 000000 112234555555555555433
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.-.- ..+|-.....-.+.|+++.|.+++.+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2121 334444444444444444444444443
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.30 E-value=0.15 Score=37.99 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=33.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYK-----IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
-+..+...+.+.|+++.|...++.+.+... -.+...++..|..+|.+.|++++|...++++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344555555555666666665555554311 01234455666666666666666666666655
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.99 E-value=0.19 Score=40.40 Aligned_cols=132 Identities=12% Similarity=0.039 Sum_probs=71.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhc--CCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEER--KKLDH-------LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYA 490 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~ 490 (566)
.-+..+...|.++.|+-+...+... ..++. .++..+..++...|++..|...|+++......-+... ...
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3355666777777777776665554 23331 2556666777777777777777777644322211111 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.+. ....... ......+...-.-+..+|.+.|++++|+..++.+-. .-..+.....|+++|.
T Consensus 105 ~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 105 STG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLYK 166 (167)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHCC
T ss_pred ccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHhc
Confidence 110 0000000 000112334444466788899999999998877542 1236778888888874
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.70 E-value=2.4 Score=38.47 Aligned_cols=83 Identities=12% Similarity=0.217 Sum_probs=53.3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc---CChHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH---GYCDEAIELFNQMEERKKLDHLSFTAVLTA 459 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 459 (566)
.++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |...++--..-+. + --
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra-------------V-L~ 197 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL-------------V-FN 197 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------------H-HH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-------------H-HH
Confidence 47888999999999999999999988633323455565555544444 4444432222221 1 12
Q ss_pred HhccCChHHHHHHHHHhHHh
Q 036165 460 CCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~ 479 (566)
|...|+...|..+++...++
T Consensus 198 yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 45678888888888877644
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.64 E-value=0.54 Score=37.02 Aligned_cols=109 Identities=9% Similarity=0.003 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHhccCCh------HHHHHHHHHhHHhcCCCCChh-HHHHHHH------HHHhcCCHHHHHHHHHhcC
Q 036165 447 KLDHLSFTAVLTACCHVGLV------ELGQRLFNMMQEKYKIMPRTE-HYACMVD------LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~ 513 (566)
+.|..+|-..+....+.|+. +...++|+++... ++|+.. .|...+. .+...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667777777777777777 7788888888774 666531 1222221 1234478888888888775
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 514 --TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 514 --~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
-+.-...|.....--.+.|+...|.+++.+++.+.|.......+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 22226667777777778888888888888888888876555443
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.53 E-value=3.7 Score=39.82 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCH-----HHHHHHHHHHhccCChHHHHHHHHHhHHhc-CCCCC----hh
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEER-KKLDH-----LSFTAVLTACCHVGLVELGQRLFNMMQEKY-KIMPR----TE 487 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~ 487 (566)
...|...|...|++.+|.+++..+... ...+. ..+...++.|...+++..|..+++++.... ...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355777888899999999999988765 32222 357777888999999999999998875321 12222 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+...+..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56677888888999999988777654
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.33 E-value=0.84 Score=35.61 Aligned_cols=79 Identities=11% Similarity=0.005 Sum_probs=56.3
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhcC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLA---EAYEMIKTMS-TEP-D-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.|+..+--.+.+++.+..+.+ ++..+++... ..| + .....-|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 567777777778888877654 4566666654 233 2 334455567788999999999999999999999988766
Q ss_pred HHHHH
Q 036165 557 LLTDL 561 (566)
Q Consensus 557 ~l~~~ 561 (566)
+..-|
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65433
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=2.4 Score=41.14 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCH----
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE-----R----NTVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDH---- 450 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~---- 450 (566)
....|...|...|++.+|..++..+.. . -+..+..-+..|...+++..|..+++++... ..+++
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345678888888899998888887652 1 1235566677888889999998888887543 23332
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH----HHHH--HhcCCH-HHHH-HHHHhcCCCCCHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM----VDLL--GRAGRL-AEAY-EMIKTMSTEPDLFVWG 522 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~--~~~g~~-~~A~-~~~~~~~~~p~~~~~~ 522 (566)
..+...+..+...++|.+|-+.|.++.+.+....+...+... +.+. ...+.. .... .++.. ..-++...+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~ 297 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHH
Confidence 246667777788888988888887776543333333222211 1111 111211 1111 11211 1125667788
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHhhhC
Q 036165 523 ALLGACKNH--GNIELAEIAAKHLSELE 548 (566)
Q Consensus 523 ~l~~~~~~~--g~~~~A~~~~~~~~~~~ 548 (566)
.++.+|... .+++...+.++..+..+
T Consensus 298 ~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 888888654 46777777776655443
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.96 E-value=0.52 Score=36.24 Aligned_cols=79 Identities=11% Similarity=0.005 Sum_probs=55.7
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLA---EAYEMIKTMS-TEP--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.|++.+--.+..++.+..+.+ ++..++++.. ..| ....+--|.-++.+.|++++|.+..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 456666667777787777653 4566666554 234 2445566667888999999999999999999999988766
Q ss_pred HHHHH
Q 036165 557 LLTDL 561 (566)
Q Consensus 557 ~l~~~ 561 (566)
+..-|
T Consensus 117 Lk~~I 121 (134)
T 3o48_A 117 LKSMV 121 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.72 E-value=0.28 Score=37.60 Aligned_cols=86 Identities=10% Similarity=0.006 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVEL---GQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAE 504 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 504 (566)
.....+.+-|.+......++..+-..+..++.++..... ++.+++.+... + .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344556666666655566888888888889998887776 77888877654 2 23 23445567788999999999
Q ss_pred HHHHHHhcC-CCCC
Q 036165 505 AYEMIKTMS-TEPD 517 (566)
Q Consensus 505 A~~~~~~~~-~~p~ 517 (566)
|++.++.+. .+|+
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 999999887 4563
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.70 E-value=4.1 Score=37.27 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=68.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCchH-HHHHHHHHH----HHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 339 KEMLSQGFCPTSATISSILPACASAANMR-RGKEIHGCA----IVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 339 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
+-..+.++++|......++..+.....-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|+..|-.-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg 162 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG 162 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 33334455555555555555544333211 112222222 2233 3457888889999999999999999988533
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 412 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.++.+..+..++.-+...+...++--.+- ..++ -|...++...|..+++...+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~~~~e~dlfia-------------RaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQDESHTAPLYCA-------------RAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTSCGGGHHHHHH-------------HHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCccHHHHHH-------------HHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 33334566665555544443222221111 1122 35556788888887766654
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.43 E-value=4.1 Score=38.45 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhc
Q 036165 422 MIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
++..|...|++.+|.+++.++.+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~ 128 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRE 128 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344444455555555544444443
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.36 E-value=0.61 Score=37.51 Aligned_cols=128 Identities=8% Similarity=-0.086 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh-------hHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCH
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE-----RNT-------VTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDH 450 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 450 (566)
..+..-+..+...|.++.|+-+.+.+.. +++ .++..+..++...+++..|...|++..+. ...+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444557778889999999988876552 442 24566788899999999999999998655 22122
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-PDLFVWGALLGA 527 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~ 527 (566)
.+...+.. ...... ......+.+.--.+..+|.+.|++++|+.+++.++.+ .++.+-..|.+.
T Consensus 101 s~~~~~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 101 KVRPSTGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred Cccccccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 12211100 000000 0022334555556889999999999999999998733 444444444443
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.02 E-value=11 Score=40.05 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=152.9
Q ss_pred HHHHHcCChhHHHHHHHHhhhCC--CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------CCChhhHHHHHH
Q 036165 253 SGYVQRGLATEALNLVEEIGTPR--VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-------EPDVVSWTSVIS 323 (566)
Q Consensus 253 ~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~ 323 (566)
-+.+..|+.++++.+++.....+ -.+....-..+.-+....|..+++.+++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 35667888899988888766421 122233333444445555655567777766554321 011222333444
Q ss_pred HHHhcCC-hhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHH--HHhc
Q 036165 324 GLVHNFC-NDEAFDTFKEMLSQGFCPTS--ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM--YAKC 398 (566)
Q Consensus 324 ~~~~~g~-~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 398 (566)
+++-.|. -+++.+.+..++...- +.. ..-..+...+...|+.+....++..+.+.. +..+...++.+ +.-.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 4444443 3467777777765421 111 112233444567788888888888776532 23333334443 3466
Q ss_pred CCHHHHHHHHHhcCC-CChh-HHH---HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 399 GFISEARTLFDKMSE-RNTV-TWN---SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 399 g~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
|+.+.+..+.+.+.. .+.. -|. ++.-+|+..|+.....++++.+.+....+......+.-++...|+.+.+.+++
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 787777777766553 3332 233 33456777888877777888888754334443444444555677777777777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCCHHHHHHHHHHH
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRL-AEAYEMIKTMSTEPDLFVWGALLGAC 528 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~ 528 (566)
+.+.+. ..|....-..+.-+..-.|.. .+|.+.+..+...+|..+-..-+.++
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 766653 244444444444445555554 67888888888667766654444443
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.01 E-value=11 Score=40.03 Aligned_cols=117 Identities=14% Similarity=-0.006 Sum_probs=50.0
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHH--HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLS--FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 504 (566)
...|+.+.+..+.+.+.....|.... -..+.-+|+..|+.....+++..+.+. ...+..-...+.-++.-.|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 34555555555555555432211111 112333455666655555566666542 11222222222223333455544
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH--HHhcCCH-HHHHHHHHHHh
Q 036165 505 AYEMIKTMSTEPDLFVWGALLGA--CKNHGNI-ELAEIAAKHLS 545 (566)
Q Consensus 505 A~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~-~~A~~~~~~~~ 545 (566)
+.++++.+....|+.+-.....+ ....|+. .+|+..+..+.
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 55555444323344333333322 2223322 45666666654
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.80 E-value=3 Score=36.59 Aligned_cols=124 Identities=16% Similarity=0.100 Sum_probs=83.8
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 503 (566)
....+.|+.++|++....-++..|.|...-..++..+|-.|+++.|.+-++...+. .|+...-..+..-+.++ +
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---H
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---H
Confidence 34567899999999999988888889999999999999999999999999988765 55543222222222221 1
Q ss_pred HH-HHHHHhcC----CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 504 EA-YEMIKTMS----TEPDLFVWGALLGA--CKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 504 ~A-~~~~~~~~----~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
.. .++|..-. ......-...++.+ ....|+.++|..+-.++++.-|..+.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11 12232111 11223333444555 44679999999999999998876654
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.10 E-value=10 Score=35.75 Aligned_cols=90 Identities=10% Similarity=-0.090 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----CC-----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCHHHHHH--
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE----RN-----TVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTA-- 455 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~-- 455 (566)
.++..|...|++.+|.+++.++.+ .| ...+-.-+..|...++..++...+.+.... ..+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466677777777777666665542 11 123444455666777777777777666544 2233332211
Q ss_pred --HHHHHh-ccCChHHHHHHHHHhHHh
Q 036165 456 --VLTACC-HVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 456 --l~~~~~-~~g~~~~a~~~~~~~~~~ 479 (566)
-+..+. ..++|..|...|-+..+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 122334 567777777766665543
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.81 E-value=15 Score=37.14 Aligned_cols=336 Identities=9% Similarity=-0.027 Sum_probs=166.5
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcC
Q 036165 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK--DIVAMNAMVSGYVQRG 259 (566)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g 259 (566)
|.....++ +.|+++.+..+...+....+.| ...|..|.... .....++...++++...- ....-+..+..+.+.+
T Consensus 10 ~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~ 86 (618)
T 1qsa_A 10 YAQIKQAW-DNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRE 86 (618)
T ss_dssp HHHHHHHH-HTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCC
Confidence 44444443 4577776666655442221111 11222222111 222456666666665432 1122344556667777
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 339 (566)
++...+..+.. .+.+...-.....+....|+...|......+-..| ...+.....++..+.+.|....
T Consensus 87 ~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~------ 154 (618)
T 1qsa_A 87 DWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDP------ 154 (618)
T ss_dssp CHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCH------
T ss_pred CHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCH------
Confidence 77766664432 12333333345566666777666666555554333 2223334444444444333322
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 036165 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418 (566)
Q Consensus 340 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 418 (566)
...+.. +......|+...|..+...+ .++. .....++..+.+ ...+....... .++...
T Consensus 155 ----------~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~ 214 (618)
T 1qsa_A 155 ----------LAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFARTT-GATDFT 214 (618)
T ss_dssp ----------HHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHH
T ss_pred ----------HHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhh
Confidence 111111 12233344444444433321 1222 222333333322 22233333222 222221
Q ss_pred ---HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHH----HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 036165 419 ---WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS----FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491 (566)
Q Consensus 419 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 491 (566)
+...+.-+.+ .+.+.|...+....+....+... ...+.......+...++...+...... ..+......
T Consensus 215 ~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~ 290 (618)
T 1qsa_A 215 RQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIER 290 (618)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHH
Confidence 1112223333 37899999998887653334332 333333444555355666677665433 344444555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMSTEP--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
.+....+.|+++.|...|+.|...+ ......=+.+++...|+.++|..+|+++.+ + .++|-.|+.
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lAa 357 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVAA 357 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHHH
Confidence 5555668899999999999998432 233334445677889999999999999875 2 356655543
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.19 E-value=11 Score=34.31 Aligned_cols=167 Identities=7% Similarity=0.050 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHH----HHHhHHCCCCCCcchHHHHHHHHc
Q 036165 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTV----FHEMHIQGLKQNIFVIPSVLKACG 190 (566)
Q Consensus 115 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 190 (566)
.+..+..-|.+.+++++|.+++. .-...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45556667788888999988765 234556677887776664 455556688888888888888775
Q ss_pred ccCChh-HHHHHHHHHH----HcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CC
Q 036165 191 HLSDIG-TGEKIHSLVL----KHSF--GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR---GL 260 (566)
Q Consensus 191 ~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 260 (566)
....-+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 2233333333 3331 236677788888888888888888877633222445555544444433 33
Q ss_pred hhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036165 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307 (566)
Q Consensus 261 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (566)
..++-- ..-..++ -|.-.++...|..+++...
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 322211 1111222 3345677777777777653
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.00 E-value=2.3 Score=40.39 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCChhHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE----KYKIMPRTEHYAC 491 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 491 (566)
...++..+...|+++++...+..+....+.+...+..++.++...|+..+|.+.|+.+.. ..|+.|++.+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 344566777888888888888888777788888899999999999999999888887644 3488888765433
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.91 E-value=2.7 Score=43.47 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.+..-|..|+....+.+++++|.+.|+..+... -++-....|-.+|.+.
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~ 659 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQP 659 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhc
Confidence 455668888888888899999999999988643 4667777777777653
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.62 E-value=12 Score=34.20 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHH----HHhHHCCCCCCcchHHHHHHHHc
Q 036165 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF----HEMHIQGLKQNIFVIPSVLKACG 190 (566)
Q Consensus 115 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 190 (566)
++.++..-|.+.+++++|.+++- .-...+.+.|+...|.++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44555666888899999988764 2345566778877666655 55556678888888888888776
Q ss_pred ccCChh-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 036165 191 HLSDIG-TGEKIHSLVL----KHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257 (566)
Q Consensus 191 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 257 (566)
....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|+..|-.-.+++...+..++.-+..
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 554321 1222333333 223 223556667777777777777777777642222222455444443333
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.39 E-value=11 Score=41.68 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=117.1
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----------------
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----R---------------- 414 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---------------- 414 (566)
.++..+...+..+.+.++... .+.++...-.+..+|..+|++++|...|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 445555666666665554332 223444445677889999999999999987652 0
Q ss_pred ------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 036165 415 ------NTVTWNSMIFGCANHGYCDEAIELFNQMEERKK-LDH----LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483 (566)
Q Consensus 415 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 483 (566)
-..-|..++..+.+.+.++.+.++-+...+... .+. ..|..+.+++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--
Confidence 012366778888899999999998888877632 232 15788899999999999999999877654 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHH------------HHHHHh-cCC--C-CCHHHHHHHHHH-HHhcCCHH-HHHHHHHHHh
Q 036165 484 PRTEHYACMVDLLGRAGRLAEA------------YEMIKT-MST--E-PDLFVWGALLGA-CKNHGNIE-LAEIAAKHLS 545 (566)
Q Consensus 484 p~~~~~~~l~~~~~~~g~~~~A------------~~~~~~-~~~--~-p~~~~~~~l~~~-~~~~g~~~-~A~~~~~~~~ 545 (566)
--......|+..++..|..++- .+++.. +.. . .+...|..++.+ +...||+. .|..+|+++.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 2345677788777776655543 333321 110 0 111234444444 45566654 4455677766
Q ss_pred hh
Q 036165 546 EL 547 (566)
Q Consensus 546 ~~ 547 (566)
++
T Consensus 1049 RL 1050 (1139)
T 4fhn_B 1049 RY 1050 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.36 E-value=2 Score=44.37 Aligned_cols=124 Identities=11% Similarity=0.075 Sum_probs=75.4
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCC-hhHHHHHHHHHHHc------CCCC-c------
Q 036165 149 ALTGAYARRGY-HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD-IGTGEKIHSLVLKH------SFGT-D------ 213 (566)
Q Consensus 149 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~------g~~~-~------ 213 (566)
.++..+...|+ ++.|+.+|+++......-+......++..+...++ --+|.+++.+.++. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 44455555556 57899999998876322222222233333333332 22344444444321 1111 1
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 214 ----AFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 214 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
......-.+.+...|+++.|+++-++... | +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11333345567778999999999988832 3 56789999999999999999999888873
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.72 E-value=18 Score=39.96 Aligned_cols=124 Identities=10% Similarity=0.019 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc-------------------
Q 036165 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP------------------- 278 (566)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------------------- 278 (566)
..++..+...+..+.+.++..-+ +.+....-.+..++...|++++|.+.|.+.-. |+..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 34556666777777777655444 34555445566778888999999988877521 1111
Q ss_pred ----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 279 ----NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD----VVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 279 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
-..-|..++..+.+.+.++.+.++-...++.....+ ...|..+.+++...|++++|...+-.+-.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 011244455555555555555555544443211111 11345555555555566555555555443
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.53 E-value=16 Score=34.61 Aligned_cols=70 Identities=6% Similarity=-0.003 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH-----hCCCCcHhHHH
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-----MGVEGDLHVRS 389 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 389 (566)
..++..+...|++++++..+..+.... +.+...+..++.++...|+..+|...|+.+.+ .|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445666777788888887777776553 55667777888888888888888877776543 57777766543
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.74 E-value=6.5 Score=28.45 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 432 CDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 432 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
.-+..+-+..+... ..|++....+.+++|-+.+++..|.++++.++.+- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 33455555555555 67777777777777777777777777777777652 233445665553
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.37 E-value=3.8 Score=31.53 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHhccCCh---HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 036165 446 KKLDHLSFTAVLTACCHVGLV---ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD 517 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 517 (566)
..|+..+--.+..++.++.+. ..++.+++.+... +..-..+.+-.|.-++.+.|++++|++..+.+. .+|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 556777777777777776654 4678888888765 411234566677888999999999999999887 4565
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.20 E-value=7.8 Score=28.03 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 322 (566)
+.-++.+-++.+....+.|++......+++|-+.+++..|.++++.++... ......|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444666777777777788888888888888888888888888888876552 22234455544
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.84 E-value=15 Score=28.63 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHhccCCh---HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 036165 447 KLDHLSFTAVLTACCHVGLV---ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD 517 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 517 (566)
.++..+-..+..++.++.+. .+++.+++.+... +..-..+..-.|.-++.+.|++++|++..+.+. .+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 56777777777777776654 4677788887765 322234455567788999999999999998887 5664
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.66 E-value=12 Score=26.83 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 193 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777776653 22232333455678899999999999999889888877643 57788888888887777
Q ss_pred hCCCCccHHHHHH
Q 036165 273 TPRVKPNVVTWNT 285 (566)
Q Consensus 273 ~~~~~p~~~~~~~ 285 (566)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 766 555555543
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.12 E-value=13 Score=26.76 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=62.5
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 193 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
...++|..|-+.+...|. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778878777776653 22233333455778899999999999999999998887754 46788888888887887
Q ss_pred hCCCCccHHHHHH
Q 036165 273 TPRVKPNVVTWNT 285 (566)
Q Consensus 273 ~~~~~p~~~~~~~ 285 (566)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 766 555555543
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.52 E-value=15 Score=32.36 Aligned_cols=52 Identities=8% Similarity=-0.045 Sum_probs=24.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchH---HHHHHHHHHhhcCChHHHHHHhccC
Q 036165 84 RIEIYIRDRALQSGKILHAQLIVSGLARLTQ---IATKLITFYTECQNIHHARMLFDEI 139 (566)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 139 (566)
.+...+..|+++..+.+ ++.|..++.. .-...+...+..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 34455556665544443 3444332211 1123344555566666666666543
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.93 E-value=17 Score=34.89 Aligned_cols=93 Identities=13% Similarity=-0.067 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCHHHHH----
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE------RNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLDHLSFT---- 454 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~---- 454 (566)
....+.+.|.+.|++++|.+.+.++.. .-...+-..+..+...+++..+...+.++... ..++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 345566666677777777766666553 12334555566666666666666666666544 222222211
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHh
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
.-+..+...+++..|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112233456666666666555544
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.79 E-value=14 Score=28.37 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 434 EAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 434 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+..+-++.+... ..|++......+++|-+.+|+..|.++|+-++.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 344445555555 6777777777778887788888888888777765 3333455666553
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.91 E-value=29 Score=28.96 Aligned_cols=142 Identities=14% Similarity=0.070 Sum_probs=65.9
Q ss_pred CchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHc
Q 036165 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190 (566)
Q Consensus 111 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 190 (566)
+++.+....+..+++.|+.+....+.+.+..++...-...+.++.+.|+.+ +...+.++.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444555555555555555444444444444455555555555566555532 3333333322 234444445555555
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC
Q 036165 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260 (566)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 260 (566)
..++.+.... +..+.+ .++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.+.
T Consensus 107 ~~~~~~~~~~-L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 107 QIGDERAVEP-LIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHCCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HhCcHHHHHH-HHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 5554332222 222221 34555555555555555554433333333344454444444555555443
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.60 E-value=8.4 Score=33.82 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=28.1
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
..+.|+++++++....-++. -+-|...-..|+..+|-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44556666666555554442 23445555556666666666666655554443
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.54 E-value=29 Score=28.70 Aligned_cols=141 Identities=14% Similarity=0.081 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcc
Q 036165 112 LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191 (566)
Q Consensus 112 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 191 (566)
++.+....+..++..|+.+....+.+.+..++...-...+.++.+.|+.+ +...+..+.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33344444444444444333334444444444444444555555555543 2333333332 2344444555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC
Q 036165 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGL 260 (566)
Q Consensus 192 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 260 (566)
.++.+....+. .+.+ .++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.|.
T Consensus 103 ~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 103 IGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred hCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 55543222222 2221 34555555555555555554433333333444455444455555555443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.15 E-value=18 Score=26.04 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 036165 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 444 (566)
..++|..|-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555443 22222233445667788888888887777788887766543 366777777777766666
Q ss_pred cCCCCHHHHHH
Q 036165 445 RKKLDHLSFTA 455 (566)
Q Consensus 445 ~~~~~~~~~~~ 455 (566)
+..|....|..
T Consensus 97 sg~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SSDPALADFAA 107 (115)
T ss_dssp CSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 55555544443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.88 E-value=16 Score=28.05 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 322 (566)
+.-+..+-++.+...++.|++......+++|-+.+|+..|.++++-++..- .+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344566777777788888999999999999999999999999998887652 33344565554
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.30 E-value=19 Score=25.94 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 036165 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE 444 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 444 (566)
..++|..|-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45556555555555443 22222233445667888888888888887788888776543 356667777777766666
Q ss_pred cCCCCHHHHHH
Q 036165 445 RKKLDHLSFTA 455 (566)
Q Consensus 445 ~~~~~~~~~~~ 455 (566)
+..|....|..
T Consensus 98 sg~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQDPRIQTFVN 108 (116)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 55555554443
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.68 E-value=33 Score=32.85 Aligned_cols=58 Identities=14% Similarity=-0.005 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhC--CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 249 NAMVSGYVQRGLATEALNLVEEIGTP--RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+.++
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444444444444444444331 11112233444445555555555555555544
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.48 E-value=20 Score=31.60 Aligned_cols=115 Identities=8% Similarity=0.025 Sum_probs=56.8
Q ss_pred HHHHHHhhcCChHHHHHHhccCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcch--HHHHHHHHccc
Q 036165 118 KLITFYTECQNIHHARMLFDEIPKTNIH---RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV--IPSVLKACGHL 192 (566)
Q Consensus 118 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~ 192 (566)
..+...++.|+.+....+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3455566778888877777765443221 1112344445566654 3444455565544321 11233333455
Q ss_pred CChhHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 193 SDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGSVEKAKKVFDEM 240 (566)
Q Consensus 193 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 240 (566)
|+.+ +.+.+++.|..++... ....+...+..|+.+-+..+++.-
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence 5554 3444445554443211 112344455667776666666654
No 276
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.91 E-value=45 Score=27.79 Aligned_cols=60 Identities=20% Similarity=0.097 Sum_probs=25.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 484 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
++..+-...+.++.+.|.. ++...+.++...++..+-...+.++.+.|. .++...+..++
T Consensus 124 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3444444444444444442 233333333334454444444555544444 23344444443
No 277
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=70.61 E-value=21 Score=29.40 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCCCHH--HH-----HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 502 LAEAYEMIKTMSTEPDLF--VW-----GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 502 ~~~A~~~~~~~~~~p~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
++.|+.+|+.+..+-|.. .. ...+..|.+.|.+++|.+++++.....|.+......|..|-.+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 567788888777433311 11 1223568899999999999999888887777777777766543
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.91 E-value=48 Score=27.33 Aligned_cols=153 Identities=16% Similarity=0.057 Sum_probs=81.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
+..+....+..+.+.|..+....+.+.+.+++...-...+.++...+..+. ...+.++. ..++...-...+.++...
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l--~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKAL--KDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHT--TCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 444444455555555554444444444445555555555555665555432 22222222 245666666666666666
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
|+.+. ...+..+.. .++..+-...+.++.+.|.. ++...+.++...++..+-...+.++.+.|+ +++...+..
T Consensus 104 ~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~ 176 (201)
T 3ltj_A 104 GDERA-VEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 176 (201)
T ss_dssp CCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred CcHHH-HHHHHHHHc----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 66433 333333322 35666666666777766654 344445555556777777777777777765 345556655
Q ss_pred Hhh
Q 036165 544 LSE 546 (566)
Q Consensus 544 ~~~ 546 (566)
+++
T Consensus 177 ~l~ 179 (201)
T 3ltj_A 177 LAE 179 (201)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.79 E-value=40 Score=28.64 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=31.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHhhcCChHHHHHHhccC
Q 036165 85 IEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHARMLFDEI 139 (566)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 139 (566)
+...+..|+.+..+.+++.+.+.|..++.. .-...+...+..|+.+-+..+++.-
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 555566788887777777776666443321 1112344445566666666666543
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.64 E-value=61 Score=26.99 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 036165 430 GYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 485 (566)
+...++.++|..|... +..-...|......+...|++.+|.++|+.-++. +-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3355677777777666 4445556677777777777777777777777666 55553
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.23 E-value=54 Score=27.77 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=39.2
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcch--HHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcC
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFV--IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCG 228 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g 228 (566)
..++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ....+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34455666666666665555554433221 112233333445543 3334444554433211 122344455666
Q ss_pred CHHHHHHHHHhc
Q 036165 229 SVEKAKKVFDEM 240 (566)
Q Consensus 229 ~~~~A~~~~~~~ 240 (566)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666666666554
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.61 E-value=50 Score=29.28 Aligned_cols=51 Identities=10% Similarity=-0.036 Sum_probs=24.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccC
Q 036165 85 IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEI 139 (566)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 139 (566)
+...+..|+.+-++.+ ++.|..++..--...+...+..|+.+-+..+++.-
T Consensus 35 L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 35 SYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4444456665544443 34443332211123344555666666666666543
No 283
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=53.33 E-value=19 Score=30.13 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=14.2
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
|.+.|.+++|.+++++.....|.+......|.
T Consensus 124 Ciek~~f~kA~eiLkr~~~~~~s~~kLr~kL~ 155 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHMSKDPTTQKLRNDLL 155 (235)
T ss_dssp HHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44445555555555544444333333333333
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.99 E-value=57 Score=28.08 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=17.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhHH
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHI 172 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~ 172 (566)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677788888888888877654
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.11 E-value=63 Score=27.22 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=6.9
Q ss_pred HHhhcCChHHHHHHhc
Q 036165 122 FYTECQNIHHARMLFD 137 (566)
Q Consensus 122 ~~~~~g~~~~A~~~~~ 137 (566)
..+..|+.+-+..+++
T Consensus 48 ~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 48 WAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3344444444444444
No 286
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=51.23 E-value=32 Score=24.74 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHH
Q 036165 99 ILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVT 165 (566)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 165 (566)
.+++.+++.|+ .+..-...+-. .....+.+.|+++++.+++++..+|..++.++...|+..-|..
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 46666666664 23222222211 1012467889999999999999999999999977777555543
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.73 E-value=1.5e+02 Score=27.30 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCC--hHHHHHHHHHhhhc
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSERNT---VTWNSMIFGCANHGY--CDEAIELFNQMEER 445 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~ 445 (566)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+...+++..+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 46678888888999999999998877642 223333344433322 34455666665554
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.72 E-value=53 Score=26.88 Aligned_cols=17 Identities=0% Similarity=0.194 Sum_probs=9.7
Q ss_pred HhhcCChHHHHHHhccC
Q 036165 123 YTECQNIHHARMLFDEI 139 (566)
Q Consensus 123 ~~~~g~~~~A~~~~~~~ 139 (566)
.+..|+.+....+++.-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34556666666666544
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.30 E-value=2.2e+02 Score=28.69 Aligned_cols=283 Identities=10% Similarity=0.018 Sum_probs=134.9
Q ss_pred HHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC
Q 036165 99 ILHAQLIVSGLAR-LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177 (566)
Q Consensus 99 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 177 (566)
++-..+.+..-.| ...+-+..+..+++.+++......+.. +..+...--....+....|+..+|....+.+...|. .
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-S 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-C
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-C
Confidence 4444444443222 334556677888888899998887776 433555555567778888998888888888776653 2
Q ss_pred CcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 036165 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257 (566)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 257 (566)
....+..++..+.+.|.+ ....++. -+......|+...|..+...+..........++..+.
T Consensus 135 ~p~~c~~l~~~~~~~g~l----------------t~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~- 196 (618)
T 1qsa_A 135 QPNACDKLFSVWRASGKQ----------------DPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN- 196 (618)
T ss_dssp CCTHHHHHHHHHHHTTCS----------------CHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHCCCC----------------CHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh-
Confidence 344445555544433332 2222333 3355566777777777777663222112222222222
Q ss_pred cCChhHHHHHHHHhhhCCCCccHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHH----HHHHHHhcCC
Q 036165 258 RGLATEALNLVEEIGTPRVKPNVV---TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS----VISGLVHNFC 330 (566)
Q Consensus 258 ~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~ 330 (566)
+...+....... .++.. .+...+.-+.+ .+.+.|...+....+.... +...... +...+...+.
T Consensus 197 --~p~~~~~~~~~~-----~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~ 267 (618)
T 1qsa_A 197 --NPNTVLTFARTT-----GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDV 267 (618)
T ss_dssp --CGGGHHHHHHHS-----CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTC
T ss_pred --ChHhHHHHHhcc-----CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCC
Confidence 222333322221 12221 11112222222 2667777777666543211 2222211 1212222332
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDK 410 (566)
Q Consensus 331 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 410 (566)
..++...+...... ..+.....-.+....+.|+++.+...+..+...... ...-.--+..++.+.|+.++|..+|..
T Consensus 268 ~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555443332 222222222333333445555555555544331111 122223344555555666666666655
Q ss_pred cCC
Q 036165 411 MSE 413 (566)
Q Consensus 411 ~~~ 413 (566)
+..
T Consensus 345 ~a~ 347 (618)
T 1qsa_A 345 LMQ 347 (618)
T ss_dssp HHT
T ss_pred Hhc
Confidence 554
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.12 E-value=54 Score=32.06 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMM 476 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~ 476 (566)
.+|.+++.|...+.+++|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3555555555555555555555544
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.99 E-value=47 Score=28.05 Aligned_cols=203 Identities=12% Similarity=0.008 Sum_probs=90.4
Q ss_pred hhcCChHHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcch---HHHHHHHHcccCChhH
Q 036165 124 TECQNIHHARMLFDEIPKT---NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV---IPSVLKACGHLSDIGT 197 (566)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~ 197 (566)
++.|+.+....+++.-... +..-+ +.+...++.|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-
T Consensus 17 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~ 91 (240)
T 3eu9_A 17 TQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM 91 (240)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHH
T ss_pred HHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcCCHHH
Confidence 3445555555555432221 11111 234445566775443 44444544333211 1233444455666554
Q ss_pred HHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 198 GEKIHSLVLKHSFGTDAF--VVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 198 a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
+ +.+++.|..++.. .....+...+..|+.+-+..+++.-... +....+.+..+. ..+......+++.+.
T Consensus 92 v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~~L~~~- 165 (240)
T 3eu9_A 92 V----VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA-YRTHSVDPTRLLLTF- 165 (240)
T ss_dssp H----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HHCCSSTTHHHHHHT-
T ss_pred H----HHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHH-HhCChHHHHHHHHhc-
Confidence 4 4445556544422 1123455566778888777777654322 222233333333 334434444444332
Q ss_pred hCCCCccHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 273 TPRVKPNVV---TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW--TSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 273 ~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
|..++.. .-.+.+...+..|+.+-+.-+ .+.|..++.... ..-+......|+.+-+..+++...+
T Consensus 166 --~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 166 --NVSVNLGDKYHKNTALHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp --TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred --CCCcchhhccCCCcHHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 2222211 111234444566776644444 444555542211 1234445667777666655554433
No 292
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=46.52 E-value=2.5e+02 Score=28.53 Aligned_cols=216 Identities=10% Similarity=-0.058 Sum_probs=98.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh---
Q 036165 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK--- 397 (566)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 397 (566)
...++.-.|+++.|++.+-.. ...+...+...+..+.-.+ ....++..- .+ .| .--+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---IDSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CCCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 445566789999999887643 2344444444444333222 111111110 00 11 1124567777764
Q ss_pred cCCHHHHHHHHHhcCCCC-h----hHHHHHHHHHHhcCChHHHH-----------HHHHHhhhcCC-CCHH-HH----HH
Q 036165 398 CGFISEARTLFDKMSERN-T----VTWNSMIFGCANHGYCDEAI-----------ELFNQMEERKK-LDHL-SF----TA 455 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~-----------~~~~~~~~~~~-~~~~-~~----~~ 455 (566)
..+..+|...|--+..++ . ..+.++-......++++.-+ -++++-..... .|.. .. ..
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~ 448 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQ 448 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHH
Confidence 578889988877664333 1 12222222222333322211 12222211111 1211 11 22
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH-HHHHHHhcC--------------C-HHHHHHHHHhcCC-----
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC-MVDLLGRAG--------------R-LAEAYEMIKTMST----- 514 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g--------------~-~~~A~~~~~~~~~----- 514 (566)
...-+...|++++|..+|..+.+- .--..+.|. |..+..... + ...|.++.+....
T Consensus 449 aA~~ae~~G~~~dAi~LY~La~~~---d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~ 525 (661)
T 2qx5_A 449 AARRADEDGRIYDSILLYQLAEEY---DIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGIS 525 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhh
Confidence 334566778888888777765321 101122222 223332211 2 2344444444321
Q ss_pred ----CCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 515 ----EPDLFVWGALLGA-----CKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 515 ----~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
..+..|+..|+.. +...|+++.|.+.++++ ++-|-+
T Consensus 526 ~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L-~llPl~ 570 (661)
T 2qx5_A 526 RQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL-DLLPFS 570 (661)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT-SCSCC-
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCC
Confidence 1234555555532 36899999999999984 455654
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.34 E-value=1e+02 Score=24.74 Aligned_cols=50 Identities=6% Similarity=0.051 Sum_probs=31.0
Q ss_pred HHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 036165 435 AIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 435 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 485 (566)
+.++|..|... +.--...|......+...|++.+|.++|+.-++. +-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 55566666665 3444555666666666667777777777666665 55554
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.11 E-value=1.1e+02 Score=29.94 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHh
Q 036165 146 RWIALTGAYARRGYHQEAVTVFHEM 170 (566)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~~~~~m 170 (566)
.+|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4555555555555555555555554
No 295
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.07 E-value=1.6e+02 Score=25.72 Aligned_cols=83 Identities=11% Similarity=-0.055 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-ChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 036165 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG-LATEALNLVEEIGTPRVKPNVVTWNTLISG 289 (566)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 289 (566)
.++..+-...+.+....|+.+....+.+.+..++...-...+.++...| ....+...+..+.. .++...-...+.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~a 215 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIG 215 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3555555555666666655433333333344455544444444444443 22344444444432 2333333344444
Q ss_pred HhcCCCH
Q 036165 290 FSKSGDQ 296 (566)
Q Consensus 290 ~~~~~~~ 296 (566)
+.+.|+.
T Consensus 216 L~~~~~~ 222 (280)
T 1oyz_A 216 LSYRKDK 222 (280)
T ss_dssp HHHTTCG
T ss_pred HHHhCCH
Confidence 4555543
No 296
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=44.88 E-value=94 Score=28.14 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHH---HHHHHHHHhhcCChHHHHHHhccCCC
Q 036165 82 SERIEIYIRDRALQSGKILHAQLIVSGLARLTQI---ATKLITFYTECQNIHHARMLFDEIPK 141 (566)
Q Consensus 82 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 141 (566)
.+.|...++.|+++-++.+ ++.|..++... -.+-+..-+..|+.+-+.-+++.-..
T Consensus 26 ~t~L~~Av~~g~~~~V~~L----L~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~ 84 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 84 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ChHHHHHHHcCCHHHHHHH----HHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc
Confidence 3445555677887655554 45564443211 11234455667888877777765443
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.82 E-value=1.1e+02 Score=24.05 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 036165 434 EAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484 (566)
Q Consensus 434 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 484 (566)
++.++|..|... +..-...|......+...|++.+|.++++.-++. +-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 366667666666 4444556666666667777777777777776665 5555
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.44 E-value=1.1e+02 Score=24.21 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--hhHHHHHHHHhhhCCCCc
Q 036165 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKD---IVAMNAMVSGYVQRGL--ATEALNLVEEIGTPRVKP 278 (566)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 278 (566)
.+.++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3456666777777777777777775442 1223333334433222 334555666665555443
No 299
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=44.30 E-value=85 Score=25.57 Aligned_cols=25 Identities=0% Similarity=-0.109 Sum_probs=11.0
Q ss_pred HHHcCChhHHHHHHHHhhhCCCCcc
Q 036165 255 YVQRGLATEALNLVEEIGTPRVKPN 279 (566)
Q Consensus 255 ~~~~g~~~~a~~~~~~m~~~~~~p~ 279 (566)
.+..|+.+.-.++.+.+.+.|..++
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344444433444444444444443
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.24 E-value=1.8e+02 Score=27.41 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=9.2
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 036165 222 DMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~ 239 (566)
...++.|+.+.+..+++.
T Consensus 118 ~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 118 HIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334455555555555544
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.03 E-value=17 Score=31.74 Aligned_cols=55 Identities=9% Similarity=-0.130 Sum_probs=30.7
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCCcch-------HHHHHHHHc--ccCChhHHHHHHHHHH
Q 036165 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFV-------IPSVLKACG--HLSDIGTGEKIHSLVL 206 (566)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 206 (566)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+.+..+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344566777777777777666665555332 122333321 5567666666665543
No 302
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=42.66 E-value=57 Score=33.34 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 502 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+.|.++++-|. ...............|++.-|.++.+.++..+|+|..+...++++|.+.|
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 355666777665 44445555566778999999999999999999999999999999998754
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.28 E-value=1e+02 Score=26.45 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=17.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 484 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
++.......+..+.+.|+.++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34444555566677777777777666433
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.77 E-value=1.1e+02 Score=23.18 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--hhHHHHHHHHhhhCCCCc
Q 036165 218 SSLIDMYSKCGSVEKAKKVFDEMVEKD---IVAMNAMVSGYVQRGL--ATEALNLVEEIGTPRVKP 278 (566)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 278 (566)
..++.-|...||.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 446666666777777777777775442 1223333333333322 244555666665555443
No 305
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=41.42 E-value=71 Score=22.55 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHH
Q 036165 97 GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEA 163 (566)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 163 (566)
...+++.+.+.|+ .+..-...+.. .....+.|+++++.+++++..+|..++.++.+.|...-|
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 4567777777765 23333332222 356788899999999988889999999998887764433
No 306
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.31 E-value=2.1e+02 Score=26.14 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 036165 219 SLIDMYSKCGSVEKAKKVFDEMV 241 (566)
Q Consensus 219 ~l~~~~~~~g~~~~A~~~~~~~~ 241 (566)
.++.-|...|+.++|...++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34444444555555555555553
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.56 E-value=1.3e+02 Score=25.48 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 036165 433 DEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484 (566)
Q Consensus 433 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 484 (566)
+++..+|..|... +.--...|......+...|++.+|.++|+.-++. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3455566666555 3344445666666666666666666666666655 4444
No 308
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=39.11 E-value=87 Score=26.37 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=25.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHhhcCChHHHHHHhccC
Q 036165 85 IEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHARMLFDEI 139 (566)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 139 (566)
+...+..|+.+ +++.+++.|..++.. .-...+...+..|+.+-+..+++.-
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 44555566654 344445555433221 1112344455667777777776653
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.46 E-value=3.4e+02 Score=29.13 Aligned_cols=131 Identities=8% Similarity=-0.014 Sum_probs=74.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 299 (566)
++..+...|..+-|.++..-+.. +...--.+..+|...|++++|...|++.- .|+..+..... ..+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------GGHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------chhhh
Confidence 66677778888887766555543 55444567778889999999999998753 23321110000 00111
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccC
Q 036165 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA----TISSILPACASAA 364 (566)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~ 364 (566)
..++..... ......-|..++..+-+.+.++-+.++-+..++.--.-|.. .+..++++.+..|
T Consensus 884 ~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111111100 01123367778888888888888888888877643222222 3556666655443
No 310
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.39 E-value=54 Score=30.23 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=38.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHhhcCChHHHHHHhccCCCCCc-chHHHHHHHHHhcCC
Q 036165 83 ERIEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHARMLFDEIPKTNI-HRWIALTGAYARRGY 159 (566)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~ 159 (566)
+.+...+..|+.+.++.++ +.|..++.. .-...+...+..|+.+-+..+++.-...+. .-++ .+...+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcCC
Confidence 3445555667765444444 444333221 011234444556666666666655443322 1122 2223344566
Q ss_pred hHHHHHHHHHh
Q 036165 160 HQEAVTVFHEM 170 (566)
Q Consensus 160 ~~~A~~~~~~m 170 (566)
.+-+..+++..
T Consensus 97 ~~~v~~Ll~~~ 107 (364)
T 3ljn_A 97 TDLVVALVEGA 107 (364)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555543
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.57 E-value=1.2e+02 Score=24.52 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=36.1
Q ss_pred HHhcCChHHHHHHHHHhHHCCCCCCcc--hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCC
Q 036165 154 YARRGYHQEAVTVFHEMHIQGLKQNIF--VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV--VSSLIDMYSKCGS 229 (566)
Q Consensus 154 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~ 229 (566)
.+..|+.+....++..-. ..++.. .-.+.+...+..|+.+ +.+.+++.|..++... ....+...+..|+
T Consensus 12 A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT---YQVDEVDTEGNTPLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT---CCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHhccHHHHHHHHHcCC---CCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 345677766666654321 122211 1112333334556644 3344445554443221 1223444556677
Q ss_pred HHHHHHHHHh
Q 036165 230 VEKAKKVFDE 239 (566)
Q Consensus 230 ~~~A~~~~~~ 239 (566)
.+-+..+++.
T Consensus 85 ~~~~~~Ll~~ 94 (201)
T 3hra_A 85 TEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666666644
No 312
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=36.36 E-value=2.4e+02 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 526 GACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
....+.+++.-|....+++++++|
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC
Confidence 334455555555555555555544
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.78 E-value=1.3e+02 Score=22.79 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSER 414 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 414 (566)
...++.-|...|+.++|.+.++++..|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 345666677777777777777776544
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.40 E-value=3.2e+02 Score=26.25 Aligned_cols=127 Identities=14% Similarity=0.104 Sum_probs=68.5
Q ss_pred HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHH
Q 036165 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT 454 (566)
Q Consensus 378 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 454 (566)
+.|++-....|..-.+.+...|++++|.++-....+ ++..+.+.+-..=...|+..--+.+|..+.+..+.+..--.
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESl 433 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESL 433 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhh
Confidence 345555555566666677777888888777665543 44555444433333445555566666666666555555444
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
-+++.-...|+.+-.++.+.+ ..+..+.+ |.+.. +..+..-|+.+|.+..
T Consensus 434 El~r~vL~q~r~~llekWl~e----~KL~~SEe----LGDlv-k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 434 ELCRPVLQQGRKQLLEKWLKE----DKLECSEE----LGDLV-KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH----TCSCCCHH----HHHHH-HHHCSHHHHHHHHHHC
T ss_pred HHhHHHHhccHHHHHHHHHhc----CCccccHH----hHhhh-hhcCHHHHHHHHHHcC
Confidence 555555555654444444332 13444433 22222 3445666666666654
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.99 E-value=3.1e+02 Score=29.43 Aligned_cols=129 Identities=11% Similarity=-0.036 Sum_probs=77.6
Q ss_pred HHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChh
Q 036165 117 TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196 (566)
Q Consensus 117 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 196 (566)
..++..+...|..+-|.++....+. |..+-..+.++|...|++++|.+.|++.- .|+..+...... ..
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~ 881 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LR 881 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GH
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hh
Confidence 3477788888999999988887776 44444567888999999999999998864 233322211000 00
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----hhHHHHHHHHHHcC
Q 036165 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDI----VAMNAMVSGYVQRG 259 (566)
Q Consensus 197 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g 259 (566)
....++... +. ......-|..++..+-+.+-++.+.++-+.. ...|. ..|+.+.++.+..|
T Consensus 882 ~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 EFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111111100 00 0112236778888888888888877666554 22233 25677777666544
No 316
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.86 E-value=1.7e+02 Score=24.42 Aligned_cols=24 Identities=4% Similarity=0.113 Sum_probs=12.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334455566655555555555543
No 317
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.04 E-value=1.3e+02 Score=26.51 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=10.6
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q 036165 286 LISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~ 305 (566)
.+...+..|+.+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 34444556666655555544
No 318
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.66 E-value=2.2e+02 Score=23.72 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcc-hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchh
Q 036165 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF-VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF 215 (566)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 215 (566)
.|-..+..+ ..++..++.++|..|...|+.-... -|......+...|++.+|.++++.-++.+-.|-..
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 455555544 2344668888888888877665443 45555666667788888888888888777666433
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.68 E-value=1.4e+02 Score=23.20 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036165 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330 (566)
Q Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 330 (566)
+..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3334444555555444333333333333444444443
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.20 E-value=2e+02 Score=24.18 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=9.6
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
.|.+.|.+++|.+++++..
T Consensus 123 VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHS
T ss_pred HHHHhcchHHHHHHHHHHh
Confidence 3445555555555555544
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.88 E-value=1.4e+02 Score=23.43 Aligned_cols=65 Identities=14% Similarity=0.340 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCC
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD--QVMVSKLFQLMRAKGVEP 313 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~ 313 (566)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 566788888899999999999988532111 12333444445544322 445666666666555443
No 322
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.35 E-value=1.6e+02 Score=23.52 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=35.6
Q ss_pred hcCChHHHHHHHHHhHHCCCCC--CcchHHHHHH-H-----HcccCChhHHHHHHHHHHH
Q 036165 156 RRGYHQEAVTVFHEMHIQGLKQ--NIFVIPSVLK-A-----CGHLSDIGTGEKIHSLVLK 207 (566)
Q Consensus 156 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 207 (566)
..|++-+|-++|+........+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888887765455 4445666666 2 2356778888887777755
No 323
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.77 E-value=1.4e+02 Score=20.19 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHhHHCCCCCCcchHHHHHHHHcccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 168 HEMHIQGLKQNIFVIPSVLKACGHLS-DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 168 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556676665543 44556665554 566778888888777655666666666666666654
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.27 E-value=1.6e+02 Score=26.97 Aligned_cols=90 Identities=10% Similarity=-0.034 Sum_probs=47.0
Q ss_pred HHHHHHhhcCChHHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCC
Q 036165 118 KLITFYTECQNIHHARMLFDEIPKT---NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD 194 (566)
Q Consensus 118 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 194 (566)
..+...+..|+.+.+..+++.-... |..-++.| ...+..|+.+-+.- +.+.|..++...-.+.+...+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTAKY----LASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHH----HHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHHHH----HHHCCCCccccCCCCHHHHHHHcCC
Confidence 3455556678888888777754332 22223333 33345566544333 3344444443222334444556677
Q ss_pred hhHHHHHHHHHHHcCCCC
Q 036165 195 IGTGEKIHSLVLKHSFGT 212 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~~~ 212 (566)
.+.+..+++.....|..+
T Consensus 97 ~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHhccccCCCH
Confidence 777777766655445433
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.12 E-value=1e+02 Score=23.97 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=18.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 192 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
.+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33444555555555554444444443334455555543
No 326
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.54 E-value=2.6e+02 Score=23.14 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=15.9
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 036165 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289 (566)
Q Consensus 258 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 289 (566)
..+.+.|+-.+-+|.+.| .|....=..++.+
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~A 57 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIG 57 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 355666666666666665 4443333333333
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.52 E-value=85 Score=24.20 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=9.6
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 036165 221 IDMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~ 239 (566)
+...+..|+.+-+.-+++.
T Consensus 105 L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 105 IHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhChHHHHHHHHhc
Confidence 3334455555555555544
No 328
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.46 E-value=2.6e+02 Score=25.03 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHhhcCChHHHHHHhccCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC
Q 036165 118 KLITFYTECQNIHHARMLFDEIPKTNIH----RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178 (566)
Q Consensus 118 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 178 (566)
..+..-++.|+.+-++.+++.=..+|.. -++.|. ..++.|+.+ +.+.+.+.|..|+
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh-~A~~~g~~~----iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQMSRED----IVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTT
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHH-HHHHcCCHH----HHHHHHHcCCchh
Confidence 3444455667777777777653333221 123333 334556644 3334445554443
No 329
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.25 E-value=3.6e+02 Score=24.21 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC--hHHHHHHHHHhHHhcCCCC
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL--VELGQRLFNMMQEKYKIMP 484 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~p 484 (566)
...++.-|...|+.++|.+.++++....--.......+..++-+.++ .+...+++..+.+. |+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCC
Confidence 45667778888888888888888753211112234444455554432 34555677777665 5443
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.21 E-value=2.3e+02 Score=23.40 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=6.4
Q ss_pred HHhcCCHHHHHHHHH
Q 036165 224 YSKCGSVEKAKKVFD 238 (566)
Q Consensus 224 ~~~~g~~~~A~~~~~ 238 (566)
.+..|+.+-+..+++
T Consensus 113 A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 113 AASKNRHEIAVMLLE 127 (231)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 334444444444443
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.01 E-value=94 Score=22.17 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHH
Q 036165 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 228 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 264 (566)
...++|.++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777665655444
No 332
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=25.79 E-value=2.3e+02 Score=21.85 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=9.8
Q ss_pred HHHhhcCChHHHHHHhcc
Q 036165 121 TFYTECQNIHHARMLFDE 138 (566)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~ 138 (566)
...++.|+.+....+++.
T Consensus 13 ~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 13 LEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHTCHHHHHHHCCT
T ss_pred HHHHHhCCHHHHHHHHHc
Confidence 334455666666666553
No 333
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.68 E-value=4e+02 Score=24.56 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC--HHHHHHHHHhcCCCChhHHHHHHHHHH
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF--ISEARTLFDKMSERNTVTWNSMIFGCA 427 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~l~~~~~ 427 (566)
...++.-|...++.++|...++.+..... ....+...+..++-+.++ .+....++..+.+.+..+-..+..++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 34555555556666666655555532111 112233333334433322 233445555444444444444444443
No 334
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.22 E-value=3.7e+02 Score=24.08 Aligned_cols=22 Identities=14% Similarity=0.415 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMV 241 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~ 241 (566)
++.-|...|+.++|...++++.
T Consensus 9 ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 9 IIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHhC
Confidence 4444444455555555555543
No 335
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.03 E-value=6.5e+02 Score=26.79 Aligned_cols=156 Identities=7% Similarity=0.054 Sum_probs=78.5
Q ss_pred HHHHHHcccCC---hhHHHHHHHHHHHcC----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHH
Q 036165 184 SVLKACGHLSD---IGTGEKIHSLVLKHS----FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-DIVAMNAMVSGY 255 (566)
Q Consensus 184 ~ll~~~~~~~~---~~~a~~~~~~~~~~g----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~ 255 (566)
.++...|..|+ .+.|.+.|+.....+ ++||. ...+...-.+.|..++-..+++..... +..--..++.++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL 768 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSAL 768 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Confidence 35555666665 455667777665532 33443 333333444566666555555555433 334455677777
Q ss_pred HHcCChhHHHHHHHHhhhCC-CCccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhcCC
Q 036165 256 VQRGLATEALNLVEEIGTPR-VKPNVVTWNTLISGFSK-SGDQVMVSKLFQLMRA---KGVEPDVVSWTSVISGLVHNFC 330 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~ 330 (566)
+...+.....++++...... +++... .. ++.+... ....+.+.+.+..=-+ .........+..++......-.
T Consensus 769 ~~~~d~~~l~~~L~~~l~~~~ir~qd~-~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 769 ACSNEVWLLNRYLGYTLNPDLIRKQDA-TS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp TTCCCHHHHHHHHHHTTCTTTSCGGGH-HH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCCCCCchhhH-HH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence 77777777777777766533 333322 21 2222222 1123334444333111 1122234456666766666555
Q ss_pred hhHHHHHHHHHHH
Q 036165 331 NDEAFDTFKEMLS 343 (566)
Q Consensus 331 ~~~A~~~~~~m~~ 343 (566)
-++-++-++...+
T Consensus 847 t~~~~~~~~~f~~ 859 (909)
T 4fke_A 847 SEFELQQLEQFKK 859 (909)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 5555555555544
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.13 E-value=2.1e+02 Score=22.32 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036165 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFC 330 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 330 (566)
..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344444455544444333333333333344444443
No 337
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.94 E-value=1.9e+02 Score=24.12 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=27.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHccCchHHHHHHHHHH
Q 036165 323 SGLVHNFCNDEAFDTFKEMLSQGFCP---------TSATISSILPACASAANMRRGKEIHGCA 376 (566)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 376 (566)
...+..|+.+-+..+++.+.+.|..+ |....+. +...+..|+.+-+..+++.-
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 34456667666666666666665432 2222222 33334556665555554443
No 338
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.79 E-value=1.3e+02 Score=23.59 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=27.3
Q ss_pred hHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 170 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
+.+.|.+++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 444454433322 22333333444455566666666555544444444445555555554
No 339
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.46 E-value=1.7e+02 Score=19.62 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH
Q 036165 332 DEAFDTFKEMLSQGFCPTSATIS 354 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~ 354 (566)
-.+.++++.+.+.+...+..|..
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVy 56 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVY 56 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHH
Confidence 33444444444433333333333
No 340
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=23.27 E-value=26 Score=17.16 Aligned_cols=11 Identities=45% Similarity=1.038 Sum_probs=8.8
Q ss_pred cccccccCCCc
Q 036165 4 RSCLFPIRDKP 14 (566)
Q Consensus 4 ~~~~~~~~~~~ 14 (566)
+||-||-++-|
T Consensus 3 hsciypgqynp 13 (26)
T 3u7d_B 3 HSCIFPGQYNP 13 (26)
T ss_pred ccccccCccCc
Confidence 68999988765
No 341
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.15 E-value=4.3e+02 Score=24.03 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 036165 82 SERIEIYIRDRALQSGKILHAQL 104 (566)
Q Consensus 82 ~~ll~~~~~~~~~~~a~~~~~~~ 104 (566)
..+++-|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44556666666666665555554
No 342
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.10 E-value=2e+02 Score=20.13 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChh
Q 036165 199 EKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262 (566)
Q Consensus 199 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 262 (566)
..+++.+.+.|+-. ..-+..+.. .....++|..+++.+..++..+|..++.++.+.+...
T Consensus 25 ~~lld~L~~~~vlt-~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 25 SYIMDHMISDGFLT-ISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHTSSC-HHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 34555666555322 222222211 3466777888888888778788888888777776543
No 343
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.95 E-value=1.5e+02 Score=24.79 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=9.3
Q ss_pred HHHhhcCChHHHHHHhcc
Q 036165 121 TFYTECQNIHHARMLFDE 138 (566)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~ 138 (566)
...+..|+.+-+..+++.
T Consensus 16 ~~A~~~g~~~~v~~Ll~~ 33 (237)
T 3b7b_A 16 HAAAEAGHVDICHMLVQA 33 (237)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHHc
Confidence 334455555555555554
No 344
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.72 E-value=81 Score=24.34 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=9.1
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 036165 221 IDMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~ 239 (566)
+...+..|+.+-+..+++.
T Consensus 72 L~~A~~~~~~~~v~~Ll~~ 90 (156)
T 1bd8_A 72 VHDAARTGFLDTLKVLVEH 90 (156)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHc
Confidence 3334445555555444443
No 345
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.57 E-value=5.1e+02 Score=24.69 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=26.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 364 (566)
+.++.+.|+..+.+|++.|..|....-..+..+.-.-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45788888888888888887766555555555544444
No 346
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.50 E-value=1.8e+02 Score=24.74 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=11.2
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCC
Q 036165 291 SKSGDQVMVSKLFQLMRAKGVEP 313 (566)
Q Consensus 291 ~~~~~~~~a~~~~~~~~~~~~~~ 313 (566)
++.|+.+....+++.+.+.|..+
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~ 35 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRL 35 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCc
Confidence 34455555555555544444433
No 347
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.45 E-value=2.3e+02 Score=22.47 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=23.7
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHH
Q 036165 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ--GFCPTSATISSILPACA 361 (566)
Q Consensus 307 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~ 361 (566)
.+.|+..+.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+.
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~ 80 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLE 80 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHH
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence 3344444332 233344444444555555555555544 43444444433333333
No 348
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.34 E-value=1.7e+02 Score=28.56 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.....|+....-.+..+.|...|.++..+.|++...|..||.+...+|
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~ 200 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.67 E-value=1.8e+02 Score=21.93 Aligned_cols=44 Identities=18% Similarity=0.019 Sum_probs=23.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036165 321 VISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364 (566)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 364 (566)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444555566666666666555555555555555444443
No 350
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.54 E-value=2.7e+02 Score=21.13 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHhHHCCCCCCcchHHHHHHHHcccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 036165 168 HEMHIQGLKQNIFVIPSVLKACGHLS-DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228 (566)
Q Consensus 168 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 228 (566)
+.|.+.|.+ -...-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 7 ~~l~~~g~r-~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLK-VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCC-CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCC-CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 351
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.99 E-value=3.6e+02 Score=22.32 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=19.3
Q ss_pred HHHHHHH---cCChhHHHHHHHHhhhCCCCccHHHHHHHH
Q 036165 251 MVSGYVQ---RGLATEALNLVEEIGTPRVKPNVVTWNTLI 287 (566)
Q Consensus 251 li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 287 (566)
+|+++.+ ..+.+.|+-.+-+|.+.|-.|....=..++
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi 49 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLA 49 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4444433 356666666666666666554444333333
No 352
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.81 E-value=3.3e+02 Score=25.47 Aligned_cols=167 Identities=11% Similarity=0.013 Sum_probs=82.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHhhcCChHHHHHHhccCCCC---CcchHHHHHHHHHhcC
Q 036165 84 RIEIYIRDRALQSGKILHAQLIVSGLARLTQ--IATKLITFYTECQNIHHARMLFDEIPKT---NIHRWIALTGAYARRG 158 (566)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 158 (566)
.+...+..|+++-++.+ ++.|..++.. .....+...+..|+.+-+..+++.-... +..-++. +...++.|
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCC
Confidence 35555667776555544 4455444321 1123455666778888888888754432 2222233 33345567
Q ss_pred ChHHHHHHHHHhHHCCCCCCcch--HHHHHHHHcccCChhHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHH
Q 036165 159 YHQEAVTVFHEMHIQGLKQNIFV--IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF--VVSSLIDMYSKCGSVEKAK 234 (566)
Q Consensus 159 ~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~ 234 (566)
+.+-+. .+.+.|..|+... -.+.+...+..|+.+.+..+++ .+..++.. .-...+...+..|+.+-+.
T Consensus 92 ~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 92 HTNMVK----LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp CHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 765433 3444455444321 1223444456677765555543 34322211 1112455566778888777
Q ss_pred HHHHhcCCCChh--hHHHHHHHHHHcCChhH
Q 036165 235 KVFDEMVEKDIV--AMNAMVSGYVQRGLATE 263 (566)
Q Consensus 235 ~~~~~~~~~~~~--~~~~li~~~~~~g~~~~ 263 (566)
.+++.-..++.. .-.+.+...+..|+.+-
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 194 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDI 194 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 777654332211 01122334455666543
No 353
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.80 E-value=1.7e+02 Score=23.31 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=18.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCC
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAK--GVEPDVVSWTSVISGLVHNFC 330 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 330 (566)
..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 40 ~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 40 KTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3333444444455555555443 333333333333344444443
No 354
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.79 E-value=3e+02 Score=21.37 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHhHHCCCCCCcchHHHHHHHHcccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 168 HEMHIQGLKQNIFVIPSVLKACGHLS-DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 168 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
+.|.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566777765543 34455555555 6677888888888877666666655566666666643
No 355
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.75 E-value=2.8e+02 Score=21.50 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 036165 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 399 (566)
..-.|.++++.+.+.++..+..+.---++.+.+.|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555544444433333344444443
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.57 E-value=1.2e+02 Score=23.03 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=19.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcc
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 191 (566)
++..+...+.+-.|.++++.+.+.+...+..|.-..+..+..
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS 57 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 344444444455555555555554444444444333444333
No 357
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.51 E-value=1.4e+02 Score=23.09 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44555555555555444444443334444554443
No 358
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.36 E-value=3.8e+02 Score=22.40 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=27.5
Q ss_pred hHHHHHHHHHH---cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc
Q 036165 247 AMNAMVSGYVQ---RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292 (566)
Q Consensus 247 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 292 (566)
..-.+|+++.| ..+.+.|+-.+-+|.+.|-.|....=..++.+.-.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34445556554 46777777777777777766655544444444433
No 359
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.06 E-value=1e+02 Score=24.66 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 219 SLIDMYSKCGSVEKAKKVFDEMVE 242 (566)
Q Consensus 219 ~l~~~~~~~g~~~~A~~~~~~~~~ 242 (566)
.++.-|...|+.++|...++++..
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC
Confidence 344445555555555555555543
Done!