BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036168
         (846 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 83/210 (39%), Gaps = 53/210 (25%)

Query: 609 GHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIG 668
             + ++ LP SI  L+ L+ + +  C EL ELP+ +           ++   S    G+ 
Sbjct: 135 ARNPLRALPASIASLNRLRELSIRACPELTELPEPL-----------ASTDASGEHQGLV 183

Query: 669 CLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLED 728
            L SLR     +   +  L   I  L  L+++ I + P L +L PA+ +L  LE L L  
Sbjct: 184 NLQSLRL----EWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRG 238

Query: 729 CESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVXXXXXXXXXXXXXXXXSTKTLKTLIIR 788
           C +L                RN        +F                     LK LI++
Sbjct: 239 CTAL----------------RNYP-----PIF----------------GGRAPLKRLILK 261

Query: 789 NCPNFMALPESLRNLEALETLAIGGCPALS 818
           +C N + LP  +  L  LE L + GC  LS
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291



 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 579 LRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICE---------LHSLQTV 629
           L  + L+ + +  L   I +L  LR L +    ++ +LP  +           L +LQ++
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 630 CL--GGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYL 687
            L   G R L   P  I  L NL+   +     S L   I  L  L  L +  C  L   
Sbjct: 189 RLEWTGIRSL---PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 688 FDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLT 733
                    L+ + + DC  L++LP  +  L+ LE L L  C +L+
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291



 Score = 35.0 bits (79), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 38/89 (42%)

Query: 562 EKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSIC 621
           E T    L + I+  Q L+ + + +S +  L   I +L  L  LDL G   ++  P    
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 622 ELHSLQTVCLGGCRELEELPKDIRYLVNL 650
               L+ + L  C  L  LP DI  L  L
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQL 279



 Score = 29.3 bits (64), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 782 LKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGED 828
           L+TL +   P   ALP S+ +L  L  L+I  CP L+E  +P    D
Sbjct: 129 LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTD 174


>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
          Length = 591

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 50/244 (20%)

Query: 273 LLVMDDVWNEDPKVWDEXXXXXXXXXXXXXXXVTTRSNKVA-SIMGT-----MRGTAGYK 326
           LL++DDVW+     W                 +TTR   V  S+MG      +  + G K
Sbjct: 239 LLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG-K 288

Query: 327 LEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL--YGSTD 384
            +GL     LSLF+         K  +L +    I+K+C G PL V  +G+LL  + +  
Sbjct: 289 EKGL---EILSLFVNM-------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRW 338

Query: 385 EHYWEYVRDNEIWKLEQKKN----DILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSV 440
           E+Y + +++ +  ++ +  +     +  A+ +S + L   +K  +   SI  KD    + 
Sbjct: 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 398

Query: 441 LLIRFWMAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDL 500
           +L   W          E EE E+I    L E +++S      NG      + F + +HDL
Sbjct: 399 VLCILW--------DMETEEVEDI----LQEFVNKSLLFCDRNG------KSFRYYLHDL 440

Query: 501 MHDL 504
             D 
Sbjct: 441 QVDF 444


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 40.4 bits (93), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 50/244 (20%)

Query: 273 LLVMDDVWNEDPKVWDEXXXXXXXXXXXXXXXVTTRSNKVA-SIMGT-----MRGTAGYK 326
           LL++DDVW+     W                 +TTR   V  S+MG      +  + G K
Sbjct: 245 LLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG-K 294

Query: 327 LEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL--YGSTD 384
            +GL     LSLF+         K  +L +    I+K+C G PL V  +G+LL  + +  
Sbjct: 295 EKGLEI---LSLFVNM-------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRW 344

Query: 385 EHYWEYVRDNEIWKLEQKKN----DILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSV 440
           E+Y + +++ +  ++ +  +     +  A+ +S + L   +K  +   SI  KD    + 
Sbjct: 345 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 404

Query: 441 LLIRFWMAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDL 500
           +L   W          E EE E+I    L E +++S      NG      + F + +HDL
Sbjct: 405 VLCILW--------DMETEEVEDI----LQEFVNKSLLFCDRNG------KSFRYYLHDL 446

Query: 501 MHDL 504
             D 
Sbjct: 447 QVDF 450


>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
          Length = 1249

 Score = 37.4 bits (85), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 97/242 (40%), Gaps = 46/242 (19%)

Query: 273 LLVMDDVWNEDPKVWDEXXXXXXXXXXXXXXXVTTRSNKVA-SIMGTMRGTAGYKLEGLP 331
           LL++DDVW  DP V                  +TTR   V  S+MG           GL 
Sbjct: 239 LLILDDVW--DPWV-------LKAFDNQCQILLTTRDKSVTDSVMGPKHVVP--VESGLG 287

Query: 332 YES---CLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL--YGSTDEH 386
            E     LSLF+         K  +L      I+K+C G PL V  +G+LL  + +   +
Sbjct: 288 REKGLEILSLFVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAY 340

Query: 387 YWEYVRDNEIWKLEQKKN----DILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLL 442
           Y   +++ +  ++ +  +     +  A+ +S + L   +K  +   SI  KD    + +L
Sbjct: 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400

Query: 443 IRFWMAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMH 502
              W          E EE E+I    L E +++S      NG      + F + +HDL  
Sbjct: 401 CVLW--------DLETEEVEDI----LQEFVNKSLLFCNRNG------KSFCYYLHDLQV 442

Query: 503 DL 504
           D 
Sbjct: 443 DF 444


>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
           Murine Apaf-1
          Length = 1256

 Score = 35.8 bits (81), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 38/238 (15%)

Query: 273 LLVMDDVWNEDPKVWDEXXXXXXXXXXXXXXXVTTRSNKVASIMGTMRGTAGYKLEGLPY 332
           LL++DDVW  DP V                  VT        ++    G    K  GL  
Sbjct: 246 LLILDDVW--DPWVLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREK--GLEI 301

Query: 333 ESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL--YGSTDEHYWEY 390
              LSLF+         K  +L      I+K+C G PL V  +G+LL  + +   +Y   
Sbjct: 302 ---LSLFVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQ 351

Query: 391 VRDNEIWKLEQKKN----DILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFW 446
           +++ +  ++ +  +     +  A+ +S + L   +K  +   SI  KD    + +L   W
Sbjct: 352 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 411

Query: 447 MAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDL 504
                     E EE E+I    L E +++S      NG      + F + +HDL  D 
Sbjct: 412 --------DLETEEVEDI----LQEFVNKSLLFCNRNG------KSFCYYLHDLQVDF 451


>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
          Intracellular Mla Immune Receptors Defines A Minimal
          Functional Module For Triggering Cell Death
          Length = 115

 Score = 32.3 bits (72), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 8  LEKLMEKLGSRAFEELSLFYCVKNDAEKLKETLTTVKCVVLDAEE--KQVHNHQLRDWLE 65
          +  L+ KLG    EE  L   VK + E L + L +    ++   E  ++  + Q + W +
Sbjct: 3  ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWAD 62

Query: 66 KLKDACYDAEDLLDDFEVE 84
          ++++  Y  ED++D F V+
Sbjct: 63 EVRELSYVIEDVVDKFLVQ 81


>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
          Length = 612

 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 570 TSCISKSQFLRVIDLSDSAIEV---LSREIGNLKHLRYLDLS 608
           T C+ K + L+ +DLS S IE     + ++ NL+HL+YL+LS
Sbjct: 342 TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLS 383


>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
           (Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
           2.80 A Resolution
          Length = 876

 Score = 30.8 bits (68), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 780 KTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIA 833
           K L  + + NCPN   LP+ L +L  L++L I     +S     Q   DW ++A
Sbjct: 491 KDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLA 541


>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
 pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
          Length = 606

 Score = 30.8 bits (68), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 29/158 (18%)

Query: 502 HDLAQLVAKGEFLILGSDCQ-SIPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPIN 560
           H L  LV     LI  ++   S PK ++HL F+    S  DF               P++
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF--------------IPLH 126

Query: 561 DEKTNQSIL--TSCISK--------SQFLRVIDLSDSAIEVLSRE-IGNLKHLR--YLDL 607
           ++KT +S+   ++ IS         ++ L+V+D  ++AI  LS+E + +L+      L+L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 608 SGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIR 645
           +G+D     P +  +    Q++  GG + L  + K ++
Sbjct: 187 NGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLK 223


>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
 pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
          Length = 591

 Score = 30.4 bits (67), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 13  EKLGSRAFEELSLFYCVKNDA--EKLKETLTTVKCVVLDAEEKQVHNHQLRDWLEKLKDA 70
           ++   + FE+  +    K DA  E+L +    +K    DA  K + + + +  +E  K A
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADA--KVMKDAKTKKVVESKKKA 516

Query: 71  CYDAEDLLDDFEVEALRRQVMKQRSIGRNLRNFFGSSNPIAFRCRMGHQIKKI-----RE 125
               E+ L   EV+A  R+  KQ ++G +  NF      +A+  + G  I+KI     RE
Sbjct: 517 VQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQRE 576

Query: 126 RF 127
           +F
Sbjct: 577 KF 578


>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
          Length = 592

 Score = 30.4 bits (67), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 13  EKLGSRAFEELSLFYCVKNDA--EKLKETLTTVKCVVLDAEEKQVHNHQLRDWLEKLKDA 70
           ++   + FE+  +    K DA  E+L +    +K    DA  K + + + +  +E  K A
Sbjct: 460 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADA--KVMKDAKTKKVVESKKKA 517

Query: 71  CYDAEDLLDDFEVEALRRQVMKQRSIGRNLRNFFGSSNPIAFRCRMGHQIKKI-----RE 125
               E+ L   EV+A  R+  KQ ++G +  NF      +A+  + G  I+KI     RE
Sbjct: 518 VQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQRE 577

Query: 126 RF 127
           +F
Sbjct: 578 KF 579


>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
          Length = 563

 Score = 30.4 bits (67), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query: 18  RAFEELSLFYCVKNDA--EKLKETLTTVKCVVLDAEEKQVHNHQLRDWLEKLKDACYDAE 75
           + FE+  +    K DA  E+L +    +K    DA  K + + + +  +E  K A    E
Sbjct: 436 KTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADA--KVMKDAKTKKVVESKKKAVQRLE 493

Query: 76  DLLDDFEVEALRRQVMKQRSIGRNLRNFFGSSNPIAFRCRMGHQIKKI-----RERFDEI 130
           + L   EV+A  R+  KQ ++G +  NF      +A+  + G  I+KI     RE+F   
Sbjct: 494 EQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQREKFAWA 553

Query: 131 ANM 133
            +M
Sbjct: 554 IDM 556


>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
           With A 22 Base Pair Dna Duplex Containing An 8-Oxog
           Lesion
          Length = 564

 Score = 30.0 bits (66), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 9/128 (7%)

Query: 13  EKLGSRAFEELSLFYCVKNDA--EKLKETLTTVKCVVLDAEEKQVHNHQLRDWLEKLKDA 70
           ++   + FE+  +    K DA  E+L +    +K    DA  K + + + +  +E  K A
Sbjct: 432 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADA--KVMKDAKTKKVVESKKKA 489

Query: 71  CYDAEDLLDDFEVEALRRQVMKQRSIGRNLRNFFGSSNPIAFRCRMGHQIKKI-----RE 125
               E+ L   EV+A  R+  KQ ++G +  NF      +A+  + G  I+KI     RE
Sbjct: 490 VQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCKKWGVPIEKIYNKTQRE 549

Query: 126 RFDEIANM 133
           +F    +M
Sbjct: 550 KFAWAIDM 557


>pdb|3F3X|A Chain A, Crystal Structure Of The Transcriptional Regulator Bldr
           From Sulfolobus Solfataricus
          Length = 144

 Score = 29.6 bits (65), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 588 AIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHS----LQTVCLGGCRELEE--LP 641
           +I+  +  +G L +L YLD S      + P S+  L +     Q+       +LE   L 
Sbjct: 21  SIKEFNNRLGKLMNLSYLDFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLV 80

Query: 642 KDIRYLVNLRMFVV--STKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLC 695
           + IR   + R+ +V  + K + +L      L +L   M+SD EN+E L + ++++ 
Sbjct: 81  RRIRDSKDRRIVIVEITPKGRQVLLEANEVLRNLVNEMLSDVENVEELLEGLNKIL 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,204,963
Number of Sequences: 62578
Number of extensions: 918659
Number of successful extensions: 2254
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2223
Number of HSP's gapped (non-prelim): 39
length of query: 846
length of database: 14,973,337
effective HSP length: 107
effective length of query: 739
effective length of database: 8,277,491
effective search space: 6117065849
effective search space used: 6117065849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)